LC-MS/MS Detection of Karlotoxins Reveals New Variants in Strains of the Marine Dinoflagellate Karlodinium veneficum from the Ebro Delta (NW Mediterranean).

PubMed

Krock, Bernd; Busch, Julia A; Tillmann, Urban; García-Camacho, Francisco; Sánchez-Mirón, Asterio; Gallardo-Rodríguez, Juan J; López-Rosales, Lorenzo; Andree, Karl B; Fernández-Tejedor, Margarita; Witt, Matthias; Cembella, Allan D; Place, Allen R

2017-12-18

A liquid chromatography-tandem mass spectrometry (LC-MS/MS) method was developed for the detection and quantitation of karlotoxins in the selected reaction monitoring (SRM) mode. This novel method was based upon the analysis of purified karlotoxins (KcTx-1, KmTx-2, 44-oxo-KmTx-2, KmTx-5), one amphidinol (AM-18), and unpurified extracts of bulk cultures of the marine dinoflagellate Karlodinium veneficum strain CCMP2936 from Delaware (Eastern USA), which produces KmTx-1 and KmTx-3. The limit of detection of the SRM method for KmTx-2 was determined as 2.5 ng on-column. Collision induced dissociation (CID) spectra of all putative karlotoxins were recorded to present fragmentation patterns of each compound for their unambiguous identification. Bulk cultures of K. veneficum strain K10 isolated from an embayment of the Ebro Delta, NW Mediterranean, yielded five previously unreported putative karlotoxins with molecular masses 1280, 1298, 1332, 1356, and 1400 Da, and similar fragments to KmTx-5. Analysis of several isolates of K. veneficum from the Ebro Delta revealed small-scale diversity in the karlotoxin spectrum in that one isolate from Fangar Bay produced KmTx-5, whereas the five putative novel karlotoxins were found among several isolates from nearby, but hydrographically distinct Alfacs Bay. Application of this LC-MS/MS method represents an incremental advance in the determination of putative karlotoxins, particularly in the absence of a complete spectrum of purified analytical standards of known specific potency.

LC-MS/MS Detection of Karlotoxins Reveals New Variants in Strains of the Marine Dinoflagellate Karlodinium veneficum from the Ebro Delta (NW Mediterranean)

PubMed Central

Krock, Bernd; Busch, Julia A.; García-Camacho, Francisco; Sánchez-Mirón, Asterio; Gallardo-Rodríguez, Juan J.; López-Rosales, Lorenzo; Andree, Karl B.; Fernández-Tejedor, Margarita; Witt, Matthias; Place, Allen R.

2017-01-01

A liquid chromatography-tandem mass spectrometry (LC-MS/MS) method was developed for the detection and quantitation of karlotoxins in the selected reaction monitoring (SRM) mode. This novel method was based upon the analysis of purified karlotoxins (KcTx-1, KmTx-2, 44-oxo-KmTx-2, KmTx-5), one amphidinol (AM-18), and unpurified extracts of bulk cultures of the marine dinoflagellate Karlodinium veneficum strain CCMP2936 from Delaware (Eastern USA), which produces KmTx-1 and KmTx-3. The limit of detection of the SRM method for KmTx-2 was determined as 2.5 ng on-column. Collision induced dissociation (CID) spectra of all putative karlotoxins were recorded to present fragmentation patterns of each compound for their unambiguous identification. Bulk cultures of K. veneficum strain K10 isolated from an embayment of the Ebro Delta, NW Mediterranean, yielded five previously unreported putative karlotoxins with molecular masses 1280, 1298, 1332, 1356, and 1400 Da, and similar fragments to KmTx-5. Analysis of several isolates of K. veneficum from the Ebro Delta revealed small-scale diversity in the karlotoxin spectrum in that one isolate from Fangar Bay produced KmTx-5, whereas the five putative novel karlotoxins were found among several isolates from nearby, but hydrographically distinct Alfacs Bay. Application of this LC-MS/MS method represents an incremental advance in the determination of putative karlotoxins, particularly in the absence of a complete spectrum of purified analytical standards of known specific potency. PMID:29258236

Occurrence and transport of pesticides and alkylphenols in water samples along the Ebro River Basin

NASA Astrophysics Data System (ADS)

Navarro, Alícia; Tauler, Romà; Lacorte, Sílvia; Barceló, Damià

2010-03-01

SummaryWe report the temporal and geographical variations of a set of 30 pesticides (including triazines, organophosphorus and acetanilides) and industrial compounds in surface waters along the Ebro River during the period 2004-2006. Using descriptive statistics we found that the compounds with industrial origin (tributylphosphate, octylphenol and nonylphenol) appeared in over 60% of the samples analyzed and at very high concentrations, while pesticides had a point source origin in the Ebro delta area and overall low-levels, between 0.005 and 2.575 μg L -1. Correlations among pollutants and their distributions were studied using Principal Component Analysis (PCA), a multivariate exploratory data analysis technique which permitted us to discern between agricultural and industrial source contamination. Over a 3 years period a seasonal trend revealed highest concentrations of pesticides over the spring-summer period following pesticide application.

Sea, freshwater or saltpans? Foraging ecology of terns to assess mercury inputs in a wetland landscape: The Ebro Delta

NASA Astrophysics Data System (ADS)

Cotin, Javier; García-Tarrasón, Manuel; Sanpera, Carolina; Jover, Lluis; Ruiz, Xavier

2011-03-01

The Ebro catchment, the largest river basin in Spain, includes various heavily industrialized areas. Among these is the Flix site, where a chemical plant has been operating since the beginning of the 20th century. This extended operational period, together with the construction of a dam next to the factory around 1960, resulted in the accumulation of large amounts of heavily polluted sediments in the adjacent riverbed, many of which are contaminated by mercury. Pollutants from Flix are carried downstream by the Ebro River to its delta. In order to assess the transfer of mercury to the complex river estuary ecosystem, we studied the ecology of the tern community living there as these birds segregate into a range of habitats. For this purpose, first we used stable isotope analysis (SIA) (δ 34S, δ 13C, δ 15N) of eggs to determine the trophic ecology and habitat partitioning of several tern species (Common, Sandwich, Little, Gull-Billed and Whiskered Tern) breeding sympatrically, in order to link their foraging ecology with habitat types. Next we measured mercury concentrations in eggs to monitor the input of this metal into the diverse habitats. With the exception of the Little Tern, the other terns used a restricted habitat range in the Ebro Delta, as shown by C and S isotopes; the Gull-Billed and Whiskered Tern foraged in freshwater habitats, while the Common and Sandwich Tern used marine habitats. This restricted feeding behavior of the Gull-Billed and Common Tern contrasts with previous reports in other breeding sites. The Little Tern, which showed a wide range of isotopic values, was found to be an opportunistic forager but fed mainly in saltpans, a feeding habitat not reported previously for this species in this area. We found that mercury concentrations are related to foraging habitat and diet, and are unexpectedly higher in species feeding on demersal prey in marine habitats and also higher in birds feeding in saltpans than in those feeding in freshwater habitats. The mercury concentrations found in the Little and Common Tern eggs sampled in "Punta de la Banya" may be sufficiently high to endanger breeding success.

Morpho-structure and sedimentology of the Holocene Ebro prodelta mud belt (northwestern Mediterranean Sea)

USGS Publications Warehouse

Diaz, J.I.; Palanques, A.; Nelson, C.H.; Guillen, J.

1996-01-01

The Ebro "mud belt" is a Holocene prodeltaic deposit which has developed around, and southwestward from, the present Ebro Delta plain, covering most of the inner and middle Ebro continental shelf. Seismic-reflection profiles of this mud belt exhibit a complex sigmoid-oblique configuration. Top-set strata dip gently seaward to the 20 m isobath, and overly the fore-set beds which are exposed in up to 40-60 m water depth. Top-set and fore-set beds have mostly parallel and high continuity reflectors. Thin, acoustically transparent bottom-set beds are present at the base of the fore-set beds and extend to the distal edge of the prodelta (60-80 m water depth), where they overly relict transgressive sand deposits. There is no evidence of mass movement. The suspended load discharged by the river is mainly transported alongshelf by advective processes. This dynamics produces thin clinoform deposits that extend alongshelf for tens of kilometres. Mud belt deposition began about 10,000-11,000 years BP. Accumulation rate ranges from less than 0.5 mm y-1 on the seaward and southern edges of the deposit to about 2.5 mm y-1 near the present river mouth. Copyright ?? 1995 Elsevier Science Ltd. All rights reserved.

Seabird aggregative patterns: a new tool for offshore wind energy risk assessment.

PubMed

Christel, Isadora; Certain, Grégoire; Cama, Albert; Vieites, David R; Ferrer, Xavier

2013-01-15

The emerging development of offshore wind energy has raised public concern over its impact on seabird communities. There is a need for an adequate methodology to determine its potential impacts on seabirds. Environmental Impact Assessments (EIAs) are mostly relying on a succession of plain density maps without integrated interpretation of seabird spatio-temporal variability. Using Taylor's power law coupled with mixed effect models, the spatio-temporal variability of species' distributions can be synthesized in a measure of the aggregation levels of individuals over time and space. Applying the method to a seabird aerial survey in the Ebro Delta, NW Mediterranean Sea, we were able to make an explicit distinction between transitional and feeding areas to define and map the potential impacts of an offshore wind farm project. We use the Ebro Delta study case to discuss the advantages of potential impacts maps over density maps, as well as to illustrate how these potential impact maps can be applied to inform on concern levels, optimal EIA design and monitoring in the assessment of local offshore wind energy projects. Copyright © 2012 Elsevier Ltd. All rights reserved.

Rapid spectrofluorometric screening of poly-hydroxyalkanoate-producing bacteria from microbial mats.

PubMed

Berlanga, Mercedes; Montero, M T; Fernández-Borrell, Jordi; Guerrero, Ricardo

2006-06-01

Microbial mat ecosystems are characterized by both seasonal and diel fluctuations in several physicochemical variables, so that resident microorganisms must frequently adapt to the changing conditions of their environment. It has been pointed out that, under stress conditions, bacterial cells with higher contents of poly-hydroxyalkanoates (PHA) survive longer than those with lower PHA content. In the present study, PHA-producing strains from Ebro Delta microbial mats were selected using the Nile red dying technique and the relative accumulation of PHA was monitored during further laboratory cultivation. The number of heterotrophic isolates in trypticase soy agar (TSA) was ca. 107 colony-forming units/g microbial mat. Of these, 100 randomly chosen colonies were replicated on mineral salt agar limited in nitrogen, and Nile red was added to the medium to detect PHA. Orange fluorescence, produced upon binding of the dye to polymer granules in the cell, was detected in approximately 10% of the replicated heterotrophic isolates. The kinetics of PHA accumulation in Pseudomonas putida, and P. oleovorans were compared with those of several of the environmental isolates spectrofluorometry. PHA accumulation, measured as relative fluorescence intensity, resulted in a steady-state concentration after 48 h of incubation in all strains assayed. At 72 h, the maximum fluorescence intensity of each strain incubated with glucose and fructose was usually similar. MAT-28 strain accumulated more PHA than the other isolates. The results show that data obtained from environmental isolates can highly improve studies based on modeling-simulation programs, and that microbial mats constitute an excellent source for the isolation of PHA-producing strains with industrial applications.

Estimated post-Messinian sediment supply and sedimentation rates on the Ebro continental margin, Spain

USGS Publications Warehouse

Nelson, C.H.

1990-01-01

Because of the extensive data base of seismic profiles, radiometric ages, and stratigraphic time markers such as the subaerial Messinian surface, sedimentation rates and Ebro River sediment discharge can be estimated for different periods and environments of the Ebro continental margin. New values for sediment discharge (i.e., 6.2 versus previous estimates of 2-3.5 million t/yr) for the Holocene highstand are more reliable but remain minimum estimates because a small proportion of Ebro sediment advected to the Balearic Rise and Abyssal Plain cannot be accounted for, especially during lowstands. The general highstand conditions of the Pliocene, which were similar to those of the Holocene, resulted in a low discharge of Ebro River sediment (ca. 6.5 million t/yr) and an even thickness of sediment across the margin that deposited at rates of about 24-40 cm/ky. In contrast, sediment supply increased two-three times during the Pleistocene, the margin prograded rapidly and deposition occurred at rates of 101-165 cm/ky on the outer shelf and slope, but basin floor rates remained anomalously low (21-26 cm/ky) because sediment was drained and broadly dispersed eastward in Valencia Trough. During the late Pleistocene rise of sea level, the main depocenters progressively shifted shoreward and sedimentation rates greatly decreased from 175 cm/ky on the upper slope during the early transgression to 106 cm/ky on the outer shelf and then to 63 cm/ky on the mid-shelf during the late transgression as the river sediment discharge dropped to half by Holocene time. Maximal sedimentation rates occurred in active depocenters of sediment dispersal such as the Holocene delta (370 cm/ky) or the youngest Pleistocene Oropesa channel-levee complex (705 cm/ky) where deposition rates increased by an order of magnitude or more compared to average Ebro shelf (38 cm/ky) or base-of-slope rates in the Pleistocene (21 cm/ky). The sedimentation rates verify the importance of sea-level control on the progressive change in location of depocenters and amount of sediment supply, but Pleistocene climatic change and deforestation alone can be observed to double river sediment discharge. The latter observation helps explain the anomalously high deposition rates in Pleistocene turbidite systems compared with older systems that may be controlled more by tectonic and sea-level changes alone. During the past 2000 years, in contrast, man has controlled deposition in the Ebro margin system, first by deforestation that more than doubled river sediment discharge and shelf deposition rates to equal those of Pleistocene time; and second by dam contruction that reduced sediment discharge to less than 5% of the normal Holocene discharge. Similar recent discharge reductions from the Nile and Rhone Rivers suggest that loss of the majority of the river sediment supply in the Mediterranean Sea may result in significant erosion of biologically and agriculturally important lobate delta areas. ?? 1990.

Role of Geitlerinema sp. DE2011 and Scenedesmus sp. DE2009 as Bioindicators and Immobilizers of Chromium in a Contaminated Natural Environment.

PubMed

Millach, Laia; Solé, Antoni; Esteve, Isabel

2015-01-01

The aim of this work was to study the potential of the two phototrophic microorganisms, both isolated from Ebro Delta microbial mats, to be used as bioindicators and immobilizers of chromium. The results obtained indicated that (i) the Minimum Metal Concentration (MMC) significantly affecting Chlorophyll a intensity in Geitlerinema sp. DE2011 and Scenedesmus sp. DE2009 was 0.25 µM and 0.75 µM, respectively, these values being lower than those established by current legislation, and (ii) Scenedesmus sp. DE2009 was able to immobilize chromium externally in extracellular polymeric substances (EPS) and intracellularly in polyphosphate (PP) inclusions. Additionally, this microorganism maintained high viability, including at 500 µM. Based on these results, we postulate that Geitlerinema sp. DE2011 and Scenedesmus sp. DE2009 are good chromium-indicators of cytotoxicity and, further, that Scenedesmus sp. DE2009 plays an important role in immobilizing this metal in a contaminated natural environment.

Role of Geitlerinema sp. DE2011 and Scenedesmus sp. DE2009 as Bioindicators and Immobilizers of Chromium in a Contaminated Natural Environment

PubMed Central

2015-01-01

The aim of this work was to study the potential of the two phototrophic microorganisms, both isolated from Ebro Delta microbial mats, to be used as bioindicators and immobilizers of chromium. The results obtained indicated that (i) the Minimum Metal Concentration (MMC) significantly affecting Chlorophyll a intensity in Geitlerinema sp. DE2011 and Scenedesmus sp. DE2009 was 0.25 µM and 0.75 µM, respectively, these values being lower than those established by current legislation, and (ii) Scenedesmus sp. DE2009 was able to immobilize chromium externally in extracellular polymeric substances (EPS) and intracellularly in polyphosphate (PP) inclusions. Additionally, this microorganism maintained high viability, including at 500 µM. Based on these results, we postulate that Geitlerinema sp. DE2011 and Scenedesmus sp. DE2009 are good chromium-indicators of cytotoxicity and, further, that Scenedesmus sp. DE2009 plays an important role in immobilizing this metal in a contaminated natural environment. PMID:26167488

Seagrass epiphytic assemblages are strong indicators of agricultural discharge but weak indicators of host features

NASA Astrophysics Data System (ADS)

Prado, Patricia

2018-05-01

Wastewater pulses from rice agriculture are persistently discharged into the northern shore of the Alfacs Bay (Ebro Delta, NW Mediterranean) from April to November. The bay also receives water from coastal lagoons which are subjected to freshwater inputs from the Ebro River mixed to an unknown extent with agricultural wastewater during the same period. This paper compares epiphyte assemblages growing on leaves of Cymodocea nodosa in sites exposed to agricultural drainage channels, lagoon connection channels, and control sites in the Ebro Delta Natural Park (southern shore of the bay). Leaf epiphytic assemblages of Zostera noltii patches in the northern shore of the bay were also compared with those of adjacent beds of C. nodosa. Drainage channel sites had consistently distinctive assemblages (higher species richness, biomass load, and taxa composition) than control sites. Assemblages from lagoon channel sites were more variable, with three sites showing particularly high covers of epiphytic algae and two sites more similar to controls. Epiphyte patterns clearly matched in situ measures of nutrient availability, and were consistent with decreased shoot densities in discharge sites. In contrast, differences in epiphyte assemblages between seagrass species were minor, and mostly a result of higher epiphytic loads on C. nodosa than on Z. noltii, which features thinner leaves. Further research is needed to investigate the consequences of these plant and epiphyte alterations in important ecosystem processes such as decomposition and export rates, as well as overall effects of nutrients and salinity in secondary producers such as associated macroinvertebrate assemblages supporting locally important marine fisheries.

Evaluation of the effect of temperature, pH, and bioproduction on Hg concentration in sediments, water, molluscs and algae of the delta of the Ebro river.

PubMed

Schuhmacher, M; Domingo, J L; Llobet, J M; Corbella, J

1993-01-01

The effects of temperature, pH, and bioproduction on mercury levels in sediments, water, molluscs and algae from the delta of the Ebro river (NE Spain) were determined in this study. Mercury concentrations were measured in a cold-vapor atomic absorption spectrophotometer. The ranges of mercury concentrations were the following: sediments, 0.014-0.185 microgram g-1; water, 0.001-0.018 microgram g-1; molluscs, 0.118-0.861 microgram g-1; and algae 0.008-0.026 microgram g-1. Although not statistically significant, a decrease in the pH of the water corresponded with a diminution in the content of mercury in sediments and molluscs, while the mercury levels in water and algae were lower in the areas with high levels of bioproduction. The concentrations of mercury in water significantly decreased with temperature. However, the differences with temperature of the mercury concentrations in sediments did not reach the level of significance. Consequently, water would not be an adequate indicator to determine the levels of mercury contamination, although both sediments and molluscs can be used for this purpose.

Enantiomeric fraction and isomeric composition to assess sources of DDT residues in soils.

PubMed

Bosch, Carme; Grimalt, Joan O; Fernández, Pilar

2015-11-01

Chiral pesticides such as o,p'-DDT can undergo enantioselective microbial degradation in soil. Hence, the enantiomeric fraction (EF) of o,p'-DDT was used as an approach to assess potential recent inputs of DDT in the lower part of the Ebro River basin (NE Spain), a region heavily impacted by agricultural and industrial activities, including a dicofol production and a chloro-alkali plants. The EFs of five out of nineteen soils were not different from the racemic value (0.505±0.010), confirming that the Ebro River and some of its tributaries, Segre and Cinca rivers, transported fresh DDT residues despite its ban in Spain during the 90 s. o,p'-DDT/p,p'-DDT ratios in soils suggest that recent use of technical DDT and/or DDT-contaminated dicofol may be responsible for the fresh DDT inputs in the Segre River, while in the Ebro River, they indicate a dominant contribution of technical DDT, likely related to the residues accumulated by the chloro-alkali plant discharges. Copyright © 2015 Elsevier Ltd. All rights reserved.

Man made deltas?

NASA Astrophysics Data System (ADS)

Maselli, V.; Trincardi, F.

2014-12-01

During the last few millennia, southern European fluvio-deltaic systems have evolved in response to changes in the hydrological cycle, mostly driven by high-frequency climate oscillations and increasing anthropic pressure on natural landscapes. The review of geochronological and historical data documents that the bulk of the four largest northern Mediterranean and Black Sea deltas (Ebro, Rhone, Po and Danube) formed during two short and synchronous intervals during which anthropogenic land cover change was the main driver for enhanced sediment production. These two major growth phases occurred under contrasting climatic regimes and were both followed by generalized delta retreat, supporting the hypothesis of human-driven delta progradation. Delta retreat, in particular, was the consequence of reduced soil erosion for renewed afforestation after the fall of the Roman Empire, and of river dams construction that overkilled the still increasing sediment production in catchment basins since the Industrial Era. In this second case, in particular, the effect of a reduced sediment flux to the coasts is amplified by the sinking of modern deltas, due to land subsidence and sea level rise, that hampers delta outbuilding and increases the vulnerability of coastal zone to marine erosion and flooding.

Gillnet selectivity in the Ebro Delta coastal lagoons and its implication for the fishery management of the sand smelt, Atherina boyeri (Actinopterygii: Atherinidae)

NASA Astrophysics Data System (ADS)

Rodríguez-Climent, Sílvia; Alcaraz, Carles; Caiola, Nuno; Ibáñez, Carles; Nebra, Alfonso; Muñoz-Camarillo, Gloria; Casals, Frederic; Vinyoles, Dolors; de Sostoa, Adolfo

2012-12-01

Multimesh nylon gillnets were set in three Ebro Delta (North-East of Spain) lagoons to determine mesh selectivity for the inhabiting fish community. Each gillnet consisted on a series of twelve panels of different mesh size (ranging from 5.0 to 55.0 mm bar length) randomly distributed. The SELECT method (Share Each Length's Catch Total) was used to estimate retention curves through five models: normal location, normal scale, gamma, lognormal and inverse Gaussian. Each model was fitted twice, under the assumptions of equal and proportional to mesh size fishing effort, but no differences were found between approaches. A possible situation of overfishing in the lagoons, where artisanal fisheries are carried out with a low surveillance effort, was assessed using a vulnerable species inhabiting these brackish waters as case study: the sand smelt, Atherina boyeri. The minimum size for its fishery has not been established, thus remaining under an uncontrolled exploitation situation. Therefore, a Minimum Landing Size (MLS) is proposed based on sexual maturity data. The importance of establishing an adequate MLS and regulate mesh sizes in order to respect natural maturation length is discussed, as well as, the proposal of other measures to improve A. boyeri fishery management.

Bacterial community composition characterization of a lead-contaminated Microcoleus sp. consortium.

PubMed

Giloteaux, Ludovic; Solé, Antoni; Esteve, Isabel; Duran, Robert

2011-08-01

A Microcoleus sp. consortium, obtained from the Ebro delta microbial mat, was maintained under different conditions including uncontaminated, lead-contaminated, and acidic conditions. Terminal restriction fragment length polymorphism and 16S rRNA gene library analyses were performed in order to determine the effect of lead and culture conditions on the Microcoleus sp. consortium. The bacterial composition inside the consortium revealed low diversity and the presence of specific terminal-restriction fragments under lead conditions. 16S rRNA gene library analyses showed that members of the consortium were affiliated to the Alpha, Beta, and Gammaproteobacteria and Cyanobacteria. Sequences closely related to Achromobacter spp., Alcaligenes faecalis, and Thiobacillus species were exclusively found under lead conditions while sequences related to Geitlerinema sp., a cyanobacterium belonging to the Oscillatoriales, were not found in presence of lead. This result showed a strong lead selection of the bacterial members present in the Microcoleus sp. consortium. Several of the 16S rRNA sequences were affiliated to nitrogen-fixing microorganisms including members of the Rhizobiaceae and the Sphingomonadaceae. Additionally, confocal laser scanning microscopy and scanning and transmission electron microscopy showed that under lead-contaminated condition Microcoleus sp. cells were grouped and the number of electrodense intracytoplasmic inclusions was increased.

Assessing Flood Risk Under Sea Level Rise and Extreme Sea Levels Scenarios: Application to the Ebro Delta (Spain)

NASA Astrophysics Data System (ADS)

Sayol, J. M.; Marcos, M.

2018-02-01

This study presents a novel methodology to estimate the impact of local sea level rise and extreme surges and waves in coastal areas under climate change scenarios. The methodology is applied to the Ebro Delta, a valuable and vulnerable low-lying wetland located in the northwestern Mediterranean Sea. Projections of local sea level accounting for all contributions to mean sea level changes, including thermal expansion, dynamic changes, fresh water addition and glacial isostatic adjustment, have been obtained from regionalized sea level projections during the 21st century. Particular attention has been paid to the uncertainties, which have been derived from the spread of the multi-model ensemble combined with seasonal/inter-annual sea level variability from local tide gauge observations. Besides vertical land movements have also been integrated to estimate local relative sea level rise. On the other hand, regional projections over the Mediterranean basin of storm surges and wind-waves have been used to evaluate changes in extreme events. The compound effects of surges and extreme waves have been quantified using their joint probability distributions. Finally, offshore sea level projections from extreme events superimposed to mean sea level have been propagated onto a high resolution digital elevation model of the study region in order to construct flood hazards maps for mid and end of the 21st century and under two different climate change scenarios. The effect of each contribution has been evaluated in terms of percentage of the area exposed to coastal hazards, which will help to design more efficient protection and adaptation measures.

Spring and Summer Proliferation of Floating Macroalgae in a Mediterranean Coastal Lagoon (Tancada Lagoon, Ebro Delta, NE Spain)

NASA Astrophysics Data System (ADS)

Menéndez, M.; Comín, F. A.

2000-08-01

During the last 10 years, a drastic change in the structure of the community of primary producers has been observed in Tancada Lagoon (Ebro Delta, NE Spain). This consisted of a decrease in the abundance of submerged rooted macrophyte cover and a spring and summer increase in floating macroalgae. Two spatial patterns have been observed. In the west part of the lagoon, Chaetomorpha linum Kützing, dominated during winter and decreased progressively in spring when Cladophora sp. reached its maximum development. In the east part of the lagoon, higher macroalgal diversity was observed, together with lower cover in winter and early spring. Cladophora sp., Gracilaria verrucosa Papenfuss and Chondria tenuissima Agardh, increased cover and biomass in summer. Maximum photosynthetic production was observed in spring for G. verrucosa (10·9 mg O 2 g -1 DW h -1) and C. tenuissima (19·0 mg O 2 g -1 DW h -1) in contrast with Cladophora sp. (15·9 mg O 2 g -1 DW h -1) and Chaetomorpha linum (7·2 mg O 2 g -1 DW h -1) which reached maximum production in summer. Increased conductivity from reduced freshwater inflow, and higher water temperatures during periods of lagoon isolation, mainly in summer, were the main physical factors associated with an increase in floating macroalgal biomass across the lagoon. Reduced nitrogen availability and temperature-related changes in carbon availability during summer were related to a decrease in abundance of C. linum and increases in G. verrucosa and Cladophora sp.

Viability and biomass of Micrococcus luteus DE2008 at different salinity concentrations determined by specific fluorochromes and CLSM-image analysis.

PubMed

Puyen, Zully M; Villagrasa, Eduard; Maldonado, Juan; Esteve, Isabel; Solé, Antonio

2012-01-01

In previous studies, our group developed a method based on Confocal Laser Scanning Microscopy and Image Analysis (CLSM-IA) to analyze the diversity and biomass of cyanobacteria in microbial mats. However, this method cannot be applied to heterotrophic microorganisms, as these do not have autofluorescence. In this article, we present a method that combines CLSM-IA and Hoechst 33342 and SYTOX Green fluorochromes (FLU-CLSM-IA) to determine the viability and biomass of Micrococcus luteus DE2008, isolated from a saline microbial mat (Ebro Delta, Tarragona, Spain). The method has been applied to assess the effect of salinity on this microorganism. A reduction in viability and biomass (live cells) was observed as the salt concentration increases. The largest effect was at 100‰ NaCl with a cell death of 27.25% and a decrease in total and individual biomass of 39.75 and 0.009 mgC/cm(3), respectively, both with respect to optimal growth (10 ‰ NaCl). On the other hand, another important contribution of this article was that combining the FLU-CLSM-IA results with those achieved by plate counts enabled us to determine, for first time, the viability and the total biomass of the "dormant cells" (66.75% of viability and 40.59 mgC/cm(3) of total biomass at 100‰ NaCl). FLU-CLSM-IA is an efficient, fast, and reliable method for making a total count of cells at pixel level, including the dormant cells, to evaluate the viability and the biomass of a hetetrophic microorganism, M. luteus DE2008.

Mitochondrial DNA from the eradicated European Plasmodium vivax and P. falciparum from 70-year-old slides from the Ebro Delta in Spain

PubMed Central

Gelabert, Pere; Sandoval-Velasco, Marcela; Olalde, Iñigo; Fregel, Rosa; Rieux, Adrien; Escosa, Raül; Aranda, Carles; Paaijmans, Krijn; Mueller, Ivo; Gilbert, M. Thomas P.; Lalueza-Fox, Carles

2016-01-01

Phylogenetic analysis of Plasmodium parasites has indicated that their modern-day distribution is a result of a series of human-mediated dispersals involving transport between Africa, Europe, America, and Asia. A major outstanding question is the phylogenetic affinity of the malaria causing parasites Plasmodium vivax and falciparum in historic southern Europe—where it was endemic until the mid-20th century, after which it was eradicated across the region. Resolving the identity of these parasites will be critical for answering several hypotheses on the malaria dispersal. Recently, a set of slides with blood stains of malaria-affected people from the Ebro Delta (Spain), dated between 1942 and 1944, have been found in a local medical collection. We extracted DNA from three slides, two of them stained with Giemsa (on which Plasmodium parasites could still be seen under the microscope) and another one consisting of dried blood spots. We generated the data using Illumina sequencing after using several strategies aimed at increasing the Plasmodium DNA yield: depletion of the human genomic (g)DNA content through hybridization with human gDNA baits, and capture-enrichment using gDNA derived from P. falciparum. Plasmodium mitochondrial genome sequences were subsequently reconstructed from the resulting data. Phylogenetic analysis of the eradicated European P. vivax mtDNA genome indicates that the European isolate is closely related to the most common present-day American haplotype and likely entered the American continent post-Columbian contact. Furthermore, the European P. falciparum mtDNA indicates a link with current Indian strains that is in agreement with historical accounts. PMID:27671660

Mitochondrial DNA from the eradicated European Plasmodium vivax and P. falciparum from 70-year-old slides from the Ebro Delta in Spain.

PubMed

Gelabert, Pere; Sandoval-Velasco, Marcela; Olalde, Iñigo; Fregel, Rosa; Rieux, Adrien; Escosa, Raül; Aranda, Carles; Paaijmans, Krijn; Mueller, Ivo; Gilbert, M Thomas P; Lalueza-Fox, Carles

2016-10-11

Phylogenetic analysis of Plasmodium parasites has indicated that their modern-day distribution is a result of a series of human-mediated dispersals involving transport between Africa, Europe, America, and Asia. A major outstanding question is the phylogenetic affinity of the malaria causing parasites Plasmodium vivax and falciparum in historic southern Europe-where it was endemic until the mid-20th century, after which it was eradicated across the region. Resolving the identity of these parasites will be critical for answering several hypotheses on the malaria dispersal. Recently, a set of slides with blood stains of malaria-affected people from the Ebro Delta (Spain), dated between 1942 and 1944, have been found in a local medical collection. We extracted DNA from three slides, two of them stained with Giemsa (on which Plasmodium parasites could still be seen under the microscope) and another one consisting of dried blood spots. We generated the data using Illumina sequencing after using several strategies aimed at increasing the Plasmodium DNA yield: depletion of the human genomic (g)DNA content through hybridization with human gDNA baits, and capture-enrichment using gDNA derived from P. falciparum Plasmodium mitochondrial genome sequences were subsequently reconstructed from the resulting data. Phylogenetic analysis of the eradicated European P. vivax mtDNA genome indicates that the European isolate is closely related to the most common present-day American haplotype and likely entered the American continent post-Columbian contact. Furthermore, the European P. falciparum mtDNA indicates a link with current Indian strains that is in agreement with historical accounts.

Determination of microbial carbon sources and cycling during remediation of petroleum hydrocarbon impacted soil using natural abundance (14)C analysis of PLFA.

PubMed

Cowie, Benjamin R; Greenberg, Bruce M; Slater, Gregory F

2010-04-01

In a petroleum impacted land-farm soil in Sarnia, Ontario, compound-specific natural abundance radiocarbon analysis identified biodegradation by the soil microbial community as a major pathway for hydrocarbon removal in a novel remediation system. During remediation of contaminated soils by a plant growth promoting rhizobacteria enhanced phytoremediation system (PEPS), the measured Delta(14)C of phospholipid fatty acid (PLFA) biomarkers ranged from -793 per thousand to -897 per thousand, directly demonstrating microbial uptake and utilization of petroleum hydrocarbons (Delta(14)C(PHC) = -1000 per thousand). Isotopic mass balance indicated that more than 80% of microbial PLFA carbon was derived from petroleum hydrocarbons (PHC) and a maximum of 20% was obtained from metabolism of more modern carbon sources. These PLFA from the contaminated soils were the most (14)C-depleted biomarkers ever measured for an in situ environmental system, and this study demonstrated that the microbial community in this soil was subsisting primarily on petroleum hydrocarbons. In contrast, the microbial community in a nearby uncontaminated control soil maintained a more modern Delta(14)C signature than total organic carbon (Delta(14)C(PLFA) = +36 per thousand to -147 per thousand, Delta(14)C(TOC) = -148 per thousand), indicating preferential consumption of the most modern plant-derived fraction of soil organic carbon. Measurements of delta(13)C and Delta(14)C of soil CO(2) additionally demonstrated that mineralization of PHC contributed to soil CO(2) at the contaminated site. The CO(2) in the uncontaminated control soil exhibited substantially more modern Delta(14)C values, and lower soil CO(2) concentrations than the contaminated soils, suggesting increased rates of soil respiration in the contaminated soils. In combination, these results demonstrated that biodegradation in the soil microbial community was a primary pathway of petroleum hydrocarbon removal in the PEPS system. This study highlights the power of natural abundance radiocarbon for determining microbial carbon sources and identifying biodegradation pathways in complex remediation systems.

[The Ebro River and the Camino de Santiago].

PubMed

Cuchí de la Cuesta, Carlos

2003-01-01

Humans travel for many reasons; here we concentrate in pilgrimage and the role of the Ebro River as their means of transportation. The Camino de Santiago through the Ebro is linked to the devotion to Santa María del Pilar de Zaragoza, where according to the tradition appeared in flesh and body (January 2, 40, BC). Famous pilgrims are Luis VII of France, Lady Blanca, daughter of Carlos III. The Ebro's navigability allowed sustaining the fervor alive as it is proven by the many records found Catón, Estrabrón, Plinio, Avieno) describing its use for pilgrimage and commercial purposes.

Toxic elements and speciation in seafood samples from different contaminated sites in Europe.

PubMed

Maulvault, Ana Luísa; Anacleto, Patrícia; Barbosa, Vera; Sloth, Jens J; Rasmussen, Rie Romme; Tediosi, Alice; Fernandez-Tejedor, Margarita; van den Heuvel, Fredericus H M; Kotterman, Michiel; Marques, António

2015-11-01

The presence of cadmium (Cd), lead (Pb), mercury (THg), methylmercury (MeHg), arsenic (TAs), inorganic arsenic (iAs), cobalt (Co), copper (Cu), zinc (Zn), nickel (Ni), chromium (Cr) and iron (Fe) was investigated in seafood collected from European marine ecosystems subjected to strong anthropogenic pressure, i.e. hotspot areas. Different species (Mytilus galloprovincialis, n=50; Chamelea gallina, n=50; Liza aurata, n=25; Platichthys flesus, n=25; Laminaria digitata, n=15; and Saccharina latissima, n=15) sampled in Tagus estuary, Po delta, Ebro delta, western Scheldt, and in the vicinities of a fish farm area (Solund, Norway), between September and December 2013, were selected to assess metal contamination and potential risks to seafood consumers, as well as to determine the suitability of ecologically distinct organisms as bioindicators in environmental monitoring studies. Species exhibited different elemental profiles, likely as a result of their ecological strategies, metabolism and levels in the environment (i.e. seawater and sediments). Higher levels of Cd (0.15-0.94 mg kg(-1)), Pb (0.37-0.89 mg kg(-1)), Co (0.48-1.1 mg kg(-1)), Cu (4.8-8.4 mg kg(-1)), Zn (75-153 mg kg(-1)), Cr (1.0-4.5 mg kg(-1)) and Fe (283-930 mg kg(-1)) were detected in bivalve species, particularly in M. galloprovincialis from Ebro and Po deltas, whereas the highest content of Hg was found in P. flesus (0.86 mg kg(-1)). In fish species, most Hg was organic (MeHg; from 69 to 79%), whereas lower proportions of MeHg were encountered in bivalve species (between 20 and 43%). The highest levels of As were found in macroalgae species L. digitata and S. latissima (41 mg kg(-1) and 43 mg kg(-1), respectively), with iAs accounting almost 50% of the total As content in L. digitata but not with S. latissima nor in the remaining seafood samples. This work highlights that the selection of the most appropriate bioindicator species is a fundamental step in environmental monitoring of each contaminant, especially in coastal areas. Furthermore, data clearly shows that the current risk assessment and legislation solely based on total As or Hg data is limiting, as elemental speciation greatly varies according to seafood species, thus playing a key role in human exposure assessment via food. Copyright © 2015. Published by Elsevier Inc.

Patterns of human occupation during the early Holocene in the Central Ebro Basin (NE Spain) in response to the 8.2 ka climatic event

NASA Astrophysics Data System (ADS)

González-Sampériz, P.; Utrilla, P.; Mazo, C.; Valero-Garcés, B.; Sopena, MC.; Morellón, M.; Sebastián, M.; Moreno, A.; Martínez-Bea, M.

2009-03-01

The Central Ebro River Basin (NE Spain) is the most northern area of truly semi-arid Mediterranean climate in Europe and prehistoric human occupation there has been strongly influenced by this extreme environmental condition. Modern climate conditions single out this region due to the harsh environment, characterised by the highest absolute summer temperatures of the Ebro River Basin. The Bajo Aragón region (SE Ebro River Basin) was intensively populated during the Early Holocene (9400-8200 cal yr BP) but the settlements were abandoned abruptly at around 8200 cal yr BP. We propose that this "archaeological silence" was caused by the regional impact of the global abrupt 8.2 ka cold event. Available regional paleoclimate archives demonstrate the existence of an aridity crisis then that interrupted the humid Early Holocene. That environmental crisis would have forced hunter-gatherer groups from the Bajo Aragón to migrate to regions with more favourable conditions (i.e. more humid mountainous areas) and only return in the Neolithic. Coherently, archaeological sites persist during this crisis in the nearby Iberian Range (Maestrazgo) and the North Ebro River area (Pre-Pyrenean mountains and along the northwestern Ebro Basin).

Sympatric and allopatric experimental infections of the planorbid snail Gyraulus chinensis with miracidia of Euparyphium albuferensis (Trematoda: Echinostomatidae).

PubMed

Muñoz-Antoli, C; Marín, A; Trelis, M; Toledo, R; Esteban, J-G

2010-12-01

An experimental infection with echinostomatid miracidia in sympatric or 'local' vs. allopatric or 'away' snail combinations, as a model to examine parasite compatibility, was carried out. We employed Euparyphium albuferensis miracidia to infect Gyraulus chinensis snails, from three different natural parks: Albufera (Valencia, Spain); the Ebro Delta (Tarragona, Spain) and Coto de Doñana (Huelva, Spain). Insignificant differences between the three snail strains were noted for the infection rate and the rhythm of daily cercarial production. However, a significantly higher total cercarial production per snail, patent period and life span were observed in local snails. The different infection characteristics in the three G. chinensis strains considered reveal that E. albuferensis miracidia demonstrate local adaptation.

Recent floods in the Middle Ebro River, Spain: hydrometeorological aspects and floodplain management

NASA Astrophysics Data System (ADS)

Domenech, S.; Espejo, F.; Ollero, A.; Sánchez-Fabre, M.

2009-09-01

The Ebro River has the largest Mediterranean basin in the Iberian Peninsula and the third one by surface among those of the Mediterranean Sea. The middle stretch of this river is especially interesting because it constitutes a very economically important axis of population in a semi-arid environment context. Flooding processes are common in the Middle Ebro River, but the combination among decrease of discharges, dam construction and expansion and reinforcement of defences created an unusually quiet period as regards flooding events during the last quarter of the previous century. Nevertheless, with the turn of the century it seems that the Middle Ebro River has entered into new dynamics, with bigger and more frequent floods, the appearance of which has changed its seasonal nature. The most relevant examples are those of February 2003 and March-April 2007. The present paper examines these recent trends and discusses their possible causes from the points of view of hydro-meteorology, flood management through the use of reservoirs, and floodplain management. The consequences of recent floods in the Middle Ebro River have reopened the debate about possible risk management measures.

Microbial diversity in restored wetlands of San Francisco Bay

DOE Office of Scientific and Technical Information (OSTI.GOV)

Theroux, Susanna; Hartman, Wyatt; He, Shaomei

Wetland ecosystems may serve as either a source or a sink for atmospheric carbon and greenhouse gases. This delicate carbon balance is influenced by the activity of belowground microbial communities that return carbon dioxide and methane to the atmosphere. Wetland restoration efforts in the San Francisco Bay-Delta region may help to reverse land subsidence and possibly increase carbon storage in soils. However, the effects of wetland restoration on microbial communities, which mediate soil metabolic activity and carbon cycling, are poorly studied. In an effort to better understand the underlying factors which shape the balance of carbon flux in wetland soils,more » we targeted the microbial communities in a suite of restored and historic wetlands in the San Francisco Bay-Delta region. Using DNA and RNA sequencing, coupled with greenhouse gas monitoring, we profiled the diversity and metabolic potential of the wetland soil microbial communities along biogeochemical and wetland age gradients. Our results show relationships among geochemical gradients, availability of electron acceptors, and microbial community composition. Our study provides the first genomic glimpse into microbial populations in natural and restored wetlands of the San Francisco Bay-Delta region and provides a valuable benchmark for future studies.« less

Perennial Lakeshores as an Exploration Target for Microbial Remains on Mars Based on Earth Analogs

NASA Astrophysics Data System (ADS)

Blair, T. C.

2013-12-01

Exploring for evidence of present or past life is a key part of the NASA Mars program. Satellite data show the existence on the Martian surface of several types of potentially habitable settings for past microbial life if it existed, including remnants of former environments still in morphologic context. Of these environments, lakeshores are a prime target for future rover missions because they manifest a past critical interface between atmosphere, sunlit water, and a solid substrate. Case studies were made of possible analog remnants from now desiccated late Pleistocene perennial lakes of the western Basin and Range province, USA, to better understand microbial remains in this setting. These case studies show that the best preserved and most concentrated records of fossil microbial life developed in the upper photic zone of former shorezones where: 1) coeval clastic sedimentation was low; 2) a solid substrate such as coarse clasts or bedrock was present for colonization; 3) lake level was relatively stable for at least a few thousand years; and 4) chemical conditions promoted some mineral precipitation, such as of calcite. Although not a prerequisite, microbial accumulations also are common in the studied Pleistocene lakes where effluent from piedmont groundwater mixed with chemically different lake water either diffusely in the beachface or at springs in the shoreface. Martian river deltas with discernible multi-sequence deposits are a good indicator of past stable levels in associated lakes because such deltaic intervals record a sustained history. An example is the Eberswalde delta. River discharge delivered sediment to build the deltas and concurrently added water to maintain the lakes. A distinction between river deltas and alluvial fans or fan deltas is necessary to identify these targets, and this can easily be achieved using Earth case studies. An appreciation that river deltas are not reclassified as alluvial fans simply because they were abandoned also is needed. Although Martian river delta plain, delta front, and prodelta deposits may contain the remains of microbial life if it existed at the time of deposition, the studied western Basin and Range lakes show that such remains are most abundant and concentrated along former coarse gravelly or rocky shorelines away from the delta, where clear water and a stable substrate prevailed, and fossil dilution by detrital input was low. The elevations of the delta plains provide the target levels for shoreline exploration elsewhere along the lake. The extinct western Basin and Range lakes, such as Lake Manly in Death Valley, further teach that former shorelines readily apparent on satellite imagery may lack a biological or sedimentary record, whereas less obvious or unapparent shoreline segments at key levels may have a bounty of microbial remains. The latter scenario results from partial obscuration of the former shoreline by post-lake weathering, including through erosion or the partial cover by eolian or gravity-driven colluvial sediment.

Sedimentary evolution of the Pliocene and Pleistocene Ebro margin, northeastern Spain

USGS Publications Warehouse

Alonso, B.; Field, M.E.; Gardner, J.V.; Maldonado, A.

1990-01-01

The Pliocene and Pleistocene deposits of the Spanish Ebro margin overlie a regional unconformity and contain a major disconformity. These unconformities, named Reflector M and Reflector G, mark the bases of two seismic sequences. Except for close to the upper boundary where a few small channel deposits are recognized, the lower sequence lacks channels. The upper sequence contains nine channel-levee complexes as well as base-of-slope aprons that represent the proximal part of the Valencia turbidite system. Diverse geometries and variations in seismic units distinguish shelf, slope, base-of-slope and basin-floor facies. Four events characterize the late Miocene to Pleistocene evolution of the Ebro margin: (a) formation of a paleodrainage system and an extensive erosion-to-depositional surface during the latest Miocene (Messinian), (b) deposition of hemipelagic units during the early Pliocene, (c) development of canyons during the late Pliocene to early Pleistocene, and (d) deposition of slope wedges, channel-levee complexes, and base-of-slope aprons alternating with hemipelagic deposition during the Pleistocene. Sea-level fluctuations influenced the evolution of the sedimentary sequences of the Ebro margin, but the major control was the sediment supply from the Ebro River. ?? 1990.

Drainage reorganization and divide migration induced by the excavation of the Ebro basin (NE Spain)

NASA Astrophysics Data System (ADS)

Vacherat, Arnaud; Bonnet, Stéphane; Mouthereau, Frédéric

2018-05-01

Intracontinental endorheic basins are key elements of source-to-sink systems as they preserve sediments eroded from the surrounding catchments. Drainage reorganization in such a basin in response to changing boundary conditions has strong implications on the sediment routing system and on landscape evolution. The Ebro and Duero basins represent two foreland basins, which developed in response to the growth of surrounding compressional orogens, the Pyrenees and the Cantabrian mountains to the north, the Iberian Ranges to the south, and the Catalan Coastal Range to the east. They were once connected as endorheic basins in the early Oligocene. By the end of the Miocene, new post-orogenic conditions led to the current setting in which the Ebro and Duero basins are flowing in opposite directions, towards the Mediterranean Sea and the Atlantic Ocean. Although these two hydrographic basins recorded a similar history, they are characterized by very different morphologic features. The Ebro basin is highly excavated, whereas relicts of the endorheic stage are very well preserved in the Duero basin. The contrasting morphological preservation of the endorheic stage represents an ideal natural laboratory to study the drivers (internal and/or external) of post-orogenic drainage divide mobility, drainage network, and landscape evolution. To that aim, we use field and map observations and we apply the χ analysis of river profiles along the divide between the Ebro and Duero drainage basins. We show here that the contrasting excavation of the Ebro and Duero basins drives a reorganization of their drainage network through a series of captures, which resulted in the southwestward migration of their main drainage divide. Fluvial captures have a strong impact on drainage areas, fluxes, and their respective incision capacity. We conclude that drainage reorganization driven by the capture of the Duero basin rivers by the Ebro drainage system explains the first-order preservation of endorheic stage remnants in the Duero basin, due to drainage area loss, independently from tectonics and climate.

Onset and Dynamics of a Subaqueous Dune Field in a Tideless Erosional Deltaic Shoreface: an Analog for the Initial Development of Sand Ridges

NASA Astrophysics Data System (ADS)

Guerrero, Q.; Guillén, J.; Durán, R.; Urgeles, R.

2016-12-01

A subaqueous dune field located over a retreating deltaic lobe in the Ebro delta (NW Mediterranean) is morphodynamically characterized by analyzing three sets of co-located, multibeam bathymetric data acquired in 2004, 2013 and 2015, measurements of near-bottom currents and suspended sediment concentrations, high-resolution seismic profiles and aerial photographs. The dunes, made of fine sand, extend from 5 to 15 m water depth, have straight crestlines and maximum heights and wavelengths of 2.5 and 350 m, respectively (Fig. 1). Results suggest that the onset of dune field development is closely related to the contemporary evolution of the Ebro delta. A change in the main river channel in the 1940s led to the progressive abandonment of the former river mouth, severe coastal retreatment ( 37 m·y-1) and increased sediment availability. The characteristic NW winds of the region induce near-bottom currents flowing towards the SE which are able to rework and transport these sediments. The dune field developed over the shoreface of the abandoned river mouth and is currently active with mean SE migration rates of 10 m·y-1, most likely when high-energetic currents occur. The morphology of the dune field and crestline obliquity to shoreline orientation agree well with that observed in sand ridges of continental shelves worldwide. Mid-outer shelf sand ridges have been interpreted as sedimentary bodies formed in coastal waters and detached from the coast during sea level rise. The studied dune field could therefore be an example of the initial stages of sand ridges development when large amounts of sand are suddenly available. The field developed when the river mouth switched, favored by a pre-existing seafloor irregularity. Despite the time-scale for the genesis and evolution of shoreface sand ridges has been set in time-scales of hundreds/thousands of years, this study shows that shoreface sand ridges can develop during shorter time-scales (tens of years). Furthermore, it is discussed that, in absence of a rapid sea level rise, these sand ridges probably will vanish as a consequence of sediment scarcity and wave reworking.

Malaria resurgence risk in southern Europe: climate assessment in an historically endemic area of rice fields at the Mediterranean shore of Spain.

PubMed

Sainz-Elipe, Sandra; Latorre, Jose Manuel; Escosa, Raul; Masià, Montserrat; Fuentes, Marius Vicent; Mas-Coma, Santiago; Bargues, Maria Dolores

2010-07-31

International travel and immigration have been related with an increase of imported malaria cases. This fact and climate change, prolonging the period favouring vector development, require an analysis of the malaria transmission resurgence risk in areas of southern Europe. Such a study is made for the first time in Spain. The Ebro Delta historically endemic area was selected due to its rice field landscape, the presence of only one vector, Anopheles atroparvus, with densities similar to those it presented when malaria was present, in a situation which pronouncedly differs from already assessed potential resurgence areas in other Mediterranean countries, such as France and Italy, where many different Anopheles species coexist and a different vector species dominates. The transmission risk was assessed analysing: 1) climate diagrams including the minimum temperature for Plasmodium falciparum and Plasmodium vivax development; 2) monthly evolution of the Gradient Model Risk (GMR) index, specifying transmission risk period and number of potential Plasmodium generations; 3) ecological characteristics using remote sensing images with the Eurasia Land Cover characteristics database and the monthly evolution of the Normalized Difference Vegetation Index (NDVI); 4) evaluation of A. atroparvus population dynamics. Climatological analyses and GMR index show that a transmission risk presently exists, lasting from May until September for P. falciparum, and from May until October for P. vivax. The GMR index shows that the temperature increase does not actually mean a transmission risk increase if accompanied by a precipitation decrease reducing the number of parasite generations and transmission period. Nevertheless, this limitation is offset by the artificial flooding of the rice fields. Maximum NDVI values and A. atroparvus maximum abundance correspond to months with maximum growth of the rice fields. The Ebro Delta presents the ecological characteristics that favour transmission. The temperature increase has favoured a widening of the monthly potential transmission window with respect to when malaria was endemic. The combined application of modified climate diagrams and GMR index, together with spatial characterization conforms a useful tool for assessing potential areas at risk of malaria resurgence. NDVI is a good marker when dealing with a rice field area.

Malaria resurgence risk in southern Europe: climate assessment in an historically endemic area of rice fields at the Mediterranean shore of Spain

PubMed Central

2010-01-01

Background International travel and immigration have been related with an increase of imported malaria cases. This fact and climate change, prolonging the period favouring vector development, require an analysis of the malaria transmission resurgence risk in areas of southern Europe. Such a study is made for the first time in Spain. The Ebro Delta historically endemic area was selected due to its rice field landscape, the presence of only one vector, Anopheles atroparvus, with densities similar to those it presented when malaria was present, in a situation which pronouncedly differs from already assessed potential resurgence areas in other Mediterranean countries, such as France and Italy, where many different Anopheles species coexist and a different vector species dominates. Methods The transmission risk was assessed analysing: 1) climate diagrams including the minimum temperature for Plasmodium falciparum and Plasmodium vivax development; 2) monthly evolution of the Gradient Model Risk (GMR) index, specifying transmission risk period and number of potential Plasmodium generations; 3) ecological characteristics using remote sensing images with the Eurasia Land Cover characteristics database and the monthly evolution of the Normalized Difference Vegetation Index (NDVI); 4) evaluation of A. atroparvus population dynamics. Results Climatological analyses and GMR index show that a transmission risk presently exists, lasting from May until September for P. falciparum, and from May until October for P. vivax. The GMR index shows that the temperature increase does not actually mean a transmission risk increase if accompanied by a precipitation decrease reducing the number of parasite generations and transmission period. Nevertheless, this limitation is offset by the artificial flooding of the rice fields. Maximum NDVI values and A. atroparvus maximum abundance correspond to months with maximum growth of the rice fields. Conclusions The Ebro Delta presents the ecological characteristics that favour transmission. The temperature increase has favoured a widening of the monthly potential transmission window with respect to when malaria was endemic. The combined application of modified climate diagrams and GMR index, together with spatial characterization conforms a useful tool for assessing potential areas at risk of malaria resurgence. NDVI is a good marker when dealing with a rice field area. PMID:20673367

DOE Office of Scientific and Technical Information (OSTI.GOV)

Maulvault, Ana Luísa, E-mail: aluisa@ipma.pt; Interdisciplinary Centre of Marine and Environmental Research; MARE – Marine and Environmental Sciences Centre, Faculty of Sciences, University of Lisbon

The presence of cadmium (Cd), lead (Pb), mercury (THg), methylmercury (MeHg), arsenic (TAs), inorganic arsenic (iAs), cobalt (Co), copper (Cu), zinc (Zn), nickel (Ni), chromium (Cr) and iron (Fe) was investigated in seafood collected from European marine ecosystems subjected to strong anthropogenic pressure, i.e. hotspot areas. Different species (Mytilus galloprovincialis, n=50; Chamelea gallina, n=50; Liza aurata, n=25; Platichthys flesus, n=25; Laminaria digitata, n=15; and Saccharina latissima, n=15) sampled in Tagus estuary, Po delta, Ebro delta, western Scheldt, and in the vicinities of a fish farm area (Solund, Norway), between September and December 2013, were selected to assess metal contamination and potentialmore » risks to seafood consumers, as well as to determine the suitability of ecologically distinct organisms as bioindicators in environmental monitoring studies. Species exhibited different elemental profiles, likely as a result of their ecological strategies, metabolism and levels in the environment (i.e. seawater and sediments). Higher levels of Cd (0.15–0.94 mg kg{sup −1}), Pb (0.37−0.89 mg kg{sup −1}), Co (0.48–1.1 mg kg{sup −1}), Cu (4.8–8.4 mg kg{sup −1}), Zn (75–153 mg kg{sup −1}), Cr (1.0–4.5 mg kg{sup −1}) and Fe (283–930 mg kg{sup −1}) were detected in bivalve species, particularly in M. galloprovincialis from Ebro and Po deltas, whereas the highest content of Hg was found in P. flesus (0.86 mg kg{sup −1}). In fish species, most Hg was organic (MeHg; from 69 to 79%), whereas lower proportions of MeHg were encountered in bivalve species (between 20 and 43%). The highest levels of As were found in macroalgae species L. digitata and S. latissima (41 mg kg{sup −1} and 43 mg kg{sup −1}, respectively), with iAs accounting almost 50% of the total As content in L. digitata but not with S. latissima nor in the remaining seafood samples. This work highlights that the selection of the most appropriate bioindicator species is a fundamental step in environmental monitoring of each contaminant, especially in coastal areas. Furthermore, data clearly shows that the current risk assessment and legislation solely based on total As or Hg data is limiting, as elemental speciation greatly varies according to seafood species, thus playing a key role in human exposure assessment via food.« less

Improved γ-linolenic acid production in Mucor circinelloides by homologous overexpressing of delta-12 and delta-6 desaturases.

PubMed

Zhang, Yao; Luan, Xiao; Zhang, Huaiyuan; Garre, Victoriano; Song, Yuanda; Ratledge, Colin

2017-06-21

γ-Linolenic acid (GLA) is important because of its nutritional value and medicinal applications. Although the biosynthetic pathways of some plant and microbial GLA have been deciphered, current understanding of the correlation between desaturases and GLA synthesis in oleaginous fungi is incomplete. In previous work, we found that a large amount of oleic acid (OA) had not been converted to linoleic acid (LA) or GLA in Mucor circinelloides CBS 277.49, which may be due to inadequate activities of the delta-12 or delta-6 desaturases, and thus leading to the accumulation of OA and LA. Thus, it is necessary to explore the main contributing factor during the process of GLA biosynthesis in M. circinelloides. To enhance GLA production in M. circinelloides, homologous overexpression of delta-12 and two delta-6 desaturases (named delta-6-1 and delta-6-2, respectively) were analyzed. When delta-6 desaturase were overexpressed in M. circinelloides, up to 43% GLA was produced in the total fatty acids, and the yield of GLA reached 180 mg/l, which were, respectively, 38 and 33% higher than the control strain. These findings revealed that delta-6 desaturase (especially for delta-6-1 desaturase) plays an important role in GLA synthesis by M. circinelloides. The strain overexpressing delta-6-1 desaturase may have potential application in microbial GLA production.

The Ebro margin study, northwestern Mediterranean Sea - an introduction

USGS Publications Warehouse

Maldonado, A.; Hans, Nelson C.

1990-01-01

The Ebro continental margin from the coast to the deep sea off northeastern Spain was selected for a multidisciplinary project because of the abundant Ebro River sediment supply, Pliocene and Quaternary progradation, and margin development in a restricted basin where a variety of controlling factors could be evaluated. The nature of this young passive margin for the last 5 m.y. was investigated with particular emphasis on marine circulation, sediment dynamics, sediment geochemistry, depositional facies, seismic stratigraphy, geotechnical properties, geological hazards and human influences. These studies show the importance of marine circulation, variation in sediment supply, sea-level oscillation and tectonic setting for the understanding of modern and ancient margin depositional processes and growth patterns. ?? 1990.

Soil Mesocosm CO2 Emissions after 13C-glucose Addition, Soil Physical and Chemical Characteristics, and Microbial Biomass, Barrow, Alaska, 2014-2016

DOE Office of Scientific and Technical Information (OSTI.GOV)

Lydia Vaughn; Biao Zhu; Carolin Bimueller

Measurements made from a 2014-2016 field glucose addition experiment. Dataset includes measurements of surface trace gas emissions (Delta13C of ecosystem respiration and source-partitioned surface CO2 flux, CH4 flux, and GPP), soil profile information (concentrations of carbon, nitrogen, and soil microbial biomass carbon, Delta13C of soil organic matter and microbial biomass, gravimetric water content, and bulk density), soil mineral nitrogen availability, and field-measured soil temperature, air temperature and soil moisture. Experiment was conducted in a region of high-centered polygons on the BEO. Data will be available Fall 2017.

The biogeochemistry of microbial mats, stromatolites and the ancient biosphere

NASA Technical Reports Server (NTRS)

Desmarais, D. J.; Canfield, D. E.

1991-01-01

Stromatolites offer an unparalleled geologic record of early life, because they constitute the oldest and most abundant recognizable remains of microbial ecosystems. Microbial mats are living homologs of stromatolites; thus, the physiology of the microbiota as well as the processes which create those features of mats (e.g., biomarker organic compounds, elemental and stable isotopic compositions) which are preserved in the ancient record. Observations of the carbon isotopic composition (delta C-13) of stromatolites and microbial mats were made and are consistent with the hypothesis that atmospheric CO2 concentrations have declined by at least one to two orders of magnitude during the past 2.5 Ga. Whereas delta C-13 values of carbonate carbon average about 0 permil during both the early and mid-Proterozoic, the delta C-13 values of stromatolitic organic matter increase from an average of -35 between 2.0 and 2.6 Ga ago to an average of about -28 about 1.0 Ga ago. Modern microbial mats in hypersaline environments have delta C-13 values typically in the range of -5 to -9, relative to an inorganic bicarbonate source at 0 permil. Both microbial mats and pur cultures of cyanobacteria grown in waters in near equilibrium with current atmospheric CO2 levels exhibit minimal discrimination against C-13. In contrast, hot spring cyanobacterial mats or cyanobacterial cultures grown under higher CO2 levels exhibit substantially greater discrimination. If care is taken to compare modern mats with stromatolites from comparable environments, it might be possible to estimate ancient levels of atmospheric CO2. In modern microbial mats, a tight coupling exists between photosynthetic organic carbon production and subsequent carbon oxidation, mostly by sulfate reduction. The rate of one process fuels a high rate of the other, with much of the sulfate reduction occurring within the same depth interval as oxygenic photosynthesis. Other aspects of this study are presented.

Modes of development of slope canyons and their relation to channel and levee features on the Ebro sediment apron, off-shore northeastern Spain

USGS Publications Warehouse

O'Connell, S.; Ryan, William B. F.; Normark, W.R.

1987-01-01

Six submarine slope canyons in an area of the northwestern Mediterranean, offshore from the Ebro River and Delta, were surveyed with bathymetric swathmapping (SeaBeam) and mid-range side-looking sonar (SeaMARC I). All of the canyons have slightly winding paths with concave-upwards gradients that are relatively steep shallower than 1,200 m. Two major types of canyons are identified on the basis of their morphologic character at the base of the slope; Type-I canyons lead to an unchannelled base-of-slope deposit and Type-II canyons are continuous with channel-levee systems that cross the rise. Four Type-I canyons were surveyed in the area. Two of these are broad, U-shaped, steep (average gradients of 1:14), do not indent the shelf, and terminate downslope at debris-flow deposits. These two canyons, the most northern in the area, have rounded heads with extensive gullies separated by knife-edge ridges. Relief of the canyon walls is about equal on both sides of the canyons, although the right-hand walls (looking downslope) are generally steeper. The other two Type-I canyons in the area are similar in that they do not indent the shelf, but they are much smaller and shallower and coalesce before terminating in the base-of-slope region. The two Type-II canyons that feed leveed-channels are U-shaped with flatter floors, longer profiles and gentler gradients than Type-I canyons. They are closer to the Valencia Valley and have relatively small cross-sectional areas. We propose a four-stage evolutionary sequence to explain the development of the canyons observed in this section on the prograding Ebro margin. During the initial stage, slumping and erosion on the slope creates a network of small gullies. During the next stage, headward growth of one (or more) gully leads to a major indentation of the shelf. This is the critical factor for developing a channel that will incise the slope and provide a major conduit for moving sediment to the basin. Stage 3 is characterized by the development of a continuous channel accompanied by levee growth across the lobe. In the final stage, the channel-levee system becomes inactive either through destruction by mass wasting, infilling of the channel, or loss of the major sediment source. ?? 1987.

Recent reconstruction of deep-water macrofaunal communities recorded in Continental Margin sediments in the Balearic Basin

NASA Astrophysics Data System (ADS)

Cartes, J. E.; Schirone, A.; Barsanti, M.; Delbono, I.; Martínez-Aliaga, A.; Lombarte, A.

2017-07-01

We present an initial reconstruction of recent (last few centuries) mud-bottom faunal communities on the upper slope (398-667 m) of the continental margin off Catalonia (western Mediterranean), including periods free of any trawling impact. Radiometric dating of marine sediments and identification of faunal remains (e.g., fish otoliths, pteropod shells, coral sclerites) were performed to obtain a sediment geochronology in a 56 cm sediment core (MC4) taken at 398 m off the Ebro Delta in 2011. Core MC4 was especially rich in faunal remains, including, for example, 247 identifiable otoliths. A fine-scale chronology of MC4 was not possible due to sediment mixing. However, the depth of 210Pbxs penetration (20-22 cm) identified sediments older (below 22 cm depth) and younger (from core top to 22 cm) than ca. 100 years. Mass Accumulation Rate (MAR) from the 210Pbxs profile was estimated as 0.23±0.02 g cm-2 y-1. A significant peak of sclerites of the bamboo coral Isidella elongata was found between 4 and 8 cm in MC4, with remains of the axes and bases of Isidella colonies exclusively found at core depths >8-10 cm, which would correspond (MAR results) to the period 1980-1985. Such structures were not found in the 0-8 cm layer, likely an effect of trawling that started in the area in the 1980s. Other changes both in benthos (corals and cirripedes) and zooplankton (pteropods) seemed to be related with Ebro river discharge, with changes coinciding with massive damming of the Ebro and tributary rivers in the 1950s and until 1965. Mesopelagic fish also showed temporal oscillations in MC4. Abundance of some myctophid remains (Lampanyctus croccodilus and Benthosema glaciale) was related with positive NAO periods and with rather high temperature in Levantine Intermediate Waters. By contrast, periods of higher dominance of Ceratoscopelus maderensis off Catalonian coasts could indicate lower salinity during the past and a progressive degree of eutrophication in intermediate waters in recent decades. A general decline in myctophids otolith abundance during the last ca. 100 years could be related to changes in the temperature and salinity of deep-water masses and a decline in ocean productivity that would also have affected open-water fish stocks.

Hypersaline Microbial Mat Lipid Biomarkers

NASA Technical Reports Server (NTRS)

Jahnke, Linda L.; Embaye, Tsegereda; Turk, Kendra A.; Summons, Roger E.

2002-01-01

Lipid biomarkers and compound specific isotopic abundances are powerful tools for studies of contemporary microbial ecosystems. Knowledge of the relationship of biomarkers to microbial physiology and community structure creates important links for understanding the nature of early organisms and paleoenvironments. Our recent work has focused on the hypersaline microbial mats in evaporation ponds at Guerrero Negro, Baja California Sur, Mexico. Specific biomarkers for diatoms, cyanobacteria, archaea, green nonsulfur (GNS), sulfate reducing, sulfur oxidizing and methanotrophic bacteria have been identified. Analyses of the ester-bound fatty acids indicate a highly diverse microbial community, dominated by photosynthetic organisms at the surface. The delta C-13 of cyanobacterial biomarkers such as the monomethylalkanes and hopanoids are consistent with the delta C-13 measured for bulk mat (-10%o), while a GNS biomarker, wax esters (WXE), suggests a more depleted delta C-13 for GNS biomass (-16%o). This isotopic relationship is different than that observed in mats at Octopus Spring, Yellowstone National Park (YSNP) where GNS appear to grow photoheterotrophic ally. WXE abundance, while relatively low, is most pronounced in an anaerobic zone just below the cyanobacterial layer. The WXE isotope composition at GN suggests that these bacteria utilize photoautotrophy incorporating dissolved inorganic carbon (DIC) via the 3-hydroxypropionate pathway using H2S or H2.

Bottom-boundary-layer measurements on the continental shelf off the Ebro River, Spain

USGS Publications Warehouse

Cacchione, D.A.; Drake, D.E.; Losada, M.A.; Medina, R.

1990-01-01

Measurements of currents, waves and light transmission obtained with an instrumented bottom tripod (GEOPROBE) were used in conjunction with a theoretical bottom-boundary-layer model for waves and currents to investigate sediment transport on the continental shelf south of the Ebro River Delta, Spain. The current data show that over a 48-day period during the fall of 1984, the average transport at 1 m above the seabed was alongshelf and slightly offshore toward the south-southwest at about 2 cm/s. A weak storm passed through the region during this period and caused elevated wave and current speeds near the bed. The bottom-boundary-layer model predicted correspondingly higher combined wave and current bottom shear velocities at this time, but the GEOPROBE optical data indicate that little to no resuspension occurred. This result suggests that the fine-grained bottom sediment, which has a clay component of 80%, behaves cohesively and is more difficult to resuspend than noncohesive materials of similar size. Model computations also indicate that noncohesive very fine sand in shallow water (20 m deep) was resuspended and transported mainly as bedload during this storm. Fine-grained materials in shallow water that are resuspended and transported as suspended load into deeper water probably account for the slight increase in sediment concentration at the GEOPROBE sensors during the waning stages of the storm. The bottom-boundary-layer data suggest that the belt of fine-grained bottom sediment that extends along the shelf toward the southwest is deposited during prolonged periods of low energy and southwestward bottom flow. This pattern is augmented by enhanced resuspension and transport toward the southwest during storms. ?? 1990.

Alteration of soil microbial communities and water quality in restored wetlands

USGS Publications Warehouse

Bossio, D.A.; Fleck, J.A.; Scow, K.M.; Fujii, R.

2006-01-01

Land usage is a strong determinant of soil microbial community composition and activity, which in turn determine organic matter decomposition rates and decomposition products in soils. Microbial communities in permanently flooded wetlands, such as those created by wetland restoration on Sacramento-San Joaquin Delta islands in California, function under restricted aeration conditions that result in increasing anaerobiosis with depth. It was hypothesized that the change from agricultural management to permanently flooded wetland would alter microbial community composition, increase the amount and reactivity of dissolved organic carbon (DOC) compounds in Delta waters; and have a predominant impact on microbial communities as compared with the effects of other environmental factors including soil type and agricultural management. Based on phospholipid fatty acid (PLFA) analysis, active microbial communities of the restored wetlands were changed significantly from those of the agricultural fields, and wetland microbial communities varied widely with soil depth. The relative abundance of monounsaturated fatty acids decreased with increasing soil depth in both wetland and agricultural profiles, whereas branched fatty acids were relatively more abundant at all soil depths in wetlands as compared to agricultural fields. Decomposition conditions were linked to DOC quantity and quality using fatty acid functional groups to conclude that restricted aeration conditions found in the wetlands were strongly related to production of reactive carbon compounds. But current vegetation may have had an equally important role in determining DOC quality in restored wetlands. In a larger scale analysis, that included data from wetland and agricultural sites on Delta islands and data from two previous studies from the Sacramento Valley, an aeration gradient was defined as the predominant determinant of active microbial communities across soil types and land usage. ?? 2005 Elsevier Ltd. All rights reserved.

76 FR 41795 - Granting of Request for Early Termination of the Waiting Period Under the Premerger Notification...

Federal Register 2010, 2011, 2012, 2013, 2014

2011-07-15

...; Robert M. Chipman. 20110936 G 2003 TIL Settlement; LPF Atlanta LLC; 2003 TIL Settlement. 20110937 G.../2011 20110867 G Ebro Food S.A.; SOS Corporacion Alementaria, S.A.; Ebro Food S.A. 20110918 G 2003 TIL Settlement; Thoma Cressey Fund VIII, L.P.; 2003 TIL Settlement. 20110942 G Wells Fargo & Company; Castle...

Monitoring bacterial indicators of water quality in a tidally influenced delta: A Sisyphean pursuit.

PubMed

Partyka, Melissa L; Bond, Ronald F; Chase, Jennifer A; Atwill, Edward R

2017-02-01

The Sacramento-San Joaquin Delta Estuary (Delta) is the confluence of two major watersheds draining the Western Sierra Nevada mountains into the Central Valley of California, ultimately terminating into San Francisco Bay. We sampled 88 sites once a month for two years (2006-2008) over 87 separate sampling events for a total of 1740 samples. Water samples were analyzed for fecal indicator bacteria (Escherichia coli, enterococci and fecal coliforms), and 53 other physiochemical, land use, and environmental characteristics. The purpose of the study was to create a baseline of microbial water quality in the Delta and to identify various factors (climatic, land use, tidal, etc.) that were associated with elevated concentrations of indicator bacteria. Fecal indicator bacteria generally had weak to modest relationships to environmental conditions; the strength and direction of which varied for each microbial indicator, drainage region, and across seasons. Measured and unmeasured, site-specific effects accounted for large portions of variance in model predictions (ρ=0.086 to 0.255), indicating that spatial autocorrelation was a major component of water quality outcomes. The effects of tidal cycling and lack of connectivity between waterways and surrounding landscapes likely contributed to the lack of association between local land uses and microbial outcomes, though weak associations may also be indicative of mismatched spatiotemporal scales. The complex nature of this system necessitates continued monitoring and regular updates to statistical models designed to predict microbial water quality. Copyright © 2016 Elsevier B.V. All rights reserved.

Monitoring of perfluoroalkyl substances in the Ebro and Guadalquivir River basins (Spain)

NASA Astrophysics Data System (ADS)

Lorenzo, Maria; Campo, Julian; Andreu, Vicente; Pico, Yolanda; Farre, Marinella; Barcelo, Damia

2015-04-01

Relevant concentrations of a broad range of pollutants have been found in Spanish Mediterranean River basins, as consequence of anthropogenic pressures and overexploitation (Campo et al., 2014). In this study, the occurrence and sources of 21 perfluoroalkyl substances (PFASs) were determined in water and sediment of the Ebro and Guadalquivir River basins (Spain). PFASs are persistent, bio-accumulative and toxic, which make them a hazard to human health and wildlife. The Ebro and Guadalquivir Rivers are the two most important rivers of Spain. They are representative examples of Mediterranean rivers heavily managed, and previous researches have reported their high pesticide contamination (Masiá et al., 2013). Analytes were extracted by solid phase extraction (SPE) and determined by liquid chromatography coupled to tandem mass spectrometry (LC/MS-MS). In water samples, from 21 analytes screened, 11 were found in Ebro samples and 9 in Guadalquivir ones. In both basins, the most frequents were PFBA, PFPeA, PFHxS and PFOS. Maximum concentration was detected for PFBA, with 251.3 ng L-1 in Ebro and 742.9 ng L-1 in Guadalquivir. Regarding the sediment samples, 8 PFASs were detected in those coming from Ebro basin and 9 in those from Guadalquivir. The PFASs most frequently detected were PFBA, PFPeA, PFOS and PFBS. Maximum concentration in Ebro samples was detected for PFOA, with 32.4 ng g-1 dw, and in Guadalquivir samples for PFBA with 63.8 ng g-1 dw. Ubiquity of these compounds in the environment was proved with high PFAS concentration values detected in upper parts of the rivers. Results confirm that most of the PFASs are only partially eliminated during the secondary treatment suggesting that they can be a focal point of contamination to the rivers where they can bio-accumulate and produce adverse effects on wildlife and humans. Acknowledgment The Spanish Ministry of Economy and Competitiveness has supported this work through the projects SCARCE-CSD2009-00065, CGL2011-29703-C02-01 and CGL2011-29703-C02-02 References Campo, J., Pérez, F., Masiá, A., Picó, Y., Farré, M., Barceló, D., 2014. Perfluoroalkyl substance contamination of the Llobregat River ecosystem (Mediterranean area, NE Spain). Science of the Total Environment DOI: 10.1016/j.scitotenv.2014.05.094. Masiá, A., Campo J., Vázquez-Roig, P., Blasco, C., Picó Y., 2013. Screening of currently used pesticides in water, sediments and biota of the Guadalquivir River Basin (Spain). J. Hazard. Mater. 263P, 95-104.

Molecular Ecological and Stable Isotopic Studies of Nitrogen Fixation in Modern Microbial Mats

NASA Technical Reports Server (NTRS)

Bebout, B. M.; Crumbliss, L. L.; DesMarais, D. J.; Hogan, M. E.; Omoregie, E.; Turk, K. A.; Zehr, J. P.

2003-01-01

Nitrogen is usually the element limiting biological productivity in the marine environment. Microbial mats, laminated microbial communities analogous to some of the oldest forms of life on Earth, are often the sites of high rates of N fixation (the energetically expensive conversion of atmospheric dinitrogen into a biologically useful form). The N fixing enzyme nitrogenase is generally considered to be of ancient origin, and is widely distributed throughout the Bacterial and Archaeal domains of life, indicating an important role for this process over evolutionary time. The stable isotopic signature of N fixation is purportedly recognizable in organic matter (ancient kerogens as well as present-day microbial mats) as a delta (15)N(sub organic) near zero. We studied two microbial mats exhibiting different rates of N fixation in order to better understand the impact of N fixation on the delta (15)N (sub organic) of the mats, as well as what organisms are important in this process. Mats dominated by the cyanobacterium Microcoleus chthonoplastes grow in permanently submerged hypersaline salterns, and exhibit low rates of N fixation, whereas mats dominated by the cyanobacterium Lyngbya spp grow in an intertidal area, and exhibit rates of N fixation an order of magnitude higher. To examine successional stages in mat growth, both developing and established mats at each location were sampled. PCR and RT-PCR based approaches were used to identify, respectively, the organisms containing nifH (one of the genes that encode nitrogenase) as well as those expressing nifH in these mats. Both mats exhibited a distinct diel cycle of N fixation, with highest rates occurring at night. The delta (15)N(sub organic) of the subtidal Microcoleus mats is near zero whereas the delta (15)N(sub organic) is slightly more positive (+ 2-3%), in the intertidal Lyngbya mats, an interesting difference in view of the fact that overall rates of activity in the intertidal mats are much higher that those in the submerged hypersaline mats. Developing mats in both the subtidal and intertidal locations had delta (15)N(sub organic) values very near those of the established mats. Further work is necessary in order to determine the importance of other transformations of nitrogen on the delta (15)N(sub organic) signature of the mats.

Sources, bioavailability, and photoreactivity of dissolved organic carbon in the Sacramento-San Joaquin River Delta

USGS Publications Warehouse

Stepanauskas, R.; Moran, M.A.; Bergamaschi, B.A.; Hollibaugh, J.T.

2005-01-01

We analyzed bioavailability, photoreactivity, fluorescence, and isotopic composition of dissolved organic carbon (DOC) collected at 13 stations in the Sacramento-San Joaquin River Delta during various seasons to estimate the persistence of DOC from diverse shallow water habitat sources. Prospective large-scale wetland restorations in the Delta may change the amount of DOC available to the food web as well as change the quality of Delta water exported for municipal use. Our study indicates that DOC contributed by Delta sources is relatively refractory and likely mostly the dissolved remnants of vascular plant material from degrading soils and tidal marshes rather than phytoplankton production. Therefore, the prospective conversion of agricultural land into submerged, phytoplankton-dominated habitats may reduce the undesired export of DOC from the Delta to municipal users. A median of 10% of Delta DOC was rapidly utilizable by bacterioplankton. A moderate dose of simulated solar radiation (286 W m-2 for 4 h) decreased the DOC bioavailability by an average of 40%, with a larger relative decrease in samples with higher initial DOC bioavailability. Potentially, a DOC-based microbial food web could support ???0.6 ?? 109 g C of protist production in the Delta annually, compared to ???17 ?? 109 g C phytoplankton primary production. Thus, DOC utilization via the microbial food web is unlikely to play an important role in the nutrition of Delta zooplankton and fish, and the possible decrease in DOC concentration due to wetland restoration is unlikely to have a direct effect on Delta fish productivity. ?? Springer 2005.

The silence of the layers: Archaeological site visibility in the Pleistocene-Holocene transition at the Ebro Basin

NASA Astrophysics Data System (ADS)

Alday, Alfonso; Domingo, Rafael; Sebastián, María; Soto, Adriana; Aranbarri, Josu; González-Sampériz, Penélope; Sampietro-Vattuone, María Marta; Utrilla, Pilar; Montes, Lourdes; Peña-Monné, José Luis

2018-03-01

The Ebro Basin constitutes one of the most representative territories in SW Europe for the study of prehistoric societies during the Pleistocene-Holocene transition. The correlation of palaeoenvironmental and geomorphological proxies obtained from sedimentary records with chronologically well-constrained reference archaeological sites has allowed defining this time frame precisely, such that three main pilot areas haven been broadly depicted: the Alavese region, the Pre-Pyrenees and the Bajo Aragón. Overall, the human imprint in the Ebro Basin was rare during the Upper Palaeolithic, but more visible from the Upper Magdalenian (14500-13500 cal BP) to Neolithic times (up to 5500 cal BP). Local environmental resources were continuously managed by the prehistoric communities in the different areas of study. In fact, the Ebro Basin acted during those millennia as a whole, developing the same cultural trends, industrial techniques and settlement patterns in parallel throughout the territory. However, some gaps exist in the 14C frequency curve (SCDPD curve). This is partially related to prehistoric sites in particular lithologies and geological structures that could have partly been lost by erosional processes, especially during the Early Holocene. In addition, this gap also parallels the reconstructed climate trend for the Pre-Pyrenean and the Bajo Aragón areas, which are defined by high frequencies of xerophilous flora until ca. 9500 cal BP, suggesting that continental climate features could have hampered the presence of well-established human communities in inland regions. The interdisciplinary research (archaeology, geomorphology and palaeoclimatology) discussed in this paper offers clues to understand the existence of fills and gaps in the archaeological record of the Ebro Basin, and can be applied in other territories with similar geographic and climate patterns.

Application of calorimetry to microbial biodegradation studies of agrochemicals in oxisols.

PubMed

Critter, S A; Airoldi, C

2001-01-01

Calorimetry was used to monitor the inhibitory effect caused by the bipyridynium diquaternary salts paraquat, diquat, and phosphamidon on microbial activity in a Red Latosol soil (Oxisol). The thermal effect was recorded on samples composed of 1.50 g of soil, 6.0 mg of glucose, 6.0 mg of ammonium sulfate, and different masses of an inhibitor ranging from zero to 8.00 mg, under a controlled moisture content of 35%. Thermal effects of each pollutant on the degradation curves of glucose in the soil were compared. Increasing amounts of the inhibitor caused a decrease in the thermal effect from -2234 to -1987 kJ mol(-1) for paraquat, -1670 to -1306 kJ mol(-1) for diquat, and -2239 to -589 kJ mol(-1) for phosphamidon. The last xenobiotic agent caused a significant inhibitory effect on the microbial activity of the soil. The results of relative efficiency, eta = deltaH/deltaH', referring to the enthalpic value with (deltaH) and without (deltaH') agrochemical in the soil, exhibited a significant correlation. From this correlation obtained for the ranges 2.00 to 8.00, 1.30 to 8.00, and 1.20 to 5.80 mg of the agrochemicals paraquat, diquat, and phosphamidon, respectively, the following eta values were calculated: 0.993 to 0.894, 0.668 to 0.522, and 0.896 to 0.236, respectively, during the degradation of glucose in the soil. The largest relative efficiency for paraquat implies that this agrochemical can be metabolized by microbial activity.

Ratios of carbon isotopes in microbial lipids as an indicator of substrate usage.

PubMed

Abraham, W R; Hesse, C; Pelz, O

1998-11-01

The occurrence and abundance of microbial fatty acids have been used for the identification of microorganisms in microbial communities. However, these fatty acids can also be used as indicators of substrate usage. For this, a systematic investigation of the discrimination of the stable carbon isotopes by different microorganisms is necessary. We grew 11 strains representing major bacterial and fungal species with four different isotopically defined carbon sources and determined the isotope ratios of fatty acids of different lipid fractions. A comparison of the differences of delta13C values of palmitic acid (C16:0) with the delta13C values of the substrates revealed that the isotope ratio is independent of the growth stage and that most microorganisms showed enrichment of C16:0 with 13C when growing on glycerol. With the exception of Burkholderia gladioli, all microorganism showed depletion of 13C in C16:0 while incorporating the carbons of glucose, and most of them were enriched with 13C from mannose, with the exception of Pseudomonas fluorescens and the Zygomycotina. Usually, the glycolipid fractions are depleted in 13C compared to the phospholipid fractions. The delta13C pattern was not uniform within the different fatty acids of a given microbial species. Generally, tetradecanoic acid (C14:0) was depleted of 13C compared to palmitic acid (C16:0) while octadecanoic acid (C18:0) was enriched. These results are important for the calibration of a new method in which delta13C values of fatty acids from the environment delineate the use of bacterial substrates in an ecosystem.

Benthic macrofaunal dynamics and environmental stress across a salt wedge Mediterranean estuary.

PubMed

Nebra, Alfonso; Alcaraz, Carles; Caiola, Nuno; Muñoz-Camarillo, Gloria; Ibáñez, Carles

2016-06-01

The spatial distribution of benthic macroinvertebrate community in relation to environmental factors was studied along the Ebro Estuary (NE Iberian Peninsula), a salt wedge Mediterranean estuary. Both ordination methods and generalized additive models were performed to identify the different benthic assemblages and their relationship to abiotic factors. Our results showed a strong relationship between macrofaunal assemblages and the predominant environmental gradients (e.g. salinity); thus revealing spatial differences in their structure and composition. Two different stretches were identified, namely the upper (UE) and the lower Ebro Estuary (LE). UE showed riverine characteristics and hence was colonized by a freshwater community; whereas LE was influenced by marine intrusion and sustained a complex marine-origin community. However, within each stretch, water and sediment characteristics played an important role in explaining species composition differences among sampling stations. Moreover, outcomes suggested a total species replacement pattern, instead of the nestedness pattern usually associated with well-mixed temperate estuaries. The sharp species turnover together with the estuarine stratification point out that the Ebro Estuary is working, in terms of ecological boundaries, under an ecotone model. Finally, despite obvious differences with well mixed estuaries (i.e. lack of tidal influence, stratification and species turnover), the Ebro Estuary shares important ecological attributes with well-mixed temperate estuaries. Copyright © 2016 Elsevier Ltd. All rights reserved.

A combined QC methodology in Ebro Delta HF radar system: real time web monitoring of diagnostic parameters and offline validation of current data

NASA Astrophysics Data System (ADS)

Lorente, Pablo; Piedracoba, Silvia; Soto-Navarro, Javier; Ruiz, Maria Isabel; Alvarez Fanjul, Enrique

2015-04-01

Over recent years, special attention has been focused on the development of protocols for near real-time quality control (QC) of HF radar derived current measurements. However, no agreement has been worldwide achieved to date to establish a standardized QC methodology, although a number of valuable international initiatives have been launched. In this context, Puertos del Estado (PdE) aims to implement a fully operational HF radar network with four different Codar SeaSonde HF radar systems by means of: - The development of a best-practices robust protocol for data processing and QC procedures to routinely monitor sites performance under a wide variety of ocean conditions. - The execution of validation works with in-situ observations to assess the accuracy of HF radar-derived current measurements. The main goal of the present work is to show this combined methodology for the specific case of Ebro HF radar (although easily expandable to the rest of PdE radar systems), deployed to manage Ebro River deltaic area and promote the conservation of an important aquatic ecosystem exposed to a severe erosion and reshape. To this aim, a web interface has been developed to efficiently monitor in real time the evolution of several diagnostic parameters provided by the manufacturer (CODAR) and used as indicators of HF radar system health. This web, updated automatically every hour, examines sites performance on different time basis in terms of: - Hardware parameters: power and temperature. - Radial parameters, among others: Signal-to-Noise Ratio (SNR), number of radial vectors provided by time step, maximum radial range and bearing. - Total uncertainty metrics provided by CODAR: zonal and meridional standard deviations and covariance between both components. - Additionally, a widget embedded in the web interface executes queries against PdE database, providing the chance to compare current time series observed by Tarragona buoy (located within Ebro HF radar spatial domain) and those measured by the closest radar grid point. A thorough analysis of the temporal evolution of the aforementioned parameters allows to define the standard thresholds for each site within which they are considered to be running optimally. In contrast, a site performance could be categorized as sub-optimal if an erratic and/or anomalous behavior is persistently detected in radial parameters values, related to a significant discrepancy from the mean and clearly outside the limits defined by the associated standard deviations. Consequently, a three colored-based alert system is activated according to each site's current status: green (OK), yellow (acceptable, but issue detected) and red (KO). Since this approach is constrained by the fact that it can not state the intrinsic quality of surface current data, a complementary validation analysis is required: HF radar-derived radial and total vectors are compared with observations from a current meter installed in Tarragona buoy. This validation, conducted for the entire 2014, aims to complete the proposed methodology through the exploration of the existence of bearing errors and the evaluation of intrinsic uncertainties related to HF radar technology by means of objective quality indicators.

Wetland monitoring with Global Navigation Satellite System reflectometry

PubMed Central

Zuffada, Cinzia; Shah, Rashmi; Chew, Clara; Lowe, Stephen T.; Mannucci, Anthony J.; Cardellach, Estel; Brakenridge, G. Robert; Geller, Gary; Rosenqvist, Ake

2017-01-01

Abstract Information about wetland dynamics remains a major missing gap in characterizing, understanding, and projecting changes in atmospheric methane and terrestrial water storage. A review of current satellite methods to delineate and monitor wetland change shows some recent advances, but much improved sensing technologies are still needed for wetland mapping, not only to provide more accurate global inventories but also to examine changes spanning multiple decades. Global Navigation Satellite Systems Reflectometry (GNSS‐R) signatures from aircraft over the Ebro River Delta in Spain and satellite measurements over the Mississippi River and adjacent watersheds demonstrate that inundated wetlands can be identified under different vegetation conditions including a dense rice canopy and a thick forest with tall trees, where optical sensors and monostatic radars provide limited capabilities. Advantages as well as constraints of GNSS‐R are presented, and the synergy with various satellite observations are considered to achieve a breakthrough capability for multidecadal wetland dynamics monitoring with frequent global coverage at multiple spatial and temporal scales. PMID:28331894

Drought and detritivores determine leaf litter decomposition in calcareous streams of the Ebro catchment (Spain).

PubMed

Monroy, Silvia; Menéndez, Margarita; Basaguren, Ana; Pérez, Javier; Elosegi, Arturo; Pozo, Jesús

2016-12-15

Drought, an important environmental factor affecting the functioning of stream ecosystems, is likely to become more prevalent in the Mediterranean region as a consequence of climate change and enhanced water demand. Drought can have profound impacts on leaf litter decomposition, a key ecosystem process in headwater streams, but there is still limited information on its effects at the regional scale. We measured leaf litter decomposition across a gradient of aridity in the Ebro River basin. We deployed coarse- and fine-mesh bags with alder and oak leaves in 11 Mediterranean calcareous streams spanning a range of over 400km, and determined changes in discharge, water quality, leaf-associated macroinvertebrates, leaf quality and decomposition rates. The study streams were subject to different degrees of drought, specific discharge (Ls -1 km -2 ) ranging from 0.62 to 9.99. One of the streams dried out during the experiment, another one reached residual flow, whereas the rest registered uninterrupted flow but with different degrees of flow variability. Decomposition rates differed among sites, being lowest in the 2 most water-stressed sites, but showed no general correlation with specific discharge. Microbial decomposition rates were not correlated with final nutrient content of litter nor to fungal biomass. Total decomposition rate of alder was positively correlated to the density and biomass of shredders; that of oak was not. Shredder density in alder bags showed a positive relationship with specific discharge during the decomposition experiment. Overall, the results point to a complex pattern of litter decomposition at the regional scale, as drought affects decomposition directly by emersion of bags and indirectly by affecting the functional composition and density of detritivores. Copyright © 2016 The Authors. Published by Elsevier B.V. All rights reserved.

Characterization of microbial consortia in a terephthalate-degrading anaerobic granular sludge system.

PubMed

Wu, J H; Liu, W T; Tseng, I C; Cheng, S S

2001-02-01

The microbial composition and spatial distribution in a terephthalate-degrading anaerobic granular sludge system were characterized using molecular techniques. 16S rDNA clone library and sequence analysis revealed that 78.5% of 106 bacterial clones belonged to the delta subclass of the class Proteobacteria; the remaining clones were assigned to the green non-sulfur bacteria (7.5%), Synergistes (0.9%) and unidentified divisions (13.1%). Most of the bacterial clones in the delta-Proteobacteria formed a novel group containing no known bacterial isolates. For the domain Archaea, 81.7% and 18.3% of 72 archaeal clones were affiliated with Methanosaeta and Methanospirillum, respectively. Spatial localization of microbial populations inside granules was determined by transmission electron microscopy and fluorescent in situ hybridization with oligonucleotide probes targeting the novel delta-proteobacterial group, the acetoclastic Methanosaeta, and the hydrogenotrophic Methanospirillum and members of Methanobacteriaceae. The novel group included at least two different populations with identical rod-shape morphology, which made up more than 87% of the total bacterial cells, and were closely associated with methanogenic populations to form a nonlayered granular structure. This novel group was presumed to be the primary bacterial population involved in the terephthalate degradation in the methanogenic granular consortium.

Monitoring Natural Biodegradation of TCE in Fractured Sedimentary Rocks Using delta 13C of TCE and its Degradation Products: Estimating Isotopic Fractionation Factor under Field Conditions

NASA Astrophysics Data System (ADS)

Revesz, K.; Shapiro, A. M.; Tiedeman, C.; Goode, D. J.; Lacombe, P. J.; Imbrigiotta, T. E.

2008-12-01

The isotopic ratio of 13C/12C, expressed in delta13CVPDB per mill for trichloroethene (TCE), can differentiate between microbial degradation and other processes (dilution, dispersion, and sorption) that can also affect the concentration of TCE and its degradation products. The delta13C of TCE isotopically fractionates during microbial degradation; however, it remains practically unchanged during other processes. The isotope fractionation factor (alpha) estimated under laboratory conditions, however, may not be representative of microbial degradation in natural ground waters. Estimating alpha under field conditions provides evidence of the presence or absence of in situ microbial degradation and provides valuable information on the in situ processes that affect the fate and transport of chlorinated hydrocarbons. Our modified analytical method of analyzing for the isotopic ratio proved to be comparable to previously published methods. Isotope values were stable within analytical uncertainty in sample sizes ranging from 22 to 2200 nanomoles. Prepared standard mixtures of TCE and DCEs (trans- and cis- dichloroethene) were analyzed after every five field samples, and were stable during the time period that field samples were processed (a year). Water samples were collected from multiple boreholes completed in the fractured mudstone underlying the former Naval Air Warfare Center, West Trenton, NJ, and analyzed for delta13C of the chlorinated hydrocarbons. The results showed an ongoing natural microbial degradation following the typical dehalogenation pathway: TCE to DCE (trans- and cis-dichloroethene) to VC (vinyl chloride). The carbon isotope enrichment due to fractionation was smaller between TCE to DCE degradation than the enrichment between DCE to VC degradation, which is consistent with previous investigations. Results also showed a correlation between delta13C of TCE and the transmissivity of the boreholes where water samples were collected. We assumed that boreholes with extremely low transmissivity behaved analogously to microbial batch reactors. The value of alpha obtained from the borehole interval with the lowest transmissivity was 0.99345, which is in the range of published values: 0.9862 to 0.9934. We consider this value to represent the "field alpha" for microbial degradation in the absence of other processes. Values of alpha in other boreholes that differ from the field alpha could point to other processes affecting the delta13C and concentration of TCE. The value of alpha from the various monitored intervals is referred to as the "apparent alpha". The apparent alpha is characteristic of the borehole and the time at which the concentrations and the isotope values were measured. The difference between the apparent alpha and the field alpha provides insight into hydrologic conditions around the well. Results from one well showed fluctuation in the TCE concentrations, which were correlated with the calculated apparent alpha, and pointed to the recent introduction of TCE into the ground water that had not been significantly degraded. Recent drilling in the vicinity of this well may have remobilized free-phase TCE.

FATTY ACID STABLE ISOTOPE INDICATORS OF MICROBIAL CARBON SOURCE IN TROPICAL SOILS

EPA Science Inventory

The soil microbial community plays an important role in tropical ecosystem functioning because of its importance in the soil organic matter (SOM) cycle. We have measured the stable carbon isotopic ratio (delta13C) of individual phospholipid fatty acids (PLFAs) in a variety of tr...

Drugs of abuse and their metabolites in the Ebro River basin: occurrence in sewage and surface water, sewage treatment plants removal efficiency, and collective drug usage estimation.

PubMed

Postigo, Cristina; López de Alda, María José; Barceló, Damià

2010-01-01

Drugs of abuse and their metabolites have been recently recognized as environmental emerging organic contaminants. Assessment of their concentration in different environmental compartments is essential to evaluate their potential ecotoxicological effects. It also constitutes an indirect tool to estimate drug abuse by the population at the community level. The present work reports for the first time the occurrence of drugs of abuse and metabolites residues along the Ebro River basin (NE Spain) and also evaluates the contribution of sewage treatment plants (STPs) effluents to the presence of these chemicals in natural surface waters. Concentrations measured in influent sewage waters were used to back calculate drug usage at the community level in the main urban areas of the investigated river basin. The most ubiquitous and abundant compounds in the studied aqueous matrices were cocaine, benzoylecgonine, ephedrine and ecstasy. Lysergic compounds, heroin, its metabolite 6-monoacetyl morphine, and Delta(9)-tetradhydrocannabinol were the substances less frequently detected. Overall, total levels of the studied illicit drugs and metabolites observed in surface water (in the low ng/L range) were one and two orders of magnitude lower than those determined in effluent (in the ng/L range) and influent sewage water (microg/L range), respectively. The investigated STPs showed overall removal efficiencies between 45 and 95%. Some compounds, such as cocaine and amphetamine, were very efficiently eliminated (>90%) whereas others, such as ecstasy, methamphetamine, nor-LSD, and THC-COOH where occasionally not eliminated at all. Drug consumption estimates pointed out cocaine as the most abused drug, followed by cannabis, amphetamine, heroin, ecstasy and methamphetamine, which slightly differs from national official estimates (cannabis, followed by cocaine, ecstasy, amphetamine and heroin). Extrapolation of the consumption data obtained for the studied area to Spain points out a total annual consumption of drugs of abuse of the order of 36 tonnes, which would translate into 1100million Euros in the black market.

Global change impacts on river ecosystems: A high-resolution watershed study of Ebro river metabolism.

PubMed

Val, Jonatan; Chinarro, David; Pino, María Rosa; Navarro, Enrique

2016-11-01

Global change is transforming freshwater ecosystems, mainly through changes in basin flow dynamics. This study assessed how the combination of climate change and human management of river flow impacts metabolism of the Ebro River (the largest river basin in Spain, 86,100km(2)), assessed as gross primary production-GPP-and ecosystem respiration-ER. In order to investigate the influence of global change on freshwater ecosystems, an analysis of trends and frequencies from 25 sampling sites of the Ebro river basin was conducted. For this purpose, we examined the effect of anthropogenic flow control on river metabolism with a Granger causality study; simultaneously, took into account the effects of climate change, a period of extraordinary drought (largest in past 140years). We identified periods of sudden flow changes resulting from both human management and global climate effects. From 1998 to 2012, the Ebro River basin was trending toward a more autotrophic condition indicated by P/R ratio. Particularly, the results show that floods that occurred after long periods of low flows had a dramatic impact on the respiration (i.e., mineralization) capacity of the river. This approach allowed for a detailed characterization of the relationships between river metabolism and drought impacts at the watershed level. These findings may allow for a better understanding of the ecological impacts provoked by flow management, thus contributing to maintain the health of freshwater communities and ecosystem services that rely on their integrity. Copyright © 2016 Elsevier B.V. All rights reserved.

Hydrology, microbiology and carbon cycling at a high Arctic polythermal glacier, (John Evans Glacier, Ellesmere Island, Canada)

NASA Astrophysics Data System (ADS)

Skidmore, Mark Leslie

Analysis of the hydrology, hydrochemistry and microbiology at polythermal John Evans Glacier and geochemical and isotopic data from Haut Glacier d'Arolla demonstrates that certain subglacial chemical weathering processes are microbially mediated. Subglacial drainage is likely an annual occurrence beneath John Evans Glacier and solute rich subglacial waters indicate over winter storage at the glacier bed. Subglacial microbial populations are also present, and are viable under simulated near in situ conditions at 0.3°C. This suggests that temperate subglacial environments at a polythermal glacier, which are isolated by cold ice above and around them, provide a viable habitat for life where basal water and organic carbon are present throughout the year. Thus, a subglacial microbial ecosystem based upon legacy carbon, (from old soils or surface inputs) rather than primary production may exist, where redox processes are a key component, and seasonal anoxia may occur. The existence of anoxic environments is supported by the presence of strictly anaerobic bacteria (sulphate reducing bacteria and methanogens) in the basal sediments---which are viable in culture at 4°C---and also argues that these bacteria are not washed in with oxygenated surface meltwaters, but are present in the subglacial environment. During the summer meltseason there is a large input of surficial waters to the subglacial system and water residence times are drastically reduced. Hence, kinetic weathering processes dominate, resulting in light delta 13C-DIC (dissolved inorganic carbon) in glacial runoff, as verified by experimental work on CaCO3 and John Evans Glacier sediments. The experiments demonstrate kinetic bedrock fractionation (KBF) during carbonate hydrolysis and that kinetic fractionation of CO2 (KFC) is proportional to the rate of CO2 draw down during the carbonation of carbonates. This results in significantly depleted delta13C-DIC values (≤-16 ‰) relative to the bedrock carbonate. Incorporating KBF and KFC processes into geochemical weathering models makes it possible to distinguish between kinetic effects and microbial CO2 as causes of light delta13C-DIC in glacial runoff. However, where kinetically produced DIC dominates, this can potentially mask small microbial respiration signatures. Only in the distributed system waters at Haut Glacier d'Arolla is light delta13C-DIC clearly due to microbial respiration.

Detection of major river bed changes in the River Ebro (north-eastern Spain)

NASA Technical Reports Server (NTRS)

Espejo, R.; Torrent, J.; Roquero, C.

1973-01-01

The application or ERTS-1 data to determine the major river bed changes of the Ebro River in northeastern Spain is discussed. Image quality was good enough to permit a clear identification of the river course and bands MSS 5 and 7 proved to be the most useful for this purpose. Reflectance for band 5 was high due to the high sediment content of the water and sufficed to identify the river. Features like bodies of water related to old channels and depressions were only apparent in band 7.

Characterization of Iberian turbid plumes by means of synoptic patterns obtained through MODIS imagery

NASA Astrophysics Data System (ADS)

Fernández-Nóvoa, D.; deCastro, M.; Des, M.; Costoya, X.; Mendes, R.; Gómez-Gesteira, M.

2017-08-01

Turbid plumes formed by the main Iberian rivers were analyzed and compared in order to determine similarities and differences among them. Five Atlantic rivers (Minho, Douro, Tagus, Guadiana and Guadalquivir) and one Mediterranean river (Ebro) were considered. Plume extension and turbidity were evaluated through synoptic patterns obtained by means of MODIS imagery over the period 2003-2014. River discharge showed to be the main forcing. In fact, the dependence of plume extension on runoff is moderate or high for all rivers, except for Ebro. In addition, most of river plumes adjust immediately to runoff fluctuations. Only the extension of Tagus and Guadalquivir plumes is lagged with respect to river runoff, due to the high residence time generated by their large estuaries. Wind is a secondary forcing, being only noticeable under high discharges. Actually, the dependence of plume extension on wind is moderate or high for all rivers, except Guadalquivir and Ebro. All the Atlantic rivers show the maximum (minimum) near- field plume extension under landward (oceanward) cross-shore winds. The opposite situation was observed for Ebro River. Tide is also a secondary forcing although less important than wind. Actually, the dependence of plume extension on tide is only high for Guadiana River. Nevertheless, all Atlantic river plumes still have some dependence on semidiurnal tidal cycle, they increase under low tides and decrease under high tides. In addition, Tagus River plume also depends on the fortnightly tidal cycle being larger during spring tides than during neap tides. This is due to particular shape of the estuary, where the river debouches into a semi-enclosed embayment connected to the Atlantic Ocean through a strait. Ebro River constitutes a particular case since it has a low dependence on runoff and wind and a negligible dependence on tide. In fact, its plume is mainly driven by the Liguro-Provençal coastal current. Guadalquivir River also shows some unique features due to its high sediment load. It generates the largest Iberian plume in terms of turbid signal and extension even being the second smallest river in terms of discharge.

Recent Trends in the Ebro River Basin: Is It All "Just" Climate Change?

NASA Astrophysics Data System (ADS)

Lutz, Stefanie; Merz, Ralf

2016-04-01

Water resources are under pressure from a variety of stressors such as industry, agriculture, water abstraction or pollution. Changing climate can potentially enhance the impact of these stressors, especially under water scarcity conditions. The aim of the GLOBAQUA project ("Managing the effects of multiple stressors on aquatic ecosystems under water scarcity") is, therefore, to analyze the combined effect of multiple stressors in the context of increasing water scarcity. As part of the GLOBAQUA project, this study examines recent trends in climate, water quantity and quality parameters in the Ebro River Basin in Northern Spain to identify stressors and determine their joint impact on water resources. Mann-Kendall trend analyses of temperature, precipitation, streamflow, groundwater level, streamwater and groundwater quality data (spanning between 15 and 40 years) were performed. Moreover, anthropogenic pressures such as land use and alteration of natural flow by reservoirs were considered. Climate data indicate increasing temperatures in the Ebro River Basin especially in summer and autumn, and decreasing precipitation particularly in summer. In contrast, precipitation mostly shows upwards trends in autumn, but these are counterbalanced by greater evapotranspiration due to higher temperatures. Overall, this results in annual and seasonal streamflow decreases at the majority of gauging stations. Declining trends in streamflow are most pronounced during summer and are also observed in subbasins without reservoirs. Diminishing water resources become also apparent in generally decreasing groundwater levels in the Ebro River Basin. This decrease is most pronounced in areas where groundwater serves as main origin for irrigation water, which demonstrates how land use acts as a local rather than regional driver of change. Increasing air temperatures correlate with increasing water temperatures over the past 30 years, which indicates the effect of changing climate on water quality. However, the correlation between air and water temperatures decreases in the presence of reservoirs upstream of the sampling points. Reservoirs can thus alter the thermal regime of rivers, which might, in turn, pose a threat to aquatic ecosystems. Apart from the water demand for irrigation, agriculture is a main cause of nitrate pollution of both surface water and groundwater in the Ebro River Basin. Nitrate concentrations in streamwater have mostly decreased for the last 15 years, which is consistent with less fertilizer consumption in Spain since the early 2000s. However, nitrate concentrations remain high in many groundwater wells. Overall, the analysis of multiple pressures on water resources suggests that recent changes in the Ebro River Basin are driven by a variety of anthropogenic influences including changing climate. This emphasizes the importance of adapted land use and water resources management to secure sufficient quantity and quality of water resources in this large river basin.

Applicability of a microbial Time Temperature Indicator (TTI) for monitoring spoilage of modified atmosphere packed minced meat.

PubMed

Vaikousi, Hariklia; Biliaderis, Costas G; Koutsoumanis, Konstantinos P

2009-08-15

The applicability of a microbial Time Temperature Indicator (TTI) prototype, based on the growth and metabolic activity of a Lactobacillus sakei strain developed in a previous study, in monitoring quality of modified atmosphere packed (MAP) minced beef was evaluated at conditions simulating the chill chain. At all storage temperatures examined (0, 5, 10, 15 degrees C), the results showed that lactic acid bacteria (LAB) were the dominant bacteria and can be used as a good spoilage index of MAP minced beef. The end of product's shelf life as revealed by the sensory evaluation coincided with a LAB population level of 7 log(10) CFU/g. For all temperatures tested, the growth of L. sakei in the TTI resembled closely the growth of LAB in the meat product, with similar temperature dependence of the micro(max) and thus similar activation energy values calculated as 111.90 and 106.90 kJ/mol, for the two systems, respectively. In addition, the end point of TTI colour change coincided with the time of sensory rejection point of the beef product during its storage under isothermal chilled temperature conditions. The estimated activation energy, E(alpha), values obtained for parameters related to the response of DeltaE (total colour change of the TTI) describing the kinetics of colour change of the TTI during isothermal storage (i.e. the maximum specific rate of DeltaEpsilon evolution curve, micro(DeltaEpsilon), and also the reciprocal of t(i), time at which half of the maximum DeltaEpsilon is reached), were 112.77 and 127.28 kJ/mol, respectively. Finally, the application of the microbial TTI in monitoring the quality deterioration of MAP minced beef due to spoilage was further evaluated under dynamic conditions of storage, using two separate low temperature periodic changing scenarios, resembling the actual conditions occurring in the distribution chill chain. The results showed that the end point of TTI, after storage at those fluctuating temperature conditions, was noted very close to the end of product's sensorial shelf life. This finding points to the applicability of the developed microbial TTI as a valuable tool for monitoring the quality status during distribution and storage of chilled meat products, which are spoiled by lactic acid bacteria or other bacteria exhibiting similar kinetic responses and spoilage potential.

Tracing C Fluxes From Leaf Litter To Microbial Respired CO2 And Specific Soil Compounds

NASA Astrophysics Data System (ADS)

Rubino, M.; Lubritto, C.; D'Onofrio, A.; Gleixner, G.; Terrasi, F.; Cotrufo, F. M.

2004-12-01

Despite litter decomposition is one of the major process controlling soil C stores and nutrient cycling, yet C dynamics during litter decay are poorly understood and quantified. Here we report the results of a laboratory experiment where 13C depleted leaf litter was incubated on a 13C enriched soil with the aims to: i) partition the C loss during litter decay into microbial respired-CO2 and C input into the soil; ii) identify the soil compounds where litter derived C is retained; iii) assess whether litter quality is a determinant of both the above processes. Three 13C-depleted leaf litter(delta13C ca. -43), differing in their degradability, were incubated on C4 soil (delta13C ca. -18) under laboratory controlled conditions for 8 months, with litter respiration and delta13C-CO2 being measured at regular intervals. At harvest, Compound Specific Isotope Analyses was performed on soil and litter samples in order to follow the fate of litter-derived C compounds in the various pools of SOMƒn The delta13C of soils carbohydrates, alkanes and Phospho Lipids Fatty Acids (PLFA) were measured, and the mixing model approach used to quantify the contribution of litter derived C to the specific compounds.

Isotopic composition of methane and inferred methanogenic substrates along a salinity gradient in a hypersaline microbial mat system.

PubMed

Potter, Elyn G; Bebout, Brad M; Kelley, Cheryl A

2009-05-01

The importance of hypersaline environments over geological time, the discovery of similar habitats on Mars, and the importance of methane as a biosignature gas combine to compel an understanding of the factors important in controlling methane released from hypersaline microbial mat environments. To further this understanding, changes in stable carbon isotopes of methane and possible methanogenic substrates in microbial mat communities were investigated as a function of salinity here on Earth. Microbial mats were sampled from four different field sites located within salterns in Baja California Sur, Mexico. Salinities ranged from 50 to 106 parts per thousand (ppt). Pore water and microbial mat samples were analyzed for the carbon isotopic composition of dissolved methane, dissolved inorganic carbon (DIC), and mat material (particulate organic carbon or POC). The POC delta(13)C values ranged from -6.7 to -13.5 per thousand, and DIC delta(13)C values ranged from -1.4 to -9.6 per thousand. These values were similar to previously reported values. The delta(13)C values of methane ranged from -49.6 to -74.1 per thousand; the methane most enriched in (13)C was obtained from the highest salinity area. The apparent fractionation factors between methane and DIC, and between methane and POC, within the mats were also determined and were found to change with salinity. The apparent fractionation factors ranged from 1.042 to 1.077 when calculated using DIC and from 1.038 to 1.068 when calculated using POC. The highest-salinity area showed the least fractionation, the moderate-salinity area showed the highest fractionation, and the lower-salinity sites showed fractionations that were intermediate. These differences in fractionation are most likely due to changes in the dominant methanogenic pathways and substrates used at the different sites because of salinity differences.

Hydrocarbon gases associated with permafrost in the Mackenzie Delta, Northwest Territories, Canada

USGS Publications Warehouse

Collett, T.S.; Dallimore, S.R.

1999-01-01

Molecular and isotopic analyses of core gas samples from 3 permafrost research core holes (92GSCTAGLU, 92GSCKUMAK, 92GSCUNIPKAT; sample core depths ranging from 0.36 to 413.82 m) in the Mackenzie Delta of the Northwest Territories of Canada reveal the presence of hydrocarbon gases from both microbial and thermogenic sources. Analyses of most headspace and blended gas samples from the ice-bonded permafrost portion of the core holes yielded C1/(C2 + C3) hydrocarbon gas ratios and CH4-C isotopic compositions (??13C CH4) indicative of microbially sourced CH4 gas. However, near the base of ice-bonded permafrost and into the underlying non-frozen stratigraphic section, an increase in ethane (C2) concentrations, decreases in C1/(C2 + C3) hydrocarbon gas ratios, and CH4-C isotopic (??13C CH4) data indicate the presence of hydrocarbon gases derived from a thermogenic source. The thermogenic gas below permafrost in the Mackenzie Delta likely migrated from deeper hydrocarbon accumulations and/or directly from thermally mature hydrocarbon source rocks.

The effects of hydrological dynamics on benthic diatom community structure in a highly stratified estuary: The case of the Ebro Estuary (Catalonia, Spain)

NASA Astrophysics Data System (ADS)

Rovira, L.; Trobajo, R.; Leira, M.; Ibáñez, C.

2012-04-01

This study of the distribution of benthic diatom assemblages and their relationship with environmental factors in a highly stratified Mediterranean estuary, i.e. the Ebro Estuary, shows the importance of hydrological dynamics to explain the features of the diatom community in such an estuary, where river flow magnitude and fluctuations imply strong physicochemical variability especially in sites close to the sea. Eight sites along the estuary were sampled during 2007-2008 both at superficial and deep water layers, in order to gather both horizontal and vertical estuarine physicochemical and hydrological gradients. Canonical Variates Analysis and Hierarchical Cluster Analysis segregated diatom community in two assemblages depending on the dynamics of the salt-wedge. The diatom assemblages of riverine conditions (i.e. without salt-wedge influence) where characterised by high abundances of Cocconeis placentula var. euglypta and Amphora pediculus, meanwhile high abundances of Nizschia frustulum and Nitzschia inconspicua were characteristic of estuarine conditions (i.e. under salt-wedge influence). Redundancy Analysis showed that both diatom assemblages responded seasonally to Ebro River flows, especially in estuarine conditions, where fluctuating conditions affected diatom assemblages both at spatial and temporal scale.

Multiple stressor effects on biological quality elements in the Ebro River: Present diagnosis and predicted responses.

PubMed

Herrero, Albert; Gutiérrez-Cánovas, Cayetano; Vigiak, Olga; Lutz, Stefanie; Kumar, Rohini; Gampe, David; Huber-García, Verena; Ludwig, Ralf; Batalla, Ramon; Sabater, Sergi

2018-07-15

Multiple abiotic stressors affect the ecological status of water bodies. The status of waterbodies in the Ebro catchment (NE Spain) is evaluated using the biological quality elements (BQEs) of diatoms, invertebrates and macrophytes. The multi-stressor influence on the three BQEs was evaluated using the monitoring dataset available from the catchment water authority. Nutrient concentrations, especially total phosphorus (TP), affected most of the analyzed BQEs, while changes in mean discharge, water temperature, or river morphology did not show significant influences. Linear statistical models were used to evaluate the change of water bodies' ecological status under different combinations of future socioeconomic and climate scenarios. Changes in land use, rainfall, water temperature, mean discharge, TP and nitrate concentrations were modeled according to the future scenarios. These revealed an evolution of the abiotic stressors that could lead to a general decrease in the ecosystem quality of water bodies within the Ebro catchment. This deterioration was especially evidenced on the diatoms and invertebrate biological indices, mainly because of the foreseen increase in TP concentrations. Water bodies located in the headwaters were seen as the most sensitive to future changes. Copyright © 2018 The Author(s). Published by Elsevier B.V. All rights reserved.

A NEW METHOD FOR ENVIRONMENTAL FLOW ASSESSMENT BASED ON BASIN GEOLOGY. APPLICATION TO EBRO BASIN.

PubMed

2018-02-01

The determination of environmental flows is one of the commonest practical actions implemented on European rivers to promote their good ecological status. In Mediterranean rivers, groundwater inflows are a decisive factor in streamflow maintenance. This work examines the relationship between the lithological composition of the Ebro basin (Spain) and dry season flows in order to establish a model that can assist in the calculation of environmental flow rates.Due to the lack of information on the hydrogeological characteristics of the studied basin, the variable representing groundwater inflows has been estimated in a very simple way. The explanatory variable used in the proposed model is easy to calculate and is sufficiently powerful to take into account all the required characteristics.The model has a high coefficient of determination, indicating that it is accurate for the intended purpose. The advantage of this method compared to other methods is that it requires very little data and provides a simple estimate of environmental flow. It is also independent of the basin area and the river section order.The results of this research also contribute to knowledge of the variables that influence low flow periods and low flow rates on rivers in the Ebro basin.

Towards the assessment of climate change and human activities impacts on the water resources of the Ebro catchment (Spain)

NASA Astrophysics Data System (ADS)

Milano, M.; Ruelland, D.; Dezetter, A.; Ardoin-Bardin, S.; Thivet, G.; Servat, E.

2012-04-01

Worldwide studies modelling the hydrological response to global changes have proven the Mediterranean area as one of the most vulnerable region to water crisis. It is characterised by limited and unequally distributed water resources, as well as by important development of its human activities. Since the late 1950s, water demand in the Mediterranean basin has doubled due to a significant expansion of irrigated land and urban areas, and has maintained on a constant upward curve. The Ebro catchment, third largest Mediterranean basin, is very representative of this context. Since the late 1970s, a negative trend in mean rainfall has been observed as well as an increase in mean temperature. Meanwhile, the Ebro River discharge has decreased by about 40%. However, climate alone cannot explain this downward trend. Another factor is the increase in water consumption for agricultural and domestic uses. Indeed, the Ebro catchment is a key element in the Spanish agricultural production with respectively 30% and 60% of the meat and fruit production of the country. Moreover, population has increased by 20% over the catchment since 1970 and the number of inhabitant doubles each summer due to tourism attraction. Finally, more than 250 storage dams have been built over the Ebro River for hydropower production and irrigation water supply purposes, hence regulating river discharge. In order to better understand the respective influence of climatic and anthropogenic pressures on the Ebro hydrological regime, an integrated water resources modelling framework was developed. This model is driven by water supplies, generated by a conceptual rainfall-runoff model and by a storage dam module that accounts for water demands and environmental flow requirements. Water demands were evaluated for the most water-demanding sector, i.e. irrigated agriculture (5 670 Hm3/year), and the domestic sector (252 Hm3/year), often defined as being of prior importance for water supply. A water allocation module has also been implemented in the model. The ability of water resources to satisfy the water demands is assessed by computing a water allocation index which depends on site priorities and supply preferences. This modelling framework was applied to eight sub-catchments, each one representative of typical climatic or water use conditions within the basin, over the 1971-1990 period. The results show the interest of integrated modelling to address water resources vulnerability. The hydrological response to climatic and anthropogenic variations witnesses the influence of both these pressures on water resources availability. Moreover, the water allocation index makes it possible to highlight the growing competition among users, especially during the summer season. The developed methodology hence provides us a more complete analysis to support decision-making compared to uncoupled analysis. This study is a first step towards evaluating future water resources availability and ability to satisfy water demands under climatic and anthropogenic pressures scenarios.

Depositional facies and aqueous-solid geochemistry of travertine-depositing hot springs (Angel Terrace, Mammoth Hot Springs, Yellowstone National Park, U.S.A.)

NASA Technical Reports Server (NTRS)

Fouke, B. W.; Farmer, J. D.; Des Marais, D. J.; Pratt, L.; Sturchio, N. C.; Burns, P. C.; Discipulo, M. K.

2000-01-01

Petrographic and geochemical analyses of travertine-depositing hot springs at Angel Terrace, Mammoth Hot Springs, Yellowstone National Park, have been used to define five depositional facies along the spring drainage system. Spring waters are expelled in the vent facies at 71 to 73 degrees C and precipitate mounded travertine composed of aragonite needle botryoids. The apron and channel facies (43-72 degrees C) is floored by hollow tubes composed of aragonite needle botryoids that encrust sulfide-oxidizing Aquificales bacteria. The travertine of the pond facies (30-62 degrees C) varies in composition from aragonite needle shrubs formed at higher temperatures to ridged networks of calcite and aragonite at lower temperatures. Calcite "ice sheets", calcified bubbles, and aggregates of aragonite needles ("fuzzy dumbbells") precipitate at the air-water interface and settle to pond floors. The proximal-slope facies (28-54 degrees C), which forms the margins of terracette pools, is composed of arcuate aragonite needle shrubs that create small microterracettes on the steep slope face. Finally, the distal-slope facies (28-30 degrees C) is composed of calcite spherules and calcite "feather" crystals. Despite the presence of abundant microbial mat communities and their observed role in providing substrates for mineralization, the compositions of spring-water and travertine predominantly reflect abiotic physical and chemical processes. Vigorous CO2 degassing causes a +2 unit increase in spring water pH, as well as Rayleigh-type covariations between the concentration of dissolved inorganic carbon and corresponding delta 13C. Travertine delta 13C and delta 18O are nearly equivalent to aragonite and calcite equilibrium values calculated from spring water in the higher-temperature (approximately 50-73 degrees C) depositional facies. Conversely, travertine precipitating in the lower-temperature (< approximately 50 degrees C) depositional facies exhibits delta 13C and delta 18O values that are as much as 4% less than predicted equilibrium values. This isotopic shift may record microbial respiration as well as downstream transport of travertine crystals. Despite the production of H2S and the abundance of sulfide oxidizing microbes, preliminary delta 34S data do not uniquely define the microbial metabolic pathways present in the spring system. This suggests that the high extent of CO2 degassing and large open-system solute reservoir in these thermal systems overwhelm biological controls on travertine crystal chemistry.

DOE Office of Scientific and Technical Information (OSTI.GOV)

Fouke, B.W.; Farmer, J.D.; Des Marais, D.J.

Petrographic and geochemical analyses of travertine-depositing hot springs at Angel Terrace, Mammoth Hot Springs, Yellowstone National Park, have been used to define five depositional facies along the spring drainage system. Spring waters are expelled in the vent facies at 71 to 73 C and precipitate mounded travertine composed of aragonite needle botryoids. The apron and channel facies (43--72 C) is floored by hollow tubes composed of aragonite needle botryoids that encrust sulfide-oxidizing Aquificales bacteria. The travertine of the pond facies (30--62 C) varies in composition from aragonite needle shrubs formed at higher temperatures to ridged networks of calcite and aragonitemore » at lower temperatures. Calcite ice sheets, calcified bubbles, and aggregates of aragonite needles (fuzzy dumbbells) precipitate at the air-water interface and settle to pond floors. The proximal-slope facies (28--54 C), which forms the margins of terracette pools, is composed of arcuate aragonite needle shrubs that create small microterracettes on the steep slope face. Finally, the distal-slope facies (28--30 C) is composed of calcite spherules and calcite feather crystals. Despite the presence of abundant microbial mat communities and their observed role in providing substrates for mineralization, the compositions of spring-water and travertine predominantly reflect abiotic physical and chemical processes. Vigorous CO{sub 2} degassing causes a +2 unit increase in spring water pH, as well as Rayleigh-type covariations between the concentration of dissolved inorganic carbon and corresponding {delta}{sup 13}C. Travertine {delta}{sup 13}C and {delta}{sup 18}O are nearly equivalent to aragonite and calcite equilibrium values calculated from spring water in the higher-temperature ({approximately}50--73 C) depositional facies. Conversely, travertine precipitating in the lower-temperature (<{approximately}50 C) depositional facies exhibits {delta}{sup 13}C and {delta}{sup 18}O values that are as much as 4% less than predicted equilibrium values. This isotopic shift may record microbial respiration as well as downstream transport of travertine crystals. Despite the production of H{sub 2}S and the abundance of sulfide-oxidizing microbes, preliminary {delta}{sub 34}S data do not uniquely define the microbial metabolic pathways present in the spring system. This suggests that the high extent of CO{sub 2} degassing and large open-system solute reservoir in these thermal systems overwhelm biological controls on travertine crystal chemistry.« less

Depositional facies and aqueous-solid geochemistry of travertine-depositing hot springs (Angel Terrace, Mammoth Hot Springs, Yellowstone National Park, U.S.A.).

PubMed

Fouke, B W; Farmer, J D; Des Marais, D J; Pratt, L; Sturchio, N C; Burns, P C; Discipulo, M K

2000-05-01

Petrographic and geochemical analyses of travertine-depositing hot springs at Angel Terrace, Mammoth Hot Springs, Yellowstone National Park, have been used to define five depositional facies along the spring drainage system. Spring waters are expelled in the vent facies at 71 to 73 degrees C and precipitate mounded travertine composed of aragonite needle botryoids. The apron and channel facies (43-72 degrees C) is floored by hollow tubes composed of aragonite needle botryoids that encrust sulfide-oxidizing Aquificales bacteria. The travertine of the pond facies (30-62 degrees C) varies in composition from aragonite needle shrubs formed at higher temperatures to ridged networks of calcite and aragonite at lower temperatures. Calcite "ice sheets", calcified bubbles, and aggregates of aragonite needles ("fuzzy dumbbells") precipitate at the air-water interface and settle to pond floors. The proximal-slope facies (28-54 degrees C), which forms the margins of terracette pools, is composed of arcuate aragonite needle shrubs that create small microterracettes on the steep slope face. Finally, the distal-slope facies (28-30 degrees C) is composed of calcite spherules and calcite "feather" crystals. Despite the presence of abundant microbial mat communities and their observed role in providing substrates for mineralization, the compositions of spring-water and travertine predominantly reflect abiotic physical and chemical processes. Vigorous CO2 degassing causes a +2 unit increase in spring water pH, as well as Rayleigh-type covariations between the concentration of dissolved inorganic carbon and corresponding delta 13C. Travertine delta 13C and delta 18O are nearly equivalent to aragonite and calcite equilibrium values calculated from spring water in the higher-temperature (approximately 50-73 degrees C) depositional facies. Conversely, travertine precipitating in the lower-temperature (< approximately 50 degrees C) depositional facies exhibits delta 13C and delta 18O values that are as much as 4% less than predicted equilibrium values. This isotopic shift may record microbial respiration as well as downstream transport of travertine crystals. Despite the production of H2S and the abundance of sulfide oxidizing microbes, preliminary delta 34S data do not uniquely define the microbial metabolic pathways present in the spring system. This suggests that the high extent of CO2 degassing and large open-system solute reservoir in these thermal systems overwhelm biological controls on travertine crystal chemistry.

A revision of the haploporinae nicoll, 1914 (digenea: haploporidae) from mullets (mugilidae): two new haploporine genera and a key to the genera of the subfamily.

PubMed

Blasco-Costa, Isabel; Montero, Francisco E; Gibson, David I; Balbuena, Juan Antonio; Kostadinova, Aneta

2009-03-01

Two new haploporine genera are established for parasites of mullets. Ragaia n. g. is erected for R. lizae n. sp. from Liza ramado in the Ebro Delta on the Mediterranean Coast of Spain. This new genus is distinguished by the unique combination of the following characters: a strongly muscular ventral sucker which is twice as large as the oral sucker; a large, muscular hermaphroditic sac similar in length to the ventral sucker; a saccular, thick-walled internal seminal vesicle which is larger than the external seminal vesicle; and the ovary and vitellarium located rather close to the posterior extremity. Pseudodicrogaster n. g. is erected to accommodate Dicrogaster japonica Machida, 1996, as P. japonica (Machida, 1996) n. comb., a parasite of Mugil cephalus L. off Fukaura, Japan. This genus is recognised on the basis of: the tubular condition of both the internal and external seminal vesicles, the latter being much shorter than the former; the sucker ratio; the massive pyriform hermaphroditic sac; the location of the testis; and the presence of two eye-spots in developed miracidia. A key to the nine recognised genera of the Haploporinae is presented.

Small-scale distribution characteristics of Munida spp. populations (Decapoda: Anomura) off the Catalan coasts (western Mediterranean)

NASA Astrophysics Data System (ADS)

Huguet, Carme; Maynou, Francesc; Abelló, Pere

2005-04-01

The small-scale distribution characteristics of three species of the anomuran genus Munida, namely Munida rutllanti, Munida intermedia and Munida tenuimana, have been studied on the lower shelf and upper-middle continental slope near the coasts of Tarragona and the Ebro delta region in the western Mediterranean. The differential bathymetric distribution showed that a fair degree of overlap exists between M. rutllanti and M. intermedia, with the former being mainly found at shallower depths. The size population structure of the three species showed that polymodality, as indicative of a longer life-span and of a higher degree of population structuring was more evident in the deeper-living species, whereas unimodality, as an indication of a recruitment dependent population, was more evident in the shallowest-occurring species. Geostatistics have been applied to determine the degree of spatial variability occurring in M. intermedia abundance, the better-sampled species. The Mantel test has been used to assess the significance of the overlap between the three species distributions as well as the relation between certain population parameters. A discussion on the population characteristics of M. rutllanti is made in relation with its expansion along the western Mediterranean in the last decades.

Microbial Risk Assessment of Tidal−Induced Urban Flooding in Can Tho City (Mekong Delta, Vietnam)

PubMed Central

Huynh, Thi Thao Nguyen; Van der Steen, Peter

2017-01-01

Public health risks from urban flooding are a global concern. Contaminated floodwater may expose residents living in cities as they are in direct contact with the water. However, the recent literature does not provide much information about this issue, especially for developing countries. In this paper, the health risk due to a flood event occurred in Can Tho City (Mekong Delta, Vietnam) on 7 October 2013 was investigated. The Quantitative Microbial Risk Assessment method was used in this study. The data showed that the pathogen concentrations were highly variable during the flood event and exceeded water standards for surface water. Per 10,000 people in contact with the floodwater, we found Salmonella caused the highest number of infections to adults and children (137 and 374, respectively), while E. coli caused 4 and 12 cases, per single event, respectively. The results show that further investigations on health risk related to flood issues in Can Tho City are required, especially because of climate change and urbanization. In addition, activities to raise awareness- about floods, e.g., “living with floods”, in the Mekong Delta should also consider health risk issues. PMID:29189715

Microbial Risk Assessment of Tidal-Induced Urban Flooding in Can Tho City (Mekong Delta, Vietnam).

PubMed

Nguyen, Hong Quan; Huynh, Thi Thao Nguyen; Pathirana, Assela; Van der Steen, Peter

2017-11-30

Public health risks from urban flooding are a global concern. Contaminated floodwater may expose residents living in cities as they are in direct contact with the water. However, the recent literature does not provide much information about this issue, especially for developing countries. In this paper, the health risk due to a flood event occurred in Can Tho City (Mekong Delta, Vietnam) on 7 October 2013 was investigated. The Quantitative Microbial Risk Assessment method was used in this study. The data showed that the pathogen concentrations were highly variable during the flood event and exceeded water standards for surface water. Per 10,000 people in contact with the floodwater, we found Salmonella caused the highest number of infections to adults and children (137 and 374, respectively), while E. coli caused 4 and 12 cases, per single event, respectively. The results show that further investigations on health risk related to flood issues in Can Tho City are required, especially because of climate change and urbanization. In addition, activities to raise awareness- about floods, e.g., "living with floods", in the Mekong Delta should also consider health risk issues.

The 14 July 2001 hailstorm in northeastern Spain: diagnosis of the meteorological situation

NASA Astrophysics Data System (ADS)

Tudurí, E.; Romero, R.; López, L.; García, E.; Sánchez, J. L.; Ramis, C.

Hail producing thunderstorms developed over the Ebro valley (NE Spain) during the evening of 14 July 2001, affecting mainly the Lerida province. Hail stones as large as 3 cm in diameter produced damage on 2979 ha of fruit trees, vineyard and cornfields. The thunderstorms developed ahead of a cold front, which was moving from the Gulf of Biscay towards inland Spain. Meteosat images and radar data demonstrate that the storms formed over the central part of the Ebro valley and moved towards the east attaining their maximum development in Lerida province. A diagnosis, using data from ECMWF, shows that at surface there was a cyclonic circulation over northeastern Spain and at medium levels (500 hPa) a trough with cold air located towards northwestern Spain. The Q vector diagnosis demonstrates that the forcing for upward vertical motions was rather weak at both low and medium levels over the area where the thunderstorms developed. However, a significant frontogenesis contribution is identified over the Ebro valley. A more detailed handmade analysis shows that over the Ebro valley there was a thermal mesolow, which favoured the inland entrance of humid air from the Mediterranean. Frontogenesis and the humid air intrusion coexisted where remote-sensing observations indicated that the storms developed. A numerical study of the event using the MM5 model has been carried out. In a control experiment, the model is able to develop the thermal mesolow and reproduce, quite well, the convergence produced by the front as well as the timing of the event. In order to study the genesis and influence of the thermal mesolow, another simulation has been performed without consideration of solar radiation. The results indicate that the thermal mesolow does not develop, the convergence ahead of the cold front is significantly weakened and the front itself becomes increasingly progressive. As a result, thunderstorms do not develop and very little precipitation falls in the area.

Salinity trends in the Ebro River (Spain)

NASA Astrophysics Data System (ADS)

Lorenzo-Gonzalez, M.° Angeles; Isidoro, Daniel; Quilez, Dolores

2016-04-01

In the Ebro River Basin (Spain), the increase in water diversion for irrigation (following the increase in irrigated area) and the recovery of natural vegetation in the upper reaches, along with climate change have induced changes in the river flow and its associated salt loads. This study was supported by the Ebro River Basin Administration (CHE) and aimed to establish the trends in the salt concentrations and loads of the Ebro River at Tortosa (no 027, the extreme downstream gauging station). The CHE databases from 1972-73 to 2011-12, including mean monthly flows (Q) and concentration readings (electrical conductivity converted to total dissolved solids -TDS- by regression) from monthly grab samples, have been used. The trends were established by (i) harmonic regression analysis; (ii) linear regression by month; and (iii) the non-parametric Mann-Kendall method. Additionally, (iv) the regressions of TDS on Q in the current and previous months were established, allowing for analyzing separately the trends in TDS linked to- (TDSq) and independent of- (TDSaj) the observed changes in flow. In all cases, the trends were analyzed for different periods within the full span 1973-2012 (1973 to 2012, 1981 to 2012, 1990-2012 and 2001-2012), trying to account for periods with sensibly similar patterns of land use change. An increase in TDS was found for all the periods analyzed that was lower as shorter periods were used, suggesting that lower salinity changes might be taking place in the last years, possibly due to the reduction in the rate of irrigation development and to the on-going irrigation modernization process. The higher seasonal TDS increases were found in autumn and winter months and the increase in TDS was linked both to intrinsic changes in salinity (TDSaj) and to the observed decrease in flow (TDSq). On the other hand, the salt loads decreased, especially in autumn, as a result of the observed flow decrease. These results are based on the observed evolution of flows and salinity in 1973-2012 and can only be extrapolated into the future if the drivers of this evolution (climate and land use changes) remain unchanged in the following years, what is uncertain. A more comprehensive methodology to estimate the effects of irrigation on water salinity has been developed based on a mass balance approach. Using actual data on volumes and concentrations of return flows observed in the basin (dependent on the actual salinity of soils and waters and the irrigation systems, among other factors), the return flows of the irrigated areas are aggregated to match the actual flows and loads observed in the Ebro River. Once this balance is satisfied, the effect of new irrigated areas, drainage water reuse, irrigation modernization, or climate change would be incorporated to the balance yielding salinity forecasts based on planned irrigation developments and modernization or climate change predictions. A priori, irrigation modernization would produce lower, more concentrated volumes of return flows with lower salt loads that would result in lower TDS concentrations in the Ebro River.

In Situ Carbon and Sulfur Isotope Analysis of Archean Organic Matter and Pyrite

NASA Technical Reports Server (NTRS)

Williford, K. H.; Ushikubo, T.; LePot, K.; Kitajima, K.; Spicuzza, M. J.; Valley, J. W.; Hallman, C.; Summons, R.; Eigenbrode, J. L.

2012-01-01

Stable isotopic compositions of biologically important elements (e.g., C and S) in sedimentary rocks are valuable biosignatures to the extent that they indicate the presence and variable expression of microbial metabolisms in space and time. Strong interactions between the carbon and sulfur cycles (e.g., via organic matter remineralization during microbial sulfate reduction) make coordinated, in situ C and S isotope analysis by secondary ion mass spectrometry (SIMS) a particularly powerful tool. In rocks ranging in age from 2.7-2.5 Ga, expansions in the ranges of delta C-13 of organic matter and delta S-34 of pyrite likely reflect the increasing influence of oxygenic photosynthesis in the surface ocean (as well as methane and sulfur metabolisms in deeper waters), whereas the large range of mass independent sulfur isotope fractionation (Delta S-33) suggests that the atmosphere remained anoxic until approx 2.4 Gyr ago. We report in situ delta C-13 measurements of organic matter in the approx 2.7-2.6 Ga Carawine Dolomite, Marra Mamba Iron Formation, and Jeerinah, Wittenoom, and Tumbiana Formations, as well as the approx 2.5 Ga Mount McRae Shale. We also report in situ delta S-24 and Delta S-33 measurements of pyrite associated with organic matter in a subset of these samples. In a single square cm sample of the Tumbiana Formation with bulk delta C-13(sub org) of -49.7% (VPDB), two distinct kerogen types have delta C-13 values, measured in situ, consistent with oxygenic photosynthesis (-33%) and methane metabolism (-52%). In a sample from the ABDP-9 core, radiobitumen associated with a uraniferous mineral grain is C-13-enriched by 8% (-26.8%0) relative to average in situ kerogen (-34.9%0) and similar in delta C-13 to solvent extractable hydrocarbons from the Mount McRae Shale (avg delta C-13 = -27.1 %). Average reproducibility for delta C-13 was 0.4% (2 SD) using a 6 micron spot and 0.8% using a 3 micron spot. In situ sulfur isotope analyses of 33 authigenic pyrite grains in 3 samples of the ABDP-9 core using a 10 micron spot (2 SD reproducibility = 0.4% for delta S-34 and -0.1% for Delta S-33) show a range of 28.1 % in delta S-34 (-10.3 to 17.8%) and 13.3%0 in Delta S-33 (-3.8 to 9.5%), whereas the range from 132 bulk analyses across 84 m of core is 19.4% for delta S-34 and 11.5% for Delta S-33. Coordinated, in situ carbon and sulfur isotope analyses in one ABDP-9 sample are shown. In situ values from this kerogen-pyrite association are within 0.1% of the bulk value in the case of delta C-13 and higher by several permil in the case of delta S-34 and Delta S-33. Coordinated in situ carbon and sulfur isotope analyses in rocks deposited during key intervals of environmental change (e.g., the Great Oxidation Event) can refine our understanding of the mode and tempo of change. In Earth's oldest sedimentary rocks, and in extraterrestrial samples, these coordinated in situ analyses may reveal biosignatures in the form of isotopic correlations at the scale of individual microorganisms and their microhabitats.

The influence of preservation method and time on the delta13C value of dissolved inorganic carbon in water samples.

PubMed

Taipale, Sami J; Sonninen, Eloni

2009-08-30

The precise delta(13)C value of dissolved inorganic carbon (DIC) is important for various types of ecological studies. Without a preservation agent, microbial degradation of organic compounds continues in water samples and the delta(13)C value of DIC will become more depleted with time. HgCl(2) or acidification is often used to prevent microbial activity in water samples collected for carbon isotope ratio analyses of DIC. Mercury compounds are toxic and result in waste disposal problems. Other inhibiting agents or preservation methods are therefore needed. Two possible solutions are to use copper sulphate (CuSO(4)) as a preservative agent or to acidify water samples with phosphoric acid (H(3)PO(4)) within 12 mL measurement Exetainers (septum-capped vials). We prepared a set of lake water samples in three types of vials: glass vials with silicone/PTFE septa, high-density polyethylene vials (HD-PE, scintillation vials) and Exetainers (12 mL) with butyl rubber septa. Samples in glass and PE vials were preserved with and without CuSO(4), whereas lake water was injected into the Exetainer and acidified with H(3)PO(4). Isotope ratios were measured in two laboratories over 6 months. The delta(13)C values of DIC systematically increased with storage time for samples preserved in glass and PE vials with and without CuSO(4). A strong correlation between a decrease of CO(2) concentration and an increase in DIC delta(13)C values was found. The delta(13)C values and DIC concentrations were stable for 6 months in acidified samples stored in Exetainers with butyl rubber septa. Therefore, we conclude that the best method for up to 6 months of storage is to inject samples in the field into butyl rubber septum capped Exetainers containing H(3)PO(4), thereby avoiding the use of preservatives. 2009 John Wiley & Sons, Ltd.

Microbial Mercury Cycling in Sediments of the San Francisco Bay-Delta

USGS Publications Warehouse

Marvin-DiPasquale, M.; Agee, J.L.

2003-01-01

Microbial mercury (Hg) methylation and methylmercury (MeHg) degradation processes were examined using radiolabled model Hg compounds in San Francisco Bay-Delta surface sediments during three seasonal periods: late winter, spring, and fall. Strong seasonal and spatial differences were evident for both processes. MeHg production rates were positively correlated with microbial sulfate reduction rates during late winter only. MeHg production potential was also greatest during this period and decreased during spring and fall. This temporal trend was related both to an increase in gross MeHg degradation, driven by increasing temperature, and to a build-up in pore water sulfide and solid phase reduced sulfur driven by increased sulfate reduction during the warmer seasons. MeHg production decreased sharply with depth at two of three sites, both of which exhibited a corresponding increase in reduced sulfur compounds with depth. One site that was comparatively oxidized and alkaline exhibited little propensity for net MeHg production. These results support the hypothesis that net MeHg production is greatest when and where gross MeHg degradation rates are low and dissolved and solid phase reduced sulfur concentrations are low.

Microbial mercury cycling in sediments of the San Francisco Bay-Delta

USGS Publications Warehouse

Marvin-DiPasquale, Mark; Agee, Jennifer L.

2003-01-01

Microbial mercury (Hg) methylation and methylmercury (MeHg) degradation processes were examined using radiolabled model Hg compounds in San Francisco Bay-Delta surface sediments during three seasonal periods: late winter, spring, and fall. Strong seasonal and spatial differences were evident for both processes. MeHg production rates were positively correlated with microbial sulfate reduction rates during late winter only. MeHg production potential was also greatest during this period and decreased during spring and fall. This temporal trend was related both to an increase in gross MeHg degradation, driven by increasing temperature, and to a build-up in pore water sulfide and solid phase reduced sulfur driven by increased sulfate reduction during the warmer seasons. MeHg production decreased sharply with depth at two of three sites, both of which exhibited a corresponding increase in reduced sulfur compounds with depth. One site that was comparatively oxidized and alkaline exhibited little propensity for net MeHg production. These results support the hypothesis that net MeHg production is greatest when and where gross MeHg degradation rates are low and dissolved and solid phase reduced sulfur concentrations are low.

Isotopic evidence for methane-based chemosynthesis in the Upper Floridan aquifer food web.

PubMed

Opsahl, Stephen P; Chanton, Jeffrey P

2006-11-01

Anecdotal observations of the Dougherty plain cave crayfish (Cambarus cryptodytes), the Georgia blind cave salamander (Haideotriton wallacei), and albinistic isopods (Caecidotea sp.) at great depths below the land surface and distant from river corridors suggest that obligate aquifer-dwelling (troglobitic) organisms are widely distributed throughout the limestone Upper Floridan aquifer (UFA). One mechanism by which subterranean life can proliferate in an environment void of plant productivity is through a microbial food web that includes chemosynthesis. We examined this possibility in the UFA by measuring the isotopic composition ((13)C, (14)C, and (15)N) of tissues from troglobitic macrofauna. Organisms that were captured by cave divers entering into spring conduits had delta(13)C values that suggested plant matter as a primary food resource (cave crayfish, -24.6 +/- 2.7 per thousand, n = 9). In contrast, delta(13)C values were significantly depleted in organisms retrieved from wells drilled into areas of the UFA remote from spring and sinkhole conduits (cave crayfish -34.7 +/- 9.8 per thousand, n = 10). Depleted (13)C values in crayfish were correlated with radiocarbon (Delta(14)C) depletion relative to modern values. The results suggest that methane-based microbial chemosynthetic pathways support organisms living in the remote interior of the aquifer, at least in part.

Cyanobacterial mats: Microanalysis of community metabolism

NASA Technical Reports Server (NTRS)

Cohen, Y.; Bermudes, D.; Fischer, U.; Haddad, R.; Prufert, L.; Scheulderman-Suylen, T.; Shaw, T.

1985-01-01

The microbial communities in two sites were studied using several approaches: (1) light microscopy; (2) the measurement of microprofiles of oxygen and sulfide at the surface of the microbial mat; (3) the study of diurnal variation of oxygen and sulfides; (4) in situ measurement of photosynthesis and sulfate reduction and study of the coupling of these two processes; (5) measurement of glutathione in the upper layers of the microbial mat as a possible oxygen quencher; (6) measurement of reduced iron as a possible intermediate electron donor along the established redoxcline in the mats; (7) measurement of dissolved phosphate as an indicator of processes of break down of organic matter in these systems; and (8) measurement of carbon dioxide in the interstitial water and its delta C-13 in an attempt to understand the flow of CO2 through the systems. Microbial processes of primary production and initial degradation at the most active zone of the microbial mat were analyzed.

Integrated flood damage modelling in the Ebro river basin under hydrodynamic, socio-economic and environmental factors

NASA Astrophysics Data System (ADS)

Foudi, S.; Galarraga, I.; Osés, N.

2012-04-01

This paper presents a model of flood damage measurement. It studies the socio-economic and environmental potential damage of floods in the Ebro river basin. We estimate the damage to the urban, rural and environmental sectors. In these sectors, we make distinctions between residential, non residential, cultural, agricultural, public facilities and utilities, environmental and human subsectors. We focus on both the direct, indirect, tangible and intangible impacts. The residential damages refer to the damages on housing, costs of repair and cleaning as direct effects and the re-housing costs as an indirect effect. The non residential and agricultural impacts concern the losses to the economic sectors (industry, business, agricultural): production, capital losses, costs of cleaning and repairs for the direct costs and the consequences of the suspension of activities for the indirect costs. For the human sector, we refer to the physical impacts (injuries and death) in the direct tangible effects and to the posttraumatic stress as indirect intangible impact. The environmental impacts focus on a site of Community Interests (pSCIs) in the case study area. The case study is located the Ebro river basin, Spain. The Ebro river basin is the larger river basin in term of surface and water discharge. The Ebro river system is subject to Atlantic and Mediterranean climatic influences. It gathers most of its water from the north of Spain (in the Pyrenees Mountains) and is the most important river basin of Spain in term of water resources. Most of the flooding occurs during the winter period. Between 1900- 2010, the National Catalogue of Historical Floods identifies 372 events: meanly 33 events every 10 years and up to 58 during the 1990-2000. Natural floods have two origins: (i) persistent rainfalls in large sub basins raised up by high temperature giving rise to a rapid thaw in the Pyrenees, (ii) local rainfalls of short duration and high intensity that gives rise to rapid and wrenching floods. Our integrated model combines hydrologic, land use, environmental and economic data. The combination of the cadastral data with the flood characteristics (flow, depth, duration) for various periods of return enables to draw damage maps expressed as function of flood characteristics (Penning-Rowsell et al. 2005). This methodology also enables to illustrate consequences of risk prevention measures. We can thus measure the value of information in the alert system of Civil Protection Agency, give information on risks for urban development plans and simulate the consequences of hydraulic interventions like river bed cleaning. This methodology would then contribute to match with the requirements of the 2007 EU flood risk Management Directive (2007/60/CE).

Microbial secondary succession in a chronosequence of chalk grasslands.

PubMed

Kuramae, Eiko E; Gamper, Hannes A; Yergeau, Etienne; Piceno, Yvette M; Brodie, Eoin L; Desantis, Todd Z; Andersen, Gary L; van Veen, Johannes A; Kowalchuk, George A

2010-05-01

Although secondary succession has been studied extensively, we have little knowledge of the succession of soil-borne microbial communities. In this study, we therefore examined the structures of the microbial communities across two separate chronosequences of chalk grasslands in Limburg, the Netherlands, which are at different stages of secondary succession after being abandoned for between 17 and >66 years. Arable fields were also included in the investigation as non-abandoned references. Changes in the soil-borne microbial communities, as determined by phylogenetic microarray and quantitative PCR methodologies, were correlated with the prevailing environmental conditions related to vegetation and soil biochemistry. We observed clear patterns of microbial secondary succession related to soil age, pH and phosphate status, as exemplified by the overrepresentation of Verrucomicrobia, Acidobacteria, Gemmatimonadetes, and alpha-, delta- and epsilon-Proteobacteria at late successional stages. Moreover, effects of secondary succession versus changes in soil pH could be resolved, with pH significantly altering the trajectory of microbial succession.

Carbon and Hydrogen Isotope Fractionation in Lipid Biosynthesis of Piezophilic Bacteria - Implications for Studying Microbial Metabolism and Carbon Cycle in Deep Biosphere

NASA Astrophysics Data System (ADS)

Fang, J.; Dasgupta, S.; Zhang, L.; Li, J.; Kato, C.; Bartlett, D.

2012-12-01

Piezophiles are pressure-loving microorganisms, which reproduce preferentially or exclusively at pressures greater than atmospheric pressure. In this study, we examined stable carbon and hydrogen isotope fractionation in fatty acid biosynthesis of a piezophilic bacterium Moritella japonica DSK1. The bacterium was grown to stationary phase at hydrstatic pressures of 0.1, 10, 20, and 50 MPa (mega-passcal) in media prepared using sterilized natural seawater supplied with glucose as the sole carbon source. Bacterial cell biomass and individual fatty acids exhibited consistent pressure-dependent carbon and hydrogen isotope fractionations relative to substrates. Average carbon isotope fractionation (delta(FA-glucose)) at high pressures was much higher than that for surface bacteria: -15.7, -15.3, and -18.3‰ at 10, 20, and 50 MPa, respectively. For deltaD, fatty acids are more depleted in D relative to glucose than to water. Monounsaturated fatty acids are more depleted in D than corresponding saturated fatty acids by as much as 36‰. Polyunsaturated fatty acids are most depleted in D. For example, DHA (22:6omega3) has the most negative hydrogen isotope ratio (-170.91‰) (delta(FA-glucose) = -199, delta(FA-water) = -176). The observed isotope effects can be ascribed to the kinetics of enzymatic reactions that are affected by hydrostatic pressure and to operating of two independent lipid biosynthetic pathways of the piezophilic bacteria. Given that most of the biosphere lives under high pressures, our results have important important implications for studying microbial metabolism and carbon cycle in the deep biosphere.

Functional Diversity of Microbial Communities in Sludge-Amended Soils

NASA Astrophysics Data System (ADS)

Sun, Y. H.; Yang, Z. H.; Zhao, J. J.; Li, Q.

The BIOLOG method was applied to exploration of functional diversity of soil microbial communities in sludge-amended soils sampled from the Yangtze River Delta. Results indicated that metabolic profile, functional diversity indexes and Kinetic parameters of the soil microbial communities changed following soil amendment with sewage sludge, suggesting that the changes occurred in population of the microbes capable of exploiting carbon substrates and in this capability as well. The kinetic study of the functional diversity revealed that the metabolic profile of the soil microbial communities exhibited non-linear correlation with the incubation time, showing a curse of sigmoid that fits the dynamic model of growth of the soil microbial communities. In all the treatments, except for treatments of coastal fluvo-aquic soil amended with fresh sludge and dried sludge from Hangzhou, kinetic parameters K and r of the functional diversity of the soil microbial communities decreased significantly and parameter S increased. Changes in characteristics of the functional diversity well reflected differences in C utilizing capacity and model of the soil microbial communities in the sludge-amended soils, and changes in functional diversity of the soil microbial communities in a particular eco-environment, like soil amended with sewage sludge.

Dynamics of suprabenthos off the Ebro Delta (Catalan Sea: western Mediterranean): Spatial 13 and temporal patterns and relationships with environmental factors

NASA Astrophysics Data System (ADS)

Cartes, Joan E.; Papiol, Vanesa; Palanques, Albert; Guillén, Jorge; Demestre, Montserrat

2007-12-01

Dynamics of suprabenthos (hyperbenthos) composition and biomass have been simultaneously analyzed at two sites (S1, S2) off the Ebro River Delta (western Mediterranean). The stations, separated by ca. 5 km, differed in terms of depth (S1, 47 m; S2, 61 m), distance to the river mouth (S2 south of S1 and farther from the mouth) and fishing activity (S1 is a fishing ground; S2 is in an area closed to fishing). Peracarids (gammaridean amphipods, mysids, and cumaceans) were dominant among suprabenthic taxa. Seasonality was the main explanation for changes in taxonomic composition, with two seasonal groups indicated by MDS analyses (late summer-autumn, August-September, and November 2003; early summer, June and July samples). Peracarids at both S1 and S2 showed a peak of abundance in early July, with the highest densities reaching 5400 individuals (100 m) -2 at S2. There was a sharp decrease of density in late July (S1) and August (S2), then an increase in August (S1) and in September (S2), respectively. A secondary peak of abundance occurred in November (S1) and December (S2). There was, therefore, a similar picture in the dynamics of suprabenthic peracarids at both sites, though with a delay of 1 month at the deeper S2. This pattern coincided with changes in river discharge (specifically, a decrease of suprabenthos when influx was below 200 m 3 s -1 in the period June-September 2003), and with the formation of a thermal gradient (also in June-September 2003) between S1 and S2 associated with the 15 °C isotherm. In addition, the decrease of suprabenthos in late July-August also coincided with the massive occurrence of mucilaginous aggregates close to the bottom (at between 0 and 4 m above the bottom), in the usual habitat of suprabenthos. C/N ratios in sediments (an indicator of the degree of degradation of organic matter (OM)) increased during this peak abundance of mucilaginous aggregates. The impoverishment of sediments in total organic carbon (TOC) was parallel to the decline of suprabenthos in late July-August, which is consistent with negative or non-significant correlations (evidenced both by Spearman's r and multi-regression models) between suprabenthos densities and TOC. Zooplankton taxa (e.g., copepods, chaetognaths, and fish/crustacean larvae living in the entire water column) showed significant correlations with a number of environmental factors (basically temperature), in contrast to suprabenthos. In conclusion, suprabenthos abundance was influenced by a number of natural factors, both intra-annual (e.g., OM quality, river discharges) and inter-annual (e.g., accumulation of mucilaginous remains). Probably due to their swimming capability, suprabenthos were not influenced by trawling activity. Considering the high P/B exhibited by suprabenthic crustaceans in comparison to infauna, this compartment likely has an important role in regulating food webs in those communities submitted to high fishing impact.

7 CFR 205.605 - Nonagricultural (nonorganic) substances allowed as ingredients in or on processed products...

Code of Federal Regulations, 2010 CFR

2010-01-01

... in accordance with any restrictions specified in this section. (a) Nonsynthetics allowed: Acids (Alginic; Citric—produced by microbial fermentation of carbohydrate substances; and Lactic). Agar-agar... artificial preservative. Glucono delta-lactone—production by the oxidation of D-glucose with bromine water is...

Mississippi Delta native strain of Beauveria bassiana for control of TPB

USDA-ARS?s Scientific Manuscript database

Previous works reported that Beauveria bassiana (Balsamo) isolates from tarnished plant bug, TPB, Lygus lineolaris Palisot de Beauvois, (Hemiptera: Miridae) have shown a great potential to be used as a microbial control for TPB, particularly the NI8 strain, isolated from the TPB from Mississippi De...

Microbial H2 cycling does not affect δ2H values of ground water

USGS Publications Warehouse

Landmeyer, J.E.; Chapelle, F.H.; Bradley, P.M.

2000-01-01

Stable hydrogen-isotope values of ground water (δ2H) and dissolved hydrogen concentrations (H(2(aq)) were quantified in a petroleum-hydrocarbon contaminated aquifer to determine whether the production/consumption of H2 by subsurface microorganisms affects ground water &delta2H values. The range of &delta2H observed in monitoring wells sampled (-27.8 ‰c to -15.5 ‰c) was best explained, however, by seasonal differences in recharge temperature as indicated using ground water δ18O values, rather than isotopic exchange reactions involving the microbial cycling of H2 during anaerobic petroleum-hydrocarbon biodegradation. The absence of a measurable hydrogen-isotope exchange between microbially cycled H2 and ground water reflects the fact that the amount of H2 available from the anaerobic decomposition of petroleum hydrocarbons is small relative to the amount of hydrogen present in water, even though milligram per liter concentrations of readily biodegradable contaminants are present at the study site. Additionally, isotopic fractionation calculations indicate that in order for H2 cycling processes to affect δ2H values of ground water, relatively high concentrations of H2 (>0.080 M) would have to be maintained, considerably higher than the 0.2 to 26 nM present at this site and characteristic of anaerobic conditions in general. These observations suggest that the conventional approach of using δ2H and δ18O values to determine recharge history is appropriate even for those ground water systems characterized by anaerobic conditions and extensive microbial H2 cycling.

Railway deformation detected by DInSAR over active sinkholes in the Ebro Valley evaporite karst, Spain

NASA Astrophysics Data System (ADS)

Galve, J. P.; Castañeda, C.; Gutiérrez, F.

2015-11-01

Subsidence was measured for the first time on railway tracks in the central sector of Ebro Valley (NE Spain) using Differential Synthetic Aperture Radar Interferometry (DInSAR) techniques. This area is affected by evaporite karst and the analysed railway corridors traverse active sinkholes that produce deformations in these infrastructures. One of the railway tracks affected by slight settlements is the Madrid-Barcelona high-speed line, a form of transport infrastructure highly vulnerable to ground deformation processes. Our analysis based on DInSAR measurements and geomorphological surveys indicates that this line shows dissolution-induced subsidence and compaction of anthropogenic deposits (infills and embankments). Significant sinkhole-related subsidence was also measured by DInSAR techniques on the Castejón-Zaragoza conventional railway line. This study demonstrates that DInSAR velocity maps, coupled with detailed geomorphological surveys, may help in the identification of the railway track sections that are affected by active subsidence.

[Miranda de Ebro: Medical condition of the concentration camp in the autumn of 1943].

PubMed

Héraut, Louis-Armand

2008-01-01

Georges Morin's thesis (Algiers January 4 1944) allows to understand the sanitary conditions of the refugee camp at Miranda De Ebro (Spain) in the fall 1943. To avoid the Nazi occupation and the Obligatory Work Service in Germany 18,000 French got in Spain in 1943 and 10,000 including 39 physicians came through Miranda. The French were the majority and they created a Health Service separate from the official Spanish Health Service. The general dirtiness, the lack of water, the rudimentary conditions of lodging, the inadequacy and imbalance of food provoked two diseases among the young men: scabies and the so-called "mirandite" that is to say all the diarrheic diseases in the camp. Despite hard conditions of living the death rate in the camp remained smaller than crossing the Pyrenees from France where the danger threatened the escaped men.

Development and evaluation of a high-performance liquid chromatography/isotope ratio mass spectrometry methodology for delta13C analyses of amino sugars in soil.

PubMed

Bodé, Samuel; Denef, Karolien; Boeckx, Pascal

2009-08-30

Amino sugars have been used as biomarkers to assess the relative contribution of dead microbial biomass of different functional groups of microorganisms to soil carbon pools. However, little is known about the dynamics of these compounds in soil. The isotopic composition of individual amino sugars can be used as a tool to determine the turnover of these compounds. Methods to determine the delta(13)C of amino sugars using gas chromatography/combustion/isotope ratio mass spectrometry (GC/C/IRMS) have been proposed in literature. However, due to derivatization, the uncertainty on the obtained delta(13)C is too high to be used for natural abundance studies. Therefore, a new high-performance liquid chromatography/isotope ratio mass spectrometry (HPLC/IRMS) methodology, with increased accuracy and precision, has been developed. The repeatability on the obtained delta(13)C values when pure amino sugars were analyzed were not significantly concentration-dependent as long as the injected amount was higher than 1.5 nmol. The delta(13)C value of the same amino sugar spiked to a soil deviated by only 0.3 per thousand from the theoretical value. 2009 John Wiley & Sons, Ltd.

Characterization of the ZAT1p zinc transporter from Arabidopsis thaliana in microbial model organisms and reconstituted proteoliposomes.

PubMed

Bloss, Tanja; Clemens, Stephan; Nies, Dietrich H

2002-03-01

The ZAT1p zinc transporter from Arabidopsis thaliana (L.) Heynh. is a member of the cation diffusion facilitator (CDF) protein family. When heterologously expressed in Escherichia coli, ZAT1p bound zinc in a metal blot. Binding of zinc occurred mainly to the hydrophilic amino acid region from H182 to H232. A ZAT1p/ZAT1p*Delta(M1-I25) protein mixture was purified and reconstituted into proteoliposomes. Uptake of zinc into the proteoliposomes did not require a proton gradient across the liposomal membrane. ZAT1p did not transport cobalt, and transported cadmium at only 1% of the zinc transport rate. ZAT1p functioned as an uptake system for 65Zn2+ in two strains of the Gram-negative bacterium Ralstonia metallidurans, which were different in their content of zinc-efflux systems. The ZAT1 gene did not rescue increased zinc sensitivity of a Delta ZRC1single-mutant strain or of a Delta ZRC1 Delta COT1 double-mutant strain of Saccharomyces cerevisiae, but ZAT1 complemented this phenotype in a Delta SpZRC1 mutant strain of Schizosaccharomyces pombe.

Enhancing the understanding of earthworm feeding behaviour via the use of fatty acid delta13C values determined by gas chromatography-combustion-isotope ratio mass spectrometry.

PubMed

Dungait, Jennifer A J; Briones, Maria J I; Bol, Roland; Evershed, Richard P

2008-06-01

Litter-dwelling (epigeic) Lumbricus rubellus and soil-dwelling (endogeic) Allolobophora chlorotica earthworms were observed aggregating under C(3) (delta(13)C = -31.3 per thousand; delta(15)N = 10.7 per thousand) and C(4) (delta(13)C = -12.6 per thousand; delta(15)N = 7.5 per thousand) synthetic dung pats applied to a temperate grassland (delta(13)C = -30.3 per thousand; delta(15)N = 5.7 per thousand) in an experiment carried out for 372 days. Bulk delta(13)C values of earthworms collected from beneath either C(3) or C(4) dung after 28, 56, 112 and 372 days demonstrated that (i) L. rubellus beneath C(4) dung were significantly (13)C-enriched after 56 days (delta(13)C = -23.8 per thousand) and 112 days (delta(13)C = -22.4 per thousand) compared with those from C(3) dung treatments (56 days, delta(13)C = -26.5 per thousand; 112 days, delta(13)C = -27.0 per thousand), and (ii) A. chlorotica were 2.1 per thousand (13)C-enriched (delta(13)C = -24.2 per thousand) relative to those from C(3) dung (delta(13)C = -26.3 per thousand) treatments after 372 days. Bulk delta(15)N values did not suggest significant uptake of dung N by either species beneath C(3) or C(4) dung, but showed that the endogeic species (total mean delta(15)N = 3.3 per thousand) had higher delta(15)N values than the epigeic species (total mean delta(15)N = 5.4 per thousand). Although the two species exhibited similar fatty acid profiles, individual fatty acid delta(13)C values revealed extensive routing of dietary C into body tissue of L. rubellus, but minor incorporation into A. chlorotica. In particular, the direct incorporation of microbial biomarker fatty acids (iC(17:0), aC(17:0)) from (13)C-labelled dung in situ, the routing of dung C into de novo synthesised compounds (iC(20:4)(omega)(6),C(20:5)(omega)(3), and the assimilation of essential fatty acids ((C(18:1)(omega)(9), C(18:1)(omega(7), C(18:2)(omega(6), C(18:3)(omega)(3)) derived from dung, were determined. John Wiley & Sons, Ltd

Some previous ABL measurements in the Duero and Ebro valleys

NASA Astrophysics Data System (ADS)

Cuxart, Joan

2017-04-01

Evapotranspiration in semi-arid regimes needs improved understanding and representation in numerical models. Most of the Iberian Peninsula (IP) upper soil in summer becomes dry which makes of it a good area for field campaigning and numerical modeling. The two large basins at the northern IP, Duero (essentially non-irrigated cereals) and Ebro (large irrigated areas surrounded by typical mediterranean vegetation), have already seen some ABL research efforts in the last decades. The CIBA site is located over a plateau in the centre of the Duero basin. The plateau has shallow soil over karstic rock, contrarily to the lower areas that are essentially sedimentary. There radiation and fluxes of biogenic gases have been measured during decades by the University of Valladolid. Since 1998 the renovated 100m tower has been used to study the ABL, focusing essentially in the nocturnal stably stratified regime, the mesoscale low-level jets, the effet of surface heterogeneities and fog events. Studies have been supplemented with use of satellital information and high-resolution mesoscale simulations. The center of the Ebro basin was the site of ABL measurements between 2008 and 2011, when a surface energy budget (SEB) station and a WindRASS were operating in the middle of a large vineyard, occasionally irrigated during the summer season, keeping the soil always with enough water content to sustain the needs of the vines. Similar topics as for the Duero basin were inspected, here supplemented by the effect of the surrounding topography and the wet-dry terrain heterogeneities, both contributing to intensify the strength of low-level circulations. The SEB imbalance was quantified and the terms compared to the ones from the ECMWF model, finding very significant differences. The SEB and WindRASS were installed in 2015 in the large Pyrenean valley of La Cerdanya, through which the Segre river (a main tributary of the Ebro) flows. The soil in this area usually retains enough water during all year and does not experience summer soil dryness. This allows that rain events on the mountain may runoff as soon as they take place and a substantial part of the water may reach the dams downriver. A very strong cold pool develops any season of the year in the valley, which usually presents the lowest temperature values of Catalonia.

Spatial variation related to hydroloigc patterns and vegetation in greenhouse gas fluxes from the Mississippi Delta agricultural region

USDA-ARS?s Scientific Manuscript database

Methane (CH4), nitrous oxide (N2O), and carbon dioxide (CO2) fluxes from agricultural landscapes may contribute significantly to regional greenhouse gas budgets due to stimulation of soil microbial activity through fertilizer application and variable soil moisture effects. In this study, measuremen...

The effects of fire on greenhouse gas fluxes from mosses and lichen patches in the Yukon Kuskokwim Delta, AK.

NASA Astrophysics Data System (ADS)

Navarro-Perez, E.; Natali, S.; Schade, J. D.; Holmes, R. M.; Mann, P. J.

2017-12-01

Climate change has altered patterns of temperature, emissions of greenhouse gases and increased fire frequencies, especially in the Artic. Until recently, the Arctic has been a carbon (C) sink, but have begun releasing C in recent years, likely in response to warming temperatures, permafrost thaw and resulting changes in microbial processes. In addition, increases in fire frequency and intensity are changing vegetation patterns, particularly the relative importance of mosses and lichens. These changes alter soil temperatures, nutrient availability, and moisture, consequently affecting microbial processes and the release of greenhouse gases (GHG) such as N2O, CO2 and CH4. The objective of this research was to understand how recent fires in the Yukon-Kuskokwim River Delta in southwest Alaska are affecting the emission of GHGs from peat plateau soils. We hypothesized that the presence of mosses and lichen would change soil moisture and temperature, leading to changes in GHG production after fire. We also hypothesized that fire would increase soil nutrient availability, which would increase microbial process rates and GHG emissions. To test these hypotheses, we measured N2O, CH4 and CO2 fluxes from moss and lichen patches in three burned and unburned areas and collected soil cores for analyses of gravimetric soil moisture, carbon and nitrogen concentrations, and N mineralization rates. Soil temperatures were measured in the field with a thermocouple. Results demonstrated low but measurable CH4 emissions from all patches, suggesting peat plateaus in the YK Delta may be CH4 sources. In addition, CO2 emissions were higher in soils under lichen patches in burned areas than unburned controls. Finally, results suggest that burned areas have higher concentrations of extractable NH4 and NO3, and that increased N may be increasing soil respiration.

Liver transplant modulates gut microbial dysbiosis and cognitive function in cirrhosis.

PubMed

Bajaj, Jasmohan S; Fagan, Andrew; Sikaroodi, Masoumeh; White, Melanie B; Sterling, Richard K; Gilles, HoChong; Heuman, Douglas; Stravitz, Richard T; Matherly, Scott C; Siddiqui, Mohammed S; Puri, Puneet; Sanyal, Arun J; Luketic, Velimir; John, Binu; Fuchs, Michael; Ahluwalia, Vishwadeep; Gillevet, Patrick M

2017-07-01

Liver transplantation (LT) improves daily function and cognition in patients with cirrhosis, but a subset of patients can remain impaired. Unfavorable microbiota or dysbiosis is observed in patients with cirrhosis, but the effect of LT on microbial composition, especially with poor post-LT cognition, is unclear. The aims were to determine the effect of LT on gut microbiota and to determine whether gut microbiota are associated with cognitive dysfunction after LT. We enrolled outpatient patients with cirrhosis on the LT list and followed them until 6 months after LT. Cognition (Psychometric Hepatic Encephalopathy score [PHES]), health-related quality of life (HRQOL), and stool microbiota (multitagged sequencing for diversity and taxa) tests were performed at both visits. Persistent cognitive impairment was defined as a stable/worsening PHES. Both pre-/post-LT data were compared with age-matched healthy controls. We enrolled 45 patients (56 ± 7 years, Model for End-Stage Liver Disease score 26 ± 8). They received LT 6 ± 3 months after enrollment and were re-evaluated 7 ± 2 months after LT with a stable course. A significantly improved HRQOL, PHES, with increase in microbial diversity, increase in autochthonous, and decrease in potentially pathogenic taxa were seen after LT compared with baseline. However, there was continued dysbiosis and HRQOL/cognitive impairment after LT compared with controls in 29% who did not improve PHES after LT. In these, Proteobacteria relative abundance was significantly higher and Firmicutes were lower after LT, whereas the reverse occurred in the group that improved. Delta PHES was negatively correlated with delta Proteobacteria and positively with delta Firmicutes. In conclusion, LT improves gut microbiota diversity and dysbiosis compared with pre-LT baseline but residual dysbiosis remains compared with controls. There is cognitive and HRQOL enhancement in general after LT, but a higher Proteobacteria relative abundance change is associated with posttransplant cognitive impairment. Liver Transplantation 23 907-914 2017 AASLD. © 2017 by the American Association for the Study of Liver Diseases.

Testing the root-priming of soil organic matter decomposition using the isotopic signature of fossil fuel CO2

NASA Astrophysics Data System (ADS)

Bradley, Robert; Paterson, Eric; Chapman, Steve; Thornton, Barry; Sim, Allan

2013-04-01

Plant roots provide various forms of soil labile carbon (i.e., rhizodeposition), which stimulate the growth of heterotrophic bacteria in the rhizosphere. This, in turn, provides a food source for phagotrophic protozoa and other bacterivores, whose carbon:nutrient ratios are generally higher than those of their food source. In order to maintain their stoichiometric composition, bacterivores release their extra nutrients into the rhizosphere, where they may be absorbed by plant roots. Thus, rhizodeposition should reduce carbon limitation, but increase nutrient demand, of the soil microbial biomass. We hypothesized that this shift towards nutrient deficiency would stimulate the production of microbial enzymes that depolymerise soil organic matter into microbial available forms. In other words, roots should stimulate the decomposition of soil organic matter. We report on experiment where we tested such a "root-priming" effect using 3 contrasting plant species (Achillea millefolium, Lolium perenne, Trifolium repens). An agricultural soil, with a delta-13C value of approximately -14 ‰ , was transferred into 30 pots and planted with seeds of each species. A ring was inserted in the middle of each pot, and no seeds were planted within the ring. Plants were grown in a growth chamber designed to deliver 13C-depleted air. The resulting plant biomass had a delta-13C value of approximately -52 ‰ . On 7 occasions during the growth trial, pots were sampled for the flux and delta-13C value of soil CO2. Using similar data from control pots without plants, we compared the expected vs. observed contributions of CO2 from roots and soil organic matter. Results from this study revealed a negative root-priming effect for all three species. We discuss the experimental conditions that could have led to this observation, as well as the novelty and potential of our experimental protocol.

Seasonal variations of gene expression biomarkers in Mytilus galloprovincialis cultured populations: temperature, oxidative stress and reproductive cycle as major modulators.

PubMed

Jarque, Sergio; Prats, Eva; Olivares, Alba; Casado, Marta; Ramón, Montserrat; Piña, Benjamin

2014-11-15

The blue mussel Mytilus galloprovincialis has been used as monitoring organism in many biomonitoring programs because of its broad distribution in South European sea waters and its physiological characteristics. Different pollution-stress biomarkers, including gene expression biomarkers, have been developed to determine its physiological response to the presence of different pollutants. However, the existing information about basal expression profiles is very limited, as very few biomarker-based studies were designed to reflect the natural seasonal variations. In the present study, we analyzed the natural expression patterns of several genes commonly used in biomonitoring, namely ferritin, metallothionein, cytochrome P450, glutathione S-transferase, heat shock protein and the kinase responsive to stress KRS, during an annual life cycle. Analysis of mantle-gonad samples of cultured populations of M. galloprovincialis from the Delta del Ebro (North East Spain) showed natural seasonal variability of these biomarkers, pointing to temperature and oxidative stress as major abiotic modulators. In turn, the reproductive cycle, a process that can be tracked by VCLM7 expression, and known to be influenced by temperature, seems to be the major biotic factor involved in seasonality. Our results illustrate the influence of environmental factors in the physiology of mussels through their annual cycle, a crucial information for the correct interpretation of responses under stress conditions. Copyright © 2014 Elsevier B.V. All rights reserved.

Error of the modelled peak flow of the hydraulically reconstructed 1907 flood of the Ebro River in Xerta (NE Iberian Peninsula)

NASA Astrophysics Data System (ADS)

Lluís Ruiz-Bellet, Josep; Castelltort, Xavier; Carles Balasch, J.; Tuset, Jordi

2016-04-01

The estimation of the uncertainty of the results of the hydraulic modelling has been deeply analysed, but no clear methodological procedures as to its determination have been formulated when applied to historical hydrology. The main objective of this study was to calculate the uncertainty of the resulting peak flow of a typical historical flood reconstruction. The secondary objective was to identify the input variables that influenced the result the most and their contribution to peak flow total error. The uncertainty of 21-23 October 1907 flood of the Ebro River (NE Iberian Peninsula) in the town of Xerta (83,000 km2) was calculated with a series of local sensitivity analyses of the main variables affecting the resulting peak flow. Besides, in order to see to what degree the result depended on the chosen model, the HEC-RAS resulting peak flow was compared to the ones obtained with the 2D model Iber and with Manning's equation. The peak flow of 1907 flood in the Ebro River in Xerta, reconstructed with HEC-RAS, was 11500 m3·s-1 and its total error was ±31%. The most influential input variable over HEC-RAS peak flow results was water height; however, the one that contributed the most to peak flow error was Manning's n, because its uncertainty was far greater than water height's. The main conclusion is that, to ensure the lowest peak flow error, the reliability and precision of the flood mark should be thoroughly assessed. The peak flow was 12000 m3·s-1 when calculated with the 2D model Iber and 11500 m3·s-1 when calculated with the Manning equation.

Thermal shock and splash effects on burned gypseous soils from the Ebro Basin (NE Spain)

NASA Astrophysics Data System (ADS)

León, J.; Seeger, M.; Badía, D.; Peters, P.; Echeverría, M. T.

2014-03-01

Fire is a natural factor of landscape evolution in Mediterranean ecosystems. The middle Ebro Valley has extreme aridity, which results in a low plant cover and high soil erodibility, especially on gypseous substrates. The aim of this research is to analyze the effects of moderate heating on physical and chemical soil properties, mineralogical composition and susceptibility to splash erosion. Topsoil samples (15 cm depth) were taken in the Remolinos mountain slopes (Ebro Valley, NE Spain) from two soil types: Leptic Gypsisol (LP) in a convex slope and Haplic Gypsisol (GY) in a concave slope. To assess the heating effects on the mineralogy we burned the soils at 105 and 205 °C in an oven and to assess the splash effects we used a rainfall simulator under laboratory conditions using undisturbed topsoil subsamples (0-5 cm depth of Ah horizon). LP soil has lower soil organic matter (SOM) and soil aggregate stability (SAS) and higher gypsum content than GY soil. Gypsum and dolomite are the main minerals (>80%) in the LP soil, while gypsum, dolomite, calcite and quartz have similar proportions in GY soil. Clay minerals (kaolinite and illite) are scarce in both soils. Heating at 105 °C has no effect on soil mineralogy. However, heating to 205 °C transforms gypsum to bassanite, increases significantly the soil salinity (EC) in both soil units (LP and GY) and decreases pH only in GY soil. Despite differences in the content of organic matter and structural stability, both soils show no significant differences (P < 0.01) in the splash erosion rates. The size of pores is reduced by heating, as derived from variations in soil water retention capacity.

Fluvial response to climate variations and anthropogenic perturbations for the Ebro River, Spain in the last 4,000 years.

PubMed

Xing, Fei; Kettner, Albert J; Ashton, Andrew; Giosan, Liviu; Ibáñez, Carles; Kaplan, Jed O

2014-03-01

Fluvial sediment discharge can vary in response to climate changes and human activities, which in return influences human settlements and ecosystems through coastline progradation and retreat. To understand the mechanisms controlling the variations of fluvial water and sediment discharge for the Ebro drainage basin, Spain, we apply a hydrological model HydroTrend. Comparison of model results with a 47-year observational record (AD 1953-1999) suggests that the model adequately captures annual average water discharge (simulated 408 m(3)s(-1) versus observed 425 m(3)s(-1)) and sediment load (simulated 0.3 Mt yr(-1) versus observed 0.28 ± 0.04 Mt yr(-1)) for the Ebro basin. A long-term (4000-year) simulation, driven by paleoclimate and anthropogenic land cover change scenarios, indicates that water discharge is controlled by the changes in precipitation, which has a high annual variability but no long-term trend. Modeled suspended sediment load, however, has an increasing trend over time, which is closely related to anthropogenic land cover variations with no significant correlation to climatic changes. The simulation suggests that 4,000 years ago the annual sediment load to the ocean was 30.5 Mt yr(-1), which increased over time to 47.2 Mt yr(-1) (AD 1860-1960). In the second half of the 20th century, the emplacement of large dams resulted in a dramatic decrease in suspended sediment discharge, eventually reducing the flux to the ocean by more than 99% (mean value changes from 38.1 Mt yr(-1) to 0.3 Mt yr(-1)). Copyright © 2013 Elsevier B.V. All rights reserved.

The experimental flow to the Colorado River delta: Effects on carbon mobilization in a dry watercourse

NASA Astrophysics Data System (ADS)

Bianchi, Thomas S.; Butman, David; Raymond, Peter A.; Ward, Nicholas D.; Kates, Rory J. S.; Flessa, Karl W.; Zamora, Hector; Arellano, Ana R.; Ramirez, Jorge; Rodriguez, Eliana

2017-03-01

Here we report on the effects of an experimental flood on the carbon cycling dynamics in the dry watercourse of the Colorado River in Mexico. We observed post-flood differences in the degree of decay, age, and concentration of dissolved organic carbon (DOC), as well as dissolved CH4 and CO2 concentrations throughout the study site. Our results indicate that this flooded waterway was a limited source of CH4 and CO2 to the atmosphere during the event and that DOC age increased with time of flooding. Based on our findings, we suggest that the interplay between storage and mobilization of carbon and greenhouse gases in arid and semiarid regions is potentially sensitive to changing climate conditions, particularly hydrologic variability. Changes in the radiocarbon age of DOC throughout the flooding event suggest that organic matter (OM) that had been stored for long periods (e.g., millennial) was mobilized by the flooding event along with CO2. The OM residing in the dry riverbed that was mobilized into floodwaters had a signature reflective of degraded vascular plant OM and microbial biomass. Whether this microbial OM was living or dead, our findings support previous work in soils and natural waters showing that microbial OM can remain stable and stored in ecosystems for long time periods. As human appropriation of water resources continues to increase, the episodic drying and rewetting of once natural riverbeds and deltas may fundamentally alter the processing and storage of carbon in such systems.

Railway deformation detected by DInSAR over active sinkholes in the Ebro Valley evaporite karst, Spain

NASA Astrophysics Data System (ADS)

Galve, J. P.; Castañeda, C.; Gutiérrez, F.

2015-06-01

Previously not measured subsidence on railway tracks was detected using DInSAR displacement maps produced for the central sector of Ebro Valley (NE Spain). This area is affected by evaporite karst and the analyzed railway corridors traverse active sinkholes that produce deformations in these infrastructures. One of the railway tracks affected by slight settlements corresponds to the Madrid-Barcelona high-speed line, a transport infrastructure highly vulnerable to ground deformation processes. Our analysis based on DInSAR measurements and geomorphological surveys indicate that this line show dissolution-induced subsidence and compaction of anthropogenic deposits (infills and embankments). By using DInSAR techniques, it was also measured the significant subsidence related to the activity of sinkholes in the Castejón-Zaragoza conventional railway line. Thus, this study demonstrate that DInSAR velocity maps coupled with detailed geomorphological surveys may help in the identification of the sectors of railway tracks that may compromise the safety of travellers.

Freshwater macroinvertebrate samples from a water quality monitoring network in the Iberian Peninsula

PubMed Central

Escribano, Nora; Oscoz, Javier; Galicia, David; Cancellario, Tommaso; Durán, Concha; Navarro, Patricia; Ariño, Arturo H.

2018-01-01

This dataset gathers information about the macroinvertatebrate samples and environmental variables collected on rivers of the Ebro River Basin (NE Iberian Peninsula), the second largest catchment in the Iberian Peninsula. The collection is composed of 1,776 sampling events carried out between 2005 and 2015 at more than 400 sampling sites. This dataset is part of a monitoring network set up by the Ebro Hydrographic Confederation, the official body entrusted with the care of the basin, to fulfill the requirements of the European Water Framework Directive. Biological indices based on the freshwater macroinvertebrate communities were used to evaluate the ecological status of the water bodies within the basin. Samples were qualitatively screened for all occurring taxa. Then, all individuals from all taxa in a quantitative subsample of each sample were counted. Biological indices were calculated to estimate water quality at each sampling site. All samples are kept at the Museum of Zoology of the University of Navarra. PMID:29870034

Freshwater macroinvertebrate samples from a water quality monitoring network in the Iberian Peninsula.

PubMed

Escribano, Nora; Oscoz, Javier; Galicia, David; Cancellario, Tommaso; Durán, Concha; Navarro, Patricia; Ariño, Arturo H

2018-06-05

This dataset gathers information about the macroinvertatebrate samples and environmental variables collected on rivers of the Ebro River Basin (NE Iberian Peninsula), the second largest catchment in the Iberian Peninsula. The collection is composed of 1,776 sampling events carried out between 2005 and 2015 at more than 400 sampling sites. This dataset is part of a monitoring network set up by the Ebro Hydrographic Confederation, the official body entrusted with the care of the basin, to fulfill the requirements of the European Water Framework Directive. Biological indices based on the freshwater macroinvertebrate communities were used to evaluate the ecological status of the water bodies within the basin. Samples were qualitatively screened for all occurring taxa. Then, all individuals from all taxa in a quantitative subsample of each sample were counted. Biological indices were calculated to estimate water quality at each sampling site. All samples are kept at the Museum of Zoology of the University of Navarra.

Historical variations in the stable isotope composition of mercury in Arctic lake sediments.

PubMed

Jackson, Togwell A; Muir, Derek C G; Vincent, Warwick F

2004-05-15

The stable isotope composition of mercury (Hg) in a dated core from the anoxic zone of a saline, meromictic Arctic lake was found to vary as a complex function of the age and chemical composition of the sediment. Throughout the stratigraphic sequence, which spans the years 1899-1997, the ratios 198Hg/202Hg, 199Hg/202Hg, 200Hg/202Hg, 201Hg/202Hg, and 204Hg/202Hg expressed as delta-values (per mil deviations relative to a standard) reveal enrichment in 198Hg, 199Hg, 200Hg, and 201Hg, with depletion in 204Hg, the degree of enrichment varying inversely with atomic mass. A plot of delta198Hg, delta199Hg, delta200Hg, and delta201Hg against depth gave parallel profiles characterized by large, regular undulations superimposed on an overall trend toward increase with depth (i.e. age), and the delta204Hg profile is a mirror image of them. The delta198Hg, delta199Hg, delta200Hg, and delta201Hg values of the oldest (1899-1929) strata vary inversely with NH2OH.HCl/HNO3-extractable manganese concentration, but those of the youngest (1963-1997) strata give a positive correlation; intermediate (1936-1956) strata show no correlation and negligible variation in delta-values, possibly signifying a transition phase in which the two opposite trends offset each other. The delta-values show similar but weaker relationships with organic carbon. The results strongly suggest fractionation of Hg isotopes by microbial activities linked to oxidation-reduction reactions in the lake, although effects of isotopic signatures indicative of the sources of the Hg have not been ruled out. The radical change in the nature of the relationship between 6-values and sediment chemistry over time may reflect environmental and biotic changes that altered the isotope-fractionating processes. These findings imply that variations in the isotopic makeup of Hg, together with related physical, chemical, and biological data, could yield important new information about the biogeochemical cycle of Hg.

Role of Fire and Landscape Position on Dissolved Organic Carbon Composition and Reactivity in the Yukon-Kuskokwim Delta, Alaska

NASA Astrophysics Data System (ADS)

Bristol, E. M.; Dabrowski, J. S.; Jimmie, J. A.; Peter, D. L.; Holmes, R. M.; Mann, P. J.; Natali, S.; Schade, J. D.

2017-12-01

The Yukon-Kuskokwim Delta in southwest, Alaska is characterized by discontinuous permafrost, which is vulnerable to thaw induced by climate change. Recent fires in the delta have caused dramatic changes in the landscape, likely changing carbon dynamics, and potentially altering dissolved organic carbon (DOC) composition and DOC concentrations in aquatic ecosystems. These changes, in turn, likely affect microbial respiration and hydrologic C export from watersheds in the delta. In this study, we investigated how landscape position and fire history drive changes in DOC composition and reactivity in aquatic ecosystems. We surveyed soil pore waters, ponds, fens, and streams at varying landscape positions in burned and unburned landscapes. We also conducted a laboratory experiment to compare the role of photooxidation, photodegradation, and microbial respiration in altering DOC composition and concentration. Surface waters in burned regions were higher in temperature and inorganic nitrogen concentrations. Higher conductivity in burned areas suggests that fire is deepening the water table, causing water to flow through a more mineral soil horizon. While DOC concentrations did not vary significantly by landscape position or fire history, optical properties of DOC suggest that DOC molecular weight is lower in burned regions and decreases along flow paths. Similarly, our incubation experiment indicated that changes in DOC composition are driven by exposure to light more than bacterial respiration, and that photochemical reactivity declines along flow paths. Percent DOC loss was greatest in waters exposed to both light and bacterial, and percent DOC loss from burned watershed waters was correlated with optical properties. Based on our findings, we predict that the combination of increased surface water temperatures, increased inorganic nitrogen concentrations, and lower molecular weight DOC will increase bacterial respiration of DOC in watersheds burned by wildfire. Further research is needed to better understand the changing hydrology in burned tundra, and the relationship between photooxidation and biological mineralization of DOC.

Metagenomic analysis reveals significant changes of microbial compositions and protective functions during drinking water treatment.

PubMed

Chao, Yuanqing; Ma, Liping; Yang, Ying; Ju, Feng; Zhang, Xu-Xiang; Wu, Wei-Min; Zhang, Tong

2013-12-19

The metagenomic approach was applied to characterize variations of microbial structure and functions in raw (RW) and treated water (TW) in a drinking water treatment plant (DWTP) at Pearl River Delta, China. Microbial structure was significantly influenced by the treatment processes, shifting from Gammaproteobacteria and Betaproteobacteria in RW to Alphaproteobacteria in TW. Further functional analysis indicated the basic metabolic functions of microorganisms in TW did not vary considerably. However, protective functions, i.e. glutathione synthesis genes in 'oxidative stress' and 'detoxification' subsystems, significantly increased, revealing the surviving bacteria may have higher chlorine resistance. Similar results were also found in glutathione metabolism pathway, which identified the major reaction for glutathione synthesis and supported more genes for glutathione metabolism existed in TW. This metagenomic study largely enhanced our knowledge about the influences of treatment processes, especially chlorination, on bacterial community structure and protective functions (e.g. glutathione metabolism) in ecosystems of DWTPs.

Combining Microbial Enzyme Kinetics Models with Light Use Efficiency Models to Predict CO2 and CH4 Ecosystem Exchange from Flooded and Drained Peatland Systems

NASA Astrophysics Data System (ADS)

Oikawa, P. Y.; Jenerette, D.; Knox, S. H.; Sturtevant, C. S.; Verfaillie, J. G.; Baldocchi, D. D.

2014-12-01

Under California's Cap-and-Trade program, companies are looking to invest in land-use practices that will reduce greenhouse gas (GHG) emissions. The Sacramento-San Joaquin River Delta is a drained cultivated peatland system and a large source of CO2. To slow soil subsidence and reduce CO2 emissions, there is growing interest in converting drained peatlands to wetlands. However, wetlands are large sources of CH4 that could offset CO2-based GHG reductions. The goal of our research is to provide accurate measurements and model predictions of the changes in GHG budgets that occur when drained peatlands are restored to wetland conditions. We have installed a network of eddy covariance towers across multiple land use types in the Delta and have been measuring CO2 and CH4 ecosystem exchange for multiple years. In order to upscale these measurements through space and time we are using these data to parameterize and validate a process-based biogeochemical model. To predict gross primary productivity (GPP), we are using a simple light use efficiency (LUE) model which requires estimates of light, leaf area index and air temperature and can explain 90% of the observed variation in GPP in a mature wetland. To predict ecosystem respiration we have adapted the Dual Arrhenius Michaelis-Menten (DAMM) model. The LUE-DAMM model allows accurate simulation of half-hourly net ecosystem exchange (NEE) in a mature wetland (r2=0.85). We are working to expand the model to pasture, rice and alfalfa systems in the Delta. To predict methanogenesis, we again apply a modified DAMM model, using simple enzyme kinetics. However CH4 exchange is complex and we have thus expanded the model to predict not only microbial CH4 production, but also CH4 oxidation, CH4 storage and the physical processes regulating the release of CH4 to the atmosphere. The CH4-DAMM model allows accurate simulation of daily CH4 ecosystem exchange in a mature wetland (r2=0.55) and robust estimates of annual CH4 budgets. The LUE- and CH4-DAMM models will advance understanding of biogeochemisty and microbial processes in managed peatland systems as well as aid the development of a GHG protocol in the Delta that can provide financial incentive to farmers to reduce GHG emissions under California's Cap and Trade program.

Atrazine contamination in agricultural soils from the Yangtze River Delta of China and associated health risks.

PubMed

Sun, J T; Pan, L L; Zhan, Yu; Tsang, Daniel C W; Zhu, L Z; Li, X D

2017-04-01

Atrazine is one of the most widely applied and persistent herbicides in the world. In view of limited information on the regional contamination of atrazine in soils in China, this study investigated the spatial distribution and environmental impacts of atrazine in agricultural soils collected from the Yangtze River Delta (YRD) as an illustrative analysis of rapidly developing regions in the country. The results showed that the concentrations of atrazine in the YRD agricultural soils ranged from <1.0 to 113 ng/g dry weight, with a mean of 5.7 ng/g, and a detection rate of 57.7 % in soils. Pesticide factory might be a major source for the elevated levels of atrazine in Zhejiang Province. The contamination of atrazine was closely associated with land use types. The concentrations and detection rates of atrazine were higher in corn fields and mulberry fields than in rice paddy fields. There was no significant difference in compositions of soil microbial phospholipids fatty acids among the areas with different atrazine levels. Positive relationship (R = 0.417, p < 0.05, n = 30) was observed between atrazine and total microbial biomass. However, other factors, such as soil type and land management practice, might have stronger influences on soil microbial communities. Human health risks via exposure to atrazine in soils were estimated according to the methods recommended by the US EPA. Atrazine by itself in all the soil samples imposed very low carcinogenic risks (<10 -6 ) and minimal non-cancer risks (hazard index <1) to adults and children.

Lipid Biomarkers for a Hypersaline Microbial Mat Community

NASA Technical Reports Server (NTRS)

Jahnke, Linda; Orphan, Victoria; Embaye, Tsegereda; Turk, Kendra; Kubo, Mike; Summons, Roger

2004-01-01

The use of lipid biomarkers and their carbon isotopic compositions are valuable tools for establishing links to ancient microbial ecosystems. Various lipids associated with specific microbial groups can serve as biomarkers for establishing organism source and function in contemporary microbial ecosystems (membrane lipids), and by analogy, potential relevance to ancient organic-rich sedimentary rocks (geolipids). As witnessed by the stromatolite record, benthic microbial mats grew in shallow water lagoonal environments. Our recent work has focused on lipid biomarker analysis of a potential analogue for such ancient mats growing in a set of hypersaline evaporation ponds at Guerrero Negro, Baja California Sur, Mexico. The aerobic, surface layer of this mat (0 to 1 mm) contained a variety of ester-bound fatty acids (FA) representing a diverse bacterial population including cyanobacteria, sulphate reducers (SRB) and heterotrophs. Biomarkers for microeukaryotes detected in this layer included sterols, C-20 polyunsaturated FA and a highly branched isoprenoid, diagnostic for diatoms. Cyanobacteria were also indicated by the presence of a diagnostic set of mid-chain methylalkanes. C-28, to C-34 wax esters (WXE) present in relatively small amounts in the upper 3 mm of the mat are considered biomarkers for green non-sulphur bacteria. Ether-bound isoprenoids were also identified although in considerably lower abundance than ester-bound FA (approx. 1:l0). These complex ether lipids included archatol, hydroxyarchaeol and a C-40 tetraether, all in small amounts. After ether cleavage with boron tribromide, the major recovered isoprenyl was a C-30:1. This C(sub 30;1) yelded squalane after hydrogenation, a known geobiomarker for hypersaline environments in ancient oils and sediments. In this mat, it represents the dominant Archaeal population. The carbon isotopic composition of biomarker lipids were generally depleted relative to the bulk organic material (delta C-13 TOC -10%). Most depleted were the cyanobacterial methylalkanes at -27% with FA such as the SRB biomarker, 10- methyl C-I6, somewhat heavier at -16%, and WXE at -17%. The C-30:1 isoprenyl was most enriched with delta C-13 in the -7 to -11% range, much too heavy to represent the methanogen population responsible for mat methane values measured at -60%.

Carbon and Sulfur Isotopic Signatures of Ancient Life and Environment at the Microbial Scale: Neoarchean Shales and Carbonates

NASA Technical Reports Server (NTRS)

Williford, K. H.; Ushikubo, T.; Lepot, K.; Kitajima, K.; Hallmann, C.; Spicuzza, M. J.; Kozdon, R.; Eigenbrode, J. L.; Summons, R. E.; Valley, J. W.

2015-01-01

An approach to coordinated, spatially resolved, in situ carbon isotope analysis of organic matter and carbonate minerals, and sulfur three- and four-isotope analysis of pyrite with an unprecedented combination of spatial resolution, precision, and accuracy is described. Organic matter and pyrite from eleven rock samples of Neoarchean drill core express nearly the entire range of delta(sup 13)C, delta(sup 34)S, Delta(sup 33)S, and Delta(sup 36)S known from the geologic record, commonly in correlation with morphology, mineralogy, and elemental composition. A new analytical approach (including a set of organic calibration standards) to account for a strong correlation between H/C and instrumental bias in SIMS delta(sup 13)C measurement of organic matter is identified. Small (2-3 microns) organic domains in carbonate matrices are analyzed with sub-permil accuracy and precision. Separate 20- to 50-micron domains of kerogen in a single approx. 0.5 cu cm sample of the approx. 2.7 Ga Tumbiana Formation have delta(sup 13)C = -52.3 +/- 0.1per mille and -34.4 +/- 0.1per mille, likely preserving distinct signatures of methanotrophy and photoautotrophy. Pyrobitumen in the approx. 2.6 Ga Jeerinah Formation and the approx. 2.5 Ga Mount McRae Shale is systematically 13C-enriched relative to co-occurring kerogen, and associations with uraniferous mineral grains suggest radiolytic alteration. A large range in sulfur isotopic compositions (including higher Delta(sup 33)S and more extreme spatial gradients in Delta(sup 33)S and Delta(sup 36)S than any previously reported) are observed in correlation with morphology and associated mineralogy. Changing systematics of delta(sup 34)S, Delta(sup 33)S, and Delta(sup 36)S, previously investigated at the millimeter to centimeter scale using bulk analysis, are shown to occur at the micrometer scale of individual pyrite grains. These results support the emerging view that the dampened signature of mass-independent sulfur isotope fractionation (S-MIF) associated with the Mesoarchean continued into the early Neoarchean, and that the connections between methane and sulfur metabolism affected the production and preservation of S-MIF during the first half of the planet's history.

The Solar Rotation in the 1930s from the Sunspot and Flocculi Catalogs of the Ebro Observatory

NASA Astrophysics Data System (ADS)

de Paula, V.; Curto, J. J.; Casas, R.

2016-10-01

The tables of sunspot and flocculi heliographic positions included in the catalogs published by the Ebro Observatory in the 1930s have recently been recovered and converted into digital format by using optical character recognition (OCR) technology. We here analyzed these data by computing the angular velocity of several sunspot and flocculi groups. A difference was found in the rotational velocity for sunspots and flocculi groups at high latitudes, and we also detected an asymmetry between the northern and southern hemispheres, which is especially marked for the flocculi groups. The results were then fitted with a differential-rotation law [ω=a+b sin2 B] to compare the data obtained with the results published by other authors. A dependence on the latitude that is consistent with former studies was found. Finally, we studied the possible relationship between the sunspot/flocculi group areas and their corresponding angular velocity. There are strong indications that the rotational velocity of a sunspot/flocculi group is reduced (in relation to the differential rotation law) when its maximum area is larger.

Radar-based dynamic testing of the cable-suspended bridge crossing the Ebro River at Amposta, Spain

DOE Office of Scientific and Technical Information (OSTI.GOV)

Gentile, Carmelo; Luzi, Guido

2014-05-27

Microwave remote sensing is the most recent experimental methodology suitable to the non-contact measurement of deflections on large structures, in static or dynamic conditions. After a brief description of the radar measurement system, the paper addresses the application of microwave remote sensing to ambient vibration testing of a cable-suspended bridge. The investigated bridge crosses the Ebro River at Amposta, Spain and consists of two steel stiffening trusses and a series of equally spaced steel floor beams; the main span is supported by inclined stay cables and two series of 8 suspension cables. The dynamic tests were performed in operational conditions,more » with the sensor being placed in two different positions so that the response of both the steel deck and the arrays of suspension elements was measured. The experimental investigation confirms the simplicity of use of the radar and the accuracy of the results provided by the microwave remote sensing as well as the issues often met in the clear localization of measurement points.« less

Modeling circulation patterns induced by spatial cross-shore wind variability in a small-size coastal embayment

NASA Astrophysics Data System (ADS)

Cerralbo, Pablo; Espino, Manuel; Grifoll, Manel

2016-08-01

This contribution shows the importance of the cross-shore spatial wind variability in the water circulation in a small-sized micro-tidal bay. The hydrodynamic wind response at Alfacs Bay (Ebro River delta, NW Mediterranean Sea) is investigated with a numerical model (ROMS) supported by in situ observations. The wind variability observed in meteorological measurements is characterized with meteorological model (WRF) outputs. From the hydrodynamic simulations of the bay, the water circulation response is affected by the cross-shore wind variability, leading to water current structures not observed in the homogeneous-wind case. If the wind heterogeneity response is considered, the water exchange in the longitudinal direction increases significantly, reducing the water exchange time by around 20%. Wind resolutions half the size of the bay (in our case around 9 km) inhibit cross-shore wind variability, which significantly affects the resultant circulation pattern. The characteristic response is also investigated using idealized test cases. These results show how the wind curl contributes to the hydrodynamic response in shallow areas and promotes the exchange between the bay and the open sea. Negative wind curl is related to the formation of an anti-cyclonic gyre at the bay's mouth. Our results highlight the importance of considering appropriate wind resolution even in small-scale domains (such as bays or harbors) to characterize the hydrodynamics, with relevant implications in the water exchange time and the consequent water quality and ecological parameters.

Hydrogeologic controls on episodic H2 release from precambrian fractured rocks--energy for deep subsurface life on earth and mars.

PubMed

Sherwood Lollar, B; Voglesonger, K; Lin, L-H; Lacrampe-Couloume, G; Telling, J; Abrajano, T A; Onstott, T C; Pratt, L M

2007-12-01

Dissolved H(2) concentrations up to the mM range and H(2) levels up to 9-58% by volume in the free gas phase are reported for groundwaters at sites in the Precambrian shields of Canada and Finland. Along with previously reported dissolved H(2) concentrations up to 7.4 mM for groundwaters from the Witwatersrand Basin, South Africa, these findings indicate that deep Precambrian Shield fracture waters contain some of the highest levels of dissolved H(2) ever reported and represent a potentially important energy-rich environment for subsurface microbial life. The delta (2)H isotope signatures of H(2) gas from Canada, Finland, and South Africa are consistent with a range of H(2)-producing water-rock reactions, depending on the geologic setting, which include both serpentinization and radiolysis. In Canada and Finland, several of the sites are in Archean greenstone belts characterized by ultramafic rocks that have under-gone serpentinization and may be ancient analogues for serpentinite-hosted gases recently reported at the Lost City Hydrothermal Field and other hydrothermal seafloor deposits. The hydrogeologically isolated nature of these fracture-controlled groundwater systems provides a mechanism whereby the products of water-rock interaction accumulate over geologic timescales, which produces correlations between high H(2) levels, abiogenic hydrocarbon signatures, and the high salinities and highly altered delta (18)O and delta (2)H values of these groundwaters. A conceptual model is presented that demonstrates how periodic opening of fractures and resultant mixing control the distribution and supply of H(2) and support a microbial community of H(2)-utilizing sulfate reducers and methanogens.

Origin and evolution of Sariñena Lake (central Ebro Basin): A piping-based model

NASA Astrophysics Data System (ADS)

Castañeda, Carmen; Javier Gracia, F.; Rodríguez-Ochoa, Rafael; Zarroca, Mario; Roqué, Carles; Linares, Rogelio; Desir, Gloria

2017-08-01

The origin and nature of the numerous lakes in the central Ebro Basin have been interpreted according to the prevailing arid or semiarid conditions, the easily-eroded materials and the solubility of the gypsum- and/or carbonate-rich Tertiary/Cenozoic substratum, involving important dissolution (karstic) and/or aeolian deflation. However, the origin of Sariñena Lake, the largest in the central Ebro Basin, remains unknown since the typical lake-generating processes in the region are not applicable. This work provides significant clues to the genesis and evolution of Sariñena Lake in a regional context. The combination of geomorphological mapping and high resolution LiDAR data together with sedimentological observations, the characterisation of soils and sediments around the lake, and the application of high-resolution geophysical techniques suggest that piping is the major genetic process driving the evolution of the Sariñena depression and lake. Field evidence demonstrates that piping is, at present, the most important erosive process in the region, generating significant collapse and surface lowering. Sariñena Lake is located within a deep endorheic depression excavated from Na-rich Tertiary materials. This work hypothesises that once an early, fluvially-originated palustrine area had developed, the progressive lowering of the regional water table linked to regional fluvial incision favoured the establishment of a hydrological gradient high enough to trigger piping processes within the claystones and siltstones underlying the original palustrine area. The Quaternary evolution of the Sariñena lacustrine basin was then controlled by successive water table fluctuations, linked to different phases of incision and alluvial deposition in the surrounding fluvial systems. All the evidence supporting a piping-related origin for this lake, together with examples of lakes generated by similar processes in different contexts, is used to propose a new genetic type of lacustrine depression, generated by piping processes under favourable conditions.

Concentration and risk of pharmaceuticals in freshwater systems are related to the population density and the livestock units in Iberian Rivers.

PubMed

Osorio, Victoria; Larrañaga, Aitor; Aceña, Jaume; Pérez, Sandra; Barceló, Damià

2016-01-01

Considerable amounts of pharmaceuticals are used in human and veterinary medicine, which are not efficiently removed during wastewater and slurries treatment and subsequently entering continuously into freshwater systems. The intrinsic biological activity of these non-regulated pollutants turns their presence in the aquatic environment into an ecological matter of concern. We present the first quantitative study relating the presence of pharmaceuticals and their predicted ecotoxicological effects with human population and livestock units. Four representative Iberian River basins (Spain) were studied: Llobregat, Ebro, Júcar and Guadalquivir. The levels of pharmaceuticals were determined in surface water and sediment samples collected from 77 locations along their stream networks. Predicted total toxic units to algae, Daphnia and fish were estimated for pharmaceuticals detected in surface waters. The use of chemometrics enabled the study of pharmaceuticals for: their spatial distribution along the rivers in two consecutive years; their potential ecotoxicological risk to aquatic organisms; and the relationships among their occurrence and predicted ecotoxicity with human population and animal farming pressure. The Llobregat and the Ebro River basins were characterized as the most polluted and at highest ecotoxicological risk, followed by Júcar and Guadalquivir. No significant acute risks of pharmaceuticals to aquatic organisms were observed. However potential chronic ecotoxicological effects on algae could be expected at two hot spots of pharmaceuticals pollution identified in the Llobregat and Ebro basins. Analgesics/antiinflammatories, antibiotics and diuretics were the most relevant therapeutic groups across the four river basins. Among them, hydrochlorothiazide and gemfibrozil, as well as azithromycin and ibuprofen were widely spread and concentrated pharmaceuticals in surface waters and sediments, respectively. Regarding their predicted ecotoxicity, sertraline, gemfibrozil and loratidine were identified as the more concerning compounds. Significantly positive relationships were found among levels of pharmaceuticals and toxic units and population density and livestock units in both surface water and sediment matrices. Copyright © 2015. Published by Elsevier B.V.

Economic Drought Impact on Agriculture: analysis of all agricultural sectors affected

NASA Astrophysics Data System (ADS)

Gil, M.; Garrido, A.; Hernández-Mora, N.

2012-04-01

The analysis of drought impacts is essential to define efficient and sustainable management and mitigation. In this paper we present a detailed analysis of the impacts of the 2004-2008 drought in the agricultural sector in the Ebro river basin (Spain). An econometric model is applied in order to determine the magnitude of the economic loss attributable to water scarcity. Both the direct impacts of drought on agricultural productivity and the indirect impacts of drought on agricultural employment and agroindustry in the Ebro basin are evaluated. The econometric model measures losses in the economic value of irrigated and rainfed agricultural production, of agricultural employment and of Gross Value Added both from the agricultural sector and the agro-industrial sector. The explanatory variables include an index of water availability (reservoir storage levels for irrigated agriculture and accumulated rainfall for rainfed agriculture), a price index representative of the mix of crops grown in each region, and a time variable. The model allows for differentiating the impacts due to water scarcity from other sources of economic losses. Results show how the impacts diminish as we approach the macro-economic indicators from those directly dependent on water abstractions and precipitation. Sectors directly dependent on water are the most affected with identifiable economic losses resulting from the lack of water. From the management perspective implications of these findings are key to develop mitigation measures to reduce drought risk exposure. These results suggest that more open agricultural markets, and wider and more flexible procurement strategies of the agro-industry reduces the socio-economic exposure to drought cycles. This paper presents the results of research conducted under PREEMPT project (Policy relevant assessment of the socioeconomic effects of droughts and floods, ECHO - grant agreement # 070401/2010/579119/SUB/C4), which constitutes an effort to provide a comprehensive assessment of the socioeconomic impacts of the 2004-2008 drought in the Ebro river basin

Oxygen isotope ratios of PO4: an inorganic indicator of enzymatic activity and P metabolism and a new biomarker in the search for life.

PubMed

Blake, R E; Alt, J C; Martini, A M

2001-02-27

The distinctive relations between biological activity and isotopic effect recorded in biomarkers (e.g., carbon and sulfur isotope ratios) have allowed scientists to suggest that life originated on this planet nearly 3.8 billion years ago. The existence of life on other planets may be similarly identified by geochemical biomarkers, including the oxygen isotope ratio of phosphate (delta(18)O(p)) presented here. At low near-surface temperatures, the exchange of oxygen isotopes between phosphate and water requires enzymatic catalysis. Because enzymes are indicative of cellular activity, the demonstration of enzyme-catalyzed PO(4)-H(2)O exchange is indicative of the presence of life. Results of laboratory experiments are presented that clearly show that delta(18)O(P) values of inorganic phosphate can be used to detect enzymatic activity and microbial metabolism of phosphate. Applications of delta(18)O(p) as a biomarker are presented for two Earth environments relevant to the search for extraterrestrial life: a shallow groundwater reservoir and a marine hydrothermal vent system. With the development of in situ analytical techniques and future planned sample return strategies, delta(18)O(p) may provide an important biosignature of the presence of life in extraterrestrial systems such as that on Mars.

Fluidized muds: a novel setting for the generation of biosphere diversity through geologic time.

PubMed

Aller, J Y; Aller, R C; Kemp, P F; Chistoserdov, A Y; Madrid, V M

2010-06-01

Reworked and fluidized fine-grained deposits in energetic settings are a major modern-day feature of river deltas and estuaries. Similar environments were probably settings for microbial evolution on the early Earth. These sedimentary systems act as efficient biogeochemical reactors with high bacterial phylogenetic diversity and functional redundancy. They are temporally rather than spatially structured, with repeated cycling of redox conditions and successive stages of microbial metabolic processes. Intense reworking of the fluidized bed entrains bacteria from varied habitats providing new, diverse genetic materials to contribute to horizontal gene transfer events and the creation of new bacterial ecotypes. These vast mud environments may act as exporters and promoters of biosphere diversity and novel adaptations, potentially on a globally important scale.

Turbidity Current Head Mixing

NASA Astrophysics Data System (ADS)

Hernandez, David; Sanchez, Miguel Angel; Medina, Pablo

2010-05-01

A laboratory experimental set - up for studying the behaviour of sediment in presence of a turbulent field with zero mean flow is compared with the behaviour of turbidity currents [1] . Particular interest is shown on the initiation of sediment motion and in the sediment lift - off. The behaviour of the turbidity current in a flat ground is compared with the zero mean flow oscilating grid generated turbulence as when wave flow lifts off suspended sediments [2,3]. Some examples of the results obtained with this set-up relating the height of the head of the turbidity current to the equilibrium level of stirred lutoclines are shown. A turbulent velocity u' lower than that estimated by the Shield diagram is required to start sediment motion. The minimum u' required to start sediment lift - off, is a function of sediment size, cohesivity and resting time. The lutocline height depends on u', and the vorticity at the lutocline seems constant for a fixed sediment size [1,3]. Combining grid stirring and turbidty current head shapes analyzed by means of advanced image analysis, sediment vertical fluxes and settling speeds can be measured [4,5]. [1] D. Hernandez Turbulent structure of turbidity currents and sediment transport Ms Thesis ETSECCPB, UPC. Barcelona 2009. [2] A. Sánchez-Arcilla; A. Rodríguez; J.C. Santás; J.M. Redondo; V. Gracia; R. K'Osyan; S. Kuznetsov; C. Mösso. Delta'96 Surf-zone and nearshore measurements at the Ebro Delta. A: International Conference on Coastal Research through large Scale Experiments (Coastal Dynamics '97). University of Plymouth, 1997, p. 186-187. [3] P. Medina, M. A. Sánchez and J. M. Redondo. Grid stirred turbulence: applications to the initiation of sediment motion and lift-off studies Physics and Chemistry of the Earth, Part B: Hydrology, Oceans and Atmosphere. 26, Issue 4, 2001, Pages 299-304 [4] M.O. Bezerra, M. Diez, C. Medeiros, A. Rodriguez, E. Bahia., A. Sanchez-Arcilla and J.M. Redondo. Study on the influence of waves on coastal diffusion using image analysis. Applied Scientific Research 59,.191-204. 1998. [5] J.M. Redondo. Turbulent mixing in the Atmosphere and Ocean. Fluid Physics. 584-597. World Scientific. New York. 1994

Groundwater geochemistry and microbial community structure in the aquifer transition from volcanic to alluvial areas.

PubMed

Amalfitano, S; Del Bon, A; Zoppini, A; Ghergo, S; Fazi, S; Parrone, D; Casella, P; Stano, F; Preziosi, E

2014-11-15

Groundwaters may act as sinks or sources of organic and inorganic solutes, depending on the relative magnitude of biochemical mobilizing processes and groundwater-surface water exchanges. The objective of this study was to link the lithological and hydrogeological gradients to the aquatic microbial community structure in the transition from aquifer recharge (volcanic formations) to discharge areas (alluvial deposits). A field-scale analysis was performed along a water table aquifer in which volcanic products decreased in thickness and areal extension, while alluvial deposits became increasingly important. We measured the main groundwater physical parameters and the concentrations of major and trace elements. In addition, the microbial community structure was assessed by estimating the occurrence of total coliforms and Escherichia coli, the prokaryotic abundance, the cytometric and phylogenetic community composition. The overall biogeochemical asset differed along the aquifer flow path. The concentration of total and live prokaryotic cells significantly increased in alluvial waters, together with the percentages of Beta- and Delta-Proteobacteria. The microbial propagation over a theoretical groundwater travel time allowed for the identification of microbial groups shifting significantly in the transition between the two different hydrogeochemical facies. The microbial community structure was intimately associated with geochemical changes, thus it should be further considered in view of a better understanding of groundwater ecology and sustainable management strategies. Copyright © 2014 Elsevier Ltd. All rights reserved.

Effect of rottlerin, a PKC-{delta} inhibitor, on TLR-4-dependent activation of murine microglia

DOE Office of Scientific and Technical Information (OSTI.GOV)

Kim, Dong-Chan; Division of Research and Development, Neuronex, Inc., San31, Hyoja-dong, Nam-gu, Pohang 790-784; Kim, Sun-Hee

2005-11-11

In microglia, Toll-like receptors have been shown to recognize pathogen-associated molecular patterns and initiate innate immune responses upon interaction with infectious agents. The effect of rottlerin, a PKC-{delta} specific inhibitor, on TLR-4-mediated signaling was investigated in murine microglia stimulated with lipopolysaccharide and taxol. Pretreatment of microglia cells with rottlerin decreased LPS- and taxol-induced nitric oxide production in a concentration-dependent manner (IC{sub 50} = 99.1 {+-} 1.5 nM). Through MTT and FACS analysis, we found that the inhibition effect of rottlerin was not due to microglial cell death. Rottlerin pretreatment also attenuated LPS-induced phosphorylation of I{kappa}B-{alpha}, nuclear translocation of NF-{kappa}B, andmore » expression of type II nitric oxide synthase. In addition, microglial phagocytosis in response to TLR-4 activation was diminished in which rottlerin was pretreated. Together, these data raise the possibility that certain PKC-{delta} specific inhibitors can modulate TLR-4-derived signaling and inflammatory target gene expression, and can alter susceptibility to microbial infection and chronic inflammatory diseases in central nervous system.« less

Natural 13C abundance: a tool to trace the incorporation of dung-derived carbon into soil particle-size fractions.

PubMed

Amelung, W; Bol, R; Friedrich, C

1999-01-01

During the decay of 13C enriched dung patches, the; delta 13C signal of surface soil (1-5 cm) increased with a temporary maximum after 42 d. To understand the underlying processes, we investigated the incorporation of dung-derived C into soil particle-size fractions. Dung, collected from beef steers fed on maize (delta 13C = -15.36/1000) or ryegrass (delta 13C = -25.67/1000), was applied in circular patches to a C3 pasture at North Wyke, UK. Triplicates were sampled from surface soil (1-5 cm) at 14, 28, 42, and 70 d after application, pooled, separated into fine (< 0.2 micron) and coarse clay (0.2-2 microns), silt plus fine sand (2-250 microns), and coarse sand (250-2000 microns), and analyzed for total C, N, and delta 13C. As particle-size diameter decreased, the C/N ratios decreased and delta 13C values increased at all plots due to increasing microbial alteration of soil organic matter. After dung application, ca. 60% of dung-derived C in soil was recovered in the 0.2-250 microns fractions during the whole experiment. The proportion of dung-derived C in the fine clay peaked 42 d after dung application, coinciding with the delta 13C maximum in the bulk soil and the maximum leaching rate measured in lysimeters at this time in another study at the same sites. The percentage of dung-derived C as particulate C in the coarse sand fraction increased until the end of the experiment. We conclude that incorporation of C into soil from decomposing dung patches involved both temporary sorption of leached dung C to < 0.2 micron fractions and continuous accumulation of particulate C (> 250 microns).

Solar photolysis of soluble microbial products as precursors of disinfection by-products in surface water.

PubMed

Wu, Jie; Ye, Jian; Peng, Huanlong; Wu, Meirou; Shi, Weiwei; Liang, Yongmei; Liu, Wei

2018-06-01

In the Pearl River Delta area, the upstream municipal wastewater is commonly discharged into rivers which are a pivotal source of downstream drinking water. Solar irradiation transforms some of the dissolved organic matter discharged from the wastewater, also affecting the formation of disinfection by-products in subsequent drinking water treatment plants. The effect of simulated solar radiation on soluble microbial products extracted from activated sludge was documented in laboratory experiments. Irradiation was found to degrade macromolecules in the effluent, yielding smaller, more reactive intermediate species which reacted with chlorine or chloramine to form higher levels of noxious disinfection by-products. The soluble microbial products were found to be more active in formation of disinfection by-products regard than naturally-occurring organic matter. The results show that solar irradiation induced the formation of more trihalomethane (THMs), chloral hydrate (CH) and trichloronitromethane (TCNM), causing greater health risks for downstream drinking water. Copyright © 2018 Elsevier Ltd. All rights reserved.

76 FR 2115 - Granting of Request for Early Termination of the Waiting Period Under the Premerger Notification...

Federal Register 2010, 2011, 2012, 2013, 2014

2011-01-12

... US Oncology Holdings, Inc. 20110293 G Boston Scientific Corporation. G Sadra Medical, Inc. G Sadra... Capital Partners II, L.P. G Vantage Oncology, Inc. G Vantage Oncology, Inc. 20110358 G Vantage Oncology, Inc. G Oak Hill Capital Partners II, L.P. G Physician Oncology Services, LLC. 20110372 G Ebro Foods S...

Role of microbial Fe(III) reduction and solution chemistry in aggregation and settling of suspended particles in the Mississippi River Delta plain, Louisiana, USA

USGS Publications Warehouse

Jaisi, Deb P.; Ji, Shanshan; Dong, Hailiang; Blake, Ruth E.; Eberl, Dennis D.; Kim, Jinwook

2008-01-01

River-dominated delta areas are primary sites of active biogeochemical cycling, with productivity enhanced by terrestrial inputs of nutrients. Particle aggregation in these areas primarily controls the deposition of suspended particles, yet factors that control particle aggregation and resulting sedimentation in these environments are poorly understood. This study was designed to investigate the role of microbial Fe(III) reduction and solution chemistry in aggregation of suspended particles in the Mississippi Delta. Three representative sites along the salinity gradient were selected and sediments were collected from the sediment-water interface. Based on quantitative mineralogical analyses 88–89 wt.% of all minerals in the sediments are clays, mainly smectite and illite. Consumption of SO42− and the formation of H2S and pyrite during microbial Fe(III) reduction of the non-sterile sediments by Shewanella putrefaciens CN32 in artificial pore water (APW) media suggest simultaneous sulfate and Fe(III) reduction activity. The pHPZNPC of the sediments was ≤3.5 and their zeta potentials at the sediment-water interface pH (6.9–7.3) varied from −35 to −45 mV, suggesting that both edges and faces of clay particles have negative surface charge. Therefore, high concentrations of cations in pore water are expected to be a predominant factor in particle aggregation consistent with the Derjaguin-Landau-Verwey-Overbeek (DLVO) theory. Experiments on aggregation of different types of sediments in the same APW composition revealed that the sediment with low zeta potential had a high rate of aggregation. Similarly, addition of external Fe(II) (i.e. not derived from sediments) was normally found to enhance particle aggregation and deposition in all sediments, probably resulting from a decrease in surface potential of particles due to specific Fe(II) sorption. Scanning and transmission electron microscopy (SEM, TEM) images showed predominant face-to-face clay aggregation in native sediments and composite mixtures of biopolymer, bacteria, and clay minerals in the bioreduced sediments. However, a clear need remains for additional information on the conditions, if any, that favor the development of anoxia in deep- and bottom-water bodies supporting Fe(III) reduction and resulting in particle aggregation and sedimentation.

Shifts of tundra bacterial and archaeal communities along a permafrost thaw gradient in Alaska.

PubMed

Deng, Jie; Gu, Yunfu; Zhang, Jin; Xue, Kai; Qin, Yujia; Yuan, Mengting; Yin, Huaqun; He, Zhili; Wu, Liyou; Schuur, Edward A G; Tiedje, James M; Zhou, Jizhong

2015-01-01

Understanding the response of permafrost microbial communities to climate warming is crucial for evaluating ecosystem feedbacks to global change. This study investigated soil bacterial and archaeal communities by Illumina MiSeq sequencing of 16S rRNA gene amplicons across a permafrost thaw gradient at different depths in Alaska with thaw progression for over three decades. Over 4.6 million passing 16S rRNA gene sequences were obtained from a total of 97 samples, corresponding to 61 known classes and 470 genera. Soil depth and the associated soil physical-chemical properties had predominant impacts on the diversity and composition of the microbial communities. Both richness and evenness of the microbial communities decreased with soil depth. Acidobacteria, Verrucomicrobia, Alpha- and Gamma-Proteobacteria dominated the microbial communities in the upper horizon, whereas abundances of Bacteroidetes, Delta-Proteobacteria and Firmicutes increased towards deeper soils. Effects of thaw progression were absent in microbial communities in the near-surface organic soil, probably due to greater temperature variation. Thaw progression decreased the abundances of the majority of the associated taxa in the lower organic soil, but increased the abundances of those in the mineral soil, including groups potentially involved in recalcitrant C degradation (Actinomycetales, Chitinophaga, etc.). The changes in microbial communities may be related to altered soil C sources by thaw progression. Collectively, this study revealed different impacts of thaw in the organic and mineral horizons and suggests the importance of studying both the upper and deeper soils while evaluating microbial responses to permafrost thaw. © 2014 John Wiley & Sons Ltd.

Influence of deglaciation on microbial communities in marine sediments off the coast of Svalbard, Arctic Circle.

PubMed

Park, Soo-Je; Park, Byoung-Joon; Jung, Man-Young; Kim, So-Jeong; Chae, Jong-Chan; Roh, Yul; Forwick, Matthias; Yoon, Ho-Il; Rhee, Sung-Keun

2011-10-01

Increases in global temperatures have been shown to enhance glacier melting in the Arctic region. Here, we have evaluated the effects of meltwater runoff on the microbial communities of coastal marine sediment located along a transect of Temelfjorden, in Svalbard. As close to the glacier front, the sediment properties were clearly influenced by deglaciation. Denaturing gradient gel electrophoresis profiles showed that the sediment microbial communities of the stations of glacier front (stations 188-178) were distinguishable from that of outer fjord region (station 176). Canonical correspondence analysis indicated that total carbon and calcium carbonate in sediment and chlorophyll a in bottom water were key factors driving the change of microbial communities. Analysis of 16S rRNA gene clone libraries suggested that microbial diversity was higher within the glacier-proximal zone (station 188) directly affected by the runoffs than in the outer fjord region. While the crenarchaeotal group I.1a dominated at station 176 (62%), Marine Benthic Group-B and other Crenarchaeota groups were proportionally abundant. With regard to the bacterial community, alpha-Proteobacteria and Flavobacteria lineages prevailed (60%) at station 188, whereas delta-Proteobacteria (largely sulfate-reducers) predominated (32%) at station 176. Considering no clone sequences related to sulfate-reducers, station 188 may be more oxic compared to station 176. The distance-wise compositional variation in the microbial communities is attributable to their adaptations to the sediment environments which are differentially affected by melting glaciers.

Recent climate trends and multisecular climate variability: temperature and precipitation during the cold season (October-March) in the Ebro Basin (NE of Spain) betrween 1500 and 2008

NASA Astrophysics Data System (ADS)

Saz-Sanchez, M.-A.; Cuadrat-Prats, J.-M.

2009-09-01

One of the goals of Paleoclimatology is to assess the importance and the exceptional nature of recent climate trends related to the anthropogenic climate change. Instrumental data enable the analysis of last century's climate, but do not give any information on previous periods' precipitation and temperature, during which there was no anthropic intervention on the climate system. Dendroclimatology is one of the paleoclimatic reconstruction sources giving best results when it comes to reconstructing the climate of the time before instruments could be used. This work presents the reconstructed series of precipitation and temperature of the cold season (October-March) In the central sector of the Ebro Valley (NE of Spain). The chronologies used for the reconstruction come on the one hand from the International Tree-Ring Data Bank (ITRDB) and on the other hand from the dendrochronological information bank created in the northern half of the Iberian Peninsula within the framework of the Spanish Interministerial Commission for Science and Technology (CICYT) CLI96-1862 project. The climate data used for chronology calibration and the reconstruction of the temperature and precipitation values are those of the instrumental observatory number 9910 (Pallaruelo) belonging to the Spanish State Meteorological Agency (Agencia Estatal de Meteorología or AEMET), located in the central sector of the Ebro Valley. The reconstruction obtained covers the 1500-1990 period. In order to extend the series up to 2008, instrumental information has been used. Thanks to data from a set of AEMET instrumental observatories close to the one used for chronology calibration, a regional series of temperatures as well as a precipitation one were generated. The series reconstructed through dendroclimatic methods and the regional series do not show statistically significant differences in their mean and variance values. R values between both series exceed 0.85. Taking these statistical characteristics into account, with both series "hybrid series” of temperature and precipitation were created, in which the data reconstructed from 1955 on were replaced by those of the regional instrumental series. The resulting series were tested by means of the Standard Normal Homogeneity Test (SNHT) with the aim of assessing their homogeneity; the presence of inhomogeneities around the joining point between both series being undetected. The results stress the exceptional nature of the climate in the central sector of the Ebro Valley during the second half of the 20th century. The 1958-2007 period appears as the warmest since the 16th century, with an average temperature exceeding in 0.42 °C that of the reference 1850-1950 period. The two warmest decades take place from 1980 on. As for precipitations, they show a negative trend since the first third of the 20th century. The 1957-2006 period is the 50-year interval with the lowest average total precipitation, lower in 24.2 % to the reference period precipitation.

Hg soil pollution around the Flix chlor-alkali plant

NASA Astrophysics Data System (ADS)

Esbrí, José Maria; López-Berdoces, Miguel Angel; Martínez-Coronado, Alba; Fernández-Calderon, Sergio; Díez, Sergi; León Higueras, Pablo

2014-05-01

Main mercury consumer in industrialized countries is the chlor-alkali industry. In Spain, this industry declares 2.54 tons of mercury emissions to the atmosphere per year, but the losses of mercury in this industrial process seem to be higher than this. In the next 15 years, these industries are going to make a technology change to a free mercury based technology. This study has been applied to the Flix (Tarragona, NE Spain) plant, located very near the Ebro River. Local industrial activity started in the late 18th Century, being the first Spanish industrial precinct in activity. Technology used in this plant is obsolete, and produces important emissions to the atmosphere. Besides, it has also produced an important pollution problem in the Ebro River. The aim of this work is the characterization of mercury soil pollution around the oldest chlor-alkali plant (CAP), actually in process of decommissioning. For this porpoises, we provided data of mercury in soils and in olive oil leaves, in order to assess the extent of this pollution, and the consequences in terms of transferring to local agricultural biota. We present data from two soils geochemistry surveys, one centered in the general area, and a second one centered in an anomalous area identified by the first survey, at the Ebro margins downstream the town area. A total of 126 surface soil samples were taken and analyzed for total mercury by means of a Lumex RA-915+ device with RP- 91C pyrolysis attachment. Soil-plant transfer was studied based on mercury contents in olive leaves, the most ubiquitous plant species in the area; these biological samples were thoroughly clean and freeze-dried before its total mercury analysis in a Lumex RA-915+ device with its RP-91c pyrolysis attachment. Mercury contents in soils reach maximum levels in the vicinity of CAP (495 mg kg-1), much higher than baseline levels found in the area (0.18 mg kg-1, in average). These polluted soils are located near CAP and the riverbanks of Ebro meander, downstream the town area. Mercury seems to be partially available to plants, especially in the CAP surrounding area, where total mercury levels in olive leaves reach maximum values of 1.27 mg kg-1, and average concentration is 0.48 mg kg-1, higher than tolerable level for agronomic crops establish by Kabata-Pendias (2010) in 0.2 mg kg-1. Although correlation coefficients between Hgsoil-Hgplants are low, is possible to characterize plant absorption by logistic curves. Main conclusions of this work are: i) A fraction of mercury vapor emitted by CAP has been deposited on local soils by wet and dry deposition; ii) Mercury in local soils seems to be bioavailable for plants as highlights mercury levels in olive trees; iii) In this work we have identified risks areas with polluted soils.

Presence and impact of Stockholm Convention POPs in gull eggs from Spanish and Portuguese natural and national parks.

PubMed

Zapata, Pablo; Ballesteros-Cano, Rubèn; Colomer, Pere; Bertolero, Albert; Viana, Paula; Lacorte, Silvia; Santos, Francisco Javier

2018-08-15

The aim of the present work was to comparatively assess the occurrence and impact of persistent organic pollutants (POPs) in nine natural and national parks from Spain and Portugal using gull eggs (Larus michahellis and L. audouinii) as bioindicators of environmental contamination. Sampling was performed during the breeding season of 2016. Compounds studied include polychlorinated biphenyls (PCBs), organochlorinated pesticides (OC pesticides), perfluorooctane sulfonic acid (PFOS) and polybrominated diphenyl ethers (PBDEs), and were analyzed using mass spectrometric based techniques. The results showed a high contamination by PCBs in all colonies, with total levels ranging from 59 to 1278ng/g wet weight (ww), despite their use is not currently authorized. OC pesticides were also present in all colonies, with a high incidence of 4,4'-DDE in gull eggs at levels up to 218±50ng/g ww in L. michahellis and 760±412ng/g ww in L. audouinii from the Ebro Delta natural park. PBDEs and PFOS were also detected at levels up to 91.7±21.3ng/g ww, which can be attributed to a more recent use. Except for PBDEs, the POP levels in eggs from L. audouinii were higher than in L. michahellis, presumably associated to the fish-based diet of the former. Finally, the effect of POP levels on eggshell parameters (volume, eggshell thickness and desiccation index) were investigated for each colony and gull species in order to evaluate the egg viability and, therefore, the reproduction success. Copyright © 2018 Elsevier B.V. All rights reserved.

Linking Nitrogen-Cycling Microbial Communities to Environmental Fluctuations and Biogeochemical Activity in a Large, Urban Estuary: the San Francisco Bay-Delta

NASA Astrophysics Data System (ADS)

Francis, C.

2015-12-01

Nitrogen (N) availability is an important factor controlling productivity and thus carbon cycling in estuaries. The fate of N in estuaries depends on the activities of the microbes that carry out the N-cycle, which in turn depend on factors such as organic matter availability, dissolved inorganic N, salinity, oxygen, and temperature. Key microbial N transformations include nitrification (the aerobic oxidation of ammonia to nitrite and nitrate) and denitrification (the anaerobic reduction of nitrate to dinitrogen gas). While denitrification leads to N loss, nitrification is the only link between reduced N (produced by decomposition) and oxidized N (substrates for N loss processes), and both processes are known to produce nitrous oxide (N2O), a potent greenhouse gas. Understanding controls of N-cycling in the San Francisco Bay-Delta (SFBD)—the largest estuary on the west coast of North America—is particularly important, as this urban estuary is massively polluted with N, even compared to classic "eutrophic" systems. Interestingly, the SFBD has been spared the detrimental consequences of nutrient enrichment, largely due to high suspended sediment concentrations (and thus low light penetration) throughout the water column, combined with high grazing pressure. However, the recent "clearing" of SFBD waters due to a sharp decrease in suspended sediments may significantly alter the ecology of the estuary, by increasing phytoplankton growth. Thus, the SFBD may be losing its historical resilience to eutrophication, and may soon be "high-nutrient, low-chlorophyll" no more. Elucidating the environmental factors affecting the community structure, activity, and functioning of N-cycling microbes in SFBD is crucial for determining how changes in turbidity and productivity will be propagated throughout the ecosystem. While substantial ecological research in the SFBD has focused on phytoplankton and food webs, bacterial and archaeal communities have received far less attention. Using a combination of molecular, biogeochemical, and 'omics' approaches, we have been examining how N-cycling microbial communities throughout the SFBD change in relation to environmental fluctuations—a critical step in understanding how microbial populations drive biogeochemical cycling in this estuary.

The Dinner Menu: Spatial Distribution of Organic Carbon Composition Across the San Francisco Bay-Delta

NASA Astrophysics Data System (ADS)

Harfmann, J.; Hernes, P.; Bergamaschi, B. A.

2016-12-01

The San Francisco Bay-Delta is a dynamic tidal system with multiple sources of carbon, both autochthonous (e.g. phytoplankton, submersed or floating aquatic vegetation, or non-phytoplankton microalgae) and allochthonous (e.g. riverine detritus, agricultural drainage, and urban runoff). Spatial variability in organic carbon (OC) sources translates into varying degrees of food quantity and quality for the aquatic food web, and yet surprisingly little is known about the implications of carbon source variability on the health of zooplankton populations, which form the base of the lower food chain. Particulate organic carbon (POC) is a critical component of zooplankton diet, and with the assistance of the microbial loop, dissolved organic carbon (DOC) may supplement their food. As part of a larger study linking OC sources with zooplankton growth, we collected water samples along a transect from San Pablo Bay to the Sacramento-San Joaquin Delta. Samples were analyzed for bulk POC and DOC, lignin, chlorophyll a, δ13C, and δ15N. Feeding experiments with the calanoid copepod Eurytemora affinis will be conducted in order to assess the relative bioavailability of collected OC across the transect.

Preliminary Results on TID (Travelling Ionospheric Disturbances) over Ebro from TEC Data.

DTIC Science & Technology

1982-10-30

auroral zone during magnetio substOrms (Chimonas and Etnes,1970, Testud , 1970, Titheridge,1971) while several causes have been poin-ted out for the...88 62 Testud , J.. 1970 Jro.At.Terr.,A202,32087 Mutnri, .. 1971 Jus.GoPhys.esL1,6915 TOkuao,I., .Om andLle195JAmerPhs,715 0. tsui .ad .g 19J73

"Science to the Glory of God". The Popular Science Magazine "Iberica" and Its Coverage of Radioactivity, 1914-1936

ERIC Educational Resources Information Center

Herran, Nestor

2012-01-01

This paper provides a first approach to the history of "Iberica," one of the most important popular science magazines published in Spain before the Civil War. Founded in 1914 by members of the Society of Jesus based at the Ebro Observatory, "Iberica" reached a weekly circulation of about 10,000 in the mid 1920s, and was…

Interactive effects of wildfire and permafrost on microbial communities and soil processes in an Alaskan black spruce forest

USGS Publications Warehouse

Waldrop, M.P.; Harden, J.W.

2008-01-01

Boreal forests contain significant quantities of soil carbon that may be oxidized to CO2 given future increases in climate warming and wildfire behavior. At the ecosystem scale, decomposition and heterotrophic respiration are strongly controlled by temperature and moisture, but we questioned whether changes in microbial biomass, activity, or community structure induced by fire might also affect these processes. We particularly wanted to understand whether postfire reductions in microbial biomass could affect rates of decomposition. Additionally, we compared the short-term effects of wildfire to the long-term effects of climate warming and permafrost decline. We compared soil microbial communities between control and recently burned soils that were located in areas with and without permafrost near Delta Junction, AK. In addition to soil physical variables, we quantified changes in microbial biomass, fungal biomass, fungal community composition, and C cycling processes (phenol oxidase enzyme activity, lignin decomposition, and microbial respiration). Five years following fire, organic surface horizons had lower microbial biomass, fungal biomass, and dissolved organic carbon (DOC) concentrations compared with control soils. Reductions in soil fungi were associated with reductions in phenol oxidase activity and lignin decomposition. Effects of wildfire on microbial biomass and activity in the mineral soil were minor. Microbial community composition was affected by wildfire, but the effect was greater in nonpermafrost soils. Although the presence of permafrost increased soil moisture contents, effects on microbial biomass and activity were limited to mineral soils that showed lower fungal biomass but higher activity compared with soils without permafrost. Fungal abundance and moisture were strong predictors of phenol oxidase enzyme activity in soil. Phenol oxidase enzyme activity, in turn, was linearly related to both 13C lignin decomposition and microbial respiration in incubation studies. Taken together, these results indicate that reductions in fungal biomass in postfire soils and lower soil moisture in nonpermafrost soils reduced the potential of soil heterotrophs to decompose soil carbon. Although in the field increased rates of microbial respiration can be observed in postfire soils due to warmer soil conditions, reductions in fungal biomass and activity may limit rates of decomposition. ?? 2008 The Authors Journal compilation ?? 2008 Blackwell Publishing.

Temporal changes in fluid chemistry and energy profiles in the vulcano island hydrothermal system.

PubMed

Rogers, Karyn L; Amend, Jan P; Gurrieri, Sergio

2007-12-01

In June 2003, the geochemical composition of geothermal fluids was determined at 9 sites in the Vulcano hydrothermal system, including sediment seeps, geothermal wells, and submarine vents. Compositional data were combined with standard state reaction properties to determine the overall Gibbs free energy (DeltaG(r) ) for 120 potential lithotrophic and heterotrophic reactions. Lithotrophic reactions in the H-O-N-S-C-Fe system were considered, and exergonic reactions yielded up to 120 kJ per mole of electrons transferred. The potential for heterotrophy was characterized by energy yields from the complete oxidation of 6 carboxylic acids- formic, acetic, propanoic, lactic, pyruvic, and succinic-with the following redox pairs: O(2)/H(2)O, SO(4) (2)/H(2)S, NO(3) ()/NH(4) (+), S(0)/H(2)S, and Fe(3)O(4)/Fe(2+). Heterotrophic reactions yielded 6-111 kJ/mol e(). Energy yields from both lithotrophic and heterotrophic reactions were highly dependent on the terminal electron acceptor (TEA); reactions with O(2) yielded the most energy, followed by those with NO(3) (), Fe(III), SO(4) (2), and S(0). When only reactions with complete TEA reduction were included, the exergonic lithotrophic reactions followed a similar electron tower. Spatial variability in DeltaG(r) was significant for iron redox reactions, owing largely to the wide range in Fe(2+) and H(+) concentrations. Energy yields were compared to those obtained for samples collected in June 2001. The temporal variations in geochemical composition and energy yields observed in the Vulcano hydrothermal system between 2001 and 2003 were moderate. The largest differences in DeltaG(r) over the 2 years were from iron redox reactions, due to temporal changes in the Fe(2+) and H(+) concentrations. The observed variations in fluid composition across the Vulcano hydrothermal system have the potential to influence not only microbial diversity but also the metabolic strategies of the resident microbial communities.

Wetlands, Microbes, and the Carbon Cycle: Behind the Scenes @ Berkeley Lab

ScienceCinema

Tringe, Susannah

2018-02-14

Susannah Tringe, who leads the Metagenome Program at the Department of Energy's Joint Genome Institute (JGI), a collaboration in which Berkeley Lab plays a leading role, takes us behind the scenes to show how DNA from unknown wild microbes is extracted and analyzed to see what role they play in the carbon cycle. Tringe collects samples of microbial communities living in the wetland muck of the Sacramento-San Joaquin River Delta, organisms that can determine how these wetlands store or release carbon.

Spatial and temporal dynamics of microbial communities in a human-perturbed estuary of China

NASA Astrophysics Data System (ADS)

Hu, A.; Yu, C. P.; Hou, L.

2015-12-01

Estuaries are responsible for the transport and transformation of nutrients and organic matters from the continent to the adjacent coastal zone, and therefore play critical roles in global biogeochemical cycles. They are under increasing stress from human activities, especially in China, yet we still know little about the responses of microbial communities that mediate biogeochemical processes. Here, we investigated planktonic and benthic microbial communities in the human-perturbed Jiulong River estuary (JRE), southern China by using Illumina 16S ribosomal RNA amplicon sequencing. The results of taxonomic assignments indicated that Beta- (23.32%), Alpha- (22.21%), Gammaproteobacteria (14.83%), Actinobacteria (8.67%), and Flavobacteria (7.56%) were the five most abundant classes in estuarine surface waters, while benthic microbial communities were dominated by Gamma- (20.09%), Delta- (14.68%), Beta- (9.82%), Alphaproteobacteria (7.63%), and Anaerolineae (7.25%). The results of Adnois and ANOSIM tests confirmed that the compositions of microbial communities from waters and sediments of the JRE were significantly different from each other, and then salinity may be the primary factor controlling spatial distributions of planktonic and benthic microbial communities in this estuary. At the temporal scale, planktonic communities showed a more clear variation pattern. Remarkably, the ratios of Thaumarchaeota (putative ammonia-oxidizing archaea) to Nitrosomonadales (ammonia-oxidizing bacteria) either in water or sediments of the JRE increased from freshwater to marine end, suggesting that bacterial and archaeal nitrifiers occupy low-salinity and high-salinity niches, respectively. The nutrient concentrations and salinity might be the most important factors which are responsible for this niche diversification. Overall, this study shed light on our understanding of the biogeographic patterns and its ecological drivers of estuarine microbial communities.

Microbial Communities Model Parameter Calculation for TSPA/SR

DOE Office of Scientific and Technical Information (OSTI.GOV)

D. Jolley

2001-07-16

This calculation has several purposes. First the calculation reduces the information contained in ''Committed Materials in Repository Drifts'' (BSC 2001a) to useable parameters required as input to MING V1.O (CRWMS M&O 1998, CSCI 30018 V1.O) for calculation of the effects of potential in-drift microbial communities as part of the microbial communities model. The calculation is intended to replace the parameters found in Attachment II of the current In-Drift Microbial Communities Model revision (CRWMS M&O 2000c) with the exception of Section 11-5.3. Second, this calculation provides the information necessary to supercede the following DTN: M09909SPAMING1.003 and replace it with a newmore » qualified dataset (see Table 6.2-1). The purpose of this calculation is to create the revised qualified parameter input for MING that will allow {Delta}G (Gibbs Free Energy) to be corrected for long-term changes to the temperature of the near-field environment. Calculated herein are the quadratic or second order regression relationships that are used in the energy limiting calculations to potential growth of microbial communities in the in-drift geochemical environment. Third, the calculation performs an impact review of a new DTN: M00012MAJIONIS.000 that is intended to replace the currently cited DTN: GS9809083 12322.008 for water chemistry data used in the current ''In-Drift Microbial Communities Model'' revision (CRWMS M&O 2000c). Finally, the calculation updates the material lifetimes reported on Table 32 in section 6.5.2.3 of the ''In-Drift Microbial Communities'' AMR (CRWMS M&O 2000c) based on the inputs reported in BSC (2001a). Changes include adding new specified materials and updating old materials information that has changed.« less

Microbial Diversity in Deep-sea Methane Seep Sediments Presented by SSU rRNA Gene Tag Sequencing

PubMed Central

Nunoura, Takuro; Takaki, Yoshihiro; Kazama, Hiromi; Hirai, Miho; Ashi, Juichiro; Imachi, Hiroyuki; Takai, Ken

2012-01-01

Microbial community structures in methane seep sediments in the Nankai Trough were analyzed by tag-sequencing analysis for the small subunit (SSU) rRNA gene using a newly developed primer set. The dominant members of Archaea were Deep-sea Hydrothermal Vent Euryarchaeotic Group 6 (DHVEG 6), Marine Group I (MGI) and Deep Sea Archaeal Group (DSAG), and those in Bacteria were Alpha-, Gamma-, Delta- and Epsilonproteobacteria, Chloroflexi, Bacteroidetes, Planctomycetes and Acidobacteria. Diversity and richness were examined by 8,709 and 7,690 tag-sequences from sediments at 5 and 25 cm below the seafloor (cmbsf), respectively. The estimated diversity and richness in the methane seep sediment are as high as those in soil and deep-sea hydrothermal environments, although the tag-sequences obtained in this study were not sufficient to show whole microbial diversity in this analysis. We also compared the diversity and richness of each taxon/division between the sediments from the two depths, and found that the diversity and richness of some taxa/divisions varied significantly along with the depth. PMID:22510646

Short-time effect of heavy metals upon microbial community activity.

PubMed

Wang, Fei; Yao, Jun; Si, Yang; Chen, Huilun; Russel, Mohammad; Chen, Ke; Qian, Yiguang; Zaray, Gyula; Bramanti, Emilia

2010-01-15

Microcalorimetry was applied to assess and compare the toxic effect of heavy metals, such as As, Cu, Cd, Cr, Co, Pb and Zn, on the soil microbial activities and community. About 1.0 g soil spiked 5.0mg glucose and 5.0mg ammonium sulfate, the microbial activities were recorded as power-time curves, and their indices, microbial growth rate constant k, total heat evolution Q(T), metabolic enthalpy Delta H(met) and mass specific heat rate J(Q/S), were calculated. Comparing these thermodynamic parameters associated with growth yield, a general order of toxicity to the soil was found to be Cr>Pb>As>Co>Zn>Cd>Cu. When soil was exposed to heavy metals, the amount of bacteria and fungi decreased with the incubation time, and the bacterial number diminished sharply. It illustrates that fungi are more tolerant, and bacteria-fungi ratio would be altered under metal stress. To determine the status of the glucose consumed, a glucose biosensor with eggshell membrane was used to measure the remaining glucose in soil sample. Results showed that the time at which glucose was consumed completely was agreed with the microcalorimetric time to a large extent, and depended on the toxicity of heavy metals as well.

Assessment of priority pesticides, degradation products, and pesticide adjuvants in groundwaters and top soils from agricultural areas of the Ebro river basin.

PubMed

Hildebrandt, Alain; Lacorte, Sílvia; Barceló, Damià

2007-02-01

Gas chromatography-mass spectrometry (GC/MS) was employed for the determination of 30 widely used pesticides including various transformation products and alkylphenols in water and agricultural soils with the aim of assessing the impact of these compounds in agricultural soils and the underlying aquifer. The extraction, clean-up, and analytical procedures were optimized for both water and soil samples to provide a highly robust method capable of determining target analytes at the ppb-ppt level with high precision. For water samples, different solid-phase extraction cartridges and conditions were optimized; similarly, pressurized liquid extraction conditions were tested to provide interference-free extracts and high sensitivity. Instrumental LODs of 3-4 pg were obtained. The multi-residue extraction procedures were applied to the analysis of groundwaters and agricultural soils from the Ebro river basin (NE Spain). Most ubiquitous herbicides detected were triazines but some acetanilides and organophosphorus pesticides were also found; the pesticide additive tributylphosphate was found in all water samples. Levels varied between 0.57 and 5.37 microg/L in groundwater, whereas nonylphenol was the sole compound detected in soil. Alkylphenols are used as adjuvants in pesticide formulations and are present in sludges employed as soil fertilizers. Occurrence was found to be similar to other environmental studies.

Sea floor morphology of the Ebro Shelf in the region of the Columbretes Islands, Western Mediterranean

NASA Astrophysics Data System (ADS)

Muñoz, A.; Lastras, G.; Ballesteros, M.; Canals, M.; Acosta, J.; Uchupi, E.

2005-12-01

Widespread volcanism off eastern Spain in the western Mediterranean is associated with Cenozoic crustal attenuation and sinistral motion along the Trans-Moroccan-Western Mediterranean-European mega shear, extending from northern Morocco to the North Sea via the Alboran Basin, eastern Iberia, the Valencian and Lyons basins, France and Germany. The Quaternary Columbretes Islands volcanic field is the most prominent example of this volcanism associated with this mega shear. The islands are located in the Ebro continental shelf on top of a structural horst probably made of Paleozoic metamorphic rocks. Surrounding the emerged islands are volcanic structures and associated flows partially mantled by a sediment drift whose morphology is controlled by the southwestward flowing Catalan Current. This association is rather unique and appears to have never been described from a continental shelf in the Mediterranean Sea or outside the sea. The morphology of both kinds of structures, obtained by means of swath bathymetry data and very-high resolution seismic profiles, is presented in this study. They provide striking images of this previously unstudied part of the western Mediterranean seafloor. These images suggest that the volcanic structures are intruded into the surficial Holocene sediments indicating that volcanism in the Columbretes has extended into Holocene.

Reactivity and mobilization of permafrost-derived organic matter along the Lena River Delta - Laptev Sea transition

NASA Astrophysics Data System (ADS)

Koch, Boris P.; Dubinenkov, Ivan; Flerus, Ruth; Schmitt-Kopplin, Philippe; Kattner, Gerhard

2015-04-01

The impact of global warming on organic carbon budgets in permafrost systems are not well constrained. Changes in organic carbon fluxes caused by permafrost thaw depend on microbial activity, coastal erosion, mobilization of organic matter by increased porewater fluxes, and the inherent chemical stability of organic matter in permafrost soils. Here we aim at the identification and molecular characterization of active and inactive dissolved organic matter (DOM) components within the river-ocean transition. We studied four transects in the coastal Laptev Sea characterized by steep physico-chemical gradients. Molecular information on solid-phase extracted DOM was derived from ultrahigh resolution mass spectrometry. Changes of the chemical composition with salinity were used as a measure for DOM reactivity. Although changes of dissolved organic carbon (DOC) in the estuary suggested conservative mixing, only 27% of the identified molecular formulas behaved conservatively, 32% were moderately affected, and 41% were actively involved in estuarine processes. The molecular complexity in the DOM samples increased with growing marine influence and the average elemental composition (i.e. relative contribution of organic nitrogen and oxygen compounds) changed significantly with increasing salinity. These chemical changes were consistent with the results of a 20-day microbial incubation experiment, during which more than half of the permafrost-derived DOC was mineralized. We conclude that, although the DOC gradient in the estuary suggests conservative behavior, terrestrial DOM is substantially affected by estuarine processes which in turn also impact organic carbon budgets in the Lena Delta.

Hydrologically Controlled Arsenic Release in Deltaic Wetlands and Coastal Riparian Zones

NASA Astrophysics Data System (ADS)

Stuckey, J.; LeMonte, J. J.; Yu, X.; Schaefer, M.; Kocar, B. D.; Benner, S. G.; Rinklebe, J.; Tappero, R.; Michael, H. A.; Fendorf, S. E.; Sparks, D. L.

2016-12-01

Wetland and riparian zone hydrology exerts critical controls on the biogeochemical cycling of metal contaminants including arsenic. The role of wetlands in driving geogenic arsenic release to groundwater has been debated in the deltas of South and Southeast Asia where the largest impacted human population resides. In addition, groundwater in coastal areas worldwide, such as those in South and Southeast Asia and the Mid-Atlantic of the U.S., is at risk to largely unexplored biogeochemical and hydrologic impacts of projected sea level rise. First, we present data from fresh-sediment incubations, in situ model sediment incubations and a controlled field experiment with manipulated wetland hydrology and organic carbon inputs in the minimally disturbed upper Mekong Delta. Here we show that arsenic release is limited to near-surface sediments of permanently saturated wetlands where both organic carbon and arsenic-bearing solids are sufficiently reactive for microbial oxidation of organic carbon and reduction of arsenic-bearing iron oxides. In contrast, within the deeper aquifer or seasonally saturated sediments, reductive dissolution of iron oxides is observed only when either more reactive exogenous forms of iron oxides or organic carbon are added, revealing a potential thermodynamic restriction to microbial metabolism. Second, in order to assess the potential impacts of sea level rise on arsenic release to groundwater, we determined the changes in arsenic speciation and partitioning in sediment collected from an anthropogenically contaminated coastal riparian zone under controlled Eh regimes in both seawater and freshwater systems. Here we show greater arsenic release under anoxic/suboxic conditions in the freshwater system than in the seawater system, potentially due to high salinity induced microbial inhibition. Collectively, our work shows that shifting hydrologic conditions in deltaic wetlands and tidally influenced zones impacts the extent of arsenic release to groundwater. Land and water management decisions that increase the duration of wetland inundation may promote arsenic release to groundwater.

Differential responses of soil microbial biomass, diversity, and compositions to altitudinal gradients depend on plant and soil characteristics.

PubMed

Ren, Chengjie; Zhang, Wei; Zhong, ZeKun; Han, Xinhui; Yang, Gaihe; Feng, Yongzhong; Ren, Guangxin

2018-01-01

Alt'itudinal gradients strongly affect plant biodiversity, but the effects on microbial patterns remain unclear, especially in the large scale. We therefore designed an altitudinal gradient experiment that covered three climate zones to monitor soil microbial community dynamics and to compare those with plant and soil characteristics. Illumina sequencing of the 16S rRNA gene and ITS gene was used to analyze soil microbial (bacterial and fungal) diversity and composition, and fumigation-extraction was used to determine microbial biomass; the plant community metrics (i.e., percent cover, Shannon-Wiener, grass biomass, and carbon/nitrogen in leaf and biomass) and soil properties (i.e., soil moisture, soil temperature, bulk density, organic carbon, total nitrogen, and available nitrogen) were determined. The results showed that carbon/nitrogen in microbial biomass was higher at medium altitude and was positively related to carbon and nitrogen in both soil and grass biomass along the altitudinal gradients. Soil bacterial alpha diversity was significantly higher at medium altitude but fungal alpha diversity did not affected by altitudinal gradients; the effect of altitudinal gradients on bacterial beta diversity was larger than that on fungal beta diversity, although both groups were significantly affected by altitudinal gradients. Moreover, Alpha-proteobacteria, Beta-proteobacteria, and Gemmatimonadetes were significantly more abundant in higher altitude than in lower altitude, both Acidobacteria and Actinobacteria significantly declined with increasing altitude; other bacterial taxa such as Chloroflexi, Nitrospirae, Gamma-proteobacteria, and Delta-proteobacteria were significantly higher at medium altitudes. For fungal taxa, Basidiomycota and Ascomycota were the dominant phyla and responded insignificantly to the altitudinal gradients. The responses of microbial alpha diversity were mostly associated with plant Shannon index, organic carbon, and total nitrogen, whereas microbial beta diversity and composition mainly depended on soil moisture and temperature. Overall, these results suggest that soil bacteria rather than fungi can reflect changes in plant and soil characteristics along altitudinal gradients. Copyright © 2017 Elsevier B.V. All rights reserved.

Bacterial and archaeal symbionts in the South China Sea sponge Phakellia fusca: community structure, relative abundance, and ammonia-oxidizing populations.

PubMed

Han, Minqi; Liu, Fang; Zhang, Fengli; Li, Zhiyong; Lin, Houwen

2012-12-01

Many biologically active natural products have been isolated from Phakellia fusca, an indigenous sponge in the South China Sea; however, the microbial symbionts of Phakellia fusca remain unknown. The present investigations on sponge microbial community are mainly based on qualitative analysis, while quantitative analysis, e.g., relative abundance, is rarely carried out, and little is known about the roles of microbial symbionts. In this study, the community structure and relative abundance of bacteria, actinobacteria, and archaea associated with Phakellia fusca were revealed by 16S rRNA gene library-based sequencing and quantitative real time PCR (qRT-PCR). The ammonia-oxidizing populations were investigated based on amoA gene and anammox-specific 16S rRNA gene libraries. As a result, it was found that bacterial symbionts of sponge Phakellia fusca consist of Proteobacteria including Gamma-, Alpha-, and Delta-proteobacteria, Cyanobacteria with Gamma-proteobacteria as the predominant components. In particular, the diversity of actinobacterial symbionts in Phakellia fusca is high, which is composed of Corynebacterineae, Acidimicrobidae, Frankineae, Micrococcineae, and Streptosporangineae. All the observed archaea in sponge Phakellia fusca belong to Crenarchaeota, and the detected ammonia-oxidizing populations are ammonia-oxidizing archaea, suggesting the nitrification function of sponge archaeal symbionts. According to qRT-PCR analysis, bacterial symbionts dominated the microbial community, while archaea represented the second predominant symbionts, followed by actinobacteria. The revealed diverse prokaryotic symbionts of Phakellia fusca are valuable for the understanding and in-depth utilization of Phakellia fusca microbial symbionts. This study extends our knowledge of the community, especially the relative abundance of microbial symbionts in sponges.

Modelling Terrestrial and Marine Foraging Habitats in Breeding Audouin's Gulls Larus audouinii: Timing Matters

PubMed Central

Bécares, Juan; García-Tarrasón, Manuel; Villero, Dani; Bateman, Santiago; Jover, Lluís; García-Matarranz, Víctor; Sanpera, Carolina; Arcos, José Manuel

2015-01-01

Although the breeding ecology of Audouin’s gull has been widely studied, its spatial distribution patterns have received little attention. We assessed the foraging movements of 36 GPS-tracked adult Audouin’s gulls breeding at the Ebro Delta (NW Mediterranean), coinciding with the incubation period (May 2011). This also coincided with a trawling moratorium northwards from the colony. We modelled the distribution of the gulls by combining these tracking data with environmental variables (including fishing activities from Vessel Monitoring System, VMS), using Maxent. The modelling range included both marine and terrestrial areas. Models were produced separately for every 2h time interval across the day, and for 2 fishing activity scenarios (workdays vs. weekends), allowing to assess the spatio-temporal distribution patterns of the gulls and the degree of association with fisheries. During workdays, gull distribution at sea fully matched with fishing activities, both trawling (daylight) and purse-seining (nightime). Gulls tended to avoid the area under trawling moratorium, confirming the high influence of fisheries on the distribution patterns of this species. On weekends, gulls made lesser use of the sea and tended to increase the use of rice fields. Overall, Audouin’s gull activity was more intense during dailight hours, although birds also showed nocturnal activity, on both workdays and weekends. Nocturnal patterns at sea were more disperse during the latter, probably because these gulls are able to capture small pelagic fish at night in natural conditions, but tend to congregate around purse-seiners (which would enhance their foraging efficiency) in workdays. These results provide important insight for the management of this species. This is of particular relevance under the current scenario of European fisheries policies, since new regulations are aimed at eliminating discards, and this would likely influence Audouin’s gull populations. PMID:25875597

Observation of Wetland Dynamics with Global Navigation Satellite Signals Reflectometry

NASA Astrophysics Data System (ADS)

Zuffada, C.; Shah, R.; Nghiem, S. V.; Cardellach, E.; Chew, C. C.

2015-12-01

Wetland dynamics is crucial to changes in both atmospheric methane and terrestrial water storage. The Intergovernmental Panel on Climate Change's Fifth Assessment Report (IPCC AR5) highlights the role of wetlands as a key driver of methane (CH4) emission, which is more than one order of magnitude stronger than carbon dioxide as a greenhouse gas in the centennial time scale. Among the multitude of methane emission sources (hydrates, livestock, rice cultivation, freshwaters, landfills and waste, fossil fuels, biomass burning, termites, geological sources, and soil oxidation), wetlands constitute the largest contributor with the widest uncertainty range of 177-284 Tg(CH4) yr-1 according to the IPCC estimate. Wetlands are highly susceptible to climate change that might lead to wetland collapse. Such wetland destruction would decrease the terrestrial water storage capacity and thus contribute to sea level rise, consequently exacerbating coastal flooding problems. For both methane change and water storage change, wetland dynamics is a crucial factor with the largest uncertainty. Nevertheless, a complete and consistent map of global wetlands still needs to be obtained as the Ramsar Convention calls for a wetlands inventory and impact assessment. We develop a new method for observations of wetland change using Global Navigation Satellite Signals Reflectometry (GNSS-R) signatures for global wetland mapping in synergy with the existing capability, not only as a static inventory but also as a temporal dataset, to advance the capability for monitoring the dynamics of wetland extent relevant to addressing the science issues of CH4 emission change and terrestrial water storage change. We will demonstrate the capability of the new GNSS-R method over a rice field in the Ebro Delta wetland in Spain.

Juvenile bottlenecks and salinity shape grey mullet assemblages in Mediterranean estuaries

NASA Astrophysics Data System (ADS)

Cardona, Luis; Hereu, Bernat; Torras, Xavier

2008-05-01

Previous research has suggested that competitive bottlenecks may exist for the Mediterranean grey mullets (Osteichthyes, Mugilidae) at the fry stage with the exotic Cyprinus carpio (Osteichthyes, Cyprinidae) playing a central role. As a consequence, the structure of grey mullet assemblages at later stages is thought to reflect previous competition as well as differences in osmoregulatory skills. This paper tests that hypothesis by examining four predictions about the relative abundance of five grey mullet species in 42 Western Mediterranean estuary sites from three areas (Aiguamolls de l'Empordà, Ebro Delta and Minorca) differing in the salinity level and occurrence of C. carpio. Field data confirmed the predictions as: (1) Liza aurata and Mugil cephalus were scarce everywhere and never dominated the assemblage; (2) Liza saliens dominated the assemblage where the salinity level was higher than 13; (3) Liza ramado always dominated the assemblage where the salinity level was lower than 13 and C. carpio was present; and (4) Chelon labrosus dominated the assemblage only where the salinity level was lower than 13 and C. carpio was absent. The catch per unit effort of C. labrosus of any size was smaller in the presence of C. carpio than where it had not been introduced, which is in agreement with the juvenile competitive bottleneck hypothesis. Discriminant analysis confirmed that the assemblage structure was linked to the salinity level and the occurrence of C. carpio for both early juveniles and late juveniles as well as adults. The data reported here reveal that the structure of grey mullet assemblages inhabiting Mediterranean estuaries is determined by salinity and competitive interactions at the fry stage.

The morphology of saccular otoliths as a tool to identify different mugilid species from the Northeastern Atlantic and Mediterranean Sea

NASA Astrophysics Data System (ADS)

Callicó Fortunato, Roberta; Benedito Durà, Vicent; Volpedo, Alejandra

2014-06-01

In the Northeastern Atlantic and Mediterranean Sea there are 8 species of the Mugilidae family: Mugil cephalus, Liza aurata, Liza ramada, Oedalechilus labeo, Chelon labrosus, Liza saliens, Liza carinata and Liza haematocheila. The identification of mugilids is very important for local fisheries management and regulations, but it is difficult using gross morphological characters. This work aims to contribute to the identification of mullets present in the Northeastern Atlantic Ocean and Mediterranean Sea using saccular otolith features of each species. Specimens of C. labrosus, L. aurata, L. ramada, L. saliens and M. cephalus were obtained from Delta del Ebro (40°38'N-0°44'E) in artisanal catches. For L. carinata and O. labeo photographs extracted from AFORO online database were used. L. haematocheila was not studied for lack of otolith samples. A general pattern of the saccular otoliths for this family was identified: the shape of the otoliths are rectangular to oblong with irregular margins; they present a heterosulcoid, ostial sulcus acusticus, with an open funnel-like ostium to the anterior margin and a closed, tubular cauda, ending towards the posterior ventral corner, always larger than the ostium. In the present study, the mugilid species could be recognized using their saccular otolith morphology. Here we give the first key to identify Northeastern Atlantic and Mediterranean mullets. The distinctive features between the species were the position and centrality of the sulcus, the curvature of the cauda, the presence of areal depositions and plateaus, and the type of anterior and posterior regions. These features could be used not only to reinforce the identification keys through morphological and meristic characters of the species, but also to identify the species consumed by piscivores, being the otoliths the only identifiable remains of the individuals.

A revision of the species of Saturnius Manter, 1969 (Digenea: Hemiuridae), parasites of mullets (Teleostei: Mugilidae).

PubMed

Blasco-Costa, Isabel; Montero, Francisco E; Gibson, David I; Balbuena, Juan Antonio; Raga, Juan Antonio; Shvetsova, Ludmila S; Kostadinova, Aneta

2008-09-01

The genus Saturnius Manter, 1969 is defined, its species re-examined and a key to the species presented. S. overstreeti n. sp. is described from Mugil soiuy Basilewsky and M. cephalus L. from the Russian coast of the Sea of Japan and distinguished from the morphologically related S. papernai Overstreet, 1977 and S. maurepasi Overstreet, 1977. S. segmentatus Manter, 1969 is redescribed on the basis of the type- and newly collected material from M. cephalus on the Russian coast of the Sea of Japan. The morphometric variation of S. papernai is studied based on newly collected material from Liza aurata (Risso) in the Ebro Delta and off Santa Pola, Spain. The comparisons reveal lower ranges of most metrical features than previously known. A principal component analysis, carried out after adding the new data to those of Blasco-Costa et al. (2006), confirms the species identification. Other valid species recognised are S. mugilis (Yamaguti, 1970), S. maurepasi, S. belizensis Fischthal, 1977, S. dimitrovi Blasco-Costa et al., 2006 and S. minutus Blasco-Costa et al., 2006. Forms considered species inquirendae are S. valamugilis Rekharani & Madhavi, 1984, Bunocotyle constrictus Domnich & Sarabeev, 1999 [=S. papernai of Domnich & Sarabeev (2000a, b, c, d)], B. mugilis Yamaguti, 1970 of Solonchenko (1976) and S. mugilis of Dmitrieva & Gaevskaya (2001). Host and locality information is given in detail for all species. Lisa ramado (Risso) and Chelon labrosus (Cuvier) are new host records for S. papernai (sensu stricto) and S. dimitrovi. L. aurata is a new host record for S. dimitrovi and S. minutus, and L. saliens (Risso) is a new host record for S. minutus.

Reducing Pb poisoning in birds and Pb exposure in game meat consumers: the dual benefit of effective Pb shot regulation.

PubMed

Mateo, Rafael; Vallverdú-Coll, Núria; López-Antia, Ana; Taggart, Mark A; Martínez-Haro, Monica; Guitart, Raimon; Ortiz-Santaliestra, Manuel E

2014-02-01

The use of lead (Pb) ammunition in the form of shot pellets has been identified as a Pb exposure risk in wildlife and their human consumers. We explore the hypothesis that Pb shot ban enforcement reduces the risk of avian Pb poisoning as well as Pb exposure in game meat consumers. We assessed compliance with a partial ban on Pb shot commencing in 2003 by examination of 937 waterbirds harvested by hunters between 2007 and 2012 in the Ebro delta (Spain). Prevalence of Pb shot ingestion was determined, as were Pb concentrations in liver and muscle tissue to evaluate the potential for Pb exposure in game meat consumers. Hunted birds with only embedded Pb shot (no steel) declined from 26.9% in 2007-08 to <2% over the following three hunting seasons after ban reinforcement. Pb shot ingestion in mallards decreased from a pre-ban value of 30.2% to 15.5% in the post-ban period. Liver Pb levels were predominantly defined by the presence of ingested shot, whereas muscle levels were defined by the presence of both ingested and embedded shot. Only 2.5% of mallard muscle tissue had Pb levels above European Union regulations for meat (0.1μg/g wet weight) in the 2008-09 season, when Pb shot ingestion prevalence was also at a minimum (5.1%). Effective restrictions in Pb ammunition use have a dual benefit since this reduces Pb exposure for game meat consumers due to embedded ammunition as well as reducing Pb poisoning in waterbirds. Copyright © 2013 Elsevier Ltd. All rights reserved.

Energy density of zooplankton and fish larvae in the southern Catalan Sea (NW Mediterranean)

NASA Astrophysics Data System (ADS)

Barroeta, Ziortza; Olivar, M. Pilar; Palomera, Isabel

2017-06-01

In marine communities, energy of small planktonic organisms is transferred to their predators through feeding. The energy accumulated as organic substances by the different plankton organisms (Energetic Density content, ED) has been analysed in high latitudes and tropical areas, but not in the Mediterranean Sea. In this study, we approach this type of investigation for Mediterranean plankton through measures of total calorimetric content using an oxygen bomb calorimeter. We examined the spatiotemporal variation in the ED of microplankton (50-200 μm) and mesozooplankton (200-2000 μm), and two plankton-consumers, sardine (Sardina pilchardus) and anchovy (Engraulis encrasicolus) larvae. The study was carried out during the winter and summer of 2013 off the Ebro River Delta (NW Mediterranean Sea). Both plankton fractions showed a more coastal distribution and higher biomasses during winter, the period of sardine larvae occurrences, in front of a wider cross-shelf distribution and lower biomasses in summer, when anchovy appeared. ED values increased with the size of each plankton component, i.e., microzooplankton < mesozooplankton < fish larvae. A tendency for higher plankton ED in the winter period was observed, although being only significant for coastal zone, associated to the more productive waters there. Sardine and anchovy larvae showed an increasing trend in the amount of energy during development, with significantly lower ED between early larvae (6-10 mm standard length) and late postflexion stages (16-20 mm standard length). Small larvae of both species departed from a similarly low ED content, but in the next two size classes sardine larvae showed higher ED values than anchovy, being significantly higher in the 16-20 mm size class. Information on larval feeding patterns and larval growth rates for each species were used to discuss differences in energy allocation strategies.

Lactose digestion from flavored and frozen yogurts, ice milk, and ice cream by lactase-deficient persons.

PubMed

Martini, M C; Smith, D E; Savaiano, D A

1987-10-01

Lactose digestion from and tolerance to flavored and frozen yogurts, ice cream, and ice milk were evaluated (20 g lactose/meal) in lactase-deficient subjects by use of breath hydrogen techniques. Unflavored yogurt caused significantly less hydrogen production than milk (37 vs 185 delta ppm X h, n = 9). Flavored yogurt was intermediate (77 delta ppm X h). Subjects were free of symptoms after consuming flavored and unflavored yogurts. Of seven commercial yogurts tested, all contained significant levels of microbial beta-galactosidase (beta-gal). In addition, eight subjects were fed meals of milk, ice milk, ice cream, and frozen yogurts with and without cultures containing high levels of beta-gal. Peak hydrogen excretion after consumption of frozen yogurt with high beta-gal was less than one-half of that observed after the other five test meals and intolerance symptoms were absent. Tolerance to frozen yogurt, produced under usual commercial procedures, was found to be similar to that of ice milk and ice cream.

Controlling factors of spatial and temporal preservation of the geochronological signal in sediments during an orogenic cycle

NASA Astrophysics Data System (ADS)

Rat, Juliette; Mouthereau, Frédéric; Bernet, Matthias; Brichau, Stéphanie; Balvay, Mélanie; Garzanti, Eduardo; Ando, Sergio

2017-04-01

Detrital content of sediments preserved in basins provide constraints on the nature of source rocks, dynamics of sediment transport, and potentially on tectonics and climate changes. U-Pb dating method on detrital zircon is ideally suited for provenance studies due to the ability of U-Pb age data to resist several orogenic cycles. However, with the aim to track sediment source evolution over a single orogenic cycle and determine characteristic time and parameters controlling the geochronological signal preservation throughout the cycle from rifting, mountain building to post-collision evolution, low-temperature thermochronology combined with sediment petrography are more appropriate than the U-Pb dating approach taken alone. To better understanding processes at play in the long-term geochronological signal preservation we focus on the sediment record associated with the Iberia plate tectonic evolution, which is part of the OROGEN research project, co-financed by BRGM, TOTAL & CNRS. The Iberian plate recorded a period of extension in the Late Jurassic, followed during the Early Cretaceous (Aptian-Albian) by a major thinning event documented by thick syn-rift sediments in intraplate basins and plate-scale heating/cooling of the Iberia crust, as argued by published fission track ages. Paleogeographic reconstructions that are based on stratigraphic and lithofacies analyses in northern Iberia (Iberian Range, Pyrenees and Basque-Cantabrians Range), describe a large domain of continental/fluvial and shallow-marine siliciclastic deposition. The related detrital content was then recycled during the subsequent Pyrenean orogenic phase in the Ebro foreland basin, and eventually transfer to the Mediterranean realm during post-orogenic re-excavation of the Ebro basin. In this study, we complete the published time-temperature paths in the mesozoic syn-rift basins by providing new thermo-chronological analyses of well-dated syn-collision and post-collision stratigraphic sections of the Ebro basin to determine thermal control on preservation through burial and geothermal evolution. We combined this study with sediments petrography analyses to identify relative control of source petrography, hydraulic sorting, alteration and diagenesis processes on the signal preservation during sediment transfer. All these observations will ultimately be incorporated in a geodynamic reconstruction of Iberia, and compared with age predictions from a model coupling surface processes and thermal evolution.

Shelf Circulation Induced by an Orographic Wind Jet

NASA Astrophysics Data System (ADS)

Ràfols, Laura; Grifoll, Manel; Jordà, Gabriel; Espino, Manuel; Sairouní, Abdel; Bravo, Manel

2017-10-01

The dynamical response to cross-shelf wind-jet episodes is investigated. The study area is located at the northern margin of the Ebro Shelf, in the Northwestern (NW) Mediterranean Sea, where episodes of strong northwesterly wind occur. In this case, the wind is channeled through the Ebro Valley and intensifies upon reaching the sea, resulting in a wind jet. The wind-jet response in terms of water circulation and vertical density structure is investigated using a numerical model. The numerical outputs agree with water current observations from a high-frequency radar. Additionally, temperature, sea level, and wind measurements are also used for the skill assessment of the model. For the wind-jet episodes, the numerical results show a well-defined two-layer circulation in the cross-shelf direction, with the surface currents in the direction of the wind. This pattern is consistent with sea level set-down due to the wind effect. The comparison of the vertical structure response for different episodes revealed that the increase of stratification leads to an onshore displacement of the transition from inner shelf to mid-shelf. In general, the cross-shelf momentum balance during a wind-jet episode exhibits a balance between the frictional terms and the pressure gradient in shallow waters, shifting to a balance between the Coriolis force and the wind stress terms in deeper waters.

Uncertainty of the peak flow reconstruction of the 1907 flood in the Ebro River in Xerta (NE Iberian Peninsula)

NASA Astrophysics Data System (ADS)

Ruiz-Bellet, Josep Lluís; Castelltort, Xavier; Balasch, J. Carles; Tuset, Jordi

2017-02-01

There is no clear, unified and accepted method to estimate the uncertainty of hydraulic modelling results. In historical floods reconstruction, due to the lower precision of input data, the magnitude of this uncertainty could reach a high value. With the objectives of giving an estimate of the peak flow error of a typical historical flood reconstruction with the model HEC-RAS and of providing a quick, simple uncertainty assessment that an end user could easily apply, the uncertainty of the reconstructed peak flow of a major flood in the Ebro River (NE Iberian Peninsula) was calculated with a set of local sensitivity analyses on six input variables. The peak flow total error was estimated at ±31% and water height was found to be the most influential variable on peak flow, followed by Manning's n. However, the latter, due to its large uncertainty, was the greatest contributor to peak flow total error. Besides, the HEC-RAS resulting peak flow was compared to the ones obtained with the 2D model Iber and with Manning's equation; all three methods gave similar peak flows. Manning's equation gave almost the same result than HEC-RAS. The main conclusion is that, to ensure the lowest peak flow error, the reliability and precision of the flood mark should be thoroughly assessed.

Crop yields response to water pressures in the Ebro basin in Spain: risk and water policy implications

NASA Astrophysics Data System (ADS)

Quiroga, S.; Fernández-Haddad, Z.; Iglesias, A.

2011-02-01

The increasing pressure on water systems in the Mediterranean enhances existing water conflicts and threatens water supply for agriculture. In this context, one of the main priorities for agricultural research and public policy is the adaptation of crop yields to water pressures. This paper focuses on the evaluation of hydrological risk and water policy implications for food production. Our methodological approach includes four steps. For the first step, we estimate the impacts of rainfall and irrigation water on crop yields. However, this study is not limited to general crop production functions since it also considers the linkages between those economic and biophysical aspects which may have an important effect on crop productivity. We use statistical models of yield response to address how hydrological variables affect the yield of the main Mediterranean crops in the Ebro river basin. In the second step, this study takes into consideration the effects of those interactions and analyzes gross value added sensitivity to crop production changes. We then use Montecarlo simulations to characterize crop yield risk to water variability. Finally we evaluate some policy scenarios with irrigated area adjustments that could cope in a context of increased water scarcity. A substantial decrease in irrigated land, of up to 30% of total, results in only moderate losses of crop productivity. The response is crop and region specific and may serve to prioritise adaptation strategies.

Risk of water scarcity and water policy implications for crop production in the Ebro Basin in Spain

NASA Astrophysics Data System (ADS)

Quiroga, S.; Fernández-Haddad, Z.; Iglesias, A.

2010-08-01

The increasing pressure on water systems in the Mediterranean enhances existing water conflicts and threatens water supply for agriculture. In this context, one of the main priorities for agricultural research and public policy is the adaptation of crop yields to water pressures. This paper focuses on the evaluation of hydrological risk and water policy implications for food production. Our methodological approach includes four steps. For the first step, we estimate the impacts of rainfall and irrigation water on crop yields. However, this study is not limited to general crop production functions since it also considers the linkages between those economic and biophysical aspects which may have an important effect on crop productivity. We use statistical models of yield response to address how hydrological variables affect the yield of the main Mediterranean crops in the Ebro River Basin. In the second step, this study takes into consideration the effects of those interactions and analyzes gross value added sensitivity to crop production changes. We then use Montecarlo simulations to characterize crop yield risk to water variability. Finally we evaluate some policy scenarios with irrigated area adjustments that could cope in a context of increased water scarcity. A substantial decrease in irrigated land, of up to 30% of total, results in only moderate losses of crop productivity. The response is crop and region specific and may serve to prioritise adaptation strategies.

Evaluating and comparing methods of sinkhole susceptibility mapping in the Ebro Valley evaporite karst (NE Spain)

NASA Astrophysics Data System (ADS)

Galve, J. P.; Gutiérrez, F.; Remondo, J.; Bonachea, J.; Lucha, P.; Cendrero, A.

2009-10-01

Multiple sinkhole susceptibility models have been generated in three study areas of the Ebro Valley evaporite karst (NE Spain) applying different methods (nearest neighbour distance, sinkhole density, heuristic scoring system and probabilistic analysis) for each sinkhole type separately (cover collapse sinkholes, cover and bedrock collapse sinkholes and cover and bedrock sagging sinkholes). The quantitative and independent evaluation of the predictive capability of the models reveals that: (1) The most reliable susceptibility models are those derived from the nearest neighbour distance and sinkhole density. These models can be generated in a simple and rapid way from detailed geomorphological maps. (2) The reliability of the nearest neighbour distance and density models is conditioned by the degree of clustering of the sinkholes. Consequently, the karst areas in which sinkholes show a higher clustering are a priori more favourable for predicting new occurrences. (3) The predictive capability of the best models obtained in this research is significantly higher (12.5-82.5%) than that of the heuristic sinkhole susceptibility model incorporated into the General Urban Plan for the municipality of Zaragoza. Although the probabilistic approach provides lower quality results than the methods based on sinkhole proximity and density, it helps to identify the most significant factors and select the most effective mitigation strategies and may be applied to model susceptibility in different future scenarios.

Insight from Genomics on Biogeochemical Cycles in a Shallow-Sea Hydrothermal System

NASA Astrophysics Data System (ADS)

Lu, G. S.; Amend, J.

2015-12-01

Shallow-sea hydrothermal ecosystems are dynamic, high-energy systems influenced by sunlight and geothermal activity. They provide accessible opportunities for investigating thermophilic microbial biogeochemical cycles. In this study, we report biogeochemical data from a shallow-sea hydrothermal system offshore Paleochori Bay, Milos, Greece, which is characterized by a central vent covered by white microbial mats with hydrothermally influenced sediments extending into nearby sea grass area. Geochemical analysis and deep sequencing provide high-resolution information on the geochemical patterns, microbial diversity and metabolic potential in a two-meter transect. The venting fluid is elevated in temperature (~70oC), low in pH (~4), and enriched in reduced species. The geochemical pattern shows that the profile is affected by not only seawater dilution but also microbial regulation. The microbial community in the deepest section of vent core (10-12 cm) is largely dominated by thermophilic archaea, including a methanogen and a recently described Crenarcheon. Mid-core (6-8 cm), the microbial community in the venting area switches to the hydrogen utilizer Aquificae. Near the sediment-water interface, anaerobic Firmicutes and Actinobacteria dominate, both of which are commonly associated with subsurface and hydrothermal sites. All other samples are dominated by diverse Proteobacteria. The sulfate profile is strongly correlated with the population size of delta- and episilon-proteobactia. The dramatic decrease in concentrations of As and Mn in pore fluids as a function of distance from the vent suggests that in addition to seawater dilution, microorganisms are likely transforming these and other ions through a combination of detoxification and catabolism. In addition, high concentrations of dissolved Fe are only measurable in the shallow sea grass area, suggesting that iron-transforming microorganisms are controlling Fe mobility, and promoting biomineralization. Taken together, these samples represent the effects of submarine venting on sediment microbial communities both vertically and horizontally in the predicted fluid flow path, and will provide a detailed investigation of genetic potential for biogeochemical cycling at Paleochori Bay.

Comparative effects of sulfuric and nitric acid rain on litter decomposition and soil microbial community in subtropical plantation of Yangtze River Delta region.

PubMed

Liu, Xin; Zhang, Bo; Zhao, Wenrui; Wang, Ling; Xie, Dejin; Huo, Wentong; Wu, Yanwen; Zhang, Jinchi

2017-12-01

Acid rain is mainly caused by dissolution of sulfur dioxide and nitrogen oxides in the atmosphere, and has a significant negative effect on ecosystems. The relative composition of acid rain is changing gradually from sulfuric acid rain (SAR) to nitric acid rain (NAR) with the rapidly growing amount of nitrogen deposition. In this study, we investigated the impact of simulated SAR and NAR on litter decomposition and the soil microbial community over four seasons since March 2015. Results first showed that the effects of acid rain on litter decomposition and soil microbial were positive in the early period of the experiment, except for SAR on soil microbes. Second, soil pH with NAR decreased more rapidly with the amount of acid rain increased in summer than with SAR treatments. Only strongly acid rain (both SAR and NAR) was capable of depressing litter decomposition and its inhibitory effect was stronger on leaf than on fine root litter. Meanwhile, NAR had a higher inhibitory effect on litter decomposition than SAR. Third, in summer, autumn and winter, PLFAs were negatively impacted by the increased acidity level resulting from both SAR and NAR. However, higher acidity level of NAR (pH=2.5) had the strongest inhibitory impact on soil microbial activity, especially in summer. In addition, Gram-negative bacteria (cy19:0) and fungi (18:1ω9) were more sensitive to both SAR and NAR, and actinomycetes was more sensitive to SAR intensity. Finally, soil total carbon, total nitrogen and pH were the most important soil property factors affecting soil microbial activity, and high microbial indices (fungi/bacteria) with high soil pH. Our results suggest that the ratio of SO 4 2- to NO 3 - in acid rain is an important factor which could affect litter decomposition and soil microbial in subtropical forest of China. Copyright © 2017. Published by Elsevier B.V.

Mercury Cycling in Agricultural and Non-agricultural Wetlands of the Yolo Bypass Wildlife Area, California: Sediment Biogeochemistry

NASA Astrophysics Data System (ADS)

Marvin-Dipasquale, M. C.; Windham-Myers, L.; Alpers, C. N.; Agee, J. L.; Cox, M. H.; Kakouros, E.; Wren, S. L.

2007-12-01

The Yolo Bypass Wildlife Area (YBWA) is part of the larger Yolo Bypass floodwater protection zone associated with the Sacramento River and the Sacramento-San Joaquin Delta, California. Land use in the YBWA consists of white and wild rice fields, seasonally flooded fallow agricultural fields, and permanently and seasonally flooded non-agricultural wetlands used for resident and migratory waterfowl. A recent assessment of mercury (Hg) and methylmercury (MeHg) loads indicates that the Yolo Bypass is responsible for a high proportion of the aqueous MeHg entering the Delta, and that biota from the Yolo Bypass are considerably elevated in MeHg. The current study examines benthic MeHg production and biogeochemical controls on this process, as a function of YBWA land use, wetland management, and agricultural practices during the 2007 rice growing season (June to October). Preliminary results indicate that in the week following initial flooding of agricultural fields, prior to the establishment of rice plants, the microbial community in the 0-2 cm surface sediment zone exhibited very little potential Hg(II)-methylation activity compared to the permanent wetland habitat (as assessed via the 203Hg(II)- methylation assay). Approximately 1 month after flooding, rice plants were established and the activity of the resident Hg(II)-methylating microbial community had increased substantially in all agricultural fields, although the observed rates of MeHg production were still much lower than those observed in the permanent wetland setting. Ongoing field sampling includes analysis of reactive Hg(II) in sediments and of iron and sulfur redox species in sediments and pore waters.

Can a future mission detect a habitable ecosystem on Europa, or Ganymede?

NASA Astrophysics Data System (ADS)

Chela Flores, Julian

2010-05-01

The considerable evidence for the presence of a liquid ocean over a silicate core makes Europa a candidate for the emergence of a second evolutionary pathway of autochthonous life. The most urgent question in astrobiology is the origin of habitable ecosystems—a question in geochemistry—rather than the alternative search for the origin of life itself—a question in chemical evolution (Chela-Flores, 2010). Since certain bodies may share a similar geophysical past with the Earth, a question suggests itself: Can available instrumentation be the ‘pioneer' in the discovery of habitable ecosystems in geophysical environments similar to the early Earth, where oceans were in contact with a silicate core? A central aspect of this dilemma is the element sulphur (S). A reliable window on the nature of the early terrestrial habitable ecosystems is the Pilbara Craton (Australia), a rich fossiliferous archive of the early steps of evolution, having preserved details of ancient hydrothermal vents. It contains a 3.47 Ga barite deposit with microfossils of a complex set of sulphate-reducing bacteria (Shen and Buick, 2004). The large spread in the delta 34S values provides the earliest reliable biomarker from the early Earth. Europa may represent the only other case in the Solar System in which liquid water has been in contact with a silicate core over geologic time in perfect analogy with the early Earth (Bland et al., 2009). The following hypothesis is forced upon us: The presence of hydrothermal activity at the interface of the silicate core and the Europan ocean can provide a variety of biogenic chemicals that play a role in sustaining microbial life at the ocean floor. This is the source of microbial life elsewhere in the ocean and of biomarkers on its icy surface. This hypothesis is subject to a feasible experimental test: Europa's non-ice surficial elements were found to be widespread, patchy and, most likely, endogenous. We argue that penetrators should be inserted in orbital probes in the future exploration of Jupiter's System (Gowen et al., 2009). There are alternative views on the effect of space weather on the radiation-induced S-cycles produced on the surficial molecules; but S is common to both interpretations (Carlson et al., 1999; McCord et al., 1999). The largest known S-fractionations are due to microbial reduction, and not to thermochemical processes. Besides, sulphate abiotic reductions are generally not as large as the biogenic ones (Kiyosu and Krouse, 1990). From experience with a natural population, this type of biota is able to fractionate efficiently the S-isotopes up to delta 34S of -70 per mil (Wortmann et al., 2001). Dissimilatory sulphate reducers are ubiquitous on Earth, producing the largest fractionations in the sulphur stable isotopes. These microbes are widely distributed in terrestrial anoxic environments.Consequently, sulphate reducers are the most evident candidates for the microorganisms populating a habitable Europan ecosystem. Microbial fractionation of stable S-isotopes argue in favour of penetrators for surveying the surface of not only Europa, but also of Ganymede, where surficial sulphur has been detected (McCord et al., 1997). The Europa-Jupiter System Mission (EJSM) intends to explore in the 2020s both of these satellites (Grasset et al., 2009). According to our hypothesis we predict that penetrators (supplied with mass spectrometry) should yield different results for fractionated sulphur. The icy patches on Europa should give substantial depletions of delta 34S, while measurements on Ganymede should give significantly lower values for the depletion of delta 34S. (Since the largest of the Galilean satellites lacks an ocean-core interface, according to our hypothesis it would not support life.) These diverging results—a large minus delta 34S for the Europan sulphur patches, and a small minus delta 34S for the Ganymede surficial sulphur—would provide a clear test for the hypothesis that a habitable ecosystem has emerged on Europa. The test is well within reach of available technology that is needed for planning the eventual penetrator payload. References (*) Bland, M. T. et al. (2009) The orbital-thermal evolution and global expansion of Ganymede. Icarus 200, 207-221. Carlson, R. W. et al. (1999) Sulfuric Acid on Europa and the Radiolytic Sulfur Cycle. Science 286, 97-99. Chela-Flores, J. (2010) Instrumentation for the search of habitable ecosystems in the future exploration of Europa and Ganymede. International Journal of Astrobiology, in press. http://www.ictp.it/chelaf/jcfSeamless.pdf Gowen, R. et al. (2009) Looking for Astrobiological Signatures with Penetrators on Europa. Physical and Engineering Sciences Exploratory Workshops, Abstracts, Mulhouse, France. http://www.ictp.it/chelaf/ESFsummary.pdf Grasset, O. et al. (2009) "The Jupiter Ganymede Orbiter as part of the ESA/NASA Europa Jupiter System Mission (EJSM),EPSC Abstracts, 4: EPSC2009-784, European Planetary Science Congress. Kiyosu, Y. and Krouse, H.R. (1990) The role of organic acid in the abiogenic reduction of sulfate and the sulfur isotope effect. Geochemical Journal 24, 21-27. McCord et al. (1997) Organics and Other Molecules in the Surfaces of Callisto and Ganymede. Science 278, 271 - 275. McCord, T. B. et al. (1999) Hydrated salt minerals on Europa's Surface from the Galileo near-infrared mapping spectrometer (NIMS) investigation. J. Geophys. Res. 104, 11827-11851. Shen, Y. and Buick, R. (2004) The antiquity of microbial sulfate reduction. Earth-Science Reviews 64, 243-272. Wortmann, U.G. et al. (2001) Hypersulfidic deep biosphere indicates extreme sulfur isotope fractionation during single-step microbial sulfate reduction. Geology 29, 647-650. (*) Please notice that in both website references to the Academic Page of the author, the reader should insert the symbol twiddle in front of chelaf.

Isotopic Evidence for the Source and Fate of Phosphorus in Everglades Wetland Ecosystems

NASA Technical Reports Server (NTRS)

Li, Xin; Wang, Yang; Stern, Jennifer; Gu, Binhe

2011-01-01

Phosphorus has historically been a limiting nutrient in the Florida Everglades. Increased P loading to the Everglades over the past several decades has led to significant changes in water quality and plant communities. Stormwater runoff that drains agricultural lands and enters the Water Conservation Areas (WCAs) are known to contain elevated levels of P, but the exact source of this P has not been fully determined. Here the results of an O isotope study of dissolved inorganic phosphate (DIP) in both polluted and relatively pristine (or reference) areas of the Everglades are reported. The data reveal spatial and temporal variations in the delta 18O signature of DIP, reflecting the source and the degree of cycling of P. The delta 18O values of DIP collected from the Everglades National Park were close or equal to the predicted delta 18O values of DIP formed in situ in equilibrium with ambient water, indicating that P is quickly cycled in the water column in oligotrophic ecosystems with very low P concentrations. However, most DIP samples collected from areas impacted by agricultural runoff yielded delta 18O values that deviated from the predicted equilibrium DIP delta 18O values based on the delta 18O of water and water temperature, suggesting that biological cycling of P was not rapid enough to remove the fertilizer ?18O signature in the DIP pool from areas receiving high P loading. The delta 18O signature of DIP in impacted areas reflects a mixing of fertilizer P and biologically cycled P, where the relative proportions of biologically cycled vs. fertilizer DIP are controlled by both biological (microbial activities and plant uptake) and hydrologic factors (loading rate and residence time). Using a two-end-member (i.e., fertilizer P and biologically cycled P) mixing model, fertilizers were estimated to contribute about 15 100% of the DIP pool in the highly impacted areas of the northern Everglades, whereas the DIP pool in the reference (i.e., relatively pristine) wetlands in the Everglades National Park was dominated by biologically cycled P. The study shows that O isotopic measurements of dissolved PO(exp 3-, sub 4) can be a useful tool for tracing the fertilizer P inputs to freshwater ecosystems.

US Geological Survey Toxic Substances Hydrology Program: Proceedings of the technical meeting, Phoenix, Arizona, September 26-30, 1988

USGS Publications Warehouse

Mallard, Gail E.; Ragone, Stephen E.

1989-01-01

Crude oil floating at the surface of a shallow aquifer of glacial outwash, near Bemidji, Minnesota, is altered by geochemical processes. Hydrocarbons from the oil are attenuated by several reactions that include aerobic and anaerobic microbial degradation. These degradation reactions result in the development of geochemical facies in the shallow groundwater system. Groundwater most affected by the presence of organic compounds is anoxic, and concentrations of methane, dissolved organic carbon, and total inorganic are high--0.76 millimole/L, 2.9 millimole/L, and 12.3 millimole/L, respectively. The concentrations of chemical species and delta-(13)C isotope values indicate that the plume near the oil lens has become progressively more reducing. Over a 4-year period (1984 through 1987), the concentrations of methane and iron have increased by a factor of > 25. The data suggest that sequential degradation occurs, as predicted by thermo-dynamics: manganese is reduced before iron is reduced, which occurs before methanogenesis. These data provide field evidence that reduction of iron and manganese is an important mechanism of decomposition of organic matter in aquifers. The delta-(13)C values of inorganic carbon of the native groundwater range from -12 ppt to -15 ppt as a result of mixing of soil CO2 with CO2 from the dissolution of carbonates. Non methanogenic biodegradation of oil constituents adds isotopically light CO2 to the groundwater because the oil has a delta-(13)C value of 28 ppt. The delta-(13)C value of inorganic carbon in the reducing zone have become progressively heavier from 1985 through 1987. The maximum change occurs 15 m downgradient from the oil lens, where the delta-(13)C values increased from -21.6 ppt to -5.35 ppt. This change indicates that the plume has become more reducing and methanogenic over time. 

The value of knowing better - Losses from natural hazards

NASA Astrophysics Data System (ADS)

Mysiak, J.; Galarraga, I.,; Garrido, A.; Interwies, E.; van Bers, C.; Vandenberghe, V.; Farinosi, F.; Foudi, S.; Görlitz, S.; Hernández-Mora, N.; Gil, M.; Grambow, C.

2012-04-01

In a highly emotional speech delivered last year after a series of strikes, Julia Gilbert, the Australian PM, noted that Australia has watched in horror as day after day a new chapter in natural disaster history has been written. And so did the whole world. 2011 went on to become the costliest year in terms of natural hazard losses in the recent history, with the total costs topping 380 billion US dollars. Almost a half of the insured losses were caused by a single event - the Fukushima Dai'ichi nuclear power plant accident triggered by a tsunami that followed an earthquake of MW 6.6 (Richer 9.0) magnitude. The Fukushima disaster has taught a costly lesson, once again: What you least expect, happens. The estimates of losses inflicted by natural hazards are, to put it mildly, incomplete and hardly representative of the ripple effects on regional and global economy, and the wider effects on social fabric, wellbeing and ecosystems that are notoriously difficult to monetise. The knowledge of the full magnitude of losses is not an end in itself. The economics of disasters is an emerging academic field, struggling to uncover the patterns of vulnerability to natural hazards, and provide insights useful for designing effective disaster risk reduction measures and policies. Yet the costly lessons learned are often neglected. In this paper we analyse selected significantly damaging events caused by hydrometeorological and climatologic events (floods and droughts) in four river basins/countries: Ebro/Spain, Po/Italy, Weser/Germany and Scheldt/Flanders-Belgium. Our analysis is focussed on identifying the gaps in reported damage estimates, and conducting additional original research and assessment that contribute to filling those gaps. In the case of drought, all the reference cases except the Ebro refer to the exceptionally hot and dry summer 2003. The drought event examined in the Ebro river basin is the prolonged period of deficient precipitation between 2004 and 2008. The flood reference cases are more uniformly distributed both intra- and interannually. They include Jan-Feb 2003 and Mar-Apr 2007 flood in the Ebro basin, the Oct 2000 flood in Po basin, Jul 2002 flood in Weser basin and Nov 2010 flood in the Scheldt. We have identified significant knowledge gaps in the current accounts of the impacts inflicted by the above disaster strikes. Almost no information is available about intangible, indirect and environmental costs. The structural damage is only partly examined. The existing assessment studies are based either on self-reported losses of the affected subjects and methodologies yielding divergent results about the extent (or even order of magnitude) of the losses suffered. The studies are rarely subjected to a critical analysis and quality check. Uncertainty surrounding the damage estimates is either omitted or reported only as a range of the likely magnitude of the disaster costs. Our analysis offers a systematic review of the damage across the affected sectors and communities. A number of assessment techniques were applied and their, pros and cons discussed. The paper highlights the value of an in-depth assessment of significantly damaging events for a better understanding of vulnerability, that is likely to be amplified as a result of anthropogenic climate change and economic development in the hazard-prone areas.

Arsenic mobilization in the aquifers of three physiographic settings of West Bengal, India: understanding geogenic and anthropogenic influences.

PubMed

Bhowmick, Subhamoy; Nath, Bibhash; Halder, Dipti; Biswas, Ashis; Majumder, Santanu; Mondal, Priyanka; Chakraborty, Sudipta; Nriagu, Jerome; Bhattacharya, Prosun; Iglesias, Monica; Roman-Ross, Gabriela; Guha Mazumder, Debendranath; Bundschuh, Jochen; Chatterjee, Debashis

2013-11-15

A comparative hydrogeochemical study was carried out in West Bengal, India covering three physiographic regions, Debagram and Chakdaha located in the Bhagirathi-Hooghly alluvial plain and Baruipur in the delta front, to demonstrate the control of geogenic and anthropogenic influences on groundwater arsenic (As) mobilization. Groundwater samples (n = 90) from tube wells were analyzed for different physico-chemical parameters. The low redox potential (Eh = -185 to -86 mV) and dominant As(III) and Fe(II) concentrations are indicative of anoxic nature of the aquifer. The shallow (<100 m) and deeper (>100 m) aquifers of Bhagirathi-Hooghly alluvial plains as well as shallow aquifers of delta front are characterized by Ca(2+)HCO3(-) type water, whereas Na(+) and Cl(-) enrichment is found in the deeper aquifer of delta front. The equilibrium of groundwater with respect to carbonate minerals and their precipitation/dissolution seems to be controlling the overall groundwater chemistry. The low SO4(2-) and high DOC, PO4(3-) and HCO3(-) concentrations in groundwater signify ongoing microbial mediated redox processes favoring As mobilization in the aquifer. The As release is influenced by both geogenic (i.e. geomorphology) and anthropogenic (i.e. unsewered sanitation) processes. Multiple geochemical processes, e.g., Fe-oxyhydroxides reduction and carbonate dissolution, are responsible for high As occurrence in groundwaters. Copyright © 2012 Elsevier B.V. All rights reserved.

Crop Uptake of Arsenic from Flooded Paddy Fields in the Mekong Delta

NASA Astrophysics Data System (ADS)

Mohr, K.; Boye, K.

2014-12-01

Arsenic is found naturally in the soils in the Mekong delta in Vietnam and Cambodia. It originates from erosion in the Himalayas. When similar levels of arsenic are present in well aerated soil, it is not dangerous, because it is strongly bound to soil particles and not readily plant available. Arsenic is released when the soil is saturated with water, and therefore contaminates crops grown in flooded fields. This results in people being exposed to unsafe levels of arsenic from their food, such as rice and lotus, which are normally grown under flooded conditions. Rice is a staple food in these regions, so the transfer of arsenic from soil, to water, and ultimately into the grain, poses a threat to human health. We have conducted a limited, preliminary field survey of arsenic levels in soil, flood water, and crops from distinctly different paddy fields in the lower Mekong delta in Vietnam and Cambodia. The purpose of the study was to identify soils and crops (or specific plant parts) that are especially prone to arsenic transfer from soil to crop, and vice versa (i.e. arsenic uptake is prevented in spite of being present in the soil). In addition to arsenic concentration in soil, plant and water, we are examining other elements, such as carbon, nitrogen, sulfur and iron, which give us clues about what chemical and microbial processes that control the overall arsenic uptake.

Contamination of drinking water resources in the Mekong delta floodplains: arsenic and other trace metals pose serious health risks to population.

PubMed

Buschmann, Johanna; Berg, Michael; Stengel, Caroline; Winkel, Lenny; Sampson, Mickey L; Trang, Pham Thi Kim; Viet, Pham Hung

2008-08-01

This study presents a transnational groundwater survey of the 62,000 km(2) Mekong delta floodplain (Southern Vietnam and bordering Cambodia) and assesses human health risks associated with elevated concentrations of dissolved toxic elements. The lower Mekong delta generally features saline groundwater. However, where groundwater salinity is <1 g L(-)(1) Total Dissolved Solids (TDS), the rural population started exploiting shallow groundwater as drinking water in replacement of microbially contaminated surface water. In groundwater used as drinking water, arsenic concentrations ranged from 0.1-1340 microg L(-)(1), with 37% of the studied wells exceeding the WHO guidelines of 10 microg L(-)(1) arsenic. In addition, 50% exceeded the manganese WHO guideline of 0.4 mg L(-)(1), with concentrations being particularly high in Vietnam (range 1.0-34 mg L(-)(1)). Other elements of (minor) concern are Ba, Cd, Ni, Se, Pb and U. Our measurements imply that groundwater contamination is of geogenic origin and caused by natural anoxic conditions in the aquifers. Chronic arsenic poisoning is the most serious health risk for the ~2 million people drinking this groundwater without treatment, followed by malfunction in children's development through excessive manganese uptake. Government agencies, water specialists and scientists must get aware of the serious situation. Mitigation measures are urgently needed to protect the unaware people from such health problems.

Worldwide Report, Nuclear Development and Proliferation No. 186

DTIC Science & Technology

1983-05-03

normality that at first took a great deal of effort to achieve. 33 C___ ACIRC//TO AGUA VAPOR SECUNt/ CMMWMI CU’CTO AG3UA RMFI(3PACION 1. Nucleo del reactor 6...is used to cool various components of the powerplant, but in any case it is separated from possibly contaminated ele- ments by at least two...Central do Asc6 10. Aqua do ref rigeracibn hay 3 generadorea do vapor) (Procedente en este caso del rio Ebro) 4. Presurizador 11. Transformador (Sirve

Using Nitrogen and Oxygen Isotope Compositions of Nitrate to Distinguish Contaminant Sources in Hanford Soil and Groundwater

DOE Office of Scientific and Technical Information (OSTI.GOV)

Conrad, Mark; Bill, Markus

2008-08-01

The nitrogen ({delta}{sup 15}N) and oxygen ({delta}{sup 18}O) isotopic compositions of nitrate in the environment are primarily a function of the source of the nitrate. The ranges of isotopic compositions for nitrate resulting from common sources are outlined in Figure 1 from Kendall (1998). As noted on Figure 1, processes such as microbial metabolism can modify the isotopic compositions of the nitrate, but the effects of these processes are generally predictable. At Hanford, nitrate and other nitrogenous compounds were significant components of most of the chemical processes used at the site. Most of the oxygen in nitrate chemicals (e.g., nitricmore » acid) is derived from atmospheric oxygen, giving it a significantly higher {delta}{sup 18}O value (+23.5{per_thousand}) than naturally occurring nitrate that obtains most of its oxygen from water (the {delta}{sup 18}O of Hanford groundwater ranges from -14{per_thousand} to -18{per_thousand}). This makes it possible to differentiate nitrate from Hanford site activities from background nitrate at the site (including most fertilizers that might have been used prior to the Department of Energy plutonium production activities at the site). In addition, the extreme thermal and chemical conditions that occurred during some of the waste processing procedures and subsequent waste storage in select single-shell tanks resulted in unique nitrate isotopic compositions that can be used to identify those waste streams in soil and groundwater at the site (Singleton et al., 2005; Christensen et al., 2007). This report presents nitrate isotope data for soil and groundwater samples from the Hanford 200 Areas and discusses the implications of that data for potential sources of groundwater contamination.« less

Isotopic and Geochemical Fingerprinting of a Polygonal Arctic Ecosystem

NASA Astrophysics Data System (ADS)

Throckmorton, H.; Heikoop, J. M.; Newman, B. D.; Wilson, C. J.; Wullschleger, S. D.

2015-12-01

Arctic tundra contain large C stocks and may be an important source of CO2 and CH4 over the next century due to a rapidly changing climate, degrading permafrost, and redistribution of water across high latitude landscapes. This presentation synthesizes geochemical and isotopic data and examines vertical and lateral factors and processes critical to predicting the C, N, and water balance of tundra ecosystems. Stable water isotope analyses (delta 2H and delta 18O) indicate that summer rain is the dominant source for active layer groundwater, with melting seasonal ice contributing to deeper pore waters in late summer. Microtopography and water table effects on geochemistry were apparent from a comprehensive spatial examination of active layer biogeochemistry, showing a number of significant differences in the concentrations of cations and anions for high- vs. low-centered polygons, microtopographic features (polygonal centers vs. troughs), and with depth. Results have implications for future nutrient availability with projected permafrost degradation and landscape evolution, suggesting greater availability of limiting nutrients (sulfate, phosphate, and nitrate) where polygons undergo a shift from low- to high-centered. Nitrate isotopes (delta 15N and delta 18O) indicated a predominantly microbial source for nitrate in high centered polygons active layers. However, atmospheric nitrate was preserved in permafrost, and may serve as a potential indicator of permafrost degradation. Additionally, results suggest that older, deeper C sources may be promoting a shift in methanogenic pathway, from predominantly acetoclastic to hydrogenotrophic. This mechanistic shift is attributed to the source and quality of available organic substrate. Overall, results showed substantial lateral and vertical variability in biogeochemical, biogeophysical, and hydrological processes across microtopographic- to landscape scales that needs to be accounted for in fine and intermediate scale models.

Ecosystem and physiological controls over methane production in northern wetlands

NASA Technical Reports Server (NTRS)

Valentine, David W.; Holland, Elisabeth A.; Schimel, David S.

1994-01-01

Peat chemistry appears to exert primary control over methane production rates in the Canadian Northern Wetlands Study (NOWES) area. We determined laboratory methane production rate potentials in anaerobic slurries of samples collected from a transect of sites through the NOWES study area. We related methane production rates to indicators of resistance to microbial decay (peat C: N and lignin: N ratios) and experimentally manipulated substrate availability for methanogenesis using ethanol (EtOH) and plant litter. We also determined responses of methane production to pH and temperature. Methane production potentials declined along the gradient of sites from high rates in the coastal fens to low rates in the interior bogs and were generally highest in surface layers. Strong relationships between CH4 production potentials and peat chemistry suggested that methanogenesis was limited by fermentation rates. Methane production at ambient pH responded strongly to substrate additions in the circumneutral fens with narrow lignin: N and C: N ratios (delta CH4/delta EtOH = 0.9-2.3 mg/g) and weakly in the acidic bogs with wide C: N and lignin: N ratios (delta CH4/delta EtOH = -0.04-0.02 mg/g). Observed Q(sub 10) values ranged from 1.7 to 4.7 and generally increased with increasing substrate availability, suggesting that fermentation rates were limiting. Titration experiments generally demonstrated inhibition of methanogenesis by low pH. Our results suggest that the low rates of methane emission observed in interior bogs during NOWES likely resulted from pH and substrate quality limitation of the fermentation step in methane production and thus reflect intrinsically low methane production potentials. Low methane emission rates observed during NOWES will likely be observed in other northern wetland regions with similar vegetation chemistry.

The radiocarbon signature of microorganisms in the mesopelagic ocean.

PubMed

Hansman, Roberta L; Griffin, Sheila; Watson, Jordan T; Druffel, Ellen R M; Ingalls, Anitra E; Pearson, Ann; Aluwihare, Lihini I

2009-04-21

Several lines of evidence indicate that microorganisms in the meso- and bathypelagic ocean are metabolically active and respiring carbon. In addition, growing evidence suggests that archaea are fixing inorganic carbon in this environment. However, direct quantification of the contribution from deep ocean carbon sources to community production in the dark ocean remains a challenge. In this study, carbon flow through the microbial community at 2 depths in the mesopelagic zone of the North Pacific Subtropical Gyre was examined by exploiting the unique radiocarbon signatures (Delta(14)C) of the 3 major carbon sources in this environment. The radiocarbon content of nucleic acids, a biomarker for viable cells, isolated from size-fractionated particles (0.2-0.5 microm and >0.5 microm) showed the direct incorporation of carbon delivered by rapidly sinking particles. Most significantly, at the 2 mesopelagic depths examined (670 m and 915 m), carbon derived from in situ autotrophic fixation supported a significant fraction of the free-living microbial community (0.2-0.5 microm size fraction), but the contribution of chemoautotrophy varied markedly between the 2 depths. Results further showed that utilization of the ocean's largest reduced carbon reservoir, (14)C-depleted, dissolved organic carbon, was negligible in this environment. This isotopic portrait of carbon assimilation by the in situ, free-living microbial community, integrated over >50,000 L of seawater, implies that recent, photosynthetic carbon is not always the major carbon source supporting microbial community production in the mesopelagic realm.

Effects of Short-Term Set-Aside Management Practices on Soil Microorganism and Enzyme Activity in China.

PubMed

Li, Guangyu; Wu, Cifang

2017-08-14

Set-aside farmland can effectively improve the self-rehabilitation of arable soil. Long-term set-asides however cannot satisfy provisionment, therefore the use of short-term set-asides to restore cultivated soil is a better option. Few studies have compared short-term set-aside patterns, and the effects of set-asides on soil microbial community and enzyme enzymes. We analyzed the bacterial structure, microbial biomass carbon/nitrogen and enzyme activity of farmland soil under different set-aside regimes in the Yellow River Delta of China. Bacterial alpha diversity was relatively lower under only irrigation, and farmyard manure applications showed clear advantages. Set-asides should consider their influence on soil organic carbon and nitrogen, which were correlated with microbial community structure. Nitrospira (0.47-1.67%), Acidobacteria Gp6 (8.26-15.91%) and unclassified Burkholderiales (1.50-2.81%) were significantly altered ( p < 0.01). Based on functions of these genera, some set-aside patterns led to a relative balance in nitrogen and carbon turnover. Partial treatments showed a deficiency in organic matter. In addition, farmyard manure may lead to the increased consumption of organic matter, with the exception of native plants set-asides. Conventional farming (control group) displayed a significant enzyme activity advantage. Set-aside management practices guided soil microbial communities to different states. Integrated soil microbiota and the content of carbon and nitrogen, native plants with farmyard manure showed an equilibrium state relatively, which would be helpful to improve land quality in the short-term.

Phylogenetic analysis of TCE-dechlorinating consortia enriched on a variety of electron donors.

PubMed

Freeborn, Ryan A; West, Kimberlee A; Bhupathiraju, Vishvesh K; Chauhan, Sadhana; Rahm, Brian G; Richardson, Ruth E; Alvarez-Cohen, Lisa

2005-11-01

Two rapidly fermented electron donors, lactate and methanol, and two slowly fermented electron donors, propionate and butyrate, were selected for enrichment studies to evaluate the characteristics of anaerobic microbial consortia that reductively dechlorinate TCE to ethene. Each electron donor enrichment subculture demonstrated the ability to dechlorinate TCE to ethene through several serial transfers. Microbial community analyses based upon 16S rDNA, including terminal restriction fragment length polymorphism (T-RFLP) and clone library/sequencing, were performed to assess major changes in microbial community structure associated with electron donors capable of stimulating reductive dechlorination. Results demonstrated that five phylogenic subgroups or genera of bacteria were present in all consortia, including Dehalococcoides sp., low G+C Gram-positives (mostly Clostridium and Eubacterium sp.), Bacteroides sp., Citrobacter sp., and delta Proteobacteria (mostly Desulfovibrio sp.). Phylogenetic association indicates that only minor shifts in the microbial community structure occurred between the four alternate electron donor enrichments and the parent consortium. Inconsistent detection of Dehalococcoides spp. in clone libraries and T-RFLP of enrichment subcultures was resolved using quantitative polymerase chain reaction (Q-PCR). Q-PCR with primers specific to Dehalococcoides 16S rDNA resulted in positive detection of this species in all enrichments. Our results suggest that TCE-dechlorinating consortia can be stably maintained on a variety of electron donors and that quantities of Dehalococcoides cells detected with Dehalococcoides specific 16S rDNA primer/probe sets do not necessarily correlate well with solvent degradation rates.

Application of UV-visible absorption spectroscopy combined with two-dimensional correlation for insight into DOM fractions from native halophyte soils in a larger estuarine delta.

PubMed

Wei, Huaibin; Yu, Huibin; Pan, Hongwei; Gao, Hongjie

2018-05-01

UV-visible absorption spectroscopy combined with principal component analysis (PCA) and two-dimensional correlation (2D correlation) is used to trace components of dissolved organic matter (DOM) extracted from soils in a larger estuarine delta and to investigate spatial variations of DOM fractions. Soil samples of different depths were collected from native halophyte soils along a saline gradient, i.e., Suaeda salsa Comm. (SSC), Chenopodium album Comm. (CAC), Phragmites australis Comm. (PAC), and Artemisia selengensis Comm. (ASC). Molecular weights of DOM within the SSC soil profile were the lowest, followed by the CAC, PAC, and ASC soil profiles. Humification degree of DOM within the ASC soil profile was the highest, followed by the PAC, SSC, and CAC soil profiles. DOM within the soil profiles mainly contained phenolic, carboxylic, microbial products, and aromatic and alkyl groups through the PCA, which presented the significant differentiation among the four native halophyte soil profiles. The 2D UV correlation spectra of DOM within the SSC soil profile indicated that the variations of the phenolic groups were the largest, followed by the carboxylic groups, microbial products, and humified organic materials according to the band changing order of 285 → 365 → 425 → 520 nm. The 2D UV correlation spectra of DOM within the CAC soil profiles determined that the decreasing order of the variations was phenolic groups > carboxylic groups > microbial products according the band changing order of 285 → 365 → 425 nm. The 2D UV correlation spectra of DOM within the PAC soil profile proved that the variations of the phenolic groups were larger than those of the carboxylic groups according to the band changing order of 285 → 365 nm. The 2D UV correlation spectra of DOM within the ASC soil profile demonstrated that the variations of the phenolic groups were larger than those of the other DOM fractions according to the broad cross-peak at 285/365-700 nm.

Global biogeography of microbial nitrogen-cycling traits in soil

NASA Astrophysics Data System (ADS)

Nelson, M.; Martiny, A.; Martiny, J. B. H.

2016-12-01

Microorganisms drive much of the Earth's nitrogen (N) cycle. However, despite their importance, many ecosystem models do not explicitly consider microbial communities and their functions. One obstacle in doing this is that we lack a complete understanding of the role that microbes play in biogeochemical processes. To address this challenge we used metagenomics to assess various N cycling traits of soil microorganisms in samples from around the globe. As measurable characteristics of an organism, traits can be used to quantify the role of microbes in ecosystem processes. Using 365 publically available soil metagenomes, we characterized the biogeography of microbial N cycling traits, defined as the abundance and composition of eight N pathways. We found strong biogeographic patterns in the frequency of N pathway traits; however, our models explained much less variation in taxonomic composition across sites. Focusing on individual N pathways, we identified the prominent taxa harboring these pathways. In addition, we found an unexpectedly high frequency of Bacteria encoding the dissimilatory nitrate reduction to ammonium (DNRA) pathway, a little studied N cycle process in soils. Finally, across all N pathways, phylogenetic analysis revealed that some phyla seem to be N cycle generalists (i.e delta-Proteobacteria), with the potential to carry out many N transformations, whereas others seem to be specialists (i.e. Cyanobacteria). As the most comprehensive map to date of the global distribution of microbial N traits, this study provides a springboard for further investigation of the prominent players in N cycling in soils. Overall, biogeographic patterns of traits can provide a foundation for understanding how microbial diversity impacts ecosystem processes and ultimately predicting how this diversity may shift in the face of global change.

Bacterial community structure and function shift along a successional series of tidal flats in the Yellow River Delta

PubMed Central

Lv, Xiaofei; Ma, Bin; Yu, Junbao; Chang, Scott X.; Xu, Jianming; Li, Yunzhao; Wang, Guangmei; Han, Guangxuan; Bo, Guan; Chu, Xiaojing

2016-01-01

Coastal ecosystems play significant ecological and economic roles but are threatened and facing decline. Microbes drive various biogeochemical processes in coastal ecosystems. Tidal flats are critical components of coastal ecosystems; however, the structure and function of microbial communities in tidal flats are poorly understood. Here we investigated the seasonal variations of bacterial communities along a tidal flat series (subtidal, intertidal and supratidal flats) and the factors affecting the variations. Bacterial community composition and diversity were analyzed over four seasons by 16S rRNA genes using the Ion Torrent PGM platform. Bacterial community composition differed significantly along the tidal flat series. Bacterial phylogenetic diversity increased while phylogenetic turnover decreased from subtidal to supratidal flats. Moreover, the bacterial community structure differed seasonally. Canonical correspondence analysis identified salinity as a major environmental factor structuring the microbial community in the sediment along the successional series. Meanwhile, temperature and nitrite concentration were major drivers of seasonal microbial changes. Despite major compositional shifts, nitrogen, methane and energy metabolisms predicted by PICRUSt were inhibited in the winter. Taken together, this study indicates that bacterial community structure changed along the successional tidal flat series and provides new insights on the characteristics of bacterial communities in coastal ecosystems. PMID:27824160

Bacterial community structure and function shift along a successional series of tidal flats in the Yellow River Delta.

PubMed

Lv, Xiaofei; Ma, Bin; Yu, Junbao; Chang, Scott X; Xu, Jianming; Li, Yunzhao; Wang, Guangmei; Han, Guangxuan; Bo, Guan; Chu, Xiaojing

2016-11-08

Coastal ecosystems play significant ecological and economic roles but are threatened and facing decline. Microbes drive various biogeochemical processes in coastal ecosystems. Tidal flats are critical components of coastal ecosystems; however, the structure and function of microbial communities in tidal flats are poorly understood. Here we investigated the seasonal variations of bacterial communities along a tidal flat series (subtidal, intertidal and supratidal flats) and the factors affecting the variations. Bacterial community composition and diversity were analyzed over four seasons by 16S rRNA genes using the Ion Torrent PGM platform. Bacterial community composition differed significantly along the tidal flat series. Bacterial phylogenetic diversity increased while phylogenetic turnover decreased from subtidal to supratidal flats. Moreover, the bacterial community structure differed seasonally. Canonical correspondence analysis identified salinity as a major environmental factor structuring the microbial community in the sediment along the successional series. Meanwhile, temperature and nitrite concentration were major drivers of seasonal microbial changes. Despite major compositional shifts, nitrogen, methane and energy metabolisms predicted by PICRUSt were inhibited in the winter. Taken together, this study indicates that bacterial community structure changed along the successional tidal flat series and provides new insights on the characteristics of bacterial communities in coastal ecosystems.

Proliferation of MISS-related microbial mats following the end-Permian mass extinction in terrestrial ecosystems: Evidence from the Lower Triassic of the Yiyang area, Henan Province, North China

NASA Astrophysics Data System (ADS)

Tu, Chenyi; Chen, Zhong-Qiang; Retallack, Gregory J.; Huang, Yuangeng; Fang, Yuheng

2016-03-01

Microbially induced sedimentary structures (MISSs) are commonly present in siliciclastic shallow marine settings following the end-Permian mass extinction, but have been rarely reported in the post-extinction terrestrial ecosystems. Here, we present six types of well-preserved MISSs from the upper Sunjiagou Formation and lower Liujiagou Formation of Induan (Early Triassic) age in the Yiyang area, Henan Province, North China. These MISSs include: polygonal sand cracks, worm-like structures, wrinkle structures, sponge pore fabrics, gas domes, and leveled ripple marks. Microanalysis shows that these MISSs are characterized by thin clayey laminae and filamentous mica grains arranged parallel to bedding plane as well as oriented matrix supported quartz grains, which are indicative of biogenic origin. Facies analysis suggests that the MISS-hosting sediments were deposited in a fluvial sedimentary system during the Early Triassic, including lake delta, riverbeds/point bars, and flood plain paleoenvironments. Abundant MISSs from Yiyang indicate that microbes also proliferated in terrestrial ecosystems in the aftermath of the Permian-Triassic (P-Tr) biocrisis, like they behaved in marine ecosystems. Microbial blooms, together with dramatic loss of metazoans, may reflect environmental stress and degradation of terrestrial ecosystems or arid climate immediately after the severe Permian-Triassic ecologic crisis.

The microbial community of a passive biochemical reactor treating arsenic, zinc, and sulfate-rich seepage.

PubMed

Baldwin, Susan Anne; Khoshnoodi, Maryam; Rezadehbashi, Maryam; Taupp, Marcus; Hallam, Steven; Mattes, Al; Sanei, Hamed

2015-01-01

Sulfidogenic biochemical reactors (BCRs) for metal removal that use complex organic carbon have been shown to be effective in laboratory studies, but their performance in the field is highly variable. Successful operation depends on the types of microorganisms supported by the organic matrix, and factors affecting the community composition are unknown. A molecular survey of a field-based BCR that had been removing zinc and arsenic for over 6 years revealed that the microbial community was dominated by methanogens related to Methanocorpusculum sp. and Methanosarcina sp., which co-occurred with Bacteroidetes environmental groups, such as Vadin HA17, in places where the organic matter was more degraded. The metabolic potential for organic matter decomposition by Ruminococcaceae was prevalent in samples with more pyrolyzable carbon. Rhodobium- and Hyphomicrobium-related genera within the Rhizobiales order that have the metabolic potential for dark hydrogen fermentation and methylotrophy, and unclassified Comamonadaceae were the dominant Proteobacteria. The unclassified environmental group Sh765B-TzT-29 was an important Delta-Proteobacteria group in this BCR that co-occurred with the dominant Rhizobiales operational taxonomic units. Organic matter degradation is one driver for shifting the microbial community composition and therefore possibly the performance of these bioreactors over time.

Conservation genetics of the endangered Iberian steppe plant Ferula loscosii (Apiaceae).

PubMed

Pérez-Collazos, E; Catalán, P

2008-07-01

Ferula loscosii (Lange) Willk (Apiaceae) is a threatened endemic species native to the Iberian Peninsula. The plant has a narrow and disjunct distribution in three regions, NE, C and SE Spain. Genetic variability within and among 11 populations from its natural distribution was assessed using allozymes. Intermediate levels of genetic diversity were detected in F. loscosii (P(99%) = 36.83; H(E) = 0.125; H(T) = 0.152). However, the highest genetic diversity (58%) corresponded to the threatened populations from SE and C Spain (H(T) = 0.169) rather than the more abundant and larger populations from NE Spain (Ebro valley) (H(T) = 0.122). Low to moderate levels of genetic structure were found among regional ranges (G(ST) = 0.134), and several statistical spatial correlation analyses corroborated substantial genetic differentiation among the three main regional ranges. However, no significant genetic differentiation was found among the NE Spain populations, except for a northernmost population that is geographically isolated. Outcrossing mating and other biological traits of the species could account for the maintenance of the present values of genetic diversity within populations. The existence of an ancestral late Tertiary wider distribution of the species in SE and C Spain, followed by the maintenance of different Quaternary refugia in these warmer areas, together with a more recent and rapid post-glacial expansion towards NE Spain, are arguments that could explain the low genetic variability and structure found in the Ebro valley and the higher levels of diversity in the southern Iberian populations.

The phylogeographical history of the Iberian steppe plant Ferula loscosii (Apiaceae): a test of the abundant-centre hypothesis.

PubMed

Pérez-Collazos, E; Sanchez-Gómez, P; Jiménez, F; Catalán, P

2009-03-01

The geology and climate of the western Mediterranean area were strongly modified during the Late Tertiary and the Quaternary. These geological and climatic events are thought to have induced changes in the population histories of plants in the Iberian Peninsula. However, fine-scale genetic spatial architecture across western Mediterranean steppe plant refugia has rarely been investigated. A population genetic analysis of amplified fragment length polymorphism variation was conducted on present-day, relict populations of Ferula loscosii (Apiaceae). This species exhibits high individual/population numbers in the middle Ebro river valley and, according to the hypothesis of an abundant-centre distribution, these northern populations might represent a long-standing/ancestral distribution centre. However, our results suggest that the decimated southern and central Iberian populations are more variable and structured than the northeastern ones, representing the likely vestiges of an ancestral distribution centre of the species. Phylogeographical analysis suggests that F. loscosii likely originated in southern Spain and then migrated towards the central and northeastern ranges, further supporting a Late Miocene southern-bound Mediterranean migratory way for its oriental steppe ancestors. In addition, different glacial-induced conditions affected the southern and northern steppe Iberian refugia during the Quaternary. The contrasting genetic homogeneity of the Ebro valley range populations compared to the southern Iberian ones possibly reflects more severe bottlenecks and subsequent genetic drift experienced by populations of the northern Iberia refugium during the Pleistocene, followed by successful postglacial expansion from only a few founder plants.

Irrigation efficiency and quality of irrigation return flows in the Ebro River Basin: an overview.

PubMed

Causapé, J; Quílez, D; Aragüés, R

2006-06-01

The review analysis of twenty two irrigation efficiency (IE) studies carried out in the Ebro River Basin shows that IE is low (average IE)(avg)(= 53%) in surface-irrigated areas with high-permeable and shallow soils inadequate for this irrigation system, high (IE)(avg)(= 79%) in surface-irrigated areas with appropriate soils for this system, and very high (IE)(avg)(= 94%) in modern, automated and well managed sprinkler-irrigated areas. The unitary salt (total dissolved solids) and nitrate loads exported in the irrigation return flows (IRF) of seven districts vary, depending on soil salinity and on irrigation and N fertilization management, between 3-16 Mg salt/ha x year and 23-195 kg NO)(3) (-)-N/ha x year, respectively. The lower nitrate loads exported from high IE districts show that a proper irrigation design and management is a key factor to reduce off-site nitrogen pollution. Although high IE's also reduce off-site salt pollution, the presence of salts in the soil or subsoil may induce relatively high salt loads (>or=14 Mg/ha x year) even in high IE districts. Two important constrains identified in our revision were the short duration of most surveys and the lack of standards for conducting irrigation efficiency and mass balance studies at the irrigation district level. These limitations {emphasize the need for the establishment of a permanent and standardized network of drainage monitoring stations for the appropriate off-site pollution diagnosis and control of irrigated agriculture.

Microbial community structure in three deep-sea carbonate crusts.

PubMed

Heijs, S K; Aloisi, G; Bouloubassi, I; Pancost, R D; Pierre, C; Sinninghe Damsté, J S; Gottschal, J C; van Elsas, J D; Forney, L J

2006-10-01

Carbonate crusts in marine environments can act as sinks for carbon dioxide. Therefore, understanding carbonate crust formation could be important for understanding global warming. In the present study, the microbial communities of three carbonate crust samples from deep-sea mud volcanoes in the eastern Mediterranean were characterized by sequencing 16S ribosomal RNA (rRNA) genes amplified from DNA directly retrieved from the samples. In combination with the mineralogical composition of the crusts and lipid analyses, sequence data were used to assess the possible role of prokaryotes in crust formation. Collectively, the obtained data showed the presence of highly diverse communities, which were distinct in each of the carbonate crusts studied. Bacterial 16S rRNA gene sequences were found in all crusts and the majority was classified as alpha-, gamma-, and delta- Proteobacteria. Interestingly, sequences of Proteobacteria related to Halomonas and Halovibrio sp., which can play an active role in carbonate mineral formation, were present in all crusts. Archaeal 16S rRNA gene sequences were retrieved from two of the crusts studied. Several of those were closely related to archaeal sequences of organisms that have previously been linked to the anaerobic oxidation of methane (AOM). However, the majority of archaeal sequences were not related to sequences of organisms known to be involved in AOM. In combination with the strongly negative delta 13C values of archaeal lipids, these results open the possibility that organisms with a role in AOM may be more diverse within the Archaea than previously suggested. Different communities found in the crusts could carry out similar processes that might play a role in carbonate crust formation.

Lipid biomarkers and carbon isotope signatures of a microbial (Beggiatoa) mat associated with gas hydrates in the gulf of Mexico.

PubMed

Zhang, Chuanlun L; Huang, Zhiyong; Cantu, James; Pancost, Richard D; Brigmon, Robin L; Lyons, Timothy W; Sassen, Roger

2005-04-01

White and orange mats are ubiquitous on surface sediments associated with gas hydrates and cold seeps in the Gulf of Mexico. The goal of this study was to determine the predominant pathways for carbon cycling within an orange mat in Green Canyon (GC) block GC 234 in the Gulf of Mexico. Our approach incorporated laser-scanning confocal microscopy, lipid biomarkers, stable carbon isotopes, and 16S rRNA gene sequencing. Confocal microscopy showed the predominance of filamentous microorganisms (4 to 5 mum in diameter) in the mat sample, which are characteristic of Beggiatoa. The phospholipid fatty acids extracted from the mat sample were dominated by 16:1omega7c/t (67%), 18:1omega7c (17%), and 16:0 (8%), which are consistent with lipid profiles of known sulfur-oxidizing bacteria, including Beggiatoa. These results are supported by the 16S rRNA gene analysis of the mat material, which yielded sequences that are all related to the vacuolated sulfur-oxidizing bacteria, including Beggiatoa, Thioploca, and Thiomargarita. The delta13C value of total biomass was -28.6 per thousand; those of individual fatty acids were -29.4 to -33.7 per thousand. These values suggested heterotrophic growth of Beggiatoa on organic substrates that may have delta13C values characteristic of crude oil or on their by-products from microbial degradation. This study demonstrated that integrating lipid biomarkers, stable isotopes, and molecular DNA could enhance our understanding of the metabolic functions of Beggiatoa mats in sulfide-rich marine sediments associated with gas hydrates in the Gulf of Mexico and other locations.

Shifts in microbial communities and soil nutrients along a fire chronosequence in Alaskan boreal forest

NASA Astrophysics Data System (ADS)

Treseder, K. K.; Mack, M. C.; Cross, A.

2002-12-01

Fires are important pathways of carbon loss from boreal forests, while microbial communities form equally important mechanisms for carbon accumulation between fires. We used a chronosequence in Alaska to examine shifts in microbial abundance and community composition in the several decades following severe fire, and then related these responses to soil characteristics in the same sites. The sites are located in upland forests near Delta Junction, Alaska, and represent stages at 3-, 15-, 45-, and over 100-yr following fire. Plant communities shift from herbaceous species in the youngest site, to deciduous shrubs and trees (e.g. Populus tremuloides and Salix) in the intermediate sites, to black spruce (Picea mariana) forest in the oldest site. Soil organic matter accumulated 2.8-fold over time. Potential mineralization was highest in the intermediate-aged sites, as was nitrification and standing pools of inorganic nitrogen. In contrast, inorganic phosphorus pools were highest immediately following fire, and then decreased nine-fold with age. As measured with BiologTM plates, bacterial diversity and abundance were greatest in the oldest sites. Plant roots in the intermediate-aged sites displayed higher colonization by ecto- and arbuscular mycorrhizal fungi than those in the youngest and oldest sites. Likewise, glomalin, a glycoprotein produced by arbuscular mycorrhizal fungi, was most abundant in the 14-yr old site. Glomalin is believed to contribute to the formation of water-stable aggregates in the soil. However, water stable aggregates were most abundant in the younger sites and did not follow the pattern of glomalin or arbuscular mycorrhizal abundance. Our results indicate that fire may maintain landscape-level diversity of microbial functional groups, and that carbon sequestration in microbial tissues (e.g. glomalin and fungal biomass) may be greatest in areas that have burned several decades earlier. Changes in soil structure may not be directly attributable to microbial activity.

Microbial community structures in high rate algae ponds for bioconversion of agricultural wastes from livestock industry for feed production.

PubMed

Mark Ibekwe, A; Murinda, Shelton E; Murry, Marcia A; Schwartz, Gregory; Lundquist, Trygve

2017-02-15

Dynamics of seasonal microbial community compositions in algae cultivation ponds are complex. However, there is very limited knowledge on bacterial communities that may play significant roles with algae in the bioconversion of manure nutrients to animal feed. In this study, water samples were collected during winter, spring, summer, and fall from the dairy lagoon effluent (DLE), high rate algae ponds (HRAP) that were fed with diluted DLE, and municipal waste water treatment plant (WWTP) effluent which was included as a comparison system for the analysis of total bacteria, Cyanobacteria, and microalgae communities using MiSeq Illumina sequencing targeting the 16S V4 rDNA region. The main objective was to examine dynamics in microbial community composition in the HRAP used for the production of algal biomass. DNA was extracted from the different sample types using three commercially available DNA extraction kits; MoBio Power water extraction kit, Zymo fungi/bacterial extraction kit, and MP Biomedicals FastDNA SPIN Kit. Permutational analysis of variance (PERMANOVA) using distance matrices on each variable showed significant differences (P=0.001) in beta-diversity based on sample source. Environmental variables such as hydraulic retention time (HRT; P<0.031), total N (P<0.002), total inorganic N (P<0.002), total P (P<0.002), alkalinity (P<0.002), pH (P<0.022), total suspended solid (TSS; P<0.003), and volatile suspended solids (VSS; P<0.002) significantly affected microbial communities in DLE, HRAP, and WWTP. Of the operational taxonomic units (OTUs) identified to phyla level, the dominant classes of bacteria identified were: Cyanobacteria, Alpha-, Beta-, Gamma-, Epsilon-, and Delta-proteobacteria, Bacteroidetes, Firmicutes, and Planctomycetes. Our data suggest that microbial communities were significantly affected in HRAP by different environmental variables, and care must be taken in extraction procedures when evaluating specific groups of microbial communities for specific functions. Published by Elsevier B.V.

Seasonal Variation in Soil Microbial Biomass, Bacterial Community Composition and Extracellular Enzyme Activity in Relation to Soil Respiration in a Northern Great Plains Grassland

NASA Astrophysics Data System (ADS)

Wilton, E.; Flanagan, L. B.

2014-12-01

Soil respiration rate is affected by seasonal changes in temperature and moisture, but is this a direct effect on soil metabolism or an indirect effect caused by changes in microbial biomass, bacterial community composition and substrate availability? In order to address this question, we compared continuous measurements of soil and plant CO2 exchange made with an automatic chamber system to analyses conducted on replicate soil samples collected on four dates during June-August. Microbial biomass was estimated from substrate-induced respiration rate, bacterial community composition was determined by 16S rRNA amplicon pyrosequencing, and β-1,4-N-acetylglucosaminidase (NAGase) and phenol oxidase enzyme activities were assayed fluorometrically or by absorbance measurements, respectively. Soil microbial biomass declined from June to August in strong correlation with a progressive decline in soil moisture during this time period. Soil bacterial species richness and alpha diversity showed no significant seasonal change. However, bacterial community composition showed a progressive shift over time as measured by Bray-Curtis dissimilarity. In particular, the change in community composition was associated with increasing relative abundance in the alpha and delta classes, and declining abundance of the beta and gamma classes of the Proteobacteria phylum during June-August. NAGase showed a progressive seasonal decline in potential activity that was correlated with microbial biomass and seasonal changes in soil moisture. In contrast, phenol oxidase showed highest potential activity in mid-July near the time of peak soil respiration and ecosystem photosynthesis, which may represent a time of high input of carbon exudates into the soil from plant roots. This input of exudates may stimulate the activity of phenol oxidase, a lignolytic enzyme involved in the breakdown of soil organic matter. These analyses indicated that seasonal change in soil respiration is a complex interaction between temporal changes in soil environmental factors and biological changes in the plant and microbial community that affect soil respiratory metabolism.

The socioeconomic impacts of the 2004-2008 drought in the Ebro river basin (Spain): A comprehensive and critical assessment

NASA Astrophysics Data System (ADS)

Hernández-Mora, N.; Garrido, A.; Gil, M.

2012-04-01

Water scarcity and drought are particularly relevant phenomena in Spain, a country with a Mediterranean climate and intense pressure on existing water resources. Spain's drought management policies have evolved significantly over time, and today Spain is at the forefront of drought management and mitigation planning in Europe. However, drought management policies are not informed by comprehensive or accurate estimations of the socioeconomic impacts of drought, nor by the efficiency or efficacy of drought management and mitigation measures. Previous studies attempting to estimate on the impacts of drought are based on direct economic users of water, primarily irrigated agriculture and hydropower. Existing analyses do not take into consideration the impacts on other economic sectors, such as recreational uses, which have a growing importance from a socioeconomic perspective. Additionally, the intangible or non-market impacts (on social welfare and wellbeing and on the environment) are not considered or measured, although they can be significant. This paper presents the mid-point results of the PREEMPT project (Policy relevant assessment of the socioeconomic effects of droughts and floods, ECHO - grant agreement # 070401/2010/579119/SUB/C4), an effort to provide a comprehensive assessment of the socioeconomic impacts of the 2004-2008 drought in the Ebro river basin. The study gathers existing information on direct and indirect economic impacts of drought on different sectors, completing existing gaps and comparing the results of studies that use different methodologies. It also estimates the welfare losses resulting from domestic water use restrictions and environmental degradation as a result of the drought using a value transfer approach from results derived from value choice experiments developed for other Spanish and international river basins. Results indicate that there is a clear need to improve our knowledge of the direct and indirect impacts of drought and to devise simple methodological and institutional approaches that allow for more effective and harmonized information gathering. We propose more accurate and policy relevant methodological alternatives. In terms of the welfare and environmental impacts of drought, we use different and complementary approaches and discuss possible limitations of existing methodologies. In spite of these limitations, we argue that an improved knowledge of the risks and costs of extreme meteorological events will help inform and improve decision making for effective and cost-efficient risk mitigation practices. Comparing our results of the Ebro drought 2004-2008 with previous academic and official analyses reveals significant biases, resulting from impacts overestimation and from omitting non-market water uses, indirect effects and intangible effects.

A family of conserved bacterial effectors inhibits salicylic acid-mediated basal immunity and promotes disease necrosis in plants.

PubMed

DebRoy, Sruti; Thilmony, Roger; Kwack, Yong-Bum; Nomura, Kinya; He, Sheng Yang

2004-06-29

Salicylic acid (SA)-mediated host immunity plays a central role in combating microbial pathogens in plants. Inactivation of SA-mediated immunity, therefore, would be a critical step in the evolution of a successful plant pathogen. It is known that mutations in conserved effector loci (CEL) in the plant pathogens Pseudomonas syringae (the Delta CEL mutation), Erwinia amylovora (the dspA/E mutation), and Pantoea stewartii subsp. stewartii (the wtsE mutation) exert particularly strong negative effects on bacterial virulence in their host plants by unknown mechanisms. We found that the loss of virulence in Delta CEL and dspA/E mutants was linked to their inability to suppress cell wall-based defenses and to cause normal disease necrosis in Arabidopsis and apple host plants. The Delta CEL mutant activated SA-dependent callose deposition in wild-type Arabidopsis but failed to elicit high levels of callose-associated defense in Arabidopsis plants blocked in SA accumulation or synthesis. This mutant also multiplied more aggressively in SA-deficient plants than in wild-type plants. The hopPtoM and avrE genes in the CEL of P. syringae were found to encode suppressors of this SA-dependent basal defense. The widespread conservation of the HopPtoM and AvrE families of effectors in various bacteria suggests that suppression of SA-dependent basal immunity and promotion of host cell death are important virulence strategies for bacterial infection of plants.

Comparison of Microbial Community Compositions of Injection and Production Well Samples in a Long-Term Water-Flooded Petroleum Reservoir

PubMed Central

Ren, Hong-Yan; Zhang, Xiao-Jun; Song, Zhi-yong; Rupert, Wieger; Gao, Guang-Jun; Guo, Sheng-xue; Zhao, Li-Ping

2011-01-01

Water flooding plays an important role in recovering oil from depleted petroleum reservoirs. Exactly how the microbial communities of production wells are affected by microorganisms introduced with injected water has previously not been adequately studied. Using denaturing gradient gel electrophoresis (DGGE) approach and 16S rRNA gene clone library analysis, the comparison of microbial communities is carried out between one injection water and two production waters collected from a working block of the water-flooded Gudao petroleum reservoir located in the Yellow River Delta. DGGE fingerprints showed that the similarities of the bacterial communities between the injection water and production waters were lower than between the two production waters. It was also observed that the archaeal composition among these three samples showed no significant difference. Analysis of the 16S rRNA gene clone libraries showed that the dominant groups within the injection water were Betaproteobacteria, Gammaproteobacteria and Methanomicrobia, while the dominant groups in the production waters were Gammaproteobacteria and Methanobacteria. Only 2 out of 54 bacterial operational taxonomic units (OTUs) and 5 out of 17 archaeal OTUs in the injection water were detected in the production waters, indicating that most of the microorganisms introduced by the injection water may not survive to be detected in the production waters. Additionally, there were 55.6% and 82.6% unique OTUs in the two production waters respectively, suggesting that each production well has its specific microbial composition, despite both wells being flooded with the same injection water. PMID:21858049

Effects of Short-Term Set-Aside Management Practices on Soil Microorganism and Enzyme Activity in China

PubMed Central

Wu, Cifang

2017-01-01

Set-aside farmland can effectively improve the self-rehabilitation of arable soil. Long-term set-asides however cannot satisfy provisionment, therefore the use of short-term set-asides to restore cultivated soil is a better option. Few studies have compared short-term set-aside patterns, and the effects of set-asides on soil microbial community and enzyme enzymes. We analyzed the bacterial structure, microbial biomass carbon/nitrogen and enzyme activity of farmland soil under different set-aside regimes in the Yellow River Delta of China. Bacterial alpha diversity was relatively lower under only irrigation, and farmyard manure applications showed clear advantages. Set-asides should consider their influence on soil organic carbon and nitrogen, which were correlated with microbial community structure. Nitrospira (0.47–1.67%), Acidobacteria Gp6 (8.26–15.91%) and unclassified Burkholderiales (1.50–2.81%) were significantly altered (p < 0.01). Based on functions of these genera, some set-aside patterns led to a relative balance in nitrogen and carbon turnover. Partial treatments showed a deficiency in organic matter. In addition, farmyard manure may lead to the increased consumption of organic matter, with the exception of native plants set-asides. Conventional farming (control group) displayed a significant enzyme activity advantage. Set-aside management practices guided soil microbial communities to different states. Integrated soil microbiota and the content of carbon and nitrogen, native plants with farmyard manure showed an equilibrium state relatively, which would be helpful to improve land quality in the short-term. PMID:28805737

Monitoring the effects of floods on submerged macrophytes in a large river.

PubMed

Ibáñez, Carles; Caiola, Nuno; Rovira, Albert; Real, Montserrat

2012-12-01

The lower Ebro River (Catalonia, Spain) has recently undergone a regime shift from a phytoplankton to a macrophyte-dominated system. Macrophytes started to spread at the end of the 1990s and since 2002 artificial floods (flushing flows) of short duration (1-2 days) are released from the Riba-roja dam once or twice a year in order to reduce macrophyte density. The aim of this study was to analyse the spatiotemporal trends of the submerged macrophytes in two stretches of the lower Ebro River using high-resolution hydroacoustic methods, in order to elucidate the effects of artificial floods and natural floods on its distribution and abundance. Results showed that the mean cover in the two studied stretches (Móra and Ginestar) was not reduced after a flushing flow (from 36.59% to 55.85% in Móra, and from 21.18% to 21.05% in Ginestar), but it was greatly reduced after the natural flood (down to 9.79% in Móra and 2.04% in Ginestar); surprisingly the cover increased in Móra after the artificial flood. In order to increase the efficiency of floods in controlling macrophyte spreading, the magnitude and frequency of them should largely increase, as well as the suspended sediment load, approaching as much as possible to the original flood pattern before dam construction. Hydroacoustic methods combined with geostatistics and interpolation in GIS can accurately monitor spatiotemporal trends of submerged macrophytes in large rivers. This is the first article to apply this monitoring system to submerged macrophytes in rivers. Copyright © 2012 Elsevier B.V. All rights reserved.

Reconstructing paleo-discharge from geometries of fluvial sinuous ridges on Earth and Mars

NASA Astrophysics Data System (ADS)

Hayden, A.; Lamb, M. P.; Mohrig, D. C.; Williams, R. M. E.; Myrow, P.; Ewing, R. C.; Cardenas, B. T.; Findlay, C. P., III

2017-12-01

Sinuous, branching networks of topographic ridges resembling river networks are common across Mars, and show promise for quantifying ancient martian surface hydrology. There are two leading formation mechanisms for ridges with a fluvial origin. Inverted channels are ridges that represent casts (e.g., due to lava fill) of relict river channel topography, whereas exhumed channel deposits are eroded remnants of a more extensive fluvial deposit, such as a channel belt. The inverted channel model is often assumed on Mars; however, we currently lack the ability to distinguish these ridge formation mechanisms, motivating the need for Earth-analog study. To address this issue, we studied the extensive networks of sinuous ridges in the Ebro basin of northeast Spain. The Ebro ridges stand 3-15 meters above the surrounding plains and are capped by a cliff-forming sandstone unit 3-10 meters thick and 20-50 meters in breadth. The caprock sandstone bodies contain bar-scale cross stratification, point-bar deposits, levee deposits, and lenses of mudstone, indicating that these are channel-belt deposits, rather than casts of channels formed from lateral channel migration, avulsion and reoccupation. In plan view, ridges form segments branching outward to the north resembling a distributary network; however, crosscutting relationships indicate that ridges cross at different stratigraphic levels. Thus, the apparent network in planview reflects non-uniform exhumation of channel-belt deposits from multiple stratigraphic positions, rather than an inverted coeval river network. As compared to the inverted channel model, exhumed fluvial deposits indicate persistent fluvial activity over geologic timescales, indicating the potential for long-lived surface water on ancient Mars.

Influence of salinity regime on the food-web structure and feeding ecology of fish species from Mediterranean coastal lagoons

NASA Astrophysics Data System (ADS)

Prado, Patricia; Vergara, Carolina; Caiola, Nuno; Ibáñez, Carles

2014-02-01

Dual δ15N and δ13C analyses and estimates of biomass were used to characterize the food webs of valuable fish species in three coastal lagoons of the Ebro Delta subjected to contrasting salinity regimes (polyhaline in the Tancada lagoon, mesohaline in the Encanyissada and oligohaline in the Clot lagoon). The δ13C signatures of the entire food-web including primary producers, sediment organic matter and consumers showed the most enriched values in the Tancada lagoon (from approx. -4.8‰ in sediments to -19.7‰ in fish) and the most depleted ones in the Clot lagoon (from approx. -11.4‰ in sediments to -25.4‰ in fish), consistent with dominant contributions from marine and continental sources, respectively. For δ15N, particularly high values were detected in the submersed vegetation (11.3 ± 0.3‰) together with more enriched sediment values at lower salinities (by approx. 2.5‰), suggesting that historical loadings of agricultural fertilizers are still retained by the systems and transmitted across trophic levels. Negative relationships between δ15N and salinity were also observed for the amphipod Gammarus aequicauda and the isopod Sphaeroma hookeri, suggesting some consumption of accumulated and resuspended detrital material. In contrast, δ15N signatures of fish showed lower values and inconsistent patterns, possibly because most species have a seasonal use of the lagoons. The biomass of fish species did not show a clear effect of the salinity regime (except for the mosquitofish Gambusia holbrookii), but results for mixing models suggest a diet shift from higher contribution of zooplankton size fractions in the Encanyissada (from 57 to 73%) to macrofauna at the other lagoons (from 40 to 67%). We suggest that alterations in salinity might modify the trophic dynamics of the systems from benthic to planktonic pathways, without large-scale differences in δ15N of fish suggestive of similar trophic levels.

Ostreopsis cf. ovata dynamics in the NW Mediterranean Sea in relation to biotic and abiotic factors.

PubMed

Carnicer, Olga; Guallar, Carles; Andree, Karl B; Diogène, Jorge; Fernández-Tejedor, Margarita

2015-11-01

An expansion of the distribution of Ostreopsis cf. ovata, a dinoflagellate which produces palytoxin-like compounds, has been reported in recent years. Economical and social interests are affected by blooms, as they are responsible for respiratory and skin problems in humans and may cause damage to marine organisms. In order to identify the most influential environmental factors that trigger proliferations of O. cf. ovata in the area of the adjacent shallow rocky coast of the Ebro Delta (NW Mediterranean Sea) a three-year survey was performed on the metaphytic microalgae community growing on the macrophytes Jania rubens and Corallina elongata. Small-size diatoms were more abundant than dinoflagellates; O. cf. ovata was identified as the only species present from the genus. Seawater temperature was the primary driver defining the ecological niche of O. cf. ovata. Freshwater and groundwater fluxes were more pronounced in southern than in northern sites, which may have resulted in a distinct O. cf. ovata spatial distribution, with the highest records of abundance and more frequent blooms in the north. In consequence, negative correlations between the abundance of O. cf. ovata and nitrate concentrations and significant positive correlation with salinity were observed. The temporal pattern of O. cf. ovata dynamics from mid-July to early-November is probably due to the fact that this species is observed only above a certain threshold temperature of seawater. Metaphytic cells of O. cf. ovata were smaller in the northern site than in the south, possibly as a result of an increase in cell division, coinciding with higher abundance, and this could be an indicator of favorable conditions. Toxicity in planktonic cells was negatively correlated with cell abundance in the water column, achieving maximum concentrations of 25pg. PLTX eqcell(-1). Copyright © 2015 Elsevier Inc. All rights reserved.

Reconciling the conservation of the purple swamphen (Porphyrio porphyrio) and its damage in Mediterranean rice fields through sustainable non-lethal techniques

PubMed Central

Piqué, Josep

2018-01-01

Resolving human–wildlife conflicts requires the assessment and implementation of appropriate technical measures that minimize negative impacts on socio-economic uses, including agriculture, and ensure the adequate protection of biological diversity. Rice paddies are widely distributed in the western Mediterranean region. Because of their high productivity, they can be a good habitat for waterbirds, including the purple swamphen Porphyrio porphyrio, particularly in areas where natural wetlands have been removed or reduced. As a result of its population growth, there have been increasing levels of damage caused by this species in rice fields due to stem-cutting and opening of bald patches in rice fields. With the aim of reducing damage, we evaluated the effectiveness of passive and active measures that would limit access to rice fields and deter/scare away purple swamphens in affected areas of the Ebro Delta (NE Spain). We selected the techniques according to the growth phase of rice and the activity of birds in the rice fields (perimeter fences and clearing vegetation around the rice plots during sprouting and growing phases, and falconry at maturation). There were positive results during the sprouting and growing phases thanks to fences and clearing vegetation, reducing the affected area by 37.8% between treatment and control plots. This would mean an economic savings of 18,550 €/year in compensation payments by regional administrations including the investment in implementing and maintaining passive protection measures. Active deterrence through falconry did not reduce the level of damage. The analysis of purple swamphen home range, activity centers (centroids), and the proportion of locations in and outside of rice fields showed no differences before and after dissuasive practices. These results were influenced by multiple concurrent factors including weather, the structural configuration of the rice plots and their location. In summary, we recommend the establishment of protection measures (perimeter fences + clearing vegetation around the rice plots) to reduce the level of damage. PMID:29707429

Patterns in wetland microbial community composition and functional gene repertoire associated with methane emissions

DOE Office of Scientific and Technical Information (OSTI.GOV)

He, Shaomei; Malfatti, Stephanie A.; McFarland, Jack W.

Wetland restoration on peat islands previously drained for agriculture has potential to reverse land subsidence and sequester atmospheric carbon dioxide as peat accretes. However, the emission of methane could potentially offset the greenhouse gas benefits of captured carbon. As microbial communities play a key role in governing wetland greenhouse gas fluxes, we are interested in how microbial community composition and functions are associated with wetland hydrology, biogeochemistry, and methane emission, which is critical to modeling the microbial component in wetland methane fluxes and to managing restoration projects for maximal carbon sequestration. Here, we couple sequence-based methods with biogeochemical and greenhousemore » gas measurements to interrogate microbial communities from a pilot-scale restored wetland in the Sacramento-San Joaquin Delta of California, revealing considerable spatial heterogeneity even within this relatively small site. A number of microbial populations and functions showed strong correlations with electron acceptor availability and methane production; some also showed a preference for association with plant roots. Marker gene phylogenies revealed a diversity of major methane-producing and -consuming populations and suggested novel diversity within methanotrophs. Methanogenic archaea were observed in all samples, as were nitrate-, sulfate-, and metal-reducing bacteria, indicating that no single terminal electron acceptor was preferred despite differences in energetic favorability and suggesting spatial microheterogeneity and microniches. Notably, methanogens were negatively correlated with nitrate-, sulfate-, and metal-reducing bacteria and were most abundant at sampling sites with high peat accretion and low electron acceptor availability, where methane production was highest. Wetlands are the largest nonanthropogenic source of atmospheric methane but also a key global carbon reservoir. Characterizing belowground microbial communities that mediate carbon cycling in wetlands is critical to accurately predicting their responses to changes in land management and climate. Here, we studied a restored wetland and revealed substantial spatial heterogeneity in biogeochemistry, methane production, and microbial communities, largely associated with the wetland hydraulic design. We observed patterns in microbial community composition and functions correlated with biogeochemistry and methane production, including diverse microorganisms involved in methane production and consumption. We found that methanogenesis gene abundance is inversely correlated with genes from pathways exploiting other electron acceptors, yet the ubiquitous presence of genes from all these pathways suggests that diverse electron acceptors contribute to the energetic balance of the ecosystem. These investigations represent an important step toward effective management of wetlands to reduce methane flux to the atmosphere and enhance belowground carbon storage.« less

Patterns in wetland microbial community composition and functional gene repertoire associated with methane emissions

DOE PAGES

He, Shaomei; Malfatti, Stephanie A.; McFarland, Jack W.; ...

2015-05-19

Wetland restoration on peat islands previously drained for agriculture has potential to reverse land subsidence and sequester atmospheric carbon dioxide as peat accretes. However, the emission of methane could potentially offset the greenhouse gas benefits of captured carbon. As microbial communities play a key role in governing wetland greenhouse gas fluxes, we are interested in how microbial community composition and functions are associated with wetland hydrology, biogeochemistry, and methane emission, which is critical to modeling the microbial component in wetland methane fluxes and to managing restoration projects for maximal carbon sequestration. Here, we couple sequence-based methods with biogeochemical and greenhousemore » gas measurements to interrogate microbial communities from a pilot-scale restored wetland in the Sacramento-San Joaquin Delta of California, revealing considerable spatial heterogeneity even within this relatively small site. A number of microbial populations and functions showed strong correlations with electron acceptor availability and methane production; some also showed a preference for association with plant roots. Marker gene phylogenies revealed a diversity of major methane-producing and -consuming populations and suggested novel diversity within methanotrophs. Methanogenic archaea were observed in all samples, as were nitrate-, sulfate-, and metal-reducing bacteria, indicating that no single terminal electron acceptor was preferred despite differences in energetic favorability and suggesting spatial microheterogeneity and microniches. Notably, methanogens were negatively correlated with nitrate-, sulfate-, and metal-reducing bacteria and were most abundant at sampling sites with high peat accretion and low electron acceptor availability, where methane production was highest. Wetlands are the largest nonanthropogenic source of atmospheric methane but also a key global carbon reservoir. Characterizing belowground microbial communities that mediate carbon cycling in wetlands is critical to accurately predicting their responses to changes in land management and climate. Here, we studied a restored wetland and revealed substantial spatial heterogeneity in biogeochemistry, methane production, and microbial communities, largely associated with the wetland hydraulic design. We observed patterns in microbial community composition and functions correlated with biogeochemistry and methane production, including diverse microorganisms involved in methane production and consumption. We found that methanogenesis gene abundance is inversely correlated with genes from pathways exploiting other electron acceptors, yet the ubiquitous presence of genes from all these pathways suggests that diverse electron acceptors contribute to the energetic balance of the ecosystem. These investigations represent an important step toward effective management of wetlands to reduce methane flux to the atmosphere and enhance belowground carbon storage.« less

Patterns in wetland microbial community composition and functional gene repertoire associated with methane emissions.

PubMed

He, Shaomei; Malfatti, Stephanie A; McFarland, Jack W; Anderson, Frank E; Pati, Amrita; Huntemann, Marcel; Tremblay, Julien; Glavina del Rio, Tijana; Waldrop, Mark P; Windham-Myers, Lisamarie; Tringe, Susannah G

2015-05-19

Wetland restoration on peat islands previously drained for agriculture has potential to reverse land subsidence and sequester atmospheric carbon dioxide as peat accretes. However, the emission of methane could potentially offset the greenhouse gas benefits of captured carbon. As microbial communities play a key role in governing wetland greenhouse gas fluxes, we are interested in how microbial community composition and functions are associated with wetland hydrology, biogeochemistry, and methane emission, which is critical to modeling the microbial component in wetland methane fluxes and to managing restoration projects for maximal carbon sequestration. Here, we couple sequence-based methods with biogeochemical and greenhouse gas measurements to interrogate microbial communities from a pilot-scale restored wetland in the Sacramento-San Joaquin Delta of California, revealing considerable spatial heterogeneity even within this relatively small site. A number of microbial populations and functions showed strong correlations with electron acceptor availability and methane production; some also showed a preference for association with plant roots. Marker gene phylogenies revealed a diversity of major methane-producing and -consuming populations and suggested novel diversity within methanotrophs. Methanogenic archaea were observed in all samples, as were nitrate-, sulfate-, and metal-reducing bacteria, indicating that no single terminal electron acceptor was preferred despite differences in energetic favorability and suggesting spatial microheterogeneity and microniches. Notably, methanogens were negatively correlated with nitrate-, sulfate-, and metal-reducing bacteria and were most abundant at sampling sites with high peat accretion and low electron acceptor availability, where methane production was highest. Wetlands are the largest nonanthropogenic source of atmospheric methane but also a key global carbon reservoir. Characterizing belowground microbial communities that mediate carbon cycling in wetlands is critical to accurately predicting their responses to changes in land management and climate. Here, we studied a restored wetland and revealed substantial spatial heterogeneity in biogeochemistry, methane production, and microbial communities, largely associated with the wetland hydraulic design. We observed patterns in microbial community composition and functions correlated with biogeochemistry and methane production, including diverse microorganisms involved in methane production and consumption. We found that methanogenesis gene abundance is inversely correlated with genes from pathways exploiting other electron acceptors, yet the ubiquitous presence of genes from all these pathways suggests that diverse electron acceptors contribute to the energetic balance of the ecosystem. These investigations represent an important step toward effective management of wetlands to reduce methane flux to the atmosphere and enhance belowground carbon storage. Copyright © 2015 He et al.

Upstream petroleum degradation of mangroves and intertidal shores: the Niger Delta experience.

PubMed

Osuji, Leo C; Erondu, Ebere S; Ogali, Regina E

2010-01-01

This article was inspired by a field reconnaissance survey of outcrops along the Nembe-Brass axis of the petroliferous Niger Delta. It reviews various tradeoffs of the impact of upstream petroleum (seismic and production) operations on the mangrove ecosystems in that region, the largest in Sub-Saharan Africa. Mangroves and intertidal shores are considered critical to the economic well-being of this region owing to the people's dual occupation in fishing and farming. The mangrove ecosystem provides a nutrient medium, which serves as a nursery and spawning ground for many fish species and other biota. Oil and gas activities might destroy these spawn areas, causing reduction in resource output and community pressure. Devegetation of the mangrove forest as a result of seismic delineation leaves the fragile soil exposed, unprotected, and susceptible to erosion. Again, loss of vegetation might discourage the natural role of plants in air purification (CO(2) utilization and O(2) production). The release of nutrients (organic N(2), NH(3), and NO$\\rm{{_{3};{-}}}$) and polyaromatic hydrocarbons (PAHs) to the environment, with the attendant increase in microbial load, increases biochemical O(2) demand (BOD) and depletes dissolved O(2) (DO) in H(2)O to a level that is beyond the tolerance limit of organisms. This anoxic situation leads to asphyxiation and subsequent fish kill in affected areas. In order of increasing vulnerability, the mangroves and intertidal shores of the Niger Delta fall under categories 8 to 10 on the environmental sensitivity index (ESI) scale, which predisposes the areas to serious long-term effects and clean-up complexity. Thus, there is need to monitor mangrove systems and shoreline changes in the areas of considerable seismic and production activities, especially in the coastal Niger Delta, where pipeline corrosion due to salt intrusion into the swampy environment and 'unsighted fingers' of sabotage have increased the prevalence of oil spills.

Source and migration of dissolved manganese in the Central Nile Delta Aquifer, Egypt

NASA Astrophysics Data System (ADS)

Bennett, P. C.; El Shishtawy, A. M.; Sharp, J. M.; Atwia, M. G.

2014-08-01

Dissolved metals in waters in shallow deltaic sediments are one of the world's major health problems, and a prime example is arsenic contamination in Bangladesh. The Central Nile Delta Aquifer, a drinking water source for more than 6 million people, can have high concentrations of dissolved manganese (Mn). Standard hydrochemical analyses coupled with sequential chemical extraction is used to identify the source of the Mn and to identify the probable cause of the contamination. Fifty-nine municipal supply wells were sampled and the results compared with published data for groundwaters and surface waters. Drill cuttings from 4 wells were collected and analyzed by sequential chemical extraction to test the hypothesized Mn-generating processes. The data from this research show that the Mn source is not deep saline water, microbial reduction of Mn oxides at the production depth, or leakage from irrigation drainage ditches. Instead, Mn associated with carbonate minerals in the surficial confining layer and transported down along the disturbed well annulus of the municipal supply wells is the likely source. This analysis provides a basis for future hydrogeological and contaminant transport modeling as well as remediation-modification of well completion practices and pumping schedules to mitigate the problem.

Mercury methylation, export and bioaccumulation in rice agriculture - model results from comparative and experimental studies in 3 regions of the California Delta, USA

NASA Astrophysics Data System (ADS)

Windham-Myers, L.; Fleck, J.; Eagles-Smith, C.; Ackerman, J.

2013-12-01

Seasonally flooded wetland ecosystems are often poised for mercury (Hg) methylation, thus becoming sources of methylmercury (MeHg) to in situ and downstream biota. The seasonal flooding associated with cultivation of rice (Oryza sativa) also generates MeHg, which may be stored in sediment or plants, bioaccumulated into fauna, degraded or exported, depending on hydrologic and seasonal conditions. While many U.S. waters are regulated for total Hg concentrations based on fish targets, California's Sacramento-San Joaquin Delta (Delta) will soon implement the first MeHg total maximum daily load (TMDL) control program. Since 2007, a conceptual model (DRERIP-MCM) and several ecosystem-level studies have been advanced to better understand the mechanisms behind Hg methylation, export and bioaccumulation within Delta wetlands, including rice agriculture. Three Delta rice-growing regions (Yolo Bypass, Cosumnes River, Central Delta) of varied soil characteristics, mining influences and hydrology, were monitored over full crop years to evaluate annual MeHg dynamics. In addition to fish tissue Hg accumulation, a broad suite of biogeochemical and hydrologic indices were assessed and compared between wetland types, seasons, and regions. In general, Delta rice fields were found to export MeHg during the post-harvest winter season, and promote MeHg uptake in fish and rice grain during the summer growing season. As described in a companion presentation (Eagles-Smith et al., this session), the experimental Cosumnes River study suggests that rice-derived dissolved organic carbon (DOC) fuels MeHg production and uptake into aquatic foodwebs. Explicit DRERIP-MCM linkages for the role of rice-DOC in MeHg production, export and bioaccumulation were verified across two summers (2011, 2012): rice biomass and root productivity influenced porewater DOC availability and microbial processes, which drove sediment MeHg production and flux to surface water, promoting MeHg bioaccumulation in fish. Linkages from plant biomass to fish Hg concentrations were less evident in non-agricultural wetlands (seasonal or permanent flooding), where aromatic DOC and physical controls (e.g. hydrology, photodemethylation) appeared to have a greater role. Winter rice straw management had no measurable impact on summer MeHg dynamics, but wetland data suggest that the inclusion of deepwater cells within fields may reduce MeHg exposure. As concern grows over MeHg concentrations in rice grains, research on cultivars and field management is expanding in China, but ecosystem-level studies remain rare. Broader global monitoring and research are needed to address these pathways of Hg exposure given the global expansion of rice agriculture and ongoing atmospheric Hg deposition. Dense root and canopy structure of California rice fields (Oryza sativa), August 2007

Stable isotopic biogeochemistry of carbon and nitrogen in a perennially ice-covered Antarctic lake.

PubMed

Wharton, R A; Lyons, W B; Des Marais, D J

1993-01-01

Lake Hoare (77 degrees 38' S, 162 degrees 53' E) is an amictic, oligotrophic, 34-m-deep, closed-basin lake in Taylor Valley, Antarctica. Its perennial ice cover minimizes wind-generated currents and reduces light penetration, as well as restricts sediment deposition into the lake and the exchange of atmospheric gases between the water column and the atmosphere. The biological community of Lake Hoare consists solely of microorganisms -- both planktonic populations and benthic microbial mats. Lake Hoare is one of several perennially ice-covered lakes in the McMurdo Dry Valleys that represent the end-member conditions of cold desert and saline lakes. The dry valley lakes provide a unique opportunity to examine lacustrine processes that operate at all latitudes, but under an extreme set of environmental conditions. The dry valley lakes may also offer a valuable record of catchment and global changes in the past and present. Furthermore, these lakes are modern-day equivalents of periglacial lakes that are likely to have been common during periods of glacial maxima at temperate latitudes. We have analyzed the dissolved inorganic carbon (DIC) of Lake Hoare for delta 13C and the organic matter of the sediments and sediment-trap material for delta 13C and delta 15N. The delta 13C of the DIC indicates that 12C is differentially removed in the shallow, oxic portions of the lake via photosynthesis. In the anoxic portions of the lake (27-34 m) a net addition of 12C to the DIC pool occurs via organic matter decomposition. The dissolution of CaCO3 at depth also contributes to the DIC pool. Except near the Canada Glacier where a substantial amount of allochthonous organic matter enters the lake, the organic carbon being deposited on the lake bottom at different sites is isotopically similar, suggesting an autochthonous source for the organic carbon. Preliminary inorganic carbon flux calculations suggest that a high percentage of the organic carbon fixed in the water column is remineralized as it falls through the water column. At nearby Lake Fryxell, the substantial (relative to Lake Hoare) glacial meltstream input overprints Fryxell's shallow-water biological delta 13C signal with delta 13C-depleted DIC. In contrast, Lake Hoare is not significantly affected by surface-water input and mixing, and therefore the delta 13C patterns observed arise primarily from biological dynamics within the lake. Organic matter in Lake Hoare is depleted in 15N, which we suggest is partially the result of the addition of relatively light inorganic nitrogen into the lake system from terrestrial sources.

Stable isotopic biogeochemistry of carbon and nitrogen in a perennially ice-covered Antarctic lake

NASA Technical Reports Server (NTRS)

Wharton, R. A. Jr; Lyons, W. B.; Des Marais, D. J.; Wharton RA, J. r. (Principal Investigator)

1993-01-01

Lake Hoare (77 degrees 38' S, 162 degrees 53' E) is an amictic, oligotrophic, 34-m-deep, closed-basin lake in Taylor Valley, Antarctica. Its perennial ice cover minimizes wind-generated currents and reduces light penetration, as well as restricts sediment deposition into the lake and the exchange of atmospheric gases between the water column and the atmosphere. The biological community of Lake Hoare consists solely of microorganisms -- both planktonic populations and benthic microbial mats. Lake Hoare is one of several perennially ice-covered lakes in the McMurdo Dry Valleys that represent the end-member conditions of cold desert and saline lakes. The dry valley lakes provide a unique opportunity to examine lacustrine processes that operate at all latitudes, but under an extreme set of environmental conditions. The dry valley lakes may also offer a valuable record of catchment and global changes in the past and present. Furthermore, these lakes are modern-day equivalents of periglacial lakes that are likely to have been common during periods of glacial maxima at temperate latitudes. We have analyzed the dissolved inorganic carbon (DIC) of Lake Hoare for delta 13C and the organic matter of the sediments and sediment-trap material for delta 13C and delta 15N. The delta 13C of the DIC indicates that 12C is differentially removed in the shallow, oxic portions of the lake via photosynthesis. In the anoxic portions of the lake (27-34 m) a net addition of 12C to the DIC pool occurs via organic matter decomposition. The dissolution of CaCO3 at depth also contributes to the DIC pool. Except near the Canada Glacier where a substantial amount of allochthonous organic matter enters the lake, the organic carbon being deposited on the lake bottom at different sites is isotopically similar, suggesting an autochthonous source for the organic carbon. Preliminary inorganic carbon flux calculations suggest that a high percentage of the organic carbon fixed in the water column is remineralized as it falls through the water column. At nearby Lake Fryxell, the substantial (relative to Lake Hoare) glacial meltstream input overprints Fryxell's shallow-water biological delta 13C signal with delta 13C-depleted DIC. In contrast, Lake Hoare is not significantly affected by surface-water input and mixing, and therefore the delta 13C patterns observed arise primarily from biological dynamics within the lake. Organic matter in Lake Hoare is depleted in 15N, which we suggest is partially the result of the addition of relatively light inorganic nitrogen into the lake system from terrestrial sources.

Dissolved Organic Carbon and Disinfection By-Product Precursor Release from Managed Peat Soils

USGS Publications Warehouse

Fleck, J.A.; Bossio, D.A.; Fujii, R.

2004-01-01

A wetland restoration demonstration project examined the effects of a permanently flooded wetland on subsidence of peat soils. The project, started in 1997, was done on Twitchell Island, in the Sacramento-San Joaquin Delta of California. Conversion of agricultural land to a wetland has changed many of the biogeochemical processes controlling dissolved organic carbon (DOC) release from the peat soils, relative to the previous land use. Dissolved organic C in delta waters is a concern because it reacts with chlorine, added as a disinfectant in municipal drinking waters, to form carcinogenic disinfection byproducts (DBPs), including trihalomethanes (THMs) and haloacetic acids (HAAs). This study explores the effects of peat soil biogeochemistry on DOC and DBP release under agricultural and wetland management. Results indicate that organic matter source, extent of soil organic matter decomposition, and decomposition pathways all are factors in THM formation. The results show that historical management practices dominate the release of DOC and THM precursors. However, within-site differences indicate that recent management decisions can contribute to changes in DOC quality and THM precursor formation. Not all aromatic forms of carbon are highly reactive and certain environmental conditions produce the specific carbon structures that form THMs. Both HAA and THM precursors are elevated in the DOC released under wetland conditions. The findings of this study emphasize the need to further investigate the roles of organic matter sources, microbial decomposition pathways, and decomposition status of soil organic matter in the release of DOC and DBP precursors from delta soils under varying land-use practices.

Monitoring trichloroethene remediation at an iron permeable reactive barrier using stable carbon isotopic analysis.

PubMed

VanStone, Nancy; Przepiora, Andrzej; Vogan, John; Lacrampe-Couloume, Georges; Powers, Brian; Perez, Ernesto; Mabury, Scott; Sherwood Lollar, Barbara

2005-08-01

Stable carbon isotopic analysis, in combination with compositional analysis, was used to evaluate the performance of an iron permeable reactive barrier (PRB) for the remediation of ground water contaminated with trichloroethene (TCE) at Spill Site 7 (SS7), F.E. Warren Air Force Base, Wyoming. Compositional data indicated that although the PRB appeared to be reducing TCE to concentrations below treatment goals within and immediately downgradient of the PRB, concentrations remained higher than expected at wells further downgradient (i.e. >9 m) of the PRB. At two wells downgradient of the PRB, TCE concentrations were comparable to upgradient values, and delta13C values of TCE at these wells were not significantly different than upgradient values. Since the process of sorption/desorption does not significantly fractionate carbon isotope values, this suggests that the TCE observed at these wells is desorbing from local aquifer materials and was present before the PRB was installed. In contrast, three other downgradient wells show significantly more enriched delta13C values compared to the upgradient mean. In addition, delta13C values for the degradation products of TCE, cis-dichloroethene and vinyl chloride, show fractionation patterns expected for the products of the reductive dechlorination of TCE. Since concentrations of both TCE and degradation products drop to below detection limit in wells within the PRB and directly below it, these downgradient chlorinated hydrocarbon concentrations are attributed to desorption from local aquifer material. The carbon isotope values indicate that this dissolved contaminant is subject to local degradation, likely due to in situ microbial activity.

Microbial communities mediating algal detritus turnover under anaerobic conditions

PubMed Central

Morrison, Jessica M.; Murphy, Chelsea L.; Baker, Kristina; Zamor, Richard M.; Nikolai, Steve J.; Wilder, Shawn; Elshahed, Mostafa S.

2017-01-01

Background Algae encompass a wide array of photosynthetic organisms that are ubiquitously distributed in aquatic and terrestrial habitats. Algal species often bloom in aquatic ecosystems, providing a significant autochthonous carbon input to the deeper anoxic layers in stratified water bodies. In addition, various algal species have been touted as promising candidates for anaerobic biogas production from biomass. Surprisingly, in spite of its ecological and economic relevance, the microbial community involved in algal detritus turnover under anaerobic conditions remains largely unexplored. Results Here, we characterized the microbial communities mediating the degradation of Chlorella vulgaris (Chlorophyta), Chara sp. strain IWP1 (Charophyceae), and kelp Ascophyllum nodosum (phylum Phaeophyceae), using sediments from an anaerobic spring (Zodlteone spring, OK; ZDT), sludge from a secondary digester in a local wastewater treatment plant (Stillwater, OK; WWT), and deeper anoxic layers from a seasonally stratified lake (Grand Lake O’ the Cherokees, OK; GL) as inoculum sources. Within all enrichments, the majority of algal biomass was metabolized within 13–16 weeks, and the process was accompanied by an increase in cell numbers and a decrease in community diversity. Community surveys based on the V4 region of the 16S rRNA gene identified different lineages belonging to the phyla Bacteroidetes, Proteobacteria (alpha, delta, gamma, and epsilon classes), Spirochaetes, and Firmicutes that were selectively abundant under various substrate and inoculum conditions. Within all kelp enrichments, the microbial communities structures at the conclusion of the experiment were highly similar regardless of the enrichment source, and were dominated by the genus Clostridium, or family Veillonellaceae within the Firmicutes. In all other enrichments the final microbial community was dependent on the inoculum source, rather than the type of algae utilized as substrate. Lineages enriched included the uncultured groups VadinBC27 and WCHB1-69 within the Bacteroidetes, genus Spirochaeta and the uncultured group SHA-4 within Spirochaetes, Ruminococcaceae, Lachnospiraceae, Yongiibacter, Geosporobacter, and Acidaminobacter within the Firmicutes, and genera Kluyvera, Pantoea, Edwardsiella and Aeromonas, and Buttiauxella within the Gamma-Proteobaceteria order Enterobacteriales. Conclusions Our results represent the first systematic survey of microbial communities mediating turnover of algal biomass under anaerobic conditions, and highlights the diversity of lineages putatively involved in the degradation process. PMID:28097050

Characterization of microbial associations with methanotrophic archaea and sulfate-reducing bacteria through statistical comparison of nested Magneto-FISH enrichments

DOE Office of Scientific and Technical Information (OSTI.GOV)

Trembath-Reichert, Elizabeth; Case, David H.; Orphan, Victoria J.

Methane seep systems along continental margins host diverse and dynamic microbial assemblages, sustained in large part through the microbially mediated process of sulfate-coupled Anaerobic Oxidation of Methane (AOM). This methanotrophic metabolism has been linked to consortia of anaerobic methane-oxidizing archaea (ANME) and sulfate-reducing bacteria (SRB). These two groups are the focus of numerous studies; however, less is known about the wide diversity of other seep associated microorganisms. We selected a hierarchical set of FISH probes targeting a range ofDeltaproteobacteriadiversity. Using the Magneto-FISH enrichment technique, we then magnetically captured CARD-FISH hybridized cells and their physically associated microorganisms from a methane seepmore » sediment incubation. DNA from nested Magneto-FISH experiments was analyzed using Illumina tag 16S rRNA gene sequencing (iTag). Enrichment success and potential bias with iTag was evaluated in the context of full-length 16S rRNA gene clone libraries, CARD-FISH, functional gene clone libraries, and iTag mock communities. We determined commonly used Earth Microbiome Project (EMP) iTAG primers introduced bias in some common methane seep microbial taxa that reduced the ability to directly compare OTU relative abundances within a sample, but comparison of relative abundances between samples (in nearly all cases) and whole community-based analyses were robust. The iTag dataset was subjected to statistical co-occurrence measures of the most abundant OTUs to determine which taxa in this dataset were most correlated across all samples. In addition, many non-canonical microbial partnerships were statistically significant in our co-occurrence network analysis, most of which were not recovered with conventional clone library sequencing, demonstrating the utility of combining Magneto-FISH and iTag sequencing methods for hypothesis generation of associations within complex microbial communities. Network analysis pointed to many co-occurrences containing putatively heterotrophic, candidate phyla such as OD1, Atribacteria, MBG-B, and Hyd24-12 and the potential for complex sulfur cycling involving Epsilon-, Delta-, and Gammaproteobacteria in methane seep ecosystems.« less

Characterization of microbial associations with methanotrophic archaea and sulfate-reducing bacteria through statistical comparison of nested Magneto-FISH enrichments

DOE PAGES

Trembath-Reichert, Elizabeth; Case, David H.; Orphan, Victoria J.

2016-04-18

Methane seep systems along continental margins host diverse and dynamic microbial assemblages, sustained in large part through the microbially mediated process of sulfate-coupled Anaerobic Oxidation of Methane (AOM). This methanotrophic metabolism has been linked to consortia of anaerobic methane-oxidizing archaea (ANME) and sulfate-reducing bacteria (SRB). These two groups are the focus of numerous studies; however, less is known about the wide diversity of other seep associated microorganisms. We selected a hierarchical set of FISH probes targeting a range ofDeltaproteobacteriadiversity. Using the Magneto-FISH enrichment technique, we then magnetically captured CARD-FISH hybridized cells and their physically associated microorganisms from a methane seepmore » sediment incubation. DNA from nested Magneto-FISH experiments was analyzed using Illumina tag 16S rRNA gene sequencing (iTag). Enrichment success and potential bias with iTag was evaluated in the context of full-length 16S rRNA gene clone libraries, CARD-FISH, functional gene clone libraries, and iTag mock communities. We determined commonly used Earth Microbiome Project (EMP) iTAG primers introduced bias in some common methane seep microbial taxa that reduced the ability to directly compare OTU relative abundances within a sample, but comparison of relative abundances between samples (in nearly all cases) and whole community-based analyses were robust. The iTag dataset was subjected to statistical co-occurrence measures of the most abundant OTUs to determine which taxa in this dataset were most correlated across all samples. In addition, many non-canonical microbial partnerships were statistically significant in our co-occurrence network analysis, most of which were not recovered with conventional clone library sequencing, demonstrating the utility of combining Magneto-FISH and iTag sequencing methods for hypothesis generation of associations within complex microbial communities. Network analysis pointed to many co-occurrences containing putatively heterotrophic, candidate phyla such as OD1, Atribacteria, MBG-B, and Hyd24-12 and the potential for complex sulfur cycling involving Epsilon-, Delta-, and Gammaproteobacteria in methane seep ecosystems.« less

Characterization of microbial associations with methanotrophic archaea and sulfate-reducing bacteria through statistical comparison of nested Magneto-FISH enrichments.

PubMed

Trembath-Reichert, Elizabeth; Case, David H; Orphan, Victoria J

2016-01-01

Methane seep systems along continental margins host diverse and dynamic microbial assemblages, sustained in large part through the microbially mediated process of sulfate-coupled Anaerobic Oxidation of Methane (AOM). This methanotrophic metabolism has been linked to consortia of anaerobic methane-oxidizing archaea (ANME) and sulfate-reducing bacteria (SRB). These two groups are the focus of numerous studies; however, less is known about the wide diversity of other seep associated microorganisms. We selected a hierarchical set of FISH probes targeting a range of Deltaproteobacteria diversity. Using the Magneto-FISH enrichment technique, we then magnetically captured CARD-FISH hybridized cells and their physically associated microorganisms from a methane seep sediment incubation. DNA from nested Magneto-FISH experiments was analyzed using Illumina tag 16S rRNA gene sequencing (iTag). Enrichment success and potential bias with iTag was evaluated in the context of full-length 16S rRNA gene clone libraries, CARD-FISH, functional gene clone libraries, and iTag mock communities. We determined commonly used Earth Microbiome Project (EMP) iTAG primers introduced bias in some common methane seep microbial taxa that reduced the ability to directly compare OTU relative abundances within a sample, but comparison of relative abundances between samples (in nearly all cases) and whole community-based analyses were robust. The iTag dataset was subjected to statistical co-occurrence measures of the most abundant OTUs to determine which taxa in this dataset were most correlated across all samples. Many non-canonical microbial partnerships were statistically significant in our co-occurrence network analysis, most of which were not recovered with conventional clone library sequencing, demonstrating the utility of combining Magneto-FISH and iTag sequencing methods for hypothesis generation of associations within complex microbial communities. Network analysis pointed to many co-occurrences containing putatively heterotrophic, candidate phyla such as OD1, Atribacteria, MBG-B, and Hyd24-12 and the potential for complex sulfur cycling involving Epsilon-, Delta-, and Gammaproteobacteria in methane seep ecosystems.

Succession in the petroleum reservoir microbiome through an oil field production lifecycle.

PubMed

Vigneron, Adrien; Alsop, Eric B; Lomans, Bartholomeus P; Kyrpides, Nikos C; Head, Ian M; Tsesmetzis, Nicolas

2017-09-01

Subsurface petroleum reservoirs are an important component of the deep biosphere where indigenous microorganisms live under extreme conditions and in isolation from the Earth's surface for millions of years. However, unlike the bulk of the deep biosphere, the petroleum reservoir deep biosphere is subject to extreme anthropogenic perturbation, with the introduction of new electron acceptors, donors and exogenous microbes during oil exploration and production. Despite the fundamental and practical significance of this perturbation, there has never been a systematic evaluation of the ecological changes that occur over the production lifetime of an active offshore petroleum production system. Analysis of the entire Halfdan oil field in the North Sea (32 producing wells in production for 1-15 years) using quantitative PCR, multigenic sequencing, comparative metagenomic and genomic bins reconstruction revealed systematic shifts in microbial community composition and metabolic potential, as well as changing ecological strategies in response to anthropogenic perturbation of the oil field ecosystem, related to length of time in production. The microbial communities were initially dominated by slow growing anaerobes such as members of the Thermotogales and Clostridiales adapted to living on hydrocarbons and complex refractory organic matter. However, as seawater and nitrate injection (used for secondary oil production) delivered oxidants, the microbial community composition progressively changed to fast growing opportunists such as members of the Deferribacteres, Delta-, Epsilon- and Gammaproteobacteria, with energetically more favorable metabolism (for example, nitrate reduction, H 2 S, sulfide and sulfur oxidation). This perturbation has profound consequences for understanding the microbial ecology of the system and is of considerable practical importance as it promotes detrimental processes such as reservoir souring and metal corrosion. These findings provide a new conceptual framework for understanding the petroleum reservoir biosphere and have consequences for developing strategies to manage microbiological problems in the oil industry.

Spatiotemporal analysis of microbial community dynamics during seasonal stratification events in a freshwater lake (Grand Lake, OK, USA)

PubMed Central

Morrison, Jessica M.; Baker, Kristina D.; Zamor, Richard M.; Nikolai, Steve; Elshahed, Mostafa S.

2017-01-01

Many freshwater lakes undergo seasonal stratification, where the formation of phototrophic blooms in the epilimnion and subsequent sedimentation induces hypoxia/anoxia in the thermocline and hypolimnion. This autochthonously produced biomass represents a major seasonal organic input that impacts the entire ecosystem. While the limnological aspects of this process are fairly well documented, relatively little is known regarding the microbial community response to such events, especially in the deeper anoxic layers of the water column. Here, we conducted a spatiotemporal survey of the particle-associated and free-living microbial communities in a warm monomictic freshwater reservoir (Grand Lake O’ the Cherokees) in northeastern Oklahoma, USA. Pre-stratification samples (March) harbored a homogeneous community throughout the oxygenated water column dominated by typical oligotrophic aquatic lineages (acl clade within Actinobacteria, and Flavobacterium within the Bacteroidetes). The onset of phototrophic blooming in June induced the progression of this baseline community into two distinct trajectories. Within the oxic epilimnion, samples were characterized by the propagation of phototrophic (Prochlorococcus), and heterotrophic (Planctomycetes, Verrucomicrobia, and Beta-Proteobacteria) lineages. Within the oxygen-deficient thermocline and hypolimnion, the sedimentation of surface biomass induced the development of a highly diverse community, with the enrichment of Chloroflexi, “Latescibacteria”, Armatimonadetes, and Delta-Proteobacteria in the particle-associated fraction, and Gemmatimonadetes and “Omnitrophica” in the free-living fraction. Our work documents the development of multiple spatially and temporally distinct niches during lake stratification, and supports the enrichment of multiple yet-uncultured and poorly characterized lineages in the lake’s deeper oxygen-deficient layers, an ecologically relevant microbial niche that is often overlooked in lakes diversity surveys. PMID:28493994

Turbid Bottom Waters and Ammonium-Rich Freshwaters as Nitrification Hotspots in a Large Urban Estuary (San Francisco Bay, CA)

NASA Astrophysics Data System (ADS)

Damashek, J.; Casciotti, K. L.; Francis, C.

2015-12-01

Nitrification is the link between reduced and oxidized forms of inorganic nitrogen, and is therefore a crucial step in the estuarine nitrogen cycle. Ammonia-oxidizing microorganisms catalyze the rate-limiting step of ammonia oxidation to nitrite and thus play key roles in the biogeochemical cycling nutrient-rich estuaries. Yet, few studies have measured nitrification rates in tandem with ammonia oxidizer functional gene (amoA) expression, abundance, and diversity in estuary waters. Here, we present a multi-year data set on the microbial ecology and biogeochemistry of nitrification in the San Francisco Bay-Delta, the largest estuary on the North American west coast, collected throughout all regions of the estuary from 2012 to 2014. Data on microbial community distributions use functional gene-based PCR assays to assess the diversity, abundance, and mRNA expression of ammonia oxidizers, while stable isotope tracer experiments were used to measure nitrification rates. Ammonia-oxidizing archaea (AOA) typically outnumbered ammonia-oxidizing bacteria (AOB) throughout the sampled gradient, though the relative abundance of AOB was often greater in brackish regions. mRNA expression of amoA appeared to largely track DNA abundance, but suggested only a fraction of the ammonia-oxidizing community was typically active. AOA were always numerically dominant in the Sacramento River, where average nitrification rates were highest, suggesting the AOA communities in this river are responsible for a relatively constant nitrification hotspot. Additionally, depth profiles of nitrification rates suggested high biogeochemical activity near the sediment-water interface in samples with abnormally high turbidity, indicating similar but transient nitrification hotspots in bottom waters containing resuspended sediments. This work increases our knowledge of the ecology and dynamics of ammonia oxidizers in the San Francisco Bay-Delta, with time series data allowing for the putative identification of regions of persistent or transiently high nitrogen cycling rates.

Atmospheric mercury pollution around a chlor-alkali plant in Flix (NE Spain): an integrated analysis.

PubMed

Esbrí, José M; López-Berdonces, Miguel Angel; Fernández-Calderón, Sergio; Higueras, Pablo; Díez, Sergi

2015-04-01

An integrated analysis approach has been applied to a mercury (Hg) case study on a chlor-alkali plant located in the Ebro River basin, close to the town of Flix (NE Spain). The study focused on atmospheric Hg and its incorporation in soils and lichens close to a mercury cell chlor-alkali plant (CAP), which has been operating since the end of the 19th century. Atmospheric Hg present in the area was characterized by means of seven total gaseous mercury (TGM) surveys carried out from 2007 to 2012. Surveys were carried out by car, walking, and at fixed locations, and covered an area of some 12 km(2) (including the CAP area, the village in which workers live, Flix town, and the Sebes Wildlife Reserve). Finally, an atmospheric Hg dispersion model was developed with ISC-AERMOD software validated by a lichen survey of the area. The results for the atmospheric compartment seem to indicate that the Flix area currently has the highest levels of Hg pollution in Spain on the basis of the extremely high average concentrations in the vicinity of the CAP (229 ng m(-3)). Moreover, the Hg(0) plume affects Flix town center to some extent, with values well above the international thresholds for residential areas. Wet and dry Hg deposition reached its highest values on the banks of the Ebro River, and this contributes to increased soil contamination (range 44-12,900 ng g(-1), average 775 ng g(-1)). A good fit was obtained between anomalous areas indicated by lichens and the dispersion model for 1 year.

Using an ensemble of regional climate models to assess climate change impacts on water scarcity in European river basins.

PubMed

Gampe, David; Nikulin, Grigory; Ludwig, Ralf

2016-12-15

Climate change will likely increase pressure on the water balances of Mediterranean basins due to decreasing precipitation and rising temperatures. To overcome the issue of data scarcity the hydrological relevant variables total runoff, surface evaporation, precipitation and air temperature are taken from climate model simulations. The ensemble applied in this study consists of 22 simulations, derived from different combinations of four General Circulation Models (GCMs) forcing different Regional Climate Models (RCMs) and two Representative Concentration Pathways (RCPs) at ~12km horizontal resolution provided through the EURO-CORDEX initiative. Four river basins (Adige, Ebro, Evrotas and Sava) are selected and climate change signals for the future period 2035-2065 as compared to the reference period 1981-2010 are investigated. Decreased runoff and evaporation indicate increased water scarcity over the Ebro and the Evrotas, as well as the southern parts of the Adige and the Sava, resulting from a temperature increase of 1-3° and precipitation decrease of up to 30%. Most severe changes are projected for the summer months indicating further pressure on the river basins already at least partly characterized by flow intermittency. The widely used Falkenmark indicator is presented and confirms this tendency and shows the necessity for spatially distributed analysis and high resolution projections. Related uncertainties are addressed by the means of a variance decomposition and model agreement to determine the robustness of the projections. The study highlights the importance of high resolution climate projections and represents a feasible approach to assess climate impacts on water scarcity also in regions that suffer from data scarcity. Copyright © 2016. Published by Elsevier B.V.

Breakup and reestablishment of the armour layer in a large gravel-bed river below dams: The lower Ebro

NASA Astrophysics Data System (ADS)

Vericat, Damia; Batalla, Ramon J.; Garcia, Celso

2006-06-01

Changes in armour layer during floods under supply limited conditions are little known. This paper describes the breakup and the reestablishment of the bed armour layer in the regulated gravel-bed Ebro River during a flooding period. The study was conducted over a 28-km study reach from 2002 to 2004. The surface, subsurface and bed load grain size distribution constitute the bases for the analysis of bed-armouring dynamics. The results indicate that the magnitude of floods controlled the degree of armouring of the river bed. The initial mean armouring ratio was 2.3, with maximum values reaching 4.4. Floods in the winter of 2002-2003 ( Q8) caused the breakup of the armour layer in several sections. This resulted in the erratic bed load pattern observed during the December 2002 flushing flow and in the increase in bed load transport during successive events. Most grain size classes were entrained and transported, causing river bed incision. The mean armouring ratio decreased to 1.9. In contrast, during low magnitude floods in 2003-2004 ( Q2), the coarsest fractions (64 mm) did not take part in the bed load while finer particles were winnowed, thus surface deposits coarsened. As a result, the armour layer was reestablished (i.e., the mean armouring ratio increased to 2.3), and the supply of subsurface sediment decreased. The supply and transport of bed material appear to be in balance in the river reach immediately below the dam. In contrast, the transport of medium and finer size classes in the downstream reaches was higher than their supply from upstream, a phenomenon that progressively reduced their availability in the river bed surface, hence the armour layer reworking.

Identification of compounds bound to suspended solids causing sub-lethal toxic effects in Daphnia magna. A field study on re-suspended particles during river floods in Ebro River.

PubMed

Rivetti, Claudia; Gómez-Canela, Cristian; Lacorte, Silvia; Díez, Sergi; Lázaro, Wilkinson L; Barata, Carlos

2015-04-01

Identifying chemicals causing adverse effects in organisms present in water remains a challenge in environmental risk assessment. This study aimed to assess and identify toxic compounds bound to suspended solids re-suspended during a prolonged period of flushing flows in the lower part of Ebro River (NE, Spain). This area is contaminated with high amounts of organochlorine and mercury sediment wastes. Chemical characterization of suspended material was performed by solid phase extraction using a battery of non-polar and polar solvents and analyzed by GC-MS/MS and LC-MS/MS. Mercury content was also determined for all sites. Post-exposure feeding rates of Daphnia magna were used to assess toxic effects of whole and filtered water samples and of re-constituted laboratory water with re-suspended solid fractions. Organochlorine and mercury residues in the water samples increased from upstream to downstream locations. Conversely, toxic effects were greater at the upstream site than downstream of the superfund Flix reservoir. A further analysis of the suspended solid fraction identified a toxic component eluted within the 80:20 methanol:water fraction. Characterization of that toxic component fraction by LC-MS/MS identified the phytotoxin anatoxin-a, whose residue levels were correlated with observed feeding inhibition responses. Further feeding inhibition assays conducted in the lab using anatoxin-a produced from Planktothrix agardhii, a filamentous cyanobacteria, confirmed field results. This study provides evidence that in real field situation measured contaminant residues do not always agree with toxic effects. Copyright © 2015 Elsevier B.V. All rights reserved.

River capture controlling changes in the drainage pattern and river slope

NASA Astrophysics Data System (ADS)

Castelltort, Xavier; Colombo, Ferran

2016-04-01

The crystalline block of Les Guilleries, in the northeast of the Iberian Peninsula, is part of the Hercynian basement over which Palaeogene materials of the Ebro basinwere deposited . This massif is affected by a family of basement fractures of NW-SE direction which continue under the Paleogene cover. This is evident in the areas of contact between the two units. One of these areas affected by fractures was used by the primitive river Ter to transition, through a process of river capture, from the crystal unit Guilleries, with a rectangular drainage pattern, toward the sedimentary cover of the Ebro basin, with a meander drainage pattern. The fractured material that the river Ter used to deepen against the dip of the layers is more evident due to it being rigid and resistant to erosion, the Sandstones of Folgueroles Fm. The use of fractures resulted in a course of the river Ter that can be divided into three subparallel reaches with a shape of Z, which can be described as structural pseudomeanders. The change in the drainage pattern of the river between its passage accross the basement and the cover can never be the product of a process of antecedence or superimposition as has been proclaimed earlier. The rectangular pattern fits the structure of the crystalline massif. The meandering pattern on the cover is due to the difficulty of flowing through the Sandstones of Folgueroles Fm, and to the subsequent pressure loss affecting the current of the river that moves upstream beyond the Bellmunt Anticline. Up to the point where the pattern meander is conserved, river slope is below 1%. Upstream, the river slope increases significantly due to the adaptation of the river to a new layout.

Wastewater treatment plants as a pathway for aquatic contamination by pharmaceuticals in the ebro river basin (northeast Spain).

PubMed

Gros, Meritxell; Petrović, Mira; Barceló, Damià

2007-08-01

The occurrence of 28 pharmaceuticals of major human consumption in Spain, including analgesics and anti-inflammatories, lipid regulators, psychiatric drugs, antibiotics, antihistamines, and beta-blockers, was assessed along the Ebro river basin, one of the biggest irrigated lands in that country. Target compounds were simultaneously analyzed by off-line solid-phase extraction, followed by liquid chromatography-tandem mass spectrometry. The loads of detected pharmaceuticals and their removal rates were studied in seven wastewater treatment plants (WWTPs) located in the main cities along the basin. Total loads ranged from 2 to 5 and from 0.5 to 1.5 g/d/1,000 inhabitants in influent and effluent wastewaters, respectively. High removal rates (60-90%) were achieved mainly for analgesics and anti-inflammatories. The other groups showed lower rates, ranging from 20 to 60%, and in most cases, the antiepileptic carbamazepine, macrolide antibiotics, and trimethoprim were not eliminated at all. Finally, the contribution of WWTP effluents to the presence of pharmaceuticals in receiving river waters was surveyed. In receiving surface water, the most ubiquitous compounds were the analgesics and anti-inflammatories ibuprofen, diclofenac, and naproxen; the lipid regulators bezafibrate and gemfibrozil; the antibiotics erythromycin, azithromycin, sulfamethoxazole, trimethoprim, and less frequently, ofloxacin; the antiepileptic carbamazepine; the antihistamine ranitidine; and the beta-blockers atenolol and sotalol. Although levels found in WWTP effluents ranged from low microg/L to high ng/L, pharmaceuticals in river waters occurred at levels at least one order of magnitude lower (low ng/L range) because of dilution effect. From the results obtained, it was proved that WWTP are hot spots of aquatic contamination concerning pharmaceuticals of human consumption.

Gypsum scarps and asymmetric fluvial valleys in evaporitic terrains. The role of river migration, landslides, karstification and lithology (Ebro River, NE Spain)

NASA Astrophysics Data System (ADS)

Guerrero, J.; Gutiérrez, F.

2017-11-01

Most of the Spanish fluvial systems excavated in Tertiary evaporitic gypsum formations show asymmetric valleys characterized by a stepped sequence of fluvial terraces on one valley flank and kilometric-long and > 100-m high prominent river scarp on the opposite side of the valley. Scarp undermining by the continuous preferential lateral migration of the river channel toward the valley margin leads to vertical to overhanging unstable slopes affected by a large number of slope failures that become the main geological hazard for villages located at the toe of the scarps. Detailed mapping of the gypsum scarps along the Ebro and Huerva Rivers gypsum scarps demonstrates that landslides and lateral spreading processes are predominant when claystones crop out at the base of the scarp, while rockfalls and topples become the dominant movement in those reaches where the rock mass is mainly constituted by evaporites. The dissolution of gypsum nodules, seasonal swelling and shrinking, and dispersion processes contribute to a decrease in the mechanical strength of claystones. The existence of dissolution-enlarged joints, sinkholes, and severely damaged buildings at the toe of the scarp from karstic subsidence demonstrates that the interstratal karstification of evaporites becomes a triggering factor in the instability of the rock mass. The genesis of asymmetric valleys and river gypsum scarps in the study area seem to be caused by the random migration of the river channel in the absence of lateral tilting related to tectonics or dissolution-induced subsidence. Once the scarp is developed, its preservation depends on the physicochemical properties of the substratum, the ratio between bedrock erosion and river incision rates, and climatic conditions that favour runoff erosion versus dissolution.

454-Pyrosequencing analysis of highly adapted azo dye-degrading microbial communities in a two-stage anaerobic-aerobic bioreactor treating textile effluent.

PubMed

Köchling, Thorsten; Ferraz, Antônio Djalma Nunes; Florencio, Lourdinha; Kato, Mario Takayuki; Gavazza, Sávia

2017-03-01

Azo dyes, which are widely used in the textile industry, exhibit significant toxic characteristics for the environment and the human population. Sequential anaerobic-aerobic reactor systems are efficient for the degradation of dyes and the mineralization of intermediate compounds; however, little is known about the composition of the microbial communities responsible for dye degradation in these systems. 454-Pyrosequencing of the 16S rRNA gene was employed to assess the bacterial biodiversity and composition of a two-stage (anaerobic-aerobic) pilot-scale reactor that treats effluent from a denim factory. The anaerobic reactor was inoculated with anaerobic sludge from a domestic sewage treatment plant. Due to the selective composition of the textile wastewater, after 210 days of operation, the anaerobic reactor was dominated by the single genus Clostridium, affiliated with the Firmicutes phylum. The aerobic biofilter harbored a diverse bacterial community. The most abundant phylum in the aerobic biofilter was Proteobacteria, which was primarily represented by the Gamma, Delta and Epsilon classes followed by Firmicutes and other phyla. Several bacterial genera were identified that most likely played an essential role in azo dye degradation in the investigated system.

Detection of pigments of halophilic endoliths from gypsum: Raman portable instrument and European Space Agency's prototype analysis

PubMed Central

Culka, Adam; Osterrothová, Kateřina; Hutchinson, Ian; Ingley, Richard; McHugh, Melissa; Oren, Aharon; Edwards, Howell G. M.; Jehlička, Jan

2014-01-01

A prototype instrument, under development at the University of Leicester, for the future European Space Agency (ESA) ExoMars mission, was used for the analysis of microbial pigments within a stratified gypsum crust from a hypersaline saltern evaporation pond at Eilat (Israel). Additionally, the same samples were analysed using a miniaturized Raman spectrometer, featuring the same 532 nm excitation. The differences in the position of the specific bands, attributed to carotenoid pigments from different coloured layers, were minor when analysed by the ESA prototype instrument; therefore, making it difficult to distinguish among the different pigments. The portable Delta Nu Advantage instrument allowed for the discrimination of microbial carotenoids from the orange/green and purple layers. The purpose of this study was to complement previous laboratory results with new data and experience with portable or handheld Raman systems, even with a dedicated prototype Raman system for the exploration of Mars. The latter is equipped with an excitation wavelength falling within the carotenoid polyene resonance region. The ESA prototype Raman instrument detected the carotenoid pigments (biomarkers) with ease, although further detailed distinctions among them were not achieved. PMID:25368354

Remote sensing and skywave digital communication from antarctica.

PubMed

Bergadà, Pau; Deumal, Marc; Vilella, Carles; Regué, Joan R; Altadill, David; Marsal, Santi

2009-01-01

This paper presents an overview of the research activities undertaken by La Salle and the Ebro Observatory in the field of remote sensing. On 2003 we started a research project with two main objectives: implement a long-haul oblique ionospheric sounder and transmit the data from remote sensors located at the Spanish Antarctic station Juan Carlos I to Spain. The paper focuses on a study of feasibility of two possible physical layer candidates for the skywave link between both points. A DS-SS based solution and an OFDM based solution are considered to achieve a reliable low-power low-rate communication system between Antarctica and Spain.

Remote Sensing and Skywave Digital Communication from Antarctica

PubMed Central

Bergadà, Pau; Deumal, Marc; Vilella, Carles; Regué, Joan R.; Altadill, David; Marsal, Santi

2009-01-01

This paper presents an overview of the research activities undertaken by La Salle and the Ebro Observatory in the field of remote sensing. On 2003 we started a research project with two main objectives: implement a long-haul oblique ionospheric sounder and transmit the data from remote sensors located at the Spanish Antarctic station Juan Carlos I to Spain. The paper focuses on a study of feasibility of two possible physical layer candidates for the skywave link between both points. A DS-SS based solution and an OFDM based solution are considered to achieve a reliable low-power low-rate communication system between Antarctica and Spain. PMID:22303166

Impact of biostimulated redox processes on metal dynamics in an iron-rich creek soil of a former uranium mining area.

PubMed

Burkhardt, Eva-Maria; Akob, Denise M; Bischoff, Sebastian; Sitte, Jana; Kostka, Joel E; Banerjee, Dipanjan; Scheinost, Andreas C; Küsel, Kirsten

2010-01-01

Understanding the dynamics of metals and radionuclides in soil environments is necessary for evaluating risks to pristine sites. An iron-rich creek soil of a former uranium-mining district (Ronneburg, Germany) showed high porewater concentrations of heavy metals and radionuclides. Thus, this study aims to (i) evaluate metal dynamics during terminal electron accepting processes (TEAPs) and (ii) characterize active microbial populations in biostimulated soil microcosms using a stable isotope probing (SIP) approach. In biostimulated soil slurries, concentrations of soluble Co, Ni, Zn, As, and unexpectedly U increased during Fe(III)-reduction. This suggests that there was a release of sorbed metals and As during reductive dissolution of Fe(III)-oxides. Subsequent sulfate-reduction was concurrent with a decrease of U, Co, Ni, and Zn concentrations. The relative contribution of U(IV) in the solid phase changed from 18.5 to 88.7% after incubation. The active Fe(III)-reducing population was dominated by delta-Proteobacteria (Geobacter) in (13)C-ethanol amended microcosms. A more diverse community was present in (13)C-lactate amended microcosms including taxa related to Acidobacteria, Firmicutes, delta-Proteobacteria, and beta-Proteobacteria. Our results suggested that biostimulated Fe(III)-reducing communities facilitated the release of metals including U to groundwater which is in contrast to other studies.

Modelling the work to be done by Escherichia coli to adapt to sudden temperature upshifts.

PubMed

Swinnen, I A M; Bernaerts, K; Van Impe, J F

2006-05-01

This paper studies and models the effect of the amplitude of a sudden temperature upshift DeltaT on the adaptation period of Escherichia coli, in terms of the work to be done by the cells during the subsequent lag phase (i.e., the product of growth rate mumax and lag phase duration lambda). Experimental data are obtained from bioreactor experiments with E. coli K12 MG1655. At a predetermined time instant during the exponential growth phase, a sudden temperature upshift is applied (no other environmental changes take place). The length of the (possibly) induced lag phase and the specific growth rate after the shift are quantified with the growth model of Baranyi and Roberts (Int J Food Microbiol 23, 1994, 277). Different models to describe the evolution of the product lambda x mumax as a function of the amplitude of the temperature shift are statistically compared. The evolution of lambda x mumax is influenced by the amplitude of the temperature shift DeltaT and by the normal physiological temperature range. As some cut-off is observed, the linear model with translation is preferred to describe this evolution. This work contributes to the characterization of microbial lag phenomena, in this case for E. coli K12 MG1655, in view of accurate predictive model building.

Isotopic apportionment of atmospheric and sewage nitrogen sources in two Connecticut rivers.

PubMed

Anisfeld, Shimon C; Barnes, Rebecca T; Altabet, Mark A; Wu, Taixing

2007-09-15

We used the dual isotope approach to identify sources of nitrate (NO3-) to two mixed land-use watersheds draining to Long Island Sound. In contrastto previous work, we found that sewage effluent NO3- was not consistently enriched in 15N. However, these effluents followed a characteristic denitrification line in delta15N-delta18O space, which could be used as a source signature. We used this signature, together with those of atmospheric deposition and microbial nitrification, to calculate ranges of possible contributions from each of these sources. These estimates are unaffected by any denitrification that may have taken place in soils or streams. Our estimates for atmospheric nitrogen only include unprocessed atmospheric deposition, i.e., NO3-that is not taken up in watershed soils before being delivered to rivers. Using this method, the contribution of atmospheric NO3- could be assessed with good precision and was found to be very low at all our sampling sites during baseflow. During a moderate storm event, atmospheric deposition contributed up to approximately 50% of stream NO3-, depending on the site, with the sites that experienced more stormflow showing a greater contribution of atmospheric NO3-. Our estimates of sewage contribution generally had too large a range to be useful.

Capability of MODIS radiance to analyze Iberian turbid plumes

NASA Astrophysics Data System (ADS)

Fernandez-Novoa, Diego; deCastro, Maite; Des, Marisela; Costoya, Xurxo; Mendes, Renato; Gomez-Gesteira, Moncho

2017-04-01

River plumes are formed near river mouths by freshwater and riverine materials. Therefore, the area influenced by freshwater (salinity plume) is usually negatively correlated with the area occupied by suspension and dissolved material (turbid plume). Suspended material results in a strong signal detected by satellite sensors whereas ocean clear waters have negligible contributions. Thus, remote sensing data, such as radiance obtained from Moderate Resolution Imaging Spectroradiometer (MODIS), are a very useful tool to analyze turbid plumes due to the high spatial and time resolution provided. Here, MODIS capability for characterizing similarities and differences among the most important Iberian plumes was assessed under the influence of their main forcing. Daily radiance data from MODIS-Aqua and MODIS-Terra satellite sensors were processed obtaining a resolution of 500 m. Two approaches are usually used for atmospheric correction treatments: Near-Infrared (NIR) bands and a combined algorithm using NIR and Short Wave Infrared (SWIR) bands. In the particular case of Iberian Peninsula plumes both methods offered similar results, although NIR bands present a lower associated error. MODIS allows working with several bands of normalized water-leaving radiances (nLw). Focusing in the resolution provided, nLw555 and 645 were the most appropriate because both provide the best coverage and correlation with river discharge. The nLw645 band was chosen because has a lower water penetration avoiding overestimations of turbidity caused by shallow seafloor areas and/or upwelling blooms. Daily data from both satellites were merged to enhance the robustness and precision of the study by increasing the number of available pixels. Results indicate that differences between radiance data from both satellites are negligible for Iberian plumes, justifying the merging. By last, each turbid limit, to delimit the respective plume from adjacent seawater, was obtained using two alternative methods. The first method evaluates the maximum correlation between river discharge and plume extension and the second one analyzes a histogram of radiance distribution for days characterized by a negligible plume and days showing a well-developed plume. The capability of MODIS radiance to delimit each river plume was tested by means of salinity data from Atlantic-Iberian Biscay Irish-Ocean Physics Reanalysis (IBI) database. Significant and negative correlations were found in the Atlantic Iberian plumes, showing the capability of MODIS to adequately track them. However, no correlation was found for Ebro River. This discrepancy is due to the presence of fresh water associated to other external sources (Rhone River), promoting low salinity values when Ebro discharge is low. In this particular case, the MODIS methodology is better to determine the river plume. In general, Atlantic Iberian plumes show a moderate or high dependence on river discharge, being wind a secondary forcing and tide the third one, although each plume presents particular features. On the other hand, Ebro plume has low dependence on river discharge and wind, and a negligible one on tide, being mainly driven for the Liguro-Provençal current.

Influence of an oyster reef on development of the microbial heterotrophic community of an estuarine biofilm.

PubMed

Nocker, Andreas; Lepo, Joe E; Snyder, Richard A

2004-11-01

We characterized microbial biofilm communities developed over two very closely located but distinct benthic habitats in the Pensacola Bay estuary using two complementary cultivation-independent molecular techniques. Biofilms were grown for 7 days on glass slides held in racks 10 to 15 cm over an oyster reef and an adjacent muddy sand bottom. Total biomass and optical densities of dried biofilms showed dramatic differences for oyster reef versus non-oyster reef biofilms. This study assessed whether the observed spatial variation was reflected in the heterotrophic prokaryotic species composition. Genomic biofilm DNA from both locations was isolated and served as a template to amplify 16S rRNA genes with universal eubacterial primers. Fluorescently labeled PCR products were analyzed by terminal restriction fragment length polymorphism, creating a genetic fingerprint of the composition of the microbial communities. Unlabeled PCR products were cloned in order to construct a clone library of 16S rRNA genes. Amplified ribosomal DNA restriction analysis was used to screen and define ribotypes. Partial sequences from unique ribotypes were compared with existing database entries to identify species and to construct phylogenetic trees representative of community structures. A pronounced difference in species richness and evenness was observed at the two sites. The biofilm community structure from the oyster reef setting had greater evenness and species richness than the one from the muddy sand bottom. The vast majority of the bacteria in the oyster reef biofilm were related to members of the gamma- and delta-subdivisions of Proteobacteria, the Cytophaga-Flavobacterium -Bacteroides cluster, and the phyla Planctomyces and Holophaga-Acidobacterium. The same groups were also present in the biofilm harvested at the muddy sand bottom, with the difference that nearly half of the community consisted of representatives of the Planctomyces phylum. Total species richness was estimated to be 417 for the oyster reef and 60 for the muddy sand bottom, with 10.5% of the total unique species identified being shared between habitats. The results suggest dramatic differences in habitat-specific microbial diversity that have implications for overall microbial diversity within estuaries.

Source, transport and fate of soil organic matter inferred from microbial biomarker lipids on the East Siberian Arctic Shelf

NASA Astrophysics Data System (ADS)

Bischoff, Juliane; Sparkes, Robert B.; Doğrul Selver, Ayça; Spencer, Robert G. M.; Gustafsson, Örjan; Semiletov, Igor P.; Dudarev, Oleg V.; Wagner, Dirk; Rivkina, Elizaveta; van Dongen, Bart E.; Talbot, Helen M.

2016-09-01

The Siberian Arctic contains a globally significant pool of organic carbon (OC) vulnerable to enhanced warming and subsequent release by both fluvial and coastal erosion processes. However, the rate of release, its behaviour in the Arctic Ocean and vulnerability to remineralisation is poorly understood. Here we combine new measurements of microbial biohopanoids including adenosylhopane, a lipid associated with soil microbial communities, with published glycerol dialkyl glycerol tetraethers (GDGTs) and bulk δ13C measurements to improve knowledge of the fate of OC transported to the East Siberian Arctic Shelf (ESAS). The microbial hopanoid-based soil OC proxy R'soil ranges from 0.0 to 0.8 across the ESAS, with highest values nearshore and decreases offshore. Across the shelf R'soil displays a negative linear correlation with bulk δ13C measurements (r2 = -0.73, p = < 0.001). When compared to the GDGT-based OC proxy, the branched and isoprenoid tetraether (BIT) index, a decoupled (non-linear) behaviour on the shelf was observed, particularly in the Buor-Khaya Bay, where the R'soil shows limited variation, whereas the BIT index shows a rapid decline moving away from the Lena River outflow channels. This reflects a balance between delivery and removal of OC from different sources. The good correlation between the hopanoid and bulk terrestrial signal suggests a broad range of hopanoid sources, both fluvial and via coastal erosion, whilst GDGTs appear to be primarily sourced via fluvial transport. Analysis of ice complex deposits (ICDs) revealed an average R'soil of 0.5 for the Lena Delta, equivalent to that of the Buor-Khaya Bay sediments, whilst ICDs from further east showed higher values (0.6-0.85). Although R'soil correlates more closely with bulk OC than the BIT, our understanding of the endmembers of this system is clearly still incomplete, with variations between the different East Siberian Arctic regions potentially reflecting differences in environmental conditions (e.g. temperature, pH), but other physiological controls on microbial bacteriohopanepolyol (BHP) production under psychrophilic conditions are as yet unknown.

Interdependence of soil and agricultural practice in a two - year phytoremediation in situ experiment

NASA Astrophysics Data System (ADS)

Nwaichi, Eucharia; Onyeike, Eugene; Frac, Magdalena; Iwo, Godknows

2016-04-01

A two - year plant - based soil clean - up was carried out at a crude oil spill agricultural site in a Niger Delta community in Nigeria to access further clean - up potentials of Cymbopogon citratus. Applied diagnostic ratios identified mixed petrogenic and pyrogenic sources as the main contributors of PAHs. Up to 90.8% sequestration was obtained for carcinogenic PAHs especially Benz (a) pyrene in a 2 - phase manner. A community level approach for assessing patterns of sole carbon source utilization by mixed microbial samples was employed to differentiate spatial and temporal changes in the soil microbial communities. In relation to pollution, soil conditioning notably decreased the lag times and showed mixed effects for colour development rates, maximum absorbance and the overall community pattern. For rate and utilization of different carbon substrates in BIOLOG wells, after day 3, in comparison to control soil communities, contamination with hydrocarbons and associated types increased amines and amides consumption. Consumption of carbohydrates in all polluted and unamended regimes decreased markedlyin comparison to those cultivated with C. citratus. We found a direct relationship between cellulose breakdown, measurable with B-glucosidase activity, organic matter content and CO2 realease within all soils in the present study. Organic amendment rendered most studied contaminants unavailable for uptake in preference to inorganic fertilizer in both study years. Generally, phytoremediation improved significantly the microbial community activity and thus would promote ecosystem restoration in relation to most patronised techniques. Supplementation with required nutrients, in a long - term design would present many ecological benefits. Keywords: Agricultural soils; Recovery; Hydrocarbon pollution; Ecology; Management practice.

Evaluation of microbial community composition in thermophilic methane-producing incubation of production water from a high-temperature oil reservoir.

PubMed

Zhou, Fang; Mbadinga, Serge Maurice; Liu, Jin-Feng; Gu, Ji-Dong; Mu, Bo-Zhong

2013-01-01

Investigation of petroleum microbes is fundamental for the development and utilization of oil reservoirs' microbial resources, and also provides great opportunities for research and development of bio-energy. Production water from a high-temperature oil reservoir was incubated anaerobically at 55 degrees C for more than 400 days without amendment of any nutrients. Over the time of incubation, about 1.6 mmol of methane and up to 107 micromol of hydrogen (H2) were detected in the headspace. Methane formation indicated that methanogenesis was likely the predominant process in spite of the presence of 23.4 mM SO4(2-) in the production water. Microbial community composition of the incubation was characterized by means of 16S rRNA gene clone libraries construction. Bacterial composition changed from Pseudomonales as the dominant population initially to Hydrogenophilales-related microorganisms affiliated to Petrobacter spp. closely. After 400 days of incubation, other bacterial members detected were related to Anareolineales, beta-, gamma-, and delta-Proteobacteria. The archaeal composition of the original production water was essentially composed of obligate acetoclastic methanogens of the genus Methanosaeta, but the incubation was predominantly composed of CO2-reducing methanogens of the genus Methanothermobacter and Crenarchaeotes-related microorganisms. Our results suggest that methanogenesis could be more active than expected in oil reservoir environments and methane formation from CO2-reduction played a significant role in the methanogenic community. This conclusion is consistent with the predominant role played by H2-oxidizing methanogens in the methanogenic conversion of organic matter in high-temperature petroleum reservoirs.

Direct cloning from enrichment cultures, a reliable strategy for isolation of complete operons and genes from microbial consortia.

PubMed

Entcheva, P; Liebl, W; Johann, A; Hartsch, T; Streit, W R

2001-01-01

Enrichment cultures of microbial consortia enable the diverse metabolic and catabolic activities of these populations to be studied on a molecular level and to be explored as potential sources for biotechnology processes. We have used a combined approach of enrichment culture and direct cloning to construct cosmid libraries with large (>30-kb) inserts from microbial consortia. Enrichment cultures were inoculated with samples from five environments, and high amounts of avidin were added to the cultures to favor growth of biotin-producing microbes. DNA was extracted from three of these enrichment cultures and used to construct cosmid libraries; each library consisted of between 6,000 and 35,000 clones, with an average insert size of 30 to 40 kb. The inserts contained a diverse population of genomic DNA fragments isolated from the consortia organisms. These three libraries were used to complement the Escherichia coli biotin auxotrophic strain ATCC 33767 Delta(bio-uvrB). Initial screens resulted in the isolation of seven different complementing cosmid clones, carrying biotin biosynthesis operons. Biotin biosynthesis capabilities and growth under defined conditions of four of these clones were studied. Biotin measured in the different culture supernatants ranged from 42 to 3,800 pg/ml/optical density unit. Sequencing the identified biotin synthesis genes revealed high similarities to bio operons from gram-negative bacteria. In addition, random sequencing identified other interesting open reading frames, as well as two operons, the histidine utilization operon (hut), and the cluster of genes involved in biosynthesis of molybdopterin cofactors in bacteria (moaABCDE).

Effects of Carbon in Flooded Paddy Soils: Implications for Microbial Activity and Arsenic Mobilization

NASA Astrophysics Data System (ADS)

Avancha, S.; Boye, K.

2014-12-01

In the Mekong delta in Cambodia, naturally occurring arsenic (originating from erosion in the Himalaya Mountains) in paddy soils is mobilized during the seasonal flooding. As a consequence, rice grown on the flooded soils may take up arsenic and expose people eating the rice to this carcinogenic substance. Microbial activity will enhance or decrease the mobilization of arsenic depending on their metabolic pathways. Among the microbes naturally residing in the soil are denitrifying bacteria, sulfate reducers, metal reducers (Fe, Mn), arsenic reducers, methanogens, and fermenters, whose activity varies based on the presence of oxygen. The purpose of the experiment was to assess how different amendments affect the microbial activity and the arsenic mobilization during the transition from aerobic to anaerobic metabolism after flooding of naturally contaminated Cambodian soil. In a batch experiment, we investigated how the relative metabolic rate of naturally occurring microbes could vary with different types of organic carbon. The experiment was designed to measure the effects of various sources of carbon (dried rice straw, charred rice straw, manure, and glucose) on the microbial activity and arsenic release in an arsenic-contaminated paddy soil from Cambodia under flooded conditions. All amendments were added based on the carbon content in order to add 0.036 g of carbon per vial. The soil was flooded with a 10mM TRIS buffer solution at pH 7.04 in airtight 25mL serum vials and kept at 25 °C. We prepared 14 replicates per treatment to sample both gas and solution. On each sampling point, the solution replicates were sampled destructively. The gas replicates continued on and were sampled for both gas and solution on the final day of the experiment. We measured pH, total arsenic, methane, carbon dioxide, and nitrous oxide at 8 hours, 1.5 days, 3.33 days, and 6.33 days from the start of the experiment.

Size really does matter: effects of filter fractionation on microbial community structure in a model oxygen minimum zone.

NASA Astrophysics Data System (ADS)

Torres Beltran, M.

2016-02-01

The Scientific Committee on Oceanographic Research (SCOR) Working Group 144 "Microbial Community Responses to Ocean Deoxygenation" workshop held in Vancouver, British Columbia in July 2014 had the primary objective of kick-starting the establishment of a minimal core of technologies, techniques and standard operating procedures (SOPs) to enable compatible process rate and multi-molecular data (DNA, RNA and protein) collection in marine oxygen minimum zones (OMZs) and other oxygen starved waters. Experimental activities conducted in Saanich Inlet, a seasonally anoxic fjord on Vancouver Island British Columbia, were designed to compare and cross-calibrate in situ sampling devices (McLane PPS system) with conventional bottle sampling and incubation methods. Bottle effects on microbial community composition, and activity were tested using different filter combinations and sample volumes to compare PPS/IPS (0.4 µm) versus Sterivex (0.22 µm) filtration methods with and without prefilters (2.7 µm). Resulting biomass was processed for small subunit ribosomal RNA gene sequencing across all three domains of life on the 454 platform followed by downstream community structure analyses. Significant community shifts occurred within and between filter fractions for in situ versus on-ship processed samples. For instance, the relative abundance of several bacterial phyla including Bacteroidetes, Delta and Gammaproteobacteria decreased five-fold on-ship when compared to in situ filtration. Similarly, experimental mesocosms showed similar community structure and activity to in situ filtered samples indicating the need to cross-calibrate incubations to constrain bottle effects. In addition, alpha and beta diversity significantly changed as function of filter size and volume, as well as the operational taxonomic units identified using indicator species analysis for each filter size. Our results provide statistical support that microbial community structure is systematically biased by filter fraction methods and highlight the need for establishing compatible techniques among researchers that facilitate comparative and reproducible science for the whole community.

In-Situ 13C-Labeling of Microbial Phospholipid Fatty Acids: Tracing Substrate Assimilation in a Petroleum-Contaminated Aquifer

NASA Astrophysics Data System (ADS)

Pombo, S. A.; Schroth, M. H.; Pelz, O.; Zeyer, J.

2001-12-01

Stable isotope analysis of phospholipid-derived fatty acids (PLFA) is a novel tool to trace assimilation of organic carbon in microbial communities. The 13C-labeling of biomarker fatty acids allows the identification of specific microbial populations involved in the metabolism of particular substrates, supplemented in 13C-labeled form. The goal of this study was to investigate the feasibility of 13C-labeling of PLFA and produced dissolved inorganic carbon (DIC) in a petroleum hydrocarbon (PHC)-contaminated aquifer during an in-situ experiment. To this end, we performed a single-well "push-pull" test in a monitoring well located in the denitrifying zone of a PHC-contaminated aquifer in Studen, Switzerland. During the experiment, we injected 500 L of site groundwater that was amended with 13C-labeled acetate (50% [2-13C]) and nitrate as reactants, and bromide as conservative tracer. Following the injection, we extracted a total of 1000 L of test solution/groundwater mixture after 4, 23 and 46 h from the same location. Concentrations of anions were measured in samples collected during the extraction. From these data, we computed first order rate coefficients for consumption of acetate (0.70 +/- 0.05 1/d) and nitrate (0.63 +/- 0.08 1/d). In addition, we extracted and identified PLFA, and measured \\delta13C values of PLFA and DIC. After only 4 h of incubation, we detected 13C-enrichment of certain PLFA in suspended biomass of extracted groundwater. After 46 h, we measured enrichments of up to 5000 per mil in certain PLFA (e.g. 16:1ω 7c), and up to 1500 per mil in the produced DIC. Our results demonstrate the feasibility of in-situ 13C-labeling of PLFA and DIC using push-pull tests to determine microbial activities in-situ in a natural ecosystem.

Succession in the petroleum reservoir microbiome through an oil field production lifecycle

DOE PAGES

Vigneron, Adrien; Alsop, Eric B.; Lomans, Bartholomeus P.; ...

2017-05-19

Subsurface petroleum reservoirs are an important component of the deep biosphere where indigenous microorganisms live under extreme conditions and in isolation from the Earth's surface for millions of years. However, unlike the bulk of the deep biosphere, the petroleum reservoir deep biosphere is subject to extreme anthropogenic perturbation, with the introduction of new electron acceptors, donors and exogenous microbes during oil exploration and production. Despite the fundamental and practical significance of this perturbation, there has never been a systematic evaluation of the ecological changes that occur over the production lifetime of an active offshore petroleum production system. Analysis of themore » entire Halfdan oil field in the North Sea (32 producing wells in production for 1-15 years) using quantitative PCR, multigenic sequencing, comparative metagenomic and genomic bins reconstruction revealed systematic shifts in microbial community composition and metabolic potential, as well as changing ecological strategies in response to anthropogenic perturbation of the oil field ecosystem, related to length of time in production. The microbial communities were initially dominated by slow growing anaerobes such as members of the Thermotogales and Clostridiales adapted to living on hydrocarbons and complex refractory organic matter. However, as seawater and nitrate injection (used for secondary oil production) delivered oxidants, the microbial community composition progressively changed to fast growing opportunists such as members of the Deferribacteres, Delta-, Epsilon- and Gammaproteobacteria, with energetically more favorable metabolism (for example, nitrate reduction, H2S, sulfide and sulfur oxidation). This perturbation has profound consequences for understanding the microbial ecology of the system and is of considerable practical importance as it promotes detrimental processes such as reservoir souring and metal corrosion. These findings provide a new conceptual framework for understanding the petroleum reservoir biosphere and have consequences for developing strategies to manage microbiological problems in the oil industry.« less

Succession in the petroleum reservoir microbiome through an oil field production lifecycle

DOE Office of Scientific and Technical Information (OSTI.GOV)

Vigneron, Adrien; Alsop, Eric B.; Lomans, Bartholomeus P.

Subsurface petroleum reservoirs are an important component of the deep biosphere where indigenous microorganisms live under extreme conditions and in isolation from the Earth's surface for millions of years. However, unlike the bulk of the deep biosphere, the petroleum reservoir deep biosphere is subject to extreme anthropogenic perturbation, with the introduction of new electron acceptors, donors and exogenous microbes during oil exploration and production. Despite the fundamental and practical significance of this perturbation, there has never been a systematic evaluation of the ecological changes that occur over the production lifetime of an active offshore petroleum production system. Analysis of themore » entire Halfdan oil field in the North Sea (32 producing wells in production for 1-15 years) using quantitative PCR, multigenic sequencing, comparative metagenomic and genomic bins reconstruction revealed systematic shifts in microbial community composition and metabolic potential, as well as changing ecological strategies in response to anthropogenic perturbation of the oil field ecosystem, related to length of time in production. The microbial communities were initially dominated by slow growing anaerobes such as members of the Thermotogales and Clostridiales adapted to living on hydrocarbons and complex refractory organic matter. However, as seawater and nitrate injection (used for secondary oil production) delivered oxidants, the microbial community composition progressively changed to fast growing opportunists such as members of the Deferribacteres, Delta-, Epsilon- and Gammaproteobacteria, with energetically more favorable metabolism (for example, nitrate reduction, H2S, sulfide and sulfur oxidation). This perturbation has profound consequences for understanding the microbial ecology of the system and is of considerable practical importance as it promotes detrimental processes such as reservoir souring and metal corrosion. These findings provide a new conceptual framework for understanding the petroleum reservoir biosphere and have consequences for developing strategies to manage microbiological problems in the oil industry.« less

Characterization of Streptomyces isolates causing colour changes of mural paintings in ancient Egyptian tombs.

PubMed

Abdel-Haliem, M E F; Sakr, A A; Ali, M F; Ghaly, M F; Sohlenkamp, C

2013-08-25

Paintings in ancient Egyptian tombs often suffer colour changes due to microbial growth and colonization. Streptomyces strains were isolated from mural paintings of Tell Basta and Tanis tombs (East of Nile Delta, Egypt) and were identified using biochemical and molecular methods. The16S rDNA sequences data indicated that isolated strains were closely related to S. coelicolor, S. albidofuscus, S. ambofaciens, S. canarius, S. parvullus, S. corchorusii, S. albidofuscus and S. nigrifaciens. It could be shown that Streptomyces strains are involved on a large scale in the colour changes of paintings and stone support by producing a wide range of metabolites such as acids (oxalic, citric and sulphuric acids), biopigments of melanin, carotenoids, and hydrogen sulphide. Copyright © 2013 Elsevier GmbH. All rights reserved.

Environmental migratory patterns and stock identification of Mugil cephalus in the Spanish Mediterranean Sea, by means of otolith microchemistry

NASA Astrophysics Data System (ADS)

Callicó Fortunato, Roberta; Reguera Galán, Aida; García Alonso, Ignacio; Volpedo, Alejandra; Benedito Durà, Vicent

2017-03-01

The Flathead grey mullet, Mugil cephalus is the most globally-distributed Mugilidae species and its migrations and movement patterns have been studied globally but not in-depth in the Mediterranean region. Thus, the present study aimed: (1) to identify migratory patterns throughout the life-history of the Mugil cephalus in different Spanish Mediterranean wetlands, and (2) to study the presence of potential fish stocks of the species in the region, by means of otolith microchemistry. Specimens (n = 43) were obtained in three wetlands: Parque Natural Delta del Ebro (DE), a stratified estuary; Parque Natural de l'Albufera de Valencia (AV), a Mediterranean lake; and Parque Natural Salinas de Santa Pola (SP), a coastal salt marsh. Otolith microchemistry was studied using LA-ICP-MS (chronological variation of Sr:Ca and Ba:Ca ratios). The analysis of lifetime profiles revealed four behavioral patterns: Type I: most frequent use of estuarine environments (estuarine resident); Type II: freshwater behaviour during early life history, moving though estuarine to marine waters at the end of their profile (freshwater migrant); Type III: estuarine water use in early life stages moving then towards sea waters (estuarine migrant); and Type IV: sea/high salinity water habitat use during their entire lifetime (seawater resident). A Canonical Discriminant Analysis, using Sr:Ca and Ba:Ca ratios from core and edge as variables, assigned individuals to the detected patterns with high accuracy (Type I > 95%; Type II and Type III > 83%; and Type IV > 88%). Moreover, two potential fish stocks were identified by the analysis of Sr:Ca otoliths-edge ratios: one in the Valencian Gulf, DE-AV areas presented similar ratios, and the other in the southern location, SP (higher Sr:Ca values). Mugil cephalus presented diverse life patterns on the Valencian Community Mediterranean coast. Different strategies could be identified by the used methodology: some particular to an area (Type IV-SP); others shared among areas, changing environments in different stages of their life. The presence of different fish stocks could be influenced by a mesoscale current phenomenon observed in the region associated with the Balearic front.

Ostreopsis cf. ovata dynamics in the NW Mediterranean Sea in relation to biotic and abiotic factors

DOE Office of Scientific and Technical Information (OSTI.GOV)

Carnicer, Olga; Guallar, Carles; IFREMER, DYNECO-PELAGOS Centre de Brest, Pointe du Diable BP70, 29280 Plouzane

2015-11-15

An expansion of the distribution of Ostreopsis cf. ovata, a dinoflagellate which produces palytoxin-like compounds, has been reported in recent years. Economical and social interests are affected by blooms, as they are responsible for respiratory and skin problems in humans and may cause damage to marine organisms. In order to identify the most influential environmental factors that trigger proliferations of O. cf. ovata in the area of the adjacent shallow rocky coast of the Ebro Delta (NW Mediterranean Sea) a three-year survey was performed on the metaphytic microalgae community growing on the macrophytes Jania rubens and Corallina elongata. Small-size diatomsmore » were more abundant than dinoflagellates; O. cf. ovata was identified as the only species present from the genus. Seawater temperature was the primary driver defining the ecological niche of O. cf. ovata. Freshwater and groundwater fluxes were more pronounced in southern than in northern sites, which may have resulted in a distinct O. cf. ovata spatial distribution, with the highest records of abundance and more frequent blooms in the north. In consequence, negative correlations between the abundance of O. cf. ovata and nitrate concentrations and significant positive correlation with salinity were observed. The temporal pattern of O. cf. ovata dynamics from mid-July to early-November is probably due to the fact that this species is observed only above a certain threshold temperature of seawater. Metaphytic cells of O. cf. ovata were smaller in the northern site than in the south, possibly as a result of an increase in cell division, coinciding with higher abundance, and this could be an indicator of favorable conditions. Toxicity in planktonic cells was negatively correlated with cell abundance in the water column, achieving maximum concentrations of 25 pg. PLTX eq cell{sup −1}. - Highlights: • Presence of a single Ostreopsis genotype in confirmed through qPCR. • Temperature confirmed as the most important parameter affecting its distribution. • Salinity positively correlated with Ostreopsis cf. ovata abundance. • Ostreopsis cf. ovata has a restricted ecological niche. • Toxicity in Ostreopsis planktonic cells negatively correlated with cell abundance.« less

Detection of pigments of halophilic endoliths from gypsum: Raman portable instrument and European Space Agency's prototype analysis.

PubMed

Culka, Adam; Osterrothová, Kateřina; Hutchinson, Ian; Ingley, Richard; McHugh, Melissa; Oren, Aharon; Edwards, Howell G M; Jehlička, Jan

2014-12-13

A prototype instrument, under development at the University of Leicester, for the future European Space Agency (ESA) ExoMars mission, was used for the analysis of microbial pigments within a stratified gypsum crust from a hypersaline saltern evaporation pond at Eilat (Israel). Additionally, the same samples were analysed using a miniaturized Raman spectrometer, featuring the same 532 nm excitation. The differences in the position of the specific bands, attributed to carotenoid pigments from different coloured layers, were minor when analysed by the ESA prototype instrument; therefore, making it difficult to distinguish among the different pigments. The portable Delta Nu Advantage instrument allowed for the discrimination of microbial carotenoids from the orange/green and purple layers. The purpose of this study was to complement previous laboratory results with new data and experience with portable or handheld Raman systems, even with a dedicated prototype Raman system for the exploration of Mars. The latter is equipped with an excitation wavelength falling within the carotenoid polyene resonance region. The ESA prototype Raman instrument detected the carotenoid pigments (biomarkers) with ease, although further detailed distinctions among them were not achieved. © 2014 The Author(s) Published by the Royal Society. All rights reserved.

Meltwater export of prokaryotic cells from the Greenland ice sheet.

PubMed

Cameron, Karen A; Stibal, Marek; Hawkings, Jon R; Mikkelsen, Andreas B; Telling, Jon; Kohler, Tyler J; Gözdereliler, Erkin; Zarsky, Jakub D; Wadham, Jemma L; Jacobsen, Carsten S

2017-02-01

Microorganisms are flushed from the Greenland Ice Sheet (GrIS) where they may contribute towards the nutrient cycling and community compositions of downstream ecosystems. We investigate meltwater microbial assemblages as they exit the GrIS from a large outlet glacier, and as they enter a downstream river delta during the record melt year of 2012. Prokaryotic abundance, flux and community composition was studied, and factors affecting community structures were statistically considered. The mean concentration of cells exiting the ice sheet was 8.30 × 10 4 cells mL -1 and we estimate that ∼1.02 × 10 21 cells were transported to the downstream fjord in 2012, equivalent to 30.95 Mg of carbon. Prokaryotic microbial assemblages were dominated by Proteobacteria, Bacteroidetes, and Actinobacteria. Cell concentrations and community compositions were stable throughout the sample period, and were statistically similar at both sample sites. Based on our observations, we argue that the subglacial environment is the primary source of the river-transported microbiota, and that cell export from the GrIS is dependent on discharge. We hypothesise that the release of subglacial microbiota to downstream ecosystems will increase as freshwater flux from the GrIS rises in a warming world. © 2016 Society for Applied Microbiology and John Wiley & Sons Ltd.

Microbial diversity in a submarine carbonate edifice from the serpentinizing hydrothermal system of the Prony Bay (New Caledonia) over a 6-year period.

PubMed

Postec, Anne; Quéméneur, Marianne; Bes, Méline; Mei, Nan; Benaïssa, Fatma; Payri, Claude; Pelletier, Bernard; Monnin, Christophe; Guentas-Dombrowsky, Linda; Ollivier, Bernard; Gérard, Emmanuelle; Pisapia, Céline; Gérard, Martine; Ménez, Bénédicte; Erauso, Gaël

2015-01-01

Active carbonate chimneys from the shallow marine serpentinizing Prony Hydrothermal Field were sampled 3 times over a 6 years period at site ST09. Archaeal and bacterial communities composition was investigated using PCR-based methods (clone libraries, Denaturating Gel Gradient Electrophoresis, quantitative PCR) targeting 16S rRNA genes, methyl coenzyme M reductase A and dissimilatory sulfite reductase subunit B genes. Methanosarcinales (Euryarchaeota) and Thaumarchaea were the main archaeal members. The Methanosarcinales, also observed by epifluorescent microscopy and FISH, consisted of two phylotypes that were previously solely detected in two other serpentinitzing ecosystems (The Cedars and Lost City Hydrothermal Field). Surprisingly, members of the hyperthermophilic order Thermococcales were also found which may indicate the presence of a hot subsurface biosphere. The bacterial community mainly consisted of Firmicutes, Chloroflexi, Alpha-, Gamma-, Beta-, and Delta-proteobacteria and of the candidate division NPL-UPA2. Members of these taxa were consistently found each year and may therefore represent a stable core of the indigenous bacterial community of the PHF chimneys. Firmicutes isolates representing new bacterial taxa were obtained by cultivation under anaerobic conditions. Our study revealed diverse microbial communities in PHF ST09 related to methane and sulfur compounds that share common populations with other terrestrial or submarine serpentinizing ecosystems.

Bacterial and archaeal diversity in two hot spring microbial mats from the geothermal region of Tengchong, China.

PubMed

Pagaling, Eulyn; Grant, William D; Cowan, Don A; Jones, Brian E; Ma, Yanhe; Ventosa, Antonio; Heaphy, Shaun

2012-07-01

We investigated the bacterial and archaeal diversity in two hot spring microbial mats from the geothermal region of Tengchong in the Yunnan Province, China, using direct molecular analyses. The Langpu (LP) laminated mat was found by the side of a boiling pool with temperature of 60-65 °C and a pH of 8.5, while the Tengchong (TC) streamer mat consisted of white streamers in a slightly acidic (pH 6.5) hot pool outflow with a temperature of 72 °C. Four 16S rRNA gene clone libraries were constructed and restriction enzyme analysis of the inserts was used to identify unique sequences and clone frequencies. From almost 200 clones screened, 55 unique sequences were retrieved. Phylogenetic analysis showed that the LP mat consisted of a diverse bacterial population [Cyanobacteria, Chloroflexi, Chlorobia, Nitrospirae, 'Deinococcus-Thermus', Proteobacteria (alpha, beta and delta subdivisions), Firmicutes, Bacteroidetes and Actinobacteria], while the archaeal population was dominated by methanogenic Euryarchaeota and Crenarchaeota. In contrast, the TC streamer mat consisted of a bacterial population dominated by Aquificae, while the archaeal population also contained Korarchaeota as well as Crenarchaeota and methanogenic Euryarchaeota. These mats harboured clone sequences affiliated to unidentified lineages, suggesting that they are a potential source for discovering novel bacteria and archaea.

Nitrification and Microbial Activity in Response to Wastewater Effluent in the Sacramento/San Joaquin River Delta

NASA Astrophysics Data System (ADS)

Challenor, T.; Damashek, J.; Tolar, B. B.; Francis, C.; Casciotti, K. L.

2016-12-01

Nitrification, the oxidation of ammonium (NH4+) to nitrate (NO3-) by a coterie of ammonia-oxidizing bacteria (AOB) and archaea (AOA), is a crucial step in removing nitrogen from marine ecosystems. The Sacramento/San Joaquin River delta receives ammonium-laden effluent from the Sacramento Regional Wastewater Treatment Plant (SRWTP) and nitrate from agriculture runoff. The system provides freshwater to irrigate the Central Valley and drinking water for many millions of people. In recent years, however, this environment has experienced ecological turmoil - the Pelagic Organism Decline (POD) refers to a die-out of fish and other species over the course of three decades. One explanation implicated excessive ammonium input, claiming it limited primary productivity and hurt pelagic fish down the line. A new hypothesis, however, posits that the ecosystem may soon face the opposite problem: over-productivity and hypoxia due to increased light availability and reduced turbidity. Studying the rate of nitrification and the makeup of the microbial community will further elucidate how nutrient loading has impacted this ecosystem. Nitrification rates were calculated from water samples collected in the Sacramento River starting at the SRWTP and moving downstream. Samples were spiked with 15N-labeled ammonium and incubated for 24 hours in triplicate. Four time-points were extracted and the "denitrifier" method was used to measure the isotopic ratio of N over time. DNA and RNA were extracted from filtered water at each site and PCR and qPCR assays were used targeting the amoA gene, which encodes the α-subunit of ammonia monooxygenase, responsible for oxidizing ammonium to nitrite (NO2-). Consistent with previous nitrification data, rates were highest in the lower river downstream of the SRWTP, where nitrate concentrations were correspondingly elevated. AOB predominated in the ammonia oxidizing community, and some clades were unique to this ecosystem. Nitrifying microbes provide an ecological service in reducing ammonium availability, a goal of wastewater regulation. Monitoring the activity of the Sacramento River's nitrifying community will be important for analyzing how this ecosystem responds to future changes that will impact populations of fish and people living in California.

Methane turnover and methanotrophic communities in arctic aquatic ecosystems of the Lena Delta, Northeast Siberia.

PubMed

Osudar, Roman; Liebner, Susanne; Alawi, Mashal; Yang, Sizhong; Bussmann, Ingeborg; Wagner, Dirk

2016-08-01

Large amounts of organic carbon are stored in Arctic permafrost environments, and microbial activity can potentially mineralize this carbon into methane, a potent greenhouse gas. In this study, we assessed the methane budget, the bacterial methane oxidation (MOX) and the underlying environmental controls of arctic lake systems, which represent substantial sources of methane. Five lake systems located on Samoylov Island (Lena Delta, Siberia) and the connected river sites were analyzed using radiotracers to estimate the MOX rates, and molecular biology methods to characterize the abundance and the community composition of methane-oxidizing bacteria (MOB). In contrast to the river, the lake systems had high variation in the methane concentrations, the abundance and composition of the MOB communities, and consequently, the MOX rates. The highest methane concentrations and the highest MOX rates were detected in the lake outlets and in a lake complex in a flood plain area. Though, in all aquatic systems, we detected both, Type I and II MOB, in lake systems, we observed a higher diversity including MOB, typical of the soil environments. The inoculation of soil MOB into the aquatic systems, resulting from permafrost thawing, might be an additional factor controlling the MOB community composition and potentially methanotrophic capacity. © FEMS 2016. All rights reserved. For permissions, please e-mail: journals.permissions@oup.com.

Late Holocene evolution of playa lakes in the central Ebro depression based on geophysical surveys and morpho-stratigraphic analysis of lacustrine terraces

NASA Astrophysics Data System (ADS)

Gutiérrez, F.; Valero-Garcés, B.; Desir, G.; González-Sampériz, P.; Gutiérrez, M.; Linares, R.; Zarroca, M.; Moreno, A.; Guerrero, J.; Roqué, C.; Arnold, L. J.; Demuro, M.

2013-08-01

The origin and morpho-stratigraphic evolution of the largest playa-lake system (La Playa-El Pueyo) in the Bujaraloz-Sástago endorheic area, located in the semiarid central sector of the Ebro Depression, are analysed. The enclosed depressions are developed on gypsiferous Tertiary bedrock and show a prevalent WNW-ESE orientation parallel to the direction of the prevalent strong local wind (Cierzo). Yardangs have been carved in bedrock and unconsolidated terrace deposits in the leeward sector of the largest lake basins. A sequence of three lacustrine terrace levels has been identified by detailed geomorphological mapping. The treads of the upper, middle and lower terrace levels are situated at + 9 m, + 6 m and + 0.5 m above the playa-lake floors, respectively. Seismic refraction and electrical resistivity profiles acquired in La Playa reveal a thin basin fill (~ 2 m) with a planar base. These data allow ruling out the genetic hypothesis for the depressions involving the collapse of large bedrock cavities and support a mixed genesis of combined widespread dissolution and subsidence by groundwater discharge and eolian deflation during dry periods. The 5 m thick deposit of the middle terrace was investigated in hand-dug and backhoe trenches. Six AMS radiocarbon ages from this terrace indicate an aggradation phase between 3.9 ka and ca. 2 ka. These numerical ages yield a maximum average aggradation rate of 2.6 mm/yr and a minimum excavation rate by wind deflation of 3 mm/yr subsequent to the accumulation of the middle terrace. The latter figure compares well with those calculated in several arid regions of the world using yardangs carved in palaeolake deposits. The aggradation phase between 4 and 2 ka is coherent with other Iberian and Mediterranean records showing relatively more humid conditions after 4 ka, including the Iron Ages and the Iberian-Roman Period.

Doubled haploid production from Spanish onion (Allium cepa L.) germplasm: embryogenesis induction, plant regeneration and chromosome doubling.

PubMed

Fayos, Oreto; Vallés, María P; Garcés-Claver, Ana; Mallor, Cristina; Castillo, Ana M

2015-01-01

The use of doubled haploids in onion breeding is limited due to the low gynogenesis efficiency of this species. Gynogenesis capacity from Spanish germplasm, including the sweet cultivar Fuentes de Ebro, the highly pungent landrace BGHZ1354 and the two Valenciana type commercial varieties Recas and Rita, was evaluated and optimized in this study. The OH-1 population, characterized by a high gynogenesis induction, was used as control. Growing conditions of the donor plants were tested with a one-step protocol and field plants produced a slightly higher percentage of embryogenesis induction than growth chamber plants. A one-step protocol was compared with a two-step protocol for embryogenesis induction. Spanish germplasm produced a 2-3 times higher percentage of embryogenesis with the two-step protocol, Recas showing the highest percentage (2.09%) and Fuentes de Ebro the lowest (0.53%). These percentages were significantly lower than those from the OH-1 population, with an average of 15% independently of the protocol used. The effect of different containers on plant regeneration was tested using both protocols. The highest percentage of acclimated plants was obtained with the two-step protocol in combination with Eco2box (70%), whereas the lowest percentage was observed with glass tubes in the two protocols (20-23%). Different amiprofos-methyl (APM) treatments were applied to embryos for chromosome doubling. A similar number of doubled haploid plants were recovered with 25 or 50 μM APM in liquid medium. However, the application of 25 μM in solid medium for 24 h produced the highest number of doubled haploid plants. Somatic regeneration from flower buds of haploid and mixoploid plants proved to be a successful approach for chromosome doubling, since diploid plants were obtained from the four regenerated lines. In this study, doubled haploid plants were produced from the four Spanish cultivars, however further improvements are needed to increase their gynogenesis efficiency.

Transcriptomic, biochemical and individual markers in transplanted Daphnia magna to characterize impacts in the field.

PubMed

Rivetti, Claudia; Campos, Bruno; Faria, Melissa; De Castro Català, Nuria; Malik, Amrita; Muñoz, Isabel; Tauler, Romà; Soares, Amadeu M V M; Osorio, Victoria; Pérez, Sandra; Gorga, Marina; Petrovic, Mira; Mastroianni, Nicola; de Alda, Miren López; Masiá, Ana; Campo, Julian; Picó, Yolanda; Guasc, Helena; Barceló, Damià; Barata, Carlos

2015-01-15

Daphnia magna individuals were transplanted across 12 sites from three Spanish river basins (Llobregat, Ebro, Jucar) showing different sources of pollution. Gene transcription, feeding and biochemical responses in the field were assessed and compared with those obtained in re-constituted water treatments spiked with organic eluates obtained from water samples collected at the same locations and sampling periods. Up to 166 trace contaminants were detected in water and classified by their mode of action into 45 groups that included metals, pharmaceuticals, pesticides, illicit drugs, and other industrial compounds. Physicochemical water parameters differentiated the three river basins with Llobregat having the highest levels of conductivity, metals and pharmaceuticals, followed by Ebro, whereas the Jucar river had the greatest levels of illicit drugs. D. magna grazing rates and cholinesterase activity responded similarly than the diversity of riparian benthic communities. Transcription patterns of 13 different genes encoding for general stress, metabolism and energy processes, molting and xenobiotic transporters corroborate phenotypic responses differentiated sites within and across river basins. Principal Component Analysis and Partial Least Square Projections to Latent Structures regression analyses indicated that measured in situ responses of most genes and biomarkers and that of benthic macroinvertebrate diversity indexes were affected by distinct environmental factors. Conductivity, suspended solids and fungicides were negatively related with the diversity of macroinvertebrates cholinesterase, and feeding responses. Gene transcripts of heat shock protein and metallothionein were positively related with 11 classes of organic contaminants and 6 metals. Gene transcripts related with signaling paths of molting and reproduction, sugar, protein and xenobiotic metabolism responded similarly in field and lab exposures and were related with high residue concentrations of analgesics, diuretics, psychiatric drugs, β blockers, illicit drugs, trizoles, bisphenol A, caffeine and pesticides. These results indicate that application of omic technologies in the field is a promising subject in water management. Copyright © 2014 Elsevier B.V. All rights reserved.

Origin and pathways of the Winter Intermediate Water in the Western Mediterranean Sea using observations and numerical simulation

NASA Astrophysics Data System (ADS)

Juza, Mélanie; Renault, Lionel; Ruiz, Simon; Heslop, Emma; Tintoré, Joaquin

2013-04-01

The Winter Intermediate Water (WIW) plays a crucial role in the water exchanges through the Balearic channels and in the Western Mediterranean Sea general circulation. Its formation occurs in the North-Western of the basin under severe winter conditions. Observational datasets (in situ temperature and salinity profiles collected during CTD and glider transects) reveal the presence of WIW in the Gulf of Lion and in the Ibiza Channel during the winter-spring 2011. However, the inhomogeneous spatial and temporal coverage of the observational array makes the monitoring of WIW through the basin difficult. In this study, as a complement to the observations, a ROMS 1/40° regional oceanic simulation implemented over the Western Mediterranean Sea is used to determine the origin, evolution and pathways of the WIW in the basin. The simulation outputs are first collocated at the observation positions. Their comparison against the observations shows the ability of the simulation to reproduce the observed WIW in the Gulf of Lion in March 2011 and in the Ibiza channel in winter-spring 2011. Then, the fully-sampled simulation outputs are used to study the spatial and temporal variability of the WIW in the Western Mediterranean Sea during the winter 2011. Investigating the T/S diagrams and transports in key sections over the basin and calculating lagrangian trajectories, the main pathways of WIW in winter-spring 2011 emerge. We show that, in good agreement with the literature, the simulated WIW are formed along the continental shelves of the Gulf of Lion and Catalan Sea, and then circulate souththward in the Balearic Sea reaching 100-200m depth. One branch (mainly formed in the Ebro estuary) goes through the Ibiza Channel, while the second main branch (coming from both the Gulf of Lion and the Ebro estuary) splits to the East joining the Balearic Current.

Very large dune formation along the Ebro outer continental shelf (Western Mediterranean)

NASA Astrophysics Data System (ADS)

Lo Iacono, Claudio; Guillén, Jorge; Puig, Pere; Ribó, Marta; Ballesteros, Maria; Palanques, Albert; Farrán, Marcelli; Acosta, Juan

2010-05-01

Large and very large subaqueous dunes have been observed in a number of outer shelf regions around the world, tipically developing on fossil sand bodies and ridges. Dunes observed on outer shelves usually display large dimensions with maximum wavelength reaching up to 500 m and heights up to 20 m. Forcing mechanisms able to induce their formation have been described as strong bottom currents related to tidal variations and water masses flowing under geostrophic conditions, generally controlled and enhanced by local geomorphologic configurations. In this study, such bed features have been recognized, mapped and measured around the Columbretes Islands (Ebro continental shelf - Western Mediterranean) with the aim to reconstruct which are the potential forcing processes that could generate them in relation to the local settings of the area. Swath-bathymetry around the Columbretes Islands was collected using 30 kHz and 180 kHz Multi Beam echo-sounders for a 50-400 m water depth range. Bathymetric data revealed the presence of three main relict sand bodies along the outer shelf, for a 80-116 m depth range, above which asymmetrical, slightly asymmetrical and symmetrical large and very large 2D and 3D subaqueous dunes were observed. Dunes range from 150 to 760 m in wavelength and from tens of cm to 6 m in height. These bedforms are composed of sandy sediments, presumably coming from the degraded relict sand bodies on which they developed, mixed to the fine fractions coming from the recent draping holocenic sediments. The orientation of the dunes is SSW and progressively turns to W directions moving towards the southernmost sector of the area, following the trend of the shelf-edge. Observed dunes display a strong asymmetric profile for those occurring along the shelf-edge (Symmetry Index (SI): 2.6) and lose progressively their asymmetry towards the inner portion of the shelf (SI: 0.5), being 0.6 the minimum SI value to classify the dunes as asymmetric. The subaqueous dunes observed along the studied region are amongst the largest ever recognized on an outer shelf setting. Morphologic characters and the orientation towards SW and W directions suggest the Liguro-Provenzal-Catalan geostrophic current as the primary forcing factor in their formation. Contemporary hydrodynamic measurement at the Ebro continental shelf-edge show that near-bottom wave action is negligible in this area, whereas maximum shear stresses induced by currents are able to resuspend fine sand particles and prevent the relict transgressive deposits from being covered by mud. However, recorded nearbottom currents generate shear stresses below the critical value for transport the relict coarse sands found in the study area and form large bedforms. The comparison of successive bathymetric images and the relation wavelength/height suggest that the described very large dunes are inactive features over long periods, as observed in similar environments along several continental margins. Thus, the morphological configuration of the Columbretes outer shelf must have played a crucial role in enhancing the southward flowing bottom currents during energetic hydrodynamic events, giving them the potential to generate such bedforms.

Gas hydrates of outer continental margins

DOE Office of Scientific and Technical Information (OSTI.GOV)

Kvenvolden, K.A.

1990-05-01

Gas hydrates are crystalline substances in which a rigid framework of water molecules traps molecules of gas, mainly methane. Gas-hydrate deposits are common in continental margin sediment in all major oceans at water depths greater than about 300 m. Thirty-three localities with evidence for gas-hydrate occurrence have been described worldwide. The presence of these gas hydrates has been inferred mainly from anomalous lacoustic reflectors seen on marine seismic records. Naturally occurring marine gas hydrates have been sampled and analyzed at about tensites in several regions including continental slope and rise sediment of the eastern Pacific Ocean and the Gulf ofmore » Mexico. Except for some Gulf of Mexico gas hydrate occurrences, the analyzed gas hydrates are composed almost exclusively of microbial methane. Evidence for the microbial origin of methane in gas hydrates includes (1) the inverse relation between methane occurence and sulfate concentration in the sediment, (2) the subparallel depth trends in carbon isotopic compositions of methane and bicarbonate in the interstitial water, and (3) the general range of {sup 13}C depletion ({delta}{sub PDB}{sup 13}C = {minus}90 to {minus}60 {per thousand}) in the methane. Analyses of gas hydrates from the Peruvian outer continental margin in particular illustrate this evidence for microbially generated methane. The total amount of methane in gas hydrates of continental margins is not known, but estimates of about 10{sup 16} m{sup 3} seem reasonable. Although this amount of methane is large, it is not yet clear whether methane hydrates of outer continental margins will ever be a significant energy resource; however, these gas hydrates will probably constitute a drilling hazard when outer continental margins are explored in the future.« less

Hydrogeology, chemical and microbial activity measurement through deep permafrost

DOE Office of Scientific and Technical Information (OSTI.GOV)

Stotler, R.L.; Frape, S.K.; Freifeld, B.M.

2010-04-01

Little is known about hydrogeochemical conditions beneath thick permafrost, particularly in fractured crystalline rock, due to difficulty in accessing this environment. The purpose of this investigation was to develop methods to obtain physical, chemical, and microbial information about the subpermafrost environment from a surface-drilled borehole. Using a U-tube, gas and water samples were collected, along with temperature, pressure, and hydraulic conductivity measurements, 420 m below ground surface, within a 535 m long, angled borehole at High Lake, Nunavut, Canada, in an area with 460-m-thick permafrost. Piezometric head was well above the base of the permafrost, near land surface. Initial watermore » samples were contaminated with drill fluid, with later samples <40% drill fluid. The salinity of the non-drill fluid component was <20,000 mg/L, had a Ca/Na ratio above 1, with {delta}{sup 18}O values {approx}5{per_thousand} lower than the local surface water. The fluid isotopic composition was affected by the permafrost-formation process. Nonbacteriogenic CH{sub 4} was present and the sample location was within methane hydrate stability field. Sampling lines froze before uncontaminated samples from the subpermafrost environment could be obtained, yet the available time to obtain water samples was extended compared to previous studies. Temperature measurements collected from a distributed temperature sensor indicated that this issue can be overcome easily in the future. The lack of methanogenic CH{sub 4} is consistent with the high sulfate concentrations observed in cores. The combined surface-drilled borehole/U-tube approach can provide a large amount of physical, chemical, and microbial data from the subpermafrost environment with few, controllable, sources of contamination.« less

Characterization of microbial arsenate reduction in the anoxic bottom waters of Mono Lake, California

USGS Publications Warehouse

Hoeft, S.E.; Lucas, F.; Hollibaugh, J.T.; Oremland, R.S.

2002-01-01

Dissimilatory reduction of arsenate (DAsR) occurs in the arsenic-rich, anoxic water column of Mono Lake, California, yet the microorganisms responsible for this observed in situ activity have not been identified. To gain insight as to which microorganisms mediate this phenomenon, as well as to some of the biogeochemical constraints on this activity, we conducted incubations of arsenate-enriched bottom water coupled with inhibition/amendment studies and Denaturing Gradient Gel Electrophoresis (DGGE) characterization techniques. DAsR was totally inhibited by filter-sterilization and by nitrate, partially inhibited (~50%) by selenate, but only slightly (~25%) inhibited by oxyanions that block sulfate-reduction (molybdate and tungstate). The apparent inhibition by nitrate, however, was not due to action as a preferred electron acceptor to arsenate. Rather, nitrate addition caused a rapid, microbial re-oxidation of arsenite to arsenate, which gave the overall appearance of no arsenate loss. A similar microbial oxidation of As(III) was also found with Fe(III), a fact that has implications for the recycling of As(V) in Mono Lake's anoxic bottom waters. DAsR could be slightly (10%) stimulated by substrate amendments of lactate, succinate, malate, or glucose, but not by acetate, suggesting that the DAsR microflora is not electron donor limited. DGGE analysis of amplified 16S rDNA gene fragments from incubated arsenate-enriched bottom waters revealed the presence of two bands that were not present in controls without added arsenate. The resolved sequences of these excised bands indicated the presence of members of the epsilon (Sulfurospirillum) and delta (Desulfovibrio) subgroups of the Proteobacteria, both of which have representative species that are capable of anaerobic growth using arsenate as their electron acceptor.

Workshop to develop deep-life continental scientific drilling projects

DOE PAGES

Kieft, T. L.; Onstott, T. C.; Ahonen, L.; ...

2015-05-29

The International Continental Scientific Drilling Program (ICDP) has long espoused studies of deep subsurface life, and has targeted fundamental questions regarding subsurface life, including the following: "(1) What is the extent and diversity of deep microbial life and what are the factors limiting it? (2) What are the types of metabolism/carbon/energy sources and the rates of subsurface activity? (3) How is deep microbial life adapted to subsurface conditions? (4) How do subsurface microbial communities affect energy resources? And (5) how does the deep biosphere interact with the geosphere and atmosphere?" (Horsfield et al., 2014) Many ICDP-sponsored drilling projects have includedmore » a deep-life component; however, to date, not one project has been driven by deep-life goals, in part because geomicrobiologists have been slow to initiate deep biosphere-driven ICDP projects. Therefore, the Deep Carbon Observatory (DCO) recently partnered with the ICDP to sponsor a workshop with the specific aim of gathering potential proponents for deep-life-driven ICDP projects and ideas for candidate drilling sites. Twenty-two participants from nine countries proposed projects and sites that included compressional and extensional tectonic environments, evaporites, hydrocarbon-rich shales, flood basalts, Precambrian shield rocks, subglacial and subpermafrost environments, active volcano–tectonic systems, megafan deltas, and serpentinizing ultramafic environments. The criteria and requirements for successful ICDP applications were presented. Deep-life-specific technical requirements were discussed and it was concluded that, while these procedures require adequate planning, they are entirely compatible with the sampling needs of other disciplines. As a result of this workshop, one drilling workshop proposal on the Basin and Range Physiographic Province (BRPP) has been submitted to the ICDP, and several other drilling project proponents plan to submit proposals for ICDP-sponsored drilling workshops in 2016.« less

Indigenous and Contaminant Microbes in Ultradeep Mines

NASA Technical Reports Server (NTRS)

Onstott, T. C.; Moser, D. P.; Pfiffner, S. M.; Fredrickson, J. K.; Brockman, F. J.; Phelps, T. J.; White, D. C.; Peacock, A.; Balkwill, D.; Hoover, R. B.;

Indigenous and Contaminant Microbes in Ultradeep Mines

NASA Technical Reports Server (NTRS)

Onstott, T. C.; Moser, D. P.; Pfiffner, S. M.; Fredrickson, J. F.; Brockman, F. J.; Phelps, T. J.; White, D. C.; Peacock, A.; Balkwill, D.; Hoover, R.;

Extracellular enzyme activity and microbial diversity measured on seafloor exposed basalts from Loihi seamount indicate the importance of basalts to global biogeochemical cycling.

PubMed

Jacobson Meyers, Myrna E; Sylvan, Jason B; Edwards, Katrina J

2014-08-01

Seafloor basalts are widely distributed and host diverse prokaryotic communities, but no data exist concerning the metabolic rates of the resident microbial communities. We present here potential extracellular enzyme activities of leucine aminopeptidase (LAP) and alkaline phosphatase (AP) measured on basalt samples from different locations on Loihi Seamount, HI, coupled with analysis of prokaryotic biomass and pyrosequencing of the bacterial 16S rRNA gene. The community maximum potential enzyme activity (Vmax) of LAP ranged from 0.47 to 0.90 nmol (g rock)(-1) h(-1); the Vmax for AP was 28 to 60 nmol (g rock)(-1) h(-1). The Km of LAP ranged from 26 to 33 μM, while the Km for AP was 2 to 7 μM. Bacterial communities on Loihi basalts were comprised primarily of Alpha-, Delta-, andGammaproteobacteria, Bacteroidetes, and Planctomycetes. The putative ability to produce LAP is evenly distributed across the most commonly detected bacterial orders, but the ability to produce AP is likely dominated by bacteria in the orders Xanthomonadales, Flavobacteriales, and Planctomycetales. The enzyme activities on Loihi basalts were compared to those of other marine environments that have been studied and were found to be similar in magnitude to those from continental shelf sediments and orders of magnitude higher than any measured in the water column, demonstrating that the potential for exposed basalts to transform organic matter is substantial. We propose that microbial communities on basaltic rock play a significant, quantifiable role in benthic biogeochemical processes. Copyright © 2014, American Society for Microbiology. All Rights Reserved.

Natural abundances of carbon isotopes in acetate from a coastal marine sediment

NASA Technical Reports Server (NTRS)

Blair, N. E.; Martens, C. S.; Des Marais, D. J.

1987-01-01

Measurements of the natural abundances of carbon isotopes were made in acetate samples isolated from the anoxic marine sediment of Cape Lookout Bight, North Carolina. The typical value of the total acetate carbon isotope ratio (delta 13C) was -16.1 +/- 0.2 per mil. The methyl and carboxyl groups were determined to be -26.4 +/- 0.3 and -6.0 +/- 0.3 per mil, respectively, for one sample. The isotopic composition of the acetate is thought to have resulted from isotopic discriminations that occurred during the cycling of that molecule. Measurements of this type, which have not been made previously in the natural environment, may provide information about the dominant microbial pathways in anoxic sediments as well as the processes that influence the carbon isotopic composition of biogenic methane from many sources.

A Comprehensive Assessment of Biologicals Contained Within Commercial Airliner Cabin Air

NASA Technical Reports Server (NTRS)

LaDuc, Myron T.; Osman, Shariff; Dekas, Anne; Stuecker, Tara; Newcombe, Dave; Piceno, Yvette; Fuhrman, J.; Andersen, Gary; Venkateswaran, Kasthuri; Bearman, Greg

2006-01-01

Both culture-based and culture-independent, biomarker-targeted microbial enumeration and identification technologies were employed to estimate total microbial and viral burden and diversity within the cabin air of commercial airliners. Samples from each of twenty flights spanning three commercial carriers were collected via air-impingement. When the total viable microbial population was estimated by assaying relative concentrations of the universal energy carrier ATP, values ranged from below detection limits (BDL) to 4.1 x 106 cells/cubic m of air. The total viable microbial population was extremely low in both of Airline A (approximately 10% samples) and C (approximately 18% samples) compared to the samples collected aboard flights on Airline A and B (approximately 70% samples). When samples were collected as a function of time over the course of flights, a gradual accumulation of microbes was observed from the time of passenger boarding through mid-flight, followed by a sharp decline in microbial abundance and viability from the initiation of descent through landing. It is concluded in this study that only 10% of the viable microbes of the cabin air were cultivable and suggested a need to employ state-of-the art molecular assay that measures both cultivable and viable-but-non-cultivable microbes. Among the cultivable bacteria, colonies of Acinetobacter sp. were by far the most profuse in Phase I, and Gram-positive bacteria of the genera Staphylococcus and Bacillus were the most abundant during Phase II. The isolation of the human pathogens Acinetobacter johnsonii, A. calcoaceticus, Janibacter melonis, Microbacterium trichotecenolyticum, Massilia timonae, Staphylococcus saprophyticus, Corynebacterium lipophiloflavum is concerning, as these bacteria can cause meningitis, septicemia, and a handful of sometimes fatal diseases and infections. Molecular microbial community analyses exhibited presence of the alpha-, beta-, gamma-, and delta- proteobacteria, as well as Gram-positive bacteria, Fusobacteria, Cyanobacteria, Deinococci, Bacterioidetes, Spirochetes, and Planctomyces in varying abundance. Neisseria meningitidis rDNA sequences were retrieved in great abundance from Airline A followed by Streptococcus oralis/mitis sequences. Pseudomonas synxantha sequences dominated Airline B clone libraries, followed by those of N. meningitidis and S. oralis/mitis. In Phase II, Airline C, sequences representative of more than 113 species, enveloping 12 classes of bacteria, were retrieved. Proteobacterial sequences were retrieved in greatest frequency (58% of all clone sequences), followed in short order by those stemming from Gram-positives bacteria (31% of all clone sequences). As for overall phylogenetic breadth, Gram-positive and alpha-proteobacteria seem to have a higher affinity for international flights, whereas beta-and gamma-proteobacteria are far more common about domestic cabin air parcels in Airline C samples. Ultimately, the majority of microbial species circulating throughout the cabin airs of commercial airliners are commensal, infrequently pathogenic normal flora of the human nasopharynx and respiratory system. Many of these microbes likely originate from the oral and nasal cavities, and lungs of passengers and flight crew and are disseminated unknowingly via routine conversation, coughing, sneezing, and stochastic passing of fomites. The data documented in this study will be useful to generate a baseline microbial population database and can be utilized to develop biosensor instrumentation for monitoring microbial quality of cabin or urban air.

Sources and Contributions of Oxygen During Microbial Pyrite Oxidation: the Triple Oxygen Isotopes of Sulfate

NASA Astrophysics Data System (ADS)

Ziegler, K.; Coleman, M. L.; Mielke, R. E.; Young, E. D.

2008-12-01

The triple isotopes of oxygen (Δ17O' = δ17O'-0.528 × δ18O' using logarithmic deltas) can trace the oxygen sources of sulfate produced during sulfide oxidation, an important biogeochemical process on Earth's surface and possibly also on Mars [1]. δ18OSO4 compositions are determined by the isotopic selectivity of the mechanism(s) responsible for their changes, and the δ18O value of the reactants (O2 vs. H2O). The relative proportional importance and contribution of each of those sources and mechanisms, as well as their associated isotopic fractionations, are not well understood. We are investigating the use of Δ 17O as a quantitative and qualitative tracer for the different processes and oxygen sources involved in sulfate production. Δ17O signatures are distinct fingerprints of these reservoirs, independent of fractionation factors that can be ambiguous. We conducted controlled abiotic and biotic (Acidithiobacillus ferrooxidans, A.f.) laboratory experiments in which water was spiked with 18O, allowing us to quantify the sources of sulfate oxygen and therefore the processes attending sulfate formation. Results of this Δ17O tracer study show that A.f. microbes initiate pyrite S-oxidation within hours of exposure, and that sulfate is produced from ~90% atmospheric oxygen. This initial lag-phase (< 3 days) is characterized by subtle and multiple changes in oxygen source and contribution that is likely due to the adjustment of the microbial metabolism from S to Fe2+-oxidation. A more detailed understanding of the microbial mechanisms and behavior in the initial lag-phase will aid in the understanding of the ecological conditions required for microbial populations to establish and survive. An exponential phase of growth, facilitated by microbial Fe2+-oxidation, follows. The source of sulfate rapidly switches to abiotic sulfide oxidation during exponential growth and the source of oxygen switches from atmospheric O2 to nearly ~100% water. Pending acquisition of complimentary chemistry data (in progress), we interpret our isotope data to indicate that the biotic fractionation factor ɛ18OSO4-O2 of at least ~ -25 to - 35‰ is augmented by microbially induced kinetic fractionation; it is larger than expected based on published equilibrium values [2,3,4]. Our inferred ɛ18OSO4-H2O of at least ~+10‰ is similar to some reported values. These new insights into the close links between microbial life cycle and sources of sulfate oxygen during sulfide oxidation, and their oxygen isotopic expressions, will help elucidate the role of microbial oxidation in natural systems. If microbial populations in natural systems remain in a perpetual lag-phase due to constrains of chemistry, atmospheric oxygen will imprint its isotopic signature onto sulfate deposits. Ultimately, such data could be used as biosignatures on Early Earth or Mars. [1] Brunner and Coleman (2008) EPSL 270, 63-72. [2] Balci et al. (2007) GCA 71, 3796-3811. [3] Pisapia et al. (2007) GCA 71, 2474-2490. [4] Taylor et al. (1984) GCA 48, 2669-2678.

Occurrence and distribution of organochlorine compounds in sediment and livers of striped bass (Morone saxatilis) from the San Francisco Bay-Delta Estuary

USGS Publications Warehouse

Pereira, W.E.; Hostettler, F.D.; Cashman, J.R.; Nishioka, R.S.

1994-01-01

A preliminary assessment was made in 1992 of chlorinated organic compounds in sediments and in livers of striped bass from the San Francisco Bay-Delta Estuary. Samples of sediment and striped bass livers contained DDT (ethane, 1,1,1-trichloro-2,2-bis (p-chlorophenyl)-) and its degradation products, DDD (ethane, 1,1-dichloro-2,2-bis(p-chlorophenyl)-) and DDE (ethylene, 1,1-dichloro-2,2-bis (p-chlorophenyl)-); PCBs (polychlorinated biphenyls); alpha and gamma chlordane, and cis and trans nonachlor. In addition, the livers of striped bass contained small concentrations of DCPA (dimethyl tetrachloroterephthalate), a pre-emergent herbicide. Agricultural run-off from the Sacramento and San Joaquin Rivers, as well as atmospheric deposition, are probably responsible for a low chronic background of DDT in sediments throughout San Francisco Bay. Larger concentrations of DDT in sediment near Richmond in the Central Bay, and Coyote Creek in the South Bay may be derived from point sources. Ratios of pentachloro isomers of PCBs to hexachloro isomers in the South Bay sediments were different from those in the Central and North Bay, suggesting either differences in microbial activity in the sediments or different source inputs of PCBs. Concentrations of alpha chlordane in livers of striped bass were greater than those of gamma chlordane, which suggests a greater environmental stability and persistence of alpha chlordane. Trans nonachlor, a minor component of technical chlorodane, was present in greater concentrations than alpha and gamma chlordane and cis nonachlor. Trans nonachlor is more resistant to metabolism than alpha and gamma chlordane and cis nonachlor, and serves as an environmentally stable marker compound of chlordane contamination in the estuary. Chlorinated organic compounds have bioaccumulated in the livers of striped bass. These compounds may contribute to the decline of the striped bass in San Francisco Bay-Delta Estuary.

Effects of Different Tillage and Straw Return on Soil Organic Carbon in a Rice-Wheat Rotation System

PubMed Central

Zhu, Liqun; Hu, Naijuan; Yang, Minfang; Zhan, Xinhua; Zhang, Zhengwen

2014-01-01

Soil management practices, such as tillage method or straw return, could alter soil organic carbon (C) contents. However, the effects of tillage method or straw return on soil organic C (SOC) have showed inconsistent results in different soil/climate/cropping systems. The Yangtze River Delta of China is the main production region of rice and wheat, and rice-wheat rotation is the most important cropping system in this region. However, few studies in this region have been conducted to assess the effects of different tillage methods combined with straw return on soil labile C fractions in the rice-wheat rotation system. In this study, a field experiment was used to evaluate the effects of different tillage methods, straw return and their interaction on soil total organic C (TOC) and labile organic C fractions at three soil depths (0–7, 7–14 and 14–21 cm) for a rice-wheat rotation in Yangzhong of the Yangtze River Delta of China. Soil TOC, easily oxidizable C (EOC), dissolved organic C (DOC) and microbial biomass C (MBC) contents were measured in this study. Soil TOC and labile organic C fractions contents were significantly affected by straw returns, and were higher under straw return treatments than non-straw return at three depths. At 0–7 cm depth, soil MBC was significantly higher under plowing tillage than rotary tillage, but EOC was just opposite. Rotary tillage had significantly higher soil TOC than plowing tillage at 7–14 cm depth. However, at 14–21 cm depth, TOC, DOC and MBC were significantly higher under plowing tillage than rotary tillage except for EOC. Consequently, under short-term condition, rice and wheat straw both return in rice-wheat rotation system could increase SOC content and improve soil quality in the Yangtze River Delta. PMID:24586434

Recent (<4 year old) Leaf Litter is Not a Major Source of Microbial Carbon in a Temperate Forest Mineral Soil

DOE Office of Scientific and Technical Information (OSTI.GOV)

Kramer, Christiane; Trumbore, Susan E.; Froberg, Mats J.

2010-01-01

Microbial communities in soil A horizons derive their carbon from several potential sources: organic carbon (C) transported down from overlying litter and organic horizons, root-derived C, or soil organic matter. We took advantage of a multi-year experiment that manipulated the {sup 14}C isotope signature of surface leaf litter inputs in a temperate forest at the Oak Ridge Reservation, Tennessee, USA, to quantify the contribution of recent leaf litter C to microbial respiration and biomarkers in the underlying mineral soil. We observed no measurable difference (< {approx}40{per_thousand} given our current analytical methods) in the radiocarbon signatures of microbial phospholipid fatty acidsmore » (PLFA) isolated from the top 10 cm of mineral soil in plots that experienced 3 years of litterfall that differed in each year by {approx}750{per_thousand} between high-{sup 14}C and low-{sup 14}C treatments. Assuming any difference in {sup 14}C between the high- and low-{sup 14}C plots would reflect C derived from these manipulated litter additions, we estimate that <6% of the microbial C after 4 years was derived from the added 1-4-year-old surface litter. Large contributions of C from litter < 1 year (or >4 years) old (which fell after (or prior to) the manipulation and therefore did not differ between plots) are not supported because the {sup 14}C signatures of the PLFA compounds (averaging 200-220{per_thousand}) is much higher that of the 2004-5 leaf litter (115{per_thousand}) or pre-2000 litter. A mesocosm experiment further demonstrated that C leached from {sup 14}C-enriched surface litter or the O horizon was not a detectable C source in underlying mineral soil microbes during the first eight months after litter addition. Instead a decline in the {sup 14}C of PLFA over the mesocosm experiment likely reflected the loss of a pre-existing substrate not associated with added leaf litter. Measured PLFA {Delta}{sup 14}C signatures were higher than those measured in bulk mineral soil organic matter in our experiments, but fell within the range of {sup 14}C values measured in mineral soil roots. Together, our experiments suggest that root-derived C is the major (>60%) source of C for microbes in these temperate deciduous forest soils.« less

Dynamic Towed Array Models and State Estimation for Underwater Target Tracking

DTIC Science & Technology

2013-09-01

adjusting the value of 2q impacts how much non-linear acceleration the model can handle. In [22] it is shown that the best value for 2q is generated...partial_brng_x1 = (-deltaY) / ((deltaY)^2 + (deltaX)^2); partial_brng_x3 = (deltaX) / ((deltaY)^2 + (deltaX)^2); H11 = partial_brng_x1; H13 ...freq_recHat]; H11 = -deltaY/Rng^2; H13 = deltaX/Rng^2; Mult = xhat(5)/Sound_Spd; T1 = Mult*deltaY/Rng^3; T2 = ((deltaVx)*(deltaY)-(deltaVy

Cannabinoid ester constituents from high-potency Cannabis sativa.

PubMed

Ahmed, Safwat A; Ross, Samir A; Slade, Desmond; Radwan, Mohamed M; Zulfiqar, Fazila; Matsumoto, Rae R; Xu, Yan-Tong; Viard, Eddy; Speth, Robert C; Karamyan, Vardan T; ElSohly, M A

2008-04-01

Eleven new cannabinoid esters, together with three known cannabinoid acids and Delta9-tetrahydrocannabinol ( Delta9-THC ), were isolated from a high-potency variety of Cannabis sativa. The structures were determined by extensive spectroscopic analyses to be beta-fenchyl Delta9-tetrahydrocannabinolate ( 1), epi-bornyl Delta9-tetrahydrocannabinolate ( 2), alpha-terpenyl Delta9-tetrahydrocannabinolate ( 3), 4-terpenyl Delta 9-tetrahydrocannabinolate ( 4), alpha-cadinyl Delta9-tetrahydrocannabinolate ( 5), gamma-eudesmyl Delta9-tetrahydrocannabinolate ( 6), gamma-eudesmyl cannabigerolate ( 7), 4-terpenyl cannabinolate ( 8), bornyl Delta9-tetrahydrocannabinolate ( 9), alpha-fenchyl Delta9-tetrahydrocannabinolate ( 10), alpha-cadinyl cannabigerolate ( 11), Delta9-tetrahydrocannabinol ( Delta9-THC ), Delta9-tetrahydrocannabinolic acid A ( Delta9-THCA ), cannabinolic acid A ( CBNA), and cannabigerolic acid ( CBGA). Compound 8 showed moderate antimicrobial activity against Candida albicans ATCC 90028 with an IC 50 value of 8.5 microg/mL. The isolated acids and the ester-containing fractions showed low affinity to the CB-1 receptor. [corrected

Microbial diversity in a submarine carbonate edifice from the serpentinizing hydrothermal system of the Prony Bay (New Caledonia) over a 6-year period

PubMed Central

Postec, Anne; Quéméneur, Marianne; Bes, Méline; Mei, Nan; Benaïssa, Fatma; Payri, Claude; Pelletier, Bernard; Monnin, Christophe; Guentas-Dombrowsky, Linda; Ollivier, Bernard; Gérard, Emmanuelle; Pisapia, Céline; Gérard, Martine; Ménez, Bénédicte; Erauso, Gaël

2015-01-01

Active carbonate chimneys from the shallow marine serpentinizing Prony Hydrothermal Field were sampled 3 times over a 6 years period at site ST09. Archaeal and bacterial communities composition was investigated using PCR-based methods (clone libraries, Denaturating Gel Gradient Electrophoresis, quantitative PCR) targeting 16S rRNA genes, methyl coenzyme M reductase A and dissimilatory sulfite reductase subunit B genes. Methanosarcinales (Euryarchaeota) and Thaumarchaea were the main archaeal members. The Methanosarcinales, also observed by epifluorescent microscopy and FISH, consisted of two phylotypes that were previously solely detected in two other serpentinitzing ecosystems (The Cedars and Lost City Hydrothermal Field). Surprisingly, members of the hyperthermophilic order Thermococcales were also found which may indicate the presence of a hot subsurface biosphere. The bacterial community mainly consisted of Firmicutes, Chloroflexi, Alpha-, Gamma-, Beta-, and Delta-proteobacteria and of the candidate division NPL-UPA2. Members of these taxa were consistently found each year and may therefore represent a stable core of the indigenous bacterial community of the PHF chimneys. Firmicutes isolates representing new bacterial taxa were obtained by cultivation under anaerobic conditions. Our study revealed diverse microbial communities in PHF ST09 related to methane and sulfur compounds that share common populations with other terrestrial or submarine serpentinizing ecosystems. PMID:26379636

Microbial community of a hydrothermal mud vent underneath the deep-sea anoxic brine lake Urania (eastern Mediterranean).

PubMed

Yakimov, Michail M; Giuliano, Laura; Cappello, Simone; Denaro, Renata; Golyshin, Peter N

2007-04-01

The composition of a metabolically active prokaryotic community thriving in hydrothermal mud fluids of the deep-sea hypersaline anoxic Western Urania Basin was characterized using rRNA-based phylogenetic analysis of a clone library. The physiologically active prokaryotic assemblage in this extreme environment showed a great genetic diversity. Most members of the microbial community appeared to be affiliated to yet uncultured organisms from similar ecosystems, i.e., deep-sea hypersaline basins and hydrothermal vents. The bacterial clone library was dominated by phylotypes affiliated with the epsilon-Proteobacteria subdivision recognized as an ecologically significant group of bacteria inhabiting deep-sea hydrothermal environments. Almost 18% of all bacterial clones were related to delta-Proteobacteria, suggesting that sulfate reduction is one of the dominant metabolic processes occurring in warm mud fluids. The remaining bacterial phylotypes were related to alpha- and beta-Proteobacteria, Actinobacteria, Bacteroides, Deinococcus-Thermus, KB1 and OP-11 candidate divisions. Moreover, a novel monophyletic clade, deeply branched with unaffiliated 16S rDNA clones was also retrieved from deep-sea sediments and halocline of Urania Basin. Archaeal diversity was much lower and detected phylotypes included organisms affiliated exclusively with the Euryarchaeota. More than 96% of the archaeal clones belonged to the MSBL-1 candidate order recently found in hypersaline anoxic environments, such as endoevaporitic microbial mats, Mediterranean deep-sea mud volcanoes and anoxic basins. Two phylotypes, represented by single clones were related to uncultured groups DHVE-1 and ANME-1. Thus, the hydrothermal mud of hypersaline Urania Basin seems to contain new microbial diversity. The prokaryotic community was significantly different from that occurring in the upper layers of the Urania Basin since 60% of all bacterial and 40% of all archaeal phylotypes were obtained only from mud fluids. The uniqueness of the composition of the active prokaryotic community could be explained by the complex environmental conditions at the site. The interaction of oxygenated warm mud fluids with the cold hypersaline brine of the Urania Basin seems to simultaneously select for various metabolic processes, such as aerobic and anaerobic heterotrophy, sulfide- and methane-dependent chemotrophy along with anaerobic oxidation of methane, sulfate- and metal-reduction.

Flavins in Marine Sediments: A Potentially Ubiquitous Intermediary In Microbial Electron Transfer

NASA Astrophysics Data System (ADS)

Monteverde, D.; Sylvan, J. B.; Suffridge, C.; Berelson, W.; Sanudo-Wilhelmy, S. A.; Baronas, J. J.

2016-12-01

The flavins (riboflavin, flavin mononucleotide [FMN], flavin adenine dinucleotide [FA­­D]) are a class of organic compounds synthesized by organisms to assist in redox reactions. They represent the largest class of required coenzymes, rivaled only by iron in the number of unique enzymes they bind. In addition to internal use, cultured metal-reducing organisms such as Shewanella and Geobacter have been known to release flavins into the extracellular pool to aid in external electron transfer. So called "electron shuttles" can allow organisms to overcome unfavorable geochemical zonation by transferring electrons onto a relatively distant insoluble acceptor. Despite the extensive culture work, flavins have not been systematically measured in the environment. Here we present the first set of flavin profiles from the water column and pore waters of a marine environment. Samples were taken from San Pedro Basin, a 900 meter deep, silled basin, with high seasonal inputs of organic carbon, low bottom water oxygen concentrations, and laminated sediments - making it ideal to explore variations in sediment geochemical zonations. Dissolved flavin concentrations in the water column and pore waters collected from two cores were preconcentrated via solid phase extraction and measured via LC/MS. Flavin profiles are compared to a suite of geochemical parameters as well as sediment microbial 16s rRNA data. Preliminary results show that FMN is typically an order of magnitude higher concentration than riboflavin (800-300pM versus 100-50pM). Porewater concentrations were elevated over water column values for all analytes (ranging from 100-2000pM) and displayed an increasing trend with depth in both cores. This increasing trend correlated with a decrease in dissolved Fe (ranging from 160 µM in surface sediments to 65 µM at 40 cm) and shifts in microbial diversity from sediments shallower than 5 cm depth dominated by Delta- and Gammaproteobacteria to subsurface sediments dominated by Chloroflexi and Archaea at 20-40 cm. These first environmental profiles of flavins in the marine environmental support previous observations of the importance of electron transfer intermediaries in culture and point to an important role for flavins in modern marine microbial communities.

Microarray-based analysis of survival of soil microbial community during ozonation

DOE Office of Scientific and Technical Information (OSTI.GOV)

Wang, Jian; Van Nostrand, Joy D.; He, Zhili

A 15 h ozonation was performed on bioremediated soil to remove recalcitrant residual oil. To monitor the survival of indigenous microorganisms in the soil during in-situ chemical oxidation(ISCO) culturing and a functional genearray, GeoChip, was used to examine the functional genes and structure of the microbial community during ozonation (0h, 2h, 4h, 6h, 10hand15h). Breakthrough ozonation decreased the population of cultivable heterotrophic bacteria by about 3 orders of magnitude. The total functional gene abundance and diversity decreased during ozonation, as the number of functional genes was reduced by 48percent after 15 h. However, functional genes were evenly distributed during ozonationmore » as judged by the Shannon-Weaver Evenness index. A sharp decrease in gene number was observed in the first 6 h of ozonation followed by a slower decrease in the next 9 h, which was consistent with microbial populations measured by a culture based method. Functional genes involved in carbon, nitrogen, phosphors and sulfur cycling, metal resistance and organic remediation were detected in all samples. Though the pattern of gene categories detected was similar for all time points, hierarchica lcluster of all functional genes and major functional categories all showed a time-serial pattern. Bacteria, archaea and fungi decreased by 96.1percent, 95.1percent and 91.3percent, respectively, after 15 h ozonation. Delta proteobacteria, which were reduced by 94.3percent, showed the highest resistance to ozonation while Actinobacteria, reduced by 96.3percent, showed the lowest resistance. Microorganisms similar to Rhodothermus, Obesumbacterium, Staphylothermus, Gluconobacter, and Enterococcus were dominant at all time points. Functional genes related to petroleum degradation decreased 1~;;2 orders of magnitude. Most of the key functional genes were still detected after ozonation, allowing a rapid recovery of the microbial community after ozonation. While ozone had a large impact on the indigenous soil microorganisms, a fraction of the key functional gene-containing microorganisms survived during ozonation and kept the community functional.« less

Shift in microbial group during remediation by enhanced natural attenuation (RENA) of a crude oil-impacted soil: a case study of Ikarama Community, Bayelsa, Nigeria.

PubMed

Chikere, Chioma Blaise; Azubuike, Christopher Chibueze; Fubara, Evan Miebaka

2017-06-01

Acute and chronic pollution of environments with crude oil does not bode well for biota living within the vicinity of polluted environments. This is due to environmental and public health concerns on the negative impact of crude oil pollution on living organisms. Enhancing microbial activities by adding nutrients and other amendments had proved effective in pollutant removal during bioremediation. This study was carried out to determine how microbial group respond during remediation by enhanced natural attenuation (RENA) during a field-scale bioremediation. Crude oil-polluted soil samples were collected (before, during, and after remediation) from a site undergoing remediation by enhanced natural attenuation (RENA) at Ikarama Community, Bayelsa State, Nigeria, and were analyzed for total petroleum hydrocarbon (TPH), polyaromatic hydrocarbon (PAH), and a shift in microbial community. The gas chromatography-flame ionization detector (GC-FID) results showed that the pollutant concentrations (TPH and PAH) reduced by 98 and 85%, respectively, after the remediation. Culturable hydrocarbon utilizing bacteria (CHUB) was highest (8.3 × 10 4 cfu/g) for sample collected during the remediation studies, whilst sample collected after remediation had low CHUB (6.1 × 10 4 cfu/g) compared to that collected before remediation (7.7 × 10 4 cfu/g). Analysis of 16S rRNA of the isolated CHUB showed they belonged to eight bacterial genera namely: Achromobacter, Alcaligenes, Azospirillus, Bacillus, Lysinibacillus, Ochrobactrum, Proteus, and Pusillimonas, with Alcaligenes as the dominant genus. In this study, it was observed that the bacterial community shifted from mixed group (Gram-positive and -negative) before and during the remediation, to only the latter group after the remediation studies. The betaproteobacteria groups were the dominant isolated bacterial phylotype. This study showed that RENA is an effective method of reducing pollutant concentration in crude oil-polluted sites, and could be applied to other polluted sites in the Niger Delta region of Nigeria to mitigate the devastating effects of crude oil pollution.

Cannabis constituents modulate δ9-tetrahydrocannabinol-induced hyperphagia in rats.

PubMed

Farrimond, Jonathan A; Hill, Andrew J; Whalley, Benjamin J; Williams, Claire M

2010-05-01

The hyperphagic effect of Delta9-tetrahydrocannabinol (Delta9THC) in humans and rodents is well known. However, no studies have investigated the importance of Delta9THC composition and any influence other non-Delta9THC cannabinoids present in Cannabis sativa may have. We therefore compared the effects of purified Delta9THC, synthetic Delta9THC (dronabinol), and Delta9THC botanical drug substance (Delta9THC-BDS), a Delta9THC-rich standardized extract comparable in composition to recreationally used cannabis. Adult male rats were orally dosed with purified Delta9THC, synthetic Delta9THC, or Delta9THC-BDS, matched for Delta9THC content (0.34-2.68 mg/kg). Prior to dosing, subjects were satiated, and food intake was recorded following Delta9THC administration. Data were then analyzed in terms of hourly intake and meal patterns. All three Delta9THC substances tested induced significant hyperphagic effects at doses >or=0.67 mg/kg. These effects included increased intake during hour one, a shorter latency to onset of feeding and a greater duration and consumption in the first meal. However, while some differences in vehicle control intakes were observed, there were significant, albeit subtle, differences in pattern of effects between the purified Delta9THC and Delta9THC-BDS. All Delta9THC compounds displayed classical Delta9THC effects on feeding, significantly increasing shortterm intake whilst decreasing latency to the first meal. We propose that the subtle adjustment to the meal patterns seen between the purified Delta9THC and Delta9THC-BDS are due to non-Delta9THC cannabinoids present in Delta9THC-BDS. These compounds and other non-cannabinoids have an emerging and diverse pharmacology and can modulate Delta9THC-induced hyperphagia, making them worth further investigation for their therapeutic potential.

Organophosphate pesticide in agricultural soils from the Yangtze River Delta of China: concentration, distribution, and risk assessment.

PubMed

Pan, Lili; Sun, Jianteng; Li, Zhiheng; Zhan, Yu; Xu, Shen; Zhu, Lizhong

2018-01-01

Organophosphorus pesticides (OPPs) are used worldwide and pose great risks to human health. However, information on their presence in agricultural soils at regional scale and the associated risks is limited. In this study, an extensive investigation on agricultural soils was conducted throughout the Yangtze River Delta (YRD) of China to reveal the status of OPP pollution. The total concentrations of the nine OPPs ranged from <3.0 to 521 ng g -1 dry weight, with a mean of 64.7 ng g -1 dry weight and a detection rate of 93 %. Dimethoate was found to be the primary compound, followed by methyl parathion and parathion. The highest concentrations of OPPs were found in Jiangsu province due to the intensive agricultural activities. The pollution of OPPs is also highly associated with the land use types. The lower concentrations of OPPs found in vegetable fields could be attributed to their easy photodegradation and hydrolysis in aerobic soils. There was no significant difference in microbial communities among the sample sites, indicating that OPPs in agricultural soils of the YRD region cause negligible effects on microbiota. The risks of OPPs in the soils to human health were further evaluated. The hazard indexes in all the soil samples were below 1, suggesting absence of non-cancer risks. This study provides valuable information for a better understanding of the pollution status of OPPs in agricultural soils and a scientific basis for soil quality assessments.

The Role of Thaumarchaeota in N2O generation in an unconfined basalt-sandstone aquifer system, Western Victoria (Australia)

NASA Astrophysics Data System (ADS)

Moreau, J. W.; Hepburn, E.

2015-12-01

The mechanisms by which nitrous oxide is produced and transformed in groundwater are poorly understood. Here we used GC-MS and nitrogen and oxygen isotope analyses to quantify nitrate, ammonia and nitrous oxide levels in nitrate-contaminated aquifers in the Newer Volcanics province of Western Victoria. Quantitative polymerase chain reaction (Q-PCR), and phylogenetic analyses of functional nitrogen-cycling and 16S rRNA genes, of whole community microbial DNA from groundwater samples obtained from different depths within different aquifers with low-flow pumping revealed nitrate, ammonia and nitrous oxide levels of up to ~40 mg/L, up to ~0.85 mg/L, and up to ~770 nM, respectively in several groundwater samples. Delta 15N and delta 18O values ranged from -2.68‰ to 68.19‰ and -3.37‰ to 26.83‰, respectively. Nitrate and nitrous oxide concentrations decreased with depth in the unconfined aquifer, while TOC generally increased. Higher ammonia levels were observed in more heavily ferruginized sandstones. Increaased nitrate and nitrous oxide levels were found within the principal basaltic aquifers. Q-PCR results showed variable concentrations of nir, nar, nos and amo genes associated with different redox transformations along the nitrification and denitrification pathways, indicating potential nitrous oxide formation via both pathways within different depths in the aquifer. 16S rRNA gene analyses implicated an important role for the Thaumarchaeota in groundwater nitrogen cycling.

Partitioning microbial respiration between jet fuel and native organic matter in an organic-rich long time-contaminated aquifer.

PubMed

Bugna, G C; Chanton, J P; Stauffer, T B; MacIntyre, W G; Libelo, E L

2005-07-01

The relative importance of jet fuel biodegradation relative to the respiration of natural organic matter in a contaminated organic-rich aquifer underlying a fire training area at Tyndall Air Force Base, Florida, USA was determined with isotopic measurements. Thirteen wells were sampled and analyzed for BTX (benzene, toluene, xylene), dissolved inorganic carbon (DIC) and CH4 concentrations, and delta13C and 14C of DIC. Results range from non-detectable to 3790 ppb, 1.4-24 mM, 0.2-776 microM, +5.8 per thousand to -22 per thousand, and from 52 to 99 pmc, respectively. Residual fuel was confined to two center wells underlying the fire training area. DIC and CH4 concentrations were elevated down-gradient of the contamination, but also at sites that were not in the apparent flow path of the contaminated groundwater. DIC exhibited greatest delta13C enrichment at highest DIC and CH4 concentrations indicating that CH4 production was an important respiration mode. Radiocarbon-depleted DIC was observed at sites with high hydrocarbon concentrations and down-gradient of the site. The results indicate that while natural attenuation was not rapidly reducing the quantity of free product overlying the aquifer at the site of contamination, it was at least constraining its flow away from the spill site. Apparently under the conditions of this study, BTX was degraded as rapidly as it was dissolved.

Orbital forcing in the early Miocene alluvial sediments of the western Ebro Basin, Northeast Spain

NASA Astrophysics Data System (ADS)

Garces, M.; Larrasoaña, J. C.; Muñoz, A.; Margalef, O.; Murelaga, X.

2009-04-01

Paleoclimatic reconstructions from terrestrial records are crucial to assess the regional variability of past climates. Despite the apparent direct connection between continental sedimentary environments and climate, interpreting the climatic signature in ancient non-marine sedimentary sequences is often overprinted by source-area related signals. In this regard, foreland basins appear as non-ideal targets as tectonically-driven subsidence and uplift play a major control on the distribution and evolution of sedimentary environments and facies. Foreland basins, however, often yield among the thickest and most continuous stratigraphic records available on continents. The Ebro Basin (north-eastern Spain) is of particular interest among the circum-mediterranean alpine foreland basins because it evolved into a land-locked closed basin since the late Eocene, leading to the accumulation of an exceptionally thick (>5500 m) and continuous sequence of alluvial-lacustrine sediments over a period of about 25 Myr. In this paper we present a detailed cyclostratigraphic study of a 115 m thick section in the Bardenas Reales de Navarra region (western Ebro Basin) in order to test orbital forcing in the Milankovitch frequency band. The study section corresponds to the distal alluvial-playa mud flats which developed in the central sector of the western Ebro Basin, with sediments sourced from both the Pyrenean and Iberian Ranges. Sediments consist of brown-red alluvial clay packages containing minor fine-grained laminated sandstones sheet-beds and channels, grey marls and thin bedded lacustrine limestones arranged in 10 to 20 m thick fining-upwards sequences. Red clayed intervals contain abundant nodular gypsum interpreted as representing a phase of arid and low lake level conditions, while grey marls and limestones indicate wetter intervals recording the expansion of the inner shallow lakes. A magnetostratigraphy-based chronology indicates that the Peñarroya section represents a time interval of about 500 kyr centered around chron C6r, although inferred absolute ages diverge depending on the assumed calibration of geomagnetic reversals with the astronomical time scale (Billups et al., 2004, Lourens et al., 2004). The section was sampled with a portable drill at regular intervals of about 30 cms, representing a time resolution of near 1 kyr. Spectral analysis of different measured parameters (lithology code, color, magnetic susceptibility and other rock magnetic parameters) revealed significant power at 20.4 m, 9.6 m and 4.2 m, which correspond to a ratio of 1:2.1:4.9 similar to that given by the Milankovitch cycles of eccentricity, obliquity and precession. Maximum power in the spetrum is focused in the eccentricity and obliquity bands while signal corresponding to precession is weakly expressed. The existing uncertainties in the astronomical tuning of the Early Miocene geomagnetic polarity time scale prevents us from using magnetostratigraphy to anchor the Peñarroya record with the astronomical solutions (Laskar et al., 2004). Instead, we have tried the expression of the eccentricity cycle to tune the Peñarroya section. We correlated the thick red clayed (dry phase) intervals with eccentricity minima, a phase relationship which is in agreement with that derived from earlier studies in marine and continental records from the Miocene of the Iberian plate (Abels et al., 2008, Sierro et al., 2000). The resulting tuning of the Peñarroya section yields an age for the base of geomagnetic chron C6r which fits with earlier work of Billups et al., (2004), while the top of C6r gives a significantly younger age. References Abels, H., Abdul Aziz, A., Calvo, J.P. and Tuenter, E., 2008. Shallow lacustrine carbonate microfacies document orbitally paced lake-level history in the Miocene Teruel Basin (North-East Spain), Sedimentology doi: 10.1111/j.1365-3091.2008.00976.x. Billups, K., Pälike, H., Channell, J.E.T., Zachos, J. and Shackleton, N.J., 2004. Astronomic calibration of the late Oligocene through early Miocene geomagnetic polarity time scale, Earth and Planetary Letters 224, 33-44. Laskar, J., Robutel, P., Joutel, F., Gastineau, M., Correia, A.C.M. and Levrard, B., 2004. A long-term numerical solution for the insolation quantities of the Earth, Astron. Astrophys. 428, 261-285. Lourens, L.J., Hilgen, F.J., Shackleton, N.J., Laskar, J. and Wilson, D.S., The Neogene Period, in: A Geologic Time Scale, F.M. Gradstein, J.G. Ogg and A. Smith, eds., pp. 409-440, Cambridge University Press, 2004. Sierro, F.J., Ledesma, S., Flores, J.A., Torrescusa, S. and Martinez Del Olmo, W., 2000. Sonic and gamma-ray astrochronology: cycle to cycle calibration of Atlantic climatic records to Mediterranean sapropels and astronomical oscillations, Geology 28, 695-698.

Diversity and biochemical features of culturable fungi from the coastal waters of Southern China

PubMed Central

2014-01-01

Fungi play a major role in various biogeochemical cycles of terrestrial and marine ecosystems. However, fungi in marine environments remain to be one of the most under-studied microbial groups. This study investigates the diversity of planktonic fungi from the coastal habitat off Pearl River Delta (China) using culture-dependent approach. A total of 22 fungi and 9 yeast isolates were recovered from 30 seawater and 2 sediment samples. Microscopic and ITS rRNA gene sequence analyses revealed that most of the fungi belonged to the phylum Ascomycota and Basidiomycota with a very small percentage (3%) of the subphylum Mucoromycotina of the Phylum Zygomycota. Most of these fungal isolates exhibited considerable production of extracellular enzymes, cellulase, lipase and laccase. Fungal isolates of two genera Mucor and Aspergillus sp. demonstrated pelletization capability over a wide range of pH, suggesting them as potential agents towards algae harvesting and wastewater treatment. PMID:25401065

Catalyzing action towards the sustainability of deltas: deltas as integrated socio-ecological systems and sentinels of regional and global change

NASA Astrophysics Data System (ADS)

Foufoula-Georgiou, E.; Tessler, Z. D.; Brondizio, E.; Overeem, I.; Renaud, F.; Sebesvari, Z.; Nicholls, R. J.; Anthony, E.

2016-12-01

Deltas are highly dynamic and productive environments: they are food baskets of the world, home to biodiverse and rich ecosystems, and they play a central role in food and water security. However, they are becoming increasingly vulnerable to risks arising from human activities, land subsidence, regional water management, global sea-level rise, and climate extremes. Our Belmont Forum DELTAS project (BF-DELTAS: Catalyzing actions towards delta sustainability) encompasses an international network of interdisciplinary research collaborators with focal areas in the Mekong, Ganges Brahmaputra, and the Amazon deltas. The project is organized around five main modules: (1) developing an analytical framework for assessing delta vulnerability and scenarios of change (Delta-SRES), (2) developing an open-acess, science-based integrative modeling framework for risk assessment and decision support (Delta-RADS), (3) developing tools to support quantitative mapping of the bio-physical and socio-economic environments of deltas and consolidate bio-physical and social data within shared data repositories (Delta-DAT), (4) developing Global Delta Vulnerability Indices (Delta-GDVI) that capture current and projected scenarios for major deltas around the world , and (5) collaborating with regional stakeholders to put the science, modeling, and data into action (Delta-ACT). In this talk, a research summary will be presented on three research domains around which significant collaborative work was developed: advancing biophysical classification of deltas, understanding deltas as coupled socio-ecological systems, and analyzing and informing social and environmental vulnerabilities in delta regions.

Organic Geochemistry of Sediments, Interstitial Fluids and Light Volatile Hydrocarbon Gases from Giza and North Alex Mud Volcanoes, Western Nile Deep-Sea Fan

NASA Astrophysics Data System (ADS)

Nuzzo, Marianne; Elvert, Marcus; Heuer, Verena; Schmidt, Mark; Hinrichs, Kai-Uwe; Scholz, Florian; Reitz, Anja; Hensen, Christian

2010-05-01

The West Nile Delta Project is a multi-disciplinary research project lead at IFM-GEOMAR (Kiel, Germany) and funded by RWE-DEA (Hamburg, Germany). It aims at investigating the sources and transport mechanisms of fluids and hydrocarbon gases seeping at two mud volcanoes (MVs) of the western Nile Deep-Sea Fan: North Alex and Giza MVs, and at the long-term monitoring of the seepage activity at these sites [1,2]. A comparative study of the organic geochemistry of sediments, gases and fluids was carried out in order to constrain (i) the sources of fluids, mud and gases erupted at these cold seeps, and (ii) the microbial hydrocarbon-oxidation processes associated with the extrusion of mud and gases. The molecular and stable isotope composition of light volatile hydrocarbon gases stripped from pore fluids reveal a clear thermogenic origin at the less active Giza MV and at the active centre of N. Alex MV. However, they probably originate from different sources, as shown by the distinct 13C-CH4 values of ~ -45‰ and -37‰VPDB at North Alex and Giza MVs, respectively, while 2H-CH4 values are similar (~ -228‰VSMOW). Away from the centre at North Alex MV the gases have variable compositions and are mainly produced by Archaea microbes. The microbial production of CH4 is probably sustained by the high content of the mud breccia sediments in labile organic matter. Indeed Total Organic Carbon content values are high (~ 1 and 2%weight) in MV sediments from both sites as well as at the reference site away from Giza MV, suggesting a main shallow (Plio-Pleistocene) sedimentary source. Consistently, the sedimentary lipids contain high amounts of compounds typically issued from terrestrial plants such as -amyrin and nC26:0 to nC30:0 fatty acids & alkenols. The hypothesis that labile terrestrial organic matter sustains intense microbial activity in the mud volcano sediments is supported by the extreme enrichment of pore fluids in a suite of Volatile Fatty Acids, in particular in acetic acid with values as high as 1 to 2mM at and near the centre of N. Alex MV. Additionally, the lipids extracted from MV sediments contain long-chain n-alkanes and biomarker compounds typically related to the presence of petroleum or bitumen as well as compounds associated with microbial communities living from the Anaerobic Oxidation of Methane. A large variety of these compounds have however been observed at the MVs, and their concentrations are quite variable as well. Here we present the results of multivariate statistical analyses applied to an extensive data set. Complementarily, Compound-Specific-Isotope-Analysis techniques have been used to study the origin of pore water Volatile Fatty Acids and of selected lipid biomarkers at Giza and North Alex MVs. Last, the information provided by geophysical imaging and heat flux measurements performed in the context of the West Nile Delta Project [1] has been taken into account to interpret the complex biogeochemical processes taking place at the MVs. [1] Feseker et al. (2008) RV Poseidon cruise report ISSN 1614-6298, IFM-GEOMAR, Kiel (Germany). [2] Bialas & Brϋckmann (2008) RV Pelagia 64PE298 WND Project cruise report, IFM-GEOMAR, Kiel (Germany), 52p.

Results of I Love My Sun Project 2014-2016

NASA Astrophysics Data System (ADS)

Mosna, Zbysek; Macusova, Eva; Kouba, Daniel; Blanch, Estefania; Humlova, Danka

2016-08-01

I Love My Sun is educational project for 4-11 years old children (primary schools). It started as European COST 724 project developed by the team of prof. Dr. Y. Tulunay. During the event, children first draw their idea of the Sun. After that, about 20 min long presentation and discussion is performed by a young scientist in the field of Space and Plasma Physics. Finally, the children use new knowledge, draw their new idea of the Sun and the pictures "before" and "after" are compared. Czech version of the project has been performed since September 2014 in 16 classes of Czech primary schools. Spanish version of the project has been performed at the Ebro Observatory with 60 pre-school children. Up to now we collected more than 300 pairs of pictures.

Color stability and degree of cure of direct composite restoratives after accelerated aging.

PubMed

Sarafianou, Aspasia; Iosifidou, Soultana; Papadopoulos, Triantafillos; Eliades, George

2007-01-01

This study evaluated the color changes and amount of remaining C = C bonds (%RDB) in three dental composites after hydrothermal- and photoaging. The materials tested were Estelite sigma, Filtek Supreme and Tetric Ceram. Specimens were fabricated from each material and subjected to L* a* b* colorimetry and FTIR spectroscopy before and after aging. Statistical evaluation of the deltaL,* deltaa,* deltab,* deltaE and %deltaRDB data was performed by one-way ANOVA and Tukey's test. The %RDB data before and after aging were statistically analyzed using two-way ANOVA and Student-Newman-Keuls test. In all cases an alpha = 0.05 significance level was used. No statistically significant differences were found in deltaL*, deltaa*, deltaE and %deltaRDB among the materials tested. Tetric Ceram demonstrated a significant difference in deltab*. All the materials showed visually perceptible (deltaE >1) but clinically acceptable values (deltaE < 3.3). Within each material group, statistically significant differences in %RDB were noticed before and after aging (p < 0.05). Filtek Supreme presented the lowest %RDB before aging, with Tetric Ceram presenting the lowest %RDB after aging (p < 0.05). The %deltaRDB mean values were statistically significantly different among all the groups tested. No correlation was found between deltaE and %deltaRDB.

The accent method of voice therapy: effect of accentuations on FO, SPL, and airflow.

PubMed

Kotby, M N; Shiromoto, O; Hirano, M

1993-12-01

The effect of the increased flow rate (delta U) in response to the Accent Method exercises on fundamental frequency (FO) and sound pressure level (SPL) was studied in three subjects (professionally trained, trained, and untrained in this method). In all the subjects, the rhythmic accentuated exercises produced a variable degree of increase in FO (delta FO) and SPL (delta SPL). The professionally trained subject showed greater delta FO and delta SPL in response to the delta U in the fastest tempo, which requires higher skills. Both trained subjects showed a greater correlation between delta U and both delta SPL and delta FO, as well as between delta FO and delta SPL, as compared to the untrained subject. The effects of the accentuated exercises on FO and SPL in response to the increased airflow rate (delta U) thus appear to demonstrate the treating effectiveness of the Accent Method.

Neo-Archaean Palaeo-Environmental Changes Determined by Microbial Activities Using Stable Isotopic Compositions.

NASA Astrophysics Data System (ADS)

Grassineau, N.; Yang, J.; Zerkle, A.; Nisbet, E. G.

2017-12-01

Reconstitution of Archaean environments can be challenging due to the lack of complete rock records and thermal overprinting, and information is then lost. Many past studies have been based on scattered results because of limited material available. They relate to very specific time "capsules" and it is not always appropriate to generalize the findings at a global scale. As now in the Phanerozoic, environmental variations existed in the Archaean and one model-fits-all can be misleading. Recent studies have uncovered how remarkably similar some of the conditions in the Archaean are to more recent periods. Each new Archaean locality adds to the general database to help to create a more complete picture, however a continuous record for one locality can bring more information because of its temporal and spatial context. Studying metabolisms of early life in Archaean is a very good approach to determine environmental conditions, and Greenstone Belts are the preferred formations to look for traces of life. Carbon and sulphur isotopes are important tools to study them, as metabolic processes leave isotopic fingerprints, which are often the only remaining evidence of biological activity. Study of carbon- and sulphur-rich cherts and dark shales of 2.7 to 2.65 Ga deposited in a sedimentary basin, from three well-preserved cores and coexisting stromatolites in the Belingwe Greenstone Belt (Zimbabwe), allows reconstitution of contemporary Archaean environments by determining how life responded to changes in its ecosystem. Overall ranges of 39‰ for delta13Cred and 40‰ for delta34S suggest a wide spectrum of bacterial activities. There is evidence of a change from aerobic to more anaerobic activity, most likely due to modification of the environmental conditions. New major and trace element data also confirm changes in the basin deposition with decrease in Al, K, Ba and Rb concentrations towards the upper sediments. These parameters indicate a deepening of the basin. The reducing environment corresponds to a lower sedimentation rate. Stable isotopic study of microbial activities in 3 cores determines spatial and temporal variation within the basin at different depths. Even in the Neo-Archaean, well established sulphur and carbon biological cycles allowed interactive bacterial communities to adapt to the changing environment.

Tides and deltaic morphodynamics

NASA Astrophysics Data System (ADS)

Plink-Bjorklund, Piret

2016-04-01

Tide-dominated and tide-influenced deltas are not widely recognized in the ancient record, despite the numerous modern and Holocene examples, including eight of the twelve modern largest deltas in the world, like the Ganges-Brahmaputra, Amazon, Chang Jiang, and Irrawadi. Furthermore, tide-dominated or tide-influenced deltas are suggested to be more common in inner-shelf or embayment settings rather than close to or at a shelf edge, primarily because wave energy is expected to be higher and tidal energy lower in outer shelf and shelf-edge areas. Thus, most shelf-edge deltas are suggested to be fluvial or wave dominated. However, there are ancient examples of tide-influenced shelf-edge deltas, indicating that the controls on tidal morphodynamics in deltas are not yet well understood. This paper asks the following questions: (1) How do tides influence delta deposition, beyond creating recognizable tidal facies? (2) Does tidal reworking create specific geometries in delta clinoforms? (3) Does tidal reworking change progradation rates of deltas? (4) Is significant tidal reworking of deltas restricted to inner-shelf deltas only? (5) What are the conditions at which deltas may be tidally influenced or tide-dominated in outer-shelf areas or at the shelf edge? (6) What are the main morphodynamic controls on the degree of tidal reworking of deltas? The paper utilizes a dataset of multiple ancient and modern deltas, situated both on the shelf and shelf edge. We show that beyond the commonly recognized shore-perpendicular morphological features and the recognizable tidal facies, the main effects of tidal reworking of deltas are associated with delta clinoform morphology, morphodynamics of delta lobe switching, delta front progradation rates, and the nature of the delta plain. Strong tidal influence is here documented to promote subaqueous, rapid progradation of deltas, by efficiently removing sediment from river mouth and thus reducing mouth bar aggradation and fluvial delta plain construction rates. Such subaqueous progradation of the delta front is decoupled from shoreline progradation. The delta plain of such tide-dominated deltas consists of a few distributary channels and tidal flats on top of the emerged tidal bars. The delta front clinoforms become gentler and longer, as ebb tidal currents together with river effluent efficiently transport sediment to the basin. Tide-dominated deltas tend to maintain a funnel shape and show low lobe switching rates, compared to fluvial-dominated and tide-influenced deltas. The funnel and thus river mouth position is further stabilized by fine-grained sediment accumulation on marginal tidal flats due to the flood current sediment transport. However, all these effect weaken as the deltas prograde to the shelf edge, due to the loss of vertical (and lateral) restriction and tidal amplification. Here significant tidal reworking tends to be restricted to topographic irregularities, caused by incision, delta-lobe or mouth bar deposition and avulsions, or tectonic processes. The role of such topographic restrictions is twofold, by reducing wave energy and amplifying tidal energy.

Plant delta 15N correlates with the transpiration efficiency of nitrogen acquisition in tropical trees.

PubMed

Cernusak, Lucas A; Winter, Klaus; Turner, Benjamin L

2009-11-01

Based upon considerations of a theoretical model of (15)N/(14)N fractionation during steady-state nitrate uptake from soil, we hypothesized that, for plants grown in a common soil environment, whole-plant delta(15)N (deltaP) should vary as a function of the transpiration efficiency of nitrogen acquisition (F(N)/v) and the difference between deltaP and root delta(15)N (deltaP - deltaR). We tested these hypotheses with measurements of several tropical tree and liana species. Consistent with theoretical expectations, both F(N)/v and deltaP - deltaR were significant sources of variation in deltaP, and the relationship between deltaP and F(N)/v differed between non-N(2)-fixing and N(2)-fixing species. We interpret the correlation between deltaP and F(N)/v as resulting from variation in mineral nitrogen efflux-to-influx ratios across plasma membranes of root cells. These results provide a simple explanation of variation in delta(15)N of terrestrial plants and have implications for understanding nitrogen cycling in ecosystems.

An analysis of the errors associated with the determination of atmospheric temperature from atmospheric pressure and density data

NASA Technical Reports Server (NTRS)

Minzner, R. A.

1976-01-01

A graph was developed for relating delta T/T, the relative uncertainty in atmospheric temperature T, to delta p/p, the relative uncertainty in the atmospheric pressure p, for situations, when T is derived from the slope of the pressure-height profile. A similar graph relates delta T/T to delta roh/rho, the relative uncertainty in the atmospheric density rho, for those cases when T is derived from the downward integration of the density-height profile. A comparison of these two graphs shows that for equal uncertainties in the respective basic parameters, p or rho, smaller uncertainties in the derived temperatures are associated with density-height rather than with pressure-height data. The value of delta T/T is seen to depend not only upon delta p or delta rho, and to a small extent upon the value of T or the related scale height H, but also upon the inverse of delta h, the height increment between successive observations of p or rho. In the case of pressure-height data, delta T/T is dominated by 1/delta h for all values of delta h; for density-height data, delta T/T is dominated by delta rho/rho for delta h smaller than about 5 km. In the case of T derived from density-height data, this inverse relationship between delta T/T and delta h applies only for large values of delta h, that is, for delta h 35 km. No limit exists in the fineness of usable height resolution of T which may be derived from densities, while a fine height resolution in pressure-height data leads to temperature with unacceptably large uncertainties.

PPARbeta/delta agonists modulate platelet function via a mechanism involving PPAR receptors and specific association/repression of PKCalpha--brief report.

PubMed

Ali, Ferhana Y; Hall, Matthew G; Desvergne, Béatrice; Warner, Timothy D; Mitchell, Jane A

2009-11-01

Peroxisome proliferator-activated receptor beta/delta (PPARbeta/delta) is a nuclear receptor found in platelets. PPARbeta/delta agonists acutely inhibit platelet function within a few minutes of addition. As platelets are anucleated, the effects of PPARbeta/delta agonists on platelets must be nongenomic. Currently, the particular role of PPARbeta/delta receptors and their intracellular signaling pathways in platelets are not known. We have used mice lacking PPARbeta/delta (PPARbeta/delta(-/-)) to show the effects of the PPARbeta/delta agonist GW501516 on platelet adhesion and cAMP levels are mediated specifically by PPARbeta/delta, however GW501516 had no PPARbeta/delta-specific effect on platelet aggregation. Studies in human platelets showed that PKCalpha, which can mediate platelet activation, was bound and repressed by PPARbeta/delta after platelets were treated with GW501516. These data provide evidence of a novel mechanism by which PPAR receptors influence platelet activity and thereby thrombotic risk.

Molecular analysis of human gamma/delta+ clones from thymus and peripheral blood

PubMed Central

1989-01-01

We analyzed the V gamma and V delta gene usage in TCR-gamma/delta- bearing T cell clones isolated from human peripheral blood and postnatal thymus using V-specific mAbs and Southern and Northern analyses. In peripheral blood most of the gamma/delta cells express the V gamma 9-JP-C gamma 1 chain paired with a delta chain bearing the V delta 2 gene product. This heterodimer is very rare in the postnatal thymus, where a different and less restricted pairing of V gamma 9 and V delta 2 chains is found. These findings indicate that physical constraints cannot explain the overrepresentation of a particular V gamma 9-JP/V delta 2 heterodimer in the peripheral blood, and we discuss alternative mechanisms that may account for this differential distribution. In addition, this analysis allowed us to map the specificity of the delta TCS1 mAb to V delta 1-J delta 1 and to identify at least five different expressed V delta genes. PMID:2572670

Space-for-time substitution and the evolution of submarine canyons in a passive, progradational margin.

NASA Astrophysics Data System (ADS)

Micallef, Aaron; Ribó, Marta; Canals, Miquel; Puig, Pere; Lastras, Galderic; Tubau, Xavier

2013-04-01

40% of submarine canyons worldwide are located in passive margins, where they constitute preferential conduits of sediment and biodiversity hotspots. Recent studies have presented evidence that submarine canyons incising passive, progradational margins can co-evolve with the adjacent continental slope during long-term margin construction. The stages of submarine canyon initiation and their development into a mature canyon-channel system are still poorly constrained, however, which is problematic when attempting to reconstruct the development of passive continental margins. In this study we analyse multibeam echosounder and seismic reflection data from the southern Ebro margin (western Mediterranean Sea) to document the stages through which a first-order gully develops into a mature, shelf-breaching canyon and, finally, into a canyon-channel system. This morphological evolution allows the application of a space-for-time substitution approach. Initial gully growth on the continental slope takes place via incision and downslope elongation, with limited upslope head retreat. Gravity flows are the main driver of canyon evolution, whereas slope failures are the main agent of erosion; they control the extent of valley widening, promote tributary development, and their influence becomes more significant with time. Breaching of the continental shelf by a canyon results in higher water/sediment loads that enhance canyon development, particularly in the upper reaches. Connection of the canyon head with a paleo-river changes evolution dynamics significantly, promoting development of a channel and formation of depositional landforms. Morphometric analyses demonstrate that canyons develop into geometrically self-similar systems that approach steady-state and higher drainage efficiency. Canyon activity in the southern Ebro margin is pulsating and enhanced during sea level lowstands. Rapid sedimentation by extension of the palaeo-Millars River into the outermost shelf and upper slope is inferred as the source of gravity flows driving canyon evolution. Canyon morphology is shown to be maintained over the course of more than one fall and rise in sea-level. Our model of canyon evolution is applicable to other passive margins (e.g. Argentine continental margin).

Occurrence of sulfonamide residues along the Ebro River basin: removal in wastewater treatment plants and environmental impact assessment.

PubMed

García-Galán, M Jesús; Díaz-Cruz, M Silvia; Barceló, Damià

2011-02-01

Sulfonamides (SAs) have become one of the antibiotic families most frequently found in all kind of environmental waters. In the present work, the presence of 16 SAs and one of their acetylated metabolites in different water matrices of the Ebro River basin has been evaluated during two different sampling campaigns carried out in 2007 and 2008. Influent and effluent samples from seven wastewater treatment plants (WWTPs), together with a total of 28 river water samples were analyzed by on-line solid phase extraction-liquid chromathography-tandem mass spectrometry (on-line SPE-LC-MS/MS). Sulfamethoxazole and sulfapyridine were the SAs most frequently detected in WWTPs (96-100%), showing also the highest concentrations, ranging from 27.2 ng L(-1) to 596 ng L(-1) for sulfamethoxazole and from 3.7 ng L(-1) to 227 ng L(-1) for sulfapyridine. Sulfamethoxazole was also the SA most frequently detected in surface waters (85% of the samples) at concentrations between 11 ng L(-1) and 112 ng L(-1). In order to assess the effectiveness of the wastewater treatment in degrading SAs, removal efficiencies in the seven WWTPs were calculated for each individual SA (ranging from 4% to 100%) and correlated to the corresponding hydraulic retention times or residence times of the SAs in the plants. SAs half-lives were also estimated, ranging from to 2.5 hours (sulfadimethoxine) to 128 h (sulfamethazine). The contribution of the WWTPs to the presence of SAs depends on both the load of SAs discharging on the surface water from the WWTP effluent but also on the flow of the receiving waters in the discharge sites and the dilution exerted; WWTP4 exerts the highest pressure on the receiving water course. Finally, the potential environmental risk posed by SAs was evaluated calculating the hazard quotients (HQ) to different non-target organisms in effluent and river water. The degree of susceptibility resulted in algae>daphnia>fish. Sulfamethoxazole was the only SA posing a risk to algae in effluent water, with an HQ>7. Copyright © 2010 Elsevier Ltd. All rights reserved.

Organochlorine compounds in European catfish (Silurus glanis) living in river areas under the influence of a chlor-alkali plant (Ebro River basin).

PubMed

Huertas, David; Grimalt, Joan O; Benito, Josep; Benejam, Lluís; García-Berthou, Emili

2016-01-01

European catfish, Silurus glanis, were used as sentinel organisms of the influence of recent and past discharges of organochlorine compounds (OCs) from a chlor-alkali plant located in the Ebro River. The fish concentrations of hexachlorobenzene (HCB), polychlorobiphenyls (PCBs) and DDTs were very high along the last 100 km of the river, including the irrigation channels, e.g. 1.2-27 ng/g wet weight of HCB, 6.3-100 ng/g ww of PCBs and 1-270 ng/g ww of total DDT compounds. These concentrations were much higher than those found upstream from the chlor-alkali discharge site, 0.2 ng/g ww for HCB, 5.6 ng/g ww for PCBs and 7.5 ng/g for DDT compounds. These concentrations were also standing out among those previously described in this fish species. The European catfish collected in sites under lower water flows, Ribarroja reservoir and irrigation channels, showed higher muscle lipid content, 1.09-7.2%, than those from sites of higher current intensities, river bed, 0.27%-0.67%. In these lower water current areas catfish exhibited OC ww concentrations that were correlated to % lipids. These differences suggest that normalization to lipid content is necessary for comparison of the OC accumulation in specimens from riverine systems living under different flow intensities. Accordingly, OC concentrations referred to lipid content showed more uniform downriver distribution which was consistent with a single focal point as main source of these compounds for the European catfish collected in the last 100 km of river stretch. This geographic distribution was also consistent with the uniform composition of PCB congeners in the studied European catfish. The distribution of DDT compounds was predominated by 4,4'-DDE which is common in most currently examined fish from aquatic environments. However, it included a high proportion of 4,4'-DDD and 2,4'-DDD which was consistent with the high contribution of benthic organisms from anoxic environments in the diet of these fish. Copyright © 2015 Elsevier B.V. All rights reserved.

DELTAS: A new Global Delta Sustainability Initiative (Invited)

NASA Astrophysics Data System (ADS)

Foufoula-Georgiou, E.

2013-12-01

Deltas are economic and environmental hotspots, food baskets for many nations, home to a large part of the world population, and hosts of exceptional biodiversity and rich ecosystems. Deltas, being at the land-water interface, are international, regional, and local transport hubs, thus providing the basis for intense economic activities. Yet, deltas are deteriorating at an alarming rate as 'victims' of human actions (e.g. water and sediment reduction due to upstream basin development), climatic impacts (e.g. sea level rise and flooding from rivers and intense tropical storms), and local exploration (e.g. sand or aggregates, groundwater and hydrocarbon extraction). Although many efforts exist on individual deltas around the world, a comprehensive global delta sustainability initiative that promotes awareness, science integration, data and knowledge sharing, and development of decision support tools for an effective dialogue between scientists, managers and policy makers is lacking. Recently, the international scientific community proposed to establish the International Year of Deltas (IYD) to serve as the beginning of such a Global Delta Sustainability Initiative. The IYD was proposed as a year to: (1) increase awareness and attention to the value and vulnerability of deltas worldwide; (2) promote and enhance international and regional cooperation at the scientific, policy, and stakeholder level; and (3) serve as a launching pad for a 10-year committed effort to understand deltas as complex socio-ecological systems and ensure preparedness in protecting and restoring them in a rapidly changing environment. In this talk, the vision for such an international coordinated effort on delta sustainability will be presented as developed by a large number of international experts and recently funded through the Belmont Forum International Opportunities Fund. Participating countries include: U.S., France, Germany, U.K., India, Japan, Netherlands, Norway, Brazil, Bangladesh, Vietnam, and Canada. Key components of the DELTAS Sustainability Initiative are: integrated research on deltas as coupled socio-ecological systems undergoing change (Delta-SRES), a global delta data depository (Delta-DAT), a suite of open access delta risk assessment and decision support modeling tools (Delta-RADS), and the coordinated demonstration of these activities in deltas around the world (Delta-ACT).

Tuning metal-to-metal charge transfer of mixed-valence complexes containing ferrocenylpyridine and rutheniumammines via solvent donicity and substituent effects.

PubMed

Chen, Y J; Kao, C H; Lin, S J; Tai, C C; Kwan, K S

2000-01-24

A homogeneous series of heterobimetallic complexes of [R-Fc(4-py)Ru(NH3)5](PF6)2 (R = H, Et, Br, acetyl; Fc(4-py) = 4-ferrocenylpyridine) have been prepared and characterized. The mixed-valence species generated in situ using ferrocenium hexafluorophosphate as the oxidant show class II behavior, and the oxidized sites are ruthenium centered. deltaE(1/2), E(1/2)(Fe(III)/Fe(II)) - E(1/2)(Ru(III)/Ru(II)), an upper limit for deltaGo that is an energetic difference between the donor and acceptor sites, changes sharply and linearly with Gutmann solvent donor number (DN) and Hammett substituent constants (sigma). The solvent-dependent and substituent-dependent intervalence transfer bands were found to vary almost exclusively with deltaE(1/2). The activation energy for the optical electron transfer versus deltaE(1/2) plot yields a common nuclear reorganization energy (lambda) of 0.74 +/- 0.04 eV for this series. The equation that allows one to incorporate the effect of both solvent donicity and substituents on optical electron transfer is Eop = lambda + deltaGo, where deltaGo = (deltaGo)intrinsic + (deltaGo)solvent donicity + (deltaGo)substituent effect (deltaGo )intinnsic with a numerical value of 0.083 +/- 0.045 eV was obtained from the intercept of the deltaE(1/2) of [H-Fc(4-py)Ru(NH3)5]2+,3+,4+ versus DN plot. (deltaGo)solvent donicity was obtained from the average slopes of the deltaE(1/2) of [R-Fc-(4-py)Ru(NH3)5]2+,3+,4+ versus DN plot, and (deltaGo)substituent effect was obtained from the average slopes of the corresponding deltaE(1/2) versus sigma plot. The empirical equation allows one to finely tune Eop of this series to Eop = 0.82 + 0.019(DN) + 0.44sigma eV at 298 K, and the discrepancy between the calculated and experimental data is less than 6%.

Controls on delta formation, area, and topset slope: New predictive relationships developed using a global delta dataset

NASA Astrophysics Data System (ADS)

Caldwell, R. L.; Edmonds, D. A.; Baumgardner, S. E.; Paola, C.; Roy, S.; Nienhuis, J.

2017-12-01

River deltas are irreplaceable natural and societal resources, though they are at risk of drowning due to sea-level rise and decreased sediment delivery. To enhance hazard mitigation efforts in the face of global environmental change, we must understand the controls on delta growth. Previous empirical studies of delta growth are based on small datasets and often biased towards large, river-dominated deltas. We are currently lacking relationships that predict delta formation, area, or topset slope across the full breadth of global deltas. To this end, we developed a global dataset of 5,229 rivers (with and without deltas) paired with nine upstream (e.g., sediment discharge) and four downstream (e.g., wave height) environmental variables. Using Google Earth imagery, we identify all coastal river mouths (≥ 50 m wide) connected to an upstream catchment, and define deltas as river mouths that split into two or more distributary channels, end in a depositional protrusion from the shoreline, or do both. Delta area is defined as the area of the polygon connecting the delta node, two lateral shoreline extent points, and the basinward-most extent of the delta. Topset slope is calculated as the average, linear slope from the delta node elevation (extracted from SRTM data) to the main channel mouth, and shoreline and basinward extent points. Of the 5,229 rivers in our dataset, 1,816 (35%) have a delta. Using 495 rivers (those with data available for all variables), we build an empirically-derived relationship that predicts delta formation with 76% success. Delta formation is controlled predominantly by upstream water and sediment discharge, with secondary control by downstream waves and tides that suppress delta formation. For those rivers that do form deltas, we show that delta area is best predicted by sediment discharge, bathymetric slope, and drainage basin area (R2 = 0.95, n = 170), and exhibits a negative power-law relationship with topset slope (R2 = 0.85, n = 1,342). Topset slope is best predicted by grain size and wave height (R2 = 0.50, n = 358). These empirical relationships can aid in forecasting delta response to continued global environmental change.

Influence of different organic fertilizers on quality parameters and the delta(15)N, delta(13)C, delta(2)H, delta(34)S, and delta(18)O values of orange fruit (Citrus sinensis L. Osbeck).

PubMed

Rapisarda, Paolo; Camin, Federica; Fabroni, Simona; Perini, Matteo; Torrisi, Biagio; Intrigliolo, Francesco

2010-03-24

To investigate the influence of different types of fertilizers on quality parameters, N-containing compounds, and the delta(15)N, delta(13)C, delta(2)H, delta (34)S, and delta(18)O values of citrus fruit, a study was performed on the orange fruit cv. 'Valencia late' (Citrus sinensis L. Osbeck), which was harvested in four plots (three organic and one conventional) located on the same farm. The results demonstrated that different types of organic fertilizers containing the same amount of nitrogen did not effect important changes in orange fruit quality parameters. The levels of total N and N-containing compounds such as synephrine in fruit juice were not statistically different among the different treatments. The delta(15)N values of orange fruit grown under fertilizer derived from animal origin as well as from vegetable compost were statistically higher than those grown with mineral fertilizer. Therefore, delta(15)N values can be used as an indicator of citrus fertilization management (organic or conventional), because even when applied organic fertilizers are of different origins, the natural abundance of (15)N in organic citrus fruit remains higher than in conventional ones. These treatments also did not effect differences in the delta(13)C, delta(2)H, delta(34)S, and delta(18)O values of fruit.

Welcome to CALFED Bay-Delta Program

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Spectral contaminant identifier for off-axis integrated cavity output spectroscopy measurements of liquid water isotopes

DOE Office of Scientific and Technical Information (OSTI.GOV)

Brian Leen, J.; Berman, Elena S. F.; Gupta, Manish

Developments in cavity-enhanced absorption spectrometry have made it possible to measure water isotopes using faster, more cost-effective field-deployable instrumentation. Several groups have attempted to extend this technology to measure water extracted from plants and found that other extracted organics absorb light at frequencies similar to that absorbed by the water isotopomers, leading to {delta}{sup 2}H and {delta}{sup 18}O measurement errors ({Delta}{delta}{sup 2}H and {Delta}{delta}{sup 18}O). In this note, the off-axis integrated cavity output spectroscopy (ICOS) spectra of stable isotopes in liquid water is analyzed to determine the presence of interfering absorbers that lead to erroneous isotope measurements. The baseline offsetmore » of the spectra is used to calculate a broadband spectral metric, m{sub BB}, and the mean subtracted fit residuals in two regions of interest are used to determine a narrowband metric, m{sub NB}. These metrics are used to correct for {Delta}{delta}{sup 2}H and {Delta}{delta}{sup 18}O. The method was tested on 14 instruments and {Delta}{delta}{sup 18}O was found to scale linearly with contaminant concentration for both narrowband (e.g., methanol) and broadband (e.g., ethanol) absorbers, while {Delta}{delta}{sup 2}H scaled linearly with narrowband and as a polynomial with broadband absorbers. Additionally, the isotope errors scaled logarithmically with m{sub NB}. Using the isotope error versus m{sub NB} and m{sub BB} curves, {Delta}{delta}{sup 2}H and {Delta}{delta}{sup 18}O resulting from methanol contamination were corrected to a maximum mean absolute error of 0.93 per mille and 0.25 per mille respectively, while {Delta}{delta}{sup 2}H and {Delta}{delta}{sup 18}O from ethanol contamination were corrected to a maximum mean absolute error of 1.22 per mille and 0.22 per mille . Large variation between instruments indicates that the sensitivities must be calibrated for each individual isotope analyzer. These results suggest that the properly calibrated interference metrics can be used to correct for polluted samples and extend off-axis ICOS measurements of liquid water to include plant waters, soil extracts, wastewater, and alcoholic beverages. The general technique may also be extended to other laser-based analyzers including methane and carbon dioxide isotope sensors.« less

Natural and anthropogenic influences on depositional architecture of the Ural Delta, Kazakhstan, northern Caspian Sea, during the past 70 years

NASA Astrophysics Data System (ADS)

Scarelli, Frederico M.; Cantelli, Luigi; Barboza, Eduardo G.; Gabbianelli, Giovanni

2017-05-01

This paper focuses on the Ural Delta in the northern zone of the Caspian Sea, an area with particular characteristics, where intense influence from anthropogenic and natural factors exists, which acts on the fragile delta system. We built a database to integrate the data from the published sources, bathymetric survey, and recent images in the geographical information system (GIS) environment. The results were linked to the Caspian Sea level (CSL) curve, which had many variations, changing the Ural Delta system's dynamics and in its architecture. In addition, the anthropogenic changes contribute to shaping the actual Ural Delta architecture. Through the link between the results and CSL, we reconstructed an evolution model for the Ural Delta system for the last century and identified three different architectures for the Ural Delta, determined by the energy that acted on the system in the last century and by the anthropogenic changes. This work identifies six different delta phases, which are shaped by CSL changes during the last 70 years and by anthropogenic changes. The delta phases recognized are: i) a Lobate Delta phase, shaped during high CSL before 1935; ii) Natural Elongate Delta 1935-1950 formed during rapid CSL fall; iii) Anthropogenic Elongate Delta 1950-1966, formed during rapid CSL fall and after the Ural-Caspian Sea canal construction, which modified the sedimentary deposition on the delta; iv) Anthropogenic Elongate Delta 1966-1982 shaped during low CSL phase; v) Anthropogenic Elongate Delta 1982-1996 formed during a rapid CSL rise phase; and vi) Anthropogenic Elongate Delta 1996-2009 shaped during high CSL that represent the last phase and actual Ural Delta architecture.

Rectal bioavailability of delta-9-tetrahydrocannabinol from the hemisuccinate ester in monkeys.

PubMed

ElSohly, M A; Stanford, D F; Harland, E C; Hikal, A H; Walker, L A; Little, T L; Rider, J N; Jones, A B

1991-10-01

Oral administration of delta-9-tetrahydrocannabinal (delta 9-THC) was shown to result in low and erratic bioavailability, while the drug showed no bioavailability from various suppository formulations. delta 9-THC-Hemisuccinate was formulated as a prodrug for delta 9-THC in suppositories using Witepsol H15 base. The bioavailability of delta 9-THC from this formulation was evaluated in monkeys. The plasma levels of delta 9-THC and its metabolite 11-nor-delta 9-THC-9-COOH were determined using GC/MS analysis. The calculated bioavailability of delta 9-THC from this formulation was found to be 13.5%. Non-compartmental analysis of the plasma concentration data using statistical moments showed the mean residence time (MRT) for delta 9-THC in the body to be 3 h following iv administration of delta 9-THC or its hemisuccinate ester (3.4 and 2.7 h, respectively), as compared with 5.8 h following rectal administration of the delta 9-THC hemisuccinate. The observed rectal bioavailability of delta 9-THC from suppositories containing the hemisuccinate ester as a prodrug is of significant importance in developing an alternative approach to oral administration of the drug.

Ratio of entropy to enthalpy in thermal transitions in biological tissues.

PubMed

Jacques, Steven L

2006-01-01

Thermal transitions in biological tissues that have been reported in the literature are summarized in terms of the apparent molar entropy (DeltaS) and molar enthalpy (DeltaH) involved in the transition. A plot of DeltaS versus DeltaH for all the data yields a straight line, consistent with the definition of free energy, DeltaG=DeltaH+TDeltaS. Various bonds may be involved in cooperative bond breakage during thermal transitions; however, for the sake of description, the equivalent number of cooperative hydrogen bonds can be cited. Most of the tissue data behave as if 10 to 20 hydrogen bonds are cooperatively broken during coagulation, with one transition, the expression of heat shock protein, involving 90 cooperative hydrogen bonds. The data are consistent with DeltaS=a+bDeltaH, where a=-327.5 J(mol K) and b=31.47 x 10(-4) K(-1). If each additional hydrogen bond adds 19 x 10(3) Jmol to DeltaH, then each additional bond adds 59.8 J(mol K) to DeltaS. Hence, the dynamics of irreversible thermal transitions can be described in terms of one free parameter, the apparent number of cooperative hydrogen bonds broken during the transition.

Investigations into the \\delta 15N and \\delta 13C of POM, Primary Producers, and Filter Feeders in the Florida Keys Coral Reef Tract

NASA Astrophysics Data System (ADS)

Lamb, K. A.; Swart, P. K.

2004-12-01

In order to examine the possible influences of anthropogenic wastes on the Florida Keys coral reef tract, water column particulate organic matter \\(POM\\), primary producers, and filter feeders were sampled from within the coastal waters of the reef tract, and analyzed for \\delta 15N and \\delta 13C isotopic composition. The POM was found to have a mean \\delta 15N value of +4.13\\permil (\\pm 1.03\\permil\\) and a mean \\delta 13C value of -19.93\\permil (\\pm 0.58\\permil). The \\delta 13C values for POM across the entire reef tract were heavier inshore \\(avg \\delta 13C = -18.29\\permil \\(\\pm 1.04\\permil\\)\\) and became lighter offshore \\(avg \\delta 13C = -21.41\\permil \\(\\pm 0.89\\permil\\)\\), which is consistent with influences from benthic algae/seagrass closer to shore in contrast to open-marine influences offshore. The \\delta 15N values for POM were neither temporally nor spatially interrelated, as the data showed no clear trend moving in either the inshore or offshore direction. Instead, our \\delta 15N values for POM reflect a combined influence from nitrogen fixation \\(\\approx0\\permil\\), zooplankton and other suspended particles, and not anthropogenic wastes \\(>+10\\permil\\), as other authors claim. The mean isotopic composition of various primary producers suggests a nitrogen fixation source of nutrients to the reef system (Halimeda sp. (\\delta 15N = 2.43\\permil; \\delta 13C = -18.04\\permill), Dictyota sp. (\\delta 15N = +2.86\\permil; \\delta 13C = -16.30\\permil), Thalassia sp. (\\delta 15N = 2.39\\permil; \\delta 13C = -10.32\\permil)), while filter feeders were found to have a mean isotopic composition more similar to POM values (sponge \\delta 15N = 4.95\\permil; \\delta 13C = -18.02\\permil). Our data simply do not appear to show evidence of anthropogenic influence on the Florida Keys reef tract. Further more, we suggest that \\delta 15N values of +4\\permil, which have recently been suggested to indicate anthropogenic influences are not, in fact, indicative of sewage.

Evaluation of polymerization-dependent changes in color and translucency of resin composites using two formulae.

PubMed

Paravina, Rade D; Kimura, Mikio; Powers, John M

2005-09-01

The aim of this study was to evaluate polymerization-dependent changes in the color and translucency parameter (TP) of resin composites and to compare results obtained using two color-difference metric formulae, CIELAB and CIEDE 2000. Twenty-eight shades of commercial resin composites were analyzed. Specimens (n = 5) were made as discs, 11 mm in diameter and 2-mm thick, using cylindrical molds. Data were collected before and after composite polymerization, using a spectrophotometer. In regard to in vitro color changes of composites (DeltaE*) a DeltaE76 of 3.7 or greater was considered to be an unacceptable color change. Data were analyzed by analysis of variance, and Fisher's protected least significant difference (PLSD) intervals for comparison of means were calculated at the 0.05 level of significance. Mean polymerization-dependent differences in color were DeltaE00 = 4.48 (2.11) and DeltaE76 = 5.51 (2.68). The DeltaTP00 range was 2.57, while the DeltaTP76 range was 2.89. Mean polymerization-dependent differences in translucency were DeltaTP00 = 0.84 (0.77) and DeltaTP76 = 0.87 (0.76). Analysis of variance showed significant differences among composites, shades, and their interactions (P < 0.0001; power = 1.0). Regression equations and r values for the two color-difference formulae and all evaluated TP values showed very strong correlation. In conclusion, within the limitations of this study, polymerization-dependent changes in color and translucency were highly varied. The majority of shades showed polymerization-dependent differences in color higher than the DeltaE76 = 3.7. The TP generally increased after light polymerization by light activation. The very strong correlation (r > 0.97) between the two color-difference formulae indicates that the limitations of the CIELAB system do not appear to be a problem when evaluating composites; however, recorded differences between DeltaE76 and DeltaE00 values stress the importance of data conversion.

Developing a Truly Global Delta Database to Assess Delta Morphology and Morphodynamics

NASA Astrophysics Data System (ADS)

Caldwell, R. L.; Edmonds, D. A.; Baumgardner, S. E.; Whaling, A.

2015-12-01

Delta morphology reflects the interplay of various environmental parameters, though these relationships have only been tested on small datasets with 30-50 deltas. These datasets are biased toward the largest deltas, which typically have compound morphologies, form on passive margins, and may not be representative of the full breadth in delta morphology. With the goal of building more robust predictions of delta morphology to enhance hazard mitigation and resiliency planning, we have developed a truly global delta database including every delta on the world's marine coastlines. Using Google Earth imagery, we first identified all fluvial river mouths (≥ 50 m wide) connected to an upstream catchment. Deltas are defined geomorphically as river mouths that split into two or more active or relict distributary channels, end in a depositional protrusion from the shoreline, or do both. In our database we identified 5,801 river mouths, and 1,426 of those coastal rivers (~25%) have a geomorphic delta. ~75% of deltas exhibit an active or relict distributary network, while the remaining ~25% are single channel deltas with a basinward protrusion. Preliminary morphometric analysis (ratio of shore-parallel width, W, to shore-perpendicular length, L) on a subset of 159 deltas suggests W:L values range from 0.52 (elongate) to 23.6 (broad/cuspate). The median W:L value is 2.68, suggesting the majority of deltas are roughly semi-circular (W:L = 2), and the distribution is heavily skewed to the broad/cuspate deltas (~28% are >4 times wider than they are long). Preliminary comparison to downstream significant wave height data shows that the 'wider' deltas relate to higher wave heights (R2 = 0.42), though the data are scattered. Ultimately, the database will include additional measured morphometrics, including number of channel mouths and delta area, and morphodynamic data derived from serial Landsat imagery.

Metagenomic Analysis Indicates Epsilonproteobacteria as a Potential Cause of Microbial Corrosion in Pipelines Injected with Bisulfite

PubMed Central

An, Dongshan; Dong, Xiaoli; An, Annie; Park, Hyung S.; Strous, Marc; Voordouw, Gerrit

2016-01-01

Sodium bisulfite (SBS) is used as an oxygen scavenger to decrease corrosion in pipelines transporting brackish subsurface water used in the production of bitumen by steam-assisted gravity drainage. Sequencing 16S rRNA gene amplicons has indicated that SBS addition increased the fraction of the sulfate-reducing bacteria (SRB) Desulfomicrobium, as well as of Desulfocapsa, which can also grow by disproportionating sulfite into sulfide, sulfur, and sulfate. SRB use cathodic H2, formed by reduction of aqueous protons at the iron surface, or use low potential electrons from iron and aqueous protons directly for sulfate reduction. In order to reveal the effects of SBS treatment in more detail, metagenomic analysis was performed with pipe-associated solids (PAS) scraped from a pipe section upstream (PAS-616P) and downstream (PAS-821TP) of the SBS injection point. A major SBS-induced change in microbial community composition and in affiliated hynL genes for the large subunit of [NiFe] hydrogenase was the appearance of sulfur-metabolizing Epsilonproteobacteria of the genera Sulfuricurvum and Sulfurovum. These are chemolithotrophs, which oxidize sulfide or sulfur with O2 or reduce sulfur with H2. Because O2 was absent, this class likely catalyzed reduction of sulfur (S0) originating from the metabolism of bisulfite with cathodic H2 (or low potential electrons and aqueous protons) originating from the corrosion of steel (Fe0). Overall this accelerates reaction of of S0 and Fe0 to form FeS, making this class a potentially powerful contributor to microbial corrosion. The PAS-821TP metagenome also had increased fractions of Deltaproteobacteria including the SRB Desulfomicrobium and Desulfocapsa. Altogether, SBS increased the fraction of hydrogen-utilizing Delta- and Epsilonproteobacteria in brackish-water-transporting pipelines, potentially stimulating anaerobic pipeline corrosion if dosed in excess of the intended oxygen scavenger function. PMID:26858705

Impacts of fire on nitrogen cycling in aquatic and terrestrial ecosystems in the Yukon-Kuskokwim River Delta, AK

NASA Astrophysics Data System (ADS)

Schade, J. D.; Jardine, L. E.; Bristol, E. M.; Navarro-Perez, E.; Melton, S.; Jimmie, J. A.; Natali, S.; Mann, P. J.; Holmes, R. M.

2016-12-01

Global climate change is having a disproportionate impact on northern high latitudes, including rapid increases in temperature, changes in precipitation, and increasing fire frequency and severity. Wildfires have been shown to strongly influence ecosystem processes through acceleration of permafrost thaw and increased nitrogen (N) availability, the effects of which may increase gaseous loss of carbon (C) to the atmosphere, increase primary production by alleviating N limitation, or both. The extent of these fire impacts has not been well-documented in the Arctic, particularly in areas of discontinuous permafrost. In 2015, the Yukon-Kuskokwim River Delta (YK Delta) in southwestern Alaska experienced the largest fire season in recorded history, providing an opportunity to study wildfire impacts on an area particularly vulnerable to permafrost thaw. Our objectives were to study the impacts of these fires on nitrogen availability in a range of land cover classes, including peat plateaus, channel fens, and aquatic ecosystems distributed across the landscapes. We sampled soils from several vegetation patches on burned and unburned peat plateaus, and soil and surface waters from fens, small ponds, and streams downslope of these sites. All water samples were filtered through GFF filters in the field. Soils were transported frozen to the Woods Hole Research Center and extracted in KCl. All water samples and extracts were analyzed for NH4 and NO3 concentrations. We found substantially higher concentrations of extractable NH4 in burned soils, but very little extractable NO3 in either burned or unburned soils. Water samples also showed higher NH4 in aquatic ecosystems in burned watersheds, but, in contrast to soils, showed relatively high NO3 concentrations, particularly in waters from lower landscape positions. Overall, aquatic ecosystems exhibited higher NO3: NH4 ratios than soil extractions, and increasing NO3: NH4 downslope. These results suggest significant export of nitrogen after fire and the potential for nitrification as N is transported across the landscape. These changes in N cycling are likely to have substantial consequences for the recovery of plant communities post-fire and for microbial processes and greenhouse gas fluxes, including N2O, from burned watersheds.

Impacts of fire on nitrogen cycling in aquatic and terrestrial ecosystems in the Yukon-Kuskokwim River Delta, AK

NASA Astrophysics Data System (ADS)

Schade, J. D.; Jardine, L. E.; Bristol, E. M.; Navarro-Perez, E.; Melton, S.; Jimmie, J. A.; Natali, S.; Mann, P. J.; Holmes, R. M.

2017-12-01

Global climate change is having a disproportionate impact on northern high latitudes, including rapid increases in temperature, changes in precipitation, and increasing fire frequency and severity. Wildfires have been shown to strongly influence ecosystem processes through acceleration of permafrost thaw and increased nitrogen (N) availability, the effects of which may increase gaseous loss of carbon (C) to the atmosphere, increase primary production by alleviating N limitation, or both. The extent of these fire impacts has not been well-documented in the Arctic, particularly in areas of discontinuous permafrost. In 2015, the Yukon-Kuskokwim River Delta (YK Delta) in southwestern Alaska experienced the largest fire season in recorded history, providing an opportunity to study wildfire impacts on an area particularly vulnerable to permafrost thaw. Our objectives were to study the impacts of these fires on nitrogen availability in a range of land cover classes, including peat plateaus, channel fens, and aquatic ecosystems distributed across the landscapes. We sampled soils from several vegetation patches on burned and unburned peat plateaus, and soil and surface waters from fens, small ponds, and streams downslope of these sites. All water samples were filtered through GFF filters in the field. Soils were transported frozen to the Woods Hole Research Center and extracted in KCl. All water samples and extracts were analyzed for NH4 and NO3 concentrations. We found substantially higher concentrations of extractable NH4 in burned soils, but very little extractable NO3 in either burned or unburned soils. Water samples also showed higher NH4 in aquatic ecosystems in burned watersheds, but, in contrast to soils, showed relatively high NO3 concentrations, particularly in waters from lower landscape positions. Overall, aquatic ecosystems exhibited higher NO3: NH4 ratios than soil extractions, and increasing NO3: NH4 downslope. These results suggest significant export of nitrogen after fire and the potential for nitrification as N is transported across the landscape. These changes in N cycling are likely to have substantial consequences for the recovery of plant communities post-fire and for microbial processes and greenhouse gas fluxes, including N2O, from burned watersheds.

Arctic Sediment Transport from Land to Sea - An Integrated Study of Coastal - Marine Processes and Deposits in Dicksonfjorden, Svalbard

NASA Astrophysics Data System (ADS)

Jensen, M.; Choi, K.; Forwick, M.; Howe, J. A.; Husum, K.; Korsun, S.; Maat, D.; Nam, S. I.

2016-12-01

Valleys and fjords are the key transport and storage systems for sediments and biogeochemical elements from high arctic landscapes to the ocean. Sediment and nutrient fluxes are important for the biochemical cycle in the fjords and eventually in the ocean, and are important input data to earth system models. At present, high latitude systems are underrepresented in such models (Russell, 2014). Dicksonfjorden is a fjord in the larger Isfjorden system, Central Spitsbergen, Svalbard. It has no direct glacial input, in contrast to fjords affected by tidewater glaciers. The sediment supply is very high and the inner fjord receives sediment from a tide-influenced delta. This study is part of a multidisciplinary project aiming at mapping and quantifying sediment types and dispersal patterns in present Arctic valley - fjord systems and is the first comprehensive study of the depositional system in Dicksonfjorden. The first field campaign took place in summer 2016, when detailed mapping of the tidal delta and the sea floor in the inner fjord, coring onshore and offshore and sampling for foraminifera, nutrients and microbial abundances were performed. The surface mapping is based on high-resolution drone images, which will be processed to a high-resolution digital elevation model, and the bathymetry and sediment distribution data from the sea floor has been collected with a Gavia Offshore Surveyor AUV, providing high-resolution bathymetry and backscatter data of the seabed. Core transects from the delta surface will be described and compared to marine cores from the fjord basin retrieved from R/V Helmer Hanssen. Sediment accumulation rates will be assessed from 210Pb and 137Cs radionuclides. Preliminary results on the physical and chemical characteristics of the sedimentation system in inner Dicksonfjorden will be presented and implications for the fjord ecosystem will be discussed. References Russell , J.L., 2014. Control on the Latitudinal distribution of climate processes: Results from Earth System Model simulations. AAPG/SEPM Hedberg Research Conference "Latitudinal controls on stratigraphic models and sedimentary concepts, Banff, Alberta, Canada, September 28 - October 1, 2014, Abstract volume, 10-11.

Selection of solubility parameters for characterization of pharmaceutical excipients.

PubMed

Adamska, Katarzyna; Voelkel, Adam; Héberger, Károly

2007-11-09

The solubility parameter (delta(2)), corrected solubility parameter (delta(T)) and its components (delta(d), delta(p), delta(h)) were determined for series of pharmaceutical excipients by using inverse gas chromatography (IGC). Principal component analysis (PCA) was applied for the selection of the solubility parameters which assure the complete characterization of examined materials. Application of PCA suggests that complete description of examined materials is achieved with four solubility parameters, i.e. delta(2) and Hansen solubility parameters (delta(d), delta(p), delta(h)). Selection of the excipients through PCA of their solubility parameters data can be used for prediction of their behavior in a multi-component system, e.g. for selection of the best materials to form stable pharmaceutical liquid mixtures or stable coating formulation.

Population structure of microbial communities associated with two deep, anaerobic, alkaline aquifers.

PubMed Central

Fry, N K; Fredrickson, J K; Fishbain, S; Wagner, M; Stahl, D A

1997-01-01

Microbial communities of two deep (1,270 and 316 m) alkaline (pH 9.94 and 8.05), anaerobic (Eh, -137 and -27 mV) aquifers were characterized by rRNA-based analyses. Both aquifers, the Grande Ronde (GR) and Priest rapids (PR) formations, are located within the Columbia River Basalt Group in south-central Washington, and sulfidogenesis and methanogenesis characterize the GR and PR formations, respectively. RNA was extracted from microorganisms collected from groundwater by ultrafiltration through hollow-fiber membranes and hybridized to taxon-specific oligonucleotide probes. Of the three domains, Bacteria dominated both communities, making up to 92.0 and 64.4% of the total rRNA from the GR and PR formations, respectively. Eucarya comprised 5.7 and 14.4%, and Archaea comprised 1.8% and 2.5%, respectively. The gram-positive target group was found in both aquifers, 11.7% in GR and 7.6% in PR. Two probes were used to target sulfate- and/or metal-reducing bacteria within the delta subclass of Proteobacteria. The Desulfobacter groups was present (0.3%) only in the high-sulfate groundwater (GR). However, comparable hybridization to a probe selective for the desulfovibrios and some metal-reducing bacteria was found in both aquifers, 2.5 and 2.9% from the GR and PR formations, respectively. Selective PCR amplification and sequencing of the desulfovibrio/metal-reducing group revealed a predominance of desulfovibrios in both systems (17 of 20 clones), suggesting that their environmental distribution is not restricted by sulfate availability. PMID:9097447

Population structure of microbial communities associated with two deep, anaerobic, alkaline aquifers.

PubMed

Fry, N K; Fredrickson, J K; Fishbain, S; Wagner, M; Stahl, D A

1997-04-01

Microbial communities of two deep (1,270 and 316 m) alkaline (pH 9.94 and 8.05), anaerobic (Eh, -137 and -27 mV) aquifers were characterized by rRNA-based analyses. Both aquifers, the Grande Ronde (GR) and Priest rapids (PR) formations, are located within the Columbia River Basalt Group in south-central Washington, and sulfidogenesis and methanogenesis characterize the GR and PR formations, respectively. RNA was extracted from microorganisms collected from groundwater by ultrafiltration through hollow-fiber membranes and hybridized to taxon-specific oligonucleotide probes. Of the three domains, Bacteria dominated both communities, making up to 92.0 and 64.4% of the total rRNA from the GR and PR formations, respectively. Eucarya comprised 5.7 and 14.4%, and Archaea comprised 1.8% and 2.5%, respectively. The gram-positive target group was found in both aquifers, 11.7% in GR and 7.6% in PR. Two probes were used to target sulfate- and/or metal-reducing bacteria within the delta subclass of Proteobacteria. The Desulfobacter groups was present (0.3%) only in the high-sulfate groundwater (GR). However, comparable hybridization to a probe selective for the desulfovibrios and some metal-reducing bacteria was found in both aquifers, 2.5 and 2.9% from the GR and PR formations, respectively. Selective PCR amplification and sequencing of the desulfovibrio/metal-reducing group revealed a predominance of desulfovibrios in both systems (17 of 20 clones), suggesting that their environmental distribution is not restricted by sulfate availability.

Proposal of biostimulation for hexachlorocyclohexane (HCH)-decontamination and characterization of culturable bacterial community from high-dose point HCH-contaminated soils.

PubMed

Dadhwal, M; Singh, A; Prakash, O; Gupta, S K; Kumari, K; Sharma, P; Jit, S; Verma, M; Holliger, C; Lal, R

2009-02-01

To locate a high-dose point hexachlorocyclohexane (HCH)-contaminated site, to identify HCH-degrading bacteria in it and assay HCH-decontamination by biostimulation. Bacteria were isolated by serial dilution method from HCH-contaminated soil samples collected from areas near an HCH-manufacturing unit and its dumpsite in North India. After confirming the presence of indigenous HCH-degraders (seven of 24 strains), an ex situ biostimulation experiment was conducted. For this, residue levels in soil were diluted by mixing with pristine garden soil and aeration, moisture and nutrients were provided intermittently. This soil was monitored for reduction in Sigma-HCH (sum of alpha-, beta-, gamma- and delta-HCH) levels and stimulation of HCH-degraders. Experiments were conducted twice, in March-April (c. 75 microg Sigma-HCH g(-1) soil) and October-November 2006 (c. 280 microg Sigma-HCH g(-1) soil) at 26-30 degrees C. Sigma-HCH levels were reduced to <30% of the original in 24 days and <3% in 240 days in the experimental pits. Terminal restriction fragment length polymorphism analysis reflected changes in microbial community structure during the course of experiment. Our results show presence of HCH-degrading sphingomonads at a high-dose point HCH-contaminated site and presents biostimulation as an effective approach for its decontamination via aeration, addition of nutrients and moisture, of the indigenous population. The study demonstrates that biostimulation of indigenous HCH-degrading microbial population can be used for decontamination of chronically HCH-contaminated sites.

Tides Stabilize Deltas until Humans Interfere

NASA Astrophysics Data System (ADS)

Hoitink, T.; Zheng Bing, W.; Vermeulen, B.; Huismans, Y.; Kastner, K.

2017-12-01

Despite global concerns about river delta degradation caused by extraction of natural resources, sediment retention by reservoirs and sea-level rise, human activity in the world's largest deltas intensifies. In this review, we argue that tides tend to stabilize deltas until humans interfere. Under natural circumstances, delta channels subject to tides are more stable than their fluvial-dominated counterparts. The oscillatory tidal flow counteracts the processes responsible for bank erosion, which explains why unprotected tidal channels migrate only slowly. Peak river discharges attenuate the tides, which creates storage space to accommodate the extra river discharge during extreme events and as a consequence, reduce flood risk. With stronger tides, the river discharge is being distributed more evenly over the various branches in a delta, preventing silting up of smaller channels. Human interference in deltas is massive. Storm surge barriers are constructed, new land is being reclaimed and large-scale sand excavation takes place, to collect building material. Evidence from deltas around the globe shows that in human-controlled deltas the tidal motion often plays a destabilizing role. In channels of the Rhine-Meuse Delta, some 100 scour holes are identified, which relates to the altered tidal motion after completion of a storm surge barrier. Sand mining has led to widespread river bank failures in the tidally-influenced Mekong Delta. The catastrophic flood event in the Gauges-Brahmaputra Delta by Cyclone Aila, which caused the inundation of an embanked polder area for over two years, was preceded by river bank erosion at the mouths of formal tidal channels that were blocked by the embankment. Efforts to predict the developments of degrading deltas are few. Existing delta models are capable of reproducing expanding deltas, which is essentially a matter of simulating the transport of sediment from source in a catchment to the sink in a delta. Processes of soil compaction, mixing of sands and clay, and the influence of peat layers complicate the prediction of delta erosion. Considering sea-level rise, sediment depletion and all the direct human modifications in deltas, there is a need for a new generation delta models using quantified erosion resistance from geological records.

Growth laws for delta crevasses in the Mississippi River Delta: observations and modeling

NASA Astrophysics Data System (ADS)

Yocum, T. A.; Georgiou, I. Y.

2016-02-01

River deltas are accumulations of sedimentary deposits delivered by rivers via a network of distributary channels. Worldwide they are threatened by environmental changes, including subsidence, global sea level rise and a suite of other local factors. In the Mississippi River Delta (MRD) these impacts are exemplified, and have led to proposed solutions to build land that include sediment diversions, thereby reinitiating the delta cycle. While economically efficient, there are too few analogs of small deltas aside from laboratory studies, numerical modeling studies, theoretical approaches, and limited field driven observations. Anthropogenic crevasses in the modern delta are large enough to overcome limitations of laboratory deltas, and small enough to allow for "rapid" channel and wetland development, providing an ideal setting to investigate delta development mechanics. Crevasse metrics were obtained using a combination of geospatial tools, extracting key parameters (bifurcation length and width, channel order and depth) that were non-dimensionalized and compared to river-dominated delta networks previously studied. Analysis showed that most crevasses in the MRD appear to obey delta growth laws and delta allometry relationships, suggesting that crevasses do exhibit similar planform metrics to larger Deltas; the distance to mouth bar versus bifurcation order demonstrated to be a very reasonable first order estimate of delta-top footprint. However, some crevasses exhibited different growth metrics. To better understand the hydrodynamic and geomorphic controls governing crevasse evolution in the MRD, we assess delta dynamics via a suite of field observations and numerical modeling in both well-established and newly constructed crevasses. Our analysis suggests that delta development is affected by the relative influence of external (upstream and downstream) and internal controls on the hydrodynamic and sediment transport patterns in these systems.

Human common acute lymphoblastic leukemia-derived cell lines are competent to recombine their T-cell receptor delta/alpha regions along a hierarchically ordered pathway.

PubMed

Hansen-Hagge, T E; Yokota, S; Reuter, H J; Schwarz, K; Bartram, C R

1992-11-01

Rearrangements of the T-cell receptor (TCR) delta locus are observed in the majority of human B-cell precursor acute lymphoblastic leukemias (ALL) with a striking predominance of V delta 2(D)D delta 3 recombinations in common ALL (cALL) patients. Recently, we and others showed that almost 20% of cALL cases are characterized by further recombination of V delta 2(D)D delta 3 segments to J alpha elements, thereby deleting the TCR delta locus in analogy to the delta Rec/psi J alpha pathway in differentiating alpha/beta-positive T cells. We report here that two human cALL-derived cell lines, REH and Nalm-6, are competent to recombine the TCR delta/alpha locus under standard tissue culture conditions. Analysis of different REH subclones obtained by limiting dilution of the initial culture showed a biased recombination of V delta 2D delta 3 to distinct J alpha elements. During prolonged tissue culture, a subclone acquired growth advantage and displaced parental cells as well as other subclones. Frequently, the DJ junctions of REH subclones contained extended stretches of palindromic sequences derived from modified D delta 3 coding elements. The other cell line, Nalm-6, started the TCR delta/alpha recombination with an unusual signal joint of a cryptic recombinase signal sequence (RSS) upstream of D delta 3 to the 3' RSS of D delta 3. The RSS dimer was subsequently rearranged in all investigated subclones to an identical J alpha element. Both cell lines might become valuable tools to unravel the complex regulation of TCR delta/alpha recombination pathways in malignant and normal lymphopoiesis.

Water and nitrogen conditions affect the relationships of Delta13C and Delta18O to gas exchange and growth in durum wheat.

PubMed

Cabrera-Bosquet, Llorenç; Molero, Gemma; Nogués, Salvador; Araus, José Luis

2009-01-01

Whereas the effects of water and nitrogen (N) on plant Delta(13)C have been reported previously, these factors have scarcely been studied for Delta(18)O. Here the combined effect of different water and N regimes on Delta(13)C, Delta(18)O, gas exchange, water-use efficiency (WUE), and growth of four genotypes of durum wheat [Triticum turgidum L. ssp. durum (Desf.) Husn.] cultured in pots was studied. Water and N supply significantly increased plant growth. However, a reduction in water supply did not lead to a significant decrease in gas exchange parameters, and consequently Delta(13)C was only slightly modified by water input. Conversely, N fertilizer significantly decreased Delta(13)C. On the other hand, water supply decreased Delta(18)O values, whereas N did not affect this parameter. Delta(18)O variation was mainly determined by the amount of transpired water throughout plant growth (T(cum)), whereas Delta(13)C variation was explained in part by a combination of leaf N and stomatal conductance (g(s)). Even though the four genotypes showed significant differences in cumulative transpiration rates and biomass, this was not translated into significant differences in Delta(18)O(s). However, genotypic differences in Delta(13)C were observed. Moreover, approximately 80% of the variation in biomass across growing conditions and genotypes was explained by a combination of both isotopes, with Delta(18)O alone accounting for approximately 50%. This illustrates the usefulness of combining Delta(18)O and Delta(13)C in order to assess differences in plant growth and total transpiration, and also to provide a time-integrated record of the photosynthetic and evaporative performance of the plant during the course of crop growth.

Stable-isotope ratios of hydrogen and oxygen in precipitation at Norman, Oklahoma, 1996-2008

USGS Publications Warehouse

Jaeschke, Jeanne B.; Scholl, Martha A.; Cozzarelli, Isabelle M.; Masoner, Jason R.; Christenson, Scott; Qi, Haiping

2011-01-01

Precipitation samples for measurement of stable-isotope ratios of hydrogen (delta2H) and oxygen (delta18O) were collected at the Norman Landfill Research Site in Norman, Oklahoma, from May 1996 to October 2008. Rainfall amounts also were measured at the site (U.S. Geological Survey gaging station 07229053) during the collection period. The delta2H of precipitation samples ranged from -121.9 to +8.3 per mil, and the delta18O of precipitation ranged from -16.96 to +0.50 per mil. The volume-weighted average values for delta2H and delta18O of precipitation over the 12-year measurement period were -31.13 per mil for delta2H and -5.57 per mil for delta18O. Average summer-season delta2H and delta18O values of precipitation usually were more positive (enriched in the heavier isotopes) than winter values.

`Science to the Glory of God'. The Popular Science Magazine Ibérica and its Coverage of Radioactivity, 1914-1936

NASA Astrophysics Data System (ADS)

Herran, Néstor

2012-03-01

This paper provides a first approach to the history of Ibérica, one of the most important popular science magazines published in Spain before the Civil War. Founded in 1914 by members of the Society of Jesus based at the Ebro Observatory, Ibérica reached a weekly circulation of about 10,000 in the mid 1920s, and was instrumental in extending science education in Jesuit education facilities and in developing a "reactionary modernist" culture that embraced Catholicism and modernisation. By focusing on its coverage of radioactivity and the radium industry, the article aims to examine the magazine's popularising style and ideology, and to determine its role in the debates regarding the cultural value of science in the first decades of twentieth century Spain.

Measuring delta volumetric change and composition using a streakline-based method on the Wax Lake Delta

NASA Astrophysics Data System (ADS)

Hurlbut, K.; Estep, J. D.; Shaw, J.; Edmonds, D. A.

2016-12-01

Estimating river delta growth is essential for determining coastal sustainability. We use a new method to quantify the recent accretion and composition of the Wax Lake Delta, a rapidly prograding delta in Louisiana. The method identifies the area of significant (subaqueous) delta aggradation from delta flow patterns, which are visible in aerial imagery through biogenic streaklines that naturally occur on the water surface. Comparison of bathymetric maps and streaklines shows that channel tips and the associated seaward extent of significant delta deposition occur where the divergence of flow direction equals 0 (+/- 400 m). Delta volumes calculated using this method, the 1974 pre-delta shoreline, and a measured average delta thickness of 1.6 m provide an estimate of the delta volume which we found to increase by 2.0*106 m3/yr between 1992 and 2014. We then compared this rate to the total volume of silt and sand discharged to the WLD using USGS measurements. Over the same period, the WLD received 1.4*106 m3/yr of sand and 9.0*106 m3/yr of silt and clay. Assuming all sand supplied to the delta is sequestered, volume comparisons show that the sand fraction of the WLD is between 18-38%, lower than previous estimates. Further, between 44-69% of the total suspended silt and clay bypasses the delta. These composition estimates can be used to predict land growth from engineered diversions, and the method can be used to monitor the resulting delta growth.

The second Quito astrolabe catalogue

NASA Astrophysics Data System (ADS)

Kolesnik, Y. B.; Davila, H.

1994-03-01

The paper contains 515 individual corrections {DELTA}α and 235 corrections {DELTA}δ to FK5 and FK5Supp. stars and 50 corrections to their proper motions computed from observations made with the classical Danjon astrolabe OPL-13 at Quito Astronomical Observatory of Ecuador National Polytechnical School during a period from 1964 to 1983. These corrections cover the declination zone from -30deg to +30deg. Mean probable errors of catalogue positions are 0.047" in αcosδ and 0.054" in δ. The systematic trends of the catalogue {DELTA}αalpha_cosδ, {DELTA}αdelta_cosδ, {DELTA}δalpha_, {DELTA}δdelta_ are presented for the observed zone.

Martian deltas: Morphology and distribution

NASA Technical Reports Server (NTRS)

Rice, J. W., Jr.; Scott, D. H.

1993-01-01

Recent detailed mapping has revealed numerous examples of Martian deltas. The location and morphology of these deltas are described. Factors that contribute to delta morphology are river regime, coastal processes, structural stability, and climate. The largest delta systems on Mars are located near the mouths of Maja, Maumee, Vedra, Ma'adim, Kasei, and Brazos Valles. There are also several smaller-scale deltas emplaced near channel mouths situated in Ismenius Lacus, Memnonia, and Arabia. Delta morphology was used to reconstruct type, quantity, and sediment load size transported by the debouching channel systems. Methods initially developed for terrestrial systems were used to gain information on the relationships between Martian delta morphology, river regime, and coastal processes.

Evidence for clonal selection of gamma/delta T cells in response to a human pathogen

PubMed Central

1991-01-01

T cells bearing gamma/delta antigen receptors comprise a resident population of intraepithelial lymphocytes in organs such as skin, gut, and lungs, where they are strategically located to contribute to the initial defense against infection. An important unsolved question about antigen-driven gamma/delta T cell responses regards the breadth of their T cell receptor (TCR) repertoire, since many specific epithelial compartments in mice display limited diversity. We have examined the diversity of TCR delta gene expression among human gamma/delta T cells from skin lesions induced by intradermal challenge with Mycobacterium leprae. We show that the vast majority of gamma/delta cells from M. leprae lesions use either V delta 1-J delta 1 or V delta 2-J delta 1 gene rearrangements and, within a given region of the lesion, display limited junctional diversity. This contrasts markedly with the extensive diversity of gamma/delta T cells from peripheral blood of these same individuals, as well as skin from normal donors. These results indicate that the gamma/delta response to M. leprae involves the selection of a limited number of clones from among a diverse repertoire, probably in response to specific mycobacterial and/or host antigens. PMID:1651977

Depositional architecture and evolution of inner shelf to shelf edge delta systems since the Late Oliocene and their respone to the tectonic and sea level change, Pear River Mouth Basin, northern South China Sea

NASA Astrophysics Data System (ADS)

Lin, Changsong; Zhang, Zhongtao; liu, Jingyan; Jiang, Jing

2016-04-01

The Pear River Mouth Basin is located in the northern continent margin of the South China Sea. Since the Late Oligocene, the long-term active fluvial systems (Paleo-Zhujiang) from the western basin margin bebouched into the northern continental margin of the South China Sea and formed widespread deltaic deposits in various depositional geomorphologies and tectonic settings. Based of integral analysys of abundant seismic, well logging and drilling core data, Depositional architecture and evolution of these delta systems and their respone to the tectonic and sea level change are documented in the study. There are two basic types of the delta systems which have been recognized: inner shelf delta deposited in shallow water enviroments and the outer shelf or shelf-edge delta systems occurred in deep water settings. The paleowater depths of these delta systems are around 30 to 80m (inner shelf delta) and 400-1000m (shelf-edge delta) estimated from the thickness (decompaction) of the delta front sequences. The study shows that the inner shelf delta systems are characterized by relatively thin delta forests (20-40m), numereous stacked distributary channel fills, relative coarse river mouth bar deposits and thin distal delta front or distal bar and prodelta deposits. In contrast, the outer shelf or shelf edge delta systems are characteristic of thick (300-800m) and steep (4-60) of deltaic clinoforms, which commonly display in 3D seismic profiles as "S" shape reflection. Large scale soft-sediment deformation structures, slump or debris flow deposits consisting mainly of soft-sediment deformed beds, blocks of sandstones and siltstones or mudstones widely developed in the delta front deposits. The shelf edge delta systems are typically associated with sandy turbidite fan deposits along the prodelta slopes, which may shift basinwards as the progradation of the delta systems. The delta systems underwent several regional cycles of evolution from inner shelf deltas to shelf edge deltas since the Late Oligocene in the study area, and this is consistent with relative sea level changes constrained by interplay of tectonic subsidence or global sea level change and sediment supply. The shelf-edge delta sandy deposits and the associated prodelta turbidite fan systems are the most important oil/gas bearing reservoirs in the continental slope area.

C-terminal cleavage of DeltaNp63alpha is associated with TSA-induced apoptosis in immortalized corneal epithelial cells.

PubMed

Robertson, Danielle M; Ho, Su-Inn; Cavanagh, H Dwight

2010-08-01

In the central human corneal epithelium, loss of DeltaNp63 occurs in all surface epithelial cells preparing to undergo desquamation, suggesting a potential role for DeltaNp63 isoforms in mediating surface cell apoptotic shedding. In this study, the authors investigated a role for DeltaNp63 isoforms in caspase-mediated apoptosis in a telomerase-immortalized corneal epithelial cell line. For in vitro studies, hTCEpi cells were cultured in KGM-2 serum-free culture media containing 0.15 mM calcium. To assess dynamic protein interactions among individual DeltaNp63 isoforms, DeltaNp63-EGFP expression plasmids were transiently expressed in hTCEpi cells and evaluated by FRAP. Trichostatin-A (TSA; 3.31 muM) was used to induce cell death as measured by caspase activity. Cleavage and loss of endogenous DeltaNp63alpha, DeltaNp63-EGFP expression plasmids, and p53 were assessed after treatment with TSA and siRNA. Transient expression of DeltaNp63-EGFP alpha and beta isoforms resulted in the formation of a smaller isoform similar in size to DeltaNp63gamma-EGFP. FRAP demonstrated that DeltaNp63alpha-EGFP has greater immobile fraction than beta or gamma. TSA induced caspase-mediated apoptotic pathways; caspase induction was accompanied by a decrease in endogenous DeltaNp63alpha and p53. TSA upregulated DeltaNp63-EGFP plasmid expression; this was accompanied by a selective increase in cleavage of DeltaNp63alpha-EGFP. siRNA knockdown of DeltaNp63alpha correlated with a reduction in p53 independently of TSA. DeltaNp63alpha is the dominant active isoform in corneal epithelial cell nuclei. Loss of DeltaNp63alpha occurs during apoptotic signaling by cleavage at the C terminus. The corresponding loss of p53 suggests that a significant relationship appears to exist between these two regulatory proteins.

Watershed-Scale Modeling of Land-Use and Altered Environment Impacts on Aquatic Weed Growth in the Delta

NASA Technical Reports Server (NTRS)

Bubenheim, David; Potter, Christopher; Zhang, Minghua

2016-01-01

The California Sacramento-San Joaquin River Delta is the hub for California's water supply, conveying water from Northern to Southern California agriculture and communities while supporting important ecosystem services, agriculture, and communities in the Delta. Changes in climate, long-term drought, and water quality have all been suspected as playing role in the dramatic expansion of invasive aquatic plants and their impact on ecosystems of the San Francisco Bay / California Delta complex. NASA Ames Research Center, USDA-Agricultural Research Service, the State of California, UC Davis, and local governments have partnered under a USDA sponsored project (DRAAWP) to develop science-based, adaptive-management strategies for invasive aquatic plants in Sacramento-San Joaquin Delta. Critical to developing management strategies is to understand how the Delta is affected by both the magnitude of fluctuations in land-use and climate / drought induced altered environments and how the plants respond to these altered environments. We utilize the Soil Water Assessment Tool (SWAT), a watershed-scale model developed to quantify the impact of land management practices in large and complex watersheds on water quality, as the backbone for a customized Delta model - Delta-SWAT. The model uses land-use, soils, elevation, and hydrologic routing to characterize pesticide and nutrient transport from the Sacramento and San Joaquin rivers watersheds and loading into the Delta. Land-use within the Delta, as well as water extraction to supply those functions, and the resulting return of water to Delta waterways are included in Delta-SWAT. Hydrologic transport within the Delta has required significant attention to address the lack of elevation driven transport processes. Delta-SWAT water quality trend estimates are compared with water quality monitoring conducted throughout the Delta. Aquatic plant response to water quality and other environmental factors is carried out using a customized model component. Plant response to the range of water quality factors, response times, and altered temperature and light regimes of the Delta have required gap-filling studies to provide model parameters. Delta-SWAT provides a tool for evaluating temporal and spatial effects of land-use and altered environments in the Delta and contributing watersheds on aquatic weed growth. Using Delta-SWAT for simulation modeling allows evaluation of historic and current conditions as well as consideration potential climate change and management practice outcomes. Delta-SWAT adds to the scientific understanding of dynamics in the Delta and enhances development of science-informed, management strategies and practices.

Adrenal steroids in post-menopausal women: relation to obesity and to bone mineral content.

PubMed

Brody, S; Carlström, K; Lagrelius, A; Lunell, N O; Möllerström, G

1987-04-01

Basal levels and ACTH-induced increments of serum 17 alpha-hydroxyprogesterone (170HP), cortisol, 4-androstene-3,17-dione (A-4), dehydroepiandrosterone (DHA), and dehydroepiandrosterone sulphate (DHAS) were related to the degree of obesity and to trabecular bone mineral density in 29 postmenopausal women. The ACTH-induced increment of 170HP (delta 170HP) was negatively correlated to basal DHA and delta DHA. Positive correlations were found between obesity, expressed as Broca's index, and delta DHA and the delta DHA/delta 170HP ratio. Bone mineral density was positively correlated to basal DHAS, delta DHA, delta DHAS and the delta DHA/delta 170HP ratio, and negatively correlated to delta 170HP. DHA and 170HP represent a crossroad in adrenocortical steroid biosynthesis, leading to delta 5-androgens and glucocorticoids as main products. Besides age, obesity may also influence the intra-adrenal distribution between these two main steroidogenic pathways. The results suggest that differences at a very early stage of the adrenal steroidogenesis may influence calcium homeostasis in the post-menopausal woman.

The Concentration Dependence of the (Delta)s Term in the Gibbs Free Energy Function: Application to Reversible Reactions in Biochemistry

ERIC Educational Resources Information Center

Gary, Ronald K.

2004-01-01

The concentration dependence of (delta)S term in the Gibbs free energy function is described in relation to its application to reversible reactions in biochemistry. An intuitive and non-mathematical argument for the concentration dependence of the (delta)S term in the Gibbs free energy equation is derived and the applicability of the equation to…

78 FR 21491 - DeltaPoint Capital IV, L.P., DeltaPoint Capital IV (New York), L.P.; Notice Seeking Exemption...

Federal Register 2010, 2011, 2012, 2013, 2014

2013-04-10

... SMALL BUSINESS ADMINISTRATION [License No. 02/02-0662, 02/02-0661] DeltaPoint Capital IV, L.P., DeltaPoint Capital IV (New York), L.P.; Notice Seeking Exemption Under Section 312 of the Small Business Investment Act, Conflicts of Interest Notice is hereby given that DeltaPoint Capital IV, L.P. and DeltaPoint...

Sediment transport dynamics linked to morphological evolution of the Selenga River delta, Lake Baikal, Russia

NASA Astrophysics Data System (ADS)

Dong, T. Y.; Nittrouer, J.; McElroy, B. J.; Czapiga, M. J.; Il'icheva, E.; Pavolv, M.; Parker, G.

2014-12-01

The Selenga River delta, Lake Baikal, Russia, is approximately 700 km2 in size and contains three active lobes that receive varying amounts of water and sediment discharge. This delta represents a unique end-member in so far that the system is positioned along the deep-water (~1500 m) margin of Lake Baikal and therefore exists as a shelf-edge delta. In order to evaluate the morphological dynamics of the Selenga delta, field expeditions were undertaken during July 2013 and 2014, to investigate the morphologic, sedimentologic, and hydraulic nature of this delta system. Single-beam bathymetry data, sidescan sonar data, sediment samples, and aerial survey data were collected and analyzed to constrain: 1) channel geometries within the delta, 2) bedform sizes and spatial distributions, 3) grain size composition of channel bed sediment as well as bank sediment, collected from both major and minor distributary channels, and 4) elevation range of the subaerial portion of the delta. Our data indicate that the delta possesses downstream sediment fining, ranging from predominantly gravel and sand near the delta apex to silt and sand at the delta-lake interface. Field surveys also indicate that the Selenga delta has both eroding and aggrading banks, and that the delta is actively incising into some banks that consist of terraces, which are defined as regions that are not inundated by typical 2- to 4-year flood discharge events. Therefore the terraces are distinct from the actively accreting regions of the delta that receive sedimentation via water inundation during regular river floods. We spatially constrain the regions of the Selenga delta that are inundated during floods versus terraced using a 1-D water-surface hydrodynamic model that produces estimates of stage for flood water discharges, whereby local water surface elevations produced with the model are compared to the measured terrestrial elevations. Our analyses show that terrace elevations steadily decrease downstream for all lobes, and that the delta is undergoing an active phase of erosion, characterized by channel incision and extensive lateral erosion of terraces; this process of delta 'self-cannibalization' contributes to the downstream sediment flux and morphological evolution of the delta.

Decoupling Shoreline Behavior Over Variable Time and Space Scales

NASA Astrophysics Data System (ADS)

Hapke, C. J.; Plant, N. G.; Henderson, R.; Schwab, W. C.; Nelson, T. R.

2016-12-01

Despite global concerns about river delta degradation caused by extraction of natural resources, sediment retention by reservoirs and sea-level rise, human activity in the world's largest deltas intensifies. In this review, we argue that tides tend to stabilize deltas until humans interfere. Under natural circumstances, delta channels subject to tides are more stable than their fluvial-dominated counterparts. The oscillatory tidal flow counteracts the processes responsible for bank erosion, which explains why unprotected tidal channels migrate only slowly. Peak river discharges attenuate the tides, which creates storage space to accommodate the extra river discharge during extreme events and as a consequence, reduce flood risk. With stronger tides, the river discharge is being distributed more evenly over the various branches in a delta, preventing silting up of smaller channels. Human interference in deltas is massive. Storm surge barriers are constructed, new land is being reclaimed and large-scale sand excavation takes place, to collect building material. Evidence from deltas around the globe shows that in human-controlled deltas the tidal motion often plays a destabilizing role. In channels of the Rhine-Meuse Delta, some 100 scour holes are identified, which relates to the altered tidal motion after completion of a storm surge barrier. Sand mining has led to widespread river bank failures in the tidally-influenced Mekong Delta. The catastrophic flood event in the Gauges-Brahmaputra Delta by Cyclone Aila, which caused the inundation of an embanked polder area for over two years, was preceded by river bank erosion at the mouths of formal tidal channels that were blocked by the embankment. Efforts to predict the developments of degrading deltas are few. Existing delta models are capable of reproducing expanding deltas, which is essentially a matter of simulating the transport of sediment from source in a catchment to the sink in a delta. Processes of soil compaction, mixing of sands and clay, and the influence of peat layers complicate the prediction of delta erosion. Considering sea-level rise, sediment depletion and all the direct human modifications in deltas, there is a need for a new generation delta models using quantified erosion resistance from geological records.

The diversity of (13)C isotope discrimination in a Quercus robur full-sib family is associated with differences in intrinsic water use efficiency, transpiration efficiency, and stomatal conductance.

PubMed

Roussel, Magali; Dreyer, Erwin; Montpied, Pierre; Le-Provost, Grégoire; Guehl, Jean-Marc; Brendel, Oliver

2009-01-01

(13)C discrimination in organic matter with respect to atmospheric CO(2) (Delta(13)C) is under tight genetic control in many plant species, including the pedunculate oak (Quercus robur L.) full-sib progeny used in this study. Delta(13)C is expected to reflect intrinsic water use efficiency, but this assumption requires confirmation due to potential interferences with mesophyll conductance to CO(2), or post-photosynthetic discrimination. In order to dissect the observed Delta(13)C variability in this progeny, six genotypes that have previously been found to display extreme phenotypic values of Delta(13)C [either very high ('high Delta') or low ('low Delta') phenotype] were selected, and transpiration efficiency (TE; accumulated biomass/transpired water), net CO(2) assimilation rate (A), stomatal conductance for water vapour (g(s)), and intrinsic water use efficiency (W(i)=A/g(s)) were compared with Delta(13)C in bulk leaf matter, wood, and cellulose in wood. As expected, 'high Delta' displayed higher values of Delta(13)C not only in bulk leaf matter, but also in wood and cellulose. This confirmed the stability of the genotypic differences in Delta(13)C recorded earlier. 'High Delta' also displayed lower TE, lower W(i), and higher g(s). A small difference was detected in photosynthetic capacity but none in mesophyll conductance to CO(2). 'High Delta' and 'low Delta' displayed very similar leaf anatomy, except for higher stomatal density in 'high Delta'. Finally, diurnal courses of leaf gas exchange revealed a higher g(s) in 'high Delta' in the morning than in the afternoon when the difference decreased. The gene ERECTA, involved in the control of water use efficiency, leaf differentiation, and stomatal density, displayed higher expression levels in 'low Delta'. In this progeny, the variability of Delta(13)C correlated closely with that of W(i) and TE. Genetic differences of Delta(13)C and W(i) can be ascribed to differences in stomatal conductance and stomatal density but not in photosynthetic capacity.

Paleolimnological investigations of anthropogenic environmental change in Lake Tanganyika: I. An introduction to the project

USGS Publications Warehouse

Cohen, A.S.; Palacios-Fest, M. R.; McGill, J.; Swarzenski, P.W.; Verschuren, D.; Sinyinza, R.; Songori, T.; Kakagozo, B.; Syampila, M.; O'Reilly, C. M.; Alin, S.R.

2005-01-01

We investigated paleolimnological records from a series of river deltas around the northeastern rim of Lake Tanganyika, East Africa (Tanzania and Burundi) in order to understand the history of anthropogenic activity in the lake's catchment over the last several centuries, and to determine the impact of these activities on the biodiversity of littoral and sublittoral lake communities. Sediment pollution caused by increased rates of soil erosion in deforested watersheds has caused significant changes in aquatic communities along much of the lake's shoreline. We analyzed the effects of sediment discharge on biodiversity around six deltas or delta complexes on the east coast of Lake Tanganyika: the Lubulungu River delta, Kabesi River delta, Nyasanga/Kahama River deltas, and Mwamgongo River delta in Tanzania; and the Nyamuseni River delta and Karonge/Kirasa River deltas in Burundi. Collectively, these deltas and their associated rivers were chosen to represent a spectrum of drainage-basin sizes and disturbance levels. By comparing deltas that are similar in watershed attributes (other than disturbance levels), our goal was to explore a series of historical "experiments" at the watershed scale, with which we could more clearly evaluate hypotheses of land use or other effects on nearshore ecosystems. Here we discuss these deltas, their geologic and physiographic characteristics, and the field procedures used for coring and sampling the deltas, and various indicators of anthropogenic impact. ?? Springer 2005.

Delta Vision, Delta Voices: The Mississippi Delta Beyond 2000

DOT National Transportation Integrated Search

2000-05-10

This Report has taken its guidance from a single overriding goal: To recognize the enormous natural, capital, and cultural resources of the Delta, and to enable all of the Delta's citizens to participate as full and successful partners in America's s...

Characterization of Microbial Communities Associated With Deep-Sea Hydrothermal Vent Animals of the East Pacific Rise and the Galápagos Rift

NASA Astrophysics Data System (ADS)

Ward, N.; Page, S.; Heidelberg, J.; Eisen, J. A.; Fraser, C. M.

2002-12-01

The composition of microbial communities associated with deep-sea hydrothermal vent animals is of interest because of the key role of bacterial symbionts in driving the chemosynthetic food chain of the vent system, and also because bacterial biofilms attached to animal exterior surfaces may play a part in settlement of larval forms. Sequence analysis of 16S ribosomal RNA (rRNA) genes from such communities provides a snapshot of community structure, as this gene is present in all Bacteria and Archaea, and a useful phylogenetic marker for both cultivated microbial species, and uncultivated species such as many of those found in the deep-sea environment. Specimens of giant tube worms (Riftia pachyptila), mussels (Bathymodiolus thermophilus), and clams (Calyptogena magnifica) were collected during the 2002 R/V Atlantis research cruises to the East Pacific Rise (9N) and Galápagos Rift. Microbial biofilms attached to the exterior surfaces of individual animals were sampled, as were tissues known to harbor chemosynthetic bacterial endosymbionts. Genomic DNA was extracted from the samples using a commercially available kit, and 16S rRNA genes amplified from the mixed bacterial communities using the polymerase chain reaction (PCR) and oligonucleotide primers targeting conserved terminal regions of the 16S rRNA gene. The PCR products obtained were cloned into a plasmid vector and the recombinant plasmids transformed into cells of Escherichia coli. Individual cloned 16S rRNA genes were sequenced at the 5' end of the gene (the most phylogenetically informative region in most taxa) and the sequence data compared to publicly available gene sequence databases, to allow a preliminary assignment of clones to taxonomic groups within the Bacteria and Archaea, and to determine the overall composition and phylogenetic diversity of the animal-associated microbial communities. Analysis of Riftia pachyptila exterior biofilm samples revealed the presence of members of the delta and epsilon proteobacteria, low GC Gram positive bacteria (firmicutes), spirochetes, CFB (Cytophaga-Flavobacterium-Bacteroides) group, green nonsulfur bacteria, acidobacteria, verrucomicrobia, and planctomycetes. The presence of the latter three taxonomic groups is of special interest, as they represent phylogenetically distinct groups within the Bacteria for which specific ecological functions have not yet been identified, but which have been found to be widely distributed and often numerically significant in diverse terrestrial and aquatic habitats. Although further sequencing is required to demonstrate the presence of a Riftia-associated microbial population distinct from that of the surrounding seawater, results available from three Riftia individuals from the East Pacific Rise suggest this to be the case. Analysis of microbial communities associated with the gill tissue of the mussel Bathymodiolus thermophilus shows a population dominated by gamma-Proteobacterial chemoautotrophic symbionts, although lower frequency novel phylotypes have been detected. Representatives of specific taxonomic groups have been selected for sequencing of the complete 16S rRNA gene, and the sequences used to reconstruct phylogenetic trees to more accurately determine the evolutionary relationships between the novel sequences, and available sequences for both cultured and non-cultured bacteria.

Approaches to defining deltaic sustainability in the 21st century

NASA Astrophysics Data System (ADS)

Day, John W.; Agboola, Julius; Chen, Zhongyuan; D'Elia, Christopher; Forbes, Donald L.; Giosan, Liviu; Kemp, Paul; Kuenzer, Claudia; Lane, Robert R.; Ramachandran, Ramesh; Syvitski, James; Yañez-Arancibia, Alejandro

2016-12-01

Deltas are among the most productive and economically important of global ecosystems but unfortunately they are also among the most threatened by human activities. Here we discuss deltas and human impact, several approaches to defining deltaic sustainability and present a ranking of sustainability. Delta sustainability must be considered within the context of global biophysical and socioeconomic constraints that include thermodynamic limitations, scale and embeddedness, and constraints at the level of the biosphere/geosphere. The development, functioning, and sustainability of deltas are the result of external and internal inputs of energy and materials, such as sediments and nutrients, that include delta lobe development, channel switching, crevasse formation, river floods, storms and associated waves and storm surges, and tides and other ocean currents. Modern deltas developed over the past several thousand years with relatively stable global mean sea level, predictable material inputs from drainage basins and the sea, and as extremely open systems. Human activity has changed these conditions to make deltas less sustainable, in that they are unable to persist through time structurally or functionally. Deltaic sustainability can be considered from geomorphic, ecological, and economic perspectives, with functional processes at these three levels being highly interactive. Changes in this functioning can lead to either enhanced or diminished sustainability, but most changes have been detrimental. There is a growing understanding that the trajectories of global environmental change and cost of energy will make achieving delta sustainability more challenging and limit options for management. Several delta types are identified in terms of sustainability including those in arid regions, those with high and low energy-intensive management systems, deltas below sea level, tropical deltas, and Arctic deltas. Representative deltas are ranked on a sustainability range. Success in sustainable delta management will depend on utilizing natural delta functioning and an ecological engineering approach.

Migration in Deltas: An Integrated Analysis

NASA Astrophysics Data System (ADS)

Nicholls, Robert J.; Hutton, Craig W.; Lazar, Attila; Adger, W. Neil; Allan, Andrew; Arto, Inaki; Vincent, Katharine; Rahman, Munsur; Salehin, Mashfiqus; Sugata, Hazra; Ghosh, Tuhin; Codjoe, Sam; Appeaning-Addo, Kwasi

2017-04-01

Deltas and low-lying coastal regions have long been perceived as vulnerable to global sea-level rise, with the potential for mass displacement of exposed populations. The assumption of mass displacement of populations in deltas requires a comprehensive reassessment in the light of present and future migration in deltas, including the potential role of adaptation to influence these decisions. At present, deltas are subject to multiple drivers of environmental change and often have high population densities as they are accessible and productive ecosystems. Climate change, catchment management, subsidence and land cover change drive environmental change across all deltas. Populations in deltas are also highly mobile, with significant urbanization trends and the growth of large cities and mega-cities within or adjacent to deltas across Asia and Africa. Such migration is driven primarily by economic opportunity, yet environmental change in general, and climate change in particular, are likely to play an increasing direct and indirect role in future migration trends. The policy challenges centre on the role of migration within regional adaptation strategies to climate change; the protection of vulnerable populations; and the future of urban settlements within deltas. This paper reviews current knowledge on migration and adaptation to environmental change to discern specific issues pertinent to delta regions. It develops a new integrated methodology to assess present and future migration in deltas using the Volta delta in Ghana, Mahanadi delta in India and Ganges-Brahmaputra-Meghna delta across India and Bangladesh. The integrated method focuses on: biophysical changes and spatial distribution of vulnerability; demographic changes and migration decision-making using multiple methods and data; macro-economic trends and scenarios in the deltas; and the policies and governance structures that constrain and enable adaptation. The analysis is facilitated by a range of consistent scenarios from global to delta scales, developed in consultation with major stakeholders. Initial results suggest that migration decision-making strongly interacts with diverse measures for adaptation of land, water and agricultural management. A key normative challenge is to identify the parameters of successful migration and adaptation across delta regions, to inform policy analysis and formulation. Key words: Deltas, sea-level rise, migration and adaptation Acknowledgement: DECCMA (Deltas, Vulnerability & Climate Change: Migration & Adaptation) project is part of the Collaborative ADAPTATION Research Initiative in Africa and Asia (CARIAA), with financial support from the UK Government's Department for International Development (DFID) and the International Development Research Centre (IDRC), Canada.

Micro-CT evaluation of apical delta morphologies in human teeth.

PubMed

Gao, Xianhua; Tay, Franklin R; Gutmann, James L; Fan, Wei; Xu, Ting; Fan, Bing

2016-11-07

The apical delta is an intricate system within the root canal and incompletely debridement may affect the long-term prognosis of root canal therapy. The aim of the present study is to investigate the morphologic features of apical deltas in human teeth with micro-computed tomography (micro-CT) using a centreline-fitting algorithm. One hundred and thirty-six apical deltas were detected in 1400 teeth. Molars had more apical deltas (15.8%) than anterior teeth (6.3%). In maxillary molars, the mesiobuccal root had a significantly higher prevalence of apical delta than the palatal root or the distobuccal root. The median vertical distance of the apical delta was 1.87 mm with 13% more than 3 mm. The median diameter and length of the apical delta branches were 132.3 and 934.5 μm. Apical delta branches were not straight with cross-sectional shapes being non-circular. These morphological features of apical delta may complicate debridement of the infected root canal system.

Anaerobic biosynthesis of unsaturated fatty acids in the cyanobacterium, Oscillatoria limnetica

NASA Technical Reports Server (NTRS)

Jahnke, L. L.; Lee, B.; Sweeney, M. J.; Klein, H. P.

1989-01-01

The mechanism for synthesis of monounsaturated fatty acids under aerobic and anaerobic conditions was studied in the facultative anaerobic cyanobacterium, Oscillatoria limnetica. The hexadecenoic acid (C16:1) of aerobically grown O. limnetica was shown to contain both the delta 7 (79%) and delta 9 (21%) isomers, while the octadecenoic (C18:1) acid was entirely the delta 9 acid. Incorporation of [2-14C] acetate into the fatty acids under aerobic conditions resulted in synthesis of the delta 7 and delta 9 C16:1 and the delta 9 C18:1. Synthesis of unsaturated fatty acids in the presence of DCMU required sulfide. Anaerobic incubations in the presence of DCMU and sulfide (less than 0.003% atmospheric oxygen) resulted in a two-fold increase in monounsaturated fatty acids of both delta 7 and delta 9 C16:1 and delta 9 and delta 11 C18:1. The synthesis of these is characteristic of a bacterial-type, anaerobic pathway.

Modified method for estimating petroleum source-rock potential using wireline logs, with application to the Kingak Shale, Alaska North Slope

USGS Publications Warehouse

Rouse, William A.; Houseknecht, David W.

2016-02-11

In 2012, the U.S. Geological Survey completed an assessment of undiscovered, technically recoverable oil and gas resources in three source rocks of the Alaska North Slope, including the lower part of the Jurassic to Lower Cretaceous Kingak Shale. In order to identify organic shale potential in the absence of a robust geochemical dataset from the lower Kingak Shale, we introduce two quantitative parameters, $\\Delta DT_\\bar{x}$ and $\\Delta DT_z$, estimated from wireline logs from exploration wells and based in part on the commonly used delta-log resistivity ($\\Delta \\text{ }log\\text{ }R$) technique. Calculation of $\\Delta DT_\\bar{x}$ and $\\Delta DT_z$ is intended to produce objective parameters that may be proportional to the quality and volume, respectively, of potential source rocks penetrated by a well and can be used as mapping parameters to convey the spatial distribution of source-rock potential. Both the $\\Delta DT_\\bar{x}$ and $\\Delta DT_z$ mapping parameters show increased source-rock potential from north to south across the North Slope, with the largest values at the toe of clinoforms in the lower Kingak Shale. Because thermal maturity is not considered in the calculation of $\\Delta DT_\\bar{x}$ or $\\Delta DT_z$, total organic carbon values for individual wells cannot be calculated on the basis of $\\Delta DT_\\bar{x}$ or $\\Delta DT_z$ alone. Therefore, the $\\Delta DT_\\bar{x}$ and $\\Delta DT_z$ mapping parameters should be viewed as first-step reconnaissance tools for identifying source-rock potential.

Sedimentation and lithofacies relations in the Holocene Pahang Delta Complex, East Coast Malay Peninsula, Malaysia

DOE Office of Scientific and Technical Information (OSTI.GOV)

Farshori, M.Z.; Jantan, A.

1994-07-01

A detailed study of the Pahang River Delta was undertaken in order to understand the development, architecture, geometrical characteristics, and structural sequential organization of the sand bodies on the east coast of the Malay Peninsula. The present delta indicates that although marine wave regimes are dominant, as exhibited by the cuspate-shaped delta, fluvial and tidal influences are substantial, as evident from the bedforms and sand bars morphology. The Pahang Delta system provides a unique case study for a tropical fluvio-marine windwave-dominated delta, which was profoundly influenced by seasonal storms. The deltaic sand is coarse and moderately sorted, and contains abundantmore » clay clasts. The southern coastline of the Pahang Delta is continuously modified by the erosive attack of the storm waves. The delta is subjected to extremely high-energy storm waves and fluvially formed sand bodies, such as channel mouth bars, dominant in other types of deltas that have been replaced by strand plains, sand bars and sand flats. The combination of high wave energy and strong littoral drift along the east coast of the Malay Peninsula results in changing the orientation of the sand bodies in the Pahang Delta. No modern wind-dominated delta is comparable to the Pahang Delta system. However, some modern deltas show many similarities in general morphology and sand distribution. The authors have developed a comprehensive sedimentological model of fluvio-marine sand-body variability in tropical wind-dominated deltas. The results of the studies will enlarge the applicability of geometrical studies to subsurface exploration of hydrocarbons.« less

Stimulation of accumbal GABAA receptors inhibits delta2-, but not delta1-, opioid receptor-mediated dopamine efflux in the nucleus accumbens of freely moving rats.

PubMed

Aono, Yuri; Kiguchi, Yuri; Watanabe, Yuriko; Waddington, John L; Saigusa, Tadashi

2017-11-15

The nucleus accumbens contains delta-opioid receptors that may reduce inhibitory neurotransmission. Reduction in GABA A receptor-mediated inhibition of accumbal dopamine release due to delta-opioid receptor activation should be suppressed by stimulating accumbal GABA A receptors. As delta-opioid receptors are divided into delta2- and delta1-opioid receptors, we analysed the effects of the GABA A receptor agonist muscimol on delta2- and delta1-opioid receptor-mediated accumbal dopamine efflux in freely moving rats using in vivo microdialysis. Drugs were administered intracerebrally through the dialysis probe. Doses of compounds indicate total amount administered (mol) during 25-50min infusions. The delta2-opioid receptor agonist deltorphin II (25.0nmol)- and delta1-opioid receptor agonist DPDPE (5.0nmol)-induced increases in dopamine efflux were inhibited by the delta2-opioid receptor antagonist naltriben (1.5nmol) and the delta1-opioid receptor antagonist BNTX (150.0pmol), respectively. Muscimol (250.0pmol) inhibited deltorphin II (25.0nmol)-induced dopamine efflux. The GABA A receptor antagonist bicuculline (50.0pmol), which failed to affect deltorphin II (25.0nmol)-induced dopamine efflux, counteracted the inhibitory effect of muscimol on deltorphin II-induced dopamine efflux. Neither muscimol (250.0pmol) nor bicuculline (50.0 and 500.0pmol) altered DPDPE (5.0nmol)-induced dopamine efflux. The present results show that reduction in accumbal GABA A receptor-mediated inhibition of dopaminergic activity is necessary to produce delta2-opioid receptor-induced increase in accumbal dopamine efflux. This study indicates that activation of delta2- but not delta1-opioid receptors on the cell bodies and/or terminals of accumbal GABAergic interneurons inhibits GABA release and, accordingly, decreases GABA A receptor-mediated inhibition of dopaminergic terminals, resulting in enhanced accumbal dopamine efflux. Copyright © 2017 Elsevier B.V. All rights reserved.

HER2 isoforms co-expression differently tunes mammary tumor phenotypes affecting onset, vasculature and therapeutic response

PubMed Central

Balboni, Tania; Ianzano, Marianna L.; Laranga, Roberta; Landuzzi, Lorena; Giusti, Veronica; Ceccarelli, Claudio; Santini, Donatella; Taffurelli, Mario; Di Oto, Enrico; Asioli, Sofia; Amici, Augusto; Pupa, Serenella M.; De Giovanni, Carla; Tagliabue, Elda; Iezzi, Manuela; Nanni, Patrizia; Lollini, Pier-Luigi

2017-01-01

Full-length HER2 oncoprotein and splice variant Delta16 are co-expressed in human breast cancer. We studied their interaction in hybrid transgenic mice bearing human full-length HER2 and Delta16 (F1 HER2/Delta16) in comparison to parental HER2 and Delta16 transgenic mice. Mammary carcinomas onset was faster in F1 HER2/Delta16 and Delta16 than in HER2 mice, however tumor growth was slower, and metastatic spread was comparable in all transgenic mice. Full-length HER2 tumors contained few large vessels or vascular lacunae, whereas Delta16 tumors presented a more regular vascularization with numerous endothelium-lined small vessels. Delta16-expressing tumors showed a higher accumulation of i.v. injected doxorubicin than tumors expressing full-length HER2. F1 HER2/Delta16 tumors with high full-length HER2 expression made few large vessels, whereas tumors with low full-length HER2 and high Delta16 contained numerous small vessels and expressed higher levels of VEGF and VEGFR2. Trastuzumab strongly inhibited tumor onset in F1 HER2/Delta16 and Delta16 mice, but not in full-length HER2 mice. Addiction of F1 tumors to Delta16 was also shown by long-term stability of Delta16 levels during serial transplants, in contrast full-length HER2 levels underwent wide fluctuations. In conclusion, full-length HER2 leads to a faster tumor growth and to an irregular vascularization, whereas Delta16 leads to a faster tumor onset, with more regular vessels, which in turn could better transport cytotoxic drugs within the tumor, and to a higher sensitivity to targeted therapeutic agents. F1 HER2/Delta16 mice are a new immunocompetent mouse model, complementary to patient-derived xenografts, for studies of mammary carcinoma onset, prevention and therapy. PMID:28903354

Prediction of protein mutant stability using classification and regression tool.

PubMed

Huang, Liang-Tsung; Saraboji, K; Ho, Shinn-Ying; Hwang, Shiow-Fen; Ponnuswamy, M N; Gromiha, M Michael

2007-02-01

Prediction of protein stability upon amino acid substitutions is an important problem in molecular biology and the solving of which would help for designing stable mutants. In this work, we have analyzed the stability of protein mutants using two different datasets of 1396 and 2204 mutants obtained from ProTherm database, respectively for free energy change due to thermal (DeltaDeltaG) and denaturant denaturations (DeltaDeltaG(H(2)O)). We have used a set of 48 physical, chemical energetic and conformational properties of amino acid residues and computed the difference of amino acid properties for each mutant in both sets of data. These differences in amino acid properties have been related to protein stability (DeltaDeltaG and DeltaDeltaG(H(2)O)) and are used to train with classification and regression tool for predicting the stability of protein mutants. Further, we have tested the method with 4 fold, 5 fold and 10 fold cross validation procedures. We found that the physical properties, shape and flexibility are important determinants of protein stability. The classification of mutants based on secondary structure (helix, strand, turn and coil) and solvent accessibility (buried, partially buried, partially exposed and exposed) distinguished the stabilizing/destabilizing mutants at an average accuracy of 81% and 80%, respectively for DeltaDeltaG and DeltaDeltaG(H(2)O). The correlation between the experimental and predicted stability change is 0.61 for DeltaDeltaG and 0.44 for DeltaDeltaG(H(2)O). Further, the free energy change due to the replacement of amino acid residue has been predicted within an average error of 1.08 kcal/mol and 1.37 kcal/mol for thermal and chemical denaturation, respectively. The relative importance of secondary structure and solvent accessibility, and the influence of the dataset on prediction of protein mutant stability have been discussed.

Chase the direct impact of rainfall into groundwater in Mt. Fuji from multiple analyses including microbial DNA

NASA Astrophysics Data System (ADS)

Kato, Kenji; Sugiyama, Ayumi; Nagaosa, Kazuyo; Tsujimura, Maki

2016-04-01

A huge amount of groundwater is stored in subsurface environment of Mt. Fuji, the largest volcanic mountain in Japan. Based on the concept of piston flow transport of groundwater an apparent residence time was estimated to ca. 30 years by 36Cl/Cl ratio (Tosaki et al., 2011). However, this number represents an averaged value of the residence time of groundwater which had been mixed before it flushes out. We chased signatures of direct impact of rainfall into groundwater to elucidate the routes of groundwater, employing three different tracers; stable isotopic analysis (delta 18O), chemical analysis (concentration of silica) and microbial DNA analysis. Though chemical analysis of groundwater shows an averaged value of the examined water which was blended by various water with different sources and routes in subsurface environment, microbial DNA analysis may suggest the place where they originated, which may give information of the source and transport routes of the water examined. Throughout the in situ observation of four rainfall events showed that stable oxygen isotopic ratio of spring water and shallow groundwater obtained from 726m a.s.l. where the average recharge height of rainfall was between 1500 and 1800 m became higher than the values before a torrential rainfall, and the concentration of silica decreased after this event when rainfall exceeded 300 mm in precipitation of an event. In addition, the density of Prokaryotes in spring water apparently increased. Those changes did not appear when rainfall did not exceed 100 mm per event. Thus, findings shown above indicated a direct impact of rainfall into shallow groundwater, which appeared within a few weeks of torrential rainfall in the studied geological setting. In addition, increase in the density of Archaea observed at deep groundwater after the torrential rainfall suggested an enlargement of the strength of piston flow transport through the penetration of rainfall into deep groundwater. This finding was supported by difference in constituents of Archaea by predominance of Halobacteriales and Methanobacteriales, which were thought to be relatively tightly embedded in geological layer and were extracted from the environment to the examined groundwater. Microbial DNA thus could give information about the route of groundwater, which was never elucidated by analysis of chemical materials dissolved in groundwater.

Role of Dissolved Organic Matter and Geochemical Controls on Arsenic Cycling from Sediments to Groundwater along the Meghna River, Bangladesh: Tracking possible links to permeable natural reactive barrier

NASA Astrophysics Data System (ADS)

Datta, S.; Berube, M.; Knappett, P.; Kulkarni, H. V.; Vega, M.; Jewell, K.; Myers, K.

2017-12-01

Elevated levels of dissolved arsenic (As), iron (Fe) and manganese (Mn) are seen in the shallow groundwaters of southeast Bangladesh on the Ganges Brahmaputra Meghna River delta. This study takes a multi disciplinary approach to understand the extent of the natural reactive barrier (NRB) along the Meghna River and evaluate the role of the NRB in As sequestration and release in groundwater aquifers. Shallow sediment cores, and groundwater and river water samples were collected from the east and west banks of the Meghna. Groundwater and river water samples were tested for FeT, MnT, and AsT concentrations. Fluorescence spectroscopic characterization of groundwater dissolved organic matter (DOM) provided insight into the hydro geochemical reactions active in the groundwater and the hyporheic zones. Eight sediment cores of 1.5 m depth were collected 10 m away from the edge of the river. Vertical solid phase concentration profiles of Fe, Mn and As were measured via 1.2 M HCl digestion which revealed solid phase As accumulation along the riverbanks up to concentrations of 1500 mg/kg As. Microbial interactions with DOM prompts the reduction of Fe3+ to Fe2+, causing As to mobilize into groundwater and humic-like DOM present in the groundwater may catalyze this process. The extent to which microbially mediated release of As occurs is limited by labile dissolved organic carbon (DOC) availability. Aqueous geochemical results showed the highest dissolved As concentrations in shallow wells (<30 m depth), where organic matter was fresh, humic-like, and aromatic. Based on fluorescence characterization, shallow groundwater was found to contain microbial and terrestrial derived DOC, and decomposed, humified and aromatic DOM. Deeper aquifers had a significantly larger microbial OM signature than the shallower aquifers and was less aromatic, decomposed and humified. The results from this study illustrate the potential for humic substances to contribute to As cycling and quantify the extent of As accumulation in the sediments and groundwater along a 1 km stretch of the Meghna. These findings contribute to the overall understanding of geochemical processes involved in As release into groundwaters from sediments within a fluvial deltaic environment and close proximity to a possible permeable natural reactive barrier.

Microbial Diversity of Groundwater from Deep Subsurface Environment

NASA Astrophysics Data System (ADS)

Lin, L.; Onstott, T. C.; Hall, J.

2002-12-01

The subsurface environment harbors one of the most abundant reservoirs of biomass on Earth. The distribution of microbial ecosystems and the diversity of microbial metabolisms there remained poorly understood due to lack of detailed sampling over three-dimensional space with extremely heterogeneous characteristics. South African Au mines, however, provide the best access in the world to various types of groundwater and rocks at depths up to 4 km below surface. In this study, we present our recent analyses of microbial community structure of groundwater (with residence time of several million years) collected from depths between 850 to 1500 mbsl of Beatrix Au mine, South Africa. Five groundwater samples were collected anaerobically from freshly drilling boreholes with flow rates of 1 to 38 L/min. Cells were concentrated through filtration and total DNA were extracted from filters and PCR-amplified with primers targeting 16S rDNA gene. The amplicons were cloned and digested with restriction enzymes to identify the unique clone type. Sequences were obtained through direct sequencing of representative clones and compared with the closest matching sequences deposited in the gene bank for the construction of phylogenetic tree. The archaeal signatures were only found in one sample and close to the lineage of methanosarcina. The most predominant ribotype was similar to the environmental clone found in the same mine under the species level while the rest of ribotypes were either close to those capable of methanogenesis from long-chain alkanes or found in rice field or were distant from other environmental clones reported in previous study (Takai et al., 2001). The bacterial community exhibited a wide range of diversity among samples. Most samples were dominated by sequences close to alpha proteobacteria with various proportions of beta, gamma proteobacteria and environmental clones. A significant proportion of sequences close to thermophilic delta proteobacteria and clostridia were observed from one of the deepest samples. Since the in-situ water or rock temperature at sampling location is below the temperature range for thermophilic bacteria, this might indicate that the microorganisms once colonizing in the deeper and hotter portion of crust were transported upward with hydrothermal fluid and preserved in the sealed water pocket for a time scale of millions of years.

Adaptive Delta Management: cultural aspects of dealing with uncertainty

NASA Astrophysics Data System (ADS)

Timmermans, Jos; Haasnoot, Marjolijn; Hermans, Leon; Kwakkel, Jan

2016-04-01

Deltas are generally recognized as vulnerable to climate change and therefore a salient topic in adaptation science. Deltas are also highly dynamic systems viewed from physical (erosion, sedimentation, subsidence), social (demographic), economic (trade), infrastructures (transport, energy, metropolization) and cultural (multi-ethnic) perspectives. This multi-faceted dynamic character of delta areas warrants the emergence of a branch of applied adaptation science, Adaptive Delta Management, which explicitly focuses on climate adaptation of such highly dynamic and deeply uncertain systems. The application of Adaptive Delta Management in the Dutch Delta Program and its active international dissemination by Dutch professionals results in the rapid dissemination of Adaptive Delta Management to deltas worldwide. This global dissemination raises concerns among professionals in delta management on its applicability in deltas with cultural conditions and historical developments quite different from those found in the Netherlands and the United Kingdom where the practices now labelled as Adaptive Delta Management first emerged. This research develops an approach and gives a first analysis of the interaction between the characteristics of different approaches in Adaptive Delta Management and their alignment with the cultural conditions encountered in various delta's globally. In this analysis, first different management theories underlying approaches to Adaptive Delta Management as encountered in both scientific and professional publications are identified and characterized on three dimensions: The characteristics dimensions used are: orientation on today, orientation on the future, and decision making (Timmermans, 2015). The different underlying management theories encountered are policy analysis, strategic management, transition management, and adaptive management. These four management theories underlying different approaches in Adaptive Delta Management are connected to Hofstede's (1983) cultural dimensions, of which uncertainty avoidance and long-term orientation are of particular relevance for our analysis. Our conclusions comment on the suitability of approaches in Adaptive Delta Management rooted in different management theories are more suitable for specific delta countries than others. The most striking conclusion is the unsuitability of rational policy analytic approaches for The Netherlands. Although surprising this conclusion finds some support in the process dominated approach taken in the Dutch Delta Program. In addition, the divergence between Vietnam, Bangladesh and Myanmar, all located in South East Asia, is striking. References Hofstede, G. (1983). The cultural relativity of organizational practices and theories. Journal of international business studies, 75-89. Jos Timmermans, Marjolijn Haasnoot, Leon Hermans, Jan Kwakkel, Martine Rutten and Wil Thissen (2015). Adaptive Delta Management: Roots and Branches, IAHR The Hague 2015.

What's on the Surface? Physics and Chemistry of Delta-Doped Surfaces

NASA Technical Reports Server (NTRS)

Hoenk, Michael

2011-01-01

Outline of presentation: 1. Detector surfaces and the problem of stability 2. Delta-doped detectors 3. Physics of Delta-doped Silicon 4. Chemistry of the Si-SiO2 Interface 5. Physics and Chemistry of Delta-doped Surfaces a. Compensation b. Inversion c. Quantum exclusion. Conclusions: 1. Quantum confinement of electrons and holes dominates the behavior of delta-doped surfaces. 2. Stability of delta-doped detectors: Delta-layer creates an approx 1 eV tunnel barrier between bulk and surface. 3. At high surface charge densities, Tamm-Shockley states form at the surface. 4. Surface passivation by quantum exclusion: Near-surface delta-layer suppresses T-S trapping of minority carriers. 5. The Si-SiO2 interface compensates the surface 6. For delta-layers at intermediate depth, surface inversion layer forms 7. Density of Si-SiO2 interface charge can be extremely high (>10(exp 14)/sq cm)

Circuits and methods for impedance determination using active measurement cancelation

DOEpatents

Jamison, David K.

2016-12-13

A delta signal and opposite delta signal are generated such that a sum of the two signals is substantially zero. The delta signal is applied across a first set of electrochemical cells. The opposite delta signal is applied across a second set of electrochemical cells series connected to the first set. A first held voltage is established as the voltage across the first set. A second held voltage is established as the voltage across the second set. A first delta signal is added to the first held voltage and applied to the first set. A second delta signal is added to the second held voltage and applied to the second set. The current responses due to the added delta voltages travel only into the set associated with its delta voltage. The delta voltages and the current responses are used to calculate the impedances of their associated cells.

Alteration in the level of endogenous hypothalamic prostaglandins induced by delta 9-tetrahydrocannabinol in the rat.

PubMed Central

Coupar, I. M.; Taylor, D. A.

1982-01-01

1 Whole brain and regional brain levels of prostaglandin E2 (PGE2)-like material have been determined following administration of delta 9-tetrahydrocannabinol (delta 9 -THC) in rats. 2 Intravenous administration of delta 9-THC 2 mg/kg, resulted in marked behavioural changes and hypothermia. The behavioural changes consisted mainly of catatonia (most apparent at 30 min after administration of delta 9-THC), followed by sedation (most evident at 60 min). Hypothermia was marked from 30 min after administration of delta 9-THC. 3 delta 9-THC did not after the whole brain levels of PGE2-like material 30, 60 or 120 min after administration. 4 delta 9-THC did not alter the levels of PGE2-like material in the medulla oblongata/pons, midbrain, cortex and cerebellum, 30 min after administration. However, there was a significant reduction of PGE2-like material in the hypothalamus, 30 min after delta 9-THC. 5 It is suggested that the delta 9-THC-induced decrease in hypothalamic PGE2-like material may contribute to the hypothermia observed following delta 9-THC administration. PMID:6282371

Pheromones and pheromone receptors are required for proper sexual development in the homothallic ascomycete Sordaria macrospora.

PubMed

Mayrhofer, Severine; Weber, Jan M; Pöggeler, Stefanie

2006-03-01

The homothallic, filamentous ascomycete Sordaria macrospora is self-fertile and produces sexual fruiting bodies (perithecia) without a mating partner. Even so, S. macrospora transcriptionally expresses two pheromone-precursor genes (ppg1 and ppg2) and two pheromone-receptor genes (pre1 and pre2). The proteins encoded by these genes are similar to alpha-factor-like and a-factor-like pheromones and to G-protein-coupled pheromone receptors of the yeast Saccharomyces cerevisiae. It has been suggested that in S. macrospora, PPG1/PRE2 and PPG2/PRE1 form two cognate pheromone-receptor pairs. To investigate their function, we deleted (delta) pheromone-precursor genes (delta ppg1, delta ppg2) and receptor genes (delta pre1, delta pre2) and generated single- as well as double-knockout strains. No effect on vegetative growth, fruiting-body, and ascospore development was seen in the single pheromone-mutant and receptor-mutant strains, respectively. However, double-knockout strains lacking any compatible pheromone-receptor pair (delta pre2/delta ppg2, delta pre1/delta ppg1) and the double-pheromone mutant (delta ppg1/delta ppg2) displayed a drastically reduced number of perithecia and sexual spores, whereas deletion of both receptor genes (delta pre1/delta pre2) completely eliminated fruiting-body and ascospore formation. The results suggest that pheromones and pheromone receptors are required for optimal sexual reproduction of the homothallic S. macrospora.

Growth laws for sub-delta crevasses in the Mississippi River Delta

NASA Astrophysics Data System (ADS)

Yocum, T. A.; Georgiou, I. Y.; Straub, K. M.

2017-12-01

River deltas are threatened by environmental change, including subsidence, global sea level rise, reduced sediment inputs and other local factors. In the Mississippi River Delta (MRD) these impacts are exemplified, and have led to proposed solutions to build land that include sediment diversions to reinitiate the delta cycle. Deltas were studied extensively using numerical models, theoretical and conceptual frameworks, empirical scaling relationships, laboratory models and field observations. But predicting the future of deltas relies on field observations where for most deltas data are still lacking. Moreover, empirical and theoretical scaling laws may be influenced by the data used to develop them, while laboratory deltas may be influenced by scaling issues. Anthropogenic crevasses in the MRD are large enough to overcome limitations of laboratory deltas, and small enough to allow for rapid channel and wetland development, providing an ideal setting to investigate delta development mechanics. Here we assessed growth laws of sub-delta crevasses (SDC) in the MRD, in two experimental laboratory deltas (LD - weakly and strongly cohesive) and compared them to river dominated deltas worldwide. Channel and delta geometry metrics for each system were obtained using geospatial tools, bathymetric datasets, sediment size, and hydrodynamic observations. Results show that SDC follow growth laws similar to large river dominated deltas, with the exception of some that exhibit anomalous behavior with respect to the frequency and distance to a bifurcation and the fraction of wetted delta shoreline (allometry metrics). Most SDC exhibit a systematic decrease of non-dimensional channel geometries with increased bifurcation order, indicating that channels are adjusting to decreased flow after bifurcations occur, and exhibit linear trends for land allometry and width-depth ratio, although geometries decrease more rapidly per bifurcation order. Measured distance to bifurcations in SDC and LD appear longer compared to those predicted by power law metrics. With less channel splitting in some crevasses, channel extension creates wetted perimeter faster than or at the same rate as wetted area, which explains why some SDC displayed fractal growth of the wetted allometry.

Effect of environmental change on the morphology of tidally influenced deltas over multi-decadal timescale

NASA Astrophysics Data System (ADS)

Angamuthu, Balaji; Darby, Stephen; Nicholls, Robert

2017-04-01

An understanding of the geomorphological processes affecting deltas is essential to improve our understanding of the risks that deltas face, especially as human impacts are likely to intensify in the future. Unfortunately, there is limited reliable data on river deltas, meaning that the task of demonstrating the links between morphodynamic and environmental change is challenging. This presentation aims to answer the questions of how delta morphology evolves over multi-decadal timescales under multiple drivers, focussing on tidally-influenced deltas, as some of these, such as the Ganges-Brahmaputra-Meghna (GBM) delta are heavily populated. A series of idealised model simulations over 102 years were used to explore the influence of three key drivers on delta morphodynamics, both individually and together: (i) varying combinations of water and sediment discharges from the upstream catchment, (ii) varying rates of relative sea-level rise (RSLR), and (iii) selected human interventions within the delta, such as polders, cross-dams and changing land cover. Model simulations revealed that delta progradation rates are more sensitive to variations in water discharge than variations in fluvial sediment supply. Unlike mere aggradation during RSLR, the delta front experienced aggradational progradation due to tides. As expected, the area of the simulated sub-aerial delta increases with increasing sediment discharge, but decreases with increasing water discharge. But, human modifications are important. For example, the sub-aerial delta shrinks with increasing RSLR, but it does not when the sub-aerial delta is polderised, provided the polders are restricted from erosion. However, the polders are vulnerable to flooding as they lose relative elevation and can make the delta building process unsustainable. Cross-dams built to steer zones of land accretion within the delta accomplish their local goal, but may not result in net land gain at the scale of the delta. Applying these results to the contemporary GBM delta implies that cross-dams and polders have been a key control on the morphodynamic evolution of the GBM delta over the last 60 years. However, with increased fluvial water discharge and rates of RSLR likely under greenhouse gas (GHG) -driven warming, the continuing use of sediment starved polders will only increase the vulnerability of poldered areas from regular flooding, and eventually may lead to catastrophic, permanent, inundation of the land. Hence, the future trend of morphological evolution of the GBM delta depends on local human intervention, including measures to raise the elevation of the land to cope with the continuing trend of RSLR and varying fluvial discharges. The model findings provide a basis to establish guidelines for planned future management interventions to prevent the delta from destruction.

Authenticity assessment of gamma- and delta-decalactone from prunus fruits by gas chromatography combustion/pyrolysis isotope ratio mass spectrometry (GC-C/P-IRMS).

PubMed

Tamura, Hirotoshi; Appel, Markus; Richling, Elke; Schreier, Peter

2005-06-29

Authenticity assessment of gamma-decalactone (1) and delta-decalactone (2) from peach (Prunus persica var. persica), apricot (Prunus armeniaca), and nectarine (Prunus persica var. nectarina) was performed using gas chromatography-isotope ratio mass spectrometry (GC-IRMS) in the combustion (C) and pyrolysis (P) mode. In addition, commercially available synthetic (nature-identical) 1 and 2 as well as biotechnologically produced samples (declared to be "natural") were characterized by their delta(2)H(V)(-)(SMOW) and delta(13)C(V)(-)(PDB) values. For the Prunus fruits under study, rather narrow ranges of delta(13)C(V)(-)(PDB) and delta(2)H(V)(-)(SMOW) data of 1, varying from - 34.6 per thousand to - 38.4 per thousand and -160 per thousand to -206 per thousand, respectively, were obtained. Synthetic references of 1 showed delta(13)C(V)(-)(PDB) and delta(2)H(V)(-)(SMOW) data ranging from -27.4 per thousand to -28.3 per thousand and -151 per thousand to -184 per thousand, respectively. Samples of 1 declared to be "natural" exhibited ranges from -28.1 per thousand to -29.2 per thousand and -192 per thousand to -286 per thousand for delta(13)C(V)(-)(PDB) and delta(2)H(V)(-)(SMOW), respectively. For 2 from peach, apricot, and nectarine, delta(13)C(V)(-)(PDB) values ranging from -34.0 per thousand to -37.9 per thousand were determined; the delta(2)H(V)(-)(SMOW) values ranged from -171 per thousand to -228 per thousand. The delta(13)C(V)(-)(PDB) and delta(2)H(V)(-)(SMOW) data for synthetic 2 were -28.2 per thousand and -171 per thousand, respectively, that is, similar to those of 2 from "natural" origin, ranging from -27.7 per thousand to -30.1 per thousand and -185 per thousand to -230 per thousand for delta(13)C(V)(-)(PDB) and delta(2)H(V)(-)(SMOW), respectively. GC-C/P-IRMS allowed clear-cut analytical differentiation of the synthetic and "ex-plant" origin of 1 and 2, whereas narrow ranges of delta(13)C(V)(-)(PDB) and delta(2)H(V)(-)(SMOW) data were found for samples of synthetic and "natural" origin.

Formation of conjugated delta8,delta10-double bonds by delta12-oleic-acid desaturase-related enzymes: biosynthetic origin of calendic acid.

PubMed

Cahoon, E B; Ripp, K G; Hall, S E; Kinney, A J

2001-01-26

Divergent forms of the plant Delta(12)-oleic-acid desaturase (FAD2) have previously been shown to catalyze the formation of acetylenic bonds, epoxy groups, and conjugated Delta(11),Delta(13)-double bonds by modification of an existing Delta(12)-double bond in C(18) fatty acids. Here, we report a class of FAD2-related enzymes that modifies a Delta(9)-double bond to produce the conjugated trans-Delta(8),trans-Delta(10)-double bonds found in calendic acid (18:3Delta(8trans,10trans,12cis)), the major component of the seed oil of Calendula officinalis. Using an expressed sequence tag approach, cDNAs for two closely related FAD2-like enzymes, designated CoFADX-1 and CoFADX-2, were identified from a C. officinalis developing seed cDNA library. The deduced amino acid sequences of these polypeptides share 40-50% identity with those of other FAD2 and FAD2-related enzymes. Expression of either CoFADX-1 or CoFADX-2 in somatic soybean embryos resulted in the production of calendic acid. In embryos expressing CoFADX-2, calendic acid accumulated to as high as 22% (w/w) of the total fatty acids. In addition, expression of CoFADX-1 and CoFADX-2 in Saccharomyces cerevisiae was accompanied by calendic acid accumulation when induced cells were supplied exogenous linoleic acid (18:2Delta(9cis,12cis)). These results are thus consistent with a route of calendic acid synthesis involving modification of the Delta(9)-double bond of linoleic acid. Regiospecificity for Delta(9)-double bonds is unprecedented among FAD2-related enzymes and further expands the functional diversity found in this family of enzymes.

The role of peroxisome proliferator-activated receptor-{beta}/{delta} in epidermal growth factor-induced HaCaT cell proliferation

DOE Office of Scientific and Technical Information (OSTI.GOV)

Liang Pengfei; Jiang Bimei; Yang Xinghua

2008-10-15

Epidermal growth factor (EGF) has been shown to be a potent mitogen for epidermal cells both in vitro and in vivo, thus contributing to the development of an organism. It has recently become clear that peroxisome proliferator-activated receptor-{beta}/{delta} (PPAR{beta}/{delta}) expression and activation is involved in the cell proliferation. However, little is known about the role of PPAR{beta}/{delta} in EGF-induced proliferation of HaCaT keratinocytes. In this study, HaCaT cells were cultured in the presence and absence of EGF and we identified that EGF induced an increase of PPAR{beta}/{delta} mRNA and protein level expression in time-dependent and dose-dependent manner, and AG1487, anmore » EGF receptor (EGFR) special inhibitor, caused attenuation of PPAR{beta}/{delta} protein expression. Electrophoretic mobility shift assay (EMSA) revealed that EGF significantly increased PPAR{beta}/{delta} binding activity in HaCaT keratinocytes. Antisense phosphorothioate oligonucleotides (asODNs) against PPAR{beta}/{delta} caused selectively inhibition of PPAR{beta}/{delta} protein content induced by EGF and significantly attenuated EGF-mediated cell proliferation. Treatment of the cells with L165041, a specific synthetic ligand for PPAR{beta}/{delta}, significantly enhanced EGF-mediated cell proliferation. Finally, c-Jun ablation inhibited PPAR{beta}/{delta} up-regulation induced by EGF, and chromatin immunoprecipitation (ChIP) showed that c-Jun bound to the PPAR{beta}/{delta} promoter and the binding increased in EGF-stimulated cells. These results demonstrate that EGF induces PPAR{beta}/{delta} expression in a c-Jun-dependent manner and PPAR{beta}/{delta} plays a vital role in EGF-stimulated proliferation of HaCaT cells.« less

New decision criteria for selecting delta check methods based on the ratio of the delta difference to the width of the reference range can be generally applicable for each clinical chemistry test item.

PubMed

Park, Sang Hyuk; Kim, So-Young; Lee, Woochang; Chun, Sail; Min, Won-Ki

2012-09-01

Many laboratories use 4 delta check methods: delta difference, delta percent change, rate difference, and rate percent change. However, guidelines regarding decision criteria for selecting delta check methods have not yet been provided. We present new decision criteria for selecting delta check methods for each clinical chemistry test item. We collected 811,920 and 669,750 paired (present and previous) test results for 27 clinical chemistry test items from inpatients and outpatients, respectively. We devised new decision criteria for the selection of delta check methods based on the ratio of the delta difference to the width of the reference range (DD/RR). Delta check methods based on these criteria were compared with those based on the CV% of the absolute delta difference (ADD) as well as those reported in 2 previous studies. The delta check methods suggested by new decision criteria based on the DD/RR ratio corresponded well with those based on the CV% of the ADD except for only 2 items each in inpatients and outpatients. Delta check methods based on the DD/RR ratio also corresponded with those suggested in the 2 previous studies, except for 1 and 7 items in inpatients and outpatients, respectively. The DD/RR method appears to yield more feasible and intuitive selection criteria and can easily explain changes in the results by reflecting both the biological variation of the test item and the clinical characteristics of patients in each laboratory. We suggest this as a measure to determine delta check methods.

Offshore Deterioration in the Mekong Delta, Vietnam

NASA Astrophysics Data System (ADS)

Stattegger, K.; Unverricht, D.; Heinrich, C.

2016-02-01

The interplay of river, tide and wave forcing controls shape and sedimentation at the front of the Mekong Delta. Specific hydro- and morphodynamic conditions in the western subaqueous part of the asymmetric Mekong Delta generate a sand ridge - channel system (SRCS) which is unique in subaqueous delta formation. This large-scale morphological element extends 130 km along the delta front consisting of two sand ridges and two erosional channels. Three different zones within SRCS can be distinguished. The eastern initial zone stretches along delta slope and inner shelf platform southwest of the Bassac river mouth, the largest and westernmost distributary of the Mekong Delta. In the central zone SRCS covers the outer part of the subaqueous delta platform with a pronounced sand-ridge and erosional channel morphology. Cross-sections of the SRCS reveal an asymmetric shape including steeper ridge flanks facing into offshore direction. Channels incise down to 18.2 m water depth (wd) and 10.5 down the ridge top at the outer subaqueous delta platform, respectively. Towards the west the sand ridges pinch out while the two channels merge into one and form a giant erosional scour of up to 33 m wd within the subaqueous delta platform. In the western zone, the channel gets shallower and vanishes along the south-western edge of the subaqueous delta platform around Ca Mau Cape. Sediment transport from the Mekong River nourishes the sand ridges. In contrast, tide and wind-driven currents cut the erosional channels, which act also as fine-sediment conveyor from eroding headlands to the distal part of the delta front that is 200 km apart of the Bassac river mouth. SRCS in the subaqueous Mekong Delta is a relevant indicator of delta-front instability and erosion.

A mouse model for the cystic fibrosis delta F508 mutation.

PubMed Central

van Doorninck, J H; French, P J; Verbeek, E; Peters, R H; Morreau, H; Bijman, J; Scholte, B J

1995-01-01

Most cystic fibrosis (CF) patients produce a mutant form (delta F508) of the cystic fibrosis transmembrane conductance regulator (CFTR), which is not properly processed in normal cells but is active as a chloride channel in several experimental systems. We used a double homologous recombination ('Hit and Run') procedure to generate a mouse model for the delta F508 mutation. Targeted embryonic stem (ES) cells (Hit clones) were found; of these either 80 or 20% of the clones had lost the delta F508 mutation, depending on the distance between the linearization site in the targeting construct and the delta F508 mutation. Correctly targeted clones underwent a second selection step resulting in ES cell clones (Run clones) heterozygous for the delta F508 mutation with an efficiency of 2-7%. Chimeric mice were generated and offspring homozygous for the delta F508 mutation showed electrophysiological abnormalities in nasal epithelium, gallbladder and in the intestine, and histological abnormalities in the intestine, typical of CF. Our data suggest that the delta F508 mice have residual delta F508 CFTR activity which would explain the mild pathology of the delta F508 mice. The delta F508 mouse may provide a useful model for the study of the processing defect of delta F508 CFTR and for the development of novel therapeutic approaches based on circumvention of the processing block. Images PMID:7556083

Deciphering the record of short-term base-level changes in Gilbert-type deltas

NASA Astrophysics Data System (ADS)

Gobo, Katarina; Ghinassi, Massimiliano; Nemec, Wojciech

2016-04-01

The geometrical relationship of fluvial topset to subaqueous foreset in a Gilbert-type delta may be 'sigmoidal' (transitional) or 'oblique' (erosional), which is generally attributed - respectively - to a rise or fall of the delta shoreline's time-distance trajectory and considered to reflect base-level changes. However, since every episode of a base-level fall forces the fluvial distributary system to cut down, the delta-brink sigmoidal signature of a preceding base-level rise tends to be removed. The geometrical record of short-term base-level changes in a Gilbert-type delta thus tends to be obliterated by fluvial erosion. The issue addressed in this presentation is whether the fully-preserved foreset to bottomset deposits may serve as a key for deciphering the base-level history of an ancient Gilbert-type delta. Outcrop studies of Plio-Pleistocene Gilbert-type deltas at the southern margin of the Corinth Rift, Greece, reveal a genetic relationship between the delta-brink morphodynamics controlled by base level behaviour and the processes of subaqueous sediment dispersal on the delta slope and in its foot zone. The component facies are deposits of turbidity currents (whether slope-derived brief surges or longer-duration hyperpycnal flows), cohesionless debrisflows and loose-gravel debrisfalls. The development of sigmoidal delta-brink architecture appears to be accompanied by deposition of a debrite-dominated facies assemblage (DFA) of delta foreset beds, thought to form when the aggrading delta front tends to store sediment and undergoes discrete gravitational collapses. Development of oblique delta-brink architecture is accompanied by deposition of a turbidite-dominated facies assemblage (TFA) of foreset beds, which is thought to form when the delta-front accommodation decreases and the sediment carried by hyperpycnal effluent largely bypasses the front. The alternation of TFA and DFA facies assemblages in delta foreset is thus attributed to changes in delta-front accommodation driven by short-term base-level changes, with some accompanying inevitable 'noise' in the facies record due to the system autogenic variability and regional climatic fluctuations. Comparison of delta coeval foreset and toeset/bottomset deposits in a delta shows further a reverse pattern of reciprocal changes in facies assemblages, with the TFA assemblage of foreset deposits passing downdip into a DFA assemblage of delta-foot deposits, and the DFA assemblage of foreset deposits passing downdip into a TFA assemblage. This reverse reciprocal alternation of TFA and DFA facies assemblages is attributed to the delta-slope own morphodynamics. When the delta slope is dominated by deposition of debrisflows, only the most diluted turbulent flows and chute bypassing turbidity currents are reaching the delta-foot zone. When the delta slope is dominated by turbiditic sedimentation, larger chutes and gullies form - triggering and conveying debrisflows to the foot zone. These case studies as a whole shed a new light on the varying pattern of subaqueous sediment dispersal processes in an evolving Gilbert-type deltaic system and point to an the attractive possibility of the recognition of a 'hidden' record of base-level changes on the basis of detailed facies analysis.

Late-Glacial to Late-holocene Shifts in Global Precipitation Delta(sup 18)O

NASA Technical Reports Server (NTRS)

Jasechko, S.; Lechler, A.; Pausata, F.S.R.; Fawcett, P.J.; Gleeson, T.; Cendon, D.I.; Galewsky, J.; LeGrande, A. N.; Risi, C.; Sharp, Z. D.;

Construction and maintenance of the Ganges-Brahmaputra-Meghna delta: linking process, morphology, and stratigraphy.

PubMed

Wilson, Carol A; Goodbred, Steven L

2015-01-01

We present a review of the processes, morphology, and stratigraphy of the Ganges-Brahmaputra-Meghna delta (GBMD), including insights gained from detailed elevation data. The review shows that the GBMD is best characterized as a composite system, with different regions having morphologic and stratigraphic attributes of an upland fluvial fan delta; a lowland, backwater-reach delta; a downdrift tidal delta plain; and an offshore subaqueous-delta clinoform. These distinct areas of upland and lowland fluvial reaches and tidal dominance vary in time and space, and we distinguish late-Holocene phases of delta construction, maintenance, and decline similar to delta-lobe cycling in other systems. The overall stability of the GBMD landform, relative to many deltas, reflects the efficient, widespread dispersal of sediment by the large monsoon discharge and high-energy tides that affect this region. However, we do identify portions of the delta that are in decline and losing elevation relative to sea level owing to insufficient sediment delivery. These areas, some of which are well inland of the coast, represent those most at risk to the continued effect of sea-level rise.

Investigation of television transmission using adaptive delta modulation principles

NASA Technical Reports Server (NTRS)

Schilling, D. L.

1976-01-01

The results are presented of a study on the use of the delta modulator as a digital encoder of television signals. The computer simulation of different delta modulators was studied in order to find a satisfactory delta modulator. After finding a suitable delta modulator algorithm via computer simulation, the results were analyzed and then implemented in hardware to study its ability to encode real time motion pictures from an NTSC format television camera. The effects of channel errors on the delta modulated video signal were tested along with several error correction algorithms via computer simulation. A very high speed delta modulator was built (out of ECL logic), incorporating the most promising of the correction schemes, so that it could be tested on real time motion pictures. Delta modulators were investigated which could achieve significant bandwidth reduction without regard to complexity or speed. The first scheme investigated was a real time frame to frame encoding scheme which required the assembly of fourteen, 131,000 bit long shift registers as well as a high speed delta modulator. The other schemes involved the computer simulation of two dimensional delta modulator algorithms.

Successive changes in community structure of an ethylbenzene-degrading sulfate-reducing consortium.

PubMed

Nakagawa, Tatsunori; Sato, Shinya; Yamamoto, Yoko; Fukui, Manabu

2002-06-01

The microbial community structure and successive changes in a mesophilic ethylbenzene-degrading sulfate-reducing consortium were for the first time clarified by the denaturing gradient gel electrophoresis (DGGE) analysis of the PCR amplified 16S rRNA gene fragments. At least ten bands on the DGGE gel were detected in the stationary phase. Phylogenetic analysis of the DGGE bands revealed that the consortium consisted of different eubacterial phyla including the delta subgroup of Proteobacteria, the order Sphingobacteriales, the order Spirochaetales, and the unknown bacterium. The most abundant band C was closely related to strain mXyS1, an m-xylene-degrading sulfate-reducing bacterium (SRB), and occurred as a sole band on DGGE gels in the logarithmic growth phase that 40% ethylbenzene was consumed accompanied by sulfide production. During further prolonged incubation, the dominancy of band C did not change. These results suggest that SRB corresponds to the most abundant band C and contributes mainly to the degradation of ethylbenzene coupled with sulfate reduction.

The deltaA gene of zebrafish mediates lateral inhibition of hair cells in the inner ear and is regulated by pax2.1.

PubMed

Riley, B B; Chiang, M; Farmer, L; Heck, R

1999-12-01

Recent studies of inner ear development suggest that hair cells and support cells arise within a common equivalence group by cell-cell interactions mediated by Delta and Notch proteins. We have extended these studies by analyzing the effects of a mutant allele of the zebrafish deltaA gene, deltaA(dx2), which encodes a dominant-negative protein. deltaA(dx2/dx2 )homozygous mutants develop with a 5- to 6-fold excess of hair cells and a severe deficiency of support cells. In addition, deltaA(dx2/dx2) mutants show an increased number of cells expressing pax2.1 in regions where hair cells are normally produced. Immunohistological analysis of wild-type and deltaA(dx2/dx2) mutant embryos confirmed that pax2.1 is expressed during the initial stages of hair cell differentiation and is later maintained at high levels in mature hair cells. In contrast, pax2.1 is not expressed in support cells. To address the function of pax2.1, we analyzed hair cell differentiation in no isthmus mutant embryos, which are deficient for pax2.1 function. no isthmus mutant embryos develop with approximately twice the normal number of hair cells. This neurogenic defect correlates with reduced levels of expression of deltaA and deltaD in the hair cells in no isthmus mutants. Analysis of deltaA(dx2/dx2); no isthmus double mutants showed that no isthmus suppresses the deltaA(dx2) phenotype, probably by reducing levels of the dominant-negative mutant protein. This interpretation was supported by analysis of T(msxB)(b220), a deletion that removes the deltaA locus. Reducing the dose of deltaA(dx2) by generating deltaA(dx2)/T(msxB)(b220 )trans-heterozygotes weakens the neurogenic effects of deltaA(dx2), whereas T(msxB)(b220) enhances the neurogenic defects of no isthmus. mind bomb, another strong neurogenic mutation that may disrupt reception of Delta signals, causes a 10-fold increase in hair cell production and is epistatic to both no isthmus and deltaA(dx2). These data indicate that deltaA expressed by hair cells normally prevents adjacent cells from adopting the same cell fate, and that pax2.1 is required for normal levels of Delta-mediated lateral inhibition.

Cannabinoids in glaucoma II: the effect of different cannabinoids on intraocular pressure of the rabbit.

PubMed

ElSohly, M A; Harland, E C; Benigni, D A; Waller, C W

1984-06-01

Thirty-two different cannabinoids were tested for their ability to reduce intraocular pressure (IOP) in the rabbit. These included many of delta 9- and delta 8-THC derivatives and metabolites along with other natural and synthetic cannabinoids. In addition, some non-cannabinoid constituents of Cannabis were screened using the same model. All compounds were administered intravenously, while only a few were tested topically in mineral oil. Water soluble derivatives of delta 9- and delta 8-THC were prepared and tested topically in aqueous solution. The data revealed that certain derivatives of delta 9-and delta 8-THC were more active in lowering IOP than the parent cannabinoids. In addition, compounds other than delta 9- and delta 8-THC and their derivatives were shown to have activity.

Uncertainties in derived temperature-height profiles

NASA Technical Reports Server (NTRS)

Minzner, R. A.

1974-01-01

Nomographs were developed for relating uncertainty in temperature T to uncertainty in the observed height profiles of both pressure p and density rho. The relative uncertainty delta T/T is seen to depend not only upon the relative uncertainties delta P/P or delta rho/rho, and to a small extent upon the value of T or H, but primarily upon the sampling-height increment Delta h, the height increment between successive observations of p or delta. For a fixed value of delta p/p, the value of delta T/T varies inversely with Delta h. No limit exists in the fineness of usable height resolution of T which may be derived from densities, while a fine height resolution in pressure-height data leads to temperatures with unacceptably large uncertainties.

Image Guidance in External Beam Accelerated Partial Breast Irradiation: Comparison of Surrogates for the Lumpectomy Cavity

DOE Office of Scientific and Technical Information (OSTI.GOV)

Hasan, Yasmin; Kim, Leonard; Martinez, Alvaro

Purpose: To compare localization of the lumpectomy cavity by using breast surface matching vs. clips for image-guided external beam accelerated partial breast irradiation. Methods and Materials: Twenty-seven patients with breast cancer with two computed tomography (CT) scans each had three CT registrations performed: (1) to bony anatomy, (2) to the center of mass (COM) of surgical clips, and (3) to the breast surface. The cavity COM was defined in both the initial and second CT scans after each type of registration, and distances between COMs ({delta}COM{sub Bone}, {delta}COM{sub Clips}, and {delta}COM{sub Surface}) were determined. Smaller {delta}COMs were interpreted as bettermore » localizations. Correlation coefficients were calculated for {delta}COM vs. several variables. Results: The {delta}COM{sub Bone} (mean, 7 {+-} 2 [SD] mm) increased with breast volume (r = 0.4; p = 0.02) and distance from the chest wall (r = 0.5; p = 0.003). Relative to bony registration, clip registration provided better localization ({delta}COM{sub Clips} < {delta}COM{sub Bone}) in 25 of 27 cases. Breast surface matching improved cavity localization ({delta}COM{sub Surface} < {delta}COM{sub Bone}) in 19 of 27 cases. Mean improvements ({delta}COM{sub Bone} - {delta}COM{sub ClipsorSurface}) were 4 {+-} 3 and 2 {+-} 4 mm, respectively. In terms of percentage of improvement ([{delta}COM{sub Bone} - {delta}COM{sub ClipsorSurface}]/{delta}COM{sub Bone}), only surface matching showed a correlation with breast volume. Clip localization outperformed surface registration for cavities located superior to the breast COM. Conclusions: Use of either breast surface or surgical clips as surrogates for the cavity results in improved localization in most patients compared with bony registration and may allow smaller planning target volume margins for external beam accelerated partial breast irradiation. Compared with surface registration, clip registration may be less sensitive to anatomic characteristics and therefore more broadly applicable.« less

Delta-catenin/NPRAP: A new member of the glycogen synthase kinase-3beta signaling complex that promotes beta-catenin turnover in neurons.

PubMed

Bareiss, Sonja; Kim, Kwonseop; Lu, Qun

2010-08-15

Through a multiprotein complex, glycogen synthase kinase-3beta (GSK-3beta) phosphorylates and destabilizes beta-catenin, an important signaling event for neuronal growth and proper synaptic function. delta-Catenin, or NPRAP (CTNND2), is a neural enriched member of the beta-catenin superfamily and is also known to modulate neurite outgrowth and synaptic activity. In this study, we investigated the possibility that delta-catenin expression is also affected by GSK-3beta signaling and participates in the molecular complex regulating beta-catenin turnover in neurons. Immunofluorescent light microscopy revealed colocalization of delta-catenin with members of the molecular destruction complex: GSK-3beta, beta-catenin, and adenomatous polyposis coli proteins in rat primary neurons. GSK-3beta formed a complex with delta-catenin, and its inhibition resulted in increased delta-catenin and beta-catenin expression levels. LY294002 and amyloid peptide, known activators of GSK-3beta signaling, reduced delta-catenin expression levels. Furthermore, delta-catenin immunoreactivity increased and protein turnover decreased when neurons were treated with proteasome inhibitors, suggesting that the stability of delta-catenin, like that of beta-catenin, is regulated by proteasome-mediated degradation. Coimmunoprecipitation experiments showed that delta-catenin overexpression promoted GSK-3beta and beta-catenin interactions. Primary cortical neurons and PC12 cells expressing delta-catenin treated with proteasome inhibitors showed increased ubiquitinated beta-catenin forms. Consistent with the hypothesis that delta-catenin promotes the interaction of the destruction complex molecules, cycloheximide treatment of cells overexpressing delta-catenin showed enhanced beta-catenin turnover. These studies identify delta-catenin as a new member of the GSK-3beta signaling pathway and further suggest that delta-catenin is potentially involved in facilitating the interaction, ubiquitination, and subsequent turnover of beta-catenin in neuronal cells. (c) 2010 Wiley-Liss, Inc.

Changes in the areal extents of the Athabasca River, Birch River, and Cree Creek Deltas, 1950-2014, Peace-Athabasca Delta, Canada

NASA Astrophysics Data System (ADS)

Timoney, Kevin; Lee, Peter

2016-04-01

Deltas form where riverborne sediment accumulates at the interface of river mouths and their receiving water bodies. Their areal extent is determined by the net effect of processes that increase their extent, such as sediment accumulation, and processes that decrease their extent, such as erosion and subsidence. Through sequential mapping and construction of river discharge and sediment histories, this study examined changes in the subaerial extents of the Cree Creek and Athabasca River Deltas (both on the Athabasca River system) and the Birch River Delta in northern Canada over the period 1950-2014. The purpose of the study was to determine how, when, and why the deltas changed in areal extent. Temporal growth patterns were similar across the Athabasca and Birch River systems indicative of a climatic signal. Little or no areal growth occurred from 1950 to 1968; moderate growth occurred between 1968 and the early to mid-1980s; and rapid growth occurred between 1992 and 2012. Factors that affected delta progradation included dredging, sediment supply, isostatic drowning, delta front bathymetry, sediment capture efficiency, and storms. In relation to sediment delivered, areal growth rates were lowest in the Athabasca Delta, intermediate in the Birch Delta, and highest in the Cree Creek Delta. Annual sediment delivery is increasing in the Cree Creek Delta; there were no significant trends in annual sediment delivery in the Birch and Athabasca Deltas. There was a lag of up to several years between sediment delivery events and progradation. Periods of delta progradation were associated with low water levels of the receiving basins. Predicted climate-change driven declines in river discharge and lake levels may accelerate delta progradation in the region. In the changing ecosystems of northeastern Alberta, inadequate monitoring of vegetation, landforms, and sediment regimes hampers the elucidation of the nature, rate, and causality of ecosystem changes.

Gamma delta lymphocytes in endocrine autoimmunity: evidence of expansion in Graves' disease but not in type 1 diabetes.

PubMed Central

Roura-Mir, I C; Alcalde, L; Vargas, F; Tolosa, E; Obiols, G; Foz, M; Jaraquemada, D; Pujol-Borrell, R

1993-01-01

Endocrine autoimmune disorders are mediated by T cell-dependent responses to organ-specific antigens, but the mechanisms initiating the process remain unknown. Lymphocytes which use the gamma delta heterodimer as T cell receptor (TCR) for antigen constitute a distinct subset of T cells whose function remains elusive. In order to investigate their possible involvement in endocrine autoimmunity we have determined the proportion of gamma delta T cells in the peripheral blood of 23 patients with type 1 (insulin-dependent) diabetes mellitus (type-1 DM) and 30 patients with autoimmune thyrotoxicosis (Graves' disease). T lymphocyte TCR expression was assessed by fluorescence-activated flow cytometry on peripheral blood mononuclear cells using MoAbs UCHT1 (CD3), TCR delta 1 (gamma delta TCR), WT31 and beta F1 (alpha beta TCR) and both the percentage of T cells expressing gamma delta and the ratio gamma delta/alpha beta were calculated. In the diabetic patients gamma delta cells were not significantly different from the control group (7.7 +/- 54% versus 8.0 +/- 5.5% of T cells, P NS). There was no relation between the proportion of gamma delta lymphocytes and the presence of islet cell antibodies (ICA) in the sera. The Graves' patients showed a tendency towards a higher proportion of gamma delta T lymphocytes than the controls (gamma delta/alpha beta ratios: 0.095 +/- 0.047 versus 0.063 +/- 0.022, P = 0.03). In 14 Graves' patients the number of gamma delta were measured in paired samples of peripheral and intrathyroidal lymphocytes, demonstrating an expansion of gamma delta within the thyroid glands (0.21 +/- 0.3 versus 0.095 +/- 0.047, P = 0.032). Immunohistochemical studies showed that gamma delta cells were scattered among the predominant alpha beta lymphocytes infiltrating the thyroid gland and that they account for 10% of intraepithelial lymphocytes. No relation was found between the increase of gamma delta lymphocytes and any clinical features. PMID:8485915

Medicinal cannabis: is delta9-tetrahydrocannabinol necessary for all its effects?

PubMed

Wilkinson, J D; Whalley, B J; Baker, D; Pryce, G; Constanti, A; Gibbons, S; Williamson, E M

2003-12-01

Cannabis is under clinical investigation to assess its potential for medicinal use, but the question arises as to whether there is any advantage in using cannabis extracts compared with isolated Delta9-trans-tetrahydrocannabinol (Delta9THC), the major psychoactive component. We have compared the effect of a standardized cannabis extract (SCE) with pure Delta9THC, at matched concentrations of Delta9THC, and also with a Delta9THC-free extract (Delta9THC-free SCE), using two cannabinoid-sensitive models, a mouse model of multiple sclerosis (MS), and an in-vitro rat brain slice model of epilepsy. Whilst SCE inhibited spasticity in the mouse model of MS to a comparable level, it caused a more rapid onset of muscle relaxation, and a reduction in the time to maximum effect compared with Delta9THC alone. The Delta9THC-free extract or cannabidiol (CBD) caused no inhibition of spasticity. However, in the in-vitro epilepsy model, in which sustained epileptiform seizures were induced by the muscarinic receptor agonist oxotremorine-M in immature rat piriform cortical brain slices, SCE was a more potent and again more rapidly-acting anticonvulsant than isolated Delta9THC, but in this model, the Delta9THC-free extract also exhibited anticonvulsant activity. Cannabidiol did not inhibit seizures, nor did it modulate the activity of Delta9THC in this model. Therefore, as far as some actions of cannabis were concerned (e.g. antispasticity), Delta9THC was the active constituent, which might be modified by the presence of other components. However, for other effects (e.g. anticonvulsant properties) Delta9THC, although active, might not be necessary for the observed effect. Above all, these results demonstrated that not all of the therapeutic actions of cannabis herb might be due to the Delta9THC content.

delta 6 Hexadecenoic acid is synthesized by the activity of a soluble delta 6 palmitoyl-acyl carrier protein desaturase in Thunbergia alata endosperm.

PubMed

Cahoon, E B; Cranmer, A M; Shanklin, J; Ohlrogge, J B

1994-11-04

delta 6 Hexadecenoic acid (16:1 delta 6) composes more than 80% of the seed oil of Thunbergia alata. Studies were conducted to determine the biosynthetic origin of the double bond of this unusual fatty acid. Assays of fractions of developing T. alata seed endosperm with [1-14C]palmitoyl (16:0)-acyl carrier protein (ACP) revealed the presence of a soluble delta 6 desaturase activity. This activity was greatest when 16:0-ACP was provided as a substrate, whereas no desaturation of the coenzyme A ester of this fatty acid was detected. In addition, delta 6 16:0-ACP desaturase activity in T. alata endosperm extracts was dependent on the presence of ferredoxin and molecular oxygen and was stimulated by catalase. To further characterize this enzyme, a cDNA encoding a diverged acyl-ACP desaturase was isolated from a T. alata endosperm cDNA library using polymerase chain reaction with degenerate oligonucleotides corresponding to conserved amino acid sequences in delta 9 stearoyl (18:0)- and delta 4 16:0-ACP desaturases. The primary structure of the mature peptide encoded by this cDNA shares 66% identity with the mature castor delta 9 18:0-ACP desaturase and 57% identity with the mature coriander delta 4 16:0-ACP desaturase. Extracts of Escherichia coli that express the T. alata cDNA catalyzed the delta 6 desaturation of 16:0-ACP. These results demonstrate that 16:1 delta 6 in T. alata endosperm is formed by the activity of a soluble delta 6 16:0-ACP desaturase that is structurally related to the delta 9 18:0- and delta 4 16:0-ACP desaturases. Implications of this work to an understanding of active site structures of acyl-ACP desaturases are discussed.

Caracterizacion de materiales magnetoelasticos y su aplicacion al control de vibraciones

NASA Astrophysics Data System (ADS)

Morales Robredo, Angel Luis

The characterization and application of magnetoelastic materials to problems of vibration control is tackled in this thesis. Although this subject has been thoroughly studied since the nineteenth century, and despite the fact that this type of material is currently of topical interest due to their use as smart materials in several fields of science and engineering, there is room for further research in this field, specially in topics concerning measurement and application of DeltaE- and DeltaΨ- effects. Throughout this work, several contributions can be found. First, a new experimental system for measuring both DeltaE- and DeltaΨ- effects, simultaneously, has been developed with new or improved features. Second, this new experimental system has been used to characterize in depth the three classical ferromagnetic materials, nickel, cobalt and iron, and also Terfenol-D, a special alloy which shows a great magnetoelastic response. Third, the influence of internal stresses on both DeltaE- and DeltaΨ- effects has been studied by means of different heat treatments applied to nickel specimens. And fourth, the more suitable materials regarding their DeltaE- and DeltaΨ- effects were selected and applied to novel ways of vibration control. The results obtained in the different parts of this thesis are, in our humble opinion, very valuable. Regarding the new experimental system, the improvements endow the method with notable advantages over other techniques, such as lack of mechanical or magnetic interaction with the specimen, high accuracy and resolution in magnetic field, speed of measurement, no need for sample preparation, possibility of studying stress dependence, full automation and integration of the measurement and post-processing stages. Regarding the measurement of DeltaE- and DeltaΨ- effects, our results agree with the literature but provide better accuracy. Terfenol-D shows the highest DeltaE-effect (95%), followed at a great distance by nickel (3.75%), cobalt (0.60%) and iron (0.22%), whereas the DeltaΨ-effect is high in all cases (40% in most cases, 80% in nickel). Regarding the influence of internal stress, it is stated that annealing treatments leading to lower internal stresses maximize the magnetoelastic behaviour of the material, as in the instance of nickel were the DeltaE- and DeltaΨ- effects were maximized from 3.75% to 13.00% and from 80% to 99.99%, respectively. Finally, regarding the vibration control problem, two different strategies were tested: passive control and adaptative-passive control. Both methods showed excellent results in terms of reduction of the establishing time in free vibration (63% with annealed nickel) and in terms of reduction of the magnification factor in forced vibration (34% with annealed nickel and 64% with Terfenol-D).

Delta FosB regulates wheel running.

PubMed

Werme, Martin; Messer, Chad; Olson, Lars; Gilden, Lauren; Thorén, Peter; Nestler, Eric J; Brené, Stefan

2002-09-15

DeltaFosB is a transcription factor that accumulates in a region-specific manner in the brain after chronic perturbations. For example, repeated administration of drugs of abuse increases levels of DeltaFosB in the striatum. In the present study, we analyzed the effect of spontaneous wheel running, as a model for a natural rewarding behavior, on levels of DeltaFosB in striatal regions. Moreover, mice that inducibly overexpress DeltaFosB in specific subpopulations of striatal neurons were used to study the possible role of DeltaFosB on running behavior. Lewis rats given ad libitum access to running wheels for 30 d covered what would correspond to approximately 10 km/d and showed increased levels of DeltaFosB in the nucleus accumbens compared with rats exposed to locked running wheels. Mice that overexpress DeltaFosB selectively in striatal dynorphin-containing neurons increased their daily running compared with control littermates, whereas mice that overexpress DeltaFosB predominantly in striatal enkephalin-containing neurons ran considerably less than controls. Data from the present study demonstrate that like drugs of abuse, voluntary running increases levels of DeltaFosB in brain reward pathways. Furthermore, overexpression of DeltaFosB in a distinct striatal output neuronal population increases running behavior. Because previous work has shown that DeltaFosB overexpression within this same neuronal population increases the rewarding properties of drugs of abuse, results of the present study suggest that DeltaFosB may play a key role in controlling both natural and drug-induced reward.

Grain size controls on the morphology and stratigraphy of river-dominated deltas

NASA Astrophysics Data System (ADS)

Burpee, Alex; Parsons, Daniel; Slingerland, Rudy; Edmonds, Doug; Best, Jim; Cederberg, James; McGuffin, Andrew; Caldwell, Rebecca; Nijhuis, Austin

2015-04-01

The proportions of sand and mud that make up a river-dominated delta strongly determine its topset morphology, which in turn controls its internal facies and clinoform geometry. These relationships allow prediction of the stratigraphy of a delta using the character of its topset and reconstruction of deltaic planform from measures of clinoform geometry. This paper presents results from the Delft3D modeling system which was used to simulate nine self-formed deltas that possess different sediment loads and critical shear stresses that are required for re-entrainment of mud. The simulated deltas were set to prograde into a shallow basin without waves, tides, Coriolis forcing, and buoyancy. Model results indicate that sand-dominated deltas are more fan-shaped whilst mud-dominated deltas are more birdsfoot in planform, because the sand-dominated deltas have more active distributaries, a smaller variance of topset elevations, and thereby experience a more equitable distribution of sediment to their perimeters. This results in a larger proportion of channel facies in sand-dominated deltas, and more uniformly-distributed clinoform dip directions, steeper dips, and greater clinoform concavity. These conclusions are consistent with data collected from the Goose River Delta, a coarse-grained fan delta prograding into Goose Bay, Labrador, Canada and also allow us to undertake a re-interpretation of the Kf-1 parasequence set of the Cretaceous Last Chance Delta, a unit of the Ferron Sandstone near Emery, Utah, USA. We argue that the Last Chance delta likely possessed numerous distributaries with at least five orders of bifurcation.

Ligand activation of peroxisome proliferator-activated receptor-beta/delta inhibits cell proliferation in human HaCaT keratinocytes.

PubMed

Borland, Michael G; Foreman, Jennifer E; Girroir, Elizabeth E; Zolfaghari, Reza; Sharma, Arun K; Amin, Shantu; Gonzalez, Frank J; Ross, A Catharine; Peters, Jeffrey M

2008-11-01

Although there is strong evidence that ligand activation of peroxisome proliferator-activated receptor (PPAR)-beta/delta induces terminal differentiation and attenuates cell growth, some studies suggest that PPARbeta/delta actually enhances cell proliferation. For example, it was suggested recently that retinoic acid (RA) is a ligand for PPARbeta/delta and potentiates cell proliferation by activating PPARbeta/delta. The present study examined the effect of ligand activation of PPARbeta/delta on cell proliferation, cell cycle kinetics, and target gene expression in human HaCaT keratinocytes using two highly specific PPARbeta/delta ligands [4-[[[2-[3-fluoro-4-(trifluoromethyl)phenyl]-4-methyl-5-thiazolyl]methyl]thio]-2-methylphenoxy acetic acid (GW0742) and 2-methyl-4-((4-methyl-2-(4-trifluoromethylphenyl)-1,3-thiazol-5-yl)-methylsulfanyl)phenoxy-acetic acid (GW501516)] and RA. Both PPARbeta/delta ligands and RA inhibited cell proliferation of HaCaT keratinocytes. GW0742 and GW501516 increased expression of known PPARbeta/delta target genes, whereas RA did not; RA increased the expression of known retinoic acid receptor/retinoid X receptor target genes, whereas GW0742 did not affect these genes. GW0742, GW501516, and RA did not modulate the expression of 3-phosphoinositide-dependent protein kinase or alter protein kinase B phosphorylation. GW0742 and RA increased annexin V staining as quantitatively determined by flow cytometry. The effects of GW0742 and RA were also examined in wild-type and PPARbeta/delta-null primary mouse keratinocytes to determine the specific role of PPARbeta/delta in modulating cell growth. Although inhibition of keratinocyte proliferation by GW0742 was PPARbeta/delta-dependent, inhibition of cell proliferation by RA occurred in both genotypes. Results from these studies demonstrate that ligand activation of PPARbeta/delta inhibits keratinocyte proliferation through PPARbeta/delta-dependent mechanisms. In contrast, the observed inhibition of cell proliferation in mouse and human keratinocytes by RA is mediated by PPARbeta/delta-independent mechanisms and is inconsistent with the notion that RA potentiates cell proliferation by activating PPARbeta/delta.

Total enantioselectivity in the DNA binding of the dinuclear ruthenium(II) complex [[Ru(Me2bpy)2]2(mu-bpm)]4+ [bpm = 2,2'-bipyrimidine; Me2bpy = 4,4'-dimethyl-2,2'-bipyridine].

PubMed

Smith, Jayden A; Collins, J Grant; Patterson, Bradley T; Keene, F Richard

2004-05-07

The binding of the three stereoisomers (DeltaDelta-, LambdaLambda- and DeltaLambda-) of the dinuclear ruthenium(II) complex [[Ru(Me2bpy)2]2(mu-bpm)]4+ [Me2bpy = 4,4'-dimethyl-2,2'-bipyridine; bpm = 2,2'-bipyrimidine] to a tridecanucleotide containing a single adenine bulge has been studied by 1H NMR spectroscopy. The addition of the DeltaDelta-isomer to d(CCGAGAATTCCGG)2 induced significant chemical shift changes for the base and sugar resonances of the residues at the bulge site (G3A4G5/C11C10), whereas small shifts were observed upon addition of the enantiomeric LambdaLambda-form. NOESY spectra of the tridecanucleotide bound with the DeltaDelta-isomer revealed intermolecular NOE's between the metal complex and the nucleotide residues at the bulge site, while only weak NOE's were observed to terminal residues to the LambdaLambda-form. Competitive binding studies were performed where both enantiomers were simultaneously added to the tridecanucleotide, and for all ratios of the two stereoisomers the DeltaDelta-isomer remained selectively bound at the bulge site with the LambdaLambda-enantiomer localised at the terminal regions of the tridecanucleotide. The meso-diastereoisomer (DeltaLambda) was found to bind to the tridecanucleotide with characteristics intermediate between the DeltaDelta- and LambdaLambda-enantiomers of the rac form. Two distinct sets of metal complex resonances were observed, with one set having essentially the same shift as the free metal complex, whilst the other set of resonances exhibited significant shifts. The NOE data indicated that the meso-diastereoisomer does not bind as selectively as the DeltaDelta-isomer, with NOE's observed to a greater number of nucleotide residues compared to the DeltaDelta-form. This study provides a rare example of total enantioselectivity in the binding of an inert transition metal complex to DNA, produced by the shape recognition of both ruthenium(II) centres.

Using Science Skills to Understand Ecophysiology and Manage Resources

NASA Technical Reports Server (NTRS)

Bubenheim, David

2015-01-01

Presentation will be for a general audience and focus on plant science and ecosystem science in NASA. Examples from the projects involving the presenter will be used to illustrate. Specifically, the California Sacramento-San Joaquin River Delta project. This collaboration supports the goals of the Delta Plan in developing science-based, adaptive-management strategies. The mission is to improve reliability of water supply and restore a healthy Delta ecosystem while enhancing agriculture and recreation. NASA can contribute gap-filling science understanding of overall functions in the Delta ecosystem and assess and help develop management plans for specific issues. Airborne and satellite remote-sensing, ecosystem modeling, and biological studies provide underlying data needed by Delta stakeholders to assess and address water, ecosystem restoration, and environmental and economic impacts of potential actions in the Delta. The California Sacramento-San Joaquin River Delta, the hub for California's water supply, supports important ecosystem services for fisheries, supplies drinking water for millions, and distributes water from Northern California to agriculture and urban communities to the south; millions of people and businesses depend on Delta water. Decades of competing demands for Delta resources and year-to-year variability in precipitation has resulted in diminished overall health of the Delta. Declines in fish populations, threatened ecosystems, endangered species, invasive plants and animals, cuts in agricultural exports, and increased water conservation is the result. NASA and the USDA, building on previous collaborations, aide local Delta stakeholders in assessing and developing an invasive weed management approach. Aquatic, terrestrial, and riparian invasive weeds threaten aquatic and terrestrial ecosystem restoration efforts. Aquatic weeds are currently detrimental economically, environmentally, and sociologically in the Delta. They negatively impact the redistribution of water and disrupt the ecology of the Bay Delta food web. Filling current science gaps in the Delta Plan and improving management practices within the Delta are important to achieving the mission of improved Delta health. Methods developed can become routine land and water management tools. New high-resolution NASA sensor systems could be used to provide data packages specifically designed for water system The presenter will also speak about his personal experience and the role Delaware Valley College played in preparation for a professional career science.

Recent scientific advances and their implications for sand management near San Francisco, California: the influences of the ebb tidal delta

USGS Publications Warehouse

Hanes, Daniel M.; Barnard, Patrick L.; Dallas, Kate; Elias, Edwin; Erikson, Li H.; Eshleman, Jodi; Hansen, Jeff; Hsu, Tian Jian; Shi, Fengyan

2011-01-01

Recent research in the San Francisco, California, U.S.A., coastal region has identified the importance of the ebb tidal delta to coastal processes. A process-based numerical model is found to qualitatively reproduce the equilibrium size and shape of the delta. The ebb tidal delta itself has been contracting over the past century, and the numerical model is applied to investigate the sensitivity of the delta to changes in forcing conditions. The large ebb tidal delta has a strong influence upon regional coastal processes. The prominent bathymetry of the ebb tidal delta protects some of the coast from extreme storm waves, but the delta also focuses wave energy toward the central and southern portions of Ocean Beach. Wave focusing likely contributes to a chronic erosion problem at the southern end of Ocean Beach. The ebb tidal delta in combination with non-linear waves provides a potential cross-shore sediment transport pathway that probably supplies sediment to Ocean Beach.

Unraveling the Effect of Thermomechanical Treatment on the Dissolution of Delta Ferrite in Austenitic Stainless Steels

NASA Astrophysics Data System (ADS)

Rezayat, Mohammad; Mirzadeh, Hamed; Namdar, Masih; Parsa, Mohammad Habibi

2016-02-01

Considering the detrimental effects of delta ferrite stringers in austenitic stainless steels and the industrial considerations regarding energy consumption, investigating, and optimizing the kinetics of delta ferrite removal is of vital importance. In the current study, a model alloy prone to the formation of austenite/delta ferrite dual phase microstructure was subjected to thermomechanical treatment using the wedge rolling test aiming to dissolve delta ferrite. The effect of introducing lattice defects and occurrence of dynamic recrystallization (DRX) were investigated. It was revealed that pipe diffusion is responsible for delta ferrite removal during thermomechanical process, whereas when the DRX is dominant, the kinetics of delta ferrite dissolution tends toward that of the static homogenization treatment for delta ferrite removal that is based on the lattice diffusion of Cr and Ni in austenite. It was concluded that the optimum condition for dissolution of delta ferrite can be defined by the highest rolling temperature and strain in which DRX is not pronounced.

Statistics of Delta v magnitude for a trajectory correction maneuver containing deterministic and random components

NASA Technical Reports Server (NTRS)

Bollman, W. E.; Chadwick, C.

1982-01-01

A number of interplanetary missions now being planned involve placing deterministic maneuvers along the flight path to alter the trajectory. Lee and Boain (1973) examined the statistics of trajectory correction maneuver (TCM) magnitude with no deterministic ('bias') component. The Delta v vector magnitude statistics were generated for several values of random Delta v standard deviations using expansions in terms of infinite hypergeometric series. The present investigation uses a different technique (Monte Carlo simulation) to generate Delta v magnitude statistics for a wider selection of random Delta v standard deviations and also extends the analysis to the case of nonzero deterministic Delta v's. These Delta v magnitude statistics are plotted parametrically. The plots are useful in assisting the analyst in quickly answering questions about the statistics of Delta v magnitude for single TCM's consisting of both a deterministic and a random component. The plots provide quick insight into the nature of the Delta v magnitude distribution for the TCM.

Expression profiling of peroxisome proliferator-activated receptor-delta (PPAR-delta) in mouse tissues using tissue microarray.

PubMed

Higashiyama, Hiroyuki; Billin, Andrew N; Okamoto, Yuji; Kinoshita, Mine; Asano, Satoshi

2007-05-01

Peroxisome proliferator-activated receptor-delta (PPAR-delta) is known as a transcription factor involved in the regulation of fatty acid oxidation and mitochondrial biogenesis in several tissues, such as skeletal muscle, liver and adipose tissues. In this study, to elucidate systemic physiological functions of PPAR-delta, we examined the tissue distribution and localization of PPAR-delta in adult mouse tissues using tissue microarray (TMA)-based immunohistochemistry. PPAR-delta positive signals were observed on variety of tissues/cells in multiple systems including cardiovascular, urinary, respiratory, digestive, endocrine, nervous, hematopoietic, immune, musculoskeletal, sensory and reproductive organ systems. In these organs, PPAR-delta immunoreactivity was generally localized on the nucleus, although cytoplasmic localization was observed on several cell types including neurons in the nervous system and cells of the islet of Langerhans. These expression profiling data implicate various physiological roles of PPAR-delta in multiple organ systems. TMA-based immunohistochemistry enables to profile comprehensive protein localization and distribution in a high-throughput manner.

Changing Course: The Studio Misi-Ziibi Team_ New Misi-Ziibi Living Delta

NASA Astrophysics Data System (ADS)

Hoal, J.

2016-02-01

Acknowledging that the Mississippi River Delta will continue to evolve over the next 100 years, the new MISI-ZIIBI LIVING DELTA for the 22nd century - a healthy, productive and resilient delta - relies on a synergistic and leveraged combination of delta building, the working delta, and delta living. This new Delta will be more sustainable and smaller in area, but have faster vertical accretion rates than earlier deltas, which keeps pace with current and future rates of global sea-level rise. The vision for the new Delta will be achieved through ECO 3D [dredge + dump, dredge-siphon, divert] - in which the bounded Mississippi River will be fragmented into a network of constructed distributaries, using sediment diversions, in order to feed the wetlands with the necessary sediment for delta building. Although the diversions will be constructed and managed, the delta formation in the receiving basins is self-organizing and naturally formed. In addition, we propose to shorten the Mississippi River and construct a new navigation entry point further upstream with a new distributary node near West Point à la Hache. The realigned and shortened river provides more efficient methods to use the sediment loads and increase safety and navigation reliability, and lower flood levels along the Mississippi River in this area. Ensuring that the navigation and marine economy continues to expand the river will be dredged to 50ft deep, the existing ports and Port Fourchon expanded, existing navigable inland water bodies maintained, and a new port constructed in the new Bird's Foot. We propose retreat from the southern rim of the existing Delta in order to assure long-term sustainability of the regions with the highest population density and economic productivity. The concept of DELTA LIVING is about embracing the ideology and cultural aspect of communities by enabling a means to continue to live with the Delta in new ways, and accommodating a regional growth strategy of safe, strong, and distinctive communities. Overall, the MISI-ZIIBI LIVING DELTA uses constructed and natural ecological landscapes to provide for both the safe and sustainable inhabitance of the Delta region while encouraging a vibrant, growing and sustainable economy that thrives in light of unpredictable and long-term changes.

Geomorphology of the Chippewa River delta of Glacial Lake Saginaw, central Lower Michigan, USA

NASA Astrophysics Data System (ADS)

Connallon, Christopher B.; Schaetzl, Randall J.

2017-08-01

We introduce, characterize, and interpret the geomorphic history of a relict, Pleistocene-aged delta of the Chippewa River in central Lower Michigan. The broad, sandy Chippewa delta developed into various stages of Glacial Lake Saginaw, between ca. ≈ 17 and 15 ka·BP (calibrated ages). Although the delta was first identified in 1955 on a statewide glacial geology map, neither its extent nor its Pleistocene history had been previously determined. The delta is typically forested, owing to its wet, sandy soils, which stand out against the agricultural fields of the surrounding, loamy lake plain sediments. The delta heads near the city of Mt Pleasant and extends eastward onto the Saginaw Lowlands, i.e., the plain of Glacial Lake Saginaw. Data from 3285 water well logs, 180 hand augered sites, and 185 points randomly located in a GIS on two-storied (sand over loam) soils were used to determine the extent, textural properties, and thickness of the delta. The delta is ≈ 18 km wide and ≈ 38 km long and is sandy throughout. Deltaic sediments from neighboring rivers that also drained into Glacial Lake Saginaw merge with the lower Chippewa delta, obscuring its boundary there. The delta is thickest near the delta's head and in the center, but thins to 1-2 m or less on its eastern margins. Mean thicknesses are 2.3-2.9 m, suggestive of a thin sediment body, frequently impacted by the waves and fluctuating waters of the lakes. Although beach ridges are only weakly expressed across the delta because of the sandy sediment, the coarsest parts of the delta are generally coincident with some of these inferred former shorezones and have a broad, incised channel that formed while lake levels were low. The thick upper delta generally lies above the relict shorelines of Glacial Lakes Saginaw and Arkona (≈ 17.1 to ≈ 16 ka·BP), whereas most of the thin, distal delta is associated with Glacial Lake Warren (≈ 15 ka·BP). Together, these data suggest that the Chippewa delta formed and prograded as lake levels in the Saginaw Lowlands alternated and episodically fell. The result is a delta that is comparatively thin, expansive, and sandy. In some places, these sands have subsequently been reworked into fields of small parabolic dunes.

Losing ground in mega-deltas: basin-scale response to existential threats to the Mekong Delta

NASA Astrophysics Data System (ADS)

Arias, M. E.; Kondolf, G. M.; Schmitt, R. J. P.; Carling, P. A.; Darby, S. E.; Bizzi, S.; Castelletti, A.; Cochrane, T. A.; Gibson, S.; Kummu, M.; Oeurng, C.; Rubin, Z.; Wild, T. B.

2017-12-01

The Mekong Delta is, in terms of the number of livelihoods it supports, its economic importance, and in its vulnerability to climate change and sinking lands, one of the world's critically threatened mega-deltas. Livelihoods depend on the mere existence of the delta, but also on ecosystem services provided by the delta's drainage basin spanning 795,000 km2 in six abutting countries. These ecosystem services include delivery of sand required to build delta land in the face of rising sea-levels and sediment bound nutrients, provision of spawning habitat for fish that are ultimately harvested in the delta, and hydrologic regulation driving the delta's unique flood-pulse regime. However, while the delta is mainly located in Vietnam, the basin of the Mekong River is shared among China, Myanmar, Laos, Thailand, Cambodia, and Vietnam. In the context of the region's dynamic growth, individual countries are pushing their own development agendas, which include extensive dam building, in-channel sand mining, construction of dykes and canals, and groundwater pumping, all of which contribute to subsidence and erosion of the Delta. Our synthesis of recent research indicates that most of the Mekong's delta land will likely fall below sea-level by 2100 as result of these drivers, exacerbating the impacts of global climatic changes. In this context, local infrastructural projects and changes in land- and water-management may temporarily mitigate some negative effects, but do not address the existential threat to the delta as a whole. To prevent, or at least substantially postpone, the drowning of the Mekong Delta requires identification of the key drivers and immediate concerted management actions on the basin-scale to change the trajectory of subsidence and sediment deficit. A specific challenge is to find the institutional arrangements in this transnational context that could support the needed management changes and equitably distribute costs and impacts. The Mekong Delta is sufficiently well-studied that we can make projections with some confidence (albeit with significant uncertainty), but its problems are not unique. Rather the Mekong Delta is an example for the need to manage critically vulnerable mega deltas on multiple scales with a focus on strategic management decisions on whole basin scales.

Storm-time changes of geomagnetic field at MAGSAT altitudes (325-550 Km) and their comparison with changes at ground locations

NASA Technical Reports Server (NTRS)

Parada, N. D. J. (Principal Investigator); Kane, R. P.; Trivedi, N. B.

1983-01-01

The values of H, X, Y, Z at MAGSAT altitudes were first expressed as residuals delta H, delta X, delta Y, delta Z after subtracting the model HMD, XMD, YMD, ZMC. The storm-time variations of H showed that delta H (Dusk) was larger (negative) than delta H (Dawn) and occurred earlier, indicating a sort of hysteresis effect. Effects at MAGSAT altitudes were roughly the same (10% accuracy) as at ground, indicating that these effects were mostly of magnetospheric origin. The delta Y component also showed large storm-time changes. The latitudinal distribution of storm-time delta H showed north-south asymmetries varying in nature as the storm progressed. It seems that the central plane of the storm-time magnetospheric ring current undergoes latitudinal meanderings during the course of the storm.

Classification of Martian deltas

NASA Technical Reports Server (NTRS)

Dehon, R. A.

1993-01-01

Water-borne sediments in streams are deposited, upon eventual cessation of flow, either as deltas or as alluvial fans or plains. Deltas and alluvial fans share a common characteristic; both may be described as deposition Al plains at the mouth of a river or stream. A delta is formed where a stream or river deposits its sedimentary load into a standing body of water such as an ocean or lake. An alluvial fan is produced where a stream loses capacity by a greatly decreased gradient. A delta has subaerial and subaqueous components, but an alluvial fan is entirely subaerial. In terrestrial conditions, deltas and alluvial fans are reasonably distinct landforms. The juxtaposition of concomitant features composition and internal structure are sufficiently explicit as to avoid any confusion regarding their proper identification on Mars, the recognition of deltas and their distinction from alluvial fans is made difficult by low resolution imaging. Further, although it may be demonstrated that standing bodies of water existed on the surface of Mars, many of these bodies may have existed for extremely short periods of time (a few days to months); hence, distinctive shoreline features were not developed. Thus, in an attempt to derive a Martian classification of deltas, the inclusion of wholly subaerial deposits may be unavoidable. A simple, broad, morphological classification of Martian deltas, primarily on planimetric shape, includes digitate deltas, fan-shaped deltas, and re-entrant deltas. A fourth, somewhat problematical class includes featureless plains at the end of many valley systems.

Shifts of environmental and phytoplankton variables in a regulated river: A spatial-driven analysis.

PubMed

Sabater-Liesa, Laia; Ginebreda, Antoni; Barceló, Damià

2018-06-18

The longitudinal structure of the environmental and phytoplankton variables was investigated in the Ebro River (NE Spain), which is heavily affected by water abstraction and regulation. A first exploration indicated that the phytoplankton community did not resist the impact of reservoirs and barely recovered downstream of them. The spatial analysis showed that the responses of the phytoplankton and environmental variables were not uniform. The two set of variables revealed spatial variability discontinuities and river fragmentation upstream and downstream from the reservoirs. Reservoirs caused the replacement of spatially heterogeneous habitats by homogeneous spatially distributed water bodies, these new environmental conditions downstream benefiting the opportunist and cosmopolitan algal taxa. The application of a spatial auto-regression model to algal biomass (chlorophyll-a) permitted to capture the relevance and contribution of extra-local influences in the river ecosystem. Copyright © 2018 The Authors. Published by Elsevier B.V. All rights reserved.

Future climate scenarios and rainfall--runoff modelling in the Upper Gallego catchment (Spain).

PubMed

Bürger, C M; Kolditz, O; Fowler, H J; Blenkinsop, S

2007-08-01

Global climate change may have large impacts on water supplies, drought or flood frequencies and magnitudes in local and regional hydrologic systems. Water authorities therefore rely on computer models for quantitative impact prediction. In this study we present kernel-based learning machine river flow models for the Upper Gallego catchment of the Ebro basin. Different learning machines were calibrated using daily gauge data. The models posed two major challenges: (1) estimation of the rainfall-runoff transfer function from the available time series is complicated by anthropogenic regulation and mountainous terrain and (2) the river flow model is weak when only climate data are used, but additional antecedent flow data seemed to lead to delayed peak flow estimation. These types of models, together with the presented downscaled climate scenarios, can be used for climate change impact assessment in the Gallego, which is important for the future management of the system.

Evaluation of EREP techniques for geological mapping. [southern Pyrenees and Ebro basin in Spain

NASA Technical Reports Server (NTRS)

Vandermeermohr, H. E. C.; Srivastava, G. S. (Principal Investigator)

1975-01-01

The author has identified the following significant results. Skylab photographs may be successfully utilized for preparing a reconnaissance geological map in the areas where no maps or semi-detailed maps exist. Large coverage of area and regional perspective from Skylab photographs can help better coordination in regional mapping. It is possible to delineate major structural trends and other features like mega-lineaments, geofractures, and faults, which have evaded their detection by conventional methods. The photointerpretability is better in areas dominated by sedimentary rocks. Rock units of smaller extent and having poor geomorphic expressions are difficult to map. Demarcation of quaternary river alluvium can be made with better precision and ease with the Skylab photographs. Stereoscopic viewing greatly helps in interpretation of area structures. Skylab photographs are not good for preparing geological maps larger than 1:270,000 scale.

Hepatic delta 6-desaturase activity in lean and genetically obese ob/ob mice.

PubMed Central

Hughes, S; York, D A

1985-01-01

Hepatic delta 6-desaturase activity is primarily located in the mitochondrial fraction in mice. Both delta 6- and delta 5-desaturase activities are increased in the liver of young (6-week-old) obese mice. The increase in hepatic delta 6-desaturase activity in obese mice does not occur until weaning. Neither restriction of food intake nor hyperinsulinaemia normalize hepatic delta 6-desaturase activity of obese mice. Both cold acclimation and tri-iodothyronine (30 micrograms/day per kg) decreased hepatic delta 6-desaturase activity of obese mice to levels observed in lean mice, whereas the increase in activity in obese mice was still maintained after the induction of hypothyroidism. PMID:3977836

21 CFR 184.1318 - Glucono delta-lactone.

Code of Federal Regulations, 2011 CFR

2011-04-01

... 21 Food and Drugs 3 2011-04-01 2011-04-01 false Glucono delta-lactone. 184.1318 Section 184.1318... Listing of Specific Substances Affirmed as GRAS § 184.1318 Glucono delta-lactone. (a) Glucono delta-lactone (C6H10O6, CAS Reg. No. 90-80-2), also called D-gluconic acid delta-lactone or D-glucono-1,5...

21 CFR 184.1318 - Glucono delta-lactone.

Code of Federal Regulations, 2010 CFR

2010-04-01

... 21 Food and Drugs 3 2010-04-01 2009-04-01 true Glucono delta-lactone. 184.1318 Section 184.1318... Listing of Specific Substances Affirmed as GRAS § 184.1318 Glucono delta-lactone. (a) Glucono delta-lactone (C6H10O6, CAS Reg. No. 90-80-2), also called D-gluconic acid delta-lactone or D-glucono-1,5...

Experimental river delta size set by multiple floods and backwater hydrodynamics.

PubMed

Ganti, Vamsi; Chadwick, Austin J; Hassenruck-Gudipati, Hima J; Fuller, Brian M; Lamb, Michael P

2016-05-01

River deltas worldwide are currently under threat of drowning and destruction by sea-level rise, subsidence, and oceanic storms, highlighting the need to quantify their growth processes. Deltas are built through construction of sediment lobes, and emerging theories suggest that the size of delta lobes scales with backwater hydrodynamics, but these ideas are difficult to test on natural deltas that evolve slowly. We show results of the first laboratory delta built through successive deposition of lobes that maintain a constant size. We show that the characteristic size of delta lobes emerges because of a preferential avulsion node-the location where the river course periodically and abruptly shifts-that remains fixed spatially relative to the prograding shoreline. The preferential avulsion node in our experiments is a consequence of multiple river floods and Froude-subcritical flows that produce persistent nonuniform flows and a peak in net channel deposition within the backwater zone of the coastal river. In contrast, experimental deltas without multiple floods produce flows with uniform velocities and delta lobes that lack a characteristic size. Results have broad applications to sustainable management of deltas and for decoding their stratigraphic record on Earth and Mars.

Experimental river delta size set by multiple floods and backwater hydrodynamics

PubMed Central

Ganti, Vamsi; Chadwick, Austin J.; Hassenruck-Gudipati, Hima J.; Fuller, Brian M.; Lamb, Michael P.

2016-01-01

River deltas worldwide are currently under threat of drowning and destruction by sea-level rise, subsidence, and oceanic storms, highlighting the need to quantify their growth processes. Deltas are built through construction of sediment lobes, and emerging theories suggest that the size of delta lobes scales with backwater hydrodynamics, but these ideas are difficult to test on natural deltas that evolve slowly. We show results of the first laboratory delta built through successive deposition of lobes that maintain a constant size. We show that the characteristic size of delta lobes emerges because of a preferential avulsion node—the location where the river course periodically and abruptly shifts—that remains fixed spatially relative to the prograding shoreline. The preferential avulsion node in our experiments is a consequence of multiple river floods and Froude-subcritical flows that produce persistent nonuniform flows and a peak in net channel deposition within the backwater zone of the coastal river. In contrast, experimental deltas without multiple floods produce flows with uniform velocities and delta lobes that lack a characteristic size. Results have broad applications to sustainable management of deltas and for decoding their stratigraphic record on Earth and Mars. PMID:27386534

Selfish prion of Rnq1 mutant in yeast.

PubMed

Kurahashi, Hiroshi; Shibata, Shoichiro; Ishiwata, Masao; Nakamura, Yoshikazu

2009-05-01

[PIN(+)] is a prion form of Rnq1 in Saccharomyces cerevisiae and is necessary for the de novo induction of a second prion, [PSI(+)]. We previously isolated a truncated form of Rnq1, named Rnq1Delta100, as a [PSI(+)]-eliminating factor in S. cerevisiae. Rnq1Delta100 deletes the N-terminal non-prion domain of Rnq1, and eliminates [PSI(+)] in [PIN(+)] yeast. Here we found that [PIN(+)] is transmissible to Rnq1Delta100 in the absence of full-length Rnq1, forming a novel prion variant [RNQ1Delta100(+)]. [RNQ1Delta100(+)] has similar [PIN(+)] properties as it stimulates the de novo induction of [PSI(+)] and is eliminated by the null hsp104Delta mutation, but not by Hsp104 overproduction. In contrast, [RNQ1Delta100(+)] inherits the inhibitory activity and hampers the maintenance of [PSI(+)] though less efficiently than [PIN(+)] made of Rnq1-Rnq1Delta100 co-aggregates. Interestingly, [RNQ1Delta100(+)] prion was eliminated by de novo [PSI(+)] induction. Thus, the [RNQ1Delta100(+)] prion demonstrates selfish activity to eliminate a heterologous prion in S. cerevisiae, showing the first instance of a selfish prion variant in living organisms.

Rat PPAR delta contains a CGG triplet repeat and is prominently expressed in the thalamic nuclei.

PubMed

Xing, G; Zhang, L; Zhang, L; Heynen, T; Yoshikawa, T; Smith, M; Weiss, S; Detera-Wadleigh, S

1995-12-26

We have isolated a new rat sequence containing motifs of a nuclear hormone receptor from a brain cDNA library. The deduced amino acid sequence encoded by the cDNA clone showed a strong homology to the human NUCI and the mouse peroxisome proliferator activated receptor delta (PPAR delta). We therefore refer to this new clone as rat PPAR delta (rPPAR delta). The new feature of rPPAR delta is a 14 CGG triplet repeat on the 5' untranslated region, not previously reported in either NUCI or mPPAR delta. We found that rPPAR delta was expressed as a 3.5-kb transcript which showed a wide distribution in adult rat tissues. Abundant expression was detected in brain, heart, skeletal muscle, kidney and lung. Weaker expression was noted in the liver, spleen and testis. To determine the specific brain localization of rPPAR delta we performed in situ hybridization analysis. Prominent expression was observed in the thalamus, particularly in the posterior part of the ventral medial nucleus, a site responsive to pain and cold stress. These results raise the possibility that PPAR delta might play a role in modulating response to thermal and pain sensations.

[Testing the pharmacological activity of some synthetic cannabinoids in mice (author's transl)].

PubMed

Ganz, A J; Waser, P G

1980-01-01

A series of synthetic cannabinoids were tested in mice for analgesic, anticonvulsant, sedative and reserpine antagonistic properties as well as for influence on body temperature and on motor coordination and compared with the natural delta 9-tetrahydrocannabinol (delta 9-THC), delta 8-tetrahydrocannabinol (delta 8-THC) and cannabidiol (CBD). All cannabinoids were injected s.c. or i.p. in mice as solutions in olive oil. The synthetic cannabinoids, with the exception of the lipophilic ones, were less active than the natural delta 9-THC. 1',1'-dimethyl-delta 8-tetrahydrocannabinol (DM-delta 8-THC) has an analgesic ED 50 of 16 mg/kg s.c. (writhing test) and is three times more active than delta 9-THC, but also eight times less active than morphine. The lipophilic derivatives of delta 8-THC prolonged pentobarbitone narcosis and diminished locomotor activity in mice. Anticonvulsant activities could never be detected; all cannabinoids slightly diminished body temperature and antagonized weakly the hypothermia induced by reserpine. The trained capacity of remaining on the rotating rod was severely shortened for a long time after application of all cannabinoids but mainly by the lipophilic ones. The influence of derivation on the activity of delta 9-THC is discussed.

[The significance of the interaural latency difference of VEMP].

PubMed

Wu, Ziming; Zhang, Suzhen; Ji, Fei; Zhou, Na; Guo, Weiwei; Yang, Weiyan; Han, Dongyi

2005-05-01

To investigate the significance of the interaural latency (IAL) difference of the latency of VEMP and to raise the sensitivity of the test. Vestibular evoked myogenic potentials (VEMP) were tested in 20 healthy subjects; 13 patients with acoustic neuromaor cerebellopontile angle occupying lesions and 1 patient with multiple sclerosis. IAL differences of the wave p13,n23 and p13-n23 (abbreviatd as /delta p13/, /delta n23/ and /delta p13-n23/, respectively) were analysed to determine the normal range and the upper limit of the norm data. Four illustrative cases with the abnormality of the IAL difference were given as examples. The upper limit of the IAL of /delta p13/ was 1.13 ms; that of the /delta n23/ was 1.38 ms and that of /delta p13-n23/ was 1.54 ms. The /p13-n23/ latency between the right and left side had no significant difference (P > 0.05). /delta p13/, /delta n23/ and /delta p13-n23/, especially /delta p13/ of VEMP can suggest abnormality in the neural pathway and it may be applicable in practice.

Signature of the Fragmentation of a Color Flux Tube

DOE PAGES

Wong, Cheuk-Yin

2015-10-07

The production of quark-antiquark pairs along a color flux tube precedes the fragmentation of the tube. Because of the local conservation of momentum and charge, the production of amore » $q$-$$\\bar q$$ pair will lead to correlations of adjacently produced mesons (mostly pions). Adjacently produced pions however can be signalled by the their rapidity difference $$\\Delta y$$ falling within the window of $$|\\Delta y | < 1/(dN_\\pi/dy)$$, on account of the space-time-rapidity ordering of produced pions in a flux tube fragmentation. Therefore, the local conservation of momentum will lead to a suppression of azimuthal two-pion correlation $$dN/(d\\Delta \\phi\\, d\\Delta y)$$ on the near side at $$(\\Delta \\phi, \\Delta y) \\sim 0$$, but an enhanced azimuthal correlation on the back-to-back, away side at $$(\\Delta \\phi$$$\\sim$$$ \\pi,\\Delta y$$$\\sim$$0). Similarly, in a flux tube fragmentation, the local conservation of charge will forbid the production of like charge pions within $$|\\Delta y | < 1/(dN_\\pi/dy)$$, but there is no such prohibition for $$|\\Delta y| >1/(dN_\\pi/dy)$$. These properties may be used as the signature for the fragmentation of a color flux tube.« less

The effect of interference on delta modulation encoded video signals

NASA Technical Reports Server (NTRS)

Schilling, D. L.

1979-01-01

The results of a study on the use of the delta modulator as a digital encoder of television signals are presented. The computer simulation was studied of different delta modulators in order to find a satisfactory delta modulator. After finding a suitable delta modulator algorithm via computer simulation, the results are analyzed and then implemented in hardware to study the ability to encode real time motion pictures from an NTSC format television camera. The effects were investigated of channel errors on the delta modulated video signal and several error correction algorithms were tested via computer simulation. A very high speed delta modulator was built (out of ECL logic), incorporating the most promising of the correction schemes, so that it could be tested on real time motion pictures. The final area of investigation concerned itself with finding delta modulators which could achieve significant bandwidth reduction without regard to complexity or speed. The first such scheme to be investigated was a real time frame to frame encoding scheme which required the assembly of fourteen, 131,000 bit long shift registers as well as a high speed delta modulator. The other schemes involved two dimensional delta modulator algorithms.

The Potential of Time Series Based Earth Observation for the Monitoring of Large River Deltas

NASA Astrophysics Data System (ADS)

Kuenzer, C.; Leinenkugel, P.; Huth, J.; Ottinger, M.; Renaud, F.; Foufoula-Georgiou, E.; Vo Khac, T.; Trinh Thi, L.; Dech, S.; Koch, P.; Le Tissier, M.

2015-12-01

Although river deltas only contribute 5% to the overall land surface, nearly six hundred million people live in these complex social-ecological environments, which combine a variety of appealing locational advantages. In many countries deltas provide the major national contribution to agricultural and industrial production. At the same time these already very dynamic environments are exposed to a variety of threats, including the disturbance and replacement of valuable ecosystems, increasing water, soil, and air pollution, human induced land subsidence, sea level rise, as well upstream developments impacting water and sediment supplies. A constant monitoring of delta systems is thus of utmost relevance for understanding past and current land surface change and anticipating possible future developments. We present the potential of Earth Observation based analyses and derived novel information products that can play a key role in this context. Along with the current trend of opening up numerous satellite data archives go increasing capabilities to explore big data. Whereas in past decades remote sensing data were analysed based on the spectral-reflectance-defined 'finger print' of individual surfaces, we mainly exploit the 'temporal fingerprints' of our land surface in novel pathways of data analyses at differing spatial-, and temporally-dense scales. Following our results on an Earth Observation based characterization of large deltas globally, we present in depth results from the Mekong Delta in Vietnam, the Yellow River Delta in China, the Niger Delta in Nigeria, as well as additional deltas, focussing on the assessment of river delta flood and inundation dynamics, river delta coastline dynamics, delta morphology dynamics including the quantification of erosion and accretion processes, river delta land use change and trends, as well as the monitoring of compliance to environmental regulations.

Cognitive and subjective dose-response effects of acute oral Delta 9-tetrahydrocannabinol (THC) in infrequent cannabis users.

PubMed

Curran, H Valerie; Brignell, Catherine; Fletcher, Sally; Middleton, Paul; Henry, John

2002-10-01

Although some aspects of memory functions are known to be acutely impaired by delta(9)-tetrahydrocannabinol (delta(9)-THC; the main active constituent of marijuana), effects on other aspects of memory are not known and the time course of functional impairments is unclear. The present study aimed to detail the acute and residual cognitive effects of delta(9)-THC in infrequent cannabis users. A balanced, double-blind cross-over design was used to compare the effects of 7.5 mg and 15 mg delta(9)-THC with matched placebo in 15 male volunteers. Participants were assessed pre and 1, 2, 4, 6, 8, 24 and 48 h post-drug. Delta(9)-THC 15 mg impaired performance on two explicit memory tasks at the time of peak plasma concentration (2 h post-drug). At the same time point, performance on an implicit memory task was preserved intact. The higher dose of delta(9)-THC resulted in no learning whatsoever occurring over a three-trial selective reminding task at 2 h. Working memory was generally unaffected by delta(9)-THC. In several tasks, delta(9)-THC increased both speed and error rates, reflecting "riskier" speed-accuracy trade-offs. Subjective effects were also most marked at 2 h but often persisted longer, with participants rating themselves as "stoned" for 8 h. Participants experienced a strong drug effect, liked this effect and, until 4 h, wanted more oral delta(9)-THC. No effects of delta(9)-THC were found 24 or 48 h following ingestion indicating that the residual effects of oral delta(9)-THC are minimal. These data demonstrate that oral delta(9)-THC impairs episodic memory and learning in a dose-dependent manner whilst sparing perceptual priming and working memory.

Color accuracy and reproducibility in whole slide imaging scanners

PubMed Central

Shrestha, Prarthana; Hulsken, Bas

2014-01-01

Abstract We propose a workflow for color reproduction in whole slide imaging (WSI) scanners, such that the colors in the scanned images match to the actual slide color and the inter-scanner variation is minimum. We describe a new method of preparation and verification of the color phantom slide, consisting of a standard IT8-target transmissive film, which is used in color calibrating and profiling the WSI scanner. We explore several International Color Consortium (ICC) compliant techniques in color calibration/profiling and rendering intents for translating the scanner specific colors to the standard display (sRGB) color space. Based on the quality of the color reproduction in histopathology slides, we propose the matrix-based calibration/profiling and absolute colorimetric rendering approach. The main advantage of the proposed workflow is that it is compliant to the ICC standard, applicable to color management systems in different platforms, and involves no external color measurement devices. We quantify color difference using the CIE-DeltaE2000 metric, where DeltaE values below 1 are considered imperceptible. Our evaluation on 14 phantom slides, manufactured according to the proposed method, shows an average inter-slide color difference below 1 DeltaE. The proposed workflow is implemented and evaluated in 35 WSI scanners developed at Philips, called the Ultra Fast Scanners (UFS). The color accuracy, measured as DeltaE between the scanner reproduced colors and the reference colorimetric values of the phantom patches, is improved on average to 3.5 DeltaE in calibrated scanners from 10 DeltaE in uncalibrated scanners. The average inter-scanner color difference is found to be 1.2 DeltaE. The improvement in color performance upon using the proposed method is apparent with the visual color quality of the tissue scans. PMID:26158041

Comparison of receptor mechanisms and efficacy requirements for delta-agonist-induced convulsive activity and antinociception in mice.

PubMed

Broom, Daniel C; Nitsche, Joshua F; Pintar, John E; Rice, Kenner C; Woods, James H; Traynor, John R

2002-11-01

Delta-opioid receptor-selective agonists produce antinociception and convulsions in several species, including mice. This article examines two hypotheses in mice: 1) that antinociception and convulsive activity are mediated through the same type of delta-receptor and 2) that greater delta-agonist efficacy is required for antinociception than for convulsive activity. Delta-mediated antinociception was evaluated in the acetic acid-induced abdominal constriction assay, which involves a low-intensity noxious stimulus; convulsive activity was indicated as a mild tonic-clonic convulsive episode followed by a period of catalepsy. In delta-opioid receptor knockout mice [DOR-1(-/-)], the nonpeptidic delta-agonists (+/-)-4-[(R*)-[(2S*,5R*)-2,5-dimethyl-4-(2-propenyl)-1- piperazinyl]-(3-hydroxyphenyl)methyl]-N,N-diethylbenzamide hydrochloride (BW373U86) and (+)-4-[(R)-[(2S,5R)-2,5-dimethyl-4-(2-propenyl)-1-piperazinyl]-(3-methoxyphenyl)methyl]-N, N-diethylbenzamide (SNC80) failed to produce convulsive behavior demonstrating the absolute involvement of DOR-1 in this effect. In NIH Swiss mice expressing delta-opioid receptors, BW373U86 produced both antinociception and convulsive activity. These effects were antagonized by the putative delta(1)-receptor-selective antagonist 7-benzylidenenaltrexone and the putative delta(2)-receptor-selective antagonist naltriben. Tolerance developed to both the convulsive and antinociceptive effects of BW373U86. Tolerance to the convulsive, but not the antinociceptive, effects of BW373U86 was largely prevented when the antagonist naltrindole was given 20 min after each dose of the agonist in a 3-day treatment paradigm. The convulsive action of BW373U86 was also less sensitive than the antinociceptive action to treatment with the irreversible delta-antagonist naltrindole isothiocyanate. Collectively, these data suggest that the convulsive and antinociceptive activities of delta-agonists are mediated through the same receptor but that the receptor reserve for delta-mediated convulsive activity is greater than for delta-mediated antinociceptive activity.

In vivo neurochemical evidence that delta1-, delta2- and mu2-opioid receptors, but not mu1-opioid receptors, inhibit acetylcholine efflux in the nucleus accumbens of freely moving rats.

PubMed

Kiguchi, Yuri; Aono, Yuri; Watanabe, Yuriko; Yamamoto-Nemoto, Seiko; Shimizu, Kunihiko; Shimizu, Takehiko; Kosuge, Yasuhiro; Waddington, John L; Ishige, Kumiko; Ito, Yoshihisa; Saigusa, Tadashi

2016-10-15

Cholinergic neurons in the nucleus accumbens express delta- and mu-opioid receptors that are thought to inhibit neural activity. Delta- and mu-opioid receptors are divided into delta1- and delta2-opioid receptors and mu1- and mu2-opioid receptors, respectively. We analysed the roles of delta- and mu-opioid receptor subtypes in regulating accumbal acetylcholine efflux of freely moving rats using in vivo microdialysis. Other than naloxonazine, given intraperitoneally, delta- and mu-opioid receptor ligands were administered intracerebrally through the dialysis probe. Doses of these compounds indicate total amount (mol) over an infusion time of 30-60min. To monitor basal acetylcholine, a low concentration of physostigmine (50nM) was added to the perfusate. The delta1-opioid receptor agonist DPDPE (3 and 300pmol) and delta2-opioid receptor agonist deltorphin II (3 and 30pmol) decreased accumbal acetylcholine in a dose-related manner. DPDPE (300pmol)- and deltorphin II (3pmol)-induced reductions in acetylcholine were each inhibited by the delta1-opioid receptor antagonist BNTX (0.3pmol) and delta2-opioid receptor antagonist naltriben (15pmol), respectively. The mu-opioid receptor agonists endomorphin-1 and endomorphin-2 (6 and 30nmol) decreased acetylcholine in a dose-related manner. Endomorphin-1- and endomorphin-2 (30nmol)-induced reductions in acetylcholine were prevented by the mu-opioid receptor antagonist CTOP (3nmol). The mu1-opioid receptor antagonist naloxonazine (15mg/kg ip), which inhibits endomorphin-1 (15nmol)-induced accumbal dopamine efflux, did not alter endomorphin-1- or endomorphin-2 (30nmol)-induced reductions in acetylcholine efflux. This study provides in vivo evidence for delta1-, delta2- and mu2-opioid receptors, but not mu1-opioid receptors, that inhibit accumbal cholinergic neural activity. Copyright © 2016 Elsevier B.V. All rights reserved.

The wave-tide-river delta classification revisited: Introducing the effects of Humans on delta equilibriu

NASA Astrophysics Data System (ADS)

Besset, M.; Anthony, E.; Sabatier, F.

2016-12-01

The influence of physical processes on river deltas has long been identified, mainly on the basis of delta morphology. A cuspate delta is considered as wave-dominated, a delta with finger-like extensions is characterized as river-dominated, and a delta with estuarine re-entrants is considered tide-dominated (Galloway, 1975). The need for a more quantitative classification is increasingly recognized, and is achievable through quantified combinations, a good example being Syvitski and Saito (2007) wherein the joint influence of marine power - wave and tides - is compared to that of river influence. This need is further justified as deltas become more and more vulnerable. Going forward from the Syvitski and Saito (2007) approach, we confront, from a large database on 60 river deltas, the maximum potential power of waves and the tidal range (both representing marine power), and the specific stream power and river sediment supply reflecting an increasingly human-impacted river influence. The results show that 45 deltas (75%) have levels of marine power that are significantly higher than those of specific stream power. Five deltas have sufficient stream power to counterbalance marine power but a present sediment supply inadequate for them to be statistically considered as river-dominated. Six others have a sufficient sediment supply but a specific stream power that is not high enough for them to be statistically river-dominated. A major manifestation of the interplay of these parameters is accelerated delta erosion worldwide, shifting the balance towards marine power domination. Deltas currently eroding are mainly influenced by marine power (93%), and small deltas (< 300 km2 of deltaic protuberance) are the most vulnerable (82%). These high levels of erosion domination, compounded by accelerated subsidence, are related to human-induced sediment supply depletion and changes in water discharge in the face of the sediment-dispersive capacity of waves and currents.

Thermodynamics of the clusterization process of cis isomers of unsaturated fatty acids at the air/water interface.

PubMed

Vysotsky, Yu B; Belyaeva, E A; Fainerman, V B; Vollhardt, D; Aksenenko, E V; Miller, R

2009-04-02

In the framework of the semiempirical PM3 method, the thermodynamic parameters of cis isomers of unsaturated carboxylic acids at the air/water interface are studied. The model systems used are unsaturated cis fatty acid of the composition Delta = 12-15 and omega = 6-11, where Delta and omega refer to the number of carbon atoms between the functional group and double bond, and that between the double bond and methyl group, respectively. For dimers, trimers, and tetramers of the four acid series, the thermodynamic parameters of clusterization are calculated. It is shown that the position of the double bond does not significantly affect the values of thermodynamic parameters of formation and clusterization of carboxylic acids for equal chain lengths (n = Delta + omega). The calculated results show that for cis unsaturated fatty acid with odd Delta values the spontaneous clusterization threshold corresponds to n = 17-18 carbon atoms in the alkyl chain, while for monounsaturated acids with even Delta values this threshold corresponds to n = 18-19 carbon atoms in the alkyl chain. These differences in the clusterization threshold between the acids with even and odd Delta values are attributed to the formation of additional intermolecular hydrogen bonds between the ketonic oxygen atom of one monomer and the hydrogen atom linked to the alpha-carbon atom of the second monomer for the acids with odd Delta values or between the hydroxyl oxygen atom of one monomer and hydrogen atom linked to the alpha-carbon atom of the second monomer for the acids with even Delta values. The results obtained in the study agree satisfactorily with our experimental data for cis unsaturated nervonic (Delta15, omega9) and erucic acids (Delta13, omega9), and published data for some fatty acids, namely cis-16-heptadecenoic (Delta16, omega1), cis-9-hexadecenoic (Delta7, omega9), cis-11-eicosenoic (Delta11, omega9) and cis-9-octadecenoic acid (Delta9, omega9).

Interface trap and oxide charge generation under negative bias temperature instability of p-channel metal-oxide-semiconductor field-effect transistors with ultrathin plasma-nitrided SiON gate dielectrics

DOE Office of Scientific and Technical Information (OSTI.GOV)

Zhu Shiyang; Nakajima, Anri; Ohashi, Takuo

2005-12-01

The interface trap generation ({delta}N{sub it}) and fixed oxide charge buildup ({delta}N{sub ot}) under negative bias temperature instability (NBTI) of p-channel metal-oxide-semiconductor field-effect transistors (pMOSFETs) with ultrathin (2 nm) plasma-nitrided SiON gate dielectrics were studied using a modified direct-current-current-voltage method and a conventional subthreshold characteristic measurement. Different stress time dependences were shown for {delta}N{sub it} and {delta}N{sub ot}. At the earlier stress times, {delta}N{sub it} dominates the threshold voltage shift ({delta}V{sub th}) and {delta}N{sub ot} is negligible. With increasing stress time, the rate of increase of {delta}N{sub it} decreases continuously, showing a saturating trend for longer stress times, while {delta}N{submore » ot} still has a power-law dependence on stress time so that the relative contribution of {delta}N{sub ot} increases. The thermal activation energy of {delta}N{sub it} and the NBTI lifetime of pMOSFETs, compared at a given stress voltage, are independent of the peak nitrogen concentration of the SiON film. This indicates that plasma nitridation is a more reliable method for incorporating nitrogen in the gate oxide.« less

Intersubject variability of near-infrared spectroscopy signals during sensorimotor cortex activation.

PubMed

Sato, Hiroki; Fuchino, Yutaka; Kiguchi, Masashi; Katura, Takusige; Maki, Atsushi; Yoro, Takeshi; Koizumi, Hideaki

2005-01-01

We investigate the intersubject signal variability of near-infrared spectroscopy (NIRS), which is commonly used for noninvasive measurement of the product of the optical path length and the concentration change in oxygenated hemoglobin (DeltaC'oxy) and deoxygenated hemoglobin (DeltaC'deoxy) and their sum (DeltaC'total) related to human cortical activation. We do this by measuring sensorimotor cortex activation in 31 healthy adults using 24-measurement-position near-infrared (NIR) topography. A finger-tapping task is used to activate the sensorimotor cortex, and significant changes in the hemisphere contralateral to the tapping hand are assessed as being due to the activation. Of the possible patterns of signal changes, 90% include a positive DeltaC'oxy, 76% included a negative DeltaC'deoxy, and 73% included a positive DeltaC'total. The DeltaC'deoxy and DeltaC'total are less consistent because of a large intersubject variability in DeltaC'deoxy; in some cases there is a positive DeltaC'deoxy. In the cases with no positive DeltaC'oxy in the contralateral hemisphere, there are cases of other possible changes for either or both hemispheres and no cases of no change in any hemoglobin species in either hemisphere. These results suggest that NIR topography is useful for observing brain activity in most cases, although intersubject signal variability still needs to be resolved.

TEMPORAL AND SPATIAL ANALYSES OF SPECTRAL INDICES OF NONTHERMAL EMISSIONS DERIVED FROM HARD X-RAYS AND MICROWAVES

DOE Office of Scientific and Technical Information (OSTI.GOV)

Asai, Ayumi; Kiyohara, Junko; Takasaki, Hiroyuki

2013-02-15

We studied electron spectral indices of nonthermal emissions seen in hard X-rays (HXRs) and microwaves. We analyzed 12 flares observed by the Hard X-Ray Telescope aboard Yohkoh, Nobeyama Radio Polarimeters, and the Nobeyama Radioheliograph (NoRH), and compared the spectral indices derived from total fluxes of HXRs and microwaves. Except for four events, which have very soft HXR spectra suffering from the thermal component, these flares show a gap {Delta}{delta} between the electron spectral indices derived from HXRs {delta} {sub X} and those from microwaves {delta}{sub {mu}} ({Delta}{delta} = {delta} {sub X} - {delta}{sub {mu}}) of about 1.6. Furthermore, from themore » start to the peak times of the HXR bursts, the time profiles of the HXR spectral index {delta} {sub X} evolve synchronously with those of the microwave spectral index {delta}{sub {mu}}, keeping the constant gap. We also examined the spatially resolved distribution of the microwave spectral index by using NoRH data. The microwave spectral index {delta}{sub {mu}} tends to be larger, which means a softer spectrum, at HXR footpoint sources with stronger magnetic field than that at the loop tops. These results suggest that the electron spectra are bent at around several hundreds of keV, and become harder at the higher energy range that contributes the microwave gyrosynchrotron emission.« less

Quantifying nonhomogeneous colors in agricultural materials. Part II: comparison of machine vision and sensory panel evaluations.

PubMed

Balaban, M O; Aparicio, J; Zotarelli, M; Sims, C

2008-11-01

The average colors of mangos and apples were measured using machine vision. A method to quantify the perception of nonhomogeneous colors by sensory panelists was developed. Three colors out of several reference colors and their perceived percentage of the total sample area were selected by untrained panelists. Differences between the average colors perceived by panelists and those from the machine vision were reported as DeltaE values (color difference error). Effects of nonhomogeneity of color, and using real samples or their images in the sensory panels on DeltaE were evaluated. In general, samples with more nonuniform colors had higher DeltaE values, suggesting that panelists had more difficulty in evaluating more nonhomogeneous colors. There was no significant difference in DeltaE values between the real fruits and their screen image, therefore images can be used to evaluate color instead of the real samples.

Future Change to Tide-Influenced Deltas

NASA Astrophysics Data System (ADS)

Nienhuis, Jaap H.; Hoitink, A. J. F. (Ton); Törnqvist, Torbjörn E.

2018-04-01

Tides tend to widen deltaic channels and shape delta morphology. Here we present a predictive approach to assess a priori the effect of fluvial discharge and tides on deltaic channels. We show that downstream channel widening can be quantified by the ratio of the tide-driven discharge and the fluvial discharge, along with a second metric representing flow velocities. A test of our new theory on a selection of 72 deltas globally shows good correspondence to a wide range of environments, including wave-dominated deltas, river-dominated deltas, and alluvial estuaries. By quantitatively relating tides and fluvial discharge to delta morphology, we offer a first-order prediction of deltaic change that may be expected from altered delta hydrology. For example, we expect that reduced fluvial discharge in response to dam construction will lead to increased tidal intrusion followed by enhanced tide-driven sediment import into deltas, with implications for navigation and other human needs.

CASSCF/CI calculations for first row transition metal hydrides - The TiH(4-phi), VH(5-delta), CrH(6-sigma-plus), MnH(7-sigma-plus), FeH(4,6-delta) and NiH(2-delta) states

NASA Technical Reports Server (NTRS)

Walch, S. P.; Bauschlicher, C. W., Jr.

1983-01-01

Calculations are performed for the predicted ground states of TiH(4-phi), VH(5-delta), CrH(6-sigma-plus), MnH(7-sigma-plus), Fett(4,6-delta) and NiH(2-delta). For FeH both the 6-delta and 4-delta states are studied, since both are likely candidates for the ground state. The ground state symmetries are predicted based on a combination of atomic coupling arguments and coupling of 4s(2)3d(n) and 4s(1)3d(n+1) terms in the molecular system. Electron correlation is included by a CASSCF/CI (SD) treatment. The CASSCF includes near-degeneracy effects, while correlation of the 3d electrons in included at the CI level.

Magnetic structure of rare-earth dodecaborides

DOE Office of Scientific and Technical Information (OSTI.GOV)

Siemensmeyer, K.; Flachbart, K.; Gabani, S.

2006-09-15

We have investigated the magnetic structure of HoB{sub 12}, ErB{sub 12} and TmB{sub 12} by neutron diffraction on isotopically enriched single-crystalline samples. Results in zero field as well as in magnetic field up to 5T reveal modulated incommensurate magnetic structures in these compounds. The basic reflections can be indexed with q=(1/2+/-{delta}, 1/2+/-{delta}, 1/2+/-{delta}), where {delta}=0.035 both for HoB{sub 12} and TmB{sub 12} and with q=(3/2+/-{delta}, 1/2+/-{delta}, 1/2+/-{delta}), where {delta}=0.035, for ErB{sub 12}. In an applied magnetic field, new phases are observed. The complex magnetic structure of these materials seems to result from the interplay between the RKKY and dipole-dipole interaction.more » The role of frustration due to the fcc symmetry of dodecaborides and the crystalline electric field effect is also considered.« less

Understanding pesticides in California's Delta

USGS Publications Warehouse

Kuivila, Kathryn; Orlando, James L.

2012-01-01

The Sacramento-San Joaquin River Delta (Delta) is the hub of California’s water system and also an important habitat for imperiled fish and wildlife. Aquatic organisms are exposed to mixtures of pesticides that flow through the maze of Delta water channels from sources including agricultural, landscape, and urban pest-control applications. While we do not know all of the effects pesticides have on the ecosystem, there is evidence that they cause some damage to organisms in the Delta. Decades of USGS research have provided a good understanding of when, where, and how pesticides enter the Delta. However, pesticide use is continually changing. New field studies and methods are needed so that scientists can analyze which pesticides are present in the Delta, and at what concentrations, enabling them to estimate exposure and ultimate effects on organisms. Continuing research will provide resource managers and stakeholders with crucial information to manage the Delta wisely.

Casscf/ci Calculations for First Row Transition Metal Hydrides - the TIH(4-PHI), VH(5-DELTA), CRH(6-SIGMA-PLUS), MNH(7-SIGMA-PLUS), FEH(4,6-DELTA) and NIH(2-DELTA) States

NASA Astrophysics Data System (ADS)

Walch, S. P.; Bauschlicher, C. W., Jr.

1983-04-01

Calculations are performed for the predicted ground states of TiH(4-phi), VH(5-delta), CrH(6-sigma-plus), MnH(7-sigma-plus), Fett(4,6-delta) and NiH(2-delta). For FeH both the 6-delta and 4-delta states are studied, since both are likely candidates for the ground state. The ground state symmetries are predicted based on a combination of atomic coupling arguments and coupling of 4s(2)3d(n) and 4s(1)3d(n+1) terms in the molecular system. Electron correlation is included by a CASSCF/CI (SD) treatment. The CASSCF includes near-degeneracy effects, while correlation of the 3d electrons in included at the CI level.

New Treatment of Strongly Anisotropic Scattering Phase Functions: The Delta-M+ Method

NASA Astrophysics Data System (ADS)

Stamnes, K. H.; Lin, Z.; Chen, N.; Fan, Y.; Li, W.; Stamnes, S.

2017-12-01

The treatment of strongly anisotropic scattering phase functions is still a challenge for accurate radiance computations. The new Delta-M+ method resolves this problem by introducing a reliable, fast, accurate, and easy-to-use Legendre expansion of the scattering phase function with modified moments. Delta-M+ is an upgrade of the widely-used Delta-M method that truncates the forward scattering cone into a Dirac-delta-function (a direct beam), where the + symbol indicates that it essentially matches moments above the first 2M terms. Compared with the original Delta-M method, Delta-M+ has the same computational efficiency, but the accuracy has been increased dramatically. Tests show that the errors for strongly forward-peaked scattering phase functions are greatly reduced. Furthermore, the accuracy and stability of radiance computations are also significantly improved by applying the new Delta-M+ method.

[Comparison of color reappearance between metal-ceram restoration and foundry-ceram restoration using crystaleye spectrophotometer].

PubMed

Shi, Tao; Zhang, Ning; Kong, Fan-wen; Zhan, De-song

2010-10-01

To study the color reappearance effect of metal-ceram restoration and foundry-ceram restoration using Crystaleye spectrophotometer. 58 metal-ceram restorations and 58 foundry-ceram restorations according to the result of the Crystaleye spectrophotometer were made respectively. The deltaE between restorations and natural teeth as referenced were analyzed. And satisfaction of dentists and patients were evaluated. The deltaE between metal-ceram restorations and natural teeth was 7.13 +/- 0.74. The deltaE between foundry-ceram restorations and teeth was 1.47 +/- 0.84. There were statistical differences between the deltaE (P < 0.01). The satisnatural faction of dentists and patients to the foundry-ceram restorations were higher than to the metal-ceram restorations (P < 0.05). Crystaleye spectrophotometer can provide accurate reference for foundry-ceram restoration, but for metal-ceram restoration it is not accurate.

Predicting switched-bias response from steady-state irradiations

NASA Astrophysics Data System (ADS)

Fleetwood, D. M.; Winokur, P. S.; Riewe, L. C.

1990-12-01

A novel semiempirical model of radiation-induced charge neutralization is presented. This model is combined with 12 heuristic guidelines derived from studies of oxide- and interface-trap charge (Delta Vot and Delta Vit) buildup and annealing to develop a method to predict MOS switched-bias response from steady-state irradiations, with no free parameters. For n-channel MOS devices, predictions of Delta Vot, Delta Vit, and mobility degradation differ from experimental values through irradiation by less than 30 percent in all cases considered. This is demonstrated for gate oxides with widely varying Delta Vot and Delta Vit and for parasitic field oxides. Preliminary results suggest that n-channel MOS Delta Vot annealing and Delta Vit buildup following switched-bias irradiation and through switched-bias annealing also may be predicted with less than 30 percent error. The p-channel MOS response at high frequencies is more difficult to predict.

Investigation of Benthic Foraminiferal Non-Traditional Stable Isotopes to Reconstruct Methane Fluxes in Sedimentary Environments

NASA Technical Reports Server (NTRS)

Borrelli, C.; Gabitov, R. I.; Messenger, S. R.; Nguyen, A. N.; Torres, M. E.; Kessler, J. D.

2015-01-01

Methane (CH4) is an important greenhouse gas, with a global warming potential much higher than carbon dioxide (CO2) on a short time scale. Even if the residence time of CH4 in the atmosphere is relatively short (tens of years), one of the products of CH4 oxidation is CO2, a greenhouse gas with a much longer residence time in the atmosphere (tens to hundreds of years). CH4 has been proposed as one of the trigger mechanisms for rapid global climate change today and in the geological past. With regards to the geological past, numerous studies proposed the benthic foraminiferal carbon isotope ratio (Delta13C) as a tool to reconstruct the impact of marine CH4 on rapid climate changes; however, the investigation of modern benthic foraminiferal Delta13C have produced inconclusive results. CH4 has a distinctive hydrogen isotope (Delta(D)) and Delta13C signature compared to seawater, and sulfate reduction, often coupled to CH4 anaerobic oxidation in sediments, changes the sulfur isotope signature (Delta34S) of the remaining sulfate in porewater. Therefore, we hypothesize that the Delta(D) and Delta34S signature of infaunal benthic foraminiferal species can provide a complementary approach to Delta13C to study CH4 dynamics in sedimentary environments. Here, we present the preliminary results obtained analyzing Uvigerina peregrina Delta(D) and Delta34S from three different locations at Hydrate Ridge, offshore Oregon. Unfortunately, the lack of chemical data related to the moment of foraminiferal calcification makes difficult to build a robust relationship among the U. peregrina stable isotopes and the CH4 fluxes at the sampling sites. However, our results look very promising, as each site is characterized by a different Delta(D) and Delta34S signature. We emphasize that this study represents the first step in the development of new proxies (Delta(D)) and Delta34S), which may complement the more traditional benthic foraminiferal Delta13C values, to reconstruct marine CH4 fluxes in the geological past.

Hair analysis for delta(9)-THC, delta(9)-THC-COOH, CBN and CBD, by GC/MS-EI. Comparison with GC/MS-NCI for delta(9)-THC-COOH.

PubMed

Baptista, Maria João; Monsanto, Paula Verâncio; Pinho Marques, Estela Gouveia; Bermejo, Ana; Avila, Sofia; Castanheira, Alice Martelo; Margalho, Cláudia; Barroso, Mário; Vieira, Duarte Nuno

2002-08-14

A sensitive analytical method was developed for quantitative analysis of delta(9)-tetrahydrocannabinol (delta(9)-THC), 11-nor-delta(9)-tetrahydrocannabinol-carboxylic acid (delta(9)-THC-COOH), cannabinol (CBN) and cannabidiol (CBD) in human hair. The identification of delta(9)-THC-COOH in hair would document Cannabis use more effectively than the detection of parent drug (delta(9)-THC) which might have come from environmental exposure. Ketamine was added to hair samples as internal standard for CBN and CBD. Ketoprofen was added to hair samples as internal standard for the other compounds. Samples were hydrolyzed with beta-glucuronidase/arylsulfatase for 2h at 40 degrees C. After cooling, samples were extracted with a liquid-liquid extraction procedure (with chloroform/isopropyl alcohol, after alkalinization, and n-hexane/ethyl acetate, after acidification), which was developed in our laboratory. The extracts were analysed before and after derivatization with pentafluoropropionic anhydride (PFPA) and pentafluoropropanol (PFPOH) using a Hewlett Packard gas chromatographer/mass spectrometer detector, in electron impact mode (GC/MS-EI). Derivatized delta(9)-THC-COOH was also analysed using a Hewlett Packard gas chromatographer/mass spectrometer detector, in negative ion chemical ionization mode (GC/MS-NCI) using methane as the reagent gas. Responses were linear ranging from 0.10 to 5.00 ng/mg hair for delta(9)-THC and CBN, 0.10-10.00 ng/mg hair for CBD, 0.01-5.00 ng/mg for delta(9)-THC-COOH (r(2)>0.99). The intra-assay precisions ranged from <0.01 to 12.40%. Extraction recoveries ranged from 80.9 to 104.0% for delta(9)-THC, 85.9-100.0% for delta(9)-THC-COOH, 76.7-95.8% for CBN and 71.0-94.0% for CBD. The analytical method was applied to 87 human hair samples, obtained from individuals who testified in court of having committed drug related crimes. Quantification of delta(9)-THC-COOH using GC/MS-NCI was found to be more convenient than GC/MS-EI. The latter may give rise to false negatives due to the detection limit.

Holocene evolution of a wave-dominated fan-delta: Godavari delta, India

NASA Astrophysics Data System (ADS)

Saito, Y.; Nageswara Rao, K.; Nagakumar, K.; Demudu, G.; Rajawat, A.; Kubo, S.; Li, Z.

2013-12-01

The Godavari delta is one of the world's largest wave-dominated deltas. The Godavari River arises in the Western Ghats near the west coast of India and drains an area of about 3.1x10^5 km^2, flowing about 1465 km southeast across the Indian peninsula to the Bay of Bengal. The Godavari delta consists of a gentle seaward slope from its apex (12 m elevation) at Rajahmundry and a coastal beach-ridge plain over a distance of about 75 km and covers ~5200 km^2 as a delta plain. The river splits into two major distributary channels, the Gautami and the Vasishta, at a barrage constructed in the mid-1800s. The coastal environment of the deltaic coast is microtidal (~1 m mean tidal range) and wave-dominated (~1.5 m mean wave height in the June-September SW monsoon season, ~0.8 m in the NE monsoon season). Models of the Holocene evolution of the Godavari delta have changed from a zonal progradation model (e.g. Nageswara Rao & Sadakata, 1993) to a truncated cuspate delta model (Nageswara Rao et al., 2005, 2012). Twelve borehole cores (340 m total length), taken in the coastal delta plain during 2010-2013, yielded more than 100 C-14 dates. Sediment facies and C-14 dates from these and previous cores and remote-sensing data support a new delta evolution model. The Holocene coastal delta plain is divided into two parts by a set of linear beach ridges 12-14 km landward from the present shoreline in the central part of the delta. The location of the main depocenter (lobe) has shifted during the Holocene from 1) the center to 2) the west, 3) east, 4) center, 5) west, and 6) east. The linear beach ridges separate the first three from the last three stages. These lobe shifts are controlled by river channel shifts near the apex. Just as the current linear shoreline of the central part of the delta and the concave-up nearshore topography are the result of coastal erosion of a cuspate delta, the linear beach ridges indicate a former eroded shoreline. An unconformity within the deltaic sediments also indicates erosional environments during the formation of the linear shoreline. We interpret this unconformity as a wave-ravinement surface in a regressive delta succession reflecting the decrease of sediment supply due to lobe shifts (or avulsion), and not as a marine erosion surface due to forced regression. Similar erosion surface is recognized in the Yellow River delta (Saito et al., 2000). Discrimination of either surface for ancient sediments and rocks in a wave-dominated setting will be important in sequence-stratigraphic interpretation. Coastal erosion and deposition have occurred in wave-dominated deltas naturally on centennial to millenneial time scales, resulting in delta progradation during the Holocene. However recent decrease of sediment discharge due to dam construction and irrigation on decadal time scales has been exacerbating coastal erosion significantly, resulting in delta shrinking in the Godavari delta. Nageswara Rao, K., Sadakata, N.: In Kay, R. (Ed.), Deltas of the World. American Society of Civil Engineers, New York, 1-15, 1993. Nageswara Rao, K. et al.: In Bhattacharya, J.P., Gioson, L. (Eds.), River Deltas--Concepts, Models and Examples: SEPM Special Publication 83, 435-451, 2005. Nageswara Rao, K. et al.: Geomorphology 175-176, 163¬-175, 2012. Saito, Y. et al.: J Asian Earth Sci. 18, 489-497, 2000.

Compound-specific nitrogen isotope analysis of D-alanine, L-alanine, and valine: application of diastereomer separation to delta15N and microbial peptidoglycan studies.

PubMed

Takano, Yoshinori; Chikaraishi, Yoshito; Ogawa, Nanako O; Kitazato, Hiroshi; Ohkouchi, Naohiko

2009-01-01

We have developed an analytical method to determine the compound-specific nitrogen isotope compositions of individual amino acid enantiomers using gas chromatography/combustion/isotope ratio mass spectrometry. A novel derivatization of amino acid diastereomers by optically active (R)-(-)-2-butanol or (S)-(+)-2-butanol offers two advantages for nitrogen isotope analysis. First, chromatographic chiral separation can be achieved without the use of chiral stationary-phase columns. Second, the elution order of these compounds on the chromatogram can be switched by a designated esterification reaction. We applied the method to the compound-specific nitrogen isotope analysis of D- and L-alanine in a peptidoglycan derived from the cell walls of cultured bacteria (Firmicutes and Actinobacteria; Enterococcus faecalis, Staphylococcus aureus, Staphylococcus staphylolyticus, Lactobacillus acidophilus, Bacillus subtilis, Micrococcus luteus, and Streptomyces sp.), natural whole bacterial cells (Bacillus subtilis var. natto), (pseudo)-peptidoglycan from archaea (Methanobacterium sp.), and cell wall from eukaryota (Saccharomyces cerevisiae). We observed statistically significant differences in nitrogen isotopic compositions; e.g., delta15N ( per thousand vs air) in Staphylococcus staphylolyticus for d-alanine (19.2 +/- 0.5 per thousand, n = 4) and L-alanine (21.3 +/- 0.8 per thousand, n = 4) and in Bacillus subtilis for D-alanine (6.2 +/- 0.2 per thousand, n = 3) and L-alanine (8.2 +/- 0.4 per thousand, n = 3). These results suggest that enzymatic reaction pathways, including the alanine racemase reaction, produce a nitrogen isotopic difference in amino acid enantiomers, resulting in 15N-depleted D-alanine. This method is expected to facilitate compound-specific nitrogen isotope studies of amino acid stereoisomers.

Biogeochemistry of Arsenic in Groundwater Flow Systems: The Case of Southern Louisiana

NASA Astrophysics Data System (ADS)

Johannesson, K. H.; Yang, N.; Datta, S.

2017-12-01

Arsenic (As) is a highly toxic and carcinogenic metalloid that can cause serious health effects, including increased risk of cancers, infant mortality, and reduced intellectual and motor function in children to populations chronically exposed to As. Recent estimates suggest that more than 140 million people worldwide are drinking As-contaminated groundwater (i.e., As ≥ 10 µg kg-1), and the most severely affected region is the Ganges-Brahmaputra-Meghna delta in Bangladesh and India (i.e., Bengal Basin). Arsenic appears to be mobilized to Bengal Basin groundwaters by reductive dissolution of Fe oxides in aquifer sediments with the source of the labile organic matter occurring in the aquifer sediments. Studies within the lower Mississippi River delta of southern Louisiana (USA) also reveal high As concentrations (up to 640 µg kg-1) in shallow groundwaters. It is not known what affects, if any, the elevated groundwater As has had on local communities. The regional extent of high As shallow groundwaters is controlled, in part, by the distribution of Holocene sediments, deltaic deposits, and organic-rich sediments, similar to the Bengal Basin. Field and laboratory studies suggest that As is largely of geogenic origin, and further that microbial reduction of Fe(III)/Mn(IV) oxides/oxyhydroxides within the sediments contributes the bulk of the As to the groundwaters. Incubation studies are supported by biogeochemical reactive transport modeling, which also indicates reductive dissolution of metal oxides/oxyhydroxides as the likely source of As to these groundwaters. Finally, reactive transport modeling of As in shallow groundwaters suggests that sorption to aquifer mineral surfaces limits the transport of As after mobilization, which may explain, in part, the heterogeneous distribution of As in groundwaters of southern Louisiana and, perhaps, the Bengal Basin.

Hydrologic Treatments Affect Gaseous Carbon Loss From Organic Soils, Twitchell Island, California, October 1995-December 1997

USGS Publications Warehouse

Miller, Robin L.; Hastings, Lauren; Fujii, Roger

2000-01-01

Subsidence of organic soils in the Sacramento-San Joaquin Delta, California, has increased the potential for levee failure and flooding in the region. Because oxidation of the peat soils is a primary cause of subsidence, reversion of affected lands to wetlands has been proposed as a mitigation tool. To test this hypothesis, three 10 x 10 meter enclosures were built on Twitchell Island in the Delta and managed as different wetland habitats. Emissions of carbon dioxide and methane were measured in situ from October 1995 through December 1997, from the systems that developed under the different water-management treatments. Treatments included a seasonal control (SC) under current island management conditions; reverse flooding (RF), where the land is intentionally flooded from early dry season until midsummer; permanent shallow flooding (F); and a more deeply flooded, open-water (OW) treatment. Hydrologic treatments affected microbial processes, plant community and temperature dynamics which, in turn, affected carbon cycling. Water-management treatments with a period of flooding significantly decreased gaseous carbon emissions compared to the seasonal control. Permanent flooding treatments showed significantly higher methane fluxes than treatments with some period of aerobic conditions. Shallow flooding treatments created conditions that support cattail [Typha species (spp.)] marshes, while deep flooding precluded emergent vegetation. Carbon inputs to the permanent shallow flooding treatment tended to be greater than the measured losses. This suggests that permanent shallow flooding has the greatest potential for managing subsidence of these soils by generating organic substrate more rapidly than is lost through decomposition. Carbon input estimates of plant biomass compared to measurements of gaseous carbon losses indicate the potential for mitigation of subsidence through hydrologic management of the organic soils in the area.

Communities of archaea and bacteria in a subsurface radioactive thermal spring in the Austrian Central Alps, and evidence of ammonia-oxidizing Crenarchaeota.

PubMed

Weidler, Gerhard W; Dornmayr-Pfaffenhuemer, Marion; Gerbl, Friedrich W; Heinen, Wolfgang; Stan-Lotter, Helga

2007-01-01

Scanning electron microscopy revealed great morphological diversity in biofilms from several largely unexplored subterranean thermal Alpine springs, which contain radium 226 and radon 222. A culture-independent molecular analysis of microbial communities on rocks and in the water of one spring, the "Franz-Josef-Quelle" in Bad Gastein, Austria, was performed. Four hundred fifteen clones were analyzed. One hundred thirty-two sequences were affiliated with 14 bacterial operational taxonomic units (OTUs) and 283 with four archaeal OTUs. Rarefaction analysis indicated a high diversity of bacterial sequences, while archaeal sequences were less diverse. The majority of the cloned archaeal 16S rRNA gene sequences belonged to the soil-freshwater-subsurface (1.1b) crenarchaeotic group; other representatives belonged to the freshwater-wastewater-soil (1.3b) group, except one clone, which was related to a group of uncultivated Euryarchaeota. These findings support recent reports that Crenarchaeota are not restricted to high-temperature environments. Most of the bacterial sequences were related to the Proteobacteria (alpha, beta, gamma, and delta), Bacteroidetes, and Planctomycetes. One OTU was allied with Nitrospina sp. (delta-Proteobacteria) and three others grouped with Nitrospira. Statistical analyses suggested high diversity based on 16S rRNA gene analyses; the rarefaction plot of archaeal clones showed a plateau. Since Crenarchaeota have been implicated recently in the nitrogen cycle, the spring environment was probed for the presence of the ammonia monooxygenase subunit A (amoA) gene. Sequences were obtained which were related to crenarchaeotic amoA genes from marine and soil habitats. The data suggested that nitrification processes are occurring in the subterranean environment and that ammonia may possibly be an energy source for the resident communities.

Stable carbon isotope fractionation by sulfate-reducing bacteria

NASA Technical Reports Server (NTRS)

Londry, Kathleen L.; Des Marais, David J.

2003-01-01

Biogeochemical transformations occurring in the anoxic zones of stratified sedimentary microbial communities can profoundly influence the isotopic and organic signatures preserved in the fossil record. Accordingly, we have determined carbon isotope discrimination that is associated with both heterotrophic and lithotrophic growth of pure cultures of sulfate-reducing bacteria (SRB). For heterotrophic-growth experiments, substrate consumption was monitored to completion. Sealed vessels containing SRB cultures were harvested at different time intervals, and delta(13)C values were determined for gaseous CO(2), organic substrates, and products such as biomass. For three of the four SRB, carbon isotope effects between the substrates, acetate or lactate and CO(2), and the cell biomass were small, ranging from 0 to 2 per thousand. However, for Desulfotomaculum acetoxidans, the carbon incorporated into biomass was isotopically heavier than the available substrates by 8 to 9 per thousand. SRB grown lithoautotrophically consumed less than 3% of the available CO(2) and exhibited substantial discrimination (calculated as isotope fractionation factors [alpha]), as follows: for Desulfobacterium autotrophicum, alpha values ranged from 1.0100 to 1.0123; for Desulfobacter hydrogenophilus, the alpha value was 0.0138, and for Desulfotomaculum acetoxidans, the alpha value was 1.0310. Mixotrophic growth of Desulfovibrio desulfuricans on acetate and CO(2) resulted in biomass with a delta(13)C composition intermediate to that of the substrates. The extent of fractionation depended on which enzymatic pathways were used, the direction in which the pathways operated, and the growth rate, but fractionation was not dependent on the growth phase. To the extent that environmental conditions affect the availability of organic substrates (e.g., acetate) and reducing power (e.g., H(2)), ecological forces can also influence carbon isotope discrimination by SRB.

Sediment and Vegetation Controls on Delta Channel Networks

NASA Astrophysics Data System (ADS)

Lauzon, R.; Murray, A. B.; Piliouras, A.; Kim, W.

2016-12-01

Numerous factors control the patterns of distributary channels formed on a delta, including water and sediment discharge, grain size, sea level rise rates, and vegetation type. In turn, these channel networks influence the shape and evolution of a delta, including what types of plant and animal life - such as humans - it can support. Previous fluvial modeling and flume experiments, outside of the delta context, have addressed how interactions between sediment and vegetation, through their influence on lateral transport of sediment, determine what type of channel networks develops. Similar interactions likely also shape delta flow patterns. Vegetation introduces cohesion, tending to reduce channel migration rates and strengthen existing channel banks, reinforcing existing channels and resulting in localized, relatively stable flow patterns. On the other hand, sediment transport processes can result in lateral migration and frequent switching of active channels, resulting in flow resembling that of a braided stream. While previous studies of deltas have indirectly explored the effects of vegetation through the introduction of cohesive sediment, we directly incorporate key effects of vegetation on flow and sediment transport into the delta-building model DeltaRCM to explore how these effects influence delta channel network formation. Model development is informed by laboratory flume experiments at UT Austin. Here we present initial results of experiments exploring the effects of sea level rise rate, sediment grain size, vegetation type, and vegetation growth rate on delta channel network morphology. These results support the hypothesis that the ability for lateral transport of sediment to occur plays a key role in determining the evolution of delta channel networks and delta morphology.

Rise and Fall of one of World's largest deltas; the Mekong delta in Vietnam

NASA Astrophysics Data System (ADS)

Minderhoud, P. S. J.; Eslami Arab, S.; Pham, H. V.; Erkens, G.; van der Vegt, M.; Oude Essink, G.; Stouthamer, E.; Hoekstra, P.

2017-12-01

The Mekong delta is the third's largest delta in the world. It is home to almost 20 million people and an important region for the food security in South East Asia. As most deltas, the Mekong delta is the dynamic result of a balance of sediment supply, sea level rise and subsidence, hosting a system of fresh and salt water dynamics. Ongoing urbanization, industrialization and intensification of agricultural practices in the delta, during the past decades, resulted in growing domestic, agricultural and industrial demands, and have led to a dramatic increase of fresh water use. Since the year 2000, the amount of fresh groundwater extracted from the subsurface increased by 500%. This accelerated delta subsidence as the groundwater system compacts, with current sinking rates exceeding global sea level rise up to an order of magnitude. These high sinking rates have greatly altered the sediment budget of the delta and, with over 50% of the Mekong delta surface elevated less than 1 meter above sea level, greatly increase vulnerability to flooding and storm surges and ultimately, permanent inundation. Furthermore, as the increasingly larger extractions rapidly reduce the fresh groundwater reserves, groundwater salinization subsequently increases. On top of that, dry season low-flows by the Mekong river cause record salt water intrusion in the delta's estuarine system, creating major problems for rice irrigation. We present the work of three years research by the Dutch-Vietnamese `Rise and Fall' project on land subsidence and salinization in both groundwater and surface water in the Vietnamese Mekong delta.

Heterodimerization of mu and delta opioid receptors: A role in opiate synergy.

PubMed

Gomes, I; Jordan, B A; Gupta, A; Trapaidze, N; Nagy, V; Devi, L A

2000-11-15

Opiate analgesics are widely used in the treatment of severe pain. Because of their importance in therapy, different strategies have been considered for making opiates more effective while curbing their liability to be abused. Although most opiates exert their analgesic effects primarily via mu opioid receptors, a number of studies have shown that delta receptor-selective drugs can enhance their potency. The molecular basis for these findings has not been elucidated previously. In the present study, we examined whether heterodimerization of mu and delta receptors could account for the cross-modulation previously observed between these two receptors. We find that co-expression of mu and delta receptors in heterologous cells followed by selective immunoprecipitation results in the isolation of mu-delta heterodimers. Treatment of these cells with extremely low doses of certain delta-selective ligands results in a significant increase in the binding of a mu receptor agonist. Similarly, treatment with mu-selective ligands results in a significant increase in the binding of a delta receptor agonist. This robust increase is also seen in SKNSH cells that endogenously express both mu and delta receptors. Furthermore, we find that a delta receptor antagonist enhances both the potency and efficacy of the mu receptor signaling; likewise a mu antagonist enhances the potency and efficacy of the delta receptor signaling. A combination of agonists (mu and delta receptor selective) also synergistically binds and potentiates signaling by activating the mu-delta heterodimer. Taken together, these studies show that heterodimers exhibit distinct ligand binding and signaling characteristics. These findings have important clinical ramifications and may provide new foundations for more effective therapies.

The Delta Connectome: A network-based framework for studying connectivity in river deltas

NASA Astrophysics Data System (ADS)

Passalacqua, Paola

2017-01-01

Many deltas, including the Mississippi River Delta, have been losing land at fast rates compromising the safety and sustainability of their ecosystems. Knowledge of delta vulnerability has raised global concern and stimulated active interdisciplinary research as deltas are densely populated landscapes, rich in agriculture, fisheries, oil and gas, and important means for navigation. There are many ways of looking at this problem which all contribute to a deeper understanding of the functioning of coastal systems. One aspect that has been overlooked thus far, yet fundamental for advancing delta science is connectivity, both physical (how different portions of the system interact with each other) as well as conceptual (pathways of process coupling). In this paper, I propose a framework called Delta Connectome for studying connectivity in river deltas based on different representations of a delta as a network. After analyzing the classic network representation as a set of nodes (e.g., bifurcations and junctions or regions with distinct physical or statistical behavior) and links (e.g., channels), I show that from connectivity considerations the delta emerges as a leaky network that continuously exchanges fluxes of matter, energy, and information with its surroundings and evolves over time. I explore each network representation and show through several examples how quantifying connectivity can bring to light aspects of deltaic systems so far unexplored and yet fundamental to understanding system functioning and informing coastal management and restoration. This paper serves both as an introduction to the Delta Connectome framework as well as a review of recent applications of the concepts of network and connectivity to deltaic systems within the Connectome framework.

Mates to E = mc/sup 2/ and to the Heisenberg uncertainty relations

DOE Office of Scientific and Technical Information (OSTI.GOV)

Bell, A.B.; Bell, D.M.

1976-02-01

E = mc/sup 2/ is found to be a special case of E = sigma/sup +-1/c/sup n/, where sigma is any one of four susceptibilities, namely electric, magnetic, gravitational, and elastic. Let l be length, t time, ..delta..t time dilation, and ..delta..l a measure of Fitzgerald--Lorentz contraction. A particle is stated to be the manifestation of a collection of susceptibilities which arise when (..delta..l)/l = (..delta..t)/t. Then (..delta..E)/E = 5(..delta..t)/2t = +- (..delta.. sigma)/sigma. Corresponding to susceptibility, special energy particles are postulated which exhibit SU(3) symmetry. Related to the susceptibilities are five new Heisenberg uncertainty relations. Three new conservation lawsmore » for particles are proposed.« less

Three Isotopes of Oxygen in Lunar Samples - The Same as Earth or Different?

NASA Technical Reports Server (NTRS)

Pillinger, C. T.; Greenwood, R. C.; Johnson, D.; Gibson, E. K.; Miller, M. F.; Franchi, I. A.

2014-01-01

One of the most important measurements that can be made for any extraterrestrial sample is determination of the relative abundance of O-16, O-17 and O-18. To make the comparison, investigators report their results as delta (d) values compared to terrestrial delta O-17 vs delta O-18 for a suite of specimens because for any given reservoir, i.e. a planetary parent body such as the Earth or Mars, the numbers should define a line of gradient approximately one half. Different bodies should be identified from their delta O-17 which has traditionally been defined by the equation delta O-17 = delta O-17 - (a constant, ca. 0.52) × delta O-18.

Microbial Pest Control Agents: Are they a Specific And Safe Tool for Insect Pest Management?

PubMed

Deshayes, Caroline; Siegwart, Myriam; Pauron, David; Froger, Josy-Anne; Lapied, Bruno; Apaire-Marchais, Véronique

2017-01-01

Microorganisms (viruses, bacteria and fungi) or their bioactive agents can be used as active substances and therefore are referred as Microbial Pest Control Agents (MPCA). They are used as alternative strategies to chemical insecticides to counteract the development of resistances and to reduce adverse effects on both environment and human health. These natural entomopathogenic agents, which have specific modes of action, are generally considered safer as compared to conventional chemical insecticides. Baculoviruses are the only viruses being used as the safest biological control agents. They infect insects and have narrow host ranges. Bacillus thuringiensis (Bt) is the most widely and successfully used bioinsecticide in the integrated pest management programs in the world. Bt mainly produces crystal delta-endotoxins and secreted toxins. However, the Bt toxins are not stable for a very long time and are highly sensitive to solar UV. So genetically modified plants that express toxins have been developed and represent a large part of the phytosanitary biological products. Finally, entomopathogenic fungi and particularly, Beauveria bassiana and Metarhizium anisopliae, are also used for their insecticidal properties. Most studies on various aspects of the safety of MPCA to human, non-target organisms and environment have only reported acute but not chronic toxicity. This paper reviews the modes of action of MPCA, their toxicological risks to human health and ecotoxicological profiles together with their environmental persistence. This review is part of the special issue "Insecticide Mode of Action: From Insect to Mammalian Toxicity". Copyright© Bentham Science Publishers; For any queries, please email at epub@benthamscience.org.

Coral microbial communities, zooxanthellae and mucus along gradients of seawater depth and coastal pollution.

PubMed

Klaus, James S; Janse, Ingmar; Heikoop, Jeffrey M; Sanford, Robert A; Fouke, Bruce W

2007-05-01

The high incidence of coral disease in shallow coastal marine environments suggests seawater depth and coastal pollution have an impact on the microbial communities inhabiting healthy coral tissues. A study was undertaken to determine how bacterial communities inhabiting tissues of the coral Montastraea annularis change at 5 m, 10 m and 20 m water depth in varying proximity to the urban centre and seaport of Willemstad, Curaçao, Netherlands Antilles. Analyses of terminal restriction fragment length polymorphisms (TRFLP) of 16S rRNA gene sequences show significant differences in bacterial communities of polluted and control localities only at the shallowest seawater depth. Furthermore, distinct differences in bacterial communities were found with increasing water depth. Comparisons of TRFLP peaks with sequenced clone libraries indicate the black band disease cyanobacterium clone CD1C11 is common and most abundant on healthy corals in less than 10 m water depth. Similarly, sequences belonging to a previously unrecognized group of likely phototrophic bacteria, herein referred to as CAB-I, were also more common in shallow water. To assess the influence of environmental and physiologic factors on bacterial community structure, canonical correspondence analysis was performed using explanatory variables associated with: (i) light availability; (ii) seawater pollution; (iii) coral mucus composition; (iv) the community structure of symbiotic algae; and (v) the photosynthetic activity of symbiotic algae. Eleven per cent of the variation in bacterial communities was accounted for by covariation with these variables; the most important being photosynthetically active radiation (sunlight) and the coral uptake of sewage-derived compounds as recorded by the delta(15)N of coral tissue.

High-level conversion of L-lysine into 5-aminovalerate that can be used for nylon 6,5 synthesis.

PubMed

Park, Si Jae; Oh, Young Hoon; Noh, Won; Kim, Hye Young; Shin, Jae Ho; Lee, Eun Gyo; Lee, Seungwoon; David, Yokimiko; Baylon, Mary Grace; Song, Bong Keun; Jegal, Jonggeon; Lee, Sang Yup; Lee, Seung Hwan

2014-10-01

L-Lysine is a potential feedstock for the production of bio-based precursors for engineering plastics. In this study, we developed a microbial process for high-level conversion of L-lysine into 5-aminovalerate (5AVA) that can be used as a monomer in nylon 6,5 synthesis. Recombinant Escherichia coli WL3110 strain expressing Pseudomonas putida delta-aminovaleramidase (DavA) and lysine 2-monooxygenase (DavB) was grown to high density in fed-batch culture and used as a whole cell catalyst. High-density E. coli WL3110 expressing DavAB, grown to an optical density at 600 nm (OD600 ) of 30, yielded 36.51 g/L 5AVA from 60 g/L L-lysine in 24 h. Doubling the cell density of E. coli WL3110 improved the conversion yield to 47.96 g/L 5AVA from 60 g/L of L-lysine in 24 h. 5AVA production was further improved by doubling the L-lysine concentration from 60 to 120 g/L. The highest 5AVA titer (90.59 g/L; molar yield 0.942) was obtained from 120 g/L L-lysine by E. coli WL3110 cells grown to OD600 of 60. Finally, nylon 6,5 was synthesized by bulk polymerization of ϵ-caprolactam and δ-valerolactam prepared from microbially synthesized 5AVA. The hybrid system demonstrated here has promising possibilities for application in the development of industrial bio-nylon production processes. Copyright © 2014 WILEY-VCH Verlag GmbH & Co. KGaA, Weinheim.

delta-Hexachlorocyclohexane (delta-HCH)

Integrated Risk Information System (IRIS)

delta - Hexachlorocyclohexane ( delta - HCH ) ; CASRN 319 - 86 - 8 Human health assessment information on a chemical substance is included in the IRIS database only after a comprehensive review of toxicity data , as outlined in the IRIS assessment development process . Sections I ( Health Hazard Ass

Control of adaptive optic element displacement with the help of a magnetic rheology drive

NASA Astrophysics Data System (ADS)

Deulin, Eugeni A.; Mikhailov, Valeri P.; Sytchev, Victor V.

2000-10-01

The control system of adaptive optic of a large astronomical segmentated telescope was designed and tested. The dynamic model and the amplitude-frequency analysis of the new magnetic rheology (MR) drive are presented. The loop controlled drive consists of hydrostatic carrier, MR hydraulic loop controlling system, elastic thin wall seal, stainless seal which are united in a single three coordinate manipulator. This combination ensures short positioning error (delta) (phi)

Emotional Stroop interference for threatening words is related to reduced EEG δ-β coupling and low attentional control.

PubMed

Putman, Peter; Arias-Garcia, Elsa; Pantazi, Ioanna; van Schie, Charlotte

2012-05-01

Previously, electroencephalographic (EEG) delta-beta coupling (positive correlation between power in the fast beta and slow delta frequency bands) has been related to affective processing. For instance, differences in delta-beta coupling have been observed between people in a psychological stress condition and controls. We previously reported relationships between attentional threat processing and delta-beta coupling and individual differences in attentional control. The present study extended and replicated these findings in a large mixed gender sample (N=80). Results demonstrated that emotional Stroop task interference for threatening words was related to self-reported attentional inhibition capacity and frontal delta-beta coupling. There was no clear gender difference for delta-beta coupling (only a non-significant trend) and the relationship between delta-beta coupling and attentional threat-processing was not affected by gender. These results replicate and extend an earlier finding concerning delta-beta coupling and cognitive affect regulation and further clarify relationships between delta-beta coupling, attentional control, and threat-processing. Copyright © 2012 Elsevier B.V. All rights reserved.

Connectivity in river deltas

NASA Astrophysics Data System (ADS)

Passalacqua, P.; Hiatt, M. R.; Sendrowski, A.

2016-12-01

Deltas host approximately half a billion people and are rich in ecosystem diversity and economic resources. However, human-induced activities and climatic shifts are significantly impacting deltas around the world; anthropogenic disturbance, natural subsidence, and eustatic sea-level rise are major causes of threat to deltas and in many cases have compromised their safety and sustainability, putting at risk the people that live on them. In this presentation, I will introduce a framework called Delta Connectome for studying connectivity in river deltas based on different representations of a delta as a network. Here connectivity indicates both physical connectivity (how different portions of the system interact with each other) as well as conceptual (pathways of process coupling). I will explore several network representations and show how quantifying connectivity can advance our understanding of system functioning and can be used to inform coastal management and restoration. From connectivity considerations, the delta emerges as a leaky network that evolves over time and is characterized by continuous exchanges of fluxes of matter, energy, and information. I will discuss the implications of connectivity on delta functioning, land growth, and potential for nutrient removal.

Delta(13)C, delta(15)N and delta(2)H isotope ratio mass spectrometry of ephedrine and pseudoephedrine: application to methylamphetamine profiling.

PubMed

Collins, Michael; Cawley, Adam T; Heagney, Aaron C; Kissane, Luke; Robertson, James; Salouros, Helen

2009-07-01

Conventional chemical profiling of methylamphetamine has been used for many years to determine the synthetic route employed and where possible to identify the precursor chemicals used. In this study stable isotope ratio analysis was investigated as a means of determining the origin of the methylamphetamine precursors, ephedrine and pseudoephedrine. Ephedrine and pseudoephedrine may be prepared industrially by several routes. Results are presented for the stable isotope ratios of carbon (delta(13)C), nitrogen (delta(15)N) and hydrogen (delta(2)H) measured in methylamphetamine samples synthesized from ephedrine and pseudoephedrine of known provenance. It is clear from the results that measurement of the delta(13)C, delta(15)N and delta(2)H stable isotope ratios by elemental analyzer/thermal conversion isotope ratio mass spectrometry (EA/TC-IRMS) in high-purity methylamphetamine samples will allow determination of the synthetic source of the ephedrine or pseudoephedrine precursor as being either of a natural, semi-synthetic, or fully synthetic origin. Copyright (c) 2009 Commonwealth of Australia.

Carbon and hydrogen isotopic characterization of methane from wetlands and lakes of the Yukon-Kuskokwim Delta, Western Alaska

NASA Technical Reports Server (NTRS)

Martens, Christopher S.; Kelley, Cheryl A.; Chanton, Jeffrey P.; Showers, William J.

1992-01-01

The results are reported of a study of the carbon and hydrogen isotopic composition of methane from tundra environments of the Yukon-Kuskokwin Delta of western Alaska. The delta C-13 value of diffusive methane emissions from wet meadow tundra of the Delta is -65.82 +/- 2.21 per mil (n=18). Detritus-rich sediments of tundra lakes are loaded with methane-rich gas bubbles during the warm season. Spatial trend is the major gas concentration and isotopic values of methane in these gas bubbles appear to reflect processes associated with production rate and mechanisms; high methane concentrations, lightest delta C-13 values, the heaviest delta D value occur in detritus-rich sediments isolated from emergent vegetation. Heavier delta C-13 and lighter delta D values in methane from heavily vegetated lake margins suggest a shift toward a larger role for acetate fermentation in association with aquatic plants and plant detritus. Bubble ebullition is estimated to account for up to 17 percent of total Delta methane emissions.

Exploration gaps exist in Nigeria`s prolific delta

DOE Office of Scientific and Technical Information (OSTI.GOV)

Thomas, D.

The Niger delta region of the Republic of Nigeria is Africa`s largest oil producing area. It is clear that Nigeria will continue to contribute significantly to world petroleum production well into the 21st century: with increases in recoverable oil reserves in the Niger delta onshore and offshore; the promising potential of the Niger delta deepwater region; and a lesser but not insignificant contribution from the unexplored onshore Benue trough, part of the mid-African rift system, which has already proved to hold substantial oil reserves in the Doba basin of neighboring Chad. This is the first of five parts on Nigeria`smore » oil and gas potential. The later articles deal with Niger delta oil reserves and production, Niger delta gas reserves, the delta`s deepwater region, and the Benue trough and onshore cretaceous rift basins. This article deals with the geologic setting of the Niger delta-Benue trough region, the synrift deposits, marine sedimentation, margin evolution, geologic strata and reservoirs, reservoir character, structure and traps, hydrocarbon types, geotemperatures, and source rock quality.« less

From Natural to Design River Deltas

NASA Astrophysics Data System (ADS)

Giosan, Liviu

2016-04-01

Productive and biologically diverse, deltaic lowlands attracted humans since prehistory and may have spurred the emergence of the first urban civilizations. Deltas continued to be an important nexus for economic development across the world and are currently home for over half a billion people. But recently, under the double whammy of sea level rise and inland sediment capture behind dams, they have become the most threatened coastal landscape. Here I will address several deceptively simple questions to sketch some unexpected answers using example deltas from across the world from the Arctic to the Tropics, from the Danube to the Indus, Mississippi to Godavari and Krishna, Mackenzie to Yukon. What is a river delta? What is natural and what is not in a river delta? Are the geological and human histories of a delta important for its current management? Is maintaining a delta the same to building a new one? Can we design better deltas than Nature? These answers help us see clearly that survival of deltas in the next century depends on human intervention and is neither assured nor simple to address or universally applicable. Empirical observations on the hydrology, geology, biology and biochemistry of deltas are significantly lagging behind modeling capabilities endangering the applicability of numerical-based reconstruction solutions and need to be ramped up significantly and rapidly across the world.

Lack of genetic variation in tree ring delta13C suggests a uniform, stomatally-driven response to drought stress across Pinus radiata genotypes.

PubMed

Rowell, Douglas M; Ades, Peter K; Tausz, Michael; Arndt, Stefan K; Adams, Mark A

2009-02-01

We assessed the variation in delta(13)C signatures of Pinus radiata D. Don stemwood taken from three genetic trials in southern Australia. We sought to determine the potential of using delta(13)C signatures as selection criteria for drought tolerance. Increment cores were taken from P. radiata and were used to determine the basal area increment and the delta(13)C signature of extracted cellulose. Both growth increment and cellulose delta(13)C were affected by water availability. Growth increment and delta(13)C were negatively correlated suggesting that growth was water-limited. While there was significant genetic variation in growth, there was no significant genetic variation in cellulose delta(13)C of tree rings. This suggests that different genotypes of P. radiata display significant differences in growth and yet respond similarly to drought stress. The delta(13)C response to drought stress was more due to changes in stomatal conductance than to the variation in photosynthetic capacity, and this may explain the lack of genetic variation in delta(13)C. The lack of genetic variation in cellulose delta(13)C of tree rings precludes its use as a selection criterion for drought tolerance among P. radiata genotypes.

Delta5-olefinic acids in the seed lipids from four Ephedra species and their distribution between the alpha and beta positions of triacylglycerols. Characteristics common to coniferophytes and cycadophytes.

PubMed

Wolff, R L; Christie, W W; Pédrono, F; Marpeau, A M; Tsevegsüren, N; Aitzetmüller, K; Gunstone, F D

1999-08-01

The fatty acid compositions of the seed lipids from four Ephedra species, E. nevadensis, E. viridis, E. przewalskii, and E. gerardiana (four gymnosperm species belonging to the Cycadophytes), have been established with an emphasis on delta5-unsaturated polymethylene-interrupted fatty acids (delta5-UPIFA). Mass spectrometry of the picolinyl ester derivatives allowed characterization of 5,9- and 5,11-18:2; 5,9,12-18:3; 5,9,12,15-18:4; 5,11-20:2; 5,11,14-20:3; and 5,11,14,17-20:4 acids. Delta5-UPIFA with a delta11-ethylenic bond (mostly C20 acids) were in higher proportions than delta5-UPIFA with a delta9 double bond (exclusively C18 acids) in all species. The total delta5-UPIFA content was 17-31% of the total fatty acids, with 5,11,14-20:3 and 5,11,14,17-20:4 acids being the principal delta5-UPIFA isomers. The relatively high level of cis-vaccenic (11-18:1) acid found in Ephedra spp. seeds, the presence of its delta5-desaturation product, 5,11-18:2 acid (proposed trivial name: ephedrenic acid), and of its elongation product, 13-20:1 acid, were previously shown to occur in a single other species, Ginkgo biloba, among the approximately 170 gymnosperm species analyzed so far. Consequently, Ephedraceae and Coniferophytes (including Ginkgoatae), which have evolved separately since the Devonian period (approximately 300 million yr ago), have kept in common the ability to synthesize C18 and C20 delta5-UPIFA. We postulate the existence of two delta5-desaturases in gymnosperm seeds, one possibly specific for unsaturated acids with a delta9-ethylenic bond, and the other possibly specific for unsaturated acids with a delta11-ethylenic bond. Alternatively, the delta5-desaturases might be specific for the chain length with C18 unsaturated acids on the one hand and C20 unsaturated acids on the other hand. The resulting hypothetical pathways for the biosynthesis of delta5-UPIFA in gymnosperm seeds are only distinguished by the position of 11-18:1 acid. Moreover, 13C nuclear magnetic resonance spectroscopy of the seed oil from two Ephedra species has shown that delta5-UPIFA are essentially excluded from the internal position of triacylglycerols, a characteristic common to all of the Coniferophytes analyzed so far (more than 30 species), with the possibility of an exclusive esterification at the sn-3 position. This structural feature would also date back to the Devonian period, but might have been lost in those rare angiosperm species containing delta5-UPIFA.

Morphologic and stratigraphic evolution of muddy ebb-tidal deltas along a subsiding coast: Barataria Bay, Mississippi River delta

USGS Publications Warehouse

FitzGerald, D.M.; Kulp, M.; Penland, S.; Flocks, J.; Kindinger, J.

2004-01-01

The Barataria barrier coast formed between two major distributaries of the Mississippi River delta: the Plaquemines deltaic headland to the east and the Lafourche deltaic headland to the west. Rapid relative sea-level rise (1??03 cm year-1) and other erosional processes within Barataria Bay have led to substantial increases in the area of open water (> 775 km2 since 1956) and the attendant bay tidal prism. Historically, the increase in tidal discharge at inlets has produced larger channel cross-sections and prograding ebb-tidal deltas. For example, the ebb delta at Barataria Pass has built seaward > 2??2 km since the 1880s. Shoreline erosion and an increasing bay tidal prism also facilitated the formation of new inlets. Four major lithofacies characterize the Barataria coast ebb-tidal deltas and associated sedimentary environments. These include a proximal delta facies composed of massive to laminated, fine grey-brown to pale yellow sand and a distal delta facies consisting of thinly laminated, grey to pale yellow sand and silty sand with mud layers. The higher energy proximal delta deposits contain a greater percentage of sand (75-100%) compared with the distal delta sediments (60-80%). Associated sedimentary units include a nearshore facies consisting of horizontally laminated, fine to very fine grey sand with mud layers and an offshore facies that is composed of grey to dark grey, laminated sandy silt to silty clay. All facies coarsen upwards except the offshore facies, which fines upwards. An evolutionary model is presented for the stratigraphic development of the ebb-tidal deltas in a regime of increasing tidal energy resulting from coastal land loss and tidal prism growth. Ebb-tidal delta facies prograde over nearshore sediments, which interfinger with offshore facies. The seaward decrease in tidal current velocity of the ebb discharge produces a gradational contact between proximal and distal tidal delta facies. As the tidal discharge increases and the inlet grows in dimensions, the proximal and distal tidal delta facies prograde seawards. Owing to the relatively low gradient of the inner continental shelf, the ebb-tidal delta lithosome is presently no more than 5 m thick and is generally only 2-3 m in thickness. The ebb delta sediment is sourced from deepening of the inlet and the associated channels and from the longshore sediment transport system. The final stage in the model envisages erosion and segmentation of the barrier chain, leading to a decrease in tidal discharge through the former major inlets. This process ultimately results in fine-grained sedimentation seaward of the inlets and the encasement of the ebb-tidal delta lithosome in mud. The ebb-tidal deltas along the Barataria coast are distinguished from most other ebb deltas along sand-rich coasts by their muddy content and lack of large-scale stratification produced by channel cut-and-fills and bar migration. ?? 2004 International Association of Sedimentologists.

Large depressions, thickened terraces, and gravitational deformation in the Ebro River valley (Zaragoza area, NE Spain): Evidence of glauberite and halite interstratal karstification

NASA Astrophysics Data System (ADS)

Guerrero, Jesús; Gutiérrez, Francisco; Galve, Jorge P.

2013-08-01

In the studied reach of the Ebro Valley, the terrace and pediment sediments deposited over glauberite- and halite-bearing evaporites show local thickenings (> 50 m) recording dissolution-induced synsedimentary subsidence. Recent data on the lithostratigraphy of the evaporite sequence allow relating the alluvium thickenings with either halite or glauberite dissolution. The alluvium-filled dissolution basin underlying the youngest terraces (T8-T11) is ascribed to halite karstification; the top of a halite unit approximately 75 m thick is situated 40-15 m below the valley bottom. The thickenings of terrace (T1-T7) and pediment sediments are attributed to interstratal glauberite karstification: (1) Coincidence between the elevation range of the terraces and that of the glauberite-rich unit. Glauberite beds reach 30 and 100 m in single-bed and cumulative thickness, respectively. (2) The exposed bedrock underlying thickened alluvium shows abundant subsidence features indicative of interstratal karstification. The most common structure corresponds to hectometer-scale sag basins with superimposed collapses in the central sector of each basin. The subsided bedrock is frequently transformed into dissolution-collapse breccias showing a complete textural gradation, from crackle packbreccias to chaotic floatbreccias and karstic residues. (3) Paleokarst exposures show evidence of karstification confined to specific beds made up of secondary gypsum after precursory glauberite, partly dissolved and partly replaced. Despite the magnitude of the subsidence recorded by the thickened alluvium and unlike nearby tributaries, the terraces show a continuous and parallel arrangement indicating that the fluvial system was able to counterbalance subsidence by aggradation. A number of kilometer-size flat-bottom depressions have been developed in the valley margin, typically next to and inset into thickened terrace and pediment deposits. The subsidence structures exposed in artificial excavations excavated in the bottom of some depressions and the correlation between the altitudinal distribution of these basins and that of the glauberite-rich unit reveal that subsidence related to interstratal glauberite karstification is the main process involved in their genesis. This research ascribes for the first time the thickenings and deformation of specific terrace levels and pediment levels and the development of large karstic depressions to interstratal karstification of exceptionally thick glauberite units.

The predictability of reported drought events and impacts in the Ebro Basin using six different remote sensing data sets

NASA Astrophysics Data System (ADS)

Linés, Clara; Werner, Micha; Bastiaanssen, Wim

2017-09-01

The implementation of drought management plans contributes to reduce the wide range of adverse impacts caused by water shortage. A crucial element of the development of drought management plans is the selection of appropriate indicators and their associated thresholds to detect drought events and monitor the evolution. Drought indicators should be able to detect emerging drought processes that will lead to impacts with sufficient anticipation to allow measures to be undertaken effectively. However, in the selection of appropriate drought indicators, the connection to the final impacts is often disregarded. This paper explores the utility of remotely sensed data sets to detect early stages of drought at the river basin scale and determine how much time can be gained to inform operational land and water management practices. Six different remote sensing data sets with different spectral origins and measurement frequencies are considered, complemented by a group of classical in situ hydrologic indicators. Their predictive power to detect past drought events is tested in the Ebro Basin. Qualitative (binary information based on media records) and quantitative (crop yields) data of drought events and impacts spanning a period of 12 years are used as a benchmark in the analysis. Results show that early signs of drought impacts can be detected up to 6 months before impacts are reported in newspapers, with the best correlation-anticipation relationships for the standard precipitation index (SPI), the normalised difference vegetation index (NDVI) and evapotranspiration (ET). Soil moisture (SM) and land surface temperature (LST) offer also good anticipation but with weaker correlations, while gross primary production (GPP) presents moderate positive correlations only for some of the rain-fed areas. Although classical hydrological information from water levels and water flows provided better anticipation than remote sensing indicators in most of the areas, correlations were found to be weaker. The indicators show a consistent behaviour with respect to the different levels of crop yield in rain-fed areas among the analysed years, with SPI, NDVI and ET providing again the stronger correlations. Overall, the results confirm remote sensing products' ability to anticipate reported drought impacts and therefore appear as a useful source of information to support drought management decisions.

Thermodynamic changes in mechanochemically synthesized magnesium hydride nanoparticles.

PubMed

Paskevicius, Mark; Sheppard, Drew A; Buckley, Craig E

2010-04-14

The thermodynamic properties of magnesium hydride nanoparticles have been investigated by hydrogen decomposition pressure measurements using the Sieverts technique. A mechanochemical method was used to synthesize MgH(2) nanoparticles (down to approximately 7 nm in size) embedded in a LiCl salt matrix. In comparison to bulk MgH(2), the mechanochemically produced MgH(2) with the smallest particle size showed a small but measurable decrease in the decomposition reaction enthalpy (DeltaH decrease of 2.84 kJ/mol H(2) from DeltaH(bulk) = 74.06 +/- 0.42 kJ/mol H(2) to DeltaH(nano) = 71.22 +/- 0.49 kJ/mol H(2)). The reduction in DeltaH matches theoretical predictions and was also coupled with a similar reduction in reaction entropy (DeltaS decrease of 3.8 J/mol H(2)/K from DeltaS(bulk) = 133.4 +/- 0.7 J/mol H(2)/K to DeltaS(nano) = 129.6 +/- 0.8 J/mol H(2)/K). The thermodynamic changes in the MgH(2) nanoparticle system correspond to a drop in the 1 bar hydrogen equilibrium temperature (T(1 bar)) by approximately 6 degrees C to 276.2 +/- 2.4 degrees C in contrast to the bulk MgH(2) system at 281.8 +/- 2.2 degrees C. The reduction in the desorption temperature is less than that expected from theoretical studies due to the decrease in DeltaS that acts to partially counteract the effect from the change in DeltaH.

Detection of Staphylococcus aureus Delta-Toxin Production by Whole-Cell MALDI-TOF Mass Spectrometry

PubMed Central

Gagnaire, Julie; Dauwalder, Olivier; Boisset, Sandrine; Khau, David; Freydière, Anne-Marie; Ader, Florence; Bes, Michèle; Lina, Gerard; Tristan, Anne; Reverdy, Marie-Elisabeth; Marchand, Adrienne; Geissmann, Thomas; Benito, Yvonne; Durand, Géraldine; Charrier, Jean-Philippe; Etienne, Jerome; Welker, Martin; Van Belkum, Alex; Vandenesch, François

2012-01-01

The aim of the present study was to detect the Staphylococcus aureus delta-toxin using Whole-Cell (WC) Matrix Assisted Laser Desorption Ionization - Time-of-Flight (MALDI-TOF) mass spectrometry (MS), correlate delta-toxin expression with accessory gene regulator (agr) status, and assess the prevalence of agr deficiency in clinical isolates with and without resistance to methicillin and glycopeptides. The position of the delta-toxin peak in the mass spectrum was identified using purified delta-toxin and isogenic wild type and mutant strains for agr-rnaIII, which encodes delta-toxin. Correlation between delta-toxin production and agr RNAIII expression was assessed by northern blotting. A series of 168 consecutive clinical isolates and 23 unrelated glycopeptide-intermediate S. aureus strains (GISA/heterogeneous GISA) were then tested by WC-MALDI-TOF MS. The delta-toxin peak was detected at 3005±5 Thomson, as expected for the naturally formylated delta toxin, or at 3035±5 Thomson for its G10S variant. Multivariate analysis showed that chronicity of S. aureus infection and glycopeptide resistance were significantly associated with delta-toxin deficiency (p = 0.048; CI 95%: 1.01–10.24; p = 0.023; CI 95%: 1.20–12.76, respectively). In conclusion, the S. aureus delta-toxin was identified in the WC-MALDI-TOF MS spectrum generated during routine identification procedures. Consequently, agr status can potentially predict infectious complications and rationalise application of novel virulence factor-based therapies. PMID:22792394

Delta smelt: Life history and decline of a once abundant species in the San Francisco Estuary

USGS Publications Warehouse

Moyle, Peter B.; Brown, Larry R.; Durand, John R; Hobbs, James A.

2016-01-01

This paper reviews what has been learned about Delta Smelt and its status since the publication of The State of Bay-Delta Science, 2008 (Healey et al. 2008). The Delta Smelt is endemic to the upper San Francisco Estuary. Much of its historic habitat is no longer available and remaining habitat is increasingly unable to sustain the population. As a listed species living in the central node of California’s water supply system, Delta Smelt has been the focus of a large research effort to understand causes of decline and identify ways to recover the species. Since 2008, a remarkable record of innovative research on Delta Smelt has been achieved, which is summarized here. Unfortunately, research has not prevented the smelt’s continued decline, which is the result of multiple, interacting factors. A major driver of decline is change to the Delta ecosystem from water exports, resulting in reduced outflows and high levels of entrainment in the large pumps of the South Delta. Invasions of alien species, encouraged by environmental change, have also played a contributing role in the decline. Severe drought effects have pushed Delta Smelt to record low levels in 2014–2015. The rapid decline of the species and failure of recovery efforts demonstrate an inability to manage the Delta for the “co-equal goals” of maintaining a healthy ecosystem and providing a reliable water supply for Californians. Diverse and substantial management actions are needed to preserve Delta Smelt.

Vulnerability and risk of deltaic social-ecological systems exposed to multiple hazards.

PubMed

Hagenlocher, Michael; Renaud, Fabrice G; Haas, Susanne; Sebesvari, Zita

2018-08-01

Coastal river deltas are hotspots of global change impacts. Sustainable delta futures are increasingly threatened due to rising hazard exposure combined with high vulnerabilities of deltaic social-ecological systems. While the need for integrated multi-hazard approaches has been clearly articulated, studies on vulnerability and risk in deltas either focus on local case studies or single hazards and do not apply a social-ecological systems perspective. As a result, vulnerabilities and risks in areas with strong social and ecological coupling, such as coastal deltas, are not fully understood and the identification of risk reduction and adaptation strategies are often based on incomplete assumptions. To overcome these limitations, we propose an innovative modular indicator library-based approach for the assessment of multi-hazard risk of social-ecological systems across and within coastal deltas globally, and apply it to the Amazon, Ganges-Brahmaputra-Meghna (GBM), and Mekong deltas. Results show that multi-hazard risk is highest in the GBM delta and lowest in the Amazon delta. The analysis reveals major differences between social and environmental vulnerability across the three deltas, notably in the Mekong and the GBM deltas where environmental vulnerability is significantly higher than social vulnerability. Hotspots and drivers of risk vary spatially, thus calling for spatially targeted risk reduction and adaptation strategies within the deltas. Ecosystems have been identified as both an important element at risk as well as an entry point for risk reduction and adaptation strategies. Copyright © 2018. Published by Elsevier B.V.

On the theory of thermometric titration.

PubMed

Piloyan, G O; Dolinina, Y V

1974-09-01

The general equation defining the change in solution temperature DeltaT during a thermometric titration is DeltaT = T - T(0) = - AV 1 + BV where A and B are constants, V is the volume of titrant used to produce temperature T, and T(0) is the initial temperature. There is a linear relation between the inverse values of DeltaT and V: 1 Delta T = - a V - b where a = 1/A and b = B/A, both a and b being constants. A linear relation between DeltaT and V is usually a special case of this general relation, and is valid only over a narrow range of V. Graphs of 1/DeltaTvs. 1/V are more suitable for practical calculations than the usual graphs of DeltaTvs. V.

The Undiscovered Country: How Many Low-Delta-V Near-Earth Objects Remain to be Found?

NASA Astrophysics Data System (ADS)

Elvis, Martin; Ranjan, Sukrit; Galache, Jose Luis

2014-11-01

Low delta-v near-Earth objects (NEOs) are of great interest as targets for science and human missions, for possible retrieval to cis-lunar space and as potential resource targets for both exploration and commercial uses. This interest stems from the exponential nature of the rocket equation that imposes a harsh mass penalty on any mission to a higher delta-v. We have compared the known NEO population from the IAU Minor Planet Center (MPC) with the NEOSSat-1 model residence times for the NEO population (Greenstreet & Gladman, 2012) to assess how many undiscovered NEOs there are as a function of H magnitude and delta-v. We find that the median of known NEOs is at lower delta-v (7.3 km/s) than the model population (9.8 km/s), suggesting a bias toward detecting lower delta-v NEOs. To the precision of our data, which is as low as 40% for the 300-500 m diameter (D) objects, the bulk of the larger D>300 m NEOs have been found from delta-v<10.3 km/s. However in the 50 < D < 300 m range there are tens of thousands of delta-v < 10.3 km/s to be found. We examine the total number of undiscovered NEOs as a function of delta-v and find that to find at least 100 now unknown NEOs requires a threshold delta-v of 5.7 km/s, while to find at least 1000 of them requires a threshold delta-v of 6.2 km/s. These numbers can be used to determine mission delta-v requirements for a given number of suitable targets, that will likely be restricted by other criteria (size, composition, spin state) to a few percent of the total population.

Temperature and vital effect controls on Bamboo coral (Isididae) isotopegeochemistry: A test of the "lines method"

DOE Office of Scientific and Technical Information (OSTI.GOV)

Hill, T M; Spero, H J; Guilderson, T P

Deep-sea bamboo corals hold promise as long-term climatic archives, yet little information exists linking bamboo coral geochemistry to measured environmental parameters. This study focuses on a suite of 10 bamboo corals collected from the Pacific and Atlantic basins (250-2136 m water depth) to investigate coral longevity, growth rates, and isotopic signatures. Calcite samples for stable isotopes and radiocarbon were collected from the base the corals, where the entire history of growth is recorded. In three of the coral specimens, samples were also taken from an upper branch for comparison. Radiocarbon and growth band width analyses indicate that the skeletal calcitemore » precipitates from ambient dissolved inorganic carbon and that the corals live for 150-300 years, with extension rates of 9-128 {micro}m/yr. A linear relationship between coral calcite {delta}{sup 18}O and {delta}{sup 13}C indicates that the isotopic composition is influenced by vital effects ({delta}{sup 18}O:{delta}{sup 13}C slope of 0.17-0.47). As with scleractinian deep-sea corals, the intercept from a linear regression of {delta}{sup 18}O versus {delta}{sup 13}C is a function of temperature, such that a reliable paleotemperature proxy can be obtained, using the 'lines method.' Although the coral calcite {delta}{sup 18}O:{delta}{sup 13}C slope is maintained throughout the coral base ontogeny, the branches and central cores of the bases exhibit {delta}{sup 18}O:{delta}{sup 13}C values that are shifted far from equilibrium. We find that a reliable intercept value can be derived from the {delta}{sup 18}O:{delta}{sup 13}C regression of multiple samples distributed throughout one specimen or from multiple samples within individual growth bands.« less

Potential exposure of larval and juvenile delta smelt to dissolved pesticides in the Sacramento-San Joaquin Delta, California

USGS Publications Warehouse

Kuivila, K.M.; Moon, G.E.

2004-01-01

The San Francisco Estuary is critical habitat for delta smelt Hypomesus transpacificus, a fish whose abundance has declined greatly since 1983 and is now listed as threatened. In addition, the estuary receives drainage from the Central Valley, an urban and agricultural region with intense and diverse pesticide usage. One possible factor of the delta smelt population decline is pesticide toxicity during vulnerable larval and juvenile stages, but pesticide concentrations are not well characterized in delta smelt spawning and nursery habitat. The objective of this study was to estimate the potential exposure of delta smelt during their early life stages to dissolved pesticides. For 3 years (1998-2000), water samples from the Sacramento-San Joaquin Delta were collected during April-June in coordination with the California Department of Fish and Game's delta smelt early life stage monitoring program. Samples were analyzed for pesticides using solid-phase extraction and gas chromatography/mass spectrometry. Water samples contained multiple pesticides, ranging from 2 to 14 pesticides in each sample. In both 1999 and 2000, elevated concentrations of pesticides overlapped in time and space with peak densities of larval and juvenile delta smelt. In contrast, high spring outflows in 1998 transported delta smelt away from the pesticide sampling sites so that exposure could not be estimated. During 2 years, larval and juvenile delta smelt were potentially exposed to a complex mixture of pesticides for a minimum of 2-3 weeks. Although the measured concentrations were well below short-term (96-h) LC50 values for individual pesticides, the combination of multiple pesticides and lengthy exposure duration could potentially have lethal or sublethal effects on delta smelt, especially during early larval development.

Isotopic compositions and sources of nitrate in ground water from western Salt River Valley, Arizona

USGS Publications Warehouse

Gellenbeck, D.J.

1994-01-01

Isotopic and chemical compositions of ground water from western Salt River Valley near Phoenix, Arizona, were used to develop identification tech- niques for sources of nitrate in ground water. Four possible sources of nitrate were studied: dairies and feedlots, sewage-treatment plants, agricultural activities, and natural source. End members that represent these sources were analyzed for a variety of chemical and isotopic constituents; contents of the end-member and the ground water were compared to identify nitrate from these sources. Nitrate from dairies and feedlots was identified by delta 15N values higher than +9.0 per mil. Nitrate from sewage treatment plants was identified by some chemical constituents and values of delta 15N, delta 34S, delta 7Li, and delta 11B that were lighter than the values determined for ground water not affected by sewage-treatment plants. Nitrate from agricultural activities was identified by delta 15N, 3H, and delta 34S compositions. Natural nitrate derived from decomposing plants and accumulated by biological fixation was identified by delta 15N values that range between +2 and +8 per mil. In addition to identifying nitrate sources, some chemical and isotopic charabteristics of ground water were determined on the basis of data collected during this study. Concentrations of major ions, lithium, and boron and delta 7Li, delta 11B, 3H, delta D, and delta 18O data identify ground water in different geographic regions in the study area. These differences probably are related to different sources of ground water, geochemical processes, or geologic deposits. The Luke salt body and a geothermal anomaly alter the chemical and isotopic content of some ground water.

Quantifying protein microstructure and electrostatic effects on the change in Gibbs free energy of binding in immobilized metal affinity chromatography.

PubMed

Pathange, Lakshmi P; Bevan, David R; Zhang, Chenming

2008-03-01

Electrostatic forces play a major role in maintaining both structural and functional properties of proteins. A major component of protein electrostatics is the interactions between the charged or titratable amino acid residues (e.g., Glu, Lys, and His), whose pK(a) (or the change of the pK(a)) value could be used to study protein electrostatics. Here, we report the study of electrostatic forces through experiments using a well-controlled model protein (T4 lysozyme) and its variants. We generated 10 T4 lysozyme variants, in which the electrostatic environment of the histidine residue was perturbed by altering charged and neutral amino acid residues at various distances from the histidine (probe) residue. The electrostatic perturbations were theoretically quantified by calculating the change in free energy (DeltaDeltaG(E)) using Coulomb's law. On the other hand, immobilized metal affinity chromatography (IMAC) was used to quantify these perturbations in terms of protein binding strength or change in free energy of binding (DeltaDeltaG(B)), which varies from -0.53 to 0.99 kcal/mol. For most of the variants, there is a good correlation (R(2) = 0.97) between the theoretical DeltaDeltaG(E) and experimental DeltaDeltaG(B) values. However, there are three deviant variants, whose histidine residue was found to be involved in site-specific interactions (e.g., ion pair and steric hindrance), which were further investigated by molecular dynamics simulation. This report demonstrates that the electrostatic (DeltaDeltaG(Elec)) and microstructural effects (DeltaDeltaG(Micro)) in a protein can be quantified by IMAC through surface histidine mediated protein-metal ion interaction and that the unique microstructure around a histidine residue can be identified by identifying the abnormal binding behaviors during IMAC.

Heparan sulfate in perlecan promotes mouse atherosclerosis: roles in lipid permeability, lipid retention, and smooth muscle cell proliferation.

PubMed

Tran-Lundmark, Karin; Tran, Phan-Kiet; Paulsson-Berne, Gabrielle; Fridén, Vincent; Soininen, Raija; Tryggvason, Karl; Wight, Thomas N; Kinsella, Michael G; Borén, Jan; Hedin, Ulf

2008-07-03

Heparan sulfate (HS) has been proposed to be antiatherogenic through inhibition of lipoprotein retention, inflammation, and smooth muscle cell proliferation. Perlecan is the predominant HS proteoglycan in the artery wall. Here, we investigated the role of perlecan HS chains using apoE null (ApoE0) mice that were cross-bred with mice expressing HS-deficient perlecan (Hspg2(Delta3/Delta3)). Morphometry of cross-sections from aortic roots and en face preparations of whole aortas revealed a significant decrease in lesion formation in ApoE0/Hspg2(Delta3/Delta3) mice at both 15 and 33 weeks. In vitro, binding of labeled mouse triglyceride-rich lipoproteins and human LDL to total extracellular matrix, as well as to purified proteoglycans, prepared from ApoE0/Hspg2(Delta3/Delta3) smooth muscle cells was reduced. In vivo, at 20 minutes influx of human (125)I-LDL or mouse triglyceride-rich lipoproteins into the aortic wall was increased in ApoE0/Hspg2(Delta3/Delta3) mice compared to ApoE0 mice. However, at 72 hours accumulation of (125)I-LDL was similar in ApoE0/Hspg2(Delta3/Delta3) and ApoE0 mice. Immunohistochemistry of lesions from ApoE0/Hspg2(Delta3/Delta3) mice showed decreased staining for apoB and increased smooth muscle alpha-actin content, whereas accumulation of CD68-positive inflammatory cells was unchanged. We conclude that the perlecan HS chains are proatherogenic in mice, possibly through increased lipoprotein retention, altered vascular permeability, or other mechanisms. The ability of HS to inhibit smooth muscle cell growth may also influence development as well as instability of lesions.

Subsidence driving forces in large Delta Plain

NASA Astrophysics Data System (ADS)

Grall, C.; Steckler, M. S.

2017-12-01

Recent studies show large variability in subsidence rates among large delta plains that directly impact coastal management of these highly vulnerable environments. Observations show both significant spatial variation in subsidence across each delta, as well as large differences in magnitude between different deltas. This variability raises the question of what are the driving forces that control subsidence in large delta plains that this study aims to address. Subsidence and sediment compaction is studied in 4 end-member large Delta Plains: the Ganges-Brahmaputra, the Mekong, the Mississippi and the Nile. Those large delta plains drastically contrast in subsidence rates (from values to several mm/yr to several cm/yr), in the nature of the sediment (notably in clay and organic matter content), and in the volume of sediment supplied by the large rivers that feed those coastal environments. The volume of sediment deposited in each delta plain during the Holocene is estimated and the compaction of the underlying sedimentary column is computed by using a backstripping approach. Sediment compaction behaviors are defined accordingly to the observed clay, silt and organic contents, and the rate of subsidence associated with compaction is determined. Results suggest that about 2/3 of observed Holocene subsidence may be associated with the mechanical and chemical compaction of the underlying sedimentary column due to the load of sediment deposited. The compaction appears to be significantly higher in delta plains characterized by a high sediment input and a high organic matter and clay content. Thus, the observed subsidence rates in the (muddy) Mekong delta appear to be one order of magnitude higher than other delta plains. In contrast, subsidence rates are modest in the Ganges-Brahmaputra, the Mississippi and the Nile delta plains, except away from the major rivers where deposits are muddier.