SWMPr: An R Package for Retrieving, Organizing, and ...

EPA Pesticide Factsheets

The System-Wide Monitoring Program (SWMP) was implemented in 1995 by the US National Estuarine Research Reserve System. This program has provided two decades of continuous monitoring data at over 140 fixed stations in 28 estuaries. However, the increasing quantity of data provided by the monitoring network has complicated broad-scale comparisons between systems and, in some cases, prevented simple trend analysis of water quality parameters at individual sites. This article describes the SWMPr package that provides several functions that facilitate data retrieval, organization, andanalysis of time series data in the reserve estuaries. Previously unavailable functions for estuaries are also provided to estimate rates of ecosystem metabolism using the open-water method. The SWMPr package has facilitated a cross-reserve comparison of water quality trends and links quantitative information with analysis tools that have use for more generic applications to environmental time series. The manuscript describes a software package that was recently developed to retrieve, organize, and analyze monitoring data from the National Estuarine Research Reserve System. Functions are explained in detail, including recent applications for trend analysis of ecosystem metabolism.

[Effects of Long-term Implementation of the Flow-Sediment Regulation Scheme on Grain and Clay Compositions of Inshore Sediments in the Yellow River Estuary].

PubMed

Wang, Miao-miao; Sun, Zhi-gao; Lu, Xiao-ning; Wang, Wei; Wang, Chuan-yuan

2015-04-01

Based on the laser particle size and X-ray diffraction (XRD) analysis, 28 sediment samples collected from the inshore region of the Yellow River estuary in October 2013 were determined to discuss the influence of long-term implementation of the flow-sediment regulation scheme (FSRS, initiated in 2002) on the distributions of grain size and clay components (smectite, illite, kaolinite and chlorite) in sediments. Results showed that, after the FSRS was implemented for more than 10 years, although the proportion of sand in inshore sediments of the Yellow River estuary was higher (average value, 23.5%) than those in sediments of the Bohai Sea and the Yellow River, silt was predominated (average value, 59.1%) and clay components were relatively low (average value, 17.4%). The clay components in sediments of the inshore region in the Yellow River estuary were close with those in the Yellow River. The situation was greatly changed due to the implementation of FSRS since 2002, and the clay components were in the order of illite > smectite > chlorite > kaolinite. This study also indicated that, compared to large-scale investigation in Bohai Sea, the local study on the inshore region of the Yellow River estuary was more favorable for revealing the effects of long-term implementation of the FSRS on sedimentation environment of the Yellow River estuary.

Climate Ready Estuaries Progress Reports

EPA Pesticide Factsheets

Climate Ready Estuaries has supported adaptation activities in National Estuary Programs since 2008. In 2012, the program partnered with 23 NEPs, completed a pilot project with water utilities, and held workshops. Download annual reports from 2009-2012.

Text only version of the National Estuary Program Story Map

EPA Pesticide Factsheets

Since 1987, the EPA National Estuary Program (NEP) has made a unique and lasting contribution to protecting and restoring our nation's estuaries, delivering environmental and public health benefits to the American people.

40 CFR 35.9010 - Definitions.

Code of Federal Regulations, 2011 CFR

2011-07-01

... ASSISTANCE Financial Assistance for the National Estuary Program § 35.9010 Definitions. Aggregate costs. The... the estuary. Annual work plan. The plan, developed by the Management Conference each year, which... an estuary in the NEP. National Program Assistance Agreements. Assistance Agreements approved by the...

40 CFR 35.9010 - Definitions.

Code of Federal Regulations, 2014 CFR

2014-07-01

... ASSISTANCE Financial Assistance for the National Estuary Program § 35.9010 Definitions. Aggregate costs. The... the estuary. Annual work plan. The plan, developed by the Management Conference each year, which... an estuary in the NEP. National Program Assistance Agreements. Assistance Agreements approved by the...

40 CFR 35.9010 - Definitions.

Code of Federal Regulations, 2013 CFR

2013-07-01

... ASSISTANCE Financial Assistance for the National Estuary Program § 35.9010 Definitions. Aggregate costs. The... the estuary. Annual work plan. The plan, developed by the Management Conference each year, which... an estuary in the NEP. National Program Assistance Agreements. Assistance Agreements approved by the...

40 CFR 35.9010 - Definitions.

Code of Federal Regulations, 2012 CFR

2012-07-01

... ASSISTANCE Financial Assistance for the National Estuary Program § 35.9010 Definitions. Aggregate costs. The... the estuary. Annual work plan. The plan, developed by the Management Conference each year, which... an estuary in the NEP. National Program Assistance Agreements. Assistance Agreements approved by the...

40 CFR 35.9010 - Definitions.

Code of Federal Regulations, 2010 CFR

2010-07-01

... ASSISTANCE Financial Assistance for the National Estuary Program § 35.9010 Definitions. Aggregate costs. The... the estuary. Annual work plan. The plan, developed by the Management Conference each year, which... an estuary in the NEP. National Program Assistance Agreements. Assistance Agreements approved by the...

Implementing a voluntary, nonregulatory approach to nitrogen management in Tampa Bay, FL: a public/private partnership.

PubMed

Greening, H; DeGrove, B D

2001-11-14

Participants in the Tampa Bay Estuary Program have agreed to adopt nitrogen-loading targets for Tampa Bay based on the water-quality and related light requirements of underwater seagrasses. Based on modeling results, it appears that light levels can be maintained at necessary levels by "holding the line" at existing nitrogen loadings; however, this goal may be difficult to achieve given the 20% increase in the watershed"s human population and associated 7% increase in nitrogen loading that are projected to occur over the next 20 years. To address the long-term management of nitrogen sources, a nitrogen management consortium of local electric utilities, industries, and agricultural interests, as well as local governments and regulatory agency representatives, has developed a consortium action plan to address the target load reduction needed to "hold the line" at 1992 to 1994 levels. To date, implemented and planned projects collated in the Consortium Action Plan meet and exceed the agreed-upon nitrogen-loading reduction goal. An example of the success of the private partnership aspect of this program can be seen in three phosphate fertilizer mining and manufacturing companies with facilities located on Tampa Bay. These companies are participants in the Estuary Program and the Nitrogen Management Consortium to provide support and input for a program that advocates voluntary, nonregulatory cooperation to reach environmental goals.

40 CFR 35.9000 - Applicability.

Code of Federal Regulations, 2010 CFR

2010-07-01

... ASSISTANCE Financial Assistance for the National Estuary Program § 35.9000 Applicability. This subpart..., organizations, and individuals for pollution abatement and control programs under the National Estuary Program...

40 CFR 35.9000 - Applicability.

Code of Federal Regulations, 2011 CFR

2011-07-01

... ASSISTANCE Financial Assistance for the National Estuary Program § 35.9000 Applicability. This subpart..., organizations, and individuals for pollution abatement and control programs under the National Estuary Program...

40 CFR 35.9000 - Applicability.

Code of Federal Regulations, 2014 CFR

2014-07-01

... ASSISTANCE Financial Assistance for the National Estuary Program § 35.9000 Applicability. This subpart..., organizations, and individuals for pollution abatement and control programs under the National Estuary Program...

40 CFR 35.9000 - Applicability.

Code of Federal Regulations, 2012 CFR

2012-07-01

... ASSISTANCE Financial Assistance for the National Estuary Program § 35.9000 Applicability. This subpart..., organizations, and individuals for pollution abatement and control programs under the National Estuary Program...

40 CFR 35.9000 - Applicability.

Code of Federal Regulations, 2013 CFR

2013-07-01

... ASSISTANCE Financial Assistance for the National Estuary Program § 35.9000 Applicability. This subpart..., organizations, and individuals for pollution abatement and control programs under the National Estuary Program...

Vulnerability Assessments in Support of the Climate Ready Estuaries Program: A Novel Approach Using Expert Judgment, Volume I: Results for the San Francisco Estuary Partnership (External Review Draft)

EPA Science Inventory

As part of the Climate Ready Estuaries (CRE) program, the Global Change Research Program (GCRP) in the National Center for Environmental Assessment, Office of Research and Development at the U.S. Environmental Protection Agency has prepared this draft report exploring a new metho...

Vulnerability Assessments in Support of the Climate Ready Estuaries Program: A Novel Approach Using Expert Judgment, Volume I: Results for the San Francisco Estuary Partnership (Final Report)

EPA Science Inventory

As part of the Climate Ready Estuaries (CRE) program, the Global Change Research Program (GCRP) in the National Center for Environmental Assessment, Office of Research and Development at the U.S. Environmental Protection Agency has prepared this draft report exploring a new metho...

A Climate Ready Estuaries Vulnerability Assessment

EPA Science Inventory

The purpose of the the Climate Ready Estuaries program is to build capacity in the National Estuary Programs (NEPs) for local leadership and expertise to adapt to the effects of climate change through a joint effort with the NEPs and EPA.

Background

Identifying and organizing objectives across the 28 National Estuary Programs

EPA Science Inventory

The National Estuary Program (NEP), established in 1987 by amendments to the Clean Water Act, is intended to support local communities to restore, protect and manage estuaries of national significance. Currently there a 28 NEPs spread widely across the U.S. and its territories. E...

EPA Awards Restore America's Estuaries with nearly $4 million to manage Southeast New England grant program

EPA Pesticide Factsheets

The U.S. Environmental Protection Agency today announced a major grant to Restore America’s Estuaries under the Southeast New England Program (SNEP) of $3,945,172. With this grant, Restore America’s Estuaries will manage a competitive sub-award gr

Implementing the Biological Condition Gradient Framework for Management of Estuaries and Coasts

EPA Science Inventory

The Biological Condition Gradient (BCG) is an scientific approach to consistent bioassessment that was developed by the U.S. EPA’s Office of Water (Office of Science and Technology) and partners. This report describes implementation of the BCG framework for estuaries and coasts ...

SAN FRANCISCO BAY ESTUARY PROJECT 2002 IR POST-CCMP NEP REPORT

EPA Science Inventory

The San Francisco Bay Estuary Project Implementation Review (IR) summarizes the progress and challenges ahead for the Project through examination of it activities in relation to the CCMP. Contents of the IR include: CCMP Implementation which has the status of efforts on Priority ...

Local Estuary Programs

EPA Pesticide Factsheets

This page provides information about Local Individual Estuary Programs including links to their NEP homepages, social media, Comprehensive Conservation and Management Plans, and state of the bay reports.

The status of fish conservation in South African estuaries.

PubMed

Whitfield, A K; Cowley, P D

2010-06-01

Estuary-dependent fish species are defined as those taxa whose populations would be adversely affected by the loss of estuarine habitats. Of the 155 species regularly recorded in South African estuaries, only 32 (21%) are completely dependent on these systems, but this figure increases to 103 species (66%) if partially dependent taxa are included in the analysis. The conservation of fishes in estuaries on the subcontinent is threatened by a number of factors, including habitat degradation, disruption of essential ecological processes, hydrological manipulations, environmental pollution, overexploitation due to fishing activities and, more recently, climate change and the effects of introduced aquatic animals. Although major threats to fishes are usually linked to environmental degradation, there is increasing evidence that the stocks of certain fish species are overexploited or collapsed. Fish conservation and fisheries management does not depend on the implementation of a single action, but rather the co-ordination of a detailed plan, often in a multidisciplinary context. Some examples of innovative means of contributing to estuarine fish conservation in a South African context include the determination and implementation of the ecological freshwater requirements for estuaries, the zoning of estuaries for different uses and the recognition that the maintenance of ecological processes are vital to aquatic ecosystem health. Apart from the designation of protected areas, the main direct means of conserving fish species and stocks include habitat conservation, controls over fishing methods, effort, efficiency and seasonality, pollution control and the prevention of artificial manipulation of estuary mouths. Since becoming a democracy in 1994, environmental legislation, policy and institutional arrangements in South Africa have undergone some major changes, which, if fully implemented, will be very positive for fish conservation in estuaries on the subcontinent.

Collaborative Potential between National Estuary Programs ...

EPA Pesticide Factsheets

Estuaries are among the most productive ecosystems in the world, providing unique habitat for freshwater and marine species as well as valuable social and economic benefits. The wealth of ecosystem goods and services from estuaries has led to growth and development of human communities in adjacent areas and an increase in human activities that can adversely affect water quality and critical habitat. Managing for sustainable estuaries requires a balance of environmental concerns with community social and economic values. This has created an opportunity to leverage Environmental Protection Agency (EPA) scientific knowledge and tools with National Estuary Program (NEP) planning and management expertise to address environmental challenges in important estuarine ecosystems. The non-regulatory National Estuary Program (NEP) was outlined in the Clean Water Act to provide stakeholders an opportunity to monitor and manage ‘nationally significant’ estuaries. Currently there are 28 estuaries in the NEP, broadly distributed across the Atlantic, Pacific and Gulf Coasts, and in Puerto Rico. The local NEP management conferences must address a variety of environmental issues, from water quality and natural resources to coastal and watershed development. While the underlying objectives of each NEP are quite similar, each has unique landscapes, land uses, waterbodies, habitats, biological resources, economies and social culture. Consequently, the effects and severity of anthr

Pollutant fate and spatio-temporal variability in the choptank river estuary: Factors influencing water quality

USGS Publications Warehouse

Whitall, D.; Hively, W.D.; Leight, A.K.; Hapeman, C.J.; McConnell, L.L.; Fisher, T.; Rice, C.P.; Codling, E.; McCarty, G.W.; Sadeghi, A.M.; Gustafson, A.; Bialek, K.

2010-01-01

Restoration of the Chesapeake Bay, the largest estuary in the United States, is a national priority. Documentation of progress of this restoration effort is needed. A study was conducted to examine water quality in the Choptank River estuary, a tributary of the Chesapeake Bay that since 1998 has been classified as impaired waters under the Federal Clean Water Act. Multiple water quality parameters (salinity, temperature, dissolved oxygen, chlorophyll a) and analyte concentrations (nutrients, herbicide and herbicide degradation products, arsenic, and copper) were measured at seven sampling stations in the Choptank River estuary. Samples were collected under base flow conditions in the basin on thirteen dates between March 2005 and April 2008. As commonly observed, results indicate that agriculture is a primary source of nitrate in the estuary and that both agriculture and wastewater treatment plants are important sources of phosphorus. Concentrations of copper in the lower estuary consistently exceeded both chronic and acute water quality criteria, possibly due to use of copper in antifouling boat paint. Concentrations of copper in the upstream watersheds were low, indicating that agriculture is not a significant source of copper loading to the estuary. Concentrations of herbicides (atrazine, simazine, and metolachlor) peaked during early-summer, indicating a rapid surface-transport delivery pathway from agricultural areas, while their degradation products (CIAT, CEAT, MESA, and MOA) appeared to be delivered via groundwater transport. Some in-river processing of CEAT occurred, whereas MESA was conservative. Observed concentrations of herbicide residues did not approach established levels of concern for aquatic organisms. Results of this study highlight the importance of continued implementation of best management practices to improve water quality in the estuary. This work provides a baseline against which to compare future changes in water quality and may be used to design future monitoring programs needed to assess restoration strategy efficacy.

DOE Office of Scientific and Technical Information (OSTI.GOV)

Johnson, G.; Thom, R.; Whiting, A.

Habitat restoration in the Columbia River estuary (CRE) is an important off-site mitigation action in the 2000 Biological Opinion (BiOp), an operation of the Federal Columbia River Power System. The CRE, defined as the tidally influenced stretch of river from the mouth to Bonneville Dam 146 miles upstream, is part of the migration pathway for anadromous fish in the Columbia Basin, including salmon listed under the Endangered Species Act (ESA). Salmon in various stages of life, from fry to adults, use tidal channels and wetlands in the CRE to feed, find refuge from predators, and transition physiologically from freshwater tomore » saltwater. Over the last 100 years, however, the area of some wetland habitats has decreased by as much as 70% because of dike and levee building, flow regulation, and other activities. In response to the decline in available habitat, the BiOp's Reasonable and Prudent Alternative (RPA) included mandates to 'develop a plan addressing the habitat needs of juvenile salmon and steelhead in the estuary' (RPA Action 159) and 'develop and implement an estuary restoration program with a goal of protecting and enhancing 10,000 acres of tidal wetlands and other key habitats' (RPA Action 160). To meet Action 159 and support Action 160, this document develops a science-based approach designed to improve ecosystem functions through habitat restoration activities in the CRE. The CRE habitat restoration program's goal and principles focus on habitat restoration projects in an ecosystem context. Since restoration of an entire ecosystem is not generally practical, individual habitat restoration projects have the greatest likelihood of success when they are implemented with an ecosystem perspective. The program's goal is: Implementation of well-coordinated, scientifically sound projects designed to enhance, protect, conserve, restore, and create 10,000 acres of tidal wetlands and other key habitats to aid rebuilding of ESA-listed salmon populations and native species using the CRE. The program's underlying principles are: (1) projects are founded on the best available ecological restoration science, implemented in an ecosystem context, and developed with the intent to restore relevant ecological processes; (2) projects incorporate adaptive management practices with testable hypotheses to track ecological responses to a given restoration effort; and (3) projects are implemented in a coordinated, open process and scientific results from monitoring and evaluation are communicated widely and readily accessible. With this goal and these principles in mind, we developed an approach for CRE habitat restoration. The intent of this document is to provide a scientific basis and implementation guidelines for a habitat restoration program designed to improve ecosystem functions and enhance juvenile salmonid survival in the CRE. The stepwise approach to CRE habitat restoration outlined is somewhat general and broad because the available scientific information is incomplete, e.g., juvenile salmon usage of various CRE wetland habitats. As new data become available, a more specific, detailed plan than was possible here can be produced as an outgrowth of this document. In conclusion, this document provides a scientific basis and implementation guidelines for a habitat restoration program designed to improve ecosystem functions and enhance juvenile salmonid survival in the CRE. As more experience is gained with CRE habitat restoration and scientific uncertainties are resolved, this document should be used as a basis for a detailed habitat restoration plan that specifically addresses (1) which habitat types offer the greatest ecological benefit to salmon, (2) the location of potential sites that if restored would likely provide these habitat types, and (3) how and when the restoration work should be done. This document supports the use of adaptive management so that all elements of salmonid habitat restoration actions in the CRE are under continual evaluation and revision at both the project and program levels. Lessons learned from current and proposed habitat restoration projects need to be applied to all future work, such as the Estuary Partnership's habitat restoration program and the U.S. Army Corps of Engineers General Investigation Study for the CRE, to ensure the most effective use of resources and the best possible long term environment for salmonid growth and survival in the CRE.« less

40 CFR 35.9060 - Maximum Federal share.

Code of Federal Regulations, 2011 CFR

2011-07-01

... STATE AND LOCAL ASSISTANCE Financial Assistance for the National Estuary Program § 35.9060 Maximum... development of a comprehensive conservation and management plan for the estuary as specified in the estuary...

40 CFR 35.9060 - Maximum Federal share.

Code of Federal Regulations, 2013 CFR

2013-07-01

... STATE AND LOCAL ASSISTANCE Financial Assistance for the National Estuary Program § 35.9060 Maximum... development of a comprehensive conservation and management plan for the estuary as specified in the estuary...

40 CFR 35.9060 - Maximum Federal share.

Code of Federal Regulations, 2010 CFR

2010-07-01

... STATE AND LOCAL ASSISTANCE Financial Assistance for the National Estuary Program § 35.9060 Maximum... development of a comprehensive conservation and management plan for the estuary as specified in the estuary...

40 CFR 35.9060 - Maximum Federal share.

Code of Federal Regulations, 2012 CFR

2012-07-01

... STATE AND LOCAL ASSISTANCE Financial Assistance for the National Estuary Program § 35.9060 Maximum... development of a comprehensive conservation and management plan for the estuary as specified in the estuary...

40 CFR 35.9060 - Maximum Federal share.

Code of Federal Regulations, 2014 CFR

2014-07-01

... STATE AND LOCAL ASSISTANCE Financial Assistance for the National Estuary Program § 35.9060 Maximum... development of a comprehensive conservation and management plan for the estuary as specified in the estuary...

PEER REVIEW OF PECONIC ESTUARY PROGRAM HYDRODYNAMIC AND WATER QUALITY (EUTROPHICATION) MODEL

EPA Science Inventory

The Peconic Estuary is located on the eastern end of Long Island, New York. Under the Federal Clean Water Act, the Peconic Estuary was named an "Estuary of National Significance" in 1992. Because of its high concentration of rare, threatened and endangered species and habitats,...

PECONIC ESTUARY: AN INVENTORY OF SUBMERGED AQUATIC VEGETATION AND HARDENED SHORELINES FOR THE PECONIC ESTUARY, NEW YORK

EPA Science Inventory

Executive Summary The Peconic Estuary Program (PEP) is interested in the extent of eelgrass and other submerged aquatic vegetation and in documenting changes in the shorelines of the Peconic Estuary. The Suffolk County Department of Health Services' Office of Ecology provided fun...

Designing a monitoring program to estimate estuarine survival of anadromous salmon smolts: simulating the effect of sample design on inference

USGS Publications Warehouse

Romer, Jeremy D.; Gitelman, Alix I.; Clements, Shaun; Schreck, Carl B.

2015-01-01

A number of researchers have attempted to estimate salmonid smolt survival during outmigration through an estuary. However, it is currently unclear how the design of such studies influences the accuracy and precision of survival estimates. In this simulation study we consider four patterns of smolt survival probability in the estuary, and test the performance of several different sampling strategies for estimating estuarine survival assuming perfect detection. The four survival probability patterns each incorporate a systematic component (constant, linearly increasing, increasing and then decreasing, and two pulses) and a random component to reflect daily fluctuations in survival probability. Generally, spreading sampling effort (tagging) across the season resulted in more accurate estimates of survival. All sampling designs in this simulation tended to under-estimate the variation in the survival estimates because seasonal and daily variation in survival probability are not incorporated in the estimation procedure. This under-estimation results in poorer performance of estimates from larger samples. Thus, tagging more fish may not result in better estimates of survival if important components of variation are not accounted for. The results of our simulation incorporate survival probabilities and run distribution data from previous studies to help illustrate the tradeoffs among sampling strategies in terms of the number of tags needed and distribution of tagging effort. This information will assist researchers in developing improved monitoring programs and encourage discussion regarding issues that should be addressed prior to implementation of any telemetry-based monitoring plan. We believe implementation of an effective estuary survival monitoring program will strengthen the robustness of life cycle models used in recovery plans by providing missing data on where and how much mortality occurs in the riverine and estuarine portions of smolt migration. These data could result in better informed management decisions and assist in guidance for more effective estuarine restoration projects.

GEO-CAPE Coastal Ocean Ecosystem Dynamics White Paper ...

EPA Pesticide Factsheets

The Clean Water Act protects all navigable waters in the United States (CWA, 1988). The objective of the CWA is to "restore and maintain the chemical, physical, and biological integrity of the Nation's waters." This Federal mandate authorizes states, tribes, and U.S. territories, with guidance and oversight from the U.S. Environmental Protection Agency (EPA), to develop and implement water quality standards to protect the human and aquatic life uses of the Nation’s waterways. Water quality standards include designated uses, defined as the services that a water body supports such as drinking water, aquatic life, harvestable species, and recreation. These standards under the CWA Section 304(a) are applicable within state waters, defined as less than 3 nautical miles from shore. Therefore, a majority of research by the EPA addresses near-shore coastal waters within 3 nautical miles, estuaries and lakes where applicable water quality regulation could be implemented. Policy makers and environmental managers in EPA’s program and regional offices need tools enabling them to assess the sustainability of watershed ecosystems, and the services they provide, under current and future land use practices. The typical 1km resolution and current Case 1 algorithms of SeaWiFS, MODIS, and VIIRS provide limited assessments of near-shore coastal waters, estuaries and lakes. It has proven difficult to adequately resolve and derive products in smaller estuaries or waters in proxim

40 CFR 35.9070 - National program assistance agreements.

Code of Federal Regulations, 2013 CFR

2013-07-01

... FEDERAL ASSISTANCE STATE AND LOCAL ASSISTANCE Financial Assistance for the National Estuary Program § 35... award of NEP funds for work that has broad applicability to estuaries of national significance. These...

40 CFR 35.9070 - National program assistance agreements.

Code of Federal Regulations, 2014 CFR

2014-07-01

... FEDERAL ASSISTANCE STATE AND LOCAL ASSISTANCE Financial Assistance for the National Estuary Program § 35... award of NEP funds for work that has broad applicability to estuaries of national significance. These...

40 CFR 35.9070 - National program assistance agreements.

Code of Federal Regulations, 2010 CFR

2010-07-01

... FEDERAL ASSISTANCE STATE AND LOCAL ASSISTANCE Financial Assistance for the National Estuary Program § 35... award of NEP funds for work that has broad applicability to estuaries of national significance. These...

40 CFR 35.9070 - National program assistance agreements.

Code of Federal Regulations, 2012 CFR

2012-07-01

... FEDERAL ASSISTANCE STATE AND LOCAL ASSISTANCE Financial Assistance for the National Estuary Program § 35... award of NEP funds for work that has broad applicability to estuaries of national significance. These...

40 CFR 35.9070 - National program assistance agreements.

Code of Federal Regulations, 2011 CFR

2011-07-01

... FEDERAL ASSISTANCE STATE AND LOCAL ASSISTANCE Financial Assistance for the National Estuary Program § 35... award of NEP funds for work that has broad applicability to estuaries of national significance. These...

40 CFR 35.9020 - Planning targets.

Code of Federal Regulations, 2014 CFR

2014-07-01

... STATE AND LOCAL ASSISTANCE Financial Assistance for the National Estuary Program § 35.9020 Planning... expenditures by each estuary program and are directly related to the activities that are to be carried out by...

40 CFR 35.9020 - Planning targets.

Code of Federal Regulations, 2013 CFR

2013-07-01

... STATE AND LOCAL ASSISTANCE Financial Assistance for the National Estuary Program § 35.9020 Planning... expenditures by each estuary program and are directly related to the activities that are to be carried out by...

40 CFR 35.9020 - Planning targets.

Code of Federal Regulations, 2010 CFR

2010-07-01

... STATE AND LOCAL ASSISTANCE Financial Assistance for the National Estuary Program § 35.9020 Planning... expenditures by each estuary program and are directly related to the activities that are to be carried out by...

40 CFR 35.9020 - Planning targets.

Code of Federal Regulations, 2011 CFR

2011-07-01

... STATE AND LOCAL ASSISTANCE Financial Assistance for the National Estuary Program § 35.9020 Planning... expenditures by each estuary program and are directly related to the activities that are to be carried out by...

40 CFR 35.9020 - Planning targets.

Code of Federal Regulations, 2012 CFR

2012-07-01

... STATE AND LOCAL ASSISTANCE Financial Assistance for the National Estuary Program § 35.9020 Planning... expenditures by each estuary program and are directly related to the activities that are to be carried out by...

DOE Office of Scientific and Technical Information (OSTI.GOV)

Johnson, Gary E.

The Estuary/Ocean Subgroup (EOS) is part of the research, monitoring, and evaluation (RME) effort that the Action Agencies (Bonneville Power Administration, U.S. Army Corps of Engineers, U.S. Bureau of Reclamation) developed in response to obligations arising from the Endangered Species Act as applied to operation of the Federal Columbia River Power System (FCRPS). The goal of the EOS project is to facilitate activities of the estuary/ocean RME subgroup as it coordinates design and implementation of federal RME in the lower Columbia River and estuary. The EOS is one of multiple work groups in the federal research, monitoring, and evaluation (RME)more » effort developed in response to responsibilities arising from the Endangered Species Act as a result of operation of the FCRPS. The EOS is tasked by NOAA Fisheries and the Action Agencies to design and coordinate implementation of the federal RME plan for the lower Columbia River and estuary, including the plume.« less

40 CFR 35.9065 - Limitations.

Code of Federal Regulations, 2012 CFR

2012-07-01

... ASSISTANCE Financial Assistance for the National Estuary Program § 35.9065 Limitations. (a) Management... the estuary for which the work is proposed. (b) Elements of annual workplans. Annual Work Plans to be prepared by estuary Management Conferences must be reviewed by the Regional Administrator before final...

40 CFR 35.9065 - Limitations.

Code of Federal Regulations, 2010 CFR

2010-07-01

... ASSISTANCE Financial Assistance for the National Estuary Program § 35.9065 Limitations. (a) Management... the estuary for which the work is proposed. (b) Elements of annual workplans. Annual Work Plans to be prepared by estuary Management Conferences must be reviewed by the Regional Administrator before final...

40 CFR 35.9065 - Limitations.

Code of Federal Regulations, 2011 CFR

2011-07-01

... ASSISTANCE Financial Assistance for the National Estuary Program § 35.9065 Limitations. (a) Management... the estuary for which the work is proposed. (b) Elements of annual workplans. Annual Work Plans to be prepared by estuary Management Conferences must be reviewed by the Regional Administrator before final...

40 CFR 35.9065 - Limitations.

Code of Federal Regulations, 2013 CFR

2013-07-01

... ASSISTANCE Financial Assistance for the National Estuary Program § 35.9065 Limitations. (a) Management... the estuary for which the work is proposed. (b) Elements of annual workplans. Annual Work Plans to be prepared by estuary Management Conferences must be reviewed by the Regional Administrator before final...

40 CFR 35.9065 - Limitations.

Code of Federal Regulations, 2014 CFR

2014-07-01

... ASSISTANCE Financial Assistance for the National Estuary Program § 35.9065 Limitations. (a) Management... the estuary for which the work is proposed. (b) Elements of annual workplans. Annual Work Plans to be prepared by estuary Management Conferences must be reviewed by the Regional Administrator before final...

MOBILE BAY NATIONAL ESTUARY PROGRAM COMPREHENSIVE CONSERVATION AND MANAGEMENT PLAN

EPA Science Inventory

In simplest terms, an estuary is defined as an area where rivers meet the sea. They are transitional zones where freshwater rivers meet tidally influenced marine waters. Estuaries are considered environmentally and economically important because of their exceptional biological di...

PECONIC ESTUARY PROGRAM COMPREHENSIVE CONSERVATION AND MANAGEMENT PLAN

EPA Science Inventory

The Peconic Estuary, situated between the North and South Forks of eastern Long Island, New York, consists of more than 100 distinct bays, harbors, embayments, and tributaries. The area surrounding the Peconic Estuary's watershed is rich in rolling farmland, scenic beaches and cr...

Salinity-oriented environmental flows for keystone species in the Modaomen Estuary, China

NASA Astrophysics Data System (ADS)

Zhang, Menglu; Cui, Baoshan; Zhang, Zhiming; Jiang, Xuelian

2017-12-01

Rapid development and urbanization in recent years have contributed to a reduction in freshwater discharge and intensified saltwater intrusion in the Pearl River Delta. This comprises a significant threat to potable water supplies and overall estuary ecosystem health. In this study, the environmental flows of the Modaomen Estuary, one of the estuaries of the Pearl River Delta in China, were determined based on the salinity demand of keystone species and the linear relationship between river discharge and estuarine salinity. The estimated minimum and optimal annual environmental flows in the Modaomen Estuary were 116.8 × 109 m3 and 273.8 × 109 m3, respectively, representing 59.3% and 139.0% of the natural runoff. Water quality assessments in recent years indicate that the environmental flows have not been satisfied most of the time, particularly the optimal environmental flow, despite implementation of various water regulations since 2005. Therefore, water regulations and wetland network recoveries based on rational environmental flows should be implemented to alleviate saltwater intrusion and for the creation of an ideal estuarine habitat.

Vulnerability Assessments in Support of the Climate Ready Estuaries Program: A Novel Approach Using Expert Judgement, Volume II: Results for the Massachusetts Bays Program (External Review Draft)

EPA Science Inventory

As part of the Climate Ready Estuaries (CRE) program, the Global Change Research Program (GCRP) in the National Center for Environmental Assessment, Office of Research and Development at the U.S. Environmental Protection Agency has prepared a report exploring a new methodology fo...

Vulnerability Assessments in Support of the Climate Ready Estuaries Program: A Novel Approach Using Expert Judgement, Volume II: Results for the Massachusetts Bays Program (Final Report)

EPA Science Inventory

As part of the Climate Ready Estuaries (CRE) program, the Global Change Research Program (GCRP) in the National Center for Environmental Assessment, Office of Research and Development at the U.S. Environmental Protection Agency has prepared a report exploring a new methodology fo...

INDEX OF ESTUARINE BENTHIC INTEGRITY FOR GULF OF MEXICO ESTUARIES

EPA Science Inventory

A benthic index for northern Gulf of Mexico estuaries has been developed and successfully validated by the Environmental Monitoring and Assessment Program for Estuaries (EMAP-E) in the Louisianian Province. The benthic index is a useful indicator of estuarine condition that provi...

Collaborative Potential between National Estuary Programs and Coastal EPA Laboratories

EPA Science Inventory

Estuaries are among the most productive ecosystems in the world, providing unique habitat for freshwater and marine species as well as valuable social and economic benefits. The wealth of ecosystem goods and services from estuaries has led to growth and development of human commu...

ENVIRONMENTAL MONITORING AND ASSESSMENT PROGRAM: CURRENT STATUS OF VIRGINIAN PROVINCE (U.S.) ESTUARIES

EPA Science Inventory

Monitoring of indicators of the ecological condition of bays, tidal rivers, and estuaries within the Virginian Biogeographic Province (Cape Cod, Massachusetts to Cape Henry, Virginia) was conducted annually by the U.S. EPA's Environmental Monitoring and Assessment Program (EMAP) ...

RELATIONS OF FISH AND SHELLFISH DISTRIBUTIONS TO HABITAT AND WATER QUALITY IN THE MOBILE BAY ESTUARY, USA

EPA Science Inventory

The Mobile Bay estuary provides rich habitat for many fish and shellfish, including those identified as economically and ecologically important. The National Estuary Program has focused on restoration of degraded estuarine habitat on which these species depend. To support this ...

REGIONAL TRANSPORT AND SECONDARY SPREAD OF INVASIVE SPECIES ACROSS PACIFIC ESTUARIES

EPA Science Inventory

San Francisco Bay is considered to be the most highly invaded estuary in North America, and is suspected of acting as a local source pool for secondary invasions of other Pacific estuaries. With support from the Regional Applied Research Effort programs in EPA Regions 9 and 10, ...

MONITORING CHANGES IN THE ESTUARIES OF THE UNITED STATES: THE ENVIRONMENTAL MONITORING AND ASSESSMENT PROGRAM

EPA Science Inventory

The purpose of the Environmental Monitoring and Assessment Program/Estuaries (EMAP-E) is to estimate the current status, extent, changes, and trends in ecological indicators of the condition of the nation's coastal resources (intertidal, subtidal, and offshore) on a regional and ...

Facilitating political decisions using species distribution models to assess restoration measures in heavily modified estuaries.

PubMed

Heuner, Maike; Weber, Arnd; Schröder, Uwe; Kleinschmit, Birgit; Schröder, Boris

2016-09-15

The European Water Framework Directive requires a good ecological potential for heavily modified water bodies. This standard has not been reached for most large estuaries by 2015. Management plans for estuaries fall short in linking implementations between restoration measures and underlying spatial analyses. The distribution of emergent macrophytes - as an indicator of habitat quality - is here used to assess the ecological potential. Emergent macrophytes are capable of settling on gentle tidal flats where hydrodynamic stress is comparatively low. Analyzing their habitats based on spatial data, we set up species distribution models with 'elevation relative to mean high water', 'mean bank slope', and 'length of bottom friction' from shallow water up to the vegetation belt as key predictors representing hydrodynamic stress. Effects of restoration scenarios on habitats were assessed applying these models. Our findings endorse species distribution models as crucial spatial planning tools for implementing restoration measures in modified estuaries. Copyright © 2016 Elsevier Ltd. All rights reserved.

Assessment of eutrophication in estuaries: Pressure-state-response and source apportionment

Treesearch

David Whitall; Suzanne Bricker

2006-01-01

The National Estuarine Eutrophication Assessment (NEEA) Update Program is a management oriented program designed to improve monitoring and assessment efforts through the development of type specific classification of estuaries that will allow improved assessment methods and development of analytical and research models and tools for managers which will help guide and...

LOWER COLUMBIA RIVER ESTUARY PROGRAM COMPREHENSIVE CONSERVATION AND MANAGEMENT PLAN

EPA Science Inventory

An estuary is the area where the fresh water of a river meets the salt water of an ocean. In the Columbia River system, this occurs in the lower 46 river miles. In an estuary, the river has a direct, natural connection with the open sea. This transition from fresh to salt water c...

A GUIDE TO MAPPING INTERTIDAL EELGRASS AND NONVEGETATED HABITATS IN ESTUARIES OF THE PACIFIC NORTHWEST USA

EPA Science Inventory

This document provides technical guidance for planning and implementing the production of aerial photomaps of intertidal vegetative habitats in coastal estuaries of the Pacific Northwest USA (PNW). The focus is on methods of documenting the intertidal distribution of the seagras...

Patterns and trends in sediment toxicity in the San Francisco Estuary

USGS Publications Warehouse

Anderson, B.; Hunt, J.; Phillips, B.; Thompson, B.; Lowe, S.; Taberski, K.; Scott, Carr R.

2007-01-01

Widespread sediment toxicity has been documented throughout the San Francisco Estuary since the mid-1980s. Studies conducted in the early 1990s as part of the Bay Protection and Toxic Cleanup Program (BPTCP), and more recently as part of the Regional Monitoring Program (RMP) have continued to find sediment toxicity in the Estuary. Results of these studies have shown a number of sediment toxic hotspots located at selected sites in the margins of the Estuary. Recent RMP monitoring has indicated that the magnitude and frequency of sediment toxicity is greater in the winter wet season than in the summer dry season, which suggests stormwater inputs are associated with sediment toxicity. Additionally, spatial trends in sediment toxicity data indicate that toxic sediments are associated with inputs from urban creeks surrounding the Estuary, and from Central Valley rivers entering the northern Estuary via the Delta. Sediment toxicity has been correlated with a number of contaminants, including selected metals, PAHs and organochlorine pesticides. While toxicity identification evaluations (TIEs) suggest that metals are the primary cause of sediment toxicity to bivalve embryos; TIEs conducted with amphipods have been inconclusive. ?? 2006 Elsevier Inc. All rights reserved.

40 CFR 35.9040 - Application for assistance.

Code of Federal Regulations, 2010 CFR

2010-07-01

... ASSISTANCE STATE AND LOCAL ASSISTANCE Financial Assistance for the National Estuary Program § 35.9040..., studies, modeling, and other technical work necessary for the development of a CCMP for the estuary. Each...

40 CFR 35.9040 - Application for assistance.

Code of Federal Regulations, 2011 CFR

2011-07-01

... ASSISTANCE STATE AND LOCAL ASSISTANCE Financial Assistance for the National Estuary Program § 35.9040..., studies, modeling, and other technical work necessary for the development of a CCMP for the estuary. Each...

40 CFR 35.3150 - Intended Use Plan (IUP).

Code of Federal Regulations, 2014 CFR

2014-07-01

...) The IUP must also contain a list of the nonpoint source and national estuary protection activities... projects or programs to be funded as eligible activities for nonpoint sources and estuary protection...

40 CFR 35.9040 - Application for assistance.

Code of Federal Regulations, 2014 CFR

2014-07-01

... ASSISTANCE STATE AND LOCAL ASSISTANCE Financial Assistance for the National Estuary Program § 35.9040..., studies, modeling, and other technical work necessary for the development of a CCMP for the estuary. Each...

40 CFR 35.3150 - Intended Use Plan (IUP).

Code of Federal Regulations, 2013 CFR

2013-07-01

...) The IUP must also contain a list of the nonpoint source and national estuary protection activities... projects or programs to be funded as eligible activities for nonpoint sources and estuary protection...

40 CFR 35.9040 - Application for assistance.

Code of Federal Regulations, 2012 CFR

2012-07-01

... ASSISTANCE STATE AND LOCAL ASSISTANCE Financial Assistance for the National Estuary Program § 35.9040..., studies, modeling, and other technical work necessary for the development of a CCMP for the estuary. Each...

40 CFR 35.3150 - Intended Use Plan (IUP).

Code of Federal Regulations, 2012 CFR

2012-07-01

...) The IUP must also contain a list of the nonpoint source and national estuary protection activities... projects or programs to be funded as eligible activities for nonpoint sources and estuary protection...

40 CFR 35.3150 - Intended Use Plan (IUP).

Code of Federal Regulations, 2011 CFR

2011-07-01

...) The IUP must also contain a list of the nonpoint source and national estuary protection activities... projects or programs to be funded as eligible activities for nonpoint sources and estuary protection...

40 CFR 35.9040 - Application for assistance.

Code of Federal Regulations, 2013 CFR

2013-07-01

... ASSISTANCE STATE AND LOCAL ASSISTANCE Financial Assistance for the National Estuary Program § 35.9040..., studies, modeling, and other technical work necessary for the development of a CCMP for the estuary. Each...

How the National Estuary Programs Address Environmental Issues

EPA Pesticide Factsheets

Estuaries face many challenges including, alteration of natural hydrologic flows, aquatic nuisance species, climate change, declines in fish and wildlife populations, habitat loss and degradation, nutrient loads, pathogens, stormwater and toxics.

A Community Runs Through It: 30 Years of Collaboration in the St. Louis River Estuary

EPA Science Inventory

When participants in the 2016 St Louis River Summit identified their roles and described their interactions with the estuary on the 50-year timeline, they were illustrating the community that built and is now implementing the Remedial Action Plan. From its inception, the Great La...

Determining the effects of freshwater inflow on benthic macrofauna in the Caloosahatchee Estuary, Florida.

PubMed

Palmer, Terence A; Montagna, Paul A; Chamberlain, Robert H; Doering, Peter H; Wan, Yongshan; Haunert, Kathleen M; Crean, Daniel J

2016-07-01

Florida legislation requires determining and implementing an appropriate range and frequency of freshwater inflows that will sustain a fully functional estuary. Changes in inflow dynamics to the Caloosahatchee Estuary, Florida have altered salinity regimes that, in turn, have altered the ecological integrity of the estuary. The purpose of this current project is to determine how changes in freshwater inflows affect water quality, and in turn, benthic macrofauna, spatially within the Caloosahatchee Estuary and between multiyear wet and dry periods. Thirty-four benthic species were identified as being indicator species for salinity zones, and the estuary was divided into 4 zones based on differences in community structure within the estuary. Community structure had the highest correlations with water quality parameters that were common indicators of freshwater conditions resulting from inflows. A significant relationship between salinity and diversity occurs both spatially and temporally because of increased numbers of marine species as salinities increase. A salinity-based model was used to estimate inflow during wet and dry periods for each of the macrofauna community zones. The approach used here (identifying bioindicators and community zones with corresponding inflow ranges) is generic and will be useful for developing targets for managing inflow in estuaries worldwide. Integr Environ Assess Manag 2016;12:529-539. © 2015 SETAC. © 2015 SETAC.

Scavenging rate ecoassay: a potential indicator of estuary condition.

PubMed

Porter, Augustine G; Scanes, Peter R

2015-01-01

Monitoring of estuary condition is essential due to the highly productive and often intensely impacted nature of these ecosystems. Assessment of the physico-chemical condition of estuaries is expensive and difficult due to naturally fluctuating water quality and biota. Assessing the vigour of ecosystem processes is an alternative method with potential to overcome much of the variability associated with physico-chemical measures. Indicators of estuary condition should have small spatial and temporal variability, have a predictable response to perturbation and be ecologically relevant. Here, we present tests of the first criterion, the spatio-temporal variability of a potential ecoassay measuring the rate of scavenging in estuaries. We hypothesised that the proposed scavenging ecoassay would not vary significantly among A) sites in an estuary, B) trips separated by weeks, or C) days in a trip. Because not all habitats are present in all estuaries, this test was undertaken in two habitats. When conducted over bare substrate there were occasional significant differences, but no discernible patterns, within levels of the experiment. When conducted over vegetated substrate, days within a trip did not vary significantly, but later trips experienced greater scavenging. This scavenging ecoassay shows potential as a tool for assessing the condition of estuarine ecosystems, and further exploration of this protocol is warranted by implementation in estuaries across a gradient of anthropogenic stress.

Estuary 2100 Project, Phase 2: Building Partnerships for Resilient Watersheds

EPA Pesticide Factsheets

Information about the SFBWQP Estuary 2100 Project, Phase 2: Building Partnerships for Resilient Watersheds, part of an EPA competitive grant program to improve SF Bay water quality focused on restoring impaired waters and enhancing aquat

Climate Ready Estuaries Partner Projects Map

EPA Pesticide Factsheets

CRE partners with the National Estuary Program to develop climate change projects in coastal U.S. areas, such as bays and harbors; to develop adaptation action plans, identify climate impacts and indicators, and more. This map shows project locations.

Water quality variability in San Francisco Bay, Some gGeneral lessons from 1996 sampling: 1996 annual report, San Francisco estuary regional monitoring program for trace substances

USGS Publications Warehouse

Cloern, J.E.; Cole, B.E.; Edmunds, J.L.; Baylosis, J.I.

1997-01-01

This report describes the results from the 1996 Regional Monitoring Program for Trace Substances (RMP). It is the fourth Annual Report from the RMP which began in 1993 and attempts to synthesize the most obvious data patterns from the last four years. This report includes data from Base Program monitoring activities, as well as results of Pilot and Special Studies conducted or completed in 1996. Additionally, several articles contributed by RMP investigators and others, are included. These articles provide perspective and insight on important contaminant issues identified by the RMP. This summary addresses which kinds of pollutants measured by the RMP appear to be at levels that warrant concern, what kinds of trends may be discerned, and which stations have consistently shown elevated contaminant levels. The goals or general objectives of the RMP are: 1. To obtain high quality baseline data describing the concentrations of toxic and potentially toxic trace elements and organic contaminants in the water and sediment of the San Francisco Estuary. 2. To determine seasonal and annual trends in chemical and biological water quality in the San Francisco Estuary. 3. To continue to develop a data set that can be used to determine long-term trends in the concentrations of toxic and potentially toxic trace elements and organic contaminants in the water and sediments of the San Francisco Estuary. 4. To determine whether water quality and sediment quality in the Estuary at large are in compliance with objectives established by the Basin Plan (the regulatory planning document used by the Regional Water Quality Control Board). 5. To provide a database on water and sediment quality in the Estuary which is compatible with data being developed in other ongoing studies, including wasteload allocation studies and model development, sediment quality objectives development, in-bay studies of dredged material disposal, Interagency Ecological Program (IEP) water quality studies, primary productivity studies, local effects biomonitoring programs, and state and federal mussel watch programs.

Estuaries as Filters: The Role of Tidal Marshes in Trace Metal Removal

PubMed Central

Teuchies, Johannes; Vandenbruwaene, Wouter; Carpentier, Roos; Bervoets, Lieven; Temmerman, Stijn; Wang, Chen; Maris, Tom; Cox, Tom J. S.; Van Braeckel, Alexander; Meire, Patrick

2013-01-01

Flux calculations demonstrate that many estuaries are natural filters for trace metals. Yet, the underlying processes are poorly investigated. In the present study, it was hypothesized that intertidal marshes contribute significantly to the contaminant filter function of estuaries. Trace metal concentrations and sediment characteristics were measured along a transect from the subtidal, over an intertidal flat and marsh to a restored marsh with controlled reduced tide. Metal concentrations in the intertidal and restored marsh were found to be a factor two to five higher than values in the subtidal and intertidal flat sediments. High metal concentrations and high accretion rates indicate a high metal accumulation capacity of the intertidal marshes. Overbank sedimentation in the tidal marshes of the entire estuary was calculated to remove 25% to 50% of the riverine metal influx, even though marshes comprise less than 8% of the total surface of the estuary. In addition, the large-scale implementation of planned tidal marsh restoration projects was estimated to almost double the trace metal storage capacity of the present natural tidal marshes in the estuary. PMID:23950927

Estuary 2100 Project, Phase 1: Resilient Watersheds for a Changing Climate

EPA Pesticide Factsheets

Information about the SFBWQP Estuary 2100 Project, Phase 1: Resilient Watersheds for a Changing Climate , part of an EPA competitive grant program to improve SF Bay water quality focused on restoring impaired waters and enhancing aquatic resources.

A PROBABILISTIC SURVEY OF SEDIMENT TOXICITY IN WEST COAST ESTUARIES

EPA Science Inventory

A probabalistic survey of coastal condition assessment was conducted in 1999 by participants in US EPA's Environmental Monitoring and Assessment Program (EMAP). The survey targeted estuaries along the outer coasts of Washington, Oregon and California, including the lower Columbi...

Scavenging Rate Ecoassay: A Potential Indicator of Estuary Condition

PubMed Central

Porter, Augustine G.; Scanes, Peter R.

2015-01-01

Monitoring of estuary condition is essential due to the highly productive and often intensely impacted nature of these ecosystems. Assessment of the physico-chemical condition of estuaries is expensive and difficult due to naturally fluctuating water quality and biota. Assessing the vigour of ecosystem processes is an alternative method with potential to overcome much of the variability associated with physico-chemical measures. Indicators of estuary condition should have small spatial and temporal variability, have a predictable response to perturbation and be ecologically relevant. Here, we present tests of the first criterion, the spatio-temporal variability of a potential ecoassay measuring the rate of scavenging in estuaries. We hypothesised that the proposed scavenging ecoassay would not vary significantly among A) sites in an estuary, B) trips separated by weeks, or C) days in a trip. Because not all habitats are present in all estuaries, this test was undertaken in two habitats. When conducted over bare substrate there were occasional significant differences, but no discernible patterns, within levels of the experiment. When conducted over vegetated substrate, days within a trip did not vary significantly, but later trips experienced greater scavenging. This scavenging ecoassay shows potential as a tool for assessing the condition of estuarine ecosystems, and further exploration of this protocol is warranted by implementation in estuaries across a gradient of anthropogenic stress. PMID:26024225

Evaluation of Cumulative Ecosystem Response to Restoration Projects in the Lower Columbia River and Estuary, 2010

DOE Office of Scientific and Technical Information (OSTI.GOV)

Johnson, Gary E.; Diefenderfer, Heida L.; Thom, Ronald M.

This is the seventh and final annual report of a project (2004–2010) addressing evaluation of the cumulative effects of habitat restoration actions in the 235-km-long lower Columbia River and estuary. The project, called the Cumulative Effects (CE) study, was conducted for the U.S. Army Corps of Engineers Portland District by a collaboration of research agencies led by the Pacific Northwest National Laboratory. We achieved the primary goal of the CE study to develop a methodology to evaluate the cumulative effects of habitat actions in the Columbia Estuary Ecosystem Restoration Program. We delivered 1) standard monitoring protocols and methods to prioritizemore » monitoring activities; 2) the theoretical and empirical basis for a CE methodology using levels-of-evidence; 3) evaluations of cumulative effects using ecological relationships, geo-referenced data, hydrodynamic modeling, and meta-analyses; and 4) an adaptive management process to coordinate and coalesce restoration efforts in the LCRE. A solid foundation has been laid for future comprehensive evaluations of progress made by the Columbia Estuary Ecosystem Restoration Program to understand, conserve, and restore ecosystems in the lower Columbia River and estuary.« less

Patterns of water-quality variability in San Francisco Bay during the first six years of the regional monitoring program, 1993-1998

USGS Publications Warehouse

Cloern, J.E.; Cole, B.E.; Edmunds, J.L.; Schraga, T.S.; Arnsberg, A.

2000-01-01

Monitoring Results presents data from the Status and Trends portion of the 1998 San Francisco Estuary Regional Monitoring Program for Trace Substances (RMP). A list of reports on Pilot and Special Studies, as well as other RMP related activities can be found at the end of this document. These reports provide perspective and insight on important contaminant issues identified by the RMP, and they describe results from projects that took advantage of RMP field operations. For a summary of the conditions of the Estuary see The Pulse . A print copy may also be ordered by contacting the San Francisco Estuary Institute (SFEI). In 1998, the San Francisco Regional Water Quality Control Board (Regional Board) and seventy-three federal, state, and local agencies and companies participated in the RMP as funders and service providers (Table 1.1). Participants also assist in directing the Program through input or participation on the Steering and Technical Review Committees. The RMP’s overall goal is to provide data and interpretation that helps to address certain information needs of the Regional Board. In general, these efforts fall under five major objectives which provide a framework for efforts to respond to more specific management questions. 1. Describe patterns and trends in contaminant concentration and distribution. 2. Describe general sources and loadings of contamination to the Estuary. 3. Measure contaminant effects on selected parts of the Estuary ecosystem. 4. Compare monitoring information to relevant water quality objectives and other guidelines. 5. Synthesize and distribute information from a range of sources to present a more complete picture of the sources, distribution, fates, and effects of contaminants in the Estuary ecosystem.

DOE Office of Scientific and Technical Information (OSTI.GOV)

Johnson, Gary E.; Diefenderfer, Heida L.

This annual report is a deliverable for fiscal year 2007 (FY07) for Project 2002-077-00, Facilitation of the Estuary/Ocean Subgroup (EOS). The EOS is part of the research, monitoring, and evaluation (RME) effort of the Action Agencies (Bonneville Power Administration, U.S. Army Corps of Engineers, U.S. Bureau of Reclamation) developed in response to responsibilities arising from the Endangered Species Act as a result of operation of the Federal Columbia River Power System (FCRPS). The goal of the EOS project is to facilitate activities of the estuary/ocean RME subgroup as it coordinates design and implementation of federal RME in the lower Columbiamore » River and estuary. In FY07, EOS project accomplishments included (1) subgroup meetings; (2) participation in the estuary work group of the Pacific Northwest Aquatic Monitoring Partnership; (3) project management via the project tracking system, PISCES; (4) quarterly project status reports; and (5) a major revision to the Estuary RME Plan (new version September 2007) based on comments by EOS members and invited reviewers.« less

DOE Office of Scientific and Technical Information (OSTI.GOV)

Johnson, Gary E.; Diefenderfer, Heida L.

This annual report is a deliverable for fiscal year 2007 (FY07) for Project 2002-077-00, Facilitation of the Estuary/Ocean Subgroup (EOS). The EOS is part of the research, monitoring, and evaluation (RME) effort the Action Agencies (Bonneville Power Administration, U.S. Army Corps of Engineers, U.S. Bureau of Reclamation) developed in response to responsibilities arising from the Endangered Species Act as a result of operation of the Federal Columbia River Power System (FCRPS). The goal of the EOS project is to facilitate activities of the estuary/ocean RME subgroup as it coordinates design and implementation of federal RME in the lower Columbia Rivermore » and estuary. In FY07, EOS project accomplishments included 1) subgroup meetings; 2) participation in the estuary work group of the Pacific Northwest Aquatic Monitoring Partnership; 3) project management via the project tracking system, PISCES; 4) quarterly project status reports; and 5) a major revision to the Estuary RME Plan (new version September 2007) based on comments by EOS members and invited reviewers.« less

Origin, composition and quality of suspended particulate organic matter in relation to freshwater inflow in a South Texas estuary

NASA Astrophysics Data System (ADS)

Lebreton, Benoit; Beseres Pollack, Jennifer; Blomberg, Brittany; Palmer, Terence A.; Adams, Leslie; Guillou, Gaël; Montagna, Paul A.

2016-03-01

South Texas has a semi-arid climate with a large interannual variability of freshwater inflows. This study sought to define how changes in freshwater inflow affect the composition, quantity and quality of suspended particulate organic matter (SPOM) in a South Texas estuary: the Mission-Aransas estuary. The study was implemented 1.5 months after a large rain event in September 2010 and continued for 10 months of drought conditions. The composition of SPOM originating from rivers, the Gulf of Mexico and the estuary were determined using stable isotopes (δ13C, δ15N and δ34S). The quantity and quality of SPOM were assessed using organic carbon content, chlorophyll a concentrations and C/chl a ratios. Our results demonstrated that autochthonous phytoplankton was the dominant component of SPOM in the Mission-Aransas estuary during droughts. Benthic organic matter from local primary producers (i.e., seagrass, salt marsh plants, benthic microalgae) did not influence SPOM composition, either as fresh material or as detritus. A comparison with a positive estuary (i.e., Sabine-Neches estuary, TX) indicates that decreases in freshwater inflow may lead to decreases of terrestrial organic matter inputs and to increase the ratio of autochtonous phytoplanktonic material in SPOM.

A Novel Approach for Evaluation of Water Quality Trends in Gulf Coast Estuaries

EPA Science Inventory

Water quality data form the backbone of management programs aimed at protecting environmental resources. The increasing availability of long-term monitoring data for estuaries can improve detection of temporal and spatial changes in water quality. However, the relatively simple...

Relationships between Concentrations of Phytoplankton Chlorophyll a and Total Nitrogen in Ten U.S. Estuaries

EPA Science Inventory

This presentation focuses on the summertime response of phytoplankton chlorophyll to nitrogen concentrations in the upper water columns of ten U.S. estuaries. Using publicly available data from monitoring programs, regression relationships have been developed between summer surfa...

THE MID-ATLANTIC INTEGRATED ASSESSMENT MAIA - ESTUARIES 1997-1998 SUMMARY REPORT

EPA Science Inventory

During the summers of 1997-98, a consortium of federal and state environmental agencies conducted the Mid-Atlantic Integrated Assessment (MAIA) program to characterize the environmental condition of the four major estuaries in the the mid-Atlantic region of the United States. The...

Hydro-morphological modelling of small, wave-dominated estuaries

NASA Astrophysics Data System (ADS)

Slinger, Jill H.

2017-11-01

Small, intermittently open or closed estuaries are characteristic of the coasts of South Africa, Australia, California, Mexico and many other areas of the world. However, modelling attention has tended to focus on big estuaries that drain large catchments and serve a wide diversity of interests e.g. agriculture, urban settlement, recreation, commercial fishing. In this study, the development of a simple, parametric, system dynamics model to simulate the opening and closure of the mouths of small, wave-dominated estuaries is reported. In the model, the estuary is conceived as a basin with a specific water volume to water level relationship, connected to the sea by a channel of fixed width, but variable sill height. Changes in the form of the basin are not treated in the model, while the dynamics of the mouth channel are central to the model. The magnitude and direction of the flow through the mouth determines whether erosion or deposition of sediment occurs in the mouth channel, influencing the sill height. The model is implemented on the Great Brak Estuary in South Africa and simulations reveal that the raised low water levels in the estuary during spring tide relative to neap tide, are occasioned by the constriction of the tidal flow through the shallow mouth. Freshwater inflows to the estuary are shown to be significant in determining the behaviour of the inlet mouth, a factor often ignored in studies on tidal inlets. Further it is the balance between freshwater inflows and wave events that determines the opening or closure of the mouth of a particular estuary.

Efficacy of single and multi-metric fish-based indices in tracking anthropogenic pressures in estuaries: An 8-year case study.

PubMed

Martinho, Filipe; Nyitrai, Daniel; Crespo, Daniel; Pardal, Miguel A

2015-12-15

Facing a generalized increase in water degradation, several programmes have been implemented for protecting and enhancing the water quality and associated wildlife, which rely on ecological indicators to assess the degree of deviation from a pristine state. Here, single (species number, Shannon-Wiener H', Pielou J') and multi-metric (Estuarine Fish Assessment Index, EFAI) community-based ecological quality measures were evaluated in a temperate estuary over an 8-year period (2005-2012), and established their relationships with an anthropogenic pressure index (API). Single metric indices were highly variable and neither concordant amongst themselves nor with the EFAI. The EFAI was the only index significantly correlated with the API, indicating that higher ecological quality was associated with lower anthropogenic pressure. Pressure scenarios were related with specific fish community composition, as a result of distinct food web complexity and nursery functioning of the estuary. Results were discussed in the scope of the implementation of water protection programmes. Copyright © 2015 Elsevier Ltd. All rights reserved.

A numerical study of local variations in tidal regime of Tagus estuary, Portugal.

PubMed

Dias, João Miguel; Valentim, Juliana Marques; Sousa, Magda Catarina

2013-01-01

Tidal dynamics of shallow estuaries and lagoons is a complex matter that has attracted the attention of a large number of researchers over the last few decades. The main purpose of the present work is to study the intricate tidal dynamics of the Tagus estuary, which states as the largest estuary of the Iberian Peninsula and one of the most important wetlands in Portugal and Europe. Tagus has large areas of low depth and a remarkable geomorphology, both determining the complex propagation of tidal waves along the estuary of unknown manner. A non-linear two-dimensional vertically integrated hydrodynamic model was considered to be adequate to simulate its hydrodynamics and an application developed from the SIMSYS2D model was applied to study the tidal propagation along the estuary. The implementation and calibration of this model revealed its accuracy to predict tidal properties along the entire system. Several model runs enabled the analysis of the local variations in tidal dynamics, through the interpretation of amplitude and phase patterns of the main tidal constituents, tidal asymmetry, tidal ellipses, form factor and tidal dissipation. Results show that Tagus estuary tidal dynamics is extremely dependent on an estuarine resonance mode for the semi-diurnal constituents that induce important tidal characteristics. Besides, the estuarine coastline features and topography determines the changes in tidal propagation along the estuary, which therefore result essentially from a balance between convergence/divergence and friction and advection effects, besides the resonance effects.

A Numerical Study of Local Variations in Tidal Regime of Tagus Estuary, Portugal

PubMed Central

Dias, João Miguel; Valentim, Juliana Marques; Sousa, Magda Catarina

2013-01-01

Tidal dynamics of shallow estuaries and lagoons is a complex matter that has attracted the attention of a large number of researchers over the last few decades. The main purpose of the present work is to study the intricate tidal dynamics of the Tagus estuary, which states as the largest estuary of the Iberian Peninsula and one of the most important wetlands in Portugal and Europe. Tagus has large areas of low depth and a remarkable geomorphology, both determining the complex propagation of tidal waves along the estuary of unknown manner. A non-linear two-dimensional vertically integrated hydrodynamic model was considered to be adequate to simulate its hydrodynamics and an application developed from the SIMSYS2D model was applied to study the tidal propagation along the estuary. The implementation and calibration of this model revealed its accuracy to predict tidal properties along the entire system. Several model runs enabled the analysis of the local variations in tidal dynamics, through the interpretation of amplitude and phase patterns of the main tidal constituents, tidal asymmetry, tidal ellipses, form factor and tidal dissipation. Results show that Tagus estuary tidal dynamics is extremely dependent on an estuarine resonance mode for the semi-diurnal constituents that induce important tidal characteristics. Besides, the estuarine coastline features and topography determines the changes in tidal propagation along the estuary, which therefore result essentially from a balance between convergence/divergence and friction and advection effects, besides the resonance effects. PMID:24312474

Evaluating Ecosystem Services Provided by the Albemarle-Pamlico (NC) Estuary System in Response to Watershed Nitrogen Management

EPA Science Inventory

The Albemarle-Pamlico Watershed and Estuary Study (APWES) is part of the USEPA Ecosystem Services Research Program. The mission of the APWES is to develop ecosystem services science to inform watershed and coastal management decisions in the Albemarle-Pamlico watershed and estuar...

A PROBABILISTIC ASSESSMENT OF BENTHIC CONDITION OF CALIFORNIA ESTUARIES: RESULTS FROM THE NATIONAL COASTAL ASSESSMENT 1999

EPA Science Inventory

As part of the National Coastal Assessment, the Environmental Monitoring and Assessment Program of EPA is conducting a three year evaluation of benthic habitat condition of California estuaries. In 1999, probabilistic sampling for a variety of biotic and abiotic condition indica...

Utilizing Depth of Colonization of Seagrasses to Develop Numeric Water Quality Criteria for Florida Estuaries

EPA Science Inventory

US EPA is working with state and local partners in Florida to develop numeric water quality criteria to protect estuaries from nutrient pollution. Similar to other nutrient management programs in Florida, EPA is considering status of seagrass habitats as an indicator of biologic...

A MORE COST-EFFECTIVE EMAP-ESTUARIES BENTHIC MACROFAUNAL SAMPLING PROTOCOL

EPA Science Inventory

The standard benthic macrofaunal sampling protocol in the U.S. Environmental Protection Agency's Pacific Coast Environmental Monitoring and Assessment Program (EMAP) is to collect a minimum of 30 random benthic samples per reporting unit (e.g., estuary) using a 0.1 m2 grab and to...

Suwannee river basin and estuary integrated science workshop: September 22-24, 2004 Cedar Key, Florida

USGS Publications Warehouse

Katz, Brian; Raabe, Ellen

2004-01-01

In response to the growing number of environmental concerns in the mostly pristine Suwannee River Basin and the Suwannee River Estuary system, the States of Florida and Georgia, the Federal government, and other local organizations have identified the Suwannee River as an ecosystem in need of protection because of its unique biota and important water resources. Organizations with vested interests in the region formed a coalition, the Suwannee Basin Interagency Alliance (SBIA), whose goals are to promote coordination in the identification, management, and scientific knowledge of the natural resources in the basin and estuary. To date, an integrated assessment of the physical, biological, and water resources has not been completed. A holistic, multi-disciplinary approach is being pursued to address the research needs in the basin and estuary and to provide supportive data for meeting management objectives of the entire ecosystem. The USGS is well situated to focus on the larger concerns of the basin and estuary by addressing specific research questions linking water supply and quality to ecosystem function and health across county and state boundaries. A strategic plan is being prepared in cooperation with Federal, State, and local agencies to identify and implement studies to address the most compelling research issues and management questions, and to conduct fundamental environmental monitoring studies. The USGS, Suwannee River Water Management District and the Florida Marine Research Institute are co-sponsoring this scientific workshop on the Suwannee River Basin and Estuary to: Discuss current and past research findings, Identify information gaps and research priorities, and Develop an action plan for coordinated and relevant research activities in the future. This workshop builds on the highly successful basin-wide conference sponsored by the Suwannee Basin Interagency Alliance that was held three years ago in Live Oak, Florida. This years workshop will focus on identifying information needs and priorities and developing partnerships. The USGS is seeking to define the role of the USGS Florida Integrated Science Center (FISC) in conducting integrated research in the Suwannee River Basin, and to establish a cooperative program with other agencies. Participants interested in river, floodplain, springs, estuary, or basin-wide issues are encouraged to attend. Topics for this years workshop include: Water quality and geochemistry: nutrient enrichment, reduction of nutrient loading to ground water, contaminants, and land use, Hydrogeology: interactions among ground water, surface water and ecosystem, modeling, and baseline mapping, Ecosystem dynamics: structure, process, species, and habitats (estuarine, riverine, floodplain, and wetland), and Information management: data sharing, database development, geographic information system (GIS), and basin-wide models.

Lower Columbia River and Estuary Habitat Monitoring Study, 2011 - Final Report

DOE Office of Scientific and Technical Information (OSTI.GOV)

Borde, Amy B.; Kaufmann, Ronald M.; Cullinan, Valerie I.

The Ecosystem Monitoring Program is a collaborative effort between the Lower Columbia River Estuary Partnership (LCREP), University of Washington, Wetland Ecosystem Team (UW), US Geological Survey, Water Science Center (USGS), National Oceanic and Atmospheric Administration, National Marine Fisheries Service (NOAA-Fisheries, hereafter NOAA), and Pacific Northwest National Laboratory, Marine Sciences Laboratory (PNNL). The goal of the program is to conduct emergent wetland monitoring aimed at characterizing salmonid habitats in the lower Columbia River and estuary (LCRE) from the mouth of the estuary to Bonneville Dam (Figure 1). This is an ecosystem based monitoring program focused on evaluating status and trends inmore » habitat and reducing uncertainties regarding these ecosystems to ultimately improve the survival of juvenile salmonids through the LCRE. This project comprehensively assesses habitat, fish, food web, and abiotic conditions in the lower river, focusing on shallow water and vegetated habitats used by juvenile salmonids for feeding, rearing and refugia. The information is intended to be used to guide management actions associated with species recovery, particularly that of threatened and endangered salmonids. PNNL’s role in this multi-year study is to monitor the habitat structure (e.g., vegetation, topography, channel morphology, and sediment type) as well as hydrologic patterns.« less

Recovery of Data from the Narragansett Bay Project, 1985-1992: User's Manual and CD-ROM

EPA Science Inventory

Data from the 1985-1992 era of the Narragansett Bay Project, an estuary of the National Estuary Program, were recovered from numerous storage media, updated to modern software, and burned to CD-ROM. The data will be used by, among others, EPA researchers working on long-term tren...

Padilla Bay: The Estuary Guide. Level 2.

ERIC Educational Resources Information Center

Friesem, Judy; Lynn, Valerie, Ed.

Estuaries are marine systems that serve as nurseries for animals, links in the migratory pathways, and habitat for a complex community of organisms. This curriculum guide intended for use at the middle school level is designed for use with the on-site program developed by the Padilla Bay National Esturine Research Reserve (Washington). The guide…

Padilla Bay: The Estuary Guide. Level 1. Publication No. 93-108.

ERIC Educational Resources Information Center

Friesem, Judy

Padilla Bay National Estuarine Research Reserve in Washington is managed by the Washington State Department of Ecology, Shorelands and Coastal Zone management Program. This guide is designed for primary teachers to complement a visit to the reserve and is a useful resource to teach about estuaries, shorelands, and coastal resources. Activities are…

Geophysical mapping of oyster habitats in a shallow estuary; Apalachicola Bay, Florida

USGS Publications Warehouse

Twichell, David C.; Andrews, Brian D.; Edmiston, H. Lee; Stevenson, William R.

2007-01-01

This report presents high-resolution geophysical data, interpretive maps, and a preliminary discussion about the oyster habitat and estuary-floor geology within Apalachicola Bay, Florida (fig. 1). During two research cruises, conducted in 2005 and 2006, approximately 230 km² of the bay floor were surveyed using interferometric-bathymetry, sidescan-sonar, and chirp seismic-reflection techniques. The research was conducted as part of a cooperative program between the U.S. Geological Survey (USGS), the National Oceanic and Atmospheric Administration Coastal Services Center (CSC), and the Apalachicola Bay National Estuarine Research Reserve. The Apalachicola Bay National Estuarine Research Reserve was established in 1979 to provide opportunities for long-term monitoring and research to provide a basis for more informed coastal management decisions for this estuary. Apalachicola Bay is the largest oyster fishery in Florida (Whitfield and Beaumariage, 1977), and the primary objective of this program is to develop a suite of maps that define oyster habitat distribution and estuary-floor geology within the bay. The resulting maps will assist in effective management of oyster resources and provide a reference geologic framework for future scientific and applied research.

Discontinuous Galerkin modeling of the Columbia River's coupled estuary-plume dynamics

NASA Astrophysics Data System (ADS)

Vallaeys, Valentin; Kärnä, Tuomas; Delandmeter, Philippe; Lambrechts, Jonathan; Baptista, António M.; Deleersnijder, Eric; Hanert, Emmanuel

2018-04-01

The Columbia River (CR) estuary is characterized by high river discharge and strong tides that generate high velocity flows and sharp density gradients. Its dynamics strongly affects the coastal ocean circulation. Tidal straining in turn modulates the stratification in the estuary. Simulating the hydrodynamics of the CR estuary and plume therefore requires a multi-scale model as both shelf and estuarine circulations are coupled. Such a model has to keep numerical dissipation as low as possible in order to correctly represent the plume propagation and the salinity intrusion in the estuary. Here, we show that the 3D baroclinic discontinuous Galerkin finite element model SLIM 3D is able to reproduce the main features of the CR estuary-to-ocean continuum. We introduce new vertical discretization and mode splitting that allow us to model a region characterized by complex bathymetry and sharp density and velocity gradients. Our model takes into account the major forcings, i.e. tides, surface wind stress and river discharge, on a single multi-scale grid. The simulation period covers the end of spring-early summer of 2006, a period of high river flow and strong changes in the wind regime. SLIM 3D is validated with in-situ data on the shelf and at multiple locations in the estuary and compared with an operational implementation of SELFE. The model skill in the estuary and on the shelf indicate that SLIM 3D is able to reproduce the key processes driving the river plume dynamics, such as the occurrence of bidirectional plumes or reversals of the inner shelf coastal currents.

DOE Office of Scientific and Technical Information (OSTI.GOV)

Johnson, Gary E.

This annual report is a deliverable for fiscal year 2006 (FY06) for Project 2002-077-00, Facilitation of the Estuary/Ocean Subgroup (EOS). The EOS is part of the research, monitoring, and evaluation (RME) effort the Action Agencies (Bonneville Power Administration, U.S. Army Corps of Engineers, U.S. Bureau of Reclamation) developed in response to the 2000 and 2004 Biological Opinions on operation of the Federal Columbia River Power System. The goal of the EOS project is to facilitate activities of the estuary/ocean RME subgroup as it coordinates implementation of the Estuary RME Plan. In FY06, EOS project accomplishments included: 1) subgroup meetings; 2)more » participation in the estuary work group of the Pacific Northwest Aquatic Monitoring Partnership; 3) project management via the project tracking system, PISCES; 4) quarterly project status reports; and 5) a major revision to the Estuary RME Plan (new version May 2006) based on comments by EOS members, the Independent Scientific Review Panel, and other reviewers. In the context of uncertainty about the direction of the federal RME due to litigation on the FCRPS Biological Opinion, FY06 activities for the EOS project resulted in expanded substantive coordination with other regional RME forums, project tracking infrastructure, and a new version of the Estuary RME Plan.« less

Integrating science and resource management in Tampa Bay, Florida

USGS Publications Warehouse

Yates, Kimberly K.; Greening, Holly; Morrison, Gerold

2011-01-01

Tampa Bay is recognized internationally for its remarkable progress towards recovery since it was pronounced "dead" in the late 1970s. Due to significant efforts by local governments, industries and private citizens throughout the watershed, water clarity in Tampa Bay is now equal to what it was in 1950, when population in the watershed was less than one-quarter of what it is today. Seagrass extent has increased by more than 8,000 acres since the mid-1980s, and fish and wildlife populations are increasing. Central to this successful turn-around has been the Tampa Bay resource management community's long-term commitment to development and implementation of strong science-based management strategies. Research institutions and agencies, including Eckerd College, the Florida Wildlife Commission Fish and Wildlife Research Institute, Mote Marine Laboratory, National Oceanic and Atmospheric Administration, the Southwest Florida Water Management District, University of South Florida, U.S. Environmental Protection Agency, U.S. Geological Survey, local and State governments, and private companies contribute significantly to the scientific basis of our understanding of Tampa Bay's structure and ecological function. Resource management agencies, including the Tampa Bay Regional Planning Council's Agency on Bay Management, the Southwest Florida Water Management District's Surface Water Improvement and Management Program, and the Tampa Bay Estuary Program, depend upon this scientific basis to develop and implement regional adaptive management programs. The importance of integrating science with management has become fully recognized by scientists and managers throughout the region, State and Nation. Scientific studies conducted in Tampa Bay over the past 10–15 years are increasingly diverse and complex, and resource management programs reflect our increased knowledge of geology, hydrology and hydrodynamics, ecology and restoration techniques. However, a synthesis of this research and its integration into resource management has not been prepared for Tampa Bay since the mid-1980s. The need for an up-to-date synthesis of Tampa Bay science and management has resulted in the production of this document. The U.S. Geological Survey recently completed a 5-year Tampa Bay Integrated Science Study, and the Tampa Bay Estuary Program updated the Comprehensive Conservation and Management Plan for Tampa Bay in 2006. These efforts build upon results of the many research and management studies and programs summarized here.

Man's Impact on the Environment: The Estuary as an Ecosystem.

ERIC Educational Resources Information Center

Brevard County School Board, Cocoa, FL.

This environmental education guide focuses on man's impact on the estuary. The program contained in the guide is developed around the following nine questions: (1) What is a definition of the ecosystem being investigated?; (2) What are some of the biotic and abiotic features of the ecosystem and how do these features interrelate?; (3) Where are…

Man's Impact on the Environment: The Estuary as an Ecosystem. Update.

ERIC Educational Resources Information Center

Brevard County School Board, Cocoa, FL.

This environmental education program emphasizes the cause and effect of change in an estuary ecosystem with special attention given to man and his role in environmental change. Concepts are employed from the natural and social sciences to investigate environmental problems. The units are designed around these questions: (1) What is an ecosystem?;…

Seasonal and interannual patterns in primary production ...

EPA Pesticide Factsheets

Measurements of primary production and respiration provide fundamental information about the trophic status of aquatic ecosystems, yet such measurements are logistically difficult and expensive to sustain as part of long-term monitoring programs. However, ecosystem metabolism parameters can be inferred from high frequency water quality data collections using autonomous logging instruments. For this study, we analyzed such time series datasets from three Gulf of Mexico estuaries: Grand Bay, MS, Weeks Bay AL and Apalachicola Bay FL. Data were acquired from NOAA's National Estuarine Research Reserve System Wide Monitoring Program and used to calculate gross primary production (GPP), ecosystem respiration (ER) and net ecosystem metabolism (NEM) using Odum's open water method. The three systems present a diversity of estuaries typical of the Gulf of Mexico region, varying by as much as 2 orders of magnitude in key physical characteristics, such as estuarine area, watershed area, freshwater flow, and nutrient loading. In all three systems, gross primary production (GPP) and ecosystem respiration (ER) displayed strong seasonality, peaking in summer and being lowest during winter. Peak rates of GPP and ER exceeded 200 mmol O2 m-2 d-1 52 in all three estuaries. To our knowledge, this is the only study examining long term trends in rates of GPP, ER and NEM in estuaries. Variability in metabolism tended to be small among sites within each estuary. Nitrogen loading was high

Vulnerability Assessments in Support of the Climate Ready ...

EPA Pesticide Factsheets

As part of the Climate Ready Estuaries (CRE) program, the Global Change Research Program (GCRP) in the National Center for Environmental Assessment, Office of Research and Development at the U.S. Environmental Protection Agency has prepared a report exploring a new methodology for climate change vulnerability assessments using Massachusetts Bays’ salt marsh ecosystem as a demonstration. The aim is to synthesize place-based information on the potential implications of climate change for key ecosystem processes in each estuary, in a form that will enable managers to undertake management adaptation planning.

Are coastal managers ready for climate change? A case study from estuaries along the Pacific coast of the United States

USGS Publications Warehouse

Thorne, Karen M.; Elliott-Fisk, Deborah L.; Freeman, Chase; Bui, Thuy-Vy D.; Powelson, Katherine; Janousek, Christopher; Buffington, Kevin J.; Takekawa, John Y.

2017-01-01

A key challenge for coastal resource managers is to plan and implement climate change adaptation strategies inlight of uncertainties and competing management priorities. In 2014, we held six workshops across estuaries along the Pacific coast of North America with over 150 participants to evaluate resource managers' perceived level of understanding of climate change science, where they obtain information, how they use this knowledge, and their preparedness for incorporating climate change into their management decisions. We found that most resource managers understood the types of climate change impacts likely to occur in their estuaries, but often lacked the scientific information to make decisions and plan effectively. Managers stated that time, money, and staff resources were the largest obstacles in their efforts. Managers identified that they learned most of their information from peers, scientific journals, and the Internet and indicated that sea-level rise was their greatest concern. There was, however, variation in managers' levels of readiness and perceived knowledge within and among workshop locations. The workshops revealed that some regions don't have the information they need or the planning capacity to effectively integrate climate change into their management, with eight out of fifteen site comparisons showing a significant difference between their level of preparedness (F5,26 = 6.852; p = 0.0003), and their willingness to formally plan (F5,26 = 12.84; p = 0.000002). We found that Urban estuaries were significantly different from Mixed Use and Rural estuaries, in having access to information and feeling more prepared to conduct climate change planning and implementation (F2,29 = 17.34; p = 0.00001). To facilitate climate change preparedness more comprehensive integration of science into management decisions is essential.

Young of the year bluefish (Pomatomus saltatrix) as a bioindicator of estuarine health: Establishing a new baseline for persistent organic pollutants after Hurricane Sandy for selected estuaries in New Jersey and New York

USGS Publications Warehouse

Smalling, Kelly L.; Deshpande, Ashok D.; Blazer, Vicki S.; Bruce W Dockum,; DeMond Timmons,; Beth L. Sharack,; Baker, Ronald J.; Jennifer Samson,; Reilly, Timothy J.

2016-01-01

Atlantic coastal bays of the US are essential habitat for young of year bluefish (Pomatomus saltatrix). Their residence in these estuaries during critical life stages, high lipid content, and piscivory make bluefish an ideal bioindicator species for evaluating estuarine health. Individual whole fish from four estuaries impacted by Hurricane Sandy were collected in August 2013, analyzed for a suite of persistent organic pollutants (POPs) including polychlorinated biphenyls, polybrominated diphenyl ethers and organochlorine pesticides and evaluated using health metrics. Concentrations in whole bluefish differed by estuary; however, concentrations for many POPs decreased or were similar to those observed prior to the hurricane. Prevalence of the ectoparasitic gill isopod (Lironeca ovalis) varied by estuary and no relationships between contaminants and lesions were observed. Bluefish should be considered for monitoring programs and, if sampled frequently, could be an effective bioindicator of incremental and episodic changes in contaminants within aquatic food webs.

Occurrence and distribution of dissolved tellurium in Changjiang River estuary

NASA Astrophysics Data System (ADS)

Wu, Xiaodan; Song, Jinming; Li, Xuegang

2014-03-01

With the implementation of the GEOTRACES program, the biogeochemical cycle and distribution of tellurium (Te) in marine environments are becoming increasing environmental concerns. In this study, the concentration of dissolved Te in the Changjiang (Yangtze) River estuary and nearby waters was determined in May 2009 by hydride-generation atomic fluorescence spectrometry to elucidate the abundance, dominant species, distribution, and relationship with environmental factors. Results show that: (1) dissolved Te was low owing to its low abundance in the Earth's crust, high insolubility in water, and strong affinity to particulate matter; (2) Te(IV) and Te(VI) predominated in surface water. Te(VI) was the dominant species in bottom water, and Te(IV) was the minor species; (3) Horizontally, resulting from low phytoplankton metabolism and the weak reduction from Te(VI) to Te(IV) in the shore, Te(IV) was concentrated in the central zone instead of the coastal region. However, Te(VI) was abundant near the mouth of the Changjiang River where the Changjiang water is diluted and in the area to the south where the Taiwan Warm Current invaded. In the adsorption-desorption process, Te(IV) was negatively related to suspended particulate matter (SPM), indicating that it was adsorbed by particulate matter. While for Te(VI), the positive correlation with SPM suggested that it was desorbed from the solid phase. In the estuary, dissolved Te had a negative correlation to salinity. However, it deviated from the dilution line in high-salinity regions due to the invasion of the Taiwan Warm Current and the mineralization of organic matter. The relationship between Te(IV) and SPM nutrients indicated that it was more bioavailable and more related to phosphorus than to nitrogen. Progress in the field is slow and more research is needed to quantify the input of Te to the estuary and evaluate the biochemical role of organisms.

The role of tidal marsh restoration in fish management in the San Francisco Estuary

USGS Publications Warehouse

Herbold, Bruce; Baltz, Donald; Brown, Larry R.; Grossinger, Robin; Kimmerer, Wim J.; Lehman, Peggy W.; Moyle, Peter B.; Nobriga, Matthew L.; Simenstad, Charles A.

2015-01-01

Tidal marsh restoration is an important management issue in the San Francisco Estuary (estuary). Restoration of large areas of tidal marsh is ongoing or planned in the lower estuary (up to 6,000 ha, Callaway et al. 2011). Large areas are proposed for restoration in the upper estuary under the Endangered Species Act biological opinions (3,237 ha) and the Bay Delta Conservation Plan (26,305 ha). In the lower estuary, tidal marsh has proven its value to a wide array of species that live within it (Palaima 2012). In the Sacramento–San Joaquin Delta (Delta), one important function ascribed to restoration of freshwater tidal marshes is that they make large contributions to the food web of fish in open waters (BDCP 2013). The Ecosystem Restoration Program ascribed a suite of ecological functions to tidal marsh restoration, including habitat and food web benefits to native fish (CDFW 2010). This background was the basis for a symposium, Tidal Marshes and Native Fishes in the Delta: Will Restoration Make a Difference? held at the University of California, Davis, on June 10, 2013. This paper summarizes conclusions the authors drew from the symposium.

Unraveling the environmental and anthropogenic drivers of bacterial community changes in the Estuary of Bilbao and its tributaries.

PubMed

Aguirre, Mikel; Abad, David; Albaina, Aitor; Cralle, Lauren; Goñi-Urriza, María Soledad; Estonba, Andone; Zarraonaindia, Iratxe

2017-01-01

In this study, 16S rRNA gene sequencing was used to characterize the changes in taxonomic composition and environmental factors significantly influencing bacterial community structure across an annual cycle in the Estuary of Bilbao as well as its tributaries. In spite of this estuary being small and characterized by a short residence time, the environmental factors most highly correlated with the bacterial community mirrored those reported to govern larger estuaries, specifically salinity and temperature. Additionally, bacterial community changes in the estuary appeared to vary with precipitation. For example, an increase in freshwater bacteria (Comamonadaceae and Sphingobacteriaceae) was observed in high precipitation periods compared to the predominately marine-like bacteria (Rhodobacterales and Oceanospirillales) that were found in low precipitation periods. Notably, we observed a significantly higher relative abundance of Comamonadaceae than previously described in other estuaries. Furthermore, anthropic factors could have an impact on this particular estuary's bacterial community structure. For example, ecosystem changes related to the channelization of the estuary likely induced a low dissolved oxygen (DO) concentration, high temperature, and high chlorophyll concentration period in the inner euhaline water in summer (samples with salinity >30 ppt). Those samples were characterized by a high abundance of facultative anaerobes. For instance, OTUs classified as Cryomorphaceae and Candidatus Aquiluna rubra were negatively associated with DO concentration, while Oleiphilaceae was positively associated with DO concentration. Additionally, microorganisms related to biological treatment of wastewater (e.g Bdellovibrio and Zoogloea) were detected in the samples immediately downstream of the Bilbao Wastewater Treatment Plant (WWTP). There are several human activities planned in the region surrounding the Estuary of Bilbao (e.g. sediment draining, architectural changes, etc.) which will likely affect this ecosystem. Therefore, the addition of bacterial community profiling and diversity analysis into the estuary's ongoing monitoring program would provide a more comprehensive view of the ecological status of the Estuary of Bilbao.

Earth resources programs at the Langley Research Center. Part 2: Coastal zone oceanography program

NASA Technical Reports Server (NTRS)

Bressette, W. E.

1972-01-01

The approaches used to develop the coastal zone oceanic research program are outlined, and activities in the areas of satellite application, estuaries, continental shelf and environmental modeling are briefly described.

Columbia Estuary Ecosystem Restoration Program. 2012 Synthesis Memorandum

DTIC Science & Technology

2013-01-01

species . Predation studies have not been conducted in wetland sites, and bird predation in particular may be significant. Do factors in the estuary...ensuing sections, we concentrate on synthesizing information pertaining to salmon- habitat associations. We first review the species , life history types...Bay, and Grays River). Six species of salmon and anadromous trout were identified in these shallow-water habitats : Chinook salmon (Onchryrhchus

Model behavior and sensitivity in an application of the cohesive bed component of the community sediment transport modeling system for the York River estuary, VA, USA

USGS Publications Warehouse

Fall, Kelsey A.; Harris, Courtney K.; Friedrichs, Carl T.; Rinehimer, J. Paul; Sherwood, Christopher R.

2014-01-01

The Community Sediment Transport Modeling System (CSTMS) cohesive bed sub-model that accounts for erosion, deposition, consolidation, and swelling was implemented in a three-dimensional domain to represent the York River estuary, Virginia. The objectives of this paper are to (1) describe the application of the three-dimensional hydrodynamic York Cohesive Bed Model, (2) compare calculations to observations, and (3) investigate sensitivities of the cohesive bed sub-model to user-defined parameters. Model results for summer 2007 showed good agreement with tidal-phase averaged estimates of sediment concentration, bed stress, and current velocity derived from Acoustic Doppler Velocimeter (ADV) field measurements. An important step in implementing the cohesive bed model was specification of both the initial and equilibrium critical shear stress profiles, in addition to choosing other parameters like the consolidation and swelling timescales. This model promises to be a useful tool for investigating the fundamental controls on bed erodibility and settling velocity in the York River, a classical muddy estuary, provided that appropriate data exists to inform the choice of model parameters.

40 CFR 35.9030 - Work program.

Code of Federal Regulations, 2014 CFR

2014-07-01

... 40 Protection of Environment 1 2014-07-01 2014-07-01 false Work program. 35.9030 Section 35.9030 Protection of Environment ENVIRONMENTAL PROTECTION AGENCY GRANTS AND OTHER FEDERAL ASSISTANCE STATE AND LOCAL ASSISTANCE Financial Assistance for the National Estuary Program § 35.9030 Work program. The work program is...

40 CFR 35.9030 - Work program.

Code of Federal Regulations, 2013 CFR

2013-07-01

... 40 Protection of Environment 1 2013-07-01 2013-07-01 false Work program. 35.9030 Section 35.9030 Protection of Environment ENVIRONMENTAL PROTECTION AGENCY GRANTS AND OTHER FEDERAL ASSISTANCE STATE AND LOCAL ASSISTANCE Financial Assistance for the National Estuary Program § 35.9030 Work program. The work program is...

40 CFR 35.9030 - Work program.

Code of Federal Regulations, 2010 CFR

2010-07-01

... 40 Protection of Environment 1 2010-07-01 2010-07-01 false Work program. 35.9030 Section 35.9030 Protection of Environment ENVIRONMENTAL PROTECTION AGENCY GRANTS AND OTHER FEDERAL ASSISTANCE STATE AND LOCAL ASSISTANCE Financial Assistance for the National Estuary Program § 35.9030 Work program. The work program is...

40 CFR 35.9030 - Work program.

Code of Federal Regulations, 2011 CFR

2011-07-01

... 40 Protection of Environment 1 2011-07-01 2011-07-01 false Work program. 35.9030 Section 35.9030 Protection of Environment ENVIRONMENTAL PROTECTION AGENCY GRANTS AND OTHER FEDERAL ASSISTANCE STATE AND LOCAL ASSISTANCE Financial Assistance for the National Estuary Program § 35.9030 Work program. The work program is...

40 CFR 35.9030 - Work program.

Code of Federal Regulations, 2012 CFR

2012-07-01

... 40 Protection of Environment 1 2012-07-01 2012-07-01 false Work program. 35.9030 Section 35.9030 Protection of Environment ENVIRONMENTAL PROTECTION AGENCY GRANTS AND OTHER FEDERAL ASSISTANCE STATE AND LOCAL ASSISTANCE Financial Assistance for the National Estuary Program § 35.9030 Work program. The work program is...

Young of the year bluefish (Pomatomus saltatrix) as a bioindicator of estuarine health: Establishing a new baseline for persistent organic pollutants after Hurricane Sandy for selected estuaries in New Jersey and New York.

PubMed

Smalling, Kelly L; Deshpande, Ashok D; Blazer, Vicki S; Dockum, Bruce W; Timmons, DeMond; Sharack, Beth L; Baker, Ronald J; Samson, Jennifer; Reilly, Timothy J

2016-06-30

Atlantic coastal bays of the US are essential habitat for young of year bluefish (Pomatomus saltatrix). Their residence in these estuaries during critical life stages, high lipid content, and piscivory make bluefish an ideal bioindicator species for evaluating estuarine health. Individual whole fish from four estuaries impacted by Hurricane Sandy were collected in August 2013, analyzed for a suite of persistent organic pollutants (POPs) including polychlorinated biphenyls, polybrominated diphenyl ethers and organochlorine pesticides and evaluated using health metrics. Concentrations in whole bluefish differed by estuary; however, concentrations for many POPs decreased or were similar to those observed prior to the hurricane. Prevalence of the ectoparasitic gill isopod (Lironeca ovalis) varied by estuary and no relationships between contaminants and lesions were observed. Bluefish should be considered for monitoring programs and, if sampled frequently, could be an effective bioindicator of incremental and episodic changes in contaminants within aquatic food webs. Published by Elsevier Ltd.

Evaluation of long-term trends in hydrographic and nutrient parameters in a southeast US coastal river.

PubMed

Williams, Asher A; Kimball, Matthew E

2013-12-01

The Nassau River estuary is located in northeast Florida adjacent to the eutrophic St. Johns River. Historically, development has been sparse in the Nassau River's catchment; thus, the system may provide a relatively undisturbed aquatic environment. To monitor the condition of the Nassau River estuary and to discern spatial and temporal trends in water quality, nutrients and hydrographic variables were assessed throughout the estuary from 1997 to 2011. Hydrographic (temperature, salinity, total suspended solids, and turbidity) and nutrient parameters (total phosphorus, ortho-PO₄(3-), total nitrogen, NH₄(+), total Kjeldahl nitrogen, and NO₃(-)) were monitored bimonthly at 12 sites in the mesohaline and polyhaline zones of the river. Nonparametric Kendall's Tau was implemented to analyze long-term water quality patterns. Salinity was found to increase with time, particularly in the mesohaline sampling sites. Dissolved oxygen decreased over time in the estuary and hypoxic conditions became increasingly frequent in the final years of the study. Nutrients increased in the estuary, ranging from 149 to 401%. Rainfall data collected in adjacent conservation areas did not correlate well with nutrients as compared with stream discharge data collected in the basin headwaters, outside of the conservation lands, attributed here to expanding urbanization. During the study period, the Nassau basin underwent rapid human population growth and land development resulting in commensurate impacts to water quality. Nutrient and physical data collected during this study indicate that the Nassau River estuary is becoming more eutrophic with time.

Adapting an ambient monitoring program to the challenge of managing emerging pollutants in the San Francisco Estuary.

PubMed

Hoenicke, Rainer; Oros, Daniel R; Oram, John J; Taberski, Karen M

2007-09-01

While over seven million organic and inorganic compounds that have been indexed by the American Chemical Society's Chemical Abstracts Service in their CAS Registry are commercially available, most pollution monitoring programs focus only on those chemical stressors for which regulatory benchmarks exist, and have been traditionally considered responsible for the most significant human and environmental health risks. Until the late 1990s, the San Francisco Estuary Regional Monitoring Program was no exception in that regard. After a thorough external review, the monitoring program responded to the need for developing a pro-active surveillance approach for emerging pollutants in recognition of the fact that the potential for the growing list of widely used chemical compounds to alter the integrity of water is high. We describe (1) the scientific and analytical bases underlying a new surveillance monitoring approach; (2) summarize approaches used and results obtained from a forensic retrospective; (3) present the growing data set on emerging pollutants from surveillance monitoring and related efforts in the San Francisco Bay Area to characterize newly targeted compounds in wastewater streams, sediment, storm water runoff, and biota; and (4) suggest next steps in monitoring program development and applied research that could move beyond traditional approaches of pollutant characterization. Based on the forensic analysis of archived chromatograms and chemical and toxicological properties of candidate compounds, we quantified a variety of synthetic organic compounds which had previously not been targeted for analysis. Flame retardant compounds, pesticides and insecticide synergists, insect repellents, pharmaceuticals, personal care product ingredients, plasticizers, non-ionic surfactants, and other manufacturing ingredients were detected in water, sediment, and/or biological tissue samples. Several of these compounds, especially polybrominated diphenyl ether flame retardants, exhibited concentrations of environmental concern. We also describe environmental management challenges associated with emerging pollutants and how pro-active surveillance monitoring might assist in implementing a more holistic approach to pollution prevention and control before emerging pollutants become a burden on future generations.

Comparison of environmental forcings affecting suspended sediments variability in two macrotidal, highly-turbid estuaries

NASA Astrophysics Data System (ADS)

Jalón-Rojas, Isabel; Schmidt, Sabine; Sottolichio, Aldo

2017-11-01

The relative contribution of environmental forcing frequencies on turbidity variability is, for the first time, quantified at seasonal and multiannual time scales in tidal estuarine systems. With a decade of high-frequency, multi-site turbidity monitoring, the two nearby, macrotidal and highly-turbid Gironde and Loire estuaries (west France) are excellent natural laboratories for this purpose. Singular Spectrum Analyses, combined with Lomb-Scargle periodograms and Wavelet Transforms, were applied to the continuous multiannual turbidity time series. Frequencies of the main environmental factors affecting turbidity were identified: hydrological regime (high versus low river discharges), river flow variability, tidal range, tidal cycles, and turbulence. Their relative influences show similar patterns in both estuaries and depend on the estuarine region (lower or upper estuary) and the time scale (multiannual or seasonal). On the multiannual time scale, the relative contribution of tidal frequencies (tidal cycles and range) to turbidity variability decreases up-estuary from 68% to 47%, while the influence of river flow frequencies increases from 3% to 42%. On the seasonal time scale, the relative influence of forcings frequencies remains almost constant in the lower estuary, dominated by tidal frequencies (60% and 30% for tidal cycles and tidal range, respectively); in the upper reaches, it is variable depending on hydrological regime, even if tidal frequencies are responsible for up 50% of turbidity variance. These quantifications show the potential of combined spectral analyses to compare the behavior of suspended sediment in tidal estuaries throughout the world and to evaluate long-term changes in environmental forcings, especially in a context of global change. The relevance of this approach to compare nearby and overseas systems and to support management strategies is discussed (e.g., selection of effective operation frequencies/regions, prediction of the most affected regions by the implementation of operational management plans).

Studies of the San Francisco Bay, California, estuarine ecosystem regional monitoring program results, 1996

USGS Publications Warehouse

Baylosis, Jelriza I.; Edmunds, Jody L.; Cole, Brian E.; Cloern, James E.

1997-01-01

As part of a regional monitoring program, water samples were collected in the San Francisco Bay estuary during 21 cruises from January through December 1996. Conductivity, temperature, light attenuation, turbidity, oxygen, and in-vivo chlorophyll fluorescence were measured longitudinally and vertically in the main channel of the estuary from south of the Dumbarton Bridge in the southern part of the Bay to Rio Vista on the Sacramento River. Discrete water samples were analyzed for chlorophyll a, phaeopigments, suspended participate matter, and dissolved oxygen. Water density was calculated from salinity, temperature, and pressure (depth), and is included in the data summaries.

CHARACTERIZATION OF SMALL ESTUARIES AS A COMPONENT OF A REGIONAL-SCALE MONITORING PROGRAM

EPA Science Inventory

Large-scale environmental monitoring programs, such as EPA's Environmental Monitoring and Assessment Program (EMAP), by nature focus on estimating the ecological condition of large geographic areas. Generally missing is the ability to provide estimates of condition of individual ...

Impacts of pesticides in a Central California estuary.

PubMed

Anderson, Brian; Phillips, Bryn; Hunt, John; Siegler, Katie; Voorhees, Jennifer; Smalling, Kelly; Kuivila, Kathy; Hamilton, Mary; Ranasinghe, J Ananda; Tjeerdema, Ron

2014-03-01

Recent and past studies have documented the prevalence of pyrethroid and organophosphate pesticides in urban and agricultural watersheds in California. While toxic concentrations of these pesticides have been found in freshwater systems, there has been little research into their impacts in marine receiving waters. Our study investigated pesticide impacts in the Santa Maria River estuary, which provides critical habitat to numerous aquatic, terrestrial, and avian species on the central California coast. Runoff from irrigated agriculture constitutes a significant portion of Santa Maria River flow during most of the year, and a number of studies have documented pesticide occurrence and biological impacts in this watershed. Our study extended into the Santa Maria watershed coastal zone and measured pesticide concentrations throughout the estuary, including the water column and sediments. Biological effects were measured at the organism and community levels. Results of this study suggest the Santa Maria River estuary is impacted by current-use pesticides. The majority of water samples were highly toxic to invertebrates (Ceriodaphnia dubia and Hyalella azteca), and chemistry evidence suggests toxicity was associated with the organophosphate pesticide chlorpyrifos, pyrethroid pesticides, or mixtures of both classes of pesticides. A high percentage of sediment samples were also toxic in this estuary, and sediment toxicity occurred when mixtures of chlorpyrifos and pyrethroid pesticides exceeded established toxicity thresholds. Based on a Relative Benthic Index, Santa Maria estuary stations where benthic macroinvertebrate communities were assessed were degraded. Impacts in the Santa Maria River estuary were likely due to the proximity of this system to Orcutt Creek, the tributary which accounts for most of the flow to the lower Santa Maria River. Water and sediment samples from Orcutt Creek were highly toxic to invertebrates due to mixtures of the same pesticides measured in the estuary. This study suggests that the same pyrethroid and organophosphate pesticides that have been shown to cause water and sediment toxicity in urban and agriculture water bodies throughout California, have the potential to affect estuarine habitats. The results establish baseline data in the Santa Maria River estuary to allow evaluation of ecosystem improvement as management initiatives to reduce pesticide runoff are implemented in this watershed.

DOE Office of Scientific and Technical Information (OSTI.GOV)

McMichael, Geoffrey A.; Harnish, Ryan A.; Bellgraph, Brian J.

The study reported herein was funded as part of the Anadromous Fish Evaluation Program, which is managed by the U.S. Army Corps of Engineers (USACE). The Anadromous Fish Evaluation Program study code is EST P 02 01: A Study of Salmonid Survival and Behavior through the Columbia River Estuary Using Acoustic Tags. The study was conducted by the Pacific Northwest National Laboratory (PNNL) and National Oceanic and Atmospheric Administration (NOAA) Fisheries for the USACE Portland District. Estimated survival of acoustic-tagged juvenile Chinook salmon and steelhead through the lower Columbia River and estuary in 2009 was lowest in the final 50more » km of the estuary. Probability of survival was relatively high (>0.90) for yearling and subyearling Chinook salmon from the Bonneville Dam forebay (rkm 236) to Three-tree Point (rkm 49.6). Survival of juvenile Chinook salmon declined sharply through the lower 50 km of the estuary. Acoustic-tagged steelhead smolts did not survive as well as juvenile Chinook salmon between Bonneville Dam and the mouth of the Columbia River. Steelhead survival began to decline farther upstream (at rkm 86) relative to that of the Chinook salmon stocks. Subyearling Chinook salmon survival decreased markedly as the season progressed. It remains to be determined whether later migrating subyearling Chinook salmon are suffering increasing mortality as the season progresses or whether some portion of the apparent loss is due to fish extending their freshwater residence. This study provided the first glimpse into what promises to be a very informative way to learn more about how juvenile salmonid passage experiences through the FCRPS may influence their subsequent survival after passing Bonneville Dam. New information regarding the influence of migration pathway through the lower 50 km of the Columbia River estuary on probability of survival of juvenile salmonids, combined with increased understanding regarding the foraging distances and time periods of avian predators should prove useful in developing or assessing management actions to reduce losses of juvenile salmonid smolts that attempt to pass through the estuary on their seaward migration.« less

Impact of intertidal area characteristics on estuarine tidal hydrodynamics: A modelling study for the Scheldt Estuary

NASA Astrophysics Data System (ADS)

Stark, J.; Smolders, S.; Meire, P.; Temmerman, S.

2017-11-01

Marsh restoration projects are nowadays being implemented as ecosystem-based strategies to reduce flood risks and to restore intertidal habitat along estuaries. Changes in estuarine tidal hydrodynamics are expected along with such intertidal area changes. A validated hydrodynamic model of the Scheldt Estuary is used to gain fundamental insights in the role of intertidal area characteristics on tidal hydrodynamics and tidal asymmetry in particular through several geomorphological scenarios in which intertidal area elevation and location along the estuary is varied. Model results indicate that the location of intertidal areas and their storage volume relative to the local tidal prism determine the intensity and reach along the estuary over which tidal hydrodynamics are affected. Our model results also suggest that intertidal storage areas that are located within the main estuarine channel system, and hence are part of the flow-carrying part of the estuary, may affect tidal hydrodynamics differently than intertidal areas that are side-basins of the main estuarine channel, and hence only contribute little to the flow-carrying cross-section of the estuary. If tidal flats contribute to the channel cross-section and exert frictional effects on the tidal propagation, the elevation of intertidal flats influences the magnitude and direction of tidal asymmetry along estuarine channels. Ebb-dominance is most strongly enhanced if tidal flats are around mean sea level or slightly above. Conversely, flood-dominance is enhanced if the tidal flats are situated low in the tidal frame. For intertidal storage areas at specific locations besides the main channel, flood-dominance in the estuary channel peaks in the vicinity of those areas and generally reduces upstream and downstream compared to a reference scenario. Finally, the model results indicate an along-estuary varying impact on the tidal prism as a result of adding intertidal storage at a specific location. In addition to known effects of tidal prism decrease upstream and tidal prism increase downstream of additional storage areas, our model results indicate a reduction in tidal prism far downstream of intertidal storage areas as a result of a decreasing tidal range. This study may assist estuarine managers in assessing the impact of marsh restoration and managed shoreline realignment projects, as well as with the morphological management of estuaries through dredging and disposal of sediment on intertidal areas.

Absorption features of chromophoric dissolved organic matter (CDOM) and tracing implication for dissolved organic carbon (DOC) in Changjiang Estuary, China

NASA Astrophysics Data System (ADS)

Zhang, X. Y.; Chen, X.; Deng, H.; Du, Y.; Jin, H. Y.

2013-07-01

Chromophoric dissolved organic matter (CDOM) represents the light absorbing fraction of dissolved organic carbon (DOC). Studies have shown that the optical properties of CDOM can be used to infer the distribution and diffusion characteristics of DOC in the estuary and coastal zone. The inversion of DOC concentrations from remote sensing has been implemented in certain regions. In this study we investigate the potential of tracing DOC from CDOM by the measurement of DOC, absorption spectrum of CDOM, Chla concentration, suspended sediment (SS), and salinity from cruises in different seasons around the Changjiang estuary. Our results show that around the Changjiang estuary the absorption coefficients of CDOM in general have the similar spatial and temporal characteristics as that of DOC, but the strength of the correlation between CDOM and DOC varies locally and seasonally. The input of pollutants from outside the estuary, the bloom of phytoplankton in spring, re-suspension of deposited sediment, and light bleaching all contribute to the local and seasonal variation of the correlation between DOC and CDOM. An inversion model for the determination of DOC from CDOM is established, but the stability of model parameters and its application in different environments need further study. We find that relative to the absorption coefficient of CDOM, the fitted parameters of the absorption spectrum of DOM are better indictors for the composition of DOC. In addition, it is found that the terrestrial input of DOC to Changjiang estuary is a typical two-stage dilution process instead of a linear diffusion process.

DOE Office of Scientific and Technical Information (OSTI.GOV)

Diefenderfer, Heida L.; Thom, Ronald M.; Borde, Amy B.

This report is the second annual report of a six-year project to evaluate the cumulative effects of habitat restoration projects in the Columbia River Estuary, conducted by Pacific Northwest National Laboratory's Marine Sciences Laboratory, NOAA's National Marine Fisheries Service Pt. Adams Biological Field Station, and the Columbia River Estuary Study Taskforce for the US Army Corps of Engineers. In 2005, baseline data were collected on two restoration sites and two associated reference sites in the Columbia River estuary. The sites represent two habitat types of the estuary--brackish marsh and freshwater swamp--that have sustained substantial losses in area and that maymore » play important roles for salmonids. Baseline data collected included vegetation and elevation surveys, above and below-ground biomass, water depth and temperature, nutrient flux, fish species composition, and channel geometry. Following baseline data collection, three kinds of restoration actions for hydrological reconnection were implemented in several locations on the sites: tidegate replacements (2) at Vera Slough, near the city of Astoria in Oregon State, and culvert replacements (2) and dike breaches (3) at Kandoll Farm in the Grays River watershed in Washington State. Limited post-restoration data were collected: photo points, nutrient flux, water depth and temperature, and channel cross-sections. In subsequent work, this and additional post-restoration data will be used in conjunction with data from other sites to estimate net effects of hydrological reconnection restoration projects throughout the estuary. This project is establishing methods for evaluating the effectiveness of individual projects and a framework for assessing estuary-wide cumulative effects including a protocol manual for monitoring restoration and reference sites.« less

DOE Office of Scientific and Technical Information (OSTI.GOV)

Johnson, Gary E.; Sather, Nichole K.

This project covers facilitation of the Estuary/Ocean Subgroup (EOS) for federal research, monitoring, and evaluation (RME) and the Expert Regional Technical Group (ERTG) for estuary habitat restoration. The EOS is part of the research, monitoring, and evaluation effort that the Action Agencies (Bonneville Power Administration [BPA], U.S. Army Corps of Engineers [Corps], U.S. Bureau of Reclamation) developed in response to obligations arising from the Endangered Species Act as applied to operation of the Federal Columbia River Power System (FCRPS). The EOS is tasked by National Marine Fisheries Service (NMFS) and the Action Agencies (AAs) to design and coordinate implementation ofmore » the federal RME plan for the lower Columbia River and estuary, including the river’s plume in the ocean. Initiated in 2002, the EOS is composed of members from BPA, the Corps, NMFS, and Pacific Northwest National Laboratory’s (PNNL’s) Marine Sciences Laboratory, and other agencies as necessary.« less

A three-dimensional, time-dependent model of Mobile Bay

NASA Technical Reports Server (NTRS)

Pitts, F. H.; Farmer, R. C.

1976-01-01

A three-dimensional, time-variant mathematical model for momentum and mass transport in estuaries was developed and its solution implemented on a digital computer. The mathematical model is based on state and conservation equations applied to turbulent flow of a two-component, incompressible fluid having a free surface. Thus, bouyancy effects caused by density differences between the fresh and salt water, inertia from thare river and tidal currents, and differences in hydrostatic head are taken into account. The conservation equations, which are partial differential equations, are solved numerically by an explicit, one-step finite difference scheme and the solutions displayed numerically and graphically. To test the validity of the model, a specific estuary for which scaled model and experimental field data are available, Mobile Bay, was simulated. Comparisons of velocity, salinity and water level data show that the model is valid and a viable means of simulating the hydrodynamics and mass transport in non-idealized estuaries.

Juvenile Salmon Usage of the Skeena River Estuary

PubMed Central

Carr-Harris, Charmaine; Gottesfeld, Allen S.; Moore, Jonathan W.

2015-01-01

Migratory salmon transit estuary habitats on their way out to the ocean but this phase of their life cycle is more poorly understood than other phases. The estuaries of large river systems in particular may support many populations and several species of salmon that originate from throughout the upstream river. The Skeena River of British Columbia, Canada, is a large river system with high salmon population- and species-level diversity. The estuary of the Skeena River is under pressure from industrial development, with two gas liquefaction terminals and a potash loading facility in various stages of environmental review processes, providing motivation for understanding the usage of the estuary by juvenile salmon. We conducted a juvenile salmonid sampling program throughout the Skeena River estuary in 2007 and 2013 to investigate the spatial and temporal distribution of different species and populations of salmon. We captured six species of juvenile anadromous salmonids throughout the estuary in both years, and found that areas proposed for development support some of the highest abundances of some species of salmon. Specifically, the highest abundances of sockeye (both years), Chinook in 2007, and coho salmon in 2013 were captured in areas proposed for development. For example, juvenile sockeye salmon were 2–8 times more abundant in the proposed development areas. Genetic stock assignment demonstrated that the Chinook salmon and most of the sockeye salmon that were captured originated from throughout the Skeena watershed, while some sockeye salmon came from the Nass, Stikine, Southeast Alaska, and coastal systems on the northern and central coasts of British Columbia. These fish support extensive commercial, recreational, and First Nations fisheries throughout the Skeena River and beyond. Our results demonstrate that estuary habitats integrate species and population diversity of salmon, and that if proposed development negatively affects the salmon populations that use the estuary, then numerous fisheries would also be negatively affected. PMID:25749488

Unraveling the environmental and anthropogenic drivers of bacterial community changes in the Estuary of Bilbao and its tributaries

PubMed Central

Abad, David; Albaina, Aitor; Cralle, Lauren; Goñi-Urriza, María Soledad; Estonba, Andone; Zarraonaindia, Iratxe

2017-01-01

In this study, 16S rRNA gene sequencing was used to characterize the changes in taxonomic composition and environmental factors significantly influencing bacterial community structure across an annual cycle in the Estuary of Bilbao as well as its tributaries. In spite of this estuary being small and characterized by a short residence time, the environmental factors most highly correlated with the bacterial community mirrored those reported to govern larger estuaries, specifically salinity and temperature. Additionally, bacterial community changes in the estuary appeared to vary with precipitation. For example, an increase in freshwater bacteria (Comamonadaceae and Sphingobacteriaceae) was observed in high precipitation periods compared to the predominately marine-like bacteria (Rhodobacterales and Oceanospirillales) that were found in low precipitation periods. Notably, we observed a significantly higher relative abundance of Comamonadaceae than previously described in other estuaries. Furthermore, anthropic factors could have an impact on this particular estuary’s bacterial community structure. For example, ecosystem changes related to the channelization of the estuary likely induced a low dissolved oxygen (DO) concentration, high temperature, and high chlorophyll concentration period in the inner euhaline water in summer (samples with salinity >30 ppt). Those samples were characterized by a high abundance of facultative anaerobes. For instance, OTUs classified as Cryomorphaceae and Candidatus Aquiluna rubra were negatively associated with DO concentration, while Oleiphilaceae was positively associated with DO concentration. Additionally, microorganisms related to biological treatment of wastewater (e.g Bdellovibrio and Zoogloea) were detected in the samples immediately downstream of the Bilbao Wastewater Treatment Plant (WWTP). There are several human activities planned in the region surrounding the Estuary of Bilbao (e.g. sediment draining, architectural changes, etc.) which will likely affect this ecosystem. Therefore, the addition of bacterial community profiling and diversity analysis into the estuary’s ongoing monitoring program would provide a more comprehensive view of the ecological status of the Estuary of Bilbao. PMID:28594872

Juvenile salmon usage of the Skeena River estuary.

PubMed

Carr-Harris, Charmaine; Gottesfeld, Allen S; Moore, Jonathan W

2015-01-01

Migratory salmon transit estuary habitats on their way out to the ocean but this phase of their life cycle is more poorly understood than other phases. The estuaries of large river systems in particular may support many populations and several species of salmon that originate from throughout the upstream river. The Skeena River of British Columbia, Canada, is a large river system with high salmon population- and species-level diversity. The estuary of the Skeena River is under pressure from industrial development, with two gas liquefaction terminals and a potash loading facility in various stages of environmental review processes, providing motivation for understanding the usage of the estuary by juvenile salmon. We conducted a juvenile salmonid sampling program throughout the Skeena River estuary in 2007 and 2013 to investigate the spatial and temporal distribution of different species and populations of salmon. We captured six species of juvenile anadromous salmonids throughout the estuary in both years, and found that areas proposed for development support some of the highest abundances of some species of salmon. Specifically, the highest abundances of sockeye (both years), Chinook in 2007, and coho salmon in 2013 were captured in areas proposed for development. For example, juvenile sockeye salmon were 2-8 times more abundant in the proposed development areas. Genetic stock assignment demonstrated that the Chinook salmon and most of the sockeye salmon that were captured originated from throughout the Skeena watershed, while some sockeye salmon came from the Nass, Stikine, Southeast Alaska, and coastal systems on the northern and central coasts of British Columbia. These fish support extensive commercial, recreational, and First Nations fisheries throughout the Skeena River and beyond. Our results demonstrate that estuary habitats integrate species and population diversity of salmon, and that if proposed development negatively affects the salmon populations that use the estuary, then numerous fisheries would also be negatively affected.

Carbon storage and greenhouse gas fluxes in the San Juan ...

EPA Pesticide Factsheets

Mangrove systems are known carbon (C) and greenhouse gas (GHG) sinks, but this function may be affected by global change drivers that include (but are not limited to) eutrophication, climate change, species composition shifts, and hydrological changes. In Puerto Rico’s San Juan Bay Estuary, mangrove wetlands are characterized by anthropogenic impacts, particularly tidal restriction due to infilling of the Martin Pena Canal and eutrophication. The objective of our research is to measure carbon sequestration and carbon dioxide (CO2), methane (CH4), and nitrous oxide (N2O) fluxes in the San Juan Bay Estuary to understand the sustainability and role in global climate of this urban mangrove ecosystem. Cores for C sequestration measurements were collected and GHG fluxes were measured during rainy and dry seasons at 5 sites along a gradient of development and nitrogen loading in the San Juan Bay Estuary. At each site, paired GHG flux measurements were performed for mangrove wetland soil and estuarine water using static and floating chambers. Our results suggest a positive relationship between urban development and CH4 and N2O emissions, and demonstrate that in this system, estuarine waters are a major methane source. In addition to providing characterization of GHG fluxes in an urban subtropical estuary, these data provide a baseline against which future states of the estuary (after planned hydrological restoration has been implemented) may be compared. In Puer

Carbon storage and greenhouse gas fluxes in the San Juan ...

EPA Pesticide Factsheets

Mangrove systems are known carbon (C) and greenhouse gas (GHG) sinks, but this function may be affected by global change drivers that include (but are not limited to) eutrophication, climate change, species composition shifts, and hydrological changes. In Puerto Rico’s San Juan Bay Estuary, mangrove wetlands are characterized by anthropogenic impacts, particularly tidal restriction due to infilling of the Martin Pena Canal and eutrophication. The objective of our research is to measure carbon sequestration and carbon dioxide (CO2), methane (CH4), and nitrous oxide (N2O) fluxes in the San Juan Bay Estuary to understand the sustainability and role in global climate of this urban mangrove ecosystem. Cores for C sequestration measurements were collected and GHG fluxes were measured during rainy and dry seasons at 5 sites along a gradient of development and nitrogen loading in the San Juan Bay Estuary. At each site, paired GHG flux measurements were performed for mangrove wetland soil and estuarine water using static and floating chambers. Our results suggest a positive relationship between urban development and CH4 and N2O emissions, and demonstrate that in this system, estuarine waters are a major methane source. In addition to providing characterization of GHG fluxes in an urban subtropical estuary, these data provide a baseline against which future states of the estuary (after planned hydrological restoration has been implemented) may be compared. Thi

Development of an integrated ecosystem model to determine effectiveness of potential watershed management projects on improving Old Tampa Bay

Treesearch

Edward T. Sherwood; Holly Greening; Lizanne Garcia; Kris Kaufman; Tony Janicki; Ray Pribble; Brett Cunningham; Steve Peene; Jim Fitzpatrick; Kellie Dixon; Mike Wessel

2016-01-01

The Tampa Bay estuary has undergone a remarkable ecosystem recovery since the 1980s despite continued population growth within the region. However during this time, the Old Tampa Bay (OTB) segment has lagged behind the rest of the Bay’s recovery relative to improvements in overall water quality and seagrass coverage. In 2011, the Tampa Bay Estuary Program, in...

Identification of contaminant trends and data gaps for terrestrial vertebrates residing in northeastern estuaries of the United States

USGS Publications Warehouse

Rattner, B.A.; Pearson, J.L.; Golden, N.H.; Erwin, R.M.; Ottinger, M.A.

1998-01-01

The Biomonitoring of Environmental Status and Trends (BEST) program of the Department of the Interior is focused to identify and understand effects of contaminant stressors on biological resources under their stewardship. One BEST program activity involves evaluation of retrospective data to assess and predict the condition of biota in Atlantic coast estuaries. A 'Contaminant Exposure and Effects--Terrestrial Vertebrates' database (CEE-TV) has been compiled through computerized literature searches of Fish and Wildlife Reviews, BIOSIS, AGRICOLA, and TOXLINE, review of existing databases (e.g., US EPA Ecological Incident Information System, USGS Diagnostic and Epizootic Databases), and solicitation of unpublished reports from conservation agencies, private groups, and universities. Summary information has been entered into the CEE-TV database, including species, collection date (1965-present), site coordinates, sample matrix, contaminant concentrations, biomarker and bioindicator responses, and reference source, utilizing a 96-field dBase format. Currently, the CEE-TV database contains 3500 georeferenced records representing >200 vertebrate species and > 100,000 individuals residing in estuaries from Maine through Florida. This relational database can be directly queried, imported into the ARC/INFO geographic information system (GIS) to examine spatial tendencies, and used to identify 'hot-spots', generate hypotheses, and focus ecotoxicological assessments. An overview of temporal, phylogenetic, and geographic contaminant exposure and effects information, trends, and data gaps will be presented for terrestrial vertebrates residing in estuaries in the northeast United States.

Digital flow model of the Chowan River estuary, North Carolina

USGS Publications Warehouse

Daniel, C.C.

1977-01-01

A one-dimensional deterministic flow model based on the continuity equation had been developed to provide estimates of daily flow past a number of points on the Chowan River estuary of northeast North Carolina. The digital model, programmed in Fortran IV, computes daily average discharge for nine sites; four of these represent inflow at the mouths of major tributaries, the five other sites are at stage stations along the estuary. Because flows within the Chowan River and the lower reaches of its tributaries are tidally affected, flows occur in both upstream and downstream directions. The period of record generated by the model extends from April 1, 1974, to March 31, 1976. During the two years of model operation the average discharge at Edenhouse near the mouth of the estuary was 5,830 cfs (cubic feet per second). Daily average flows during this period ranged from 55,900 cfs in the downstream direction on July 17, 1975, to 14,200 cfs in the upstream direction on November 30, 1974

COASTAL WETLANDS INDICATOR STUDY: EMAP-ESTUARIES LOUISIANIAN PROVINCE - 1991

EPA Science Inventory

This document describes the rationale, objectives, approach, and strategy for testing biological indicators of ecological condition in coastal wetlands. This coastal wetlands program is part of the Environmental Monitoring and Assessment Program (EMAP) administered by the Environ...

Threshold values and management options for phosphorus in a catchment of an estuary in Denmark with poor ecological status

NASA Astrophysics Data System (ADS)

Kronvang, Brian; Windolf, Jørgen; Hinsby, Klaus; Markager, Stiig

2015-04-01

Assessment of the ecological status of an estuary in Denmark(Horsens estuary) indicate that beside reducing total N loads also total phosphorus (TP) loads should be reduced to a level corresponding to 56% of current TP loads to obtain a good ecological status as required by the EU Water Framework Directive (Hinsby et al., 2012). The estimated maximum acceptable TP load to the estuary amounting to 13 tonnes per year corresponds to a reduction of the current TP loadings (2000-2005) with an average of 10.4 tonnes P per year. The maximum allowed stream threshold TP concentration entering the estuary is then calculated to amount to 0.084 mg P L-1. A source apportionment of TP loads during the period 2000-2005 showed that point source emissions of TP contributed with 31% and diffuse sources including background loadings, agricultural losses and scattered dwellings contributed with the remaining 69% of the TP loadings to the estuary. The reduction targets for TP can be obtained by implementing different mitigation measures directed against diffuse losses in the catchment and introducing improved treatment of sewage water at point sources discharging either to freshwater or directly to the estuary. We developed a management option for the catchment and estuary that could be applied together with a reduction of the total nitrogen loadings in order to obtain a good ecological status in the Horsens estuary (Hinsby et al., 2012). The management scenario included a reduction of point source emissions of TP amounting to 4.14 tonnes P yr-1, restoration of 300 ha of riparian wetlands (3.0 tonnes P yr-1) and implementation of mandatory 10 m buffer strips with planting of trees along 300 km of watercourses (3.0 tonnes P yr-1). We find it impossible to calculate a threshold concentration for TP in groundwater within the catchment as the pathways of dissolved (leaching and groundwater discharges) and particulate (erosional) P forms are more complex than it is the case for nitrogen (Kronvang et al., 2007). The average concentration of total dissolved P (TDP) in aerobic groundwater in the catchment amounts to 0.018 mg P L-1, whereas it is much higher in anaerobic groundwater 0.130 mg P L-1. Knowledge on the distribution of groundwater between aerobic and anerobic groundwater within the catchment exists from the DK-model but TDP fluxes and especially emissions from groundwater to surface waters cannot be reliable estimated as part of TDP from anaerobic groundwater pathways is captured by sorption and precipitation processes in discharge areas before entering the watercourses as natural background concentrations of TDP in watercourses are much lower than could be estimated from the measured groundwater concentrations. References Hinsby, K., Markager, S., Kronvang, B., Windolf, J., Sonnenborg, T. and Thorling, L. 2012. Threshold values and management options for nutrients in a catchment of a temperate estuary with poor ecological status. Hydrology and Earth System Sciences 16(8): 2663-2683. Kronvang, B., Vagstad, N., Behrendt, H., Bogestrand, J, and Larsen, S. E. 2007 Phosphorus losses at the catchment scale within Europe: an overview, Soil Use Management., 23: 104-116.

Optimizing an estuarine water quality monitoring program through an entropy-based hierarchical spatiotemporal Bayesian framework

NASA Astrophysics Data System (ADS)

Alameddine, Ibrahim; Karmakar, Subhankar; Qian, Song S.; Paerl, Hans W.; Reckhow, Kenneth H.

2013-10-01

The total maximum daily load program aims to monitor more than 40,000 standard violations in around 20,000 impaired water bodies across the United States. Given resource limitations, future monitoring efforts have to be hedged against the uncertainties in the monitored system, while taking into account existing knowledge. In that respect, we have developed a hierarchical spatiotemporal Bayesian model that can be used to optimize an existing monitoring network by retaining stations that provide the maximum amount of information, while identifying locations that would benefit from the addition of new stations. The model assumes the water quality parameters are adequately described by a joint matrix normal distribution. The adopted approach allows for a reduction in redundancies, while emphasizing information richness rather than data richness. The developed approach incorporates the concept of entropy to account for the associated uncertainties. Three different entropy-based criteria are adopted: total system entropy, chlorophyll-a standard violation entropy, and dissolved oxygen standard violation entropy. A multiple attribute decision making framework is adopted to integrate the competing design criteria and to generate a single optimal design. The approach is implemented on the water quality monitoring system of the Neuse River Estuary in North Carolina, USA. The model results indicate that the high priority monitoring areas identified by the total system entropy and the dissolved oxygen violation entropy criteria are largely coincident. The monitoring design based on the chlorophyll-a standard violation entropy proved to be less informative, given the low probabilities of violating the water quality standard in the estuary.

DOE Office of Scientific and Technical Information (OSTI.GOV)

Perry, Russell W.; Skalski, John R.

Wetlands in the Columbia River estuary are actively being restored by reconnecting these habitats to the estuary, making more wetland habitats available to rearing and migrating juvenile salmon. Concurrently, thousands of acoustically tagged juvenile salmonids are released into the Columbia River to estimate their survival as they migrate through the estuary. Here, we develop a release-recapture model that makes use of these tagged fish to measure the success of wetland restoration projects in terms of their contribution to populations of juvenile salmon. Specifically, our model estimates the fraction of the population that enter the wetland, survival within the wetland, andmore » the mean residence time of fish within the wetland. Furthermore, survival in mainstem Columbia River downstream of the wetland can be compared between fish that remained the mainstem and entered the wetland. These conditional survival estimates provide a means of testing whether the wetland improves the subsequent survival of juvenile salmon by fostering growth or improving their condition. Implementing such a study requires little additional cost because it takes advantage of fish already released to estimate survival through the estuary. Thus, such a study extracts the maximum information at minimum cost from research projects that typically cost millions of dollars annually.« less

1993 Annual Report: San Francisco estuary regional monitoring program for trace substances

USGS Publications Warehouse

Thompson, B.; Lacy, Jessica; Hardin, Dane; Grovhaug, Tom; Taberski, K.; Jassby, Alan D.; Cloern, James E.; Caffrey, J.; Cole, B.; Schoellhamer, David H.

1993-01-01

Summaries of other monitoring activities pertinent to regional monitoring are also included in the Report: a description of the Regional Board’s Bay Protection Studies, the Sacramento Coordinated Monitoring Program, and a wetlands monitoring plan are included.

Seasonal, inter-annual and decadal changes of carbon dioxide (CO2), methane (CH4) and nitrous oxide (N2O) in the Scheldt estuary (Belgium, The Netherlands)

NASA Astrophysics Data System (ADS)

Borges, Alberto V.; Middelburg, Jack J. B.; Chou, Lei; Kromkamp, Jacco; Houtekamer, Marco; Harlay, Jérôme

2014-05-01

We carried out monthly cruises to study the seasonal and spatial variations of the partial pressure of carbon dioxide CO2 (pCO2), methane (CH4) and nitrous oxide (N2O) concentrations in the Scheldt estuary, a strongly human impacted system located in Belgium and the Netherlands. This survey was initiated in 2008 for pCO2, and from 2009 onwards for methane (CH4) and nitrous oxide (N2O). In the lower estuary, pCO2 strongly decreased and oxygen saturation level (%O2) strongly increased during the spring phytoplankton bloom. In the upper estuary, two yearly maxima of pCO2 coinciding with minima of %O2 occurred in spring and fall due to enhanced nitrification and/or net heterotrophy. In the upper estuary, pCO2 decreased in winter due to lower temperature (affecting solubility and inhibiting biological activity). pCO2 also decreased in summer due to increase in primary production and decrease of net heterotrophy. In the upper estuary, maxima of CH4 were observed in winter due to enhanced river inputs (high discharge) while in the lower estuary higher CH4 was observed in summer. This was probably due to inputs of CH4 from inter-tidal areas at the mouth of estuary that increased in summer due to higher temperatures and higher organic matter availability. N2O also showed higher values during winter in the upper estuary, but in summer N2O was low in the lower estuary due to decreased solubility due to higher temperature. During winter 2009, extremely high N2O values were observed in the upper estuary, up to 3257 nM (23738% saturation). This was related to the problems encountered by the Brussels North waste water treatment plant (WWTP) in late 2009. One of the collectors of the station was shut down in 25 November 2009, and by 8 December 2009, the whole WWTP was shut down and the waste-water was delivered directly to the Rupel. Extremely high N2O values were observed in the upper estuary on 7 December 2009, and abnormally high N2O values (compared to other years) persisted until April 6 2010. The comparison of present day N2O values with historical data obtained in 1993-1997 and 1978 shows a spectacular decrease of N2O levels from maximal values of about 350 nmol L-1 in the 1990's to 50 nmol L-1 in 2009-2012. This decrease reflects the collapse of NH4+ concentrations in the estuary due to the overall improvement of water quality in relation to the implementation of WWTPs, leading to a decrease of nitrification rates. The maximum of N2O concentration in 1978 was located between salinities 10-15, in the 1990's it was located between salinities 2 and 5, and nowadays it is located at salinities < 2.5. This suggests that the maximum of nitrification has migrated upstream in the estuary.

Short-term tidal asymmetry inversion in a macrotidal estuary (Beira, Mozambique)

NASA Astrophysics Data System (ADS)

Nzualo, Teodósio N. M.; Gallo, Marcos N.; Vinzon, Susana B.

2018-05-01

The distortion of the tide in estuaries, bays and coastal areas is the result of the generation of overtides due to the non-linear effects associated with friction, advection, and the finite effects of the tidal amplitude in shallow waters. The Beira estuary is classified as macrotidal, with a large ratio of S2/M2. Typical tides ranges from 6 m and 0.8 m, during springs and neaps tides, respectively. As a consequence of this large fortnightly tidal amplitude difference and the estuarine morphology, asymmetry inversions occur. Two types of tidal asymmetries were investigated in this paper, one considering tidal duration asymmetry (time difference between rising and falling tide) and the other, related to tidal velocity asymmetry (unequal magnitudes of flood and ebb peaks currents). In the Beira estuary when we examine the tidal duration asymmetry, flood dominance is observed during spring tide periods (negative time difference between rising and falling tide), while ebb dominance appears during neap tides (positive time difference between rising and falling tide). A 2DH hydrodynamic model was implemented to analyze this asymmetry inversion. The model was calibrated with water-level data measured at the Port of Beira and current data measured along the estuary. The model was run for different scenarios considering tidal constituents at the ocean boundary, river discharge and the morphology of the estuary. River discharge did not show significant effects on the tidal duration asymmetry. Through comparison of the scenarios, it was shown that the incoming ocean tide at the boundary has an ebb-dominant asymmetry, changing to flood-dominant only during spring tides due to the effect of shoaling and friction within the estuary. During neap tides, the propagation occurs mainly in the channels, and ebb dominance remains. The interplay between the estuary morphodynamics was thus identified and the relation between tidal duration asymmetry and tidal velocity asymmetry was observed. While fortnightly inversion in the tidal duration asymmetry is explained by the presence of channels and sandbanks, at the same time, the tidal velocity asymmetry acts as a positive feedback mechanism for bank formation and sediment retention.

Marine and Aquatic Research Experience: A Program for Undergraduates Studying Estuaries

NASA Astrophysics Data System (ADS)

Jett, H. L.; Robinson, C.; Meetze, K.; Wise, L.; Majzlik, E. J.; Williams, D. F.

2001-05-01

Since 1998, the Marine and Aquatic Research Experience (MARE) Program for Undergraduates has been conducting an on-going ecological and oceanographic survey of a coastal plain estuary, Winyah Bay, SC. MARE is a student-generated, faculty-guided model for hands-on research designed to apply classroom learning to real world applications. The overall goal of MARE is to create field-based learning opportunities for students while at the same time encouraging them to become scientists and to practice being scientists from conception to planning, to execution, to presentation of scientific research. To achieve this goal students work in "crews" within MARE which try to answer specific questions about the estuary. These crews share resources, ideas, and data with each other to produce a comprehensive database for the estuary. Involvement in MARE is strictly voluntary and not a requirement of a degree program. Also, MARE was established as part of the student natural interests and not as part of a professor's regular research. Another important feature of MARE is ownership. The research done and efforts made belong to the members of MARE. Although the role of faculty involvement in MARE is important through the use of their expertise, equipment, laboratories, and funding, the students are fundamentally responsible for organizing, conducting, and managing their own scientific investigations. However, along with this ownership of the scientific products of MARE comes responsibility for any mistakes made. In this sense the MARE members learn from real, not classroom mistakes. The ability to prepare for and deal with frustration and adversity in real-world situations is also an important component of MARE. The MARE research effort has been broken into crews with specific scientific directions. The biological oceanography crew has been primarily concerned with determining the species diversity of the Winyah Bay ecosystem. The physical oceanography and suspended sediment crews are trying to understanding the circulation and mixing of water masses and suspended matter throughout the estuary. The chemical oceanography crew has focused on the concentration and dynamics of nutrients. Recent additions to MARE include a geological processes crew and a remote sensing crew. An overview of the results to date and future research directions will be displayed and discussed.

THE NATIONAL COAST ASSESSMENT : EPA TECHNOLOGY TRANSFER TO STRATEGIC PARTNERS

EPA Science Inventory

The National Coastal Assessment (NCA) is a large-scale, comprehensive environmental monitoring program designed to characterize the ecological condition of the Nation's coastal resources (estuaries and near shore waters). A key to the success of the program is the development of ...

Modelling extreme climatic events in Guadalquivir Estuary ( Spain)

NASA Astrophysics Data System (ADS)

Delgado, Juan; Moreno-Navas, Juan; Pulido, Antoine; García-Lafuente, Juan; Calero Quesada, Maria C.; García, Rodrigo

2017-04-01

Extreme climatic events, such as heat waves and severe storms are predicted to increase in frequency and magnitude as a consequence of global warming but their socio-ecological effects are poorly understood, particularly in estuarine ecosystems. The Guadalquivir Estuary has been anthropologically modified several times, the original salt marshes have been transformed to grow rice and cotton and approximately one-fourth of the total surface of the estuary is now part of two protected areas, one of them is a UNESCO, MAB Biosphere Reserve. The climatic events are most likely to affect Europe in forthcoming decades and a further understanding how these climatic disturbances drive abrupt changes in the Guadalquivir estuary is needed. A barotropic model has been developed to study how severe storm events affects the estuary by conducting paired control and climate-events simulations. The changes in the local wind and atmospheric pressure conditions in the estuary have been studied in detail and several scenarios are obtained by running the model under control and real storm conditions. The model output has been validated with in situ water elevation and good agreement between modelled and real measurements have been obtained. Our preliminary results show that the model demonstrated the capability describe of the tide-surge levels in the estuary, opening the possibility to study the interaction between climatic events and the port operations and food production activities. The barotropic hydrodynamic model provide spatially explicit information on the key variables governing the tide dynamics of estuarine areas under severe climatic scenarios . The numerical model will be a powerful tool in future climate change mitigation and adaptation programs in a complex socio-ecological system.

Water quality measurements in San Francisco Bay by the U.S. Geological Survey, 1969–2015

USGS Publications Warehouse

Schraga, Tara; Cloern, James E.

2017-01-01

The U.S. Geological Survey (USGS) maintains a place-based research program in San Francisco Bay (USA) that began in 1969 and continues, providing one of the longest records of water-quality measurements in a North American estuary. Constituents include salinity, temperature, light extinction coefficient, and concentrations of chlorophyll-a, dissolved oxygen, suspended particulate matter, nitrate, nitrite, ammonium, silicate, and phosphate. We describe the sampling program, analytical methods, structure of the data record, and how to access all measurements made from 1969 through 2015. We provide a summary of how these data have been used by USGS and other researchers to deepen understanding of how estuaries are structured and function differently from the river and ocean ecosystems they bridge.

Water quality measurements in San Francisco Bay by the U.S. Geological Survey, 1969-2015.

PubMed

Schraga, Tara S; Cloern, James E

2017-08-08

The U.S. Geological Survey (USGS) maintains a place-based research program in San Francisco Bay (USA) that began in 1969 and continues, providing one of the longest records of water-quality measurements in a North American estuary. Constituents include salinity, temperature, light extinction coefficient, and concentrations of chlorophyll-a, dissolved oxygen, suspended particulate matter, nitrate, nitrite, ammonium, silicate, and phosphate. We describe the sampling program, analytical methods, structure of the data record, and how to access all measurements made from 1969 through 2015. We provide a summary of how these data have been used by USGS and other researchers to deepen understanding of how estuaries are structured and function differently from the river and ocean ecosystems they bridge.

Mathematical modelling for distribution of heavy metals in estuary area of Red River (Vietnam)

NASA Astrophysics Data System (ADS)

Nguyen, N. T. T.; Volkova, I. V.

2018-05-01

In this paper, the authors studied the features of spatial distribution of some heavy metals (Pb, Hg, As) in the system “suspended substance - bottom sediments” in the mouth area of the Red River (Vietnam). A mathematical modelling for diffusion processes of heavy metals in a suspended form, in bottom sediments and the spatial analysis for the results of these models were proposed and implemented. The studies were carried out during main hydrological seasons of 2014 - 2016 (during the flood and inter-natal periods). The propagation of heavy metals was modeled by solving the equation of turbulent diffusion. A spatial analysis of the content of heavy metals in the suspended form and in the bottom sediments was implemented by using the interpolation model in ArcGIS 10.2.2. The distribution of Pb, Hg, As concentration of the suspended form and bottom sediment phases in the estuary area of the Red River was characterized by maximum in the mouths of the branches and general decreasing gradient towards the sea. Maximum concentrations of Pb, Hg in suspended forms were observed in the surface layer of water at the river-sea barrier. The content of Hg and As in the estuary region of the Red River was observed in the following order: SSsurf< SSbott< BS; and content of Pb – SS >BS.

Surveying shrimp aquaculture pond activity using multitemporal VHSR satellite images - case study from the Perancak estuary, Bali, Indonesia.

PubMed

Gusmawati, Niken; Soulard, Benoît; Selmaoui-Folcher, Nazha; Proisy, Christophe; Mustafa, Akhmad; Le Gendre, Romain; Laugier, Thierry; Lemonnier, Hugues

2018-06-01

From the 1980's, Indonesian shrimp production has continuously increased through a large expansion of cultured areas and an intensification of the production. As consequences of diseases and environmental degradations linked to this development, there are currently 250,000ha of abandoned ponds in Indonesia. To implement effective procedure to undertake appropriate aquaculture ecosystem assessment and monitoring, an integrated indicator based on four criteria using very high spatial optical satellite images, has been developed to discriminate active from abandoned ponds. These criteria were: presence of water, aerator, feeding bridge and vegetation. This indicator has then been applied to the Perancak estuary, a production area in decline, to highlight the abandonment dynamic between 2001 and 2015. Two risk factors that could contribute to explain dynamics of abandonment were identified: climate conditions and pond locations within the estuary, suggesting that a spatial approach should be integrated in planning processes to operationalize pond rehabilitation. Copyright © 2017 Elsevier Ltd. All rights reserved.

Implementing the Biological ConditionGradient Framework for Management of Estuaries and Coasts

EPA Science Inventory

The Biological Condition Gradient (BCG) is a conceptual scientific framework for interpreting biological response to increasing effects of stressors on aquatic ecosystems (U.S. EPA 2016). The framework was developed from common patterns of biological response to stressors observe...

A Random Forest Approach to Predict the Spatial Distribution ...

EPA Pesticide Factsheets

Modeling the magnitude and distribution of sediment-bound pollutants in estuaries is often limited by incomplete knowledge of the site and inadequate sample density. To address these modeling limitations, a decision-support tool framework was conceived that predicts sediment contamination from the sub-estuary to broader estuary extent. For this study, a Random Forest (RF) model was implemented to predict the distribution of a model contaminant, triclosan (5-chloro-2-(2,4-dichlorophenoxy)phenol) (TCS), in Narragansett Bay, Rhode Island, USA. TCS is an unregulated contaminant used in many personal care products. The RF explanatory variables were associated with TCS transport and fate (proxies) and direct and indirect environmental entry. The continuous RF TCS concentration predictions were discretized into three levels of contamination (low, medium, and high) for three different quantile thresholds. The RF model explained 63% of the variance with a minimum number of variables. Total organic carbon (TOC) (transport and fate proxy) was a strong predictor of TCS contamination causing a mean squared error increase of 59% when compared to permutations of randomized values of TOC. Additionally, combined sewer overflow discharge (environmental entry) and sand (transport and fate proxy) were strong predictors. The discretization models identified a TCS area of greatest concern in the northern reach of Narragansett Bay (Providence River sub-estuary), which was validated wi

CONDITION OF ESTUARIES OF CALIFORNIA FOR 1999: A STATISTICAL SUMMARY

EPA Science Inventory

As a part of the National Coastal Assessment (NCA), the Western Pilot Study under the Environmental Monitoring and Assessment Program (EMAP) initiated a five year Coastal component in 1999. The objectives of the program were: to assess the condition of estuarine resources of Was...

CONDITION OF ESTUARIES OF THE WESTERN UNITED STATES FOR 1999: A STATISTICAL SUMMARY

EPA Science Inventory

As a part of the National Coastal Assessment, the Environmental Monitoring and Assessment Program (EMAP) initiated a five-year Western Coastal component in 1999. The objectives of the program were: to assess the condition of estuarine resources of Washington, Oregon and Californ...

Food and feeding habits of larval striped bass: an analysis of larval striped bass stomachs from 1976 Potomac Estuary collections. Potomac River fisheries program. Final report. [Morone saxatilis

DOE Office of Scientific and Technical Information (OSTI.GOV)

Beaven, M.; Mihursky, J.

1980-01-01

The stomachs of 605 striped bass (Morone saxatilis) larvae collected from the Potomac River Estuary during the spring of 1976 were examined, and food organisms identified to species when possible. Copepods, cladocerans, and rotifers were the most abundant organisms found. Electivity indices indicated positive selection for the larger stages of copepods and cladocerans, and negative selection for copepod nauplii and most rotifer species, regardless of the size or stage of striped bass larvae.

Trends in developed land cover adjacent to habitat for threatened salmon in Puget Sound, Washington, USA.

PubMed

Bartz, Krista K; Ford, Michael J; Beechie, Timothy J; Fresh, Kurt L; Pess, George R; Kennedy, Robert E; Rowse, Melinda L; Sheer, Mindi

2015-01-01

For widely distributed species at risk, such as Pacific salmon (Oncorhynchus spp.), habitat monitoring is both essential and challenging. Only recently have widespread monitoring programs been implemented for salmon habitat in the Pacific Northwest. Remote sensing data, such as Landsat images, are therefore a useful way to evaluate trends prior to the advent of species-specific habitat monitoring programs. We used annual (1986-2008) land cover maps created from Landsat images via automated algorithms (LandTrendr) to evaluate trends in developed (50-100% impervious) land cover in areas adjacent to five types of habitat utilized by Chinook salmon (O. tshawytscha) in the Puget Sound region of Washington State, U.S.A. For the region as a whole, we found significant increases in developed land cover adjacent to each of the habitat types evaluated (nearshore, estuary, mainstem channel, tributary channel, and floodplain), but the increases were small (<1% total increase from 1986 to 2008). For each habitat type, the increasing trend changed during the time series. In nearshore, mainstem, and floodplain areas, the rate of increase in developed land cover slowed in the latter portion of the time series, while the opposite occurred in estuary and tributary areas. Watersheds that were already highly developed in 1986 tended to have higher rates of development than initially less developed watersheds. Overall, our results suggest that developed land cover in areas adjacent to Puget Sound salmon habitat has increased only slightly since 1986 and that the rate of change has slowed near some key habitat types, although this has occurred within the context of a degraded baseline condition.

Trends in Developed Land Cover Adjacent to Habitat for Threatened Salmon in Puget Sound, Washington, U.S.A.

PubMed Central

Bartz, Krista K.; Ford, Michael J.; Beechie, Timothy J.; Fresh, Kurt L.; Pess, George R.; Kennedy, Robert E.; Rowse, Melinda L.; Sheer, Mindi

2015-01-01

For widely distributed species at risk, such as Pacific salmon (Oncorhynchus spp.), habitat monitoring is both essential and challenging. Only recently have widespread monitoring programs been implemented for salmon habitat in the Pacific Northwest. Remote sensing data, such as Landsat images, are therefore a useful way to evaluate trends prior to the advent of species-specific habitat monitoring programs. We used annual (1986-2008) land cover maps created from Landsat images via automated algorithms (LandTrendr) to evaluate trends in developed (50-100% impervious) land cover in areas adjacent to five types of habitat utilized by Chinook salmon (O. tshawytscha) in the Puget Sound region of Washington State, U.S.A. For the region as a whole, we found significant increases in developed land cover adjacent to each of the habitat types evaluated (nearshore, estuary, mainstem channel, tributary channel, and floodplain), but the increases were small (<1% total increase from 1986 to 2008). For each habitat type, the increasing trend changed during the time series. In nearshore, mainstem, and floodplain areas, the rate of increase in developed land cover slowed in the latter portion of the time series, while the opposite occurred in estuary and tributary areas. Watersheds that were already highly developed in 1986 tended to have higher rates of development than initially less developed watersheds. Overall, our results suggest that developed land cover in areas adjacent to Puget Sound salmon habitat has increased only slightly since 1986 and that the rate of change has slowed near some key habitat types, although this has occurred within the context of a degraded baseline condition. PMID:25923327

Oceans and Coasts

EPA Pesticide Factsheets

An overview of EPA’s oceans, coasts, estuaries and beaches programs and the regulatory (permits/rules) and non-regulatory approaches for managing their associated environmental issues, such as water pollution and climate change.

Water quality measurements in San Francisco Bay by the U.S. Geological Survey, 1969–2015

PubMed Central

Schraga, Tara S.; Cloern, James E.

2017-01-01

The U.S. Geological Survey (USGS) maintains a place-based research program in San Francisco Bay (USA) that began in 1969 and continues, providing one of the longest records of water-quality measurements in a North American estuary. Constituents include salinity, temperature, light extinction coefficient, and concentrations of chlorophyll-a, dissolved oxygen, suspended particulate matter, nitrate, nitrite, ammonium, silicate, and phosphate. We describe the sampling program, analytical methods, structure of the data record, and how to access all measurements made from 1969 through 2015. We provide a summary of how these data have been used by USGS and other researchers to deepen understanding of how estuaries are structured and function differently from the river and ocean ecosystems they bridge. PMID:28786972

Intellectual Estuaries: Connecting Learning and Creativity in Programs of Advanced Academics

ERIC Educational Resources Information Center

Beghetto, Ronald A.; Kaufman, James C.

2009-01-01

Academic learning and creativity should be overlapping goals that can be simultaneously pursued in programs of advanced academics. However, efforts aimed at nurturing creativity and academic learning sometimes are represented as two related but separate paths; this separation is unnecessary and can undermine the development of creative and…

Ecosystem Services Research Program (ESRP) Albemarle-Pamlico Watershed and Estuary Study (APWES) Research Plan

EPA Science Inventory

The APWES is a place-based study for the U.S. EPA Ecosystem Services Research Program conducted through the collaboration across the EPA Office of Research and Development. The mission of the APWES is to develop ecosystem services science to inform watershed and coastal manageme...

A Random Forest approach to predict the spatial distribution of sediment pollution in an estuarine system

PubMed Central

Kreakie, Betty J.; Cantwell, Mark G.; Nacci, Diane

2017-01-01

Modeling the magnitude and distribution of sediment-bound pollutants in estuaries is often limited by incomplete knowledge of the site and inadequate sample density. To address these modeling limitations, a decision-support tool framework was conceived that predicts sediment contamination from the sub-estuary to broader estuary extent. For this study, a Random Forest (RF) model was implemented to predict the distribution of a model contaminant, triclosan (5-chloro-2-(2,4-dichlorophenoxy)phenol) (TCS), in Narragansett Bay, Rhode Island, USA. TCS is an unregulated contaminant used in many personal care products. The RF explanatory variables were associated with TCS transport and fate (proxies) and direct and indirect environmental entry. The continuous RF TCS concentration predictions were discretized into three levels of contamination (low, medium, and high) for three different quantile thresholds. The RF model explained 63% of the variance with a minimum number of variables. Total organic carbon (TOC) (transport and fate proxy) was a strong predictor of TCS contamination causing a mean squared error increase of 59% when compared to permutations of randomized values of TOC. Additionally, combined sewer overflow discharge (environmental entry) and sand (transport and fate proxy) were strong predictors. The discretization models identified a TCS area of greatest concern in the northern reach of Narragansett Bay (Providence River sub-estuary), which was validated with independent test samples. This decision-support tool performed well at the sub-estuary extent and provided the means to identify areas of concern and prioritize bay-wide sampling. PMID:28738089

Threshold values and management options for nutrients in a catchment of a temperate estuary with poor ecological status

NASA Astrophysics Data System (ADS)

Hinsby, K.; Markager, S.; Kronvang, B.; Windolf, J.; Sonnenborg, T. O.; Thorling, L.

2012-08-01

Intensive farming has severe impacts on the chemical status of groundwater and streams and consequently on the ecological status of dependent ecosystems. Eutrophication is a widespread problem in lakes and marine waters. Common problems are hypoxia, algal blooms, fish kills, and loss of water clarity, underwater vegetation, biodiversity and recreational value. In this paper we evaluate the nitrogen (N) and phosphorus (P) concentrations of groundwater and surface water in a coastal catchment, the loadings and sources of N and P, and their effect on the ecological status of an estuary. We calculate the necessary reductions in N and P loadings to the estuary for obtaining a good ecological status, which we define based on the number of days with N and P limitation, and the corresponding stream and groundwater threshold values assuming two different management options. The calculations are performed by the combined use of empirical models and a physically based 3-D integrated hydrological model of the whole catchment. The assessment of the ecological status indicates that the N and P loads to the investigated estuary should be reduced to levels corresponding to 52 and 56% of the current loads, respectively, to restore good ecological status. Model estimates show that threshold total N (TN) concentrations should be in the range of 2.9 to 3.1 mg l-1 in inlet freshwater (streams) to Horsens estuary and 6.0 to 9.3 mg l-1 in shallow aerobic groundwater (∼ 27-41 mg l-1 of nitrate), depending on the management measures implemented in the catchment. The situation for total P (TP) is more complex, but data indicate that groundwater threshold values are not needed. The stream threshold value for TP to Horsens estuary for the selected management options is 0.084 mg l-1. Regional climate models project increasing winter precipitation and runoff in the investigated region resulting in increasing runoff and nutrient loads to the Horsens estuary and many other coastal waters if present land use and farming practices continue. Hence, lower threshold values are required in many coastal catchments in the future to ensure good status of water bodies and ecosystems.

Monitoring Fecal Indicators and Pathogens in Watersheds: Implementing a Quantitative Microbial Risk Assessment Approach

EPA Science Inventory

- Many of the nation's rivers, lakes, and estuaries are impaired with fecal indicator bacteria. - Fecal contamination from point and non-point sources is responsible for the presence of fecal pathogens in source and recreational waters - Effective compliance with TMDL regulatio...

Hierarchical fameworks for distributional and life history data: Implementation of a new ecoinformatics tool

EPA Science Inventory

Background/Questions/Methods Threats to marine and estuarine species operate over many spatial scales, from nutrient enrichment at the watershed/estuary scale to climate change at a global scale. To address this range of environmental issues, we developed a hierarchical framewor...

Climate Change Risk Management: CRE Adaptation Projects and the Risk Management Process

EPA Pesticide Factsheets

This document describes National Estuary Program partner projects that demonstrate how risk management can be successfully applied to address environmental challenges in our country’s coastal areas.

The U.S. Geological Survey and the Chesapeake Bay; the role of science in environmental restoration

USGS Publications Warehouse

Phillips, Scott

2002-01-01

The Chesapeake Bay is the Nation's largest estuary and historically supported one of the most productive fisheries in the world. In addition to supporting aquatic communities and wildlife, the bay's watershed serves the economic and recreational needs of 15 million people. The fertile soils of the watershed support significant agricultural production. Unfortunately, the commercial, economic, and recreational value of the bay and its watershed has been degraded by poor water quality, loss of habitat, and overharvesting of living resources. Since the early 1980's, the Chesapeake Bay Program, which is a partnership among Maryland, Virginia, Pennsylvania, the District of Columbia, the Federal Government, and the Chesapeake Bay Commission, has been formulating and implementing restoration goals to restore living resources, minimize habitat loss, and reduce the amount of nutrients, sediment, and toxic substances entering the bay. The U.S. Geological Survey has the critical role of providing unbiased scientific information to be used in helping to formulate, implement, and assess the effectiveness of restoration goals in the bay and its watershed.

Evaluation Techniques for the Sandy Point Discovery Center, Great Bay National Estuarine Research Reserve.

ERIC Educational Resources Information Center

Heffernan, Bernadette M.

1998-01-01

Describes work done to provide staff of the Sandy Point Discovery Center with methods for evaluating exhibits and interpretive programming. Quantitative and qualitative evaluation measures were designed to assess the program's objective of estuary education. Pretest-posttest questionnaires and interviews are used to measure subjects' knowledge and…

77 FR 51787 - Notice of Commission Meeting and Public Hearing

Federal Register 2010, 2011, 2012, 2013, 2014

2012-08-27

... DELAWARE RIVER BASIN COMMISSION Notice of Commission Meeting and Public Hearing Notice is hereby... hearing on Wednesday, September 12, 2012. The hearing will be part of the Commission's regularly scheduled... Strategy for the Delaware Estuary and Implementation of the Basin Plan. Items for Public Hearing. The...

Management case study: Tampa Bay, Florida

USGS Publications Warehouse

Morrison, G.; Greening, H.S.; Yates, K.K.

2012-01-01

Tampa Bay, Florida,USA, is a shallow,subtropical estuary that experienced severe cultural eutrophication between the 1940s and 1980s, a period when the human population of its watershed quadrupled. In response, citizen action led to the formation of a public- and private-sector partnership (the Tampa Bay Estuary Program), which adopted a number of management objectives to support the restoration and protection of the bay’s living resources. These included numeric chlorophyll a and water-clarity targets, as well as long-term goals addressing the spatial extent of sea grasses and other selected habitat types, to support estuarine-dependent faunal guilds.

Evolution of sediment metal concentrations in a tidal marsh restoration project.

PubMed

Teuchies, Johannes; Beauchard, Olivier; Jacobs, Sander; Meire, Patrick

2012-03-01

The combination of flood prevention and tidal marsh restoration will be implemented on a large scale in the Schelde estuary (Belgium). Densely populated and industrialized, this estuary was found to be severely contaminated with trace metals. In this study we evaluated the effect of tidal restoration on sediment trace metal concentrations. To asses historical contamination of embanked-, a restored- and natural tidal areas, deep sediment cores were sampled while the evolution of metal concentrations was determined by means of superficial samples taken during 10 sampling campaigns spread over the first 3 years of the restoration project. Metal concentrations in the natural tidal marsh reflected the estuaries' contamination history. Fertilization by irrigation caused high metal concentrations in superficial soil layers of some embanked areas. However, reintroduction of the tide resulted in deposition of a new sediment layer with lower metal concentrations, comparable to the natural tidal marsh. Despite diagenetic mobility of manganese no diagenetic movements of the trace metals were observed during these first three years. Removal of metals from the estuary and burial of contaminated sediments in the restored site emphasize the potential of these restoration projects to decrease metal contamination risks. However, more research under field conditions on the effects of changes in land use and inundation related changes in metal bioavailability is needed to draw clear conclusions on the environmental consequences. Copyright © 2012 Elsevier B.V. All rights reserved.

Solutions Network Formulation Report. The Potential Contribution of the International GPM Program to the NOAA Estuarine Reserves Division's System-wide Monitoring Program

NASA Technical Reports Server (NTRS)

Hilbert, Kent; Anderson, Daniel; Lewis, David

2007-01-01

Data collected via the International GPM Program could be used to provide a solution for the NOAA Estuarine Reserves Division s System-wide Monitoring Program by augmenting in situ rainfall measurements with data acquired via future satellite-acquired precipitation data. This Candidate Solution is in alignment with the Coastal Management National Application and will benefit society by assisting in estuary preservation.

Mosquito production in a rotationally managed impoundment compared to other management techniques.

PubMed

Carlson, D B; O'Bryan, P D

1988-06-01

Mosquito production was monitored by larval dipping for 12 months in a 20.2 ha central east coast Florida salt marsh impoundment which was being managed under a rotational impoundment management (RIM) regime. This regime, implemented to provide mosquito control while retaining natural resource benefits, virtually eliminated salt-marsh Aedes mosquito production from late May through September when the marsh was closed to the estuary and flooded to approximately 1.0 ft NGVD. Anopheles spp. were collected only along the upland marsh edges in relatively low densities. Compared with the management methods of: 1) open to the estuary with culverts and, 2) passive retention of water with flapgate risers, RIM proved to be significantly more effective in reducing mosquito production.

Science is a Day at the Beach.

ERIC Educational Resources Information Center

Fischer, Daniel

1998-01-01

Provides details of a middle school science program that involves students in real fieldwork on a topic of their choice. Focuses on student research in estuary and seashore ecosystems. Includes proposal format and scoring rubric. (DDR)

Adaptation Planning for the National Estuary Program

EPA Pesticide Factsheets

This document is a resource for coastal communities to start planning to adapt to climate change. It describes elements, such as vulnerability assessments and stakeholder outreach, and provides examples as well as suggestions for additional resources.

MANAGING EMAP DATA

EPA Science Inventory

The Environmental Monitoring and Assessment Program (EMAP) collects a great deal of data from landscapes, streams, and estuaries around the country. These data are used primarily by EMAP for assessing the environmental condition of states, watersheds, and political and biogeogr...

Rapid instrument prototyping with open source hardware and software: Application to water quality in hypersaline estuaries.

NASA Astrophysics Data System (ADS)

Loose, B.; O'Shea, R.

2016-02-01

We describe the design and deployment of a water quality sonde that utilizes mobile phone networks for near-real time data telemetry. The REOL or Realtime Estuary Ocean Logger has the unique and valuable capability of logging data internally and simultaneously relaying the information to a webserver using a cellular modem. The internal circuitry consists of a GSM cellular modem, a microcontroller, and an SD card for data storage - these components are low cost, and backed up with circuit diagrams and programming libraries that are published under open source license. This configuration is versatile and is capable of reading instrument output from a broad spectrum of devices, including serial, TTL, analog voltage (0 - 5V), and analog current (typically 4-20 mA). We find the greatest challenges lie in development of smart software that is capable of handling the conditions brought on by this harsh environment. We have programmed the sonde to first determine whether it is submerged by water, and record the temperature on the electronics before deciding whether to telemeter measurements over the cellular network. The Google App EngineTM provides an interactive visualization platform. We have tested the REOL with a variety of water quality sensors. In the configuration described here, we use a thermistor, depth gauge and torroidal conductivity sensor to measure water temperature, water level and conductivity up to 200 mS/cm. The latter is necessary for studies in hypersaline estuaries, where porewater salinity can exceed 100 g/kg. We present data from two estuaries in West Africa and from a longer-term deployment in the Narragansett Bay, Rhode Island.

Assessment of health status of oysters (Crassostreagigas) exposed to environmentally relevant concentrations of Ag and Cu in brackish waters

NASA Astrophysics Data System (ADS)

Rementeria, Ane; Mikolaczyk, Mathilde; Peña, Ainhize; Lanceleur, Laurent; Blanc, Gérard; Soto, Manu; Schäfer, Jörg; Zaldibar, Beñat

2017-12-01

Human activities have altered estuarine environments leading to increased presence of different pollutants including metals. Although the implementation of new environmental policies has caused a considerable decrease in trace metal concentrations in estuaries around the Bay of Biscay, some elements such as copper (Cu) and silver (Ag) are still present in relatively high concentrations. Oysters have been widely used in environmental biomonitoring programs as sentinel organisms. Oysters Crassostrea gigas from an uncontaminated estuary were exposed to sublethal, environmentally relevant concentrations of Cu (2000 ng Cu/L) and Ag (500 ng Ag/L) during 14 days in brackish water (S = 18). A battery of cell and tissue level (exposure) biomarkers at different levels of biological complexity was applied and integrated into the Integrative Biological Response (IBR) index including: metallothionein contents, intralysosomal metal accumulation, digestive gland atrophy and digestive gland tissue integrity. Condition Index (CI) was incorporated into the IBR index as a complementary parameter that reflects the general physiological condition of oysters (organism level). Results indicated an increase in intralysosomal metal accumulation after 7 and 14 days of exposure to Ag together with an increase in the digestive epithelium atrophy and lipofuscin content after 7 days of exposure to Ag. The responses detected with the aid of biomarkers integrated in the IBR index showed higher toxicity in oysters exposed to Ag, inducing the clear onset of detoxification processes which also occurred, to a lower extent, in Cu-exposed oysters.

Collection and analysis of remotely sensed data from the Rhode River Estuary Watershed. [ecological parameters of Chesapeake Bay

NASA Technical Reports Server (NTRS)

Jenkins, D. W.

1972-01-01

NASA chose the watershed of Rhode River, a small sub-estuary of the Bay, as a representative test area for intensive studies of remote sensing, the results of which could be extrapolated to other estuarine watersheds around the Bay. A broad program of ecological research was already underway within the watershed, conducted by the Smithsonian Institution's Chesapeake Bay Center for Environmental Studies (CBCES) and cooperating universities. This research program offered a unique opportunity to explore potential applications for remote sensing techniques. This led to a joint NASA-CBCES project with two basic objectives: to evaluate remote sensing data for the interpretation of ecological parameters, and to provide essential data for ongoing research at the CBCES. A third objective, dependent upon realization of the first two, was to extrapolate photointerpretive expertise gained at the Rhode River watershed to other portions of the Chesapeake Bay.

Choosing optimum station configurations for summarizing water quality characteristics, in 1994 Annual Report, San Francisco Estuary Regional Monitoring Program for Trace Substances: San Francisco Estuary Institute

USGS Publications Warehouse

Cloern, James E.; Cole, Brian E.; Caffrey, J.M.

1996-01-01

In this report, we focus on selection of an “optimum” station configuration for the channel of San Francisco Bay for vertical profiling of water quality. Our analysis is based on the monthly cruises conducted by the USGS under the auspices of the Regional Monitoring Program for Trace Substances (Caffrey et al. 1994; SFEI 1994). The underlying rationale for undertaking the analysis is that the distribution of trace substances is structured, at least in part, by the same forces acting on water quality parameters. This must be true to some extent, as trace substance concentrations are partially dependent on water quality characteristics such as salinity. On the other hand, the quantitative importance of these parameters in accounting for overall variability in individual trace substances is unknown. Furthermore, trace substances have their own unique sources, and these sources may dominate their distribution.

Modeling Mitigation Activities in North Carolina Watersheds

NASA Astrophysics Data System (ADS)

Garcia, A. M.

2017-12-01

Nutrient enrichment and excessive sediment loadings have contributed to the degradation of rivers, lakes and estuaries in North Carolina. The North Carolina Department of Environmental Quality (NCDEQ) has implemented several basin-wide nutrient and sediment management strategies, yet gaps remain in understanding the impact of these strategies given the complexities in quantifying the processes that govern the transport of nutrient and sediment. In particular, improved assessment of the status of nutrient and sediment loadings to lakes and estuaries throughout the state is needed, including characterizing their sources and describing the relative contributions of different areas. The NCDEQ Division of Mitigation Services (DMS) uses watershed planning to identify and prioritize the best locations to implement stream, wetland, and riparian-buffer restoration to improve water quality. To support better decision-making for watershed restoration activities we are developing a SPARROW (SPAtially Referenced Regressions On Watershed attributes) model framework specifically for North Carolina. The SPARROW analysis (developed by the U.S. Geological Survey) relates water-quality monitoring data to better understand the effects of human activities and natural processes on surface-water quality. The core of the model consists of using a nonlinear-regression equation to describe the non-conservative transport of contaminants from point and nonpoint sources on land to rivers, lakes and estuaries through the stream and river network. In this presentation, preliminary total Nitrogen, total Phosphorus, and Total Suspended Solids (TSS) NC-SPARROW models are described that illustrate the SPARROW modeling framework incorporating specific restoration datasets and activity metrics, such as extent of riparian buffer and easements.

Ecological drivers and habitat associations of estuarine bivalves

PubMed Central

Tunberg, Björn G.; Johnston, Cora A.; Barshis, Daniel J.

2015-01-01

Community composition of the infaunal bivalve fauna of the St. Lucie Estuary and southern Indian River Lagoon, eastern Florida was sampled quarterly for 10 years as part of a long-term benthic monitoring program. A total of 38,514 bivalves of 137 taxa were collected and identified. We utilized this data, along with sediment samples and environmental measurements gathered concurrently, to assess the community composition, distribution, and ecological drivers of the infaunal bivalves of this estuary system. Salinity had the strongest influence on bivalve assemblage across the 15 sites, superseding the influences of sediment type, water turbidity, temperature and other environmental parameters. The greatest diversity was found in higher salinity euhaline sites, while the greatest abundance of individual bivalves was found in medium salinity mixohaline sites, the lowest diversity and abundances were found in the low salinity oligohaline sites, demonstrating a strong positive association between salinity and diversity/abundance. Water management decisions for the estuary should incorporate understanding of the role of salinity on bivalve diversity, abundance, and ecosystem function. PMID:26587338

Ecological drivers and habitat associations of estuarine bivalves.

PubMed

McKeon, C Seabird; Tunberg, Björn G; Johnston, Cora A; Barshis, Daniel J

2015-01-01

Community composition of the infaunal bivalve fauna of the St. Lucie Estuary and southern Indian River Lagoon, eastern Florida was sampled quarterly for 10 years as part of a long-term benthic monitoring program. A total of 38,514 bivalves of 137 taxa were collected and identified. We utilized this data, along with sediment samples and environmental measurements gathered concurrently, to assess the community composition, distribution, and ecological drivers of the infaunal bivalves of this estuary system. Salinity had the strongest influence on bivalve assemblage across the 15 sites, superseding the influences of sediment type, water turbidity, temperature and other environmental parameters. The greatest diversity was found in higher salinity euhaline sites, while the greatest abundance of individual bivalves was found in medium salinity mixohaline sites, the lowest diversity and abundances were found in the low salinity oligohaline sites, demonstrating a strong positive association between salinity and diversity/abundance. Water management decisions for the estuary should incorporate understanding of the role of salinity on bivalve diversity, abundance, and ecosystem function.

Environmental and ecological impacts of water supplement schemes in a heavily polluted estuary.

PubMed

Su, Qiong; Qin, Huapeng; Fu, Guangtao

2014-02-15

Water supplement has been used to improve water quality in a heavily polluted river with small base flow. However, its adverse impacts particularly on nearby sensitive ecosystems have not been fully investigated in previous studies. In this paper, using the Shenzhen River estuary in China as a case study, the impacts of two potential water supplement schemes (reclaimed water scheme and seawater scheme) on water quality improvement and salinity alteration of the estuary are studied. The influences of salinity alteration on the dominant mangrove species (Aegiceras corniculatum, Kandelia candel, and Avicennia marina) are further evaluated by comparing the alteration with the historical salinity data and the optimum salinity range for mangrove growth. The results obtained indicate that the targets of water quality improvement can be achieved by implementing the water supplement schemes with roughly the same flow rates. The salinity under the reclaimed water scheme lies in the range of historical salinity variation, and its average value is close to the optimum salinity for mangrove growth. Under the seawater scheme, however, the salinity in the estuary exceeds the range of historical salinity variation and approaches to the upper bound of the survival salinity of the mangrove species which have a relatively low salt tolerance (e.g. A. corniculatum). Therefore, the seawater scheme has negative ecological consequences, while the reclaimed water scheme has less ecological impact and is recommended in this study. Copyright © 2013 Elsevier B.V. All rights reserved.

DOE Office of Scientific and Technical Information (OSTI.GOV)

Roby, Daniel D.; Collis, Ken; Lyons, Donald E.

This study investigates predation by piscivorous waterbirds on juvenile salmonids (Oncorhynchus spp.) from throughout the Columbia River Basin. During 2006, study objectives in the Columbia River estuary, work funded by the Bonneville Power Administration, were to (1) monitor and evaluate previous management initiatives to reduce Caspian tern (Hydroprogne caspia) predation on juvenile salmonids (smolts); (2) measure the impact of double-crested cormorant (Phalacrocorax auritus) predation on smolt survival, and assess potential management options to reduce cormorant predation; and (3) monitor large colonies of other piscivorous waterbirds in the estuary (i.e., glaucous-winged/western gulls [Larus glaucescens/occidentalis]) to determine the potential impacts on smoltmore » survival. Study objectives on the mid-Columbia River, work funded by the Walla Walla District of the U.S. Army Corps of Engineers, were to (1) measure the impact of predation by Caspian terns and double-crested cormorants on smolt survival; and (2) monitor large nesting colonies of other piscivorous waterbirds (i.e., California gulls [L. californicus], ring-billed gulls [L. delawarensis], American white pelicans [Pelecanus erythrorhynchos]) on the mid-Columbia River to determine the potential for significant impacts on smolt survival. Our efforts to evaluate system-wide losses of juvenile salmonids to avian predation indicated that Caspian terns and double-crested cormorants were responsible for the vast majority of smolt losses to avian predators in the Columbia Basin, with most losses occurring in the Columbia River estuary. In 2006, East Sand Island in the Columbia River estuary supported the largest known breeding colonies of Caspian terns and double-crested cormorants in the world. The Caspian tern colony on East Sand Island consisted of about 9,200 breeding pairs in 2006, up slightly (but not significantly so) from the estimate of colony size in 2005 (8,820 pairs). There has not been a statistically significant change in the size of the Caspian tern colony on East Sand Island since 2000. Tern nesting success averaged 0.72 fledglings per breeding pair in 2006, significantly higher than in 2005 (0.37 fledglings per breeding pair), a year of poor ocean conditions. Despite the presumably higher availability of marine forage fishes in 2006, the proportion of juvenile salmonids in diets of Caspian terns (32% of prey items) averaged higher than in 2005 (23% of prey items) and 2004 (18% of prey items). Steelhead smolts were particular vulnerable to predation by East Sand Island terns in 2006, with predation rates as high as 20% on particular groups of PIT-tagged fish reaching the estuary. Consumption of juvenile salmonids by terns nesting at the East Sand Island colony in 2006 was approximately 5.3 million smolts (95% c.i. = 4.4-6.2 million), significantly higher than the estimated 3.6 million smolts consumed in 2005, but still roughly 7 million fewer smolts consumed compared to 1998 (when all terns nested on Rice Island in the upper estuary). Caspian terns nesting on East Sand Island continue to rely primarily on marine forage fishes as a food supply, even in 2005 when availability of marine forage fishes declined due to poor ocean conditions. Further management of Caspian terns to reduce losses of juvenile salmonids would be implemented under the Caspian Tern Management Plan for the Columbia River Estuary; the Records of Decision (RODs) authorizing implementation of the plan were signed in November 2006. The ROD lists as the management goal the redistribution of approximately half of the East Sand Island Caspian tern colony to alternative colony sites in interior Oregon and San Francisco Bay, California (USFWS 2006). Implementation of the management plan is stalled, however, because of the lack of appropriated funds.« less

A dynamic water-quality modeling framework for the Neuse River estuary, North Carolina

USGS Publications Warehouse

Bales, Jerad D.; Robbins, Jeanne C.

1999-01-01

As a result of fish kills in the Neuse River estuary in 1995, nutrient reduction strategies were developed for point and nonpoint sources in the basin. However, because of the interannual variability in the natural system and the resulting complex hydrologic-nutrient inter- actions, it is difficult to detect through a short-term observational program the effects of management activities on Neuse River estuary water quality and aquatic health. A properly constructed water-quality model can be used to evaluate some of the potential effects of manage- ment actions on estuarine water quality. Such a model can be used to predict estuarine response to present and proposed nutrient strategies under the same set of meteorological and hydrologic conditions, thus removing the vagaries of weather and streamflow from the analysis. A two-dimensional, laterally averaged hydrodynamic and water-quality modeling framework was developed for the Neuse River estuary by using previously collected data. Development of the modeling framework consisted of (1) computational grid development, (2) assembly of data for model boundary conditions and model testing, (3) selection of initial values of model parameters, and (4) limited model testing. The model domain extends from Streets Ferry to Oriental, N.C., includes seven lateral embayments that have continual exchange with the main- stem of the estuary, three point-source discharges, and three tributary streams. Thirty-five computational segments represent the mainstem of the estuary, and the entire framework contains a total of 60 computa- tional segments. Each computational cell is 0.5 meter thick; segment lengths range from 500 meters to 7,125 meters. Data that were used to develop the modeling framework were collected during March through October 1991 and represent the most comprehensive data set available prior to 1997. Most of the data were collected by the North Carolina Division of Water Quality, the University of North Carolina Institute of Marine Sciences, and the U.S. Geological Survey. Limitations in the modeling framework were clearly identified. These limitations formed the basis for a set of suggestions to refine the Neuse River estuary water-quality model.

DEVELOPMENT OF NITROGEN LOAD-REPONSE RELATIONSHIPS FOR ESTUARIES

EPA Science Inventory

A research program is currently underway to meet the United States Environmental Protection Agency's need to develop nutrient criteria for estuarine and coastal marine waters. This research is intended to develop nitrogen load-response relationships for submerged aquatic vegetati...

COASTAL ECOLOGICAL DATA FROM THE VIRGINIAN BIOGEOGRAPHIC PROVINCE 1990-1993

EPA Science Inventory

The U.S. Environmental Protection Agency's Environmental Monitoring and Assessment Program (EMAP) assessed the ecological condition of estuaries, bays, and tidal rivers in the Virginian Biogeographic Province (Cape Cod, Massachusetts, to Cape Henry, Virginia) during July?Septembe...

Simulation of hydrodynamics and solute transport in the Pamlico River estuary, North Carolina

USGS Publications Warehouse

Bales, Jerad; Robbins, Jeanne C.

1995-01-01

An investigation was conducted to characterize flow, circulation, and solute transport in the Pamlico River estuary, North Carolina. The study included a detailed field-measurement program and the calibration, validation, and application of a physically realistic numerical model of hydro- dynamics and transport. Water level, salinity, water temperature, wind speed and direction, and current data were collected during March 1988 through September 1992, and were used to characterize physical conditions in the estuary. Data from pre- existing streamflow gaging stations and meteoro- logical stations were also used. A two-dimensional vertically averaged hydrodynamic and solute transport model was applied to the 48-kilometer study reach. The model domain was discretized into 5,620 separate 200- by 200-meter computational cells. Model calibration was achieved through adjustment of parameters for June 14-30, 1991. Data from selected periods in 1989 and 1991 were used for model validation. Water levels used for model calibration and validation ranged from -0.052 to 0.698 meter; salinities ranged from 0.1 to 13.1 parts per thousand; and wind speeds ranged from calm to 22 meters per second. The model was tested for stratified and unstratified conditions. Simulated and observed data were used to evaluate model performance. The calibrated model was applied for selected periods in 1989 and 1991. Instantaneous flows were simulated at each boundary and at mid- estuary. Circulation patterns were characterized using vector plots, particle tracking, and solute transport. Particle tracks showed that materials released at mid-estuary may remain in the system for 25 days or longer.

Blueprint for a Coastal Legacy: Connecticut Sea Grant Strategic Plan 2007-2013

ERIC Educational Resources Information Center

Connecticut Sea Grant (NJ1), 2009

2009-01-01

For nearly 20 years, the Connecticut Sea Grant College Program (CTSG) has worked to foster the wise use and conservation of coastal and marine resources of the Long Island Sound (LIS) estuary, as well as working regionally, nationally and globally. The strategy for success of any individual Sea Grant College Program must be consistent with the…

Vulnerability Assessments in Support of the Climate Ready ...

EPA Pesticide Factsheets

As part of the Climate Ready Estuaries (CRE) program, the Global Change Research Program (GCRP) in the National Center for Environmental Assessment, Office of Research and Development at the U.S. Environmental Protection Agency has prepared this draft report exploring a new methodology for climate change vulnerability assessments using San Francisco Bay’s salt marsh and mudflat ecosystems as a demonstration. N/A

Threshold values and management options for nutrients in a catchment of a temperate estuary with poor ecological status

NASA Astrophysics Data System (ADS)

Hinsby, K.; Markager, S.; Kronvang, B.; Windolf, J.; Sonnenborg, T. O.; Thorling, L.

2012-02-01

Intensive farming has severe impacts on the chemical status of groundwater and streams and consequently on the ecological status of dependent ecosystems. Eutrophication is a widespread problem in lakes and marine waters. Common problems are hypoxia, algal blooms and fish kills, and loss of water clarity, underwater vegetation, biodiversity, and recreational value. In this paper we evaluate the nitrogen (N) and phosphorus (P) chemistry of groundwater and surface water in a coastal catchment, the loadings and sources of N and P and their effect on the ecological status of an estuary. We calculate the necessary reductions in N and P loadings to the estuary for obtaining a good ecological status, which we define based on the number of days with N and P limitation, and the equivalent stream and groundwater threshold values assuming two different management options. The calculations are performed by the combined use of empirical models and a physically based 3-D integrated hydrological model of the whole catchment. The assessment of the ecological status indicates that the N and P loads to the investigated estuary should be reduced by a factor of 0.52 and 0.56, respectively, to restore good ecological status. Model estimates show that threshold total N concentrations should be in the range of 2.9 to 3.1 mg l-1 in inlet freshwater to Horsens Estuary and 6.0 to 9.3 mg l-1 in shallow aerobic groundwater (∼27-41 mg l-1 of nitrate), depending on the management measures implemented in the catchment. The situation for total P is more complex but data indicate that groundwater threshold values are not needed. The inlet freshwater threshold value for total P to Horsens Estuary for the selected management options is 0.084 mg l-1. Regional climate models project increasing winter precipitation and runoff in the investigated region resulting in increasing runoff and nutrient loads to coastal waters if present land use and farming practices continue. Hence, lower threshold values are required in the future to ensure good status of all water bodies and ecosystems.

Improving the Representation of Estuarine Processes in Earth System Models

NASA Astrophysics Data System (ADS)

Sun, Q.; Whitney, M. M.; Bryan, F.; Tseng, Y. H.

2016-12-01

The exchange of freshwater between the rivers and estuaries and the open ocean represents a unique form of scale-interaction in the climate system. The local variability in the terrestrial hydrologic cycle is integrated by rivers over potentially large drainage basins (up to semi-continental scales), and is then imposed on the coastal ocean at the scale of a river mouth. Appropriately treating riverine freshwater discharge into the oceans in Earth system models is a challenging problem. Commonly, the river runoff is discharged into the ocean models with zero salinity and arbitrarily distributed either horizontally or vertically over several grid cells. Those approaches entirely neglect estuarine physical processes that modify river inputs before they reach the open ocean. A physically based Estuary Box Model (EBM) is developed to parameterize the mixing processes in estuaries. The EBM has a two-layer structure representing the mixing processes driven by tides and shear flow within the estuaries. It predicts the magnitude of the mixing driven exchange flow, bringing saltier lower-layer shelf water into the estuary to mix with river water prior to discharge to the upper-layer open ocean. The EBM has been tested against observations and high-resolution three-dimensional simulations of the Columbia River estuary, showing excellent agreement in the predictions of the strength of the exchange flow and the salinity of the discharged water, including modulation with the spring-neap tidal cycle. The EBM is implemented globally at every river discharge point of the Community Earth System Model (CESM). In coupled ocean-sea ice experiments driven by CORE surface forcing, the sea surface salinity (SSS) in the coastal ocean is increased globally compared to the standard model, contributing to a decrease in coastal stratification. The SSS near the mouths of some of the largest rivers is decreased due to the reduction in the area over which riverine fresh water is discharged. The results from experiments with the fully coupled CESM are broadly consistent, supporting the inclusion of the parameterization in CESM version 2 to be released in late 2016.

Using a composite grid approach in a complex coastal domain to estimate estuarine residence time

USGS Publications Warehouse

Warner, John C.; Geyer, W. Rockwell; Arango, Herman G.

2010-01-01

We investigate the processes that influence residence time in a partially mixed estuary using a three-dimensional circulation model. The complex geometry of the study region is not optimal for a structured grid model and so we developed a new method of grid connectivity. This involves a novel approach that allows an unlimited number of individual grids to be combined in an efficient manner to produce a composite grid. We then implemented this new method into the numerical Regional Ocean Modeling System (ROMS) and developed a composite grid of the Hudson River estuary region to investigate the residence time of a passive tracer. Results show that the residence time is a strong function of the time of release (spring vs. neap tide), the along-channel location, and the initial vertical placement. During neap tides there is a maximum in residence time near the bottom of the estuary at the mid-salt intrusion length. During spring tides the residence time is primarily a function of along-channel location and does not exhibit a strong vertical variability. This model study of residence time illustrates the utility of the grid connectivity method for circulation and dispersion studies in regions of complex geometry.

Distribution of heavy metals and environmental assessment of surface sediment of typical estuaries in eastern China.

PubMed

Bi, Shipu; Yang, Yuan; Xu, Chengfen; Zhang, Yong; Zhang, Xiaobo; Zhang, Xianrong

2017-08-15

Estuary sediment is a major pollutant enrichment medium and is an important biological habitat. This sediment has attracted the attention of the marine environmental scientists because it is a more stable and effective medium than water for monitoring regional environmental quality conditions and trends. Based on a large amount of measurement data, we analyzed the concentrations, distribution, and sources of seven heavy metals (As, Cd, Cr, Cu, Hg, Pb, and Zn) in the surface sediment of typical estuaries that empty into the sea in eastern China: the Liaohe River Estuary, Yellow River Estuary, Yangtze River Estuary, Minjiang River Estuary, and Pearl River Estuary. The heavy metal concentrations in the sediments vary considerably from one estuary to the next. The Liaohe River Estuary sediment contains elevated levels of Cd, Hg, and Zn. The Yellow River Estuary sediment contains elevated levels of As. The sediments in the Yangtze River and Minjiang River estuaries contain elevated levels of Cd and Cu and of Pb and Zn, respectively. The sediment in the Pearl River Estuary contains elevated levels of all seven heavy metals. We used the Nemerow index method to assess the environment quality. The heavy metal pollution in the Liaohe River and Pearl River estuaries is more severe than that in the other estuaries. Additional work indicates that the heavy metal pollution in the Liaohe River and Pearl River estuaries is caused mainly by human activity. Copyright © 2017. Published by Elsevier Ltd.

DOE Office of Scientific and Technical Information (OSTI.GOV)

Garono, Ralph; Anderson, Becci; Robinson, Rob

The Lower Columbia River Estuary Management Plan (Jerrick, 1991) recognizes the positive relationship between the conservation of fish and wildlife habitat, and sustaining their populations. An important component of fish and wildlife conservation and management is the identification of habitats, trends in habitat change, and delineation of habitat for preservation, restoration or enhancement. Alterations to the environment, such as hydropower generation, dredging, forestry, agriculture, channel alteration, diking, bank stabilization and floodplain development, have dramatically altered both the type and distribution of habitats along the Columbia River Estuary (CRE) and its floodplain. Along the Columbia River, tidally influenced habitats occur frommore » the river mouth to the Bonneville Dam, a distance of 230 km. If we are to effectively manage the natural resources of the Columbia River ecosystem, there is a need to understand how habitats have changed because fish and wildlife populations are known to respond to changes in habitat quality and distribution. The goal of this study was to measure the amount and type of change of CRE land cover from 1992 to 2000. We performed a change analysis on two spatial data sets describing land cover along the lower portion of the estuary (Fig. 1). The 1992 data set was created by the NOAA Coastal Remote Sensing, Coastal Change Analysis Program (C-CAP) in cooperation with Columbia River Estuary Study Task Force (CREST), the National Marine Fisheries Service (NMFS) Point Adams Field Station, and State of Washington Department of Natural Resources (DNR). The 2000 data set was produced by Earth Design Consultants, Inc. (EDC) and the Wetland Ecosystem Team (WET: University of Washington) as part of a larger Lower Columbia River Estuary Partnership (Estuary Partnership) habitat mapping study. Although the image classification methodologies used to create the data sets differed, both data sets were produced by classifying Landsat Thematic Mapper (TM) satellite imagery, making it feasible to assess land cover changes between 1992 and 2000.« less

ENVIRONMENTAL INFLUENCES ON BENTHIC COMMUNITY STRUCTURE IN A GREAT LAKES EMBAYMENT

EPA Science Inventory

An Intensified Environmental Monitoring and Assessment Program (EMAP) sampling grid in the St. Louis River estuary of western Lake Superior was used toassess the relationship between surficial sediment characteristics and benthic community structure. Ninety sites within two habit...

CONTAMINANT CONCENTRATIONS IN WHOLE-BODY FISH AND SHELLFISH FROM U.S. ESTUARIES

EPA Science Inventory

Persistent bioaccumulative and toxic (PBT) pollutants are chemical contaminants that pose risks to ecosystems and human health. For these reasons, available tissue contaminant data from the US EPA Environmental Monitoring and Assessment Program's National Coastal Assessment were...

Contributions to Public Understanding of Science by the Lamont-Doherty Earth Observatory (I): Programs and Workshops

NASA Astrophysics Data System (ADS)

Passow, M. J.; Turrin, M.; Kenna, T. C.; Newton, R.; Buckley, B.

2009-12-01

The Lamont-Doherty Earth Observatory of Columbia University (LDEO) continues its long history of contributions to public understanding of Science through “live” and web-based programs that provide teachers, students, and the other access to new discoveries and updates on key issues. We highlight current activities in paired posters. Part 1 focuses on events held at the Palisades, NY, campus. "Earth2Class (E2C)" is a unique program integrating science content with increased understanding about classroom learning and technology. Monthly workshops allow K-14 participants to combine talks by researchers about cutting-edge investigations with acquisition of background knowledge and classroom-ready applications. E2C has sponsored 100 workshops by more than 60 LDEO scientists for hundreds of teachers. A vast array of resources on includes archived versions of workshops, comprehensive sets of curriculum units, and professional development opportunities. It has been well received by both workshop participants and others who have only accessed the web site. "Hudson River Snapshot Day" celebrates the Hudson River Estuary and educates participants on the uniqueness of our nearby estuary as part of the annual National Estuaries Week. The New York State Department of Environmental Conservation Hudson River Estuary Program and Hudson Basin River Watch coordinate the event. LDEO scientists help coordinate annual data collection by school classes to create a day-in-the-life picture all along the river. LDEO researchers also participate in "River Summer," bringing together participants from a variety of perspectives to look at the Hudson River and foster better understanding of how the same features can appear very differently to artists, writers, political scientists, economists, or scientists. These perspectives aid in recognizing the Hudson’s unique characteristics and history by identifying cross-disciplinary relationships and fostering new connections. LDEO’s Secondary School Field Research Program engages high school teachers and students as science interns. They work with scientists in a 6-week summer program collaborated with the Harlem Childrens' Society and the Columbia Summer Research Program. Participants collect samples of water, soil, air, plants and animals in local wetlands, forests and urban environments. They receive training at LDEO in basic laboratory skills as they measure many of their own samples. Through The Young Women’s Leadership School of East Harlem, students earn Field Science course credits. The Field Research Program also works with teachers to bring inquiry-based, hands-on field and laboratory science into the classroom during the school year. In addition, teachers and students from many other schools in the NYC region have cooperated with LDEO scientists on projects sponsored through NSF-funded Research Experiences, academic year internships, and other formats. The Public Lectures series began in 1999 in celebration of Lamont’s 50th anniversary. Annually since then, selected Lamont researchers give presentations on their current research. LDEO’s efforts to inspire and educate new generations continue to expand each year.

Dissolved oxygen in two Oregon estuaries: Importance of the ocean-estuary connection

EPA Science Inventory

We examined the role of the ocean –estuary connection in influencing periodic reductions in dissolved oxygen (DO) levels in Yaquina and Yachats estuaries, Oregon, USA. In the Yaquina Estuary, there is close coupling between the coastal ocean and the estuary. As a result, low DO ...

Dissolved oxygen in two Oregon estuaries: The importance of the ocean-estuary connection

EPA Science Inventory

We examined the role of the ocean –estuary connection in influencing periodic reductions in dissolved oxygen (DO) levels in Yaquina and Yachats estuaries, Oregon, USA. In the Yaquina Estuary, there is close coupling between the coastal ocean and the estuary. As a result, low DO ...

75 FR 34975 - Notice of Estuary Habitat Restoration Council's Intent to Revise its Estuary Habitat Restoration...

Federal Register 2010, 2011, 2012, 2013, 2014

2010-06-21

... Estuary Habitat Restoration Council's Intent to Revise its Estuary Habitat Restoration Strategy; Request... interagency Estuary Habitat Restoration Council, is providing notice of the Council's intent to revise the ''Estuary Habitat Restoration Strategy'' and requesting public comments to guide its revision. DATES...

Comparisons between the characteristics of ichthyofaunas in nearshore waters of five estuaries with varying degrees of connectivity with the ocean

NASA Astrophysics Data System (ADS)

Hoeksema, S. D.; Chuwen, B. M.; Potter, I. C.

2009-10-01

The characteristics of the fish faunas in nearshore, shallow (<1.2 m) waters of the basins of estuaries along the same coastline, but which were open to the ocean for varying periods, have been determined and compared. The fish faunas of the permanently-open Oyster Harbour, the seasonally-open Broke, Irwin and Wilson inlets and the normally-closed Wellstead Estuary on the south coast of Western Australia were sampled by seine net seasonally for 2 years. Irrespective of the frequency and duration that the estuary mouth was open, the ichthyofauna of each estuary was numerically dominated by three atherinid species and three gobiid species (92.9-99.7%), each of which completes its life cycle within these estuaries. The ichthyofaunal compositions of each estuary differed significantly, however, from that of each other estuary. These differences were largely attributable to the relative abundances of the above six species varying between estuaries, which, in turn, reflected differences in such factors as estuary mouth status, macrophyte cover and salinity. For example, Favonigobius lateralis and Leptatherina presbyteroides, which are also represented by marine populations, were most abundant in the permanently-open estuary (Oyster Harbour), which, in terms of substrate and salinity, most closely resembled the nearshore marine environment. In contrast, Leptatherina wallacei made its greatest contribution in the only estuary to exhibit a protracted period of greatly reduced salinities, which is consistent with its distribution in permanently-open estuaries on the lower west coast of Australia, while Atherinosoma elongata and Pseudogobius olorum were particularly numerous in estuaries containing dense stands of the seagrass Ruppia megacarpa. Marine species made the greatest contribution to species richness in the permanently-open estuary and least in the normally-closed estuary. Species richness was greatest in summer and least in winter in each estuary, but differed markedly between years only in Wilson Inlet. Density of fishes was greatest in the most eutrophic estuary (Wellstead Estuary) and least in the most oligotrophic estuary (Broke Inlet) and only underwent marked seasonal variations in Wilson Inlet and Wellstead Estuary, in which densities fell to their minima in winter. Ichthyofaunal composition varied between years in the Broke and Wilson inlets and Wellstead Estuary, in which there was little or no connection with the ocean in one of those years. Species composition underwent progressive seasonal changes throughout the year in Wellstead Estuary, due to the abundance of certain species peaking at different times of the year.

Dissolved oxygen in two Oregon estuaries: Importance of the ocean-estuary connection - March 2011

EPA Science Inventory

We examined the role of the ocean–estuary connection in influencing periodic reductions in dissolved oxygen (DO) levels in Yaquina and Yachats estuaries, Oregon, USA. In the Yaquina Estuary, there is close coupling between the coastal ocean and the estuary. As a result, low DO w...

Dissolved oxygen in two Oregon estuaries: The importance of the ocean-estuary connection - May 16, 2011

EPA Science Inventory

We examined the role of the ocean –estuary connection in influencing periodic reductions in dissolved oxygen (DO) levels in Yaquina and Yachats estuaries, Oregon, USA. In the Yaquina Estuary, there is close coupling between the coastal ocean and the estuary. As a result, low DO ...

A comparison of CO2 dynamics and air-water fluxes in a river-dominated estuary and a mangrove-dominated marine estuary

NASA Astrophysics Data System (ADS)

Akhand, Anirban; Chanda, Abhra; Manna, Sudip; Das, Sourav; Hazra, Sugata; Roy, Rajdeep; Choudhury, S. B.; Rao, K. H.; Dadhwal, V. K.; Chakraborty, Kunal; Mostofa, K. M. G.; Tokoro, T.; Kuwae, Tomohiro; Wanninkhof, Rik

2016-11-01

The fugacity of CO2 (fCO2 (water)) and air-water CO2 flux were compared between a river-dominated anthropogenically disturbed open estuary, the Hugli, and a comparatively pristine mangrove-dominated semiclosed marine estuary, the Matla, on the east coast of India. Annual mean salinity of the Hugli Estuary (≈7.1) was much less compared to the Matla Estuary (≈20.0). All the stations of the Hugli Estuary were highly supersaturated with CO2 (annual mean 2200 µatm), whereas the Matla was marginally oversaturated (annual mean 530 µatm). During the postmonsoon season, the outer station of the Matla Estuary was under saturated with respect to CO2 and acted as a sink. The annual mean CO2 emission from the Hugli Estuary (32.4 mol C m-2 yr-1) was 14 times higher than the Matla Estuary (2.3 mol C m-2 yr-1). CO2 efflux rate from the Hugli Estuary has increased drastically in the last decade, which is attributed to increased runoff from the river-dominated estuary.

Distribution and assessment of sediment toxicity in Tamaki Estuary, Auckland, New Zealand

NASA Astrophysics Data System (ADS)

Abrahim, G. M. S.; Parker, R. J.; Nichol, S. L.

2007-07-01

Heavy metal levels in surface sediments from Tamaki Estuary demonstrate significant up estuary increases in Cu, Pb, Zn, Cd and mud concentrations. Increased metal levels towards the head of the estuary are linked to local catchment sources reflecting the historical development, industrialisation and urbanisation of catchment areas surrounding the upper estuary. The relatively narrow constriction in the middle estuary (Panmure area), makes it susceptible to accumulation of upper estuary pollutants, since the constriction reduces circulation and extends the time required for fine waterborne sediments in the upper estuary to exchange with fresh coastal water. As a result fine fraction sediments trapped in the upper estuary facilitate capture and retention of pollutants at the head of the estuary. The increase in sandy mud poor sediments towards the mouth of the estuary is associated with generally low metal concentrations. The estuary’s geomorphic shape with a mid estuary constriction, sediment texture and mineralogy and catchment history are significant factors in understanding the overall spatial distribution of contaminants in the estuary. Bulk concentration values for Cu, Pb, Zn, and Cd in all the studied surface samples occur below ANZECC ISQG-H toxicity values. Cd and Cu concentrations are also below the ISQG-L toxicity levels for these elements. However, Pb and Zn concentrations do exceed the ISQG-L values in some of the surface bulk samples in the upper estuary proximal to long established sources of catchment pollution.

EMAP-VIRGINIAN PROVINCE FOUR YEAR ASSESSMENT (1990-1993)

EPA Science Inventory

Assessments with the four years (1990-93) of ecological condition data collected by the USEPA Environmntal Monitoring and Assessment Program (EMAP) in estuaries of the Virginian Biogeographic Province (Cape Henry to Cape Cod) were presented. EMAP data were used to quantify, with ...

40 CFR 35.9050 - Assistance amount.

Code of Federal Regulations, 2014 CFR

2014-07-01

... 40 Protection of Environment 1 2014-07-01 2014-07-01 false Assistance amount. 35.9050 Section 35.9050 Protection of Environment ENVIRONMENTAL PROTECTION AGENCY GRANTS AND OTHER FEDERAL ASSISTANCE STATE AND LOCAL ASSISTANCE Financial Assistance for the National Estuary Program § 35.9050 Assistance...

40 CFR 35.9050 - Assistance amount.

Code of Federal Regulations, 2012 CFR

2012-07-01

... 40 Protection of Environment 1 2012-07-01 2012-07-01 false Assistance amount. 35.9050 Section 35.9050 Protection of Environment ENVIRONMENTAL PROTECTION AGENCY GRANTS AND OTHER FEDERAL ASSISTANCE STATE AND LOCAL ASSISTANCE Financial Assistance for the National Estuary Program § 35.9050 Assistance...

40 CFR 35.9050 - Assistance amount.

Code of Federal Regulations, 2011 CFR

2011-07-01

... 40 Protection of Environment 1 2011-07-01 2011-07-01 false Assistance amount. 35.9050 Section 35.9050 Protection of Environment ENVIRONMENTAL PROTECTION AGENCY GRANTS AND OTHER FEDERAL ASSISTANCE STATE AND LOCAL ASSISTANCE Financial Assistance for the National Estuary Program § 35.9050 Assistance...

40 CFR 35.9050 - Assistance amount.

Code of Federal Regulations, 2010 CFR

2010-07-01

... 40 Protection of Environment 1 2010-07-01 2010-07-01 false Assistance amount. 35.9050 Section 35.9050 Protection of Environment ENVIRONMENTAL PROTECTION AGENCY GRANTS AND OTHER FEDERAL ASSISTANCE STATE AND LOCAL ASSISTANCE Financial Assistance for the National Estuary Program § 35.9050 Assistance...

40 CFR 35.9050 - Assistance amount.

Code of Federal Regulations, 2013 CFR

2013-07-01

... 40 Protection of Environment 1 2013-07-01 2013-07-01 false Assistance amount. 35.9050 Section 35.9050 Protection of Environment ENVIRONMENTAL PROTECTION AGENCY GRANTS AND OTHER FEDERAL ASSISTANCE STATE AND LOCAL ASSISTANCE Financial Assistance for the National Estuary Program § 35.9050 Assistance...

40 CFR 35.9045 - EPA action on application.

Code of Federal Regulations, 2011 CFR

2011-07-01

... Section 35.9045 Protection of Environment ENVIRONMENTAL PROTECTION AGENCY GRANTS AND OTHER FEDERAL ASSISTANCE STATE AND LOCAL ASSISTANCE Financial Assistance for the National Estuary Program § 35.9045 EPA action on application. The Regional Administrator will review each completed application and should...

40 CFR 35.9045 - EPA action on application.

Code of Federal Regulations, 2010 CFR

2010-07-01

... Section 35.9045 Protection of Environment ENVIRONMENTAL PROTECTION AGENCY GRANTS AND OTHER FEDERAL ASSISTANCE STATE AND LOCAL ASSISTANCE Financial Assistance for the National Estuary Program § 35.9045 EPA action on application. The Regional Administrator will review each completed application and should...

Estuarine environments as rearing habitats for juvenile Coho Salmon in contrasting south-central Alaska watersheds

USGS Publications Warehouse

Hoem Neher, Tammy D.; Rosenberger, Amanda E.; Zimmerman, Christian E.; Walker, Coowe M.; Baird, Steven J.

2013-01-01

For Pacific salmon, estuaries are typically considered transitional staging areas between freshwater and marine environments, but their potential as rearing habitat has only recently been recognized. The objectives of this study were two-fold: (1) to determine if Coho Salmon Oncorhynchus kisutch were rearing in estuarine habitats, and (2) to characterize and compare the body length, age, condition, and duration and timing of estuarine occupancy of juvenile Coho Salmon between the two contrasting estuaries. We examined use of estuary habitats with analysis of microchemistry and microstructure of sagittal otoliths in two watersheds of south-central Alaska. Juvenile Coho Salmon were classified as estuary residents or nonresidents (recent estuary immigrants) based on otolith Sr : Ca ratios and counts of daily growth increments on otoliths. The estuaries differed in water source (glacial versus snowmelt hydrographs) and in relative estuarine and watershed area. Juvenile Coho Salmon with evidence of estuary rearing were greater in body length and condition than individuals lacking evidence of estuarine rearing. Coho Salmon captured in the glacial estuary had greater variability in body length and condition, and younger age-classes predominated the catch compared with the nearby snowmelt-fed, smaller estuary. Estuary-rearing fish in the glacial estuary arrived later and remained longer (39 versus 24 d of summer growth) during the summer than did fish using the snowmelt estuary. Finally, we observed definitive patterns of overwintering in estuarine and near shore environments in both estuaries. Evidence of estuary rearing and overwintering with differences in fish traits among contrasting estuary types refute the notion that estuaries function as only staging or transitional habitats in the early life history of Coho Salmon.

Socio-Economic Concerns and Essential Elements in Estuary Management Strategies; Haliç Case, Istanbul

NASA Astrophysics Data System (ADS)

Alpar, Bedri; Isil Cetin, Basak

2016-04-01

Estuaries are transitional areas between the land and sea and home to a large and growing proportion of the world's population. They are highly productive ecosystems which create jobs, and boosts local economic growth with a higher percentage of collective and private enterprises and a larger share of production. They serve many important socio-economic functions and therefore receive untreated urban wastes and riverine inputs and concentrate various pollutants coming from inland domestic, agricultural and industrial activities. Therefore such kinds of complex systems are highly vulnerable because they are usually the sink for the hinterlands. Due to serious environmental problems felt more intensively day by day, central and local governments must adopt an integrated policy and decision making process to promote a balance of uses. As surrounded by many historical attractions, heritage sites, buzzing cultural scenes and other natural resources, the Haliç (the Golden Horn estuary) offers great opportunities and has a vitality fed by widespread economic and cultural factors. The typical landscape of the estuary, its bridges, geomorphic features, oceanographic and hydrodynamic features of its waters, sea bottom characteristics, environmental pollution, make this estuary a critical marine environment which impacts to economy, environment and community. However, rapid urban growth and uncontrolled industrial development (1950-1985) led to a severe increase in pollution levels of its water and cohesive sediments. The siltation due to liquid and solid waste dumped by two streams caused anaerobic decomposition problems. In addition, the ecological processes occurring in the Haliç are rather complex as they are interacted with the socio-economic system. This study focuses on the essential elements of integrated coastal zone management for the Haliç, and its probable impacts to economy, environment and community. All objectives and probable impacts need to be integrated by collecting information, understanding, planning, decision making, management and monitoring of implementation.

Sediment Transport at River Lima Estuary: Developing a Sound Methodology to Assess Sediment River Basin Input to an Erosion Prone Coast (NW Iberian Peninsula)

NASA Astrophysics Data System (ADS)

Pinho, J.; Costa, N.; Venâncio, S.; Martins, M.; Vieira, J.; Granja, H.

2016-12-01

The NW coast of Iberian Peninsula is mainly formed by rocky cliffs northern of the river Minho mouth and by narrow sandy beaches south of this river. These beaches are mainly in a sedimentary deficit status resulting from the north-south longitudinal drift driven by the dominant wave climate that acts from the NW direction. In this scenario understand and quantify river sediment inputs to the coast is crucial in order to follow a sustainable management policy to mitigate erosion impacts both in the natural and social environments. This work will present results from research conducted at rive Lima Estuary, one of the rivers flowing to the NW Iberian coast, based on both numerical modeling and field data acquisition. A hydrological model of the river basin and a detailed morphodynamic model of the estuary were implemented. Instrumentation of the estuary that is being conducted comprises traditional sensor pressures and new ones that are being designed and assembled to be installed at different measurement stations within the estuary. Modelling results for flood events showed that the river is capable of remove all the sediments that are deposited in the narrow estuarine canal located near the river mouth. Some of these sediments are immediately deposited downstream, within the interior of the harbor. Here, there is a strong possibility of silting of the river mouth and the central area of the harbor. Since the river flows during extreme events are controlled by an upstream reservoir, the capacity of the river to transport sediments to the coast was lowered during the last decades, which, moreover, requires dredging works over the years to maintain navigation depth requirements. Dredging sediments should be correctly deposited at the coast in order to properly feed the longitudinal drift, otherwise they will be out of the system, which aggravate the installed erosion tendency.

Drivers of change in estuarine-coastal ecosystems: Discoveries from four decades of study in San Francisco Bay

USGS Publications Warehouse

Cloern, J.E.; Jassby, A.D.

2012-01-01

Poised at the interface of rivers, ocean, atmosphere and dense human settlement, estuaries are driven by a large array of natural and anthropogenic forces. San Francisco Bay exemplifies the fast-paced change occurring in many of the world's estuaries, bays and inland seas in response to these diverse forces. We use observations from this particularly well-studied estuary to illustrate responses to six drivers that are common agents of change where land and sea meet: water consumption and diversion; human modification of sediment supply; introduction of non-native species; sewage input; environmental policy; and climate shifts. In San Francisco Bay, responses to these drivers include, respectively, shifts in the timing and extent of freshwater inflow and salinity intrusion; decreasing turbidity; restructuring of plankton communities; nutrient enrichment; elimination of hypoxia and reduced metal contamination of biota; and food web changes that decrease resistance of the estuary to nutrient pollution. Detection of these changes and discovery of their causes through environmental monitoring have been essential for establishing and measuring outcomes of environmental policies that aim to maintain high water quality and sustain services provided by estuarine-coastal ecosystems. The wide range of variability time scales and the multiplicity of interacting drivers place heavy demands on estuarine monitoring programs. But the San Francisco Bay case study illustrates why the imperative for monitoring has never been greater.

Drivers of change in estuarine-coastal ecosystems: Discoveries from four decades of study in San Francisco Bay

NASA Astrophysics Data System (ADS)

Cloern, James E.; Jassby, Alan D.

2012-12-01

Poised at the interface of rivers, ocean, atmosphere and dense human settlement, estuaries are driven by a large array of natural and anthropogenic forces. San Francisco Bay exemplifies the fast-paced change occurring in many of the world's estuaries, bays, and inland seas in response to these diverse forces. We use observations from this particularly well-studied estuary to illustrate responses to six drivers that are common agents of change where land and sea meet: water consumption and diversion, human modification of sediment supply, introduction of nonnative species, sewage input, environmental policy, and climate shifts. In San Francisco Bay, responses to these drivers include, respectively, shifts in the timing and extent of freshwater inflow and salinity intrusion, decreasing turbidity, restructuring of plankton communities, nutrient enrichment, elimination of hypoxia and reduced metal contamination of biota, and food web changes that decrease resistance of the estuary to nutrient pollution. Detection of these changes and discovery of their causes through environmental monitoring have been essential for establishing and measuring outcomes of environmental policies that aim to maintain high water quality and sustain services provided by estuarine-coastal ecosystems. The many time scales of variability and the multiplicity of interacting drivers place heavy demands on estuarine monitoring programs, but the San Francisco Bay case study illustrates why the imperative for monitoring has never been greater.

Nutrient variability and its influence on nitrogen processes in a highly turbid tropical estuary (Bangpakong, Gulf of Thailand).

PubMed

Bordalo, Adriano A; Chalermwat, Kashane; Teixeira, Catarina

2016-07-01

Estuarine ecosystems in SE Asia have been poorly studied when compared to other tropical environments. Important gaps exist particularly in the understanding of their biogeochemical function and contribution to global change. In this work we looked into N-turnover in the water column and sediments of the Bangpakong estuary (13°N). A seasonal sampling program was performed along the salinity gradient covering different stretches of the estuary (68km). Key physical and chemical characteristics were also monitored in order to unravel possible environmental controls. Results showed the occurrence of active denitrification in sediments (5.7-50.9nmol N-N2/(cm(3)·hr)), and water column (3.5-1044pmol N-N2/(cm(3)·hr)). No seasonal or spatial variability was detected for denitrification potential in sediment samples. However, in the water column, the denitrification activity peaked during the transition season in the downstream sites coinciding with high turbidity levels. Therefore, in that period of the year, the water column compartment may be an important contributor to nitrate reduction within the estuary. The rather low nitrification rates detected were not always measurable, probably due to the reduced oxygen content and high siltation. This study is one of the few dealing simultaneously with sediments and water column processes in a highly turbid tropical estuary. Therefore, it emerges as a valuable contribution for the understanding of the dynamics of the nitrogen cycle in tropical environments by exploring the role of estuarine N microbial activity in reducing the effects of increased nitrogen loads. Copyright © 2016. Published by Elsevier B.V.

Comparison of hydro-environmental impacts for ebb-only and two-way generation for a Severn Barrage

NASA Astrophysics Data System (ADS)

Ahmadian, Reza; Falconer, Roger A.; Bockelmann-Evans, Bettina

2014-10-01

Marine renewable energy is playing an increasing significant role in many parts of the world, mainly due to a rise in the awareness of climate change, and its detrimental effects, and the increasing cost of natural resources. The Severn Estuary, located between South West England and South Wales, has a tidal range of up to 14 m which makes it the second highest tidal range in the world. There are a number of barrage proposals amongst various marine renewable energy schemes proposed to be built in the estuary. The Cardiff-Weston STPG (Severn Tidal Power Group) Barrage, which would be one of the world's largest tidal renewable energy schemes if built, is one of the most publicised schemes to-date. This barrage would generate about 17 TWh/annum of power, which is approximately 5% of the UK's electricity consumption, whilst causing significant hydro-environmental and ecological impact on the estuary. This study mainly focuses on investigating the hydro-environmental impacts of the STPG barrage for the option of two-way generation, and compares this with the commonly investigated option of ebb-only generation. The impacts of the barrage were modelled by implementing a linked 1-D/2-D hydro-environmental model, with the capability of modelling several key environmental processes. The model predictions show that the hydro-environmental impacts of the barrage on the Severn Estuary and Bristol Channel, such as changes in the maximum velocity and reduction in suspended sediment and bacteria levels, were less significant for the two-way generation scheme when compared with the corresponding impacts for ebb-only generation.

Spatial and temporal behavior and acute ecotoxicological effects of Tributyltin (TBT) on coral reef and adjacent ecosystems around Okinawa Island, Japan.

NASA Astrophysics Data System (ADS)

Sheikh, M. A.; Higuchi, T.; Imo, T. S.; Fujimura, H.; Oomori, T.

2007-12-01

Spatial and temporal behavior of the tributyl tin (TBT) were investigated in the coastal areas around Okinawa Island, Japan. A seasonal monitoring study was conducted between February and October 2006. The effects of TBT on the carbon metabolisms (net production and calcification) on the intact coral-alga association Galaxea fascicularis were also investigated. Mean concentration of TBT (2.45 ng/L) found in the Manko estuary waters have exceeded some international permissible targets of waters quality guideline for TBT (1ng/L). The sediments in Manko estuary sediments can be considered lightly contaminated (0-20 ng/g dw) and Okukubi estuary as uncontaminated (below 3ng/g dw) with TBT. The seasonal concentration pattern of TBT at the Manko estuary was autumn > spring > summer > winter. The acute ecotoxicological results show that the photosynthesis rate and calcification rate were significantly reduced by 78 % and 72 % relative to the control (ANOVA, p<0.001) when corals were exposed to 5000 ng/LTBT, respectively. No significant effects (ANOVA, p>0.05) were observed when corals were exposed to 1000 ng/LTBT. The present study reports the occurrence and continuous input of TBT in the coastal areas around Okinawa Island, even 16 years after legal restriction of TBT usage in coastal waters was implemented by the Japanese Environmental Authorities. However, the nominal sensitive concentration of TBT that causes alteration of carbon metabolisms of coral within 96 hrs exposure are much higher than those recently found in the coral reef waters and adjacent ecosystems.

Nutrient budgets, marsh inundation under sea-level rise scenarios, and sediment chronologies for the Bass Harbor Marsh estuary at Acadia National Park

USGS Publications Warehouse

Huntington, Thomas G.; Culbertson, Charles W.; Fuller, Christopher C.; Glibert, Patricia; Sturtevant, Luke

2014-01-01

Eutrophication in the Bass Harbor Marsh estuary on Mount Desert Island, Maine, is an ongoing problem manifested by recurring annual blooms of green macroalgae species, principally Enteromorpha prolifera and Enteromorpha flexuosa, blooms that appear in the spring and summer. These blooms are unsightly and impair the otherwise natural beauty of this estuarine ecosystem. The macroalgae also threaten the integrity of the estuary and its inherent functions. The U.S. Geological Survey and Acadia National Park have collaborated for several years to better understand the factors related to this eutrophication problem with support from the U.S. Geological Survey and National Park Service Water Quality Assessment and Monitoring Program. The current study involved the collection of hydrologic and water-quality data necessary to investigate the relative contribution of nutrients from oceanic and terrestrial sources during summer 2011 and summer 2012. This report provides data on nutrient budgets for this estuary, sedimentation chronologies for the estuary and fringing marsh, and estuary bathymetry. The report also includes data, based on aerial photographs, on historical changes from 1944 to 2010 in estuary surface area and data, based on surface-elevation details, on changes in marsh area that may accompany sea-level rise. The LOADEST regression model was used to calculate nutrient loads into and out of the estuary during summer 2011 and summer 2012. During these summers, tidal inputs of ammonium to the estuary were more than seven times greater than the combined inputs in watershed runoff and precipitation. In 2011 tidal inputs of nitrate were about four times greater than watershed plus precipitation inputs, and in 2012 tidal inputs were only slightly larger than watershed plus precipitation inputs. In 2011, tidal inputs of total organic nitrogen were larger than watershed input by a factor of 1.6. By contrast, in 2012 inputs of total organic nitrogen in watershed runoff were much larger than tidal inputs, by a factor of 3.6. During the 2011 and 2012 summers, tidal inputs of total dissolved phosphorus to the estuary were more than seven times greater than inputs in watershed runoff. It is evident that during the summer tidal inputs of inorganic nitrogen and total dissolved phosphorus to the estuary exceed inputs from watershed runoff and precipitation. Projected sea-level rise associated with ongoing climate warming will affect the area of land within the Bass Harbor Marsh estuary watershed that is inundated during conditions of mean higher high water and during mean lower low water and hence will affect the vegetation and marsh area. Given 100-centimeter sea-level rise, the inundated area would increase from 25.7 hectares at the current condition to 77.5 hectares at mean higher high water and from 21.6 hectares to 26.7 hectares at mean lower low water. Given 50-centimeter sea-level rise, flooding of the entire marsh surface, which currently occurs only under the highest spring tides, would occur on average every other day. Radioisotope analysis of sediment cores from the estuary indicates that the sediment accumulation rate increased markedly from 1930 to 1980 and was relatively constant (0.4 to 0.5 centimeter per year) from 1980 to 2009. Similarly, from 1980 to 2009 there was a consistently high mass accumulation rate of 0.09 to 0.11 grams per square centimeter per year. The sediment accretion rates determined for the five cores collected from the marsh surface (east and west sides of the estuary) in 2011 show generally higher rates of 0.20 to 0.29 centimeter per year for the period between 1980 to 2011 than for the period before 1980, when sediment accretion rates were 0.06 to 0.25 centimeter per year. The data in this report provide resource managers at Acadia National Park with a baseline that can be used to evaluate future conditions within the estuary. Climate change, sea-level rise, and land-use change within the estuary’s watershed may influence nutrient dynamics, sedimentation, and eutrophication, and these potential effects can be studied in relation to the baseline data provided in this report. The Route 102 Bridge in Tremont, Maine is constructed over a sill that controls the amount of tidal flushing by restricting the duration of the flood tide, and structural changes to the bridge could alter tidal nutrient inputs and residence times for watershed and ocean-derived nutrients in the estuary. Ongoing sea-level rise is likely increasing ocean-derived nutrients and their residence time in the estuary on the one hand and decreasing the residence time of watershed-derived nutrients on the other.

Magnetic properties of sediments in cores from the Mandovi estuary, western India: Inferences on provenance and pollution.

PubMed

Prajith, A; Rao, V Purnachandra; Kessarkar, Pratima M

2015-10-15

Magnetic properties of sediments were investigated in 7 gravity cores recovered along a transect of the Mandovi estuary, western India to understand their provenance and pollution. The maximum magnetic susceptibility of sediments was at least 6 times higher in the upper/middle estuary than in lower estuary/bay. The χfd% and χARM/SIRM of sediments indicated coarse, multi-domain and pseudo-single domain magnetic grains, resembling ore material in the upper/middle estuary and coarse stable single domain (SSD) to fine SSD grains in the lower estuary/bay. Mineralogy parameters indicated hematite and goethite-dominated sediments in the upper/middle estuary and magnetite-dominated sediments in the lower estuary/bay. Two sediment types were discernible because of deposition of abundant ore material in the upper/middle estuary and detrital sediment in the lower estuary/bay. The enrichment factor and Index of geo-accumulation of metals indicated significant to strong pollution with respect to Fe and Mn in sediments from the upper/middle estuary. Copyright © 2015 Elsevier Ltd. All rights reserved.

SEDIMENT TOXICITY AS AN INDICATOR OF CONTAMINANT STRESS IN EMAP-ESTUARIES

EPA Science Inventory

Toxicity of sediments is widely used in EPA, ACOE, and NOAA monitoring and regulatory programs as a complement to measuring of chemical concentrations as it provides an indication of the bioavailability of sediment contaminants. Sediment toxicity was included as an abiotic condit...

Tampa Bay Ecosystem Services Demonstration Pilot Phase 2 web site

EPA Science Inventory

The value of nature's benefits is difficult to consider in environmental decision-making since ecosystem goods and services are usually not well measured or quantified in economic terms. The Tampa Bay Estuary Program, Tampa Bay Regional Planning Council, the U.S. Environmental Pr...

ASSESSING WATER CLARITY AS A COMPONENT OF WATER QUALITY IN GULF OF MEXICO ESTUARIES

EPA Science Inventory

The U.S. Environmental Protection Agency Environmental Monitoring and Assessment Program (EMAP) uses water clarity as a water quality indicator for integrated assessments. After the publication of the first National Coastal Condition Report, the national water clarity reference v...

BAY REGION ATMOSPHERIC CHEMISTRY EXPERIMENT (BRACE)

EPA Science Inventory

The Tampa Bay Estuary Program (TBEP) was formed in 1991 to assist the community in developing a comprehensive plan to restore and protect Tampa Bay. The ecological indicator of the health of the Bay is the coverage of seagrasses, historically in decline, which are important to...

Performance of selected eastern oyster lines across northeastern US estuaries

USDA-ARS?s Scientific Manuscript database

Eastern oyster production derived from aquaculture has expanded, but growth potential is constrained by losses to disease. Breeding programs supporting industry in the Northeast have targeted resistance to three diseases: MSX, Dermo, and ROD. Selected lines should possess some level of resistance a...

UTILITY OF SPLENIC MACROPHAGE AGGREGATES AS AN INDICATOR OF FISH EXPOSURE TO DEGRADED ENVIRONMENTS

EPA Science Inventory

The utility of splenic macrophage aggregates (MAs) as an indicator of fish exposure to degraded environments was evaluated in several species of estuarine fishes as part of the Environmental Protection Agency's Environmental Monitoring and Assessment Program - Estuaries (EMAP-E)...

Lower Columbia River and Estuary Ecosystem Restoration Program Reference Site Study: 2011 Restoration Analysis - FINAL REPORT

DOE Office of Scientific and Technical Information (OSTI.GOV)

Borde, Amy B.; Cullinan, Valerie I.; Diefenderfer, Heida L.

The Reference Site (RS) study is part of the research, monitoring, and evaluation (RME) effort developed by the Action Agencies (Bonneville Power Administration [BPA], U.S. Army Corps of Engineers, Portland District [USACE], and U.S. Bureau of Reclamation) in response to Federal Columbia River Power System (FCRPS) Biological Opinions (BiOp). While the RS study was initiated in 2007, data have been collected at relatively undisturbed reference wetland sites in the LCRE by PNNL and collaborators since 2005. These data on habitat structural metrics were previously summarized to provide baseline characterization of 51 wetlands throughout the estuarine and tidal freshwater portions ofmore » the 235-km LCRE; however, further analysis of these data has been limited. Therefore, in 2011, we conducted additional analyses of existing field data previously collected for the Columbia Estuary Ecosystem Restoration Program (CEERP) - including data collected by PNNL and others - to help inform the multi-agency restoration planning and ecosystem management work underway in the LCRE.« less

Real-Time monitoring of the eutrophication and hypoxia off the Changjiang Estuary

NASA Astrophysics Data System (ADS)

Chen, J. F.

2016-02-01

Inputs of anthropogenic nutrients and carbon dioxide-rich waters to the coastal waters can not only lead to eutrophication in the surface water and hypoxia in the bottom water, but also will enhance acidification of coastal water. In order to understand the details mechanism of concurrence of eutrophication and hypoxia in the Changjiang Estuary, a real time monitoring system has been established since 2010 under the support of Chinese National Key Technologies R&D Program and Chinese Marine Research Special Funds for Public Welfare Projects. The platforms of the monitoring system includes a 3-meter buoy with water column chain unit and a seabed mounted unit, the sensors includes those can detect wind speed and direction, air and water temperature, salinity, currents, PAR, DO, pH, nutrients, Chl a, turbidity and pCO2 etc.. Two highlights of our scientific findings will introduced in this presentation, one is how typhoon affected the coastal hypoxia (positive and negative), and the other is how fresh water input induced a algal bloom in the Changjiang Estuary in summer.

A comparative study of Northern Ireland's estuaries based on the results of beam trawl fish surveys

NASA Astrophysics Data System (ADS)

Harrison, Trevor D.; Armour, Neil D.; McNeill, Michael T.; Moorehead, Peter W.

2017-11-01

The fish communities of Northern Ireland's estuaries were described and compared using data collected with a modified beam trawl over a six year period from 2009 to 2014. Multivariate analyses identified four estuary groups based on variations in their physico-chemical attributes. These groups broadly corresponded with the distribution and variation of estuary geomorphic types identified around the Irish coast. The dominant fish species captured were also among the main species reported in other North East Atlantic estuaries. A significant link between the estuary types and their fish communities was found; each estuary group contained a somewhat distinctive fish community. The fish communities also showed a significant relationship with the physico-chemical characteristics of the estuaries. Differences in fish species composition are attributed to habitat and environmental preferences of key estuary-associated species.

Coast-wide recruitment dynamics of Olympia oysters reveal limited synchrony and multiple predictors of failure.

PubMed

Wasson, Kerstin; Hughes, Brent B; Berriman, John S; Chang, Andrew L; Deck, Anna K; Dinnel, Paul A; Endris, Charlie; Espinoza, Michael; Dudas, Sarah; Ferner, Matthew C; Grosholz, Edwin D; Kimbro, David; Ruesink, Jennifer L; Trimble, Alan C; Vander Schaaf, Dick; Zabin, Chela J; Zacherl, Danielle C

2016-12-01

Recruitment of new propagules into a population can be a critical determinant of adult density. We examined recruitment dynamics in the Olympia oyster (Ostrea lurida), a species occurring almost entirely in estuaries. We investigated spatial scales of interannual synchrony across 37 sites in eight estuaries along 2,500 km of Pacific North American coastline, predicting that high vs. low recruitment years would coincide among neighboring estuaries due to shared exposure to regional oceanographic factors. Such synchrony in recruitment has been found for many marine species and some migratory estuarine species, but has never been examined across estuaries in a species that can complete its entire life cycle within the same estuary. To inform ongoing restoration efforts for Olympia oysters, which have declined in abundance in many estuaries, we also investigated predictors of recruitment failure. We found striking contrasts in absolute recruitment rate and frequency of recruitment failure among sites, estuaries, and years. Although we found a positive relationship between upwelling and recruitment, there was little evidence of synchrony in recruitment among estuaries along the coast, and only limited synchrony of sites within estuaries, suggesting recruitment rates are affected more strongly by local dynamics within estuaries than by regional oceanographic factors operating at scales encompassing multiple estuaries. This highlights the importance of local wetland and watershed management for the demography of oysters, and perhaps other species that can complete their entire life cycle within estuaries. Estuaries with more homogeneous environmental conditions had greater synchrony among sites, and this led to the potential for estuary-wide failure when all sites had no recruitment in the same year. Environmental heterogeneity within estuaries may thus buffer against estuary-wide recruitment failure, analogous to the portfolio effect for diversity. Recruitment failure was correlated with lower summer water temperature, higher winter salinity, and shorter residence time: all indicators of stronger marine influence on estuaries. Recruitment failure was also more common in estuaries with limited networks of nearby adult oysters. Large existing oyster networks are thus of high conservation value, while estuaries that lack them would benefit from restoration efforts to increase the extent and connectivity of sites supporting oysters. © 2016 by the Ecological Society of America.

Fate, transport, and interactions of heavy metals.

PubMed

Serrano, O R

1995-02-01

Mishandling of hazardous wastes, like their unauthorized disposal in abandoned dump yards or sites, in river beds, estuaries or in the sea, causes substantial damage to the environment and its resources and, given the persistence and toxicity of these pollutants, they can seriously damage human health and quality of life. The importance of controlling management, transport, and disposal of toxic and hazardous substances in the years to come will be a crucial issue in the design and implementation of public policies. This is especially true for residents of such areas as the border between the United States and Mexico, where historically hazardous wastes have been a public health and environmental problem. The aim of this Conference on the Fate, Transport, and Interactions of Metals, A Joint United States-Mexico Conference, co-sponsored by the National Institute of Environmental Health Sciences, Superfund Basic Research Program, the National University of Mexico, Program for the Environment and the Pan American Health Organization, and hosted by the University of Arizona Center for Toxicology, College of Pharmacy, is to begin a joint effort by the United States and Mexico to better understand the complex problems related to heavy metals as hazardous wastes.

Fate, transport, and interactions of heavy metals.

PubMed Central

Serrano, O R

1995-01-01

Mishandling of hazardous wastes, like their unauthorized disposal in abandoned dump yards or sites, in river beds, estuaries or in the sea, causes substantial damage to the environment and its resources and, given the persistence and toxicity of these pollutants, they can seriously damage human health and quality of life. The importance of controlling management, transport, and disposal of toxic and hazardous substances in the years to come will be a crucial issue in the design and implementation of public policies. This is especially true for residents of such areas as the border between the United States and Mexico, where historically hazardous wastes have been a public health and environmental problem. The aim of this Conference on the Fate, Transport, and Interactions of Metals, A Joint United States-Mexico Conference, co-sponsored by the National Institute of Environmental Health Sciences, Superfund Basic Research Program, the National University of Mexico, Program for the Environment and the Pan American Health Organization, and hosted by the University of Arizona Center for Toxicology, College of Pharmacy, is to begin a joint effort by the United States and Mexico to better understand the complex problems related to heavy metals as hazardous wastes. PMID:7621804

Building Regional Threat-Based Networks for Estuaries in the Western United States

PubMed Central

Merrifield, Matthew S.; Hines, Ellen; Liu, Xiaohang; Beck, Michael W.

2011-01-01

Estuaries are ecologically and economically valuable and have been highly degraded from both land and sea. Estuarine habitats in the coastal zone are under pressure from a range of human activities. In the United States and elsewhere, very few conservation plans focused on estuaries are regional in scope; fewer still address threats to estuary long term viability.We have compiled basic information about the spatial extent of threats to identify commonalities. To do this we classify estuaries into hierarchical networks that share similar threat characteristics using a spatial database (geodatabase) of threats to estuaries from land and sea in the western U.S.Our results show that very few estuaries in this region (16%) have no or minimal stresses from anthropogenic activity. Additionally, one quarter (25%) of all estuaries in this study have moderate levels of all threats. The small number of un-threatened estuaries is likely not representative of the ecological variability in the region and will require working to abate threats at others. We think the identification of these estuary groups can foster sharing best practices and coordination of conservation activities amongst estuaries in any geography. PMID:21387006

15 CFR 923.11 - Uses subject to management.

Code of Federal Regulations, 2010 CFR

2010-01-01

..., dunes, estuaries, and wetlands, on salinization of drinking water supplies, and on properties... constitute permissible land uses and water uses within the coastal zone which have a direct and significant impact on the coastal waters. (2) The management program must identify those land and water uses that...

78 FR 46332 - Proposed Information Collection Request; Comment Request; National Estuary Program

Federal Register 2010, 2011, 2012, 2013, 2014

2013-07-31

... FURTHER INFORMATION CONTACT: John McShane, Oceans and Coastal Protection Division, Office of Wetlands... the final FR Notice. Dated: July 22, 2013. Paul Cough, Director, Oceans and Coastal Protection... ENVIRONMENTAL PROTECTION AGENCY [EPA-HQ-OW-2006-0369; FRL-9840-2] Proposed Information Collection...

40 CFR 35.9055 - Evaluation of recipient performance.

Code of Federal Regulations, 2013 CFR

2013-07-01

... 40 Protection of Environment 1 2013-07-01 2013-07-01 false Evaluation of recipient performance. 35.9055 Section 35.9055 Protection of Environment ENVIRONMENTAL PROTECTION AGENCY GRANTS AND OTHER FEDERAL ASSISTANCE STATE AND LOCAL ASSISTANCE Financial Assistance for the National Estuary Program § 35.9055...

40 CFR 35.9055 - Evaluation of recipient performance.

Code of Federal Regulations, 2012 CFR

2012-07-01

... 40 Protection of Environment 1 2012-07-01 2012-07-01 false Evaluation of recipient performance. 35.9055 Section 35.9055 Protection of Environment ENVIRONMENTAL PROTECTION AGENCY GRANTS AND OTHER FEDERAL ASSISTANCE STATE AND LOCAL ASSISTANCE Financial Assistance for the National Estuary Program § 35.9055...

40 CFR 35.9035 - Budget period.

Code of Federal Regulations, 2014 CFR

2014-07-01

... 40 Protection of Environment 1 2014-07-01 2014-07-01 false Budget period. 35.9035 Section 35.9035 Protection of Environment ENVIRONMENTAL PROTECTION AGENCY GRANTS AND OTHER FEDERAL ASSISTANCE STATE AND LOCAL ASSISTANCE Financial Assistance for the National Estuary Program § 35.9035 Budget period. An applicant may...

40 CFR 35.9045 - EPA action on application.

Code of Federal Regulations, 2012 CFR

2012-07-01

... 40 Protection of Environment 1 2012-07-01 2012-07-01 false EPA action on application. 35.9045 Section 35.9045 Protection of Environment ENVIRONMENTAL PROTECTION AGENCY GRANTS AND OTHER FEDERAL ASSISTANCE STATE AND LOCAL ASSISTANCE Financial Assistance for the National Estuary Program § 35.9045 EPA...

40 CFR 35.9035 - Budget period.

Code of Federal Regulations, 2012 CFR

2012-07-01

... 40 Protection of Environment 1 2012-07-01 2012-07-01 false Budget period. 35.9035 Section 35.9035 Protection of Environment ENVIRONMENTAL PROTECTION AGENCY GRANTS AND OTHER FEDERAL ASSISTANCE STATE AND LOCAL ASSISTANCE Financial Assistance for the National Estuary Program § 35.9035 Budget period. An applicant may...

40 CFR 35.9035 - Budget period.

Code of Federal Regulations, 2011 CFR

2011-07-01

... 40 Protection of Environment 1 2011-07-01 2011-07-01 false Budget period. 35.9035 Section 35.9035 Protection of Environment ENVIRONMENTAL PROTECTION AGENCY GRANTS AND OTHER FEDERAL ASSISTANCE STATE AND LOCAL ASSISTANCE Financial Assistance for the National Estuary Program § 35.9035 Budget period. An applicant may...

40 CFR 35.9045 - EPA action on application.

Code of Federal Regulations, 2014 CFR

2014-07-01

... 40 Protection of Environment 1 2014-07-01 2014-07-01 false EPA action on application. 35.9045 Section 35.9045 Protection of Environment ENVIRONMENTAL PROTECTION AGENCY GRANTS AND OTHER FEDERAL ASSISTANCE STATE AND LOCAL ASSISTANCE Financial Assistance for the National Estuary Program § 35.9045 EPA...

40 CFR 35.9035 - Budget period.

Code of Federal Regulations, 2013 CFR

2013-07-01

... 40 Protection of Environment 1 2013-07-01 2013-07-01 false Budget period. 35.9035 Section 35.9035 Protection of Environment ENVIRONMENTAL PROTECTION AGENCY GRANTS AND OTHER FEDERAL ASSISTANCE STATE AND LOCAL ASSISTANCE Financial Assistance for the National Estuary Program § 35.9035 Budget period. An applicant may...

40 CFR 35.9015 - Summary of annual process.

Code of Federal Regulations, 2014 CFR

2014-07-01

... 40 Protection of Environment 1 2014-07-01 2014-07-01 false Summary of annual process. 35.9015 Section 35.9015 Protection of Environment ENVIRONMENTAL PROTECTION AGENCY GRANTS AND OTHER FEDERAL ASSISTANCE STATE AND LOCAL ASSISTANCE Financial Assistance for the National Estuary Program § 35.9015 Summary...

40 CFR 35.9015 - Summary of annual process.

Code of Federal Regulations, 2010 CFR

2010-07-01

... 40 Protection of Environment 1 2010-07-01 2010-07-01 false Summary of annual process. 35.9015 Section 35.9015 Protection of Environment ENVIRONMENTAL PROTECTION AGENCY GRANTS AND OTHER FEDERAL ASSISTANCE STATE AND LOCAL ASSISTANCE Financial Assistance for the National Estuary Program § 35.9015 Summary...

40 CFR 35.9045 - EPA action on application.

Code of Federal Regulations, 2013 CFR

2013-07-01

... 40 Protection of Environment 1 2013-07-01 2013-07-01 false EPA action on application. 35.9045 Section 35.9045 Protection of Environment ENVIRONMENTAL PROTECTION AGENCY GRANTS AND OTHER FEDERAL ASSISTANCE STATE AND LOCAL ASSISTANCE Financial Assistance for the National Estuary Program § 35.9045 EPA...

40 CFR 35.9055 - Evaluation of recipient performance.

Code of Federal Regulations, 2010 CFR

2010-07-01

... 40 Protection of Environment 1 2010-07-01 2010-07-01 false Evaluation of recipient performance. 35.9055 Section 35.9055 Protection of Environment ENVIRONMENTAL PROTECTION AGENCY GRANTS AND OTHER FEDERAL ASSISTANCE STATE AND LOCAL ASSISTANCE Financial Assistance for the National Estuary Program § 35.9055...

40 CFR 35.9015 - Summary of annual process.

Code of Federal Regulations, 2011 CFR

2011-07-01

... 40 Protection of Environment 1 2011-07-01 2011-07-01 false Summary of annual process. 35.9015 Section 35.9015 Protection of Environment ENVIRONMENTAL PROTECTION AGENCY GRANTS AND OTHER FEDERAL ASSISTANCE STATE AND LOCAL ASSISTANCE Financial Assistance for the National Estuary Program § 35.9015 Summary...

40 CFR 35.9055 - Evaluation of recipient performance.

Code of Federal Regulations, 2014 CFR

2014-07-01

... 40 Protection of Environment 1 2014-07-01 2014-07-01 false Evaluation of recipient performance. 35.9055 Section 35.9055 Protection of Environment ENVIRONMENTAL PROTECTION AGENCY GRANTS AND OTHER FEDERAL ASSISTANCE STATE AND LOCAL ASSISTANCE Financial Assistance for the National Estuary Program § 35.9055...

40 CFR 35.9015 - Summary of annual process.

Code of Federal Regulations, 2012 CFR

2012-07-01

... 40 Protection of Environment 1 2012-07-01 2012-07-01 false Summary of annual process. 35.9015 Section 35.9015 Protection of Environment ENVIRONMENTAL PROTECTION AGENCY GRANTS AND OTHER FEDERAL ASSISTANCE STATE AND LOCAL ASSISTANCE Financial Assistance for the National Estuary Program § 35.9015 Summary...

40 CFR 35.9055 - Evaluation of recipient performance.

Code of Federal Regulations, 2011 CFR

2011-07-01

... 40 Protection of Environment 1 2011-07-01 2011-07-01 false Evaluation of recipient performance. 35.9055 Section 35.9055 Protection of Environment ENVIRONMENTAL PROTECTION AGENCY GRANTS AND OTHER FEDERAL ASSISTANCE STATE AND LOCAL ASSISTANCE Financial Assistance for the National Estuary Program § 35.9055...

40 CFR 35.9015 - Summary of annual process.

Code of Federal Regulations, 2013 CFR

2013-07-01

... 40 Protection of Environment 1 2013-07-01 2013-07-01 false Summary of annual process. 35.9015 Section 35.9015 Protection of Environment ENVIRONMENTAL PROTECTION AGENCY GRANTS AND OTHER FEDERAL ASSISTANCE STATE AND LOCAL ASSISTANCE Financial Assistance for the National Estuary Program § 35.9015 Summary...

AN ASSESSMENT OF THE ECOLOGICAL CONDITION OF LONG ISLAND SOUND 1990-1993

EPA Science Inventory

Data from the Environmental Protection Agency's (EPA) Environmental Monitoring and Assessment Program (EMAP) from 1990 to 1993 were used to assess the condition of the Long Island Sound (LIS) estuary. Ambient water, sediment and biota were collected during the summer months from ...

ASSESSING THE CONDITION OF SOUTH CAROLINA'S ESTUARIES: A NEW APPROACH INVOLVING INTEGRATED MEASURES OF CONDITION

EPA Science Inventory

The South Carolina Estuarine and Coastal Assessment Program (SCECAP) was initiated in 1999 to assess the condition of the state's coastal habitats using multiple measures of water quality, sediment quality, and biological condition. Sampling has subsequently been expanded to incl...

INFLUENCE OF FRESHWATER INFLOW AND WATER MANAGEMENT ON OYSTER-REEF RESIDENT ORGANISMS: IMPLICATIONS FOR ECOSYSTEM RESTORATION.

EPA Science Inventory

Two sources of seasonal programming are at work in southwest Florida estuaries: variation in temperature and variation in rainfall and water release resulting in downstream variations in salinity. Since more significant correlations were detected between salinity and metrics than...

Incorporating Ecosystem Services into Community-level ...

EPA Pesticide Factsheets

EPA’s Office of Research and Development’s Sustainable and Healthy Communities Research Program is developing tools and approaches to incorporate ecosystem goods and services concepts into community-level decision-making. The San Juan Community Study is one of a series of coordinated community studies, which also include Mobile Bay, AL, Great Lakes Areas of Concern, and the Pacific Northwest. Common elements across the community studies include a focus on watershed management and national estuary programs (National Estuary Program, National Estuarine Research Reserve System). San Juan, Puerto Rico, is unique from the other community studies in that it is located in a highly urbanized watershed integrated with a number of freshwater and coastal ecosystems. The San Juan Community Study will explore linkages between watershed management decisions (e.g., dredging canals, restoration of mangrove buffers, sewage discharge interventions, climate adaptive strategies) targeting priority stressors (e.g., nutrients, contaminants, and pathogens; aquatic debris; habitat loss; modified hydrology and water circulation; sea level rise; storm intensity and frequency) effecting the condition of ecosystems (e.g., estuarine habitats and fish, as well as the connected terrestrial and coastal ecosystems), associated ecosystem goods and services (e.g., tourism and recreation, fishing, nutrient & sediment retention, contaminant processing, carbon sequestration, flood protection),

Monitoring the Restored Mangrove Condition at Perancak Estuary, Jembrana, Bali, Indonesia from 2001 to 2015

NASA Astrophysics Data System (ADS)

Ruslisan, R.; Kamal, M.; Sidik, F.

2018-02-01

Mangrove is unique vegetation that lives in tidal areas around the tropical and subtropical coasts. It has important physical, biological, and chemical roles for balancing the ecosystem, as well as serving as carbon pool. Therefore, monitoring the mangrove condition is very important step prior to any management and conservation actions in this area. This study aims to map and monitor the condition of restored mangroves in Perancak Estuary, Jembrana, Bali, Indonesia from 2001 to 2015. We used IKONOS-2, WorldView-2 and WorldView-3 image data to map the extent and canopy cover density of mangroves using visual delineation and semi-empirical modelling through Enhanced Vegetation Index (EVI) as a proxy. The results show that there was a significant increase in mangrove extent from 78.08 hectares in 2001 to 122.54 hectares in 2015. In term of mangrove canopy density, the percentage of high and very-high canopy density classes has increased from 32% in 2001 to 57% in 2015. On the other hand, there were slight changes in low and medium canopy density classes during the observation period. Overall, the result figures from both area extent and canopy density indicates the successful implementation of mangrove restoration effort in Perancak Estuary during the last 14 years.

Data access and decision tools for coastal water resources ...

EPA Pesticide Factsheets

US EPA has supported the development of numerous models and tools to support implementation of environmental regulations. However, transfer of knowledge and methods from detailed technical models to support practical problem solving by local communities and watershed or coastal management organizations remains a challenge. We have developed the Estuary Data Mapper (EDM) to facilitate data discovery, visualization and access to support environmental problem solving for coastal watersheds and estuaries. EDM is a stand-alone application based on open-source software which requires only internet access for operation. Initially, development of EDM focused on delivery of raw data streams from distributed web services, ranging from atmospheric deposition to hydrologic, tidal, and water quality time series, estuarine habitat characteristics, and remote sensing products. We have transitioned to include access to value-added products which provide end-users with results of future scenario analysis, facilitate extension of models across geographic regions, and/or promote model interoperability. Here we present three examples: 1) the delivery of input data for the development of seagrass models across estuaries, 2) scenarios illustrating the implications of riparian buffer management (loss or restoration) for stream thermal regimes and fish communities, and 3) access to hydrology model outputs to foster connections across models at different scales, ultimately feeding

The risk of harmful algal blooms (HABs) in the oyster-growing estuaries of New South Wales, Australia.

PubMed

Ajani, Penelope; Brett, Steve; Krogh, Martin; Scanes, Peter; Webster, Grant; Armand, Leanne

2013-06-01

The spatial and temporal variability of potentially harmful phytoplankton was examined in the oyster-growing estuaries of New South Wales. Forty-five taxa from 31 estuaries were identified from 2005 to 2009. Harmful species richness was latitudinally graded for rivers, with increasing number of taxa southward. There were significant differences (within an estuary) in harmful species abundance and richness for 11 of 21 estuaries tested. Where differences were observed, these were predominately due to species belonging to the Pseudo-nitzschia delicatissima group, Dinophysis acuminata, Dictyocha octonaria and Prorocentrum cordatum with a consistent upstream versus downstream pattern emerging. Temporal (seasonal or interannual) patterns in harmful phytoplankton within and among estuaries were highly variable. Examination of harmful phytoplankton in relation to recognised estuary disturbance measures revealed species abundance correlated to estuary modification levels and flushing time, with modified, slow flushing estuaries having higher abundance. Harmful species richness correlated with bioregion, estuary modification levels and estuary class, with southern, unmodified lakes demonstrating greater species density. Predicting how these risk taxa and risk zones may change with further estuary disturbance and projected climate warming will require more focused, smaller scale studies aimed at a deeper understanding of species-specific ecology and bloom mechanisms. Coupled with this consideration, there is an imperative for further taxonomic, ecological and toxicological investigations into poorly understood taxa (e.g. Pseudo-nitzschia).

Long-term Watershed Database for the Ridge and Valley Physiographic Province: Mahantango Creek Watershed, Pennsylvania, USA

USDA-ARS?s Scientific Manuscript database

Understanding agricultural effects on water quality in rivers and estuaries requires understanding of hydrometeorology and geochemical cycling at various scales over time. The USDA-ARS initiated a hydrologic research program at the Mahantango Creek Watershed (MCW) in 1968, a research watershed at t...

Pharmaceuticals in the environment--exposure, effects and risks to humans and ecosystems: what we think we know, and what we need to know

EPA Science Inventory

U.S., European and Korean environmental monitoring and research programs have confirmed the occurrence of low levels of pharmaceuticals in stream waters, in soils and streambed sediments, in ground water, in estuaries, and in drinking water.

Using National Coastal Assessment Data to Model Estuarine Water Quality at Large Spatial Scales.

EPA Science Inventory

The water quality of the Nation’s estuaries is attracting scrutiny in light of population growth and enhanced nutrient delivery. The USEPA has evaluated water quality in the National Coastal Assessment (NCA) and National Aquatic Resource Surveys (NARS) programs. Here we rep...

Seasonal and interannual patterns in primary production, respiration and net ecosystem metabolism in three estuaries in the northeast Gulf of Mexico

EPA Science Inventory

Measurements of primary production and respiration provide fundamental information about the trophic status of aquatic ecosystems, yet such measurements are logistically difficult and expensive to sustain as part of long-term monitoring programs. However, ecosystem metabolism par...

MICROORGANISM DIE-OFF RATES UNDER VARIOUS CONDITIONS

EPA Science Inventory

New York-New Jersey (NY-NJ) Harbor Estuary Program is charged to undertake an assessment of New York City Combined Sewer Overflow (NYC CSO) model for use in developing Total Maximum Daily Loads (TMDLs) which are scheduled for submission to EPA Region 2 by May 2006. A TMDL is def...

Science in Support of Management, Management in Support of Science - the Long Island Sound Experience

EPA Science Inventory

Since 1987 Long Island Sound (LIS) has been part of EPA’s National Estuary Program, and since 1994 it has been governed by a Comprehensive Conservation and Management Plan that provided for a strategic relationship between science and management. The Management Conference ...

SAN FRANCISCO BAY WETLANDS REGIONAL MONITORING PROGRAM

EPA Science Inventory

The geographic area to be monitored is the San Francisco Estuary and its watersheds from the Golden Gate to the Sacramento-San Joaquin Delta at Broad Slough. The initial focus will be the baylands of the region defined as the lands between the maximum and minimum elevations of t...

Patterns and sources of nitrogen and microbial contamination in a Pacific Northwest estuarine watershed

EPA Science Inventory

Tillamook Bay, a National Estuary Program site, is located on the northwest coast of Oregon. The Bay is one of Oregon’s leading producers of shellfish for human consumption. However, high levels of fecal indicator bacteria that exceed state water quality standards often r...

Status and Trends of Narragansett Bay and its Watershed: A Geographical Approach

EPA Science Inventory

The Narragansett Bay Estuary Program developed 24 environmental indicators for its 2017 State of the Bay and its Watershed report with the collaboration of over 50 bi-state and regional partners. A geographical approach was undertaken at different scales using an array of geospat...

40 CFR 35.9035 - Budget period.

Code of Federal Regulations, 2010 CFR

2010-07-01

... 40 Protection of Environment 1 2010-07-01 2010-07-01 false Budget period. 35.9035 Section 35.9035... ASSISTANCE Financial Assistance for the National Estuary Program § 35.9035 Budget period. An applicant may choose its budget period in consultation with and subject to the approval of the Regional Administrator. ...

Dredging Operations Technical Support Program. Colonial Waterbird Habitats and Nesting Populations in North Carolina Estuaries: 1983 Survey.

DTIC Science & Technology

1986-06-01

Verbena braziliensis 1 -- -- Part henocissus quinquefolia 1 3 4 Ptilimniwn capillacewn -- 6 -- Spartina cynosuroides -- 4 - Sonchus oleraceus -- 4...ty Zis castanea -- 2 -- Verbena spp. I- -- Calium hispiduiwn -- I -- Rubus flagilaris -- 1 2 Phytolacca canericana 1 4 Sonchus as per -- I -- Acer

HABITAT AND WATER QUALITY PROTECTION THROUGH GULLY RESTORATION MX974885

EPA Science Inventory

Weeks Bay is a sub-estuary of Mobile Bay, a Gulf of Mexico Program priority area. Fish River is the main tributary of Weeks Bay and in this watershed gullies have formed due to a combination of soil types, heavy rain events and agricultural practices. This project was completed...

Predicting fish community properties within estuaries: Influence of habitat type and other environmental features

NASA Astrophysics Data System (ADS)

França, Susana; Vasconcelos, Rita P.; Fonseca, Vanessa F.; Tanner, Susanne E.; Reis-Santos, Patrick; Costa, Maria José; Cabral, Henrique N.

2012-07-01

Statistical models predicting species distributions are essential not only to increase knowledge on species but for their application in conservation and ecologically-based management. The variation of fish species richness and abundance in the most representative habitats (saltmarsh, mudflat and subtidal) in five estuaries along the Portuguese coast was analysed through seasonal sampling surveys in 2009. Generalized additive models (GAM) were developed to describe the variation of species richness and abundances with a set of geomorphologic, hydrologic and environmental characteristics from the sampled estuaries and habitats. GAM were chosen as the complex interactions dominating these ecosystems and species distribution are non-linear. Final models built for each estuary and for all estuaries together performed well during the calibration phase and also during the validation phase, where an unused data sub-set from each estuary was used. There was not a similar combination of variables retained by the models for the studied estuaries but factors such as the area of the habitat, the distance to estuary mouth, percentage of mud in the sediment and depth were commonly retained. The partial effect of these predictor variables on the variation of species richness and abundance in the estuaries varied markedly and the importance of preserving the heterogeneity of habitats within estuaries was highlighted. Models for each individual estuary performed better than models for estuaries combined. Predictive models could be useful as a preliminary tool to prepare long-term conservation plans at different scales.

Chemical and physical characteristics of water in estuaries of Texas, October 1976-September 1978

USGS Publications Warehouse

Fisher, J.C.

1982-01-01

The coastal waters of Texas are not classical estuaries, but are similar to them in ecosystems and mixing phenomena. A description of various types of estuaries is presented in "Estuaries" edited by Lauff (1967, p. 3-11). The term estuary as used in this report, refers to concomitant water bodies in which streamflow mixes with seawater.

Use of the USEPA Estuary Nitrogen Model to Estimate Concentrations of Total Nitrogen in Estuaries Using Loads Calculated by Watershed Models and Monitoring Data

EPA Science Inventory

We use USEPA’s Estuary Nitrogen Model (ENM) to calculate annual average concentrations of total nitrogen (TN) in ten estuaries or sub-estuaries along the Atlantic coast from New Hampshire to Florida. These include a variety of systems, ranging from strongly-flushed bays to weakly...

Linking behavior, physiology, and survival of Atlantic Salmon smolts during estuary migration

USGS Publications Warehouse

Stich, Daniel S.; Zydlewski, Gayle B.; Kocik, John F.; Zydlewski, Joseph D.

2015-01-01

Decreased marine survival is identified as a component driver of continued declines of Atlantic Salmon Salmo salar. However, estimates of marine mortality often incorporate loss incurred during estuary migration that may be mechanistically distinct from factors affecting marine mortality. We examined movements and survival of 941 smolts (141 wild and 800 hatchery-reared fish) released in freshwater during passage through the Penobscot River estuary, Maine, from 2005 to 2013. We related trends in estuary arrival date, movement rate, and survival to fish characteristics, migratory history, and environmental conditions in the estuary. Fish that experienced the warmest thermal history arrived in the estuary 8 d earlier than those experiencing the coolest thermal history during development. Estuary arrival date was 10 d later for fish experiencing high flow than for fish experiencing low flow. Fish released furthest upstream arrived in the estuary 3 d later than those stocked further downstream but moved 0.5 km/h faster through the estuary. Temporally, movement rate and survival in the estuary both peaked in mid-May. Spatially, movement rate and survival both decreased from freshwater to the ocean. Wild smolts arrived in the estuary later than hatchery fish, but we observed no change in movement rate or survival attributable to rearing history. Fish with the highest gill Na+, K+-ATPase activity incurred 25% lower mortality through the estuary than fish with the lowest gill Na+, K+-ATPase activity. Smolt survival decreased (by up to 40%) with the increasing number of dams passed (ranging from two to nine) during freshwater migration. These results underscore the importance of physiological preparedness on performance and the delayed, indirect effects of dams on survival of Atlantic Salmon smolts during estuary migration, ultimately affecting marine survival estimates.

Subtidal sea level variability in a shallow Mississippi River deltaic estuary, Louisiana

USGS Publications Warehouse

Snedden, G.A.; Cable, J.E.; Wiseman, W.J.

2007-01-01

The relative roles of river, atmospheric, and tidal forcings on estuarine sea level variability are examined in Breton Sound, a shallow (0.7 m) deltaic estuary situated in an interdistributary basin on the Mississippi River deltaic plain. The deltaic landscape contains vegetated marshes, tidal flats, circuitous channels, and other features that frictionally dissipate waves propagating through the system. Direct forcing by local wind stress over the surface of the estuary is minimal, owing to the lack of significant fetch due to landscape features of the estuary. Atmospheric forcing occurs almost entirely through remote forcing, where alongshore winds facilitate estuary-shelf exchange through coastal Ekman convergence. The highly frictional nature of the deltaic landscape causes the estuary to act as a low-pass filter to remote atmospheric forcing, where high-frequency, coastally-induced fluctuations are significantly damped, and the damping increases with distance from the estuary mouth. During spring, when substantial quantities of controlled Mississippi River inputs (q?? = 62 m3 s-1) are discharged into the estuary, upper estuary subtidal sea levels are forced by a combination of river and remote atmospheric forcings, while river effects are less clear downestuary. During autumn (q?? = 7 m3 s-1) sea level variability throughout the estuary is governed entirely by coastal variations at the marine boundary. A frequency-dependent analytical model, previously used to describe sea level dynamics forced by local wind stress and coastal forcing in deeper, less frictional systems, is applied in the shallow Breton Sound estuary. In contrast to deeper systems where coastally-induced fluctuations exhibit little or no frictional attenuation inside the estuary, these fluctuations in the shallow Breton Sound estuary show strong frequency-dependent amplitude reductions that extend well into the subtidal frequency spectrum. ?? 2007 Estuarine Research Federation.

Daily variation in ingress of fall-spawned larval fishes into Delaware Bay in relation to alongshore and along-estuary wind components

NASA Astrophysics Data System (ADS)

Schieler, Brittany M.; Hale, Edward A.; Targett, Timothy E.

2014-12-01

Identifying factors that affect ingress of larval fishes from offshore spawning areas into estuarine nurseries is important to improve understanding of variability in recruitment of many coastal marine species. This study investigated the ingress of larval Atlantic croaker (Micropogonias undulatus), Atlantic menhaden (Brevoortia tyrannus), and summer flounder (Paralichthys dentatus) at Roosevelt Inlet, near the mouth of Delaware Bay, USA in relation to short-term wind events. Nightly abundances, from November 15 to December 15, 2010, were analyzed with alongshore and along-estuary wind components (direction and speed) using cross-correlation analysis to determine if winds affect larval ingress. Ingress of Atlantic croaker and summer flounder correlated with along-estuary winds, whereas Atlantic menhaden showed no significant correlations with either alongshore or along-estuary winds. Although along-estuary winds during this period were predominantly down-estuary, Atlantic croaker ingress was correlated with positive along-estuary winds (blowing up-estuary), with a three-day lag; and a particularly large ingress peak occurred following the largest up-estuary wind peak. Ingress of summer flounder was correlated with negative along-estuary winds (blowing down-estuary), with a two-day lag. These results suggest that species-specific vertical position in the water column influenced ingress into Delaware Bay. The lag results also suggest that ingressing Atlantic croaker and summer flounder may have a pooling stage outside the mouth of Delaware Bay.

Residual estuarine circulation in the Mandovi, a monsoonal estuary: A three-dimensional model study

NASA Astrophysics Data System (ADS)

Vijith, V.; Shetye, S. R.; Baetens, K.; Luyten, P.; Michael, G. S.

2016-05-01

Observations in the Mandovi estuary, located on the central west coast of India, have shown that the salinity field in this estuary is remarkably time-dependent and passes through all possible states of stratification (riverine, highly-stratified, partially-mixed and well-mixed) during a year as the runoff into the estuary varies from high values (∼1000 m3 s-1) in the wet season to negligible values (∼1 m3 s-1) at end of the dry season. The time-dependence is forced by the Indian Summer Monsoon (ISM) and hence the estuary is referred to as a monsoonal estuary. In this paper, we use a three-dimensional, open source, hydrodynamic, numerical model to reproduce the observed annual salinity field in the Mandovi. We then analyse the model results to define characteristics of residual estuarine circulation in the Mandovi. Our motivation to study this aspect of the Mandovi's dynamics is derived from the following three considerations. First, residual circulation is important to long-term evolution of an estuary; second, we need to understand how this circulation responds to strongly time-dependent runoff forcing experienced by a monsoonal estuary; and third, Mandovi is among the best studied estuaries that come under the influence of ISM, and has observations that can be used to validate the model. Our analysis shows that the residual estuarine circulation in the Mandovi shows four distinct phases during a year: a river like flow that is oriented downstream throughout the estuary; a salt-wedge type circulation, with flow into the estuary near the bottom and out of the estuary near the surface restricted close to the mouth of the estuary; circulation associated with a partially-mixed estuary; and, the circulation associated with a well-mixed estuary. Dimensional analysis of the field of residual circulation helped us to establish the link between strength of residual circulation at a location and magnitude of river runoff and rate of mixing at the location. We then derive an analytical expression that approximates exchange velocity (bottom velocity minus near freshwater velocity at a location) as a function of freshwater velocity and rate of mixing.

The divergent environmental characteristics of permanently-open, seasonally-open and normally-closed estuaries of south-western Australia

NASA Astrophysics Data System (ADS)

Chuwen, Benjamin M.; Hoeksema, Steeg D.; Potter, Ian C.

2009-10-01

This study has compared the environmental characteristics of the basins and saline lower reaches of the tributaries of eight estuaries on the south coast of Western Australia, which differ in their degree of connectivity with the ocean. Although four estuaries between 115.1° and 121.8° E along that coast remain permanently open to the ocean, the others only become open when the volume of river discharge is sufficient to breach the prominent sand bars at their mouths, which occurs annually following heavy winter and early spring rainfall in some estuaries (seasonally open) and infrequently in others (normally closed). Estuaries to the west of 118.5° E are predominantly permanently open, e.g. Oyster Harbour, or seasonally open, e.g. Broke, Irwin and Wilson inlets, whereas those further east, e.g. Wellstead Estuary and Hamersley, Culham and Stokes inlets, where annual rainfall and thus discharge are much lower, only become open after exceptionally heavy discharge. In permanently and seasonally-open estuaries, pronounced haloclines and oxyclines are present in the narrow rivers but not the wide basins where the waters are subjected to wind-driven mixing. The extent of cyclical seasonal fluctuations in environmental conditions differed markedly among the three seasonally-open estuaries and between years in one of those systems. These differences reflected variations in the relationship between the volume of fluvial discharge, which is determined by a combination of the amount of local rainfall, catchment size and extent of clearing of native vegetation, and the amount of intrusion by marine waters, which is largely controlled by the size and duration of the opening of the estuary mouth. The mean seasonal salinities in the basins of the three normally-closed estuaries increased over three years of very low rainfall to 64 in the deepest of these estuaries (Stokes Inlet) to 145 in Hamersley Inlet and to 296 in the shallowest estuary (Culham Inlet). These results demonstrate that the environmental characteristics of estuaries on the south coast of Western Australia differ markedly, even among those of the same type, e.g. seasonally-open estuaries or normally-closed estuaries.

Estuaries of the northeastern United States: Habitat and land use signatures

USGS Publications Warehouse

Roman, C.T.; Jaworski, N.; Short, F.T.; Findlay, S.; Warren, R.S.

2000-01-01

Geographic signatures are physical, chemical, biotic, and human-induced characteristics or processes that help define similar or unique features of estuaries along latitudinal or geographic gradients. Geomorphologically, estuaries of the northeastern U.S., from the Hudson River estuary and northward along the Gulf of Maine shoreline, are highly diverse because of a complex bedrock geology and glacial history. Back-barrier estuaries and lagoons occur within the northeast region, but the dominant type is the drowned-river valley, often with rocky shores. Tidal range and mean depth of northeast estuaries are generally greater when compared to estuaries of the more southern U.S. Atlantic coast and Gulf of Mexico. Because of small estuarine drainage basins, low riverine flows, a bedrock substrate, and dense forest cover, sediment loads in northeast estuaries are generally quite low and water clarity is high. Tidal marshes, seagrass meadows, intertidal mudflats, and rocky shores represent major habitat types that fringe northeast estuaries, supporting commercially-important fauna, forage nekton and benthos, and coastal bird communities, while also serving as links between deeper estuarine waters and habitats through detritus-based pathways. Regarding land use and water quality trends, portions of the northeast have a history of over a century of intense urbanization as reflected in increased total nitrogen and total phosphorus loadings to estuaries, with wastewater treatment facilities and atmospheric deposition being major sources. Agricultural inputs are relatively minor throughout the northeast, with relative importance increasing for coastal plain estuaries. Identifying geographic signatures provides an objective means for comparing the structure function, and processes of estuaries along latitudinal gradients.

Impacts of marine renewable energy scheme operation on the eutrophication potential of the Severn Estuary, UK

NASA Astrophysics Data System (ADS)

Kadiri, Margaret; Kay, David; Ahmadian, Reza; Bockelmann-Evans, Bettina; Falconer, Roger; Bray, Michaela

2013-04-01

In recent years there has being growing global interest in the generation of electricity from renewable resources. Amongst these, marine energy resource is now being considered to form a significant part of the energy mix, with plans for the implementation of several marine renewable energy schemes such as barrages and tidal stream turbines around the UK in the near future. Although marine energy presents a great potential for future electricity generation, there are major concerns over its potential impacts, particularly barrages, on the hydro-environment. Previous studies have shown that a barrage could significantly alter the hydrodynamic regime and tidal flow characteristics of an estuary, with changes to sediment transport (Kadiri et al., 2012). However, changes to nutrients have been overlooked to date. Hence, considerable uncertainty remains as to how a barrage would affect the trophic status of an estuary. This is particularly important because eutrophication can lead to algal toxin production and increased mortality of aquatic invertebrates and fish populations. Therefore, this study examines the impacts of the two different modes of operation of a barrage (i.e. ebb generation and flood-ebb generation) on the eutrophication potential of the Severn Estuary using a simplified model developed by the UK's Comprehensive Studies Task Team (CSTT). The model uses a set of equations and site-specific input data to predict equilibrium dissolved nutrient concentrations, phytoplankton biomass, light-controlled phytoplankton growth rate and primary production which are compared against CSTT set standards for assessing the eutrophic status of estuaries and coastal waters. The estuary volume and tidal flushing time under the two operating modes were estimated using a hydrodynamic model and field surveys were conducted to obtain dissolved nitrate and phosphate concentrations which served as input data. The predicted equilibrium dissolved nitrate and phosphate concentrations were slightly greater under ebb generation compared to flood-ebb generation. However, the concentrations did not exceed the CSTT standard indicating that hypernutrification is not likely to occur. Similarly, the predicted phytoplankton biomass and light-controlled growth rate under both ebb and flood-ebb generation were less than the CSTT standards suggesting no likelihood of eutrophication. The predicted phytoplankton production, however, was significantly greater under ebb generation compared to flood-ebb generation due to restricted tidal flushing decreasing nutrient dispersion and increasing the residence time of nutrient in the region upstream of the barrage. This study also examines the wider positive ecological implications of these findings for the Severn Estuary. Reference Kadiri, M., Ahmadian, R., Bockelmann-Evans, B., Rauen, W., and Falconer, R., 2012. A review of the potential water quality impacts of tidal renewable energy systems. Renewable and Sustainable Energy Reviews, 16: 329- 341.

Catchment land use predicts benthic vegetation in small estuaries

PubMed Central

Warry, Fiona Y.; Reich, Paul; Mac Nally, Ralph; Woodland, Ryan J.

2018-01-01

Many estuaries are becoming increasingly eutrophic from human activities within their catchments. Nutrient loads often are used to assess risk of eutrophication to estuaries, but such data are expensive and time consuming to obtain. We compared the percent of fertilized land within a catchment, dissolved inorganic nitrogen loads, catchment to estuary area ratio and flushing time as predictors of the proportion of macroalgae to total vegetation within 14 estuaries in south-eastern Australia. The percent of fertilized land within the catchment was the best predictor of the proportion of macroalgae within the estuaries studied. There was a transition to a dominance of macroalgae once the proportion of fertilized land in the catchment exceeded 24%, highlighting the sensitivity of estuaries to catchment land use. PMID:29473004

DOE Office of Scientific and Technical Information (OSTI.GOV)

Diefenderfer, Heida L.; Johnson, Gary E.; Sather, Nichole K.

This report describes the 2009 research conducted under the U.S. Army Corps of Engineers (USACE or Corps) project EST-09-P-01, titled “Evaluation of Life History Diversity, Habitat Connectivity, and Survival Benefits Associated with Habitat Restoration Actions in the Lower Columbia River and Estuary.” The research was conducted by the Pacific Northwest National Laboratory, Marine Science Laboratory and Hydrology Group, in partnership with the University of Washington, School of Aquatic and Fishery Sciences, Columbia Basin Research, and Earl Dawley (NOAA Fisheries, retired). This Columbia River Fish Mitigation Program project, referred to as “Salmonid Benefits,” was started in FY 2009 to evaluate themore » state-of-the science regarding the ability to quantify the benefits to listed salmonids1 of habitat restoration actions in the lower Columbia River and estuary.« less

Measurement of Nitroaromatic Explosives by Micellar Electrokinetic Chromatography in Waters Collected Along a Tropical Estuary

DTIC Science & Technology

2014-02-07

Naval Research Laboratory Washington, DC 20375-5320 NRL/MR/ 6110 --14-9504 Measurement of Nitroaromatic Explosives by Micellar Electrokinetic...Carolina CaMeron lindsay Science & Engineering Apprenticeship Program Office of Naval Research Arlington, Virginia i REPORT DOCUMENTATION PAGE Form...GRANT NUMBER 5c. PROGRAM ELEMENT NUMBER 5d. PROJECT NUMBER 5e. TASK NUMBER 5f. WORK UNIT NUMBER 2 . REPORT TYPE1. REPORT DATE (DD-MM-YYYY) 4. TITLE

Comparison of Nutrient Drivers and Response Metrics in Oregon Estuaries

EPA Science Inventory

With the goal of assessing sensitivity to nutrient enrichment, we present a cross-estuary comparison of nutrient sources, levels, and biological responses (phytoplankton and macroalgae) for thirteen Oregon estuaries. Nitrogen levels in the upstream portions of the estuaries are ...

MAPPING BATHYMETRY AND BOTTOM TYPE IN A SHALLOW ESTUARY

EPA Science Inventory

Bathymetry and bottom type are important in characterizing estuaries and their ecology but hard to map, especially in shallow estuaries. Acoustic backscattering was used to remotely sense these properties in the shallow Slocums River Estuary of Massachusetts. Acoustic pulses were...

KNOW YOUR ESTUARY: THE WATER THROUGH TIME

EPA Science Inventory

This presentation will focus on historical changes in water quality in the Yaquina Estuary, Oregon, and factors which influence water quality within this estuary. Topics presented will include the importance of ocean conditions on water quality in the estuary; historical changes...

Flux of Total Mercury and Methylmercury to the Northern Gulf of Mexico from U.S. Estuaries.

PubMed

Buck, Clifton S; Hammerschmidt, Chad R; Bowman, Katlin L; Gill, Gary A; Landing, William M

2015-12-15

To better understand the source of elevated methylmercury (MeHg) concentrations in Gulf of Mexico (GOM) fish, we quantified fluxes of total Hg and MeHg from 11 rivers in the southeastern United States, including the 10 largest rivers discharging to the GOM. Filtered water and suspended particles were collected across estuarine salinity gradients in Spring and Fall 2012 to estimate fluxes from rivers to estuaries and from estuaries to coastal waters. Fluxes of total Hg and MeHg from rivers to estuaries varied as much as 100-fold among rivers. The Mississippi River accounted for 59% of the total Hg flux and 49% of the fluvial MeHg flux into GOM estuaries. While some estuaries were sources of Hg, the combined estimated fluxes of total Hg (~5200 mol y(-1)) and MeHg (~120 mol y(-1)) from the estuaries to the GOM were less than those from rivers to estuaries, suggesting an overall estuarine sink. Fluxes of total Hg from the estuaries to coastal waters of the northern GOM are approximately an order of magnitude less than from atmospheric deposition. However, fluxes from rivers are significant sources of MeHg to estuaries and coastal regions of the northern GOM.

Estuarine water quality in parks of the Northeast Coastal and Barrier Network: vital signs estuarine nutrient-enrichment monitoring, 2006-11

USGS Publications Warehouse

Caldwell, James M.; Nixon, Matthew E.; Neckles, Hilary A.; Pooler, Penelope S.

2015-01-01

This report summarizes results of water-quality monitoring within estuaries of the National Park Service Northeast Coastal and Barrier Network (NCBN) from 2006 through 2011. Data collection formed part of the NCBN Vital Signs Monitoring Program implemented to detect threats of estuarine nutrient enrichment. Data included here were collected from six parks at predetermined intervals: Cape Cod National Seashore, Massachusetts (2007, 2008, 2009, 2010, 2011); Fire Island National Seashore, New York (2009, 2011); Gateway National Recreation Area, New York and New Jersey (2010); Assateague Island National Seashore, Maryland and Virginia (2006, 2008, 2010); George Washington Birthplace National Monument, Virginia (2009, 2011); and Colonial National Historic Park, Virginia (2008, 2010). Monitoring variables consisted of dissolved-oxygen concentration, chlorophyll a concentration, attenuation of downwelling photosynthetically available radiation (PAR), turbidity, water temperature, and salinity. All monitoring was conducted during four-week summer index periods. The monitoring design incorporated data collection at multiple, complementary spatial and temporal scales. Within each park, a spatial survey was conducted once during the index period following a probability design using a grid of tessellated hexagons as the basis for sample site selection. The spatial survey was supplemented with weekly measurements at a subset of sites and continuous monitoring at a single reference site. Within parks, data were reported as area-weighted water-quality conditions during each index period, the location and extent of estuarine area within condition categories, and spatial and temporal trends. In addition, we used a repeated measures analysis of variance to determine the extent to which variability in three water quality metrics (chlorophyll a in surface water, dissolved oxygen in bottom water, and water clarity expressed by PAR attenuation) was explained by year to year changes in each park's respective estuary. 

EPA'S COASTAL 2000 MONITORING PROGRAM IN THE NORTHEAST U.S.: CONSISTENCY IN METHODS AND QUALITY ASSURANCE

EPA Science Inventory

As part of EPA's national Coastal 2000 effort to estimate the ecological condition of our Nation's estuarine resources, sampling of the estuaries of the northeast United States (Delaware to Maine) began in the summer of 2000. Samples and data were collected to determine water qua...

Novel effects-based monitoring approaches to evaluate chemicals of emerging concern in the St. Louis River estuary

EPA Science Inventory

As part of an on-going program of research in support of the Great Lakes Restoration Initiative, the US EPA MED laboratory has been developing effects-based biomonitoring tools to evaluate the occurrence and potential hazards associated with Chemicals of Emerging Concern (CECs). ...

IDENTIFICATION OF SPECIES-ENVIRONMENT RELATIONSHIPS IN THE HUDSON-RARITAN ESTUARY AND RELATED SUB-BASINS

EPA Science Inventory

The US EP A's Regional Environmental Monitoring and Assessment Program (REMAP) conducted a study in 1993/94 to assess the effects of sediment contamination in the Hudson- Raritan area (Upper New York, Raritan Bay, Jamaica Bay, western Long Island Sound and the Bight Apex). This s...

ENVIRONMENTAL MONITORING AND ASSESSMENT PROGRAM (EMAP): NATIONAL COASTAL ASSESSMENT, GULF OF MEXICO, AND INDICATOR DEVELOPMENT

EPA Science Inventory

The estuaries and coastal waters of the U.S. represent a complex set of ecosystems along the coasts of the Atlantic Ocean, Gulf of Mexico and Pacific Ocean. These ecosystems are affected by effluents and nutrients entering the coastal waters, as well as global stressors and anthr...

Red Alder (Alnus rubra) Distribution Influences Nitrate Discharge to Coastal Estuaries: Comparison of Two Oregon Watersheds

EPA Science Inventory

We determined nutrient export from the Yaquina and Alsea Rivers as part of a larger program for evaluating nutrient sources to coastal waters. The Yaquina and Alsea data indicated that one river typically contained twice the amount of dissolved nitrate-N, although temperature, co...

A PROBABILISTIC ASSESSMENT OF BENTHIC CONDITION OF WEST COAST ESTUARIES: RESULTS FROM THE NATIONAL COASTAL ASSESSMENT 1999-2000

EPA Science Inventory

As part of the National Coastal Assessment, the Environmental Monitoring and Assessment Program of EPA is conducting a six year evaluation of benthic habitat condition for coastal waters of the western U.S. In 1999, probabilistic sampling for a range of biotic and abiotic conditi...

2017 STATE OF NARRAGANSETT BAY AND ITS WATERSHED – MAPPING DRIVERS OF CHANGE AND VARIATION

EPA Science Inventory

The Narragansett Bay Estuary Program (NBEP) developed 24 environmental indicators for its 2017 State of Narragansett Bay and Its Watershed report with the collaboration of over 50 bi-state (MA and RI) and regional partners. The report presents and tracks the 24 indicators in ord...

76 FR 55673 - Vulnerability Assessments in Support of the Climate Ready Estuaries Program: A Novel Approach...

Federal Register 2010, 2011, 2012, 2013, 2014

2011-09-08

... exercise was designed to elicit judgments from experts in a workshop setting, regarding climate change... influence under both current and future climate change scenarios. The experts also discussed the high impact... in the diagram, and the potential for threshold changes. These reports show how climate-sensitive...

75 FR 2517 - Notice of Solicitation for Estuary Habitat Restoration Program

Federal Register 2010, 2011, 2012, 2013, 2014

2010-01-15

... related to climate change on the viability of the proposed restoration. This may take the form of considering climate change in the planning, design, siting, and construction of the project, or in testing new restoration technologies that may help to alleviate effects of climate change. This document describes project...

Assessing Nation-wide Distributions of Contaminant Levels in Selected Finfish and Shellfish from the Estuaries of the United States

EPA Science Inventory

The toxicity of mercury is well documented and has led to laws and regulations governing its use and disposal; however mercury contamination of coastal and estuarine biota continues to be of public concern. The U.S. EPA Environmental Monitoring and Assessment Program provided da...

A MORE COST-EFFECTIVE EMAP-W BENTHIC MACROFAUNAL SAMPLE UNIT

EPA Science Inventory

The standard EPA West Coast Environmental Monitoring and Assessment Program (EMAP-W) benthic macrofaunal sampling protocol is to collect 30-50 random benthic samples per reporting unit (e.g., estuary, region) using a 0.1 m2 grab and to sort out macrofauna using a 1.0 mm mesh scre...

Coastal Inlets Research Program

DTIC Science & Technology

2015-02-09

maintenance dredging of 216 million cubic yards from Federal navigation channels. Dredging costs are likely to increase in the future because of...beaches, estuaries, ecosystems and regions. Demand for regional sediment management practices and mitigation for engineering activities includes...innovative creation of nearshore berms with dredged sediment intended as a source to nourish neighboring beaches. Renewable, cost- effective placement

Tidal Mixing Box Submodel for Tampa Bay: Calibration of Tidal Exchange Flows with the Parameter Estimation Tool (PEST)

EPA Science Inventory

In the mid-1990s the Tampa Bay Estuary Program proposed a nutrient reduction strategy focused on improving water clarity to promote seagrass expansion within Tampa Bay. A System Dynamics Model is being developed to evaluate spatially and temporally explicit impacts of nutrient r...

A marine environmental monitoring and assessment program

NASA Technical Reports Server (NTRS)

Pearce, J. B.

1981-01-01

The need for the use of modern, extremely sensitive techniques to aid in rapidly and synoptically assessing the relative health and production of coastal waters and estuaries is reported. Major emphasis is placed on establishing a solid foundation for the use of remote sensing in basic oceanographic studies and the management of human wastes.

Effects of environmental and water quality parameters on the functioning of copepod assemblages in tropical estuaries

NASA Astrophysics Data System (ADS)

Araujo, Adriana V.; Dias, Cristina O.; Bonecker, Sérgio L. C.

2017-07-01

We examined changes in the functioning of copepod assemblages with increasing pollution in estuaries, using sampling standardization of the salinity range to enable comparisons. Copepod assemblages were analyzed in four southeast Brazilian estuaries with different water quality levels and hydrodynamic characteristics over two years. We obtained mesozooplankton samples together with environmental and water quality parameters in the estuaries, every two months under predetermined salinities ranging from 15 to 25. The values of parameters, except species size, associated with the functioning of the copepod assemblages (biomass, productivity, and turnover rate) did not differ among estuaries. However, in the more polluted estuaries, the biomass and productivity of copepod assemblages of mesozooplankton were negatively correlated with concentration of pollution indicator parameters. Conversely, in the less polluted estuaries some degree of enrichment still seems to increase the system biomass and productivity, as these parameters were inversely related to indicators of improved water quality. The pollution level of estuaries distorted the relationship between temperature and the efficiency of converting energy to organic matter. In the less polluted estuaries, the relationship between turnover rate and temperature was over 70%, while in the most polluted estuaries, this relationship was only approximately 50%. Our results demonstrated that the functioning of assemblages in the estuaries was affected differently by increasing pollution depending on the water quality level of the system. Thus, investigating the functioning of assemblages can be a useful tool for the analysis of estuarine conditions.

Seasonal and interannual variability of mesozooplankton in two contrasting estuaries of the Bay of Biscay: Relationship to environmental factors

NASA Astrophysics Data System (ADS)

Villate, Fernando; Iriarte, Arantza; Uriarte, Ibon; Sanchez, Iraide

2017-12-01

Seasonal and interannual variations of total mesozooplankton abundance and community variability were assessed for the period 1998-2005 at 3 salinity sites (35, 33 and 30) of the estuaries of Bilbao and Urdaibai (southeast Bay of Biscay). Spatial differences in mesozooplankton seasonality were recognized, both within and between estuaries, related to differences between sites in hydrodynamic features and anthropogenic nutrient enrichment that drive phytoplankton biomass seasonal cycles. The within estuary seasonal differences in mesozooplankton community were mainly shown through seaward time-advances in the seasonal peak from summer to spring along the salinity gradient, linked to differences in phytoplankton availability during the summer, in turn, related to nutrient availability. These differences were most marked in the estuary of Urdaibai, where zooplankton seasonal pattern at 35 salinity (high tidal flushing) resembled that of shelf waters, while at 35 of the estuary of Bilbao zooplankton showed an estuarine seasonal pattern due to the influence of the estuarine plume. Cirripede larvae contributed most to the mesozooplankton seasonal variability, except at the outer estuary of Bilbao, where cladocerans and fish eggs and larvae were the major contributors, and the inner estuary of Urdaibai, where gastropod larvae contributed most. Total mesozooplankton increased at 30 salinity of the estuary of Bilbao and 35 salinity of the estuary of Urdaibai. Interannual variability of mesozooplankton at the lowest salinity of the estuary of Bilbao was mainly accounted for by copepods due to the introduction of non-indigenous species during estuarine rehabilitation from intense pollution. However, bivalve larvae and gastropod larvae showed the highest contributions at 35 salinity of the estuary of Urdaibai. At the rest of sites, the opposite interannual trends of polychaete larvae and hydromedusae generally made the highest contribution.

Carbon dioxide emissions from Indian monsoonal estuaries

NASA Astrophysics Data System (ADS)

Sarma Vedula, VSS

2012-07-01

The oceans act as a net sink for atmospheric CO2, however, the role of coastal bodies on global CO2 fluxes remains unclear due to lack of data. The estimated absorption of CO2 from the continental shelves, with limited data, is 0.22 to 1.0 PgC/y, and of CO2 emission by estuaries to the atmosphere is 0.27 PgC/y. The estimates from the estuaries suffer from large uncertainties due to large variability and lack of systematic data collection. It is especially true for Southeast Asian estuaries as the biogeochemical cycling of material are different due to high atmospheric temperature, seasonality driven by monsoons, seasonal discharge etc. In order to quantify CO2 emissions from the Indian estuaries, samples were collected at 27 estuaries all along the Indian coast during discharge wet and dry periods. The emissions of CO2 to the atmosphere from Indian estuaries were 4-5 times higher during wet than dry period. The pCO2 ranged between ~300 and 18492 microatm which were within the range of world estuaries. The mean pCO2 and particulate organic carbon (POC) showed positive relation with rate of discharge suggesting availability of high quantities of organic matter that led to enhanced microbial decomposition. The annual CO2 fluxes from the Indian estuaries, together with dry period data available in the literature, amounts to 1.92 TgC which is >10 times less than that from the European estuaries. The low CO2 fluxes from the Indian estuaries are attributed to low flushing rates and less human settlements along the banks of the Indian estuaries.

Heavy Metals (Cd, Cu, Cr, Pb and Zn) in Meretrix meretrix Roding, Water and Sediments from Estuaries in Sabah, North Borneo

ERIC Educational Resources Information Center

Abdullah, Mohd. Harun; Sidi, Jovita; Aris, Ahmad Zaharin

2007-01-01

Concentrations of heavy metals (Cd, Cu, Cr, Pb and Zn) in tissues of Meretrix meretrix Roding (M. meretrix R.), water and sediments from two estuaries were determined. One estuary is located in an urban area of Kota Kinabalu (Likas estuary) and the other in a rural district of Kota Belud (Kota Belud estuary), where both are in Sabah, North of…

Florida's salt-marsh management issues: 1991-98.

PubMed

Carlson, D B; O'Bryan, P D; Rey, J R

1999-06-01

During the 1990s, Florida has continued to make important strides in managing salt marshes for both mosquito control and natural resource enhancement. The political mechanism for this progress continues to be interagency cooperation through the Florida Coordinating Council on Mosquito Control and its Subcommittee on Managed Marshes (SOMM). Continuing management experience and research has helped refine the most environmentally acceptable source reduction methods, which typically are Rotational Impoundment Management or Open Marsh Water Management. The development of regional marsh management plans for salt marshes within the Indian River Lagoon by the SOMM has helped direct the implementation of the best management practices for these marshes. Controversy occasionally occurs concerning what management technique is most appropriate for individual marshes. The most common disagreement is over the benefits of maintaining an impoundment in an "open" vs. "closed" condition, with the "closed" condition, allowing for summer mosquito control flooding or winter waterfowl management. New federal initiatives influencing salt-marsh management have included the Indian River Lagoon-National Estuary Program and the Pesticide Environmental Stewardship Program. A new Florida initiative is the Florida Department of Environmental Protection's Eco-system Management Program with continuing involvement by the Surface Water Improvement and Management program. A developing mitigation banking program has the potential to benefit marsh management but mosquito control interests may suffer if not handled properly. Larvicides remain as an important salt-marsh integrated pest management tool with the greatest acreage being treated with temephos, followed by Bacillus thuringiensis israelensis and methoprene. However, over the past 14 years, use of biorational larvicides has increased greatly.

Flushing Time

EPA Science Inventory

The flushing time of an estuary is generally defined as the turnover time of fresh water in the estuary, that is, the time required to replace the fresh water contained in the estuary with freshwater inflow. Thus, the flushing time of an estuary is the ratio of the volume of fres...

78 FR 9887 - Proposed Information Collection; Comment Request; National Estuaries Restoration Inventory

Federal Register 2010, 2011, 2012, 2013, 2014

2013-02-12

... Collection; Comment Request; National Estuaries Restoration Inventory AGENCY: National Oceanic and... for a revision and extension of a currently approved information collection. Collection of estuary... information) will be undertaken in order to populate a restoration project database mandated by the Estuary...

An historical perspective on eutrophication in the Pensacola Bay Estuary, FL, USA

EPA Science Inventory

In this chapter, we provide a brief description of the Pensacola Bay estuary, examining the available historical data for evidence of trends in eutrophication within the estuary. Common to many industrialized estuaries, Pensacola Bay has been subjected to unregulated point source...

Differences in the structure of copepod assemblages in four tropical estuaries: Importance of pollution and the estuary hydrodynamics.

PubMed

Araujo, Adriana V; Dias, Cristina O; Bonecker, Sérgio L C

2017-02-15

We examined the relationship between pollution and structure of copepod assemblages in estuaries, using sampling standardization of salinity range to reduce the effects of "Estuarine Quality Paradox". Copepod assemblages were analyzed in four Southeast Brazilian estuaries with different water quality levels and different hydrodynamic characteristics. The pollution negatively impacted the descriptors of the assemblage structure. The distribution of structure of copepod assemblages also showed a main separation trend between the most polluted estuaries and those less polluted. Temperature was the main factor affecting the assemblage structuring in the four estuaries. This factor acted in synergism with the effects of pollution impact and physical characteristics of the estuaries on the structure of copepod assemblages, supporting the potential vulnerability of coastal environments due to nutrient enrichment associated with climate change. Our study demonstrated the importance of sampling standardization of the salinity range in estuaries for reliable analysis of pollution effects on biota. Copyright © 2016 Elsevier Ltd. All rights reserved.

Comparison of common persistent organic pollutants (POPs) in flounder (Platichthys flesus) from the Vistula (Poland) and Douro (Portugal) River estuaries.

PubMed

Waszak, Ilona; Dabrowska, Henryka; Komar-Szymczak, Katarzyna

2014-04-15

Groups of flounder (Platichthys flesus) females were collected in 2011 from the Vistula River and the Duoro River estuaries and corresponding reference sites in the southern Baltic Sea and Portuguese coast of the Atlantic Ocean to measure and compare the levels and profiles of polychlorinated biphenyls (PCBs), organochlorine pesticides (OCPs), and polybrominated diphenyl ethers (PBDEs). The estuaries' sediments were also investigated. Several differences were found in the POPs between the estuaries and between the two marine regions, which were highlighted by PCA. The Vistula River estuary POPs, significantly higher than in the Douro River estuary, were dominated by DDTs followed by PCBs. PBDEs levels, indifferent between the estuaries, were relatively low. The POP levels in flounder and sediment evaluated against environmental assessment criteria (EACs) indicated that none of the measured contaminants for which EAC had been established exceeded the criterion, except for CB-118 in flounder from the Vistula River estuary. Copyright © 2014 Elsevier Ltd. All rights reserved.

CISDE Experiment: Nearshore-Estuarine Connectivity & Dispersion

NASA Astrophysics Data System (ADS)

Giddings, S. N.; Feddersen, F.; Harvey, M.; Gilroy, A. R.; Crooks, J.; McCullough, J.; Lorda, J.; Grimes, D. J.; Pawlak, G. R.

2016-02-01

As part of the CSIDE, Cross Surfzone/Inner-shelf Dye Exchange experiment, nearby shallow estuary measurements were made in addition to the surfzone and inner-shelf measurements, providing an integrated view into the estuary, surfzone, and shelf system. The CSIDE experiment was designed to look at the dispersion of dye as a proxy for dispersion of waterborne constituents such as pollutants, larvae, sediment, etc. along the coast and across the surfzone to a stratified inner-shelf. The Tijuana River Estuary, a shallow estuary with extensive intertidal regions and marsh, is sometimes the source of harmful contaminants that lead to beach closures in the CSIDE experiment region. However, at other times, the estuary may also act as a sink depending upon the freshwater conditions upstream. During this experiment, we installed temperature and salinity sensors, velocimeters, and fluorometers (measuring both turbidity and the dye concentration) in the two main arms of the Tijuana River Estuary to assess the connectivity between the surfzone and the estuary as well as the in-estuary dispersion.

Hydro-sedimentary processes of a shallow tropical estuary under Amazon influence. The Mahury Estuary, French Guiana

NASA Astrophysics Data System (ADS)

Orseau, Sylvain; Lesourd, Sandric; Huybrechts, Nicolas; Gardel, Antoine

2017-04-01

Along the Guianas coast, coastal dynamic is characterized by the migration of mud banks originating from the Amazon. This singular feature affects the dynamic and the morphology of local estuaries and can induce rapid bathymetric evolution in lower estuaries. Since 2012, the navigation channel of the Mahury Estuary (French Guiana) is enduring a severe siltation whose origin comes from a mud bank crossing the estuary mouth. This study aims to determine how the migration of a mud bank through an estuary mouth could influence the transport and fluxes in the estuary. Field measurements were performed over a year with the monitoring of the salt intrusion length, mooring surveys during spring-neap cycles and shipboard profiling surveys during semi-diurnal cycles. Salt intrusion lengths underline a significant seasonal variation characterized by the transition from a steady-state length during high river discharge and a wide range of lengths with the tidal range during low to moderate river discharge. During the rainy season, measurements indicate a fluvial-dominated condition with low suspended-sediment concentrations most of the semi-diurnal cycle. Residual sediment fluxes are usually seaward excepted when river discharge is below seasonal average. During the dry season, maximum suspended-sediment concentrations are higher in the middle part of the estuary. Residual sediment fluxes are landward along the estuary and stronger during neap tides in the estuary mouth and few kilometers upstream. In this area, a persistent density stratification traps sediments in the bottom layer and generates a gravitational circulation during neap tides, which enhances landward transports up to 2.56 t m-1 over a semi-diurnal cycle. In the middle estuary, landward fluxes are most significant during the dry season and also during the rainy season when the river discharge is below the seasonal average. Although this study includes temporal and spatial limitations, it underlines significant mud inflows in the middle part of the estuary during low to moderate river discharges. Comparison with old data suggests higher sediment loads in the estuary during the migration of a mud bank but must be confirmed by further studies during the interbank period.

Short-term to seasonal variability in factors driving primary productivity in a shallow estuary: Implications for modeling production

NASA Astrophysics Data System (ADS)

Canion, Andy; MacIntyre, Hugh L.; Phipps, Scott

2013-10-01

The inputs of primary productivity models may be highly variable on short timescales (hourly to daily) in turbid estuaries, but modeling of productivity in these environments is often implemented with data collected over longer timescales. Daily, seasonal, and spatial variability in primary productivity model parameters: chlorophyll a concentration (Chla), the downwelling light attenuation coefficient (kd), and photosynthesis-irradiance response parameters (Pmchl, αChl) were characterized in Weeks Bay, a nitrogen-impacted shallow estuary in the northern Gulf of Mexico. Variability in primary productivity model parameters in response to environmental forcing, nutrients, and microalgal taxonomic marker pigments were analysed in monthly and short-term datasets. Microalgal biomass (as Chla) was strongly related to total phosphorus concentration on seasonal scales. Hourly data support wind-driven resuspension as a major source of short-term variability in Chla and light attenuation (kd). The empirical relationship between areal primary productivity and a combined variable of biomass and light attenuation showed that variability in the photosynthesis-irradiance response contributed little to the overall variability in primary productivity, and Chla alone could account for 53-86% of the variability in primary productivity. Efforts to model productivity in similar shallow systems with highly variable microalgal biomass may benefit the most by investing resources in improving spatial and temporal resolution of chlorophyll a measurements before increasing the complexity of models used in productivity modeling.

The relationship between CDOM and salinity in estuaries: An analytical and graphical solution

NASA Astrophysics Data System (ADS)

Bowers, D. G.; Brett, H. L.

2008-09-01

The relationship between coloured dissolved organic matter (CDOM) and salinity in an estuary is explored using a simple box model in which the river discharge and concentration of CDOM in the river are allowed to vary with time. The results are presented as analytical and graphical solutions. The behaviour of the estuary depends upon the ratio, β, of the flushing time of the estuary to the timescale of the source variation. For small values of β, the variation in CDOM concentration in the estuary tracks that in the source, producing a linear relationship on a CDOM-salinity plot. As β increases, the estuary struggles to keep up with the changes in the source; and a curved CDOM-salinity plot results. For very large values of β, however, corresponding to estuaries with a long flushing time, the CDOM concentration in the estuary settles down to a mean value which again lies on a straight line on a CDOM-salinity plot (and extrapolates to the time-mean concentration in the source). The results are discussed in terms of the mapping of surface salinity in estuaries through the visible band remote sensing of CDOM.

Comparative study of trophic organization of juvenile fish assemblages of three tidal creeks in a tropical semi-arid estuary.

PubMed

Figueiredo, G G A A; Pessanha, A L M

2016-07-01

A comparison of three tidal creeks assessed the effects of the hydrological regime on trophic organization in juvenile fish assemblages of 21 species in a tropical estuary in north-eastern Brazil. There were seven trophic guilds represented spatially. Zooplanktivore and zoobenthivore guilds dominated the lower estuary, whereas omnivores and detritivores dominated the upper estuary. In the rainy season, the zooplanktivore and omnivore guilds were more common throughout the estuary, but in the dry season, zoobenthivores and piscivores occurred throughout. The trophic organization results show that (1) there was a higher complexity in tidal creeks in the upper estuary compared with the first tidal creek in the lower region and (2) trophic linkages increased in the upper estuary, principally the number of omnivore and detritivore species. Spatial variation in trophic structure was primarily associated with differences in the location of the tidal creeks along the estuary, and this variability was partly attributed to fish species richness; the number of species increased towards the upper estuary, and additional species occupied different trophic levels or used additional resources. © 2015 The Fisheries Society of the British Isles.

Conditions for tidal bore formation in convergent alluvial estuaries

NASA Astrophysics Data System (ADS)

Bonneton, Philippe; Filippini, Andrea Gilberto; Arpaia, Luca; Bonneton, Natalie; Ricchiuto, Mario

2016-04-01

Over the last decade there has been an increasing interest in tidal bore dynamics. However most studies have been focused on small-scale bore processes. The present paper describes the first quantitative study, at the estuary scale, of the conditions for tidal bore formation in convergent alluvial estuaries. When freshwater discharge and large-scale spatial variations of the estuary water depth can be neglected, tide propagation in such estuaries is controlled by three main dimensionless parameters: the nonlinearity parameter ε0 , the convergence ratio δ0 and the friction parameter ϕ0. In this paper we explore this dimensionless parameter space, in terms of tidal bore occurrence, from a database of 21 estuaries (8 tidal-bore estuaries and 13 non tidal-bore estuaries). The field data point out that tidal bores occur for convergence ratios close to the critical convergence δc. A new proposed definition of the friction parameter highlights a clear separation on the parameter plane (ϕ0,ε0) between tidal-bore estuaries and non tidal-bore estuaries. More specifically, we have established that tidal bores occur in convergent estuaries when the nonlinearity parameter is greater than a critical value, εc , which is an increasing function of the friction parameter ϕ0. This result has been confirmed by numerical simulations of the two-dimensional Saint Venant equations. The real-estuary observations and the numerical simulations also show that, contrary to what is generally assumed, tide amplification is not a necessary condition for tidal bore formation. The effect of freshwater discharge on tidal bore occurrence has been analyzed from the database acquired during three long-term campaigns carried out on the Gironde/Garonne estuary. We have shown that in the upper estuary the tidal bore intensity is mainly governed by the local dimensionless tide amplitude ε. The bore intensity is an increasing function of ε and this relationship does not depend on freshwater discharge. However, freshwater discharge damps the tidal wave during its propagation and thus reduces ε and consequently limits the tidal bore development in the estuary. To take into account this process in the tidal-bore scaling analysis, it is necessary to introduce a fourth external parameter, the dimensionless river discharge Q0 .

The role of extreme floods in estuary-coastal behaviour: contrasts between river- and tide-dominated microtidal estuaries

NASA Astrophysics Data System (ADS)

Cooper, J. A. G.

2002-06-01

Contrasting modes of sedimentation and facies arrangement in tide- and river-dominated microtidal estuaries arise from the degree to which river or tidal discharge and sediment supply influences an estuary. A distinct facies gradation exists in tide-dominated systems from sandy, barrier/tidal delta-associated environments at the coast through deep mud-dominated middle reaches to fluvial sediment in the upper reaches. In river-dominated systems, fluvial sediment extends to the barrier and flood-tidal deltas are poorly developed or absent from the estuary. A number of independent observations during extreme floods on the South African coast indicate that these types of estuary respond differently to extreme river floods and that the mode of response corresponds to estuary type. Tide-dominated systems exhibit preferential erosion of noncohesive barrier and tidal delta sediments during river floods while the middle reaches remain little modified. River-dominated systems experience consistent erosion throughout their channel length during extreme floods. The increased cohesion of riverine sediments and stabilisation of bars by vegetation in river-dominated channels means that higher magnitude floods are necessary to effect significant morphological change. Barrier erosion, including the tidal delta, results in deposition of an ephemeral delta composed almost entirely of sands from these deposits in tide-dominated estuaries. In river-dominated systems, eroded channel sediments and material from the river catchment may augment barrier sediments in the ephemeral delta deposit. Post-flood, wave-reworking of ephemeral delta sediments acts to restore barriers to pre-flood morphology within a few years; however, in river-dominated systems, the additional sediment volume may produce significant coastal progradation that requires several years or decades to redistribute. These different modes of flood response mediated by the nature of the estuary have implications for coastal behaviour at the time scale of months to several decades. Estuary-coastal behaviour at river-dominated estuaries may be influenced for several decades by post-flood morphological adjustment. Tide-dominated estuaries, however, respond more rapidly in reworking flood-eroded sediment and are typically fully adjusted to modal wave and tidal conditions within a few months to a few years. In addition, the facies arrangement within the two estuary types renders tide-dominated estuaries more responsive to minor floods, while river-dominated estuaries, by virtue of more cohesive channel sediments, require greater discharges to effect significant morphological change.

ECOLOGICAL CONDITION OF THE U.S. MID-ATLANTIC ESTUARIES: THE MID-ATLANTIC INTEGRATED ASSESSMENT (MAIA)

EPA Science Inventory

The Mid-Atlantic Integrated Assessment (MAIA-Estuaries) evaluated ecological conditions in US Mid-Atlantic estuaries during the summers of 1997 and 1998. Over 800 probability-based stations were monitored in four main estuarine systems?Chesapeake Bay, the Delaware Estuary, Maryla...

A Simple Model of Nitrogen Concentration, Throughput, and Denitrification in Estuaries

EPA Science Inventory

The Estuary Nitrogen Model (ENM) is a mass balance model that includes calculation of nitrogen losses within bays and estuaries using system flushing time. The model has been used to demonstrate the dependence of throughput and denitrification of nitrogen in bays and estuaries on...

Influence of Exceptionally High Salinities, Marked Variations in Freshwater Discharge and Opening of Estuary Mouth on the Characteristics of the Ichthyofauna of a Normally-Closed Estuary

NASA Astrophysics Data System (ADS)

Young, G. C.; Potter, I. C.

2002-08-01

This study aimed to determine how the characteristics of the ichthyofauna of the normally-closed Wellstead Estuary on the south coast of Western Australia are influenced by the exceptionally high salinities attained during protracted periods of landlocking and, at other times, by atypically heavy freshwater discharge and consequently the opening of the estuary mouth. After 47 months of continuous closure, this estuary became open to the sea for 30 days in September/October 1997 and then closed again for a further six months. Nearshore, shallow and offshore, deeper waters of the lower, middle and upper regions of this estuary were sampled using seine and gill nets, respectively, in alternate months between July 1996 and May 1998. Mean monthly salinities in each region were >40 on all sampling occasions, except immediately preceding and following the opening of the estuary mouth and, in the lower estuary, they rose to a maximum of 112 in March 1997, before declining to a minimum of 14 in September 1997. The fish fauna of Wellstead Estuary was highly depauperate (20 species), presumably due mainly to the very limited opportunities for the immigration of marine species. However, appreciable numbers of two marine species ( Mugil cephalus and Aldrichetta forsteri) entered from the sea when the estuary was open in the period prior to October 1993 and were able to survive in the highly variable salinities found in this estuary when it was landlocked for the following 47 months. There was strong evidence that, as salinities rose to very high levels in 1997, all of the Leptatherina wallacei and Amoya bifrenatus found in the estuary died and some other species moved from the lower to upper reaches of the estuary where salinities did not rise to such high levels. The atherinid Atherinosoma elongata was the only species caught in March 1997 at the site in the lower estuary where the salinity reached 122. Subsequently, the number of species and overall density of fish in the lower estuary, and particularly in nearshore, shallow waters, increased markedly, presumably due to the downstream flushing effects of heavy freshwater discharge and a decline in salinity. When the bar was breached, small numbers of certain marine species, e.g. Sardinops neopilchardus, Sillaginodes punctata, Arripis georgiana, Arripis truttaceus and Pomatomus saltatrix, entered from the sea, while some individuals of M. cephalus and A. forsteri emigrated from the estuary.

Plant zonation in a tropical irregular estuary: can large occurrence zones be explained by a tradeoff model?

PubMed

Ribeiro, J P N; Matsumoto, R S; Takao, L K; Lima, M I S

2015-08-01

Estuaries present an environmental gradient that ranges from almost fresh water conditions to almost marine conditions. Salinity and flooding are the main abiotic drivers for plants. Therefore, plant zonation in estuaries is closely related to the tidal cycles. It is expected that the competitive abilities of plants would be inversely related to the tolerance toward environmental stress (tradeoff). Thus, in estuaries, plant zonation tends to be controlled by the environment near the sandbar and by competition away from it. This zonation pattern has been proposed for regular non-tropical estuaries. For tropical estuaries, the relative importance of rain is higher, and it is not clear to what extent this model can be extrapolated. We measured the tidal influence along the environmental gradient of a tropical irregular estuary and quantified the relative importance of the environment and the co-occurrence degree. Contrary to the narrow occurrence zone that would be expected for regular estuaries, plants presented large occurrence zones. However, the relative importance of the environment and competition followed the same patterns proposed for regular estuaries. The environmental conditions allow plants to occur in larger zones, but these zones arise from smaller and infrequent patches distributed across a larger area, and most species populations are concentrated in relatively narrow zones. Thus, we concluded that the zonation pattern in the Massaguaçu River estuary agrees with the tradeoff model.

Metal and Isotope Analysis of Bird Feathers in a Contaminated Estuary Reveals Bioaccumulation, Biomagnification, and Potential Toxic Effects.

PubMed

Einoder, L D; MacLeod, C K; Coughanowr, C

2018-07-01

The Derwent estuary, in south east Tasmania, is highly contaminated with heavy metals, mainly due to past industrial pollution. This study sought to determine the extent of contamination, bioaccumulation, and biomagnification in the resident bird community and therefore to infer the potential for adverse effects in birds. Thirteen metals were measured from breast feathers (n = 51 individuals) of eight sympatric species of aquatic bird. Stable carbon (δ 13 C) and nitrogen (δ 15 N) isotopes were used to identify dietary sources of contaminants, trophic level, and potential biomagnification through food chains. Generalised linear models revealed that metal burdens were often poorly correlated with δ 13 C, indicating their uptake from a range of freshwater, brackish, and marine carbon sources-not surprising due to widespread contamination across the tidal estuary. Feather mercury increased significantly with trophic level (inferred from δ 15 N). White-bellied Sea-eagle Haliaeetus leucogaster samples contained 240 times more mercury than feral Goose Anser cygnoides. Feather arsenic and copper concentrations were significantly higher in birds feeding lower in the food chain. For several piscivorous species, both chick and adults were sampled revealing significantly higher feather mercury, zinc, and selenium in adults. Feathers from birds found dead along the banks of the estuary had significantly higher lead loads than from live birds, and numerous individuals had levels of mercury, zinc, and lead above toxic thresholds reported in other studies. These results highlight the need to include biota from higher trophic levels in contaminant monitoring programs to understand fully the fate and broader implications of contaminants in the environment.

Mixed-sediment transport modelling in Scheldt estuary with a physics-based bottom friction law

NASA Astrophysics Data System (ADS)

Bi, Qilong; Toorman, Erik A.

2015-04-01

In this study, the main object is to investigate the performance of a few new physics-based process models by implementation into a numerical model for the simulation of the flow and morphodynamics in the Western Scheldt estuary. In order to deal with the complexity within the research domain, and improve the prediction accuracy, a 2D depth-averaged model has been set up as realistic as possible, i.e. including two-way hydrodynamic-sediment transport coupling, mixed sand-mud sediment transport (bedload transport as well as suspended load in the water column) and a dynamic non-uniform bed composition. A newly developed bottom friction law, based on a generalised mixing-length (GML) theory, is implemented, with which the new bed shear stress closure is constructed as the superposition of the turbulent and the laminar contribution. It allows the simulation of all turbulence conditions (fully developed turbulence, from hydraulic rough to hydraulic smooth, transient and laminar), and the drying and wetting of intertidal flats can now be modelled without specifying an inundation threshold. The benefit is that intertidal morphodynamics can now be modelled with great detail for the first time. Erosion and deposition in these areas can now be estimated with much higher accuracy, as well as their contribution to the overall net fluxes. Furthermore, Krone's deposition law has been adapted to sand-mud mixtures, and the critical stresses for deposition are computed from suspension capacity theory, instead of being tuned. The model has been calibrated and results show considerable differences in sediment fluxes, compared to a traditional approach and the analysis also reveals that the concentration effects play a very important role. The new bottom friction law with concentration effects can considerably alter the total sediment flux in the estuary not only in terms of magnitude but also in terms of erosion and deposition patterns.

From headwaters to coast: Influence of human activities on water quality of the Potomac River Estuary

USGS Publications Warehouse

Bricker, Suzanne B.; Rice, Karen C.; Bricker, Owen P.

2014-01-01

The natural aging process of Chesapeake Bay and its tributary estuaries has been accelerated by human activities around the shoreline and within the watershed, increasing sediment and nutrient loads delivered to the bay. Riverine nutrients cause algal growth in the bay leading to reductions in light penetration with consequent declines in sea grass growth, smothering of bottom-dwelling organisms, and decreases in bottom-water dissolved oxygen as algal blooms decay. Historically, bay waters were filtered by oysters, but declines in oyster populations from overfishing and disease have led to higher concentrations of fine-sediment particles and phytoplankton in the water column. Assessments of water and biological resource quality in Chesapeake Bay and tributaries, such as the Potomac River, show a continual degraded state. In this paper, we pay tribute to Owen Bricker’s comprehensive, holistic scientific perspective using an approach that examines the connection between watershed and estuary. We evaluated nitrogen inputs from Potomac River headwaters, nutrient-related conditions within the estuary, and considered the use of shellfish aquaculture as an in-the-water nutrient management measure. Data from headwaters, nontidal, and estuarine portions of the Potomac River watershed and estuary were analyzed to examine the contribution from different parts of the watershed to total nitrogen loads to the estuary. An eutrophication model was applied to these data to evaluate eutrophication status and changes since the early 1990s and for comparison to regional and national conditions. A farm-scale aquaculture model was applied and results scaled to the estuary to determine the potential for shellfish (oyster) aquaculture to mediate eutrophication impacts. Results showed that (1) the contribution to nitrogen loads from headwater streams is small (about 2 %) of total inputs to the Potomac River Estuary; (2) eutrophic conditions in the Potomac River Estuary have improved in the upper estuary since the early 1990s, but have worsened in the lower estuary. The overall system-wide eutrophication impact is high, despite a decrease in nitrogen loads from the upper basin and declining surface water nitrate nitrogen concentrations over that period; (3) eutrophic conditions in the Potomac River Estuary are representative of Chesapeake Bay region and other US estuaries; moderate to high levels of nutrient-related degradation occur in about 65 % of US estuaries, particularly river-dominated low-flow systems such as the Potomac River Estuary; and (4) shellfish (oyster) aquaculture could remove eutrophication impacts directly from the estuary through harvest but should be considered a complement—not a substitute—for land-based measures. The total nitrogen load could be removed if 40 % of the Potomac River Estuary bottom was in shellfish cultivation; a combination of aquaculture and restoration of oyster reefs may provide larger benefits.

Winter nutrient behaviours in the Pearl River estuary

NASA Astrophysics Data System (ADS)

Wang, G.; Jin, S.; Du, M.

2017-12-01

Nutrient (nitrate, nitrite, ammonium, phosphate, and silicate) mapping and time-series investigation were carried out in winter in the Pearl River estuary, China. These nutrients behaved non-conservatively in the upper estuary. In the middle and lower estuary, however, nitrate and silicate seemed to be controled by physical mixing, while additions of nitrite, ammonium, and phosphate were found in the middle estuary. Nitrate was the dominant disslved inorganic nitrogen, with a fraction of more than 2/3. From the upper to the lower estuary the N:P ratio decreased from more than 200 to near the Redfield ratio of 16. Nutrients near the surface behaved almost the same as near the bottom in the water column at both the uppper and lower estuary. During a tidal cycle these nutrients seemed to be regulated more by physical mixing than by other processes.

Stable Isotope Identification of Nitrogen Sources for United States (U.S.) Pacific Coast Estuaries

NASA Astrophysics Data System (ADS)

Brown, C. A.; Kaldy, J. E.; Fong, P.; Fong, C.; Mochon Collura, T.; Clinton, P.

2016-02-01

Nutrients are the leading cause of water quality impairments in the United States, and as a result tools are needed to identify the sources of nutrients. We used natural abundance stable isotope data to evaluate nitrogen sources to U.S. west coast estuaries. We collected macroalgae and analyzed these samples for natural abundance of stable isotopes (δ15N) and supplemented this with available data from the literature for estuaries from Mexico to Alaska. Stable isotope ratios of green macroalgae were compared to δ15N of dissolved inorganic nitrogen of oceanic and watershed end members. There was a latitudinal gradient in δ15N of macroalgae with southern estuaries being 7 per mil heavier than northern estuaries. Gradients in isotope data were compared to nitrogen sources estimated by the USGS using the SPARROW model. In California estuaries, the elevation of isotope data appeared to be related to anthropogenic nitrogen sources. In Oregon systems, the nitrogen levels of streams flowing into the estuaries are related to forest cover, rather than to developed land classes. In Oregon estuaries, the δ15N of macroalgae suggested that the ocean and nitrogen-fixing trees in the watersheds were the dominant nitrogen sources with heavier sites located near the estuary mouth. In California estuaries, the gradient was reversed with heavier sites located upriver. In some Oregon estuaries, there was an elevation an elevation of δ15N above marine end members in the vicinity of wastewater treatment facility discharge locations, suggesting isotopes may be useful for distinguishing inputs along an estuarine gradient.

Temporal changes in physical, chemical and biological sediment parameters in a tropical estuary after mangrove deforestation

NASA Astrophysics Data System (ADS)

Ellegaard, Marianne; Nguyen, Ngoc Tuong Giang; Andersen, Thorbjørn Joest; Michelsen, Anders; Nguyen, Ngoc Lam; Doan, Nhu Hai; Kristensen, Erik; Weckström, Kaarina; Son, Tong Phuoc Hoang; Lund-Hansen, Lars Chresten

2014-04-01

Dated sediment cores taken near the head and mouth of a tropical estuary, Nha-Phu/Binh Cang, in south central Viet Nam were analyzed for changes over time in physical, chemical and biological proxies potentially influenced by removal of the mangrove forest lining the estuary. A time-series of satellite images was obtained, which showed that the depletion of the mangrove forest at the head of the estuary was relatively recent. Most of the area was converted into aquaculture ponds, mainly in the late 1990's. The sediment record showed a clear increase in sedimentation rate at the head of the estuary at the time of mangrove deforestation and a change in diatom assemblages in the core from the mouth of the estuary indicating an increase in the water column turbidity of the entire estuary at the time of the mangrove deforestation. The proportion of fine-grained sediment and the δ13C signal both increased with distance from the head of the estuary while the carbon content decreased. The nitrogen content and the δ15N signal were more or less constant throughout the estuary. The proportion of fine-grained material and the chemical proxies were more or less stable over time in the core from the mouth while they varied synchronously over time in the core from the head of the estuary. The sediment proxies combined show that mangrove deforestation had large effects on the estuary with regard to both the physical and chemical environment with implications for the biological functioning.

E-Estuary: Developing a Decision Support System for Coastal Management in the Conterminous United States (IAHR)

EPA Science Inventory

Ready access to geographic information is needed to support management decisions for estuaries at local, state, regional, and national scales. The U.S. Environmental Protection Agency (US EPA) is developing e-Estuary, a decision-support system for coastal management. E-Estuary ...

E-Estuary: Developing a Decision-support System for Coastal Management in the Counterminous Untied States (Coastal Geotools 09)

EPA Science Inventory

Ready access to geographic information is needed to support management decisions for estuaries at local, state, regional, and national scales. The U.S. Environmental Protection Agency (US EPA) is developing e-Estuary, a decision-support system for coastal management. E-Estuary ...

E-estuary: A Decision Support System for Coastal Water and Ecosystem Management in the US (CZ09)

EPA Science Inventory

Ready access to geographic information is needed to support management decisions for estuaries at local, state, regional, and national scales. The U.S. Environmental Protection Agency (US EPA) is developing e-Estuary, a decision-support system for coastal management. E-Estuary ...

SAN FRANCISCO ESTUARY PROJECT COMPREHENSIVE CONSERVATION AND MANAGEMENT PLAN

EPA Science Inventory

The Estuary, a significant natural resource, San Francisco Bay and the Delta combine to form the West Coast's largest estuary. The Estuary conveys the waters of the Sacramento and San Joaquin Rivers to the Pacific Ocean. It encompasses roughly 1,600 square miles, drains over 40 p...

The relative importance of oceanic nutrient inputs for Bass Harbor Marsh Estuary at Acadia National Park, Maine

USGS Publications Warehouse

Huntington, Thomas G.; Culbertson, Charles W.; Fuller, Christopher; Glibert, Patricia; Sturtevant, Luke

2014-01-01

The U.S. Geological Survey and Acadia National Park (ANP) collaborated on a study of nutrient inputs into Bass Harbor Marsh Estuary on Mount Desert Island, Maine, to better understand ongoing eutrophication, oceanic nutrient inputs, and potential management solutions. This report includes the estimation of loads of nitrate, ammonia, total dissolved nitrogen, and total dissolved phosphorus to the estuary derived from runoff within the watershed and oceanic inputs during summers 2011 and 2012. Nutrient outputs from the estuary were also monitored, and nutrient inputs in direct precipitation to the estuary were calculated. Specific conductance, water temperature, and turbidity were monitored at the estuary outlet. This report presents a first-order analysis of the potential effects of projected sea-level rise on the inundated area and estuary volume. Historical aerial photographs were used to investigate the possibility of widening of the estuary channel over time. The scope of this report also includes analysis of sediment cores collected from the estuary and fringing marsh surfaces to assess the sediment mass accumulation rate. Median concentrations of nitrate, ammonium, and total dissolved phosphorus on the flood tide were approximately 25 percent higher than on the ebb tide during the 2011 and 2012 summer seasons. Higher concentrations on the flood tide suggest net assimilation of these nutrients in biota within the estuary. The dissolved organic nitrogen fraction dominated the dissolved nitrogen fraction in all tributaries. The median concentration of dissolved organic nitrogen was about twice as high on the on the ebb tide than the flood tide, indicating net export of dissolved organic nitrogen from the estuary. The weekly total oceanic inputs of nitrate, ammonium, and total dissolved phosphorus to the estuary were usually much larger than inputs from runoff or direct precipitation. The estuary was a net sink for nitrate and ammonium in most weeks during both years. Oceanic inputs of nitrate and ammonium were an important source of inorganic nitrogen to the estuary in both years. In both years, the total seasonal inputs of ammonium to the estuary in flood tides were much larger than the inputs from watershed runoff or direct precipitation. In 2011, the total seasonal input of nitrate from flood tides to the estuary was more than twice as large the inputs from watershed runoff and precipitation, but in 2012, the inputs from flood tides were only marginally larger than the inputs from watershed runoff and precipitation. Turbidity was measured intermittently in 2012, and the pattern that emerged from the measurements indicated that the estuary was a source of particulate matter to the ocean rather than the ocean being a source to the estuary. From the nutrient budgets determined for the estuary it is evident that oceanic sources of nitrate and ammonium are an important part of the supply of nutrients that are contributing to the growth of macroalgae in the estuary. The relative importance of these oceanic nutrients compared with sources within the watershed typically increases as the summer progresses and runoff decreases. It is likely that rising sea levels, estimated by the National Oceanic and Atmospheric Administration to be 11 centimeters from 1950 through 2006 in nearby Bar Harbor, have resulted in an increase in oceanic inputs (tidal volume and nutrients derived from oceanic sources).

Processes forcing the suspended sediments distribution in a wide, shallow and microtidal estuary: a numerical case study for the Río de la Plata

NASA Astrophysics Data System (ADS)

Simionato, Claudia; Moreira, Diego

2017-04-01

The impact of the diverse mechanisms driving the suspended sediments distribution in the wide, shallow and microtidal Río de la Plata (RdP) estuary and the adjacent shelf is studied by means of a set of process-oriented numerical simulations. With that aim, a regional application of the hydro-sedimentological Model for Applications at Regional Scale (MARS) is implemented, tested and run under diverse conditions. Even the simulations are idealized, they reproduce both qualitatively and quantitatively well the main features of the suspended sediments observed distribution, particularly the mean values of concentration and its gradients: perpendicular to the estuary axis at the upper and intermediate RdP and parallel to the estuary axis at its outer part. Even though naturally the diameter of the sediments that deposit decays with the distance to the sources (with sands and silts dominating in the upper estuary and fine silts and clays over the Barra del Indio), model results show that the large width and the geometry of the estuary play an important role in the sedimentation process. The widening and deepening, and the associated significant reduction of the currents speed that occurs after (i) the confluence of the tributaries and (ii) downstream the Barra del Indio Shoal, favors sediments deposition downstream those areas. Even though tides are of small amplitude in the study area, they have a significant impact on the lateral mixing and the re-suspension of bottom sediments; this last augments the concentration of fine sediments in the layers close to the bottom but their energy is not enough to rise them up to the surface. The model reproduces the increment in the concentration of fine sediments observed in the areas where tidal dissipation energy by bottom friction maximizes (over the southern coast of the RdP and around Punta Piedras and Punta Rasa), but shows that tides alone cannot account for the observed maxima. Winds (which can be quite large over this area) enhance horizontal mixing, smoothing the pattern produced by the tides. Wind waves are the most important forcing for the vertical mixing of the sediments. Their effect is most evident along the southern coast of the RdP and the Barra del Indio Shoal, where wind waves rise to the surface the sediments resuspended by tides. The bottom salinity front acts retaining the sediments upstream the Barra del Indio shoal; there, estuarine currents and flocculation play an important role in sediments deposition.

Management case study: Tampa Bay, Florida

USGS Publications Warehouse

Morrison, Gerold; Greening, Holly; Yates, Kimberly K.; Wolanski, Eric; McLusky, Donald S.

2011-01-01

Tampa Bay, Florida, USA, is a shallow, subtropical estuary that experienced severe cultural eutrophication between the 1940s and 1980s, a period when the human population of its watershed quadrupled. In response, citizen action led to the formation of a public- and private-sector partnership (the Tampa Bay Estuary Program), which adopted a number of management objectives to support the restoration and protection of the bay’s living resources. These included numeric chlorophyll a and water-clarity targets, as well as long-term goals addressing the spatial extent of seagrasses and other selected habitat types, to support estuarine-dependent faunal guilds. Over the past three decades, nitrogen controls involving sources such as wastewater treatment plants, stormwater conveyance systems, fertilizer manufacturing and shipping operations, and power plants have been undertaken to meet these and other management objectives. Cumulatively, these controls have resulted in a 60% reduction in annual total nitrogen (TN) loads relative to earlier worse-case (latter 1970s) conditions. As a result, annual water-clarity and chlorophyll a targets are currently met in most years, and seagrass cover measured in 2008 was the highest recorded since 1950. Factors that have contributed to the observed improvements in Tampa Bay over the past several decades include the following: (1) Development of numeric, science-based water-quality targets to meet a long-term goal of restoring seagrass acreage to 1950s levels. Empirical and mechanistic models found that annual average chlorophyll a concentrations were a primary manageable factor affecting light attenuation. The models also quantified relationships between TN loads, chlorophyll a concentrations, light attenuation, and fluctuations in seagrass cover. The availability of long-term monitoring data, and a systematic process for using the data to evaluate the effectiveness of management actions, has allowed managers to track progress and make adaptive changes when needed. (2) Citizen involvement, that is, the initial reductions in TN loads, which occurred in the late 1970s and early 1980s, was a result of state regulations that were developed in response to citizens’ call for action. Improved water clarity and better fishing and swimming conditions were identified as primary goals by citizens again in the early 1990s, and led to development of numeric water-quality targets and seagrass restoration goals. More recent citizen actions, from pet waste campaigns to support of reductions in residential fertilizer use, are important elements of the nitrogen management strategy. (3) Collaborative actions, that is, in addition to numerous other collaborative ventures that have benefitted Tampa Bay, the public/private Nitrogen Management Consortium, which includes more than 40 participating organizations, has implemented over 250 nutrient-reduction projects. These projects have addressed stormwater treatment, fertilizer manufacturing and shipping, agricultural practices, reclaimed water use, and atmospheric emissions from local power stations, providing more than 300 tons of TN load reductions since 1995. (4) State and federal regulatory programs, that is, regulatory requirements, such as state statutes and rules requiring compliance with advanced wastewater treatment standards by municipal sewerage works, have played a key role in Tampa Bay management efforts. The technical basis and implementation plan of the Tampa Bay nitrogen management strategy have been developed in cooperation with state and federal regulatory agencies, and the strategy has been recognized by them as an appropriate tool for meeting water-quality standards, including federally mandated total maximum daily loads. Subsequent management efforts have focused on maintaining and extending those improvements in Tampa Bay’s environmental resources by addressing water and sediment quality and habitat protection and restoration. Implementation of a collaborative, watershed-based management process, driven by an integrated science approach, has played a central role in supporting progress toward the achievement of science-based estuary management goals.

SENSITIVITY OF NITROGEN CONCENTRATIONS IN ESTUARIES TO LOADING AND WATER RESIDENCE TIME: APPLICATION TO THE POTOMAC ESTUARY

EPA Science Inventory

We use a simple nitrogen budget model to analyze concentrations of total nitrogen (TN) in estuaries for which both nitrogen inputs and water residence time are correlated with freshwater inflow rates. While the nitrogen concentration of an estuary varies linearly with TN loading ...

AN APPROACH TO DEVELOPING NUTRIENT CRITERIA FOR PACIFIC NORTHWEST ESTUARIES: A CASE STUDY OF YAQUINA ESTUARY, OREGON

EPA Science Inventory

NHEERL scientists have developed an approach that could be used by the State of Oregon for development of nutrient and other water quality criteria for the Yaquina Estuary, Oregon. The principle objective in setting protective criteria is to prevent future degradation of estuari...

33 CFR 165.1190 - Security Zone; San Francisco Bay, Oakland Estuary, Alameda, CA.

Code of Federal Regulations, 2011 CFR

2011-07-01

..., Oakland Estuary, Alameda, CA. 165.1190 Section 165.1190 Navigation and Navigable Waters COAST GUARD... § 165.1190 Security Zone; San Francisco Bay, Oakland Estuary, Alameda, CA. (a) Location. The following area is a security zone: All navigable waters of the Oakland Estuary, California, from the surface to...

33 CFR 165.1190 - Security Zone; San Francisco Bay, Oakland Estuary, Alameda, CA.

Code of Federal Regulations, 2013 CFR

2013-07-01

..., Oakland Estuary, Alameda, CA. 165.1190 Section 165.1190 Navigation and Navigable Waters COAST GUARD... § 165.1190 Security Zone; San Francisco Bay, Oakland Estuary, Alameda, CA. (a) Location. The following area is a security zone: All navigable waters of the Oakland Estuary, California, from the surface to...

The Estuary Guide. Level 3: High School. Draft.

ERIC Educational Resources Information Center

Alexander, Glen; And Others

Estuaries are marine systems that serve as nurseries for animals, links in the migratory pathways, and habitat for a complex community of organisms. This curriculum guide intended for use at the high school level seeks to teach what estuaries are; provide opportunities to practice decision-making that affects estuaries; and encourage students to…

33 CFR 165.1190 - Security Zone; San Francisco Bay, Oakland Estuary, Alameda, CA.

Code of Federal Regulations, 2010 CFR

2010-07-01

..., Oakland Estuary, Alameda, CA. 165.1190 Section 165.1190 Navigation and Navigable Waters COAST GUARD... § 165.1190 Security Zone; San Francisco Bay, Oakland Estuary, Alameda, CA. (a) Location. The following area is a security zone: All navigable waters of the Oakland Estuary, California, from the surface to...

33 CFR 165.1190 - Security Zone; San Francisco Bay, Oakland Estuary, Alameda, CA.

Code of Federal Regulations, 2012 CFR

2012-07-01

..., Oakland Estuary, Alameda, CA. 165.1190 Section 165.1190 Navigation and Navigable Waters COAST GUARD... § 165.1190 Security Zone; San Francisco Bay, Oakland Estuary, Alameda, CA. (a) Location. The following area is a security zone: All navigable waters of the Oakland Estuary, California, from the surface to...

33 CFR 165.1190 - Security Zone; San Francisco Bay, Oakland Estuary, Alameda, CA.

Code of Federal Regulations, 2014 CFR

2014-07-01

..., Oakland Estuary, Alameda, CA. 165.1190 Section 165.1190 Navigation and Navigable Waters COAST GUARD... § 165.1190 Security Zone; San Francisco Bay, Oakland Estuary, Alameda, CA. (a) Location. The following area is a security zone: All navigable waters of the Oakland Estuary, California, from the surface to...

Seasonal variation in denitrification and dissimilatory nitrate reduction to ammonia process rates and corresponding key functional genes along an estuarine nitrate gradient

PubMed Central

Smith, Cindy J.; Dong, Liang F.; Wilson, John; Stott, Andrew; Osborn, A. Mark; Nedwell, David B.

2015-01-01

This research investigated spatial-temporal variation in benthic bacterial community structure, rates of denitrification and dissimilatory nitrate reduction to ammonium (DNRA) processes and abundances of corresponding genes and transcripts at three sites—the estuary-head, mid-estuary and the estuary mouth (EM) along the nitrate gradient of the Colne estuary over an annual cycle. Denitrification rates declined down the estuary, while DNRA rates were higher at the estuary head and middle than the EM. In four out of the six 2-monthly time-points, rates of DNRA were greater than denitrification at each site. Abundance of gene markers for nitrate-reduction (nitrate reductase narG and napA), denitrification (nitrite reductase nirS) and DNRA (DNRA nitrite reductase nrfA) declined along the estuary with significant relationships between denitrification and nirS abundance, and DNRA and nrfA abundance. Spatially, rates of denitrification, DNRA and corresponding functional gene abundances decreased along the estuary. However, temporal correlations between rate processes and functional gene and transcript abundances were not observed. PMID:26082763

A review of land–sea coupling by groundwater discharge of nitrogen to New England estuaries: Mechanisms and effects

USGS Publications Warehouse

2007-01-01

Hydrologists have long been concerned with the interface of groundwater flow into estuaries, but not until the end of the last century did other disciplines realize the major role played by groundwater transport of nutrients to estuaries. Mass balance and stable isotopic data suggest that land-derived NO3, NH4, and dissolved organic N do enter estuaries in amounts likely to affect the function of the receiving ecosystem. Because of increasing human occupancy of the coastal zone, the nutrient loads borne by groundwater have increased in recent decades, in spite of substantial interception of nutrients within the land and aquifer components of watersheds. Groundwater-borne nutrient loads have increased the N content of receiving estuaries, increased phytoplankton and macroalgal production and biomass, decreased the area of seagrasses, and created a cascade of associated ecological changes. This linkage between land use and eutrophication of estuaries occurs in spite of mechanisms, including uptake of land-derived N by riparian vegetation and fringing wetlands, “unloading” by rapid water removal, and direct N inputs to estuaries, that tend to uncouple the effects of land use on receiving estuaries. It can be expected that as human activity on coastal watersheds continues to increase, the role of groundwater-borne nutrients to the receiving estuary will also increase.

Benthic macrofaunal dynamics and environmental stress across a salt wedge Mediterranean estuary.

PubMed

Nebra, Alfonso; Alcaraz, Carles; Caiola, Nuno; Muñoz-Camarillo, Gloria; Ibáñez, Carles

2016-06-01

The spatial distribution of benthic macroinvertebrate community in relation to environmental factors was studied along the Ebro Estuary (NE Iberian Peninsula), a salt wedge Mediterranean estuary. Both ordination methods and generalized additive models were performed to identify the different benthic assemblages and their relationship to abiotic factors. Our results showed a strong relationship between macrofaunal assemblages and the predominant environmental gradients (e.g. salinity); thus revealing spatial differences in their structure and composition. Two different stretches were identified, namely the upper (UE) and the lower Ebro Estuary (LE). UE showed riverine characteristics and hence was colonized by a freshwater community; whereas LE was influenced by marine intrusion and sustained a complex marine-origin community. However, within each stretch, water and sediment characteristics played an important role in explaining species composition differences among sampling stations. Moreover, outcomes suggested a total species replacement pattern, instead of the nestedness pattern usually associated with well-mixed temperate estuaries. The sharp species turnover together with the estuarine stratification point out that the Ebro Estuary is working, in terms of ecological boundaries, under an ecotone model. Finally, despite obvious differences with well mixed estuaries (i.e. lack of tidal influence, stratification and species turnover), the Ebro Estuary shares important ecological attributes with well-mixed temperate estuaries. Copyright © 2016 Elsevier Ltd. All rights reserved.

NEW YORK-NEW JERSEY HARBOR ESTUARY PROGRAM INCLUDING THE BIGHT RESTORATION PLAN FINAL COMPREHENSIVE CONSERVATION AND MANAGEMENT PLAN

EPA Science Inventory

New York-New Jersey Harbor and the New York Bight are extraordinary in many ways -- their abundant resources, their beauty, and their many competing uses. The Harbor/Bight abounds with diverse natural resources, yet it is the heart of the most densely populated region of the nati...

Regional acidification trends in Florida shellfish estuaries: A 20+ year look at pH, oxygen, temperature, and salinity

USGS Publications Warehouse

Robbins, Lisa L.; Lisle, John T.

2018-01-01

Increasing global CO2 and local land use changes coupled with increased nutrient pollution are threatening estuaries worldwide. Local changes of estuarine chemistry have been documented, but regional associations and trends comparing multiple estuaries latitudinally have not been evaluated. Rapid climate change has impacted the annual and decadal chemical trends in estuaries, with local ecosystem processes enhancing or mitigating the responses. Here, we compare pH, dissolved oxygen, temperature, and salinity data from 10 Florida shellfish estuaries and hundreds of shellfish bed stations. Over 80,000 measurements, spanning from 1980 to 2008, taken on Atlantic Ocean and West Florida coast showed significant regional trends of consistent pH decreases in 8 out of the 10 estuaries, with an average rate of decrease on the Gulf of Mexico side estuaries of Florida of 7.3 × 10−4 pH units year−1, and average decrease on the Atlantic Coast estuaries of 5.0 × 10−4 pH units year−1. The rates are approximately 2–3.4 times slower than observed in pH decreases associated with ocean acidification in the Atlantic and Pacific. Other significant trends observed include decreasing dissolved oxygen in 9 out of the 10 estuaries, increasing salinity in 6 out of the 10, and temperature increases in 3 out of the 10 estuaries. The data provide a synoptic regional view of Florida estuary trends which reflect the complexity of changing climate and coastal ocean acidification superimposed on local conditions. These data provide context for understanding, and interpreting the past and predicting future of regional water quality health of shellfish and other organisms of commercial and ecological significance along Florida’s coasts.

Polycyclic aromatic hydrocarbons (PAHs) in water from three estuaries of China: Distribution, seasonal variations and ecological risk assessment.

PubMed

Yan, Jinxia; Liu, Jingling; Shi, Xuan; You, Xiaoguang; Cao, Zhiguo

2016-08-15

The distribution, seasonal variations and ecological risk assessment of polycyclic aromatic hydrocarbons (PAHs) in water from three estuaries in Hai River Basin of China, which has been suffering from different anthropogenic pressures, were investigated. In three estuaries, the average concentration of ΣPAHs was the lowest in Luan River estuary, followed by Hai River estuary, and the highest in Zhangweixin River estuary. There were significant seasonal variations in ΣPAHs, the concentrations of ΣPAHs were higher in November than in May and August. The composition profiles of PAHs in different sites were significantly different, and illustrated seasonal variations. Generally, 2-ring (Nap) and 3-ring PAHs (Acp, Fl and Phe) were the most abundant components at most sampling sites in three estuaries. The PAHs in three estuaries were mainly originated from pyrogenic sources. A method based on toxic equivalency factors (TEFs) and risk quotient (RQ) was proposed to assess the ecological risk of ΣPAHs, with the ecological risk of individual PAHs being considered separately. The results showed that the ecological risks caused by ΣPAHs were high in Hai River estuary and Zhangweixin River estuary, and moderate in Luan River estuary. The mean values of ecological risk in August were lower than those in November. The contributions of individual PAHs to ecological risk were different in May, August and November. 3-ring and 4-ring PAHs accounted for much more ecological risk than 2-ring, 5-ring and 6-ring, although the contributions of 5-ring and 6-ring to ecological risk were higher than these to PAHs concentrations. Copyright © 2016 Elsevier Ltd. All rights reserved.

Species Sorting of Benthic Invertebrates in a Salinity Gradient - Importance of Dispersal Limitation.

PubMed

Josefson, Alf B

2016-01-01

The relative importance of environment and dispersal related processes for community assembly has attracted great interest over recent decades, but few empirical studies from the marine/estuarine realm have examined the possible effects of these two types of factors in the same system. Importance of these processes was investigated in a hypothetical metacommunity of benthic invertebrates in 16 micro-tidal estuaries connected to the same open sea area. The estuaries differed in size and connectivity to the open sea and represented a salinity gradient across the estuaries. The Elements of Metacommunity Structure (EMS) approach on estuary scale was complemented with a mechanistic variance partitioning approach on sample scale to disentangle effects of factors affecting assembly of three trait groups of species with different dispersivity. A quasi-Clementsian pattern was observed for all three traits, a likely response to some latent gradient. The primary axis in the pattern was most strongly related to gradients in estuary salinity and estuary entrance width and correlation with richness indicated nestedness only in the matrix of the most dispersive trait group. In the variance partitioning approach measures of turnover and nestedness between paired samples each from different estuaries were related to environmental distance in different gradients. Distance between estuaries was unimportant suggesting importance of factors characterizing the estuaries. While the high dispersive species mainly were sorted in the salinity gradient, apparently according to their tolerance ranges towards salinity, the two less dispersive traits were additionally affected by estuary entrance width and possibly also area. The results exemplify a mechanism of community assembly in the marine realm where the niche factor salinity in conjunction with differential dispersal structure invertebrates in a metacommunity of connected estuaries, and support the idea that dispersive species are more controlled by the environment than less dispersive species.

Effects of mud supply on large-scale estuary morphology and development over centuries to millennia

NASA Astrophysics Data System (ADS)

Braat, Lisanne; van Kessel, Thijs; Leuven, Jasper R. F. W.; Kleinhans, Maarten G.

2017-10-01

Alluvial river estuaries consist largely of sand but are typically flanked by mudflats and salt marshes. The analogy with meandering rivers that are kept narrower than braided rivers by cohesive floodplain formation raises the question of how large-scale estuarine morphology and the late Holocene development of estuaries are affected by cohesive sediment. In this study we combine sand and mud transport processes and study their interaction effects on morphologically modelled estuaries on centennial to millennial timescales. The numerical modelling package Delft3D was applied in 2-DH starting from an idealised convergent estuary. The mixed sediment was modelled with an active layer and storage module with fluxes predicted by the Partheniades-Krone relations for mud and Engelund-Hansen for sand. The model was subjected to a range of idealised boundary conditions of tidal range, river discharge, waves and mud input. The model results show that mud is predominantly stored in mudflats on the side of the estuary. Marine mud supply only influences the mouth of the estuary, whereas fluvial mud is distributed along the whole estuary. Coastal waves stir up mud and remove the tendency to form muddy coastlines and the formation of mudflats in the downstream part of the estuary. Widening continues in estuaries with only sand, while mud supply leads to a narrower constant width and reduced channel and bar dynamics. This self-confinement eventually leads to a dynamic equilibrium in which lateral channel migration and mudflat expansion are balanced on average. However, for higher mud concentrations, higher discharge and low tidal amplitude, the estuary narrows and fills to become a tidal delta.

The relative influence of local and regional environmental drivers of algal biomass (chlorophyll-a) varies by estuarine location

NASA Astrophysics Data System (ADS)

Wainger, Lisa; Yu, Hao; Gazenski, Kim; Boynton, Walter

2016-09-01

A major question in restoring estuarine water quality is whether local actions to manage excess nutrients can be effective, given that estuaries are also responding to tidal inputs from adjacent water bodies. Several types of statistical analysis were used to examine spatially-detailed and long-term water quality monitoring data in eight sub-estuaries of Chesapeake Bay. These sub-estuaries are likely to be similar to other shallow systems with moderate to long water residence times. Statistical cluster analysis of spatial water quality data suggested that estuaries had spatially distinct water quality zones and that the peak algal biomass (as measured by chlorophyll-a) was most often controlled by local watershed inputs in all but one estuary, although mainstem inputs affected most estuaries at some times and places. An elasticity indicator that compared inter-annual changes in sub-estuaries to parallel changes in the mainstem Chesapeake Bay supported the idea that water quality in sub-estuaries was not strongly coupled to the mainstem. A cross-channel zonation of water quality observed near the mouth of estuaries suggested that Bay influences were stronger on the right side of the lower channel (looking up estuary) at times in all estuaries, and was most common in small estuaries closest to the mouth of the primary water source to the estuary. Where Bay influences were strong, estuarine water quality would be expected to be less responsive to nutrient reductions made in the local watershed. Regression analysis was used to evaluate hypothesized relationships between environmental driver variables and average chlorophyll-a (chl-a) concentrations. Chl-a values were calculated from unusually detailed levels of spatial sampling, potentially providing a more comprehensive view of system conditions than that provided by traditional sparse sampling networks. The univariate models with the best data support to explain variability in averaged chl-a concentration were those that reflected water residence time. Of the land cover variables tested, septic density in the riparian zone explained the most variance in chl-a. The multivariate models that most improved upon the residence time effect added TN or TP flows (normalized by volume) and suggested that chl-a will be less responsive to nutrient reductions in estuaries that are poorly flushed.

Spatial distribution of living (Rose Bengal stained) benthic foraminifera in the Loire estuary (western France)

NASA Astrophysics Data System (ADS)

Mojtahid, M.; Geslin, E.; Coynel, A.; Gorse, L.; Vella, C.; Davranche, A.; Zozzolo, L.; Blanchet, L.; Bénéteau, E.; Maillet, G.

2016-12-01

Ninety-seven surface sediment samples were collected in September 2012 from intertidal and subtidal areas along the Loire estuary (western France). The main objective of this work is to study the spatial distributional patterns of living benthic foraminifera and their link to the environmental parameters (distance to sea, elevation, grain size, total organic carbon, trace metals, sedimentary carbonates, and polycyclic aromatic hydrocarbons) in the Loire estuary. Foraminiferal analysis was also extended to the dead assemblages in thirty-three surface samples from the lower inner estuary. The highest absolute densities of living benthic foraminifera are found in the lower inner estuary within the polyhaline domain. This is attributed to the presence of mudflats with abundant food source, i.e. microphytobenthos. The low densities found in the outer estuary (euhaline domain) are attributed partly to the sandy nature of the sediments and the food source inhabiting this substrate. The near absence of foraminifera in the inner estuary (mesohaline and polyhaline domains) is inferred to the physical disturbance resulting from the regular dredging of the navigation channel. The living assemblages are dominated by three typical estuarine species: Ammonia tepida and Haynesina germanica in the intertidal mudflats of the lower inner estuary and Cribroelphidium excavatum in the sandy subtidal sediments of the lower inner and outer estuary. In the Loire estuary, H. germanica has an unusual intermediate geographical distribution along the estuary between A. tepida and C. excavatum while in most temperate estuaries this species is present upstream in the mesohaline domain. This is most likely the result of the regular dredging of the navigation channel damaging its natural habitat. This might be also the explanation for the total absence of agglutinated species usually dominating the oligohaline domain. The canonical correspondence analysis shows that elevation (and its link to time of emersion), distance to sea (and its correspondence with salinity), and organic carbon content appear to be the primary drivers of foraminiferal distribution. The present study provides for the first time ecological and distribution patterns of living benthic foraminiferal communities in the Loire estuary. This baseline knowledge is necessary for the future studies focusing on the use of benthic foraminifera as bio-indicators in the Loire estuary and in transitional environments in general.

Spatio-temporal distribution and environmental risk of sedimentary heavy metals in the Yangtze River Estuary and its adjacent areas.

PubMed

Chen, Bin; Liu, Jian; Qiu, Jiandong; Zhang, Xilin; Wang, Shuang; Liu, Jinqing

2017-03-15

Twenty-five surface sediments and one sediment core sample were collected from the study area. Grain size, major elements, and heavy metals were determined. The content of fine-grained sediments (silt and clay), as well as the concentrations of major elements and heavy metals, showed seaward decreasing trends, with high content in the coastal areas of the East China Sea (ECS) and south west of Jeju Island. Low enrichment factor (EF) and geoaccumulation index (Igeo) values were found, indicating that the ecological risk of heavy metals was low. The EF values obtained from the high-resolution sedimentary records of heavy metals in the Yangtze River Estuary could be divided into Stage 1 (1950s to the late 1970s) and Stage 2 (late 1970s to the current sampling day), which coincided with economic development of the Yangtze River Basin, implementation of environmental protection, and impoundment of the Three Gorges Dam. Copyright © 2016. Published by Elsevier Ltd.

The dependence of estuarine turbidity on tidal intrusion length, tidal range and residence time

USGS Publications Warehouse

Uncles, R.J.; Stephens, J.A.; Smith, R.E.

2002-01-01

It is shown that there is a marked tendency for long, strongly tidal estuaries to have greater suspended particulate matter (SPM) concentrations within their high-turbidity regions than shorter estuaries with comparable tidal ranges at their mouths, or weakly tidal estuaries. Using consistently derived data from 44 estuaries in Europe and the Americas, contours of the logarithm of maximum estuarine SPM concentration are shown to be reasonably smooth when plotted against the logarithm of mean spring tidal range (at the estuary mouth) and the logarithm of estuarine tidal length. Predictions from the plot are compared with published observations made in the Delaware, Scheldt, Rio de la Plata, Gironde, Bay of Fundy, Changjiang (Yangtze), Amazon, Paros Lagoon and the Hawkesbury Estuary and it is shown that, qualitatively, there are no serious discrepancies. Short, weakly tidal estuaries are predicted to have very low 'intrinsic' SPM concentrations. High SPM concentrations in these estuaries would most likely be the result of either locally generated wave resuspension, high freshwater sediment loads due to freshets, or intruding seawater carrying suspended sediments derived from wave activity in the coastal zone. Application of a generic tidal model demonstrates that longer estuaries possess faster tidal currents for a given tidal range at their mouth and, in the presence of a supply of erodable fine sediment, therefore (by implication) produce greater concentrations of SPM that can be accumulated within a turbidity maximum. The same is true if the tidal range is increased for estuaries of a given length. These features are illustrated by comparing surveys of SPM data from two large estuaries possessing greatly different tidal ranges (the microtidal, medium turbidity Potomac and the macrotidal, highly turbid Humber-Ouse) and a third, much smaller but strongly tidal estuary (the low-turbidity Tweed). It is demonstrated that longer estuaries tend to have longer flushing times for solutes than shorter systems and that larger tides tend to reduce flushing times, although the tidal influence is secondary. Short, rapidly flushed estuaries quickly lose their erodable fine sediment to the coastal zone during freshets and during the ebbing currents of spring tides. Turbidity is therefore small during low runoff, low wave activity conditions. Very long, very slowly flushed estuaries are unlikely to lose a significant fraction of their resuspended sediments during freshets or individual ebb tides and are therefore able to accumulate large and increasing amounts of fine sediment in the long-term. Turbidity within them is therefore high during the fast currents of large spring tides. ?? 2002 Elsevier Science Ltd. All rights reserved.

The dependence of estuarine turbidity on tidal intrusion length, tidal range and residence time

USGS Publications Warehouse

Uncles, R.J.; Stephens, J.A.; Smith, R.E.

2002-01-01

It is shown that there is a marked tendency for long, strongly tidal estuaries to have greater suspended particulate matter (SPM) concentrations within their high-turbidity regions than shorter estuaries with comparable tidal ranges at their mouths, or weakly tidal estuaries. Using consistently derived data from 44 estuaries in Europe and the Americas, contours of the logarithm of maximum estuarine SPM concentration are shown to be reasonably smooth when plotted against the logarithm of mean spring tidal range (at the estuary mouth) and the logarithm of estuarine tidal length. Predictions from the plot are compared with published observations made in the Delaware, Scheldt, Rio de la Plata, Gironde, Bay of Fundy, Changjiang (Yangtze), Amazon, Patos Lagoon and the Hawkesbury Estuary and it is shown that, qualitatively, there are no serious discrepancies. Short, weakly tidal estuaries are predicted to have very low ‘intrinsic’ SPM concentrations. High SPM concentrations in these estuaries would most likely be the result of either locally generated wave resuspension, high freshwater sediment loads due to freshets, or intruding seawater carrying suspended sediments derived from wave activity in the coastal zone. Application of a generic tidal model demonstrates that longer estuaries possess faster tidal currents for a given tidal range at their mouth and, in the presence of a supply of erodable fine sediment, therefore (by implication) produce greater concentrations of SPM that can be accumulated within a turbidity maximum. The same is true if the tidal range is increased for estuaries of a given length. These features are illustrated by comparing surveys of SPM data from two large estuaries possessing greatly different tidal ranges (the microtidal, medium turbidity Potomac and the macrotidal, highly turbid Humber-Ouse) and a third, much smaller but strongly tidal estuary (the low-turbidity Tweed). It is demonstrated that longer estuaries tend to have longer flushing times for solutes than shorter systems and that larger tides tend to reduce flushing times, although the tidal influence is secondary. Short, rapidly flushed estuaries quickly lose their erodable fine sediment to the coastal zone during freshets and during the ebbing currents of spring tides. Turbidity is therefore small during low runoff, low wave activity conditions. Very long, very slowly flushed estuaries are unlikely to lose a significant fraction of their resuspended sediments during freshets or individual ebb tides and are therefore able to accumulate large and increasing amounts of fine sediment in the long-term. Turbidity within them is therefore high during the fast currents of large spring tides.

DOE Office of Scientific and Technical Information (OSTI.GOV)

Bottom, Daniel L.; Simenstad, Charles A.; Campbell, Lance

In 2002 with support from the U.S. Army Corps of Engineers (USACE), an interagency research team began investigating salmon life histories and habitat use in the lower Columbia River estuary to fill significant data gaps about the estuary's potential role in salmon decline and recovery . The Bonneville Power Administration (BPA) provided additional funding in 2004 to reconstruct historical changes in estuarine habitat opportunities and food web linkages of Columbia River salmon (Onchorhynchus spp.). Together these studies constitute the estuary's first comprehensive investigation of shallow-water habitats, including selected emergent, forested, and scrub-shrub wetlands. Among other findings, this research documented themore » importance of wetlands as nursery areas for juvenile salmon; quantified historical changes in the amounts and distributions of diverse habitat types in the lower estuary; documented estuarine residence times, ranging from weeks to months for many juvenile Chinook salmon (O. tshawytscha); and provided new evidence that contemporary salmonid food webs are supported disproportionately by wetland-derived prey resources. The results of these lower-estuary investigations also raised many new questions about habitat functions, historical habitat distributions, and salmon life histories in other areas of the Columbia River estuary that have not been adequately investigated. For example, quantitative estimates of historical habitat changes are available only for the lower 75 km of the estuary, although tidal influence extends 217 km upriver to Bonneville Dam. Because the otolith techniques used to reconstruct salmon life histories rely on detection of a chemical signature (strontium) for salt water, the estuarine residency information we have collected to date applies only to the lower 30 or 35 km of the estuary, where fish first encounter ocean water. We lack information about salmon habitat use, life histories, and growth within the long tidal-fresh reaches of the main-stem river and many tidally-influenced estuary tributaries. Finally, our surveys to date characterize wetland habitats within island complexes distributed in the main channel of the lower estuary. Yet some of the most significant wetland losses have occurred along the estuary's periphery, including shoreline areas and tributary junctions. These habitats may or may not function similarly as the island complexes that we have surveyed to date. In 2007 we initiated a second phase of the BPA estuary study (Phase II) to address specific uncertainties about salmon in tidal-fresh and tributary habitats of the Columbia River estuary. This report summarizes 2007 and 2008 Phase II results and addresses three principal research questions: (1) What was the historic distribution of estuarine and floodplain habitats from Astoria to Bonneville Dam? (2) Do individual patterns of estuarine residency and growth of juvenile Chinook salmon vary among wetland habitat types along the estuarine tidal gradient? (3) Are salmon rearing opportunities and life histories in the restoring wetland landscape of lower Grays River similar to those documented for island complexes of the main-stem estuary? Phase II extended our analysis of historical habitat distribution in the estuary above Rkm 75 to near Bonneville Dam. For this analysis we digitized the original nineteenth-century topographic (T-sheets) and hydrographic (H-sheets) survey maps for the entire estuary. Although all T-sheets (Rkm 0 to Rkm 206) were converted to GIS in 2005 with support for the USACE estuary project, final reconstruction of historical habitats throughout the estuary requires completion of the remaining H-sheet GIS maps above Rkm 75 and their integration with the T-sheets. This report summarizes progress to date on compiling the upper estuary H-sheets above Rkm 75. For the USACE estuary project, we analyzed otoliths from Chinook salmon collected near the estuary mouth in 2003-05 to estimate variability in estuary residence times among juvenile out migrants. In Phase II we expanded these analyses to compare growth and residency among individuals collected in tidal-fresh water wetlands of the lower main-stem estuary. Although no known otolith structural or chemical indicators currently exist to define entry into tidal fresh environments, our previous analyses indicate that otolith barium concentrations frequently increase before individuals encounter salt water. Here we evaluate whether otolith barium levels may provide a valid indicator of tidal fresh water entry by Columbia River Chinook salmon. We also examine otolith growth increments to quantify and compare recent (i.e., the previous 30 d) growth rates among individuals sampled in different wetland habitats along the estuarine tidal gradient.« less

76 FR 70480 - Otay River Estuary Restoration Project, South San Diego Bay Unit of the San Diego Bay National...

Federal Register 2010, 2011, 2012, 2013, 2014

2011-11-14

... River Estuary Restoration Project, South San Diego Bay Unit of the San Diego Bay National Wildlife...), intend to prepare an environmental impact statement (EIS) for the proposed Otay River Estuary Restoration... any one of the following methods. Email: [email protected] . Please include ``Otay Estuary NOI'' in the...

78 FR 68995 - Safety Zone: Vessel Removal From the Oakland Estuary, Alameda, CA

Federal Register 2010, 2011, 2012, 2013, 2014

2013-11-18

...-AA00 Safety Zone: Vessel Removal From the Oakland Estuary, Alameda, CA AGENCY: Coast Guard, DHS. ACTION... waters of the Oakland Estuary just north of the Park Street Bridge in Alameda, CA in support of the Oakland Estuary Closure for the Vessel Removal Project on November 4, 2013 through November 22, 2013. This...

Measuring the contribution of benthic ecosystem engineering species to the ecosystem services of an estuary: A case study of burrowing shrimps in Yaquina Estuary, Oregon

EPA Science Inventory

Burrowing shrimps are regarded as ecosystem engineering species in many coastal ecosystems worldwide, including numerous estuaries of the west coast of North America (Baja California to British Columbia). In estuaries of the U.S. Pacific Northwest, two species of large burrowing...

Climate Ready Estuaries

EPA Pesticide Factsheets

Information on climate change impacts to different estuary regions, tools and resources to monitor changes, and information to help managers develop adaptation plans for risk management of estuaries and coastal communities.

Characterizing seston in the Penobscot River Estuary.

PubMed

Meseck, Shannon L; Li, Yaqin; Sunila, Inke; Dixon, Mark; Clark, Paul; Lipsky, Christine; Stevens, Justin R; Music, Paul; Wikfors, Gary H

2017-10-01

The Penobscot River Estuary is an important system for diadromous fish in the Northeast United States of American (USA), in part because it is home to the largest remnant population of Atlantic salmon, Salmo salar, in the country. Little is known about the chemical and biological characteristics of seston in the Penobscot River Estuary. This study used estuarine transects to characterize the seston during the spring when river discharge is high and diadromous fish migration peaks in the Penobscot River Estuary. To characterize the seston, samples were taken in spring 2015 for phytoplankton identification, total suspended matter (TSM), percent organic TSM, chlorophyll a, particle size (2 μm-180 μm), particulate carbon and nitrogen concentrations, and stable carbon and nitrogen isotopes. The estuarine profiles indicate that TSM behaved non-conservatively with a net gain in the estuary. As phytoplankton constituted only 1/1000 of the particles, the non-conservative behavior of TSM observed in the estuary was most likely not attributable to phytoplankton. Particulate carbon and nitrogen ratios and stable isotope signals indicate a strong terrestrial, allochthonous signal. The seston in the Penobscot River Estuary was dominated by non-detrital particles. During a short, two-week time period, Heterosigma akashiwo, a phytoplankton species toxic to finfish, also was detected in the estuary. A limited number of fish samples, taken after the 2015 Penobscot River Estuary bloom of H. akashiwo, indicated frequent pathological gill damage. The composition of seston, along with ichthyotoxic algae, suggest the need for further research into possible effects upon resident and migratory fish in the Penobscot River Estuary. Published by Elsevier Ltd.

Circulation and physical processes within the San Gabriel River Estuary during summer 2005

USGS Publications Warehouse

Rosenberger, Kurt J.; Xu, Jingping; Stein, Eric D.; Noble, Marlene A.; Gartner, Anne L.

2007-01-01

The Southern California Coastal Water Research Project (SCCWRP) is developing a hydrodynamic model of the SGR estuary, which is part of the comprehensive water-quality model of the SGR estuary and watershed investigated by SCCWRP and other local agencies. The hydrodynamic model will help understanding of 1) the exchange processes between the estuary and coastal ocean; 2) the circulation patterns in the estuary; 3) upstream natural runoff and the cooling discharge from PGS. Like all models, the SGR hydrodynamic model is only useful after it is fully calibrated and validated. In May 2005, SCCWRP requested the assistance of the U.S. geological Survey (USGS) Coastal and Marine Geology team (CMG) in collecting data on the hydrodynamic conditions in the estuary during the summer dry season. The summer was chosen for field data collection as this was assumed to be the season with the greatest potential for chronic degraded water quality due to low river flow and high thermal stratification within the estuary (due to both higher average air temperature and PGS output). Water quality can be degraded in winter as well, when higher river discharge events bring large volumes of water from the Los Angeles basin into the estuary. The objectives of this project were to 1) collect hydrodynamic data along the SGR estuary; 2) study exchange processes within the estuary through analysis of the hydrodynamic data; and 3) provide field data for model calibration and validation. As the data only exist for the summer season, the results herein only apply to summer conditions.

Evaluating Aquatic Life Benefits of Reducing Nutrient Loading ...

EPA Pesticide Factsheets

Theoretical linkages between excess nutrient loading, nutrient-enhanced community metabolism (i.e., production and respiration), and hypoxia in estuaries are well-understood. In seasonally-stratified estuaries and coastal systems (e.g., Chesapeake Bay, northern Gulf of Mexico), hypoxia is predominantly seasonal, such that the spatial extent indicates potential aquatic life impacts. However, in relatively small and shallow Gulf of Mexico bays and bayous, hypoxia frequently occurs episodically or on a diel basis. This study utilized continuous DO monitoring and 3-D hydrodynamic (Environmental Fluid Dynamics Code) and water quality (Water Quality Analysis Simulation Program) models to examine physical and biological controls on DO dynamics and ecosystem metabolism in Weeks Bay, AL. Observed vertical DO gradients varied on a diel basis, with larger amplitude variations at depth relative to the surface, underscoring the importance of benthic production and respiration as a driver of ecosystem metabolism in shallow estuaries. Hydrodynamic and water quality models simulated seasonal and event-driven dynamics, but struggled to resolve the amplitude of daily DO fluctuations, particularly in bottom waters. Using these data in conjunction with the 10-year continuous O2 record from Weeks Bay, we applied empirical relationships and simple scaling relations to predict how reducing nutrient loading may affect the frequency, severity and duration of hypoxia. We further applied

DOE Office of Scientific and Technical Information (OSTI.GOV)

Ke, Yinghai; Coleman, Andre M.; Diefenderfer, Heida L.

We delineated 8 watersheds contributing to previously defined river reaches within the 1,468-km2 historical floodplain of the tidally influenced lower Columbia River and estuary. We assessed land-cover change at the watershed, reach, and restoration site scales by reclassifying remote-sensing data from the National Oceanic and Atmospheric Administration Coastal Change Analysis Program’s land cover/land change product into forest, wetland, and urban categories. The analysis showed a 198.3 km2 loss of forest cover during the first 6 years of the Columbia Estuary Ecosystem Restoration Program, 2001–2006. Total measured urbanization in the contributing watersheds of the estuary during the full 1996-2006 change analysismore » period was 48.4 km2. Trends in forest gain/loss and urbanization differed between watersheds. Wetland gains and losses were within the margin of error of the satellite imagery analysis. No significant land cover change was measured at restoration sites, although it was visible in aerial imagery, therefore, the 30-m land-cover product may not be appropriate for assessment of early-stage wetland restoration. These findings suggest that floodplain restoration sites in reaches downstream of watersheds with decreasing forest cover will be subject to increased sediment loads, and those downstream of urbanization will experience effects of increased impervious surfaces on hydrologic processes.« less

Do different degrees of human activity affect the diet of Brazilian silverside Atherinella brasiliensis?

PubMed

Alves, V E N; Patrício, J; Dolbeth, M; Pessanha, A; Palma, A R T; Dantas, E W; Vendel, A L

2016-08-01

The aim of the present study was to test whether different degrees of human activity affect the diet of the Brazilian silverside Atherinella brasiliensis in two tropical estuaries. Fish were collected along the salinity gradient of two Brazilian estuaries, the heavily impacted Paraiba Estuary and the less impacted Mamanguape Estuary, in the dry and wet seasons. The findings confirm that A. brasiliensis has generalist feeding habits and is able to change its diet under different environmental conditions. The results indicate clear spatial (i.e. along the estuarine gradient) changes in diet composition in both estuaries, but diet was also influenced by the degree of anthropogenic disturbance. During the wet season in the nutrient enriched Paraiba Estuary, when human activity was higher, the diet of A. brasiliensis was poorer and dominated by few dietary items, reflecting the potential impoverishment of prey items in this heavily disturbed system. The specimens collected in the most affected estuary also had a greater frequency of micro-plastics and parasites in their stomachs, reflecting the greater degree of human disturbance in the estuary. The present findings suggest that the diet of A. brasiliensis could be a useful indicator of changes in the ecological quality of these and other tropical estuaries of the western Atlantic Ocean. © 2016 The Fisheries Society of the British Isles.

Isolation and connectivity: Relationships between periodic connection to the ocean and environmental variables in intermittently closed estuaries

NASA Astrophysics Data System (ADS)

Lill, Adrian Wilfred Thomas; Schallenberg, Marc; Lal, Aparna; Savage, Candida; Closs, Gerard Patrick

2013-08-01

Morphometric and physicochemical variables are key determinants of biotic community structure in estuaries and are influenced by changes to estuary mouth state (open/closed). This study examined and compared the consequences of intermittent connection to the ocean on environmental gradients among estuaries; specifically, how estuary morphology and hydrology relate to physical connection to the sea, and the influence of this relationship on the physicochemical environment. By sampling 20 estuaries across New Zealand and using historical aerial photographs, a continuous index of estuarine connection to the ocean was developed and independently validated using berm elevation derived from Airborne Laser Scanning (ALS) data. Using published literature, this index was compared to equivalent indices in South Africa and Australia. A clear relationship between connections to the ocean, freshwater flow and productivity indices underlie the environmental differences between permanently open and intermittently closed estuaries. Consistent patterns across the Southern Hemisphere, albeit with regional variations in estuarine characteristics, suggest that remote sensing is useful for predicting the physicochemical environment of small estuaries across regions. Principal components analysis for Otago estuaries showed that 40% of measured variation in the environment could be attributed to the gradient of relative connectivity (EOI), or isolation (berm elevation) to the ocean. Evaluating these relationships is central to understanding how global and local environmental changes may affect estuarine connectivity regimes and, ultimately, the functioning of estuarine ecosystems.

Simple processes drive unpredictable differences in estuarine fish assemblages: Baselines for understanding site-specific ecological and anthropogenic impacts

NASA Astrophysics Data System (ADS)

Sheaves, Marcus

2016-03-01

Predicting patterns of abundance and composition of biotic assemblages is essential to our understanding of key ecological processes, and our ability to monitor, evaluate and manage assemblages and ecosystems. Fish assemblages often vary from estuary to estuary in apparently unpredictable ways, making it challenging to develop a general understanding of the processes that determine assemblage composition. This makes it problematic to transfer understanding from one estuary situation to another and therefore difficult to assemble effective management plans or to assess the impacts of natural and anthropogenic disturbance. Although system-to-system variability is a common property of ecological systems, rather than being random it is the product of complex interactions of multiple causes and effects at a variety of spatial and temporal scales. I investigate the drivers of differences in estuary fish assemblages, to develop a simple model explaining the diversity and complexity of observed estuary-to-estuary differences, and explore its implications for management and conservation. The model attributes apparently unpredictable differences in fish assemblage composition from estuary to estuary to the interaction of species-specific, life history-specific and scale-specific processes. In explaining innate faunal differences among estuaries without the need to invoke complex ecological or anthropogenic drivers, the model provides a baseline against which the effects of additional natural and anthropogenic factors can be evaluated.

Evolution of mid-Atlantic coastal and back-barrier estuary environments in response to a hurricane: Implications for barrier-estuary connectivity

USGS Publications Warehouse

Miselis, Jennifer L.; Andrews, Brian D.; Nicholson, Robert S.; Defne, Zafer; Ganju, Neil K.; Navoy, Anthony S.

2016-01-01

Assessments of coupled barrier island-estuary storm response are rare. Hurricane Sandy made landfall during an investigation in Barnegat Bay-Little Egg Harbor estuary that included water quality monitoring, geomorphologic characterization, and numerical modeling; this provided an opportunity to characterize the storm response of the barrier island-estuary system. Barrier island morphologic response was characterized by significant changes in shoreline position, dune elevation, and beach volume; morphologic changes within the estuary were less dramatic with a net gain of only 200,000 m3 of sediment. When observed, estuarine deposition was adjacent to the back-barrier shoreline or collocated with maximum estuary depths. Estuarine sedimentologic changes correlated well with bed shear stresses derived from numerically simulated storm conditions, suggesting that change is linked to winnowing from elevated storm-related wave-current interactions rather than deposition. Rapid storm-related changes in estuarine water level, turbidity, and salinity were coincident with minima in island and estuarine widths, which may have influenced the location of two barrier island breaches. Barrier-estuary connectivity, or the transport of sediment from barrier island to estuary, was influenced by barrier island land use and width. Coupled assessments like this one provide critical information about storm-related coastal and estuarine sediment transport that may not be evident from investigations that consider only one component of the coastal system.

Learning Lessons from Estuaries

ERIC Educational Resources Information Center

Schnittka, Christine

2006-01-01

There is something that draws all people to the sea and especially to the fertile estuaries that nuzzle up to its shores. An estuary serves as both a nursery and a grave for sea creatures. If life evolved from some primordial sea, it may well have been an estuary--a place where ocean and rivers meet and fresh and salty waters mingle in the…

78 FR 1246 - Otay River Estuary Restoration Project; South San Diego Bay Unit and Sweetwater Marsh Unit of the...

Federal Register 2010, 2011, 2012, 2013, 2014

2013-01-08

...-FF08RSDC00] Otay River Estuary Restoration Project; South San Diego Bay Unit and Sweetwater Marsh Unit of the... scoping with regard to the environmental impact statement (EIS) for the proposed Otay River Estuary... one of the following methods. Email: [email protected] . Please include ``Otay Estuary NOI'' in the...

The Estuary Book: A Guide to Promoting Understanding and Regional Management of Maine's Estuaries and Embayments.

ERIC Educational Resources Information Center

Ruffing, Jenny

The objective of this document is to provide information about estuaries, the impact of uses on the environmental health of an estuary, and what communities and concerned individuals can do to manage and protect their local estuarine resources successfully. Much of the information presented here pertains to other embayments along the Maine coast…

Measuring the contribution of benthic ecosystem engineering species to the ecosystem services of an estuary: A case study of burrowing shrimps in Yaquina Estuary, Oregon - April 2009

EPA Science Inventory

Burrowing shrimps are regarded as ecosystem engineering species in many coastal ecosystems worldwide, including numerous estuaries of the west coast of North America (Baja California to British Columbia). In estuaries of the U.S. Pacific Northwest, two species of large burrowing...

Estuary Data Mapper: A Stand-Alone Tool for Geospatial Data Access, Visualization and Download for Estuaries and Coastal Watersheds of the United States

EPA Science Inventory

The US EPA Estuary Data Mapper (EDM; http://badger.epa.gov/rsig/edm/index.html) has been designed as a free stand-alone tool for geospatial data discovery, visualization, and data download for estuaries and their associated watersheds in the conterminous United States. EDM requi...

Estuary Data Mapper: A Stand-Alone Tool for Geospatial Data Access, Visualization and Download for Estuaries and Coastal Watersheds of the United States. (UNH)

EPA Science Inventory

The US EPA Estuary Data Mapper (EDM; http://badger.epa.gov/rsig/edm/index.html) has been designed as a free stand-alone tool for geospatial data discovery, visualization, and data download for estuaries and their associated watersheds in the conterminous United States. EDM requi...

Utilising monitoring and modelling of estuarine environments to investigate catchment conditions responsible for stratification events in a typically well-mixed urbanised estuary

NASA Astrophysics Data System (ADS)

Lee, Serena B.; Birch, Gavin F.

2012-10-01

Estuarine health is affected by contamination from stormwater, particularly in highly-urbanised environments. For systems where catchment monitoring is insufficient, novel techniques must be employed to determine the impact of urban runoff on receiving water bodies. In the present work, estuarine monitoring and modelling were successfully employed to determine stormwater runoff volumes and establish an appropriate rainfall/runoff relationship capable of replicating fresh-water discharge due to the full range of precipitation conditions in the Sydney Estuary, Australia. Using estuary response to determine relationships between catchment rainfall and runoff is a widely applicable method and may be of assistance in the study of waterways where monitoring fluvial discharges is not practical or is beyond the capacity of management authorities. For the Sydney Estuary, the SCS-CN method replicated rainfall/runoff and was applied in numerical modelling experiments investigating the hydrodynamic characteristics affecting stratification and estuary recovery following high precipitation. Numerical modelling showed stratification in the Sydney Estuary was dominated by fresh-water discharge. Spring tides and up-estuary winds contributed to mixing and neap tides and down-estuary winds enhanced stratification.

Analysis of Salinity Intrusion in the San Francisco Bay-Delta Using a GA-Optimized Neural Net, and Application of the Model to Prediction in the Elkhorn Slough Habitat

NASA Astrophysics Data System (ADS)

Thompson, D. E.; Rajkumar, T.

2002-12-01

The San Francisco Bay Delta is a large hydrodynamic complex that incorporates the Sacramento and San Joaquin Estuaries, the Suisan Marsh, and the San Francisco Bay proper. Competition exists for the use of this extensive water system both from the fisheries industry, the agricultural industry, and from the marine and estuarine animal species within the Delta. As tidal fluctuations occur, more saline water pushes upstream allowing fish to migrate beyond the Suisan Marsh for breeding and habitat occupation. However, the agriculture industry does not want extensive salinity intrusion to impact water quality for human and plant consumption. The balance is regulated by pumping stations located along the estuaries and reservoirs whereby flushing of fresh water keeps the saline intrusion at bay. The pumping schedule is driven by data collected at various locations within the Bay Delta and by numerical models that predict the salinity intrusion as part of a larger model of the system. The Interagency Ecological Program (IEP) for the San Francisco Bay / Sacramento-San Joaquin Estuary collects, monitors, and archives the data, and the Department of Water Resources provides a numerical model simulation (DSM2) from which predictions are made that drive the pumping schedule. A problem with DSM2 is that the numerical simulation takes roughly 16 hours to complete a prediction. We have created a neural net, optimized with a genetic algorithm, that takes as input the archived data from multiple gauging stations and predicts stage, salinity, and flow at the Carquinez Straits (at the downstream end of the Suisan Marsh). This model seems to be robust in its predictions and operates much faster than the current numerical DSM2 model. Because the Bay-Delta is strongly tidally driven, we used both Principal Component Analysis and Fast Fourier Transforms to discover dominant features within the IEP data. We then filtered out the dominant tidal forcing to discover non-primary tidal effects, and used this to enhance the neural network by mapping input-output relationships in a more efficient manner. Furthermore, the neural network implicitly incorporates both the hydrodynamic and water quality models into a single predictive system. Although our model has not yet been enhanced to demonstrate improve pumping schedules, it has the possibility to support better decision-making procedures that may then be implemented by State agencies if desired. Our intention is now to use our calibrated Bay-Delta neural model in the smaller Elkhorn Slough complex near Monterey Bay where no such hydrodynamic model currently exists. At the Elkhorn Slough, we are fusing the neural net model of tidally-driven flow with in situ flow data and airborne and satellite remote sensing data. These further constrain the behavior of the model in predicting the longer-term health and future of this vital estuary. In particular, we are using visible data to explore the effects of the sediment plume that wastes into Monterey Bay, and infrared data and thermal emissivities to characterize the plant habitat along the margins of the Slough as salinity intrusion and sediment removal change the boundary of the estuary. The details of the Bay-Delta neural net model and its application to the Elkhorn Slough are presented in this paper.

Functional diversity of fish communities in two tropical estuaries subjected to anthropogenic disturbance.

PubMed

Dolbeth, M; Vendel, A L; Pessanha, A; Patrício, J

2016-11-15

The functional diversity of fish communities was studied along the salinity gradient of two estuaries in Northeast Brazil subjected to different anthropogenic pressures, to gain a better understanding of the response of fish communities to disturbance. We evaluated functional complementarity indices, redundancy and analysed functional composition through functional groups based on combinations of different traits. The fish communities in both estuaries share similar functions performed by few functional groups. The upstream areas had generally lower taxonomic, functional diversity and lower redundancy, suggesting greater vulnerability to impacts caused by human activities. Biomass was slightly more evenly distributed among functional groups in the less disturbed estuary, but total biomass and redundancy were lower in comparison to the urbanized estuary. The present findings lend strength to the notion that the less disturbed estuary may be more susceptible to anthropogenic impacts, underscoring the need for more effective conservation measures directed at this estuary. Copyright © 2016 Elsevier Ltd. All rights reserved.

How Phytoplankton Membranes Cope With Steep Ionic Strength (Salinity) Gradient?

NASA Astrophysics Data System (ADS)

Gasparovic, B.; Sesar, T.; Cankovic, M.; Ljubešić, Z.; Hrustić, E.; Zhu, Z.; Zhang, R.; Du, J.

2016-02-01

We report on phytoplankton accommodation on stressful conditions being steep ionic strength, i.e. salinity, changes, the conditions regularly found in the estuaries. We aimed defining how lipid composition of phytoplankton membrane structure is accommodated to prevent spontaneous osmosis. Salinity-dependent lipid profiles for particulate lipid extracts from blooming periods of the two opposing estuaries: eutrophic and polluted Wenchang River Estuary and pristine oligotrophic/mesotrophic Krka River Estuary were characterized by thin layer chromatography (TLC). The composition of phytoplankton pigments which was analyzed by high performance liquid chromatography. Domination of pigment Fucoxanthin in both estuaries indicates diatoms were major blooming group. While total particulate lipid concentration was almost an order of magnitude higher in the Wenchang River estuary (on average 238 µg/L) than in the Krka River Estuary (on average 36 µg/L), the lipid composition was similar. This implies that salinity stress is the main influential factor on phytoplankton lipid composition rather than availability of nutrients. Details on the lipid composition that follow salinity changes will be discussed.

Plastic pollution in five urban estuaries of KwaZulu-Natal, South Africa.

PubMed

Naidoo, Trishan; Glassom, David; Smit, Albertus J

2015-12-15

Monitoring plastic concentrations in estuaries is vital in assessing the magnitude of terrestrial inputs to oceanic environments. Data on plastics ≤ 5 mm in estuaries are scant. This study determined microplastic levels within five estuaries along the Durban coastline and on intervening beaches. Plastics were isolated from estuarine sediment, beach sediment and the surface water of each estuary and characterised. Sediment at the Bayhead area of Durban harbour had the highest average plastic concentrations (745.4 ± 129.7 particles per 500 ml) and an attenuating concentration trend away from the city centre was found. Prevailing south to north longshore drift was hypothesised to result in plastic accumulation on the northern shores of beaches with estuarine effluents, however, this was not found. Fragments composed the largest percent of plastics (59%) found in Bayhead, whereas fibres dominated other estuaries with proportions ranging from 38% of total plastics in the uMgeni estuary to 66% in the Mdloti. Copyright © 2015 Elsevier Ltd. All rights reserved.

Estuary Data Mapper (EDM)

EPA Pesticide Factsheets

Estuary Data Mapper is a tool for geospatial data discovery, visualization, and data download for any of the approximately 2,000 estuaries and associated watersheds in along the five US coastal regions

Spatial and Temporal Comparison of DNRA Communities in New River Estuary, USA

NASA Astrophysics Data System (ADS)

Song, B.; Lisa, J.; Tobias, C. R.

2016-02-01

Dissimilatory nitrate reduction to ammonium (DNRA) is an important nitrate respiring pathway, competing with denitrification, in various ecosystems. Studies examining the diversity and composition of DNRA communities are limited and their link to DNRA activity is unknown. We conducted a multidisciplinary investigation of sediment communities in the upper reaches of a eutrophic estuary to examine spatial and temporal variation of DNRA community structures and determine their linkage to activities. Sediment samples were collected seasonally from two study sites (AA2 and JAX) in the New River Estuary, North Carolina, USA. 15N-nitrate tracer experiments were conducted to measure potential DNRA rates while abundance of DNRA communities was measured using quantitative PCR of cytochrome C nitrite reductase genes (nrfA). Composition and diversity of DNRA communities were also examined based on next generation sequencing (NGS) of nrfA genes using an Ion Torrent PGM. Bioinformatic analysis was conducted using the FunGene pipeline and Mothur program. Higher DNRA activities were measured at JAX and associated with higher abundance of nrfA genes. Seasonal variation in DNRA rates and nrfA gene abundance was more evident at JAX than AA2. Nitrate concentration and dissolved oxygen in bottom water were significantly and positively correlated with activities and abundance of DNRA communities. The nrfA NGS analysis revealed that spatial variation of DNRA communities was much greater than temporal variation with salinity, dissolved organic carbon, and nitrate as the most important environmental variables affecting these communities. Diversity of DNRA communities was negative correlated with the DNRA rates and nrfA gene abundance, which suggests that dominant members of the DNRA community are responsible for higher rates. Thus, our multidisciplinary study clearly demonstrates the linkage between structure and activities of DNRA communities in the upper reaches of New River Estuary.

About Estuary Data Mapper (EDM)

EPA Pesticide Factsheets

Estuary Data Mapper is a tool for geospatial data discovery, visualization, and data download for any of the approximately 2,000 estuaries and associated watersheds in along the five US coastal regions.

DOE Office of Scientific and Technical Information (OSTI.GOV)

Johnson, Gary E.; Borde, Amy B.; Dawley, Earl

This report is the third annual report of a six-year project to evaluate the cumulative effects of habitat restoration action in the Columbia River Estuary (CRE). The project is being conducted for the U.S. Army Corps of Engineers (Corps) by the Marine Sciences Laboratory of the Pacific Northwest National Laboratory, the Pt. Adams Biological Field Station of the National Marine Fisheries Service, and the Columbia River Estuary Study Taskforce. Measurement of the cumulative effects of ecological restoration projects in the Columbia River estuary is a formidable task because of the size and complexity of the estuarine landscape and the meta-populationsmore » of salmonids in the Columbia River basin. Despite the challenges presented by this system, developing and implementing appropriate indicators and methods to measure cumulative effects is the best way to enable estuary managers to track the overall effectiveness of investments in estuarine restoration projects. This project is developing methods to quantify the cumulative effects of multiple restoration activities in the CRE. The overall objectives of the 2006 study were to continue to develop techniques to assess cumulative effects, refine the standard monitoring protocols, and initiate development of an adaptive management system for Corps of Engineers’ habitat restoration monitoring efforts in the CRE. (The adaptive management effort will be reported at a later date.) Field studies during 2006 were conducted in tidal freshwater at Kandoll Farm on the lower Grays River and tidal brackish water at Vera Slough on Youngs Bay. Within each of area, we sampled one natural reference site and one restoration site. We addressed the overall objectives with field work in 2006 that, coupled with previous field data, had specific objectives and resulted in some important findings that are summarized here by chapter in this report. Each chapter of the report contains data on particular monitored variables for pre- and post-restoration conditions at both the Kandoll and Vera study areas.« less

DOE Office of Scientific and Technical Information (OSTI.GOV)

Khangaonkar, Tarang P.; Breithaupt, Stephen A.; Kristanovich, Felix C.

A hydrodynamic and hydrologic modeling analysis was conducted to evaluate the feasibility of restoring natural estuarine functions and tidal marine wetlands habitat in the Chinook River estuary, located near the mouth of the Columbia River in Washington. The reduction in salmonid populations is attributable primarily to the construction of a Highway 101 overpass across the mouth of the Chinook River in the early 1920s with a tide gate under the overpass. This construction, which was designed to eliminate tidal action in the estuary, has impeded the upstream passage of salmonids. The goal of the Chinook River Restoration Project is tomore » restore tidal functions through the estuary, by removing the tide gate at the mouth of the river, filling drainage ditches, restoring tidal swales, and reforesting riparian areas. The hydrologic model (HEC-HMS) was used to compute Chinook River and tributary inflows for use as input to the hydrodynamic model at the project area boundary. The hydrodynamic model (RMA-10) was used to generate information on water levels, velocities, salinity, and inundation during both normal tides and 100-year storm conditions under existing conditions and under the restoration alternatives. The RMA-10 model was extended well upstream of the normal tidal flats into the watershed domain to correctly simulate flooding and drainage with tidal effects included, using the wetting and drying schemes. The major conclusion of the hydrologic and hydrodynamic modeling study was that restoration of the tidal functions in the Chinook River estuary would be feasible through opening or removal of the tide gate. Implementation of the preferred alternative (removal of the tide gate, restoration of the channel under Hwy 101 to a 200-foot width, and construction of an internal levee inside the project area) would provide the required restorations benefits (inundation, habitat, velocities, and salinity penetration, etc.) and meet flood protection requirements. The alternative design included design of storage such that relatively little difference in the drainage or inundation upstream of Chinook River Valley Road would occur as a result of the proposed restoration activities.« less

DOE Office of Scientific and Technical Information (OSTI.GOV)

Khangaonkar, Tarang P.; Breithaupt, Stephen A.; Kristanovich, Felix C.

A hydrodynamic and hydrologic modeling analysis was conducted to evaluate the feasibility of restoring natural estuarine functions and tidal marine wetlands habitat in the Chinook River estuary, located near the mouth of the Columbia River in Washington. The reduction in salmonid populations is attributable primarily to the construction of a Highway 101 overpass across the mouth of the Chinook River in the early 1920s with a tide gate under the overpass. This construction, which was designed to eliminate tidal action in the estuary, has impeded the upstream passage of salmonids. The goal of the Chinook River Restoration Project is tomore » restore tidal functions through the estuary, by removing the tide gate at the mouth of the river, filling drainage ditches, restoring tidal swales, and reforesting riparian areas. The hydrologic model (HEC-HMS) was used to compute Chinook River and tributary inflows for use as input to the hydrodynamic model at the project area boundary. The hydrodynamic model (RMA-10) was used to generate information on water levels, velocities, salinity, and inundation during both normal tides and 100-year storm conditions under existing conditions and under the restoration alternatives. The RMA-10 model was extended well upstream of the normal tidal flats into the watershed domain to correctly simulate flooding anddrainage with tidal effects included, using the wetting and drying schemes. The major conclusion of the hydrologic and hydrodynamic modeling study was that restoration of the tidal functions in the Chinook River estuary would be feasible through opening or removal of the tide gate. Implementation of the preferred alternative (removal of the tide gate, restoration of the channel under Hwy 101 to a 200-foot width, and construction of an internal levee inside the project area) would provide the required restorations benefits (inundation, habitat, velocities, and salinity penetration, etc.) and meet flood protection requirements. The alternative design included design of storage such that relatively little difference in the drainage or inundation upstream of Chinook River Valley Road would occur as a result of the proposed restoration activities.« less

Country-wide assessment of estuary health: An approach for integrating pressures and ecosystem response in a data limited environment

NASA Astrophysics Data System (ADS)

Van Niekerk, L.; Adams, J. B.; Bate, G. C.; Forbes, A. T.; Forbes, N. T.; Huizinga, P.; Lamberth, S. J.; MacKay, C. F.; Petersen, C.; Taljaard, S.; Weerts, S. P.; Whitfield, A. K.; Wooldridge, T. H.

2013-09-01

Population and development pressures increase the need for proactive strategic management on a regional or country-wide scale - reactively protecting ecosystems on an estuary-by-estuary basis against multiple pressures is 'resource hungry' and not feasible. Proactive management requires a strategic assessment of health so that the most suitable return on investment can be made. A country-wide assessment of the nearly 300 functional South African estuaries examined both key pressures (freshwater inflow modification, water quality, artificial breaching of temporarily open/closed systems, habitat modification and exploitation of living resources) and health state. The method used to assess the type and level of the different pressures, as well as the ecological health status of a large number of estuaries in a data limited environment is described in this paper. Key pressures and the ecological condition of estuaries on a national scale are summarised. The template may also be used to provide guidance to coastal researchers attempting to inform management in other developing countries. The assessment was primarily aimed at decision makers both inside and outside the biodiversity sector. A key starting point was to delineate spatially the estuary functional zone (area) for every system. In addition, available data on pressures impacting estuaries on a national scale were collated. A desktop national health assessment, based on an Estuarine Health Index developed for South African ecological water requirement studies, was then applied systematically. National experts, all familiar with the index evaluated the estuaries in their region. Individual estuarine health assessment scores were then translated into health categories that reflect the overall status of South Africa's estuaries. The results showed that estuaries in the warm-temperate biogeographical zone are healthier than those in the cool-temperate and subtropical zones, largely reflecting the country's demographics and developmental pressures. A major finding was that, while a large number of South Africa's estuaries are still in an excellent to good condition, they tend to represent very small systems (<150 ha in size) in rural areas with few pressures. Larger systems, which are more important as nursery grounds because of their size, and also of higher economic and ecological importance, are in a fair to poor condition. This was due to pressures within the catchments influencing these downstream systems, and degradation as a result of direct development within the estuary functional zone.

Positive feedback fishery: Population consequences of `crab-tiling' on the green crab Carcinus maenas

NASA Astrophysics Data System (ADS)

Sheehan, E. V.; Thompson, R. C.; Coleman, R. A.; Attrill, M. J.

2008-11-01

Collection of marine invertebrates for use as fishing bait is a substantial activity in many parts of the world, often with unknown ecological consequences. As new fisheries develop, it is critical for environmental managers to have high quality ecological information regarding the potential impacts, in order to develop sound management strategies. Crab-tiling is a largely unregulated and un-researched fishery, which operates commercially in the south-west UK. The target species is the green crab Carcinus maenas. Those crabs which are pre-ecdysis and have a carapace width greater than 40 mm are collected to be sold to recreational anglers as bait. Collection involves laying artificial structures on intertidal sandflats and mudflats in estuaries. Crabs use these structures as refugia and are collected during low tide. However, the effect that this fishery has on populations of C. maenas is not known. The impact of crab-tiling on C. maenas population structure was determined by sampling crabs from tiled estuaries and non-tiled estuaries using baited drop-nets. A spatially and temporarily replicated, balanced design was used to compare crab abundance, sizes and sex ratios between estuaries. Typically, fisheries are associated with a reduction in the abundance of the target species. Crab-tiling, however, significantly increased C. maenas abundance. This was thought to be a result of the extra habitat in tiled estuaries, which probably provides protection from natural predators, such as birds and fish. Although crabs were more abundant in tiled estuaries than non-tiled estuaries, the overall percentage of reproductively active crabs in non-tiled estuaries was greater than in tiled estuaries. As with most exploited fisheries stocks, crabs in exploited (tiled) estuaries tended to be smaller, with a modal carapace width of 20-29 mm rather than 30-39 mm in non-tiled estuaries. The sex ratio of crabs however; was not significantly different between tiled and non-tiled estuaries. These results illustrate the potential to manage fished populations using habitat provision to mitigate the effects of fishing pressure.

Coastal Inlets Research Program

DTIC Science & Technology

2015-10-30

transport, and vessel-induced flow and wake. In FY 2014, the Corps spent approximately $808 million in maintenance dredging of 152 million cubic...yards from Federal navigation channels*. Dredging costs are likely to increase in the future because of increasing fuel, mobilization, and...channels and jetties can have a profound effect on the integrity of the navigation structures, adjacent beaches, estuaries, ecosystems and regions

Water Quality Monitoring of an Urban Estuary and a Coastal Aquifer Using Field Kits and Meters: A Community-Based Environmental Research Project

ERIC Educational Resources Information Center

Jung, Hun Bok; Zamora, Felix; Duzgoren-Aydin, Nurdan S.

2017-01-01

Water quality is an important interdisciplinary environmental topic for project-based learning. An undergraduate summer research internship program at a public minority serving institution engaged environmental science majors in community-based research experiences. The research focused on the field monitoring of water quality for surface water…

Species Sorting of Benthic Invertebrates in a Salinity Gradient – Importance of Dispersal Limitation

PubMed Central

Josefson, Alf B.

2016-01-01

The relative importance of environment and dispersal related processes for community assembly has attracted great interest over recent decades, but few empirical studies from the marine/estuarine realm have examined the possible effects of these two types of factors in the same system. Importance of these processes was investigated in a hypothetical metacommunity of benthic invertebrates in 16 micro-tidal estuaries connected to the same open sea area. The estuaries differed in size and connectivity to the open sea and represented a salinity gradient across the estuaries. The Elements of Metacommunity Structure (EMS) approach on estuary scale was complemented with a mechanistic variance partitioning approach on sample scale to disentangle effects of factors affecting assembly of three trait groups of species with different dispersivity. A quasi-Clementsian pattern was observed for all three traits, a likely response to some latent gradient. The primary axis in the pattern was most strongly related to gradients in estuary salinity and estuary entrance width and correlation with richness indicated nestedness only in the matrix of the most dispersive trait group. In the variance partitioning approach measures of turnover and nestedness between paired samples each from different estuaries were related to environmental distance in different gradients. Distance between estuaries was unimportant suggesting importance of factors characterizing the estuaries. While the high dispersive species mainly were sorted in the salinity gradient, apparently according to their tolerance ranges towards salinity, the two less dispersive traits were additionally affected by estuary entrance width and possibly also area. The results exemplify a mechanism of community assembly in the marine realm where the niche factor salinity in conjunction with differential dispersal structure invertebrates in a metacommunity of connected estuaries, and support the idea that dispersive species are more controlled by the environment than less dispersive species. PMID:28006014

Tropical land-sea couplings: Role of watershed deforestation, mangrove estuary processing, and marine inputs on N fluxes in coastal Pacific Panama.

PubMed

Valiela, Ivan; Elmstrom, Elizabeth; Lloret, Javier; Stone, Thomas; Camilli, Luis

2018-07-15

We review data from coastal Pacific Panama and other tropical coasts with two aims. First, we defined inputs and losses of nitrogen (N) mediating connectivity of watersheds, mangrove estuaries, and coastal sea. N entering watersheds-mainly via N fixation (79-86%)-was largely intercepted; N discharges to mangrove estuaries (3-6%), small compared to N inputs to watersheds, nonetheless significantly supplied N to mangrove estuaries. Inputs to mangrove estuaries (including watershed discharges, and marine inputs during flood tides) were matched by losses (mainly denitrification and export during ebb tides). Mangrove estuary subsidies of coastal marine food webs take place by export of forms of N [DON (62.5%), PN (9.1%), and litter N (12.9%)] that provide dissimilative and assimilative subsidies. N fixation, denitrification, and tidal exchanges were major processes, and DON was major form of N involved in connecting fluxes in and out of mangrove estuaries. Second, we assessed effects of watershed forest cover on connectivity. Decreased watershed forest cover lowered N inputs, interception, and discharge into receiving mangrove estuaries. These imprints of forest cover were erased during transit of N through estuaries, owing to internal N cycle transformations, and differences in relative area of watersheds and estuaries. Largest losses of N consisted of water transport of energy-rich compounds, particularly DON. N losses were similar in magnitude to N inputs from sea, calculated without considering contribution by intermittent coastal upwelling, and hence likely under-estimated. Pacific Panama mangrove estuaries are exposed to major inputs of N from land and sea, which emphasizes the high degree of bi-directional connectivity in these coupled ecosystems. Pacific Panama is still lightly affected by human or global changes. Increased deforestation can be expected, as well as changes in ENSO, which will surely raise watershed-derived loads of N, as well as significantly change marine N inputs affecting coastal coupled ecosystems. Copyright © 2018 Elsevier B.V. All rights reserved.

Sea level rise in the Severn Estuary and Bristol Channel and impacts of a Severn Barrage

NASA Astrophysics Data System (ADS)

Ahmadian, Reza; Olbert, Agnieszka I.; Hartnett, Michael; Falconer, Roger A.

2014-05-01

Many research projects in recent years have focused on marine renewable energy devices and structures due to the growing interest in marine renewable energy. These devices and structures have very different life spans. Schemes such as the Severn Barrage in the UK, as originally proposed by the Severn Tidal Power Group (STPG), would be the largest tidal renewable energy generation project in the world and would be operational for well over a century if built. Due to the long working life of some of these marine renewable energy schemes, it is important to study the impacts of climate change on such schemes, and particularly sea level rise. This study focuses on investigating the impacts of sea level rise due to climate change on the largest macro-tidal estuary in the UK, namely the Severn Estuary and Bristol Channel, and the alterations of the impacts and the performance of the Severn Barrage as a result of climate change. A hierarchy of computer models was implemented to identify the more localised impacts of climate change in the region of the study. Moreover, the potential benefits of the barrage on reducing flood risk, as well as the impact of climate change and the barrage on intertidal mudflats were investigated. The model predictions showed that the barrage would reduce flood risk due to the sea level rise. Furthermore, annual power output and the initial reduction in flood risk of the barrage would not be affected by sea level rise.

Downloading and Installing Estuary Data Mapper (EDM)

EPA Pesticide Factsheets

Estuary Data Mapper is a tool for geospatial data discovery, visualization, and data download for any of the approximately 2,000 estuaries and associated watersheds in along the five US coastal regions

Frequent Questions about Estuary Data Mapper (EDM)

EPA Pesticide Factsheets

Estuary Data Mapper is a tool for geospatial data discovery, visualization, and data download for any of the approximately 2,000 estuaries and associated watersheds in along the five US coastal regions

DOE Office of Scientific and Technical Information (OSTI.GOV)

U.S. Bonneville Power Administration

The 2008 Columbia River Estuary Conference was held at the Liberty Theater in Astoria, Oregon, on April 19-20. The conference theme was ecosystem restoration. The purpose of the conference was to exchange data and information among researchers, policy-makers, and the public, i.e., interrelate science with management. Conference organizers invited presentations synthesizing material on Restoration Planning and Implementation (Session 1), Research to Reduce Restoration Uncertainties (Session 2), Wetlands and Flood Management (Session 3), Action Effectiveness Monitoring (Session 4), and Management Perspectives (Session 5). A series of three plenary talks opened the conference. Facilitated speaker and audience discussion periods were held atmore » the end of each session. Contributed posters conveyed additional data and information. These proceedings include abstracts and notes documenting questions from the audience and clarifying answers from the presenter for each talk. The proceedings also document key points from the discussion periods at the end of each session. The conference program is outlined in the agenda section. Speaker biographies are presented in Appendix A. Poster titles and authors are listed in Appendix B. A list of conference attendees is contained in Appendix C.« less

Attitudes toward issues affecting Sarasota Bay

DOE Office of Scientific and Technical Information (OSTI.GOV)

Rayburn, J.D.; Heald, G.R.

1995-06-20

The Sarasota Bay National Estuary Program (SBNEP) contracted with the Communication Research Center (CRC) of the Florida State University to conduct a public opinion survey of residents of Sarasota and Manatee, Florida counties to ascertain residents` attitudes toward issues of interest to the SBNEP. The survey was conducted in the final year (1995) of the SBNEP planning phase to determine changes in the public`s perception of bay issues, awareness of restoration efforts, and as a comparison tool to the initial survey conducted in 1990. The survey also provided information necessary for development and implementation of the Comprehensive Conservation and Managementmore » Plan (CCMP). Five hundred, seventy-eight respondents, chosen at random, were interviewed by telephone during February 1995. The survey had a maximum estimated sampling error of approximately plus or minus four percent (4%) at the 95% level of confidence. Survey results include: just 41% of the respondents were aware of some type of clean up activities going on in the community. This information points to the need for continued assertive public education and outreach efforts to support Sarasota Bay restoration.« less

Bar dynamics and channel junctions in scale-experiments of estuaries

NASA Astrophysics Data System (ADS)

Leuven, J.; Braat, L.; van Dijk, W. M.; Haas, T. D.; Kleinhans, M. G.

2017-12-01

The evolution of channels and bars in estuaries has high socio-economic relevance, with strong implications for navigation, dredging and ecology. However, the spatial and temporal evolution of channels and bars in estuaries is poorly understood. Here, we study feedbacks of bar morphodynamics on widening and narrowing of estuaries. Therefore, we conducted an experiment in a 20 m long and 3 m wide tilting flume (the 'Metronome'), in which we monitored the evolution of a self-formed estuary that developed from an intial straight channel into an irregular planform with multiple channels, braided bars and a meandering ebb channel. At locations where the estuary width is confined, major channel junctions occur, while the zones between the junctions are characterised by high braiding indices, periodically migrating channels and a relatively large estuary width. The junction locations were forced by the in- and outflow locations on the sides of the ebb-tidal delta and at the location where the channel pattern transitions from multiple channels into a single channel. In the middle of the estuary, self-confinement occurred by sedimentation on the sides of the estuary, which caused another major junction. The channel orientation at the junctions steers the morphodynamics of channels and bars immediately landward and seaward, because the orientation of inflow from the ebb-tidal delta and landward river perpetually varies. In natural systems major junction locations are mostly forced by inherited geology or human engineering. However, this study concludes that even without external forcing, the estuary planform will not converge to an ideal shape but will self-confine at major junctions and widens in the adjacent zones, resulting in an irregular planform shape.

amoA Gene Abundances and Nitrification Potential Rates Suggest that Benthic Ammonia-Oxidizing Bacteria and Not Archaea Dominate N Cycling in the Colne Estuary, United Kingdom

PubMed Central

Li, Jialin; Nedwell, David B.; Beddow, Jessica; Dumbrell, Alex J.; McKew, Boyd A.; Thorpe, Emma L.

2014-01-01

Nitrification, mediated by ammonia-oxidizing bacteria (AOB) and ammonia-oxidizing archaea (AOA), is important in global nitrogen cycling. In estuaries where gradients of salinity and ammonia concentrations occur, there may be differential selections for ammonia-oxidizer populations. The aim of this study was to examine the activity, abundance, and diversity of AOA and AOB in surface oxic sediments of a highly nutrified estuary that exhibits gradients of salinity and ammonium. AOB and AOA communities were investigated by measuring ammonia monooxygenase (amoA) gene abundance and nitrification potentials both spatially and temporally. Nitrification potentials differed along the estuary and over time, with the greatest nitrification potentials occurring mid-estuary (8.2 μmol N grams dry weight [gdw]−1 day−1 in June, increasing to 37.4 μmol N gdw−1 day−1 in January). At the estuary head, the nitrification potential was 4.3 μmol N gdw−1 day−1 in June, increasing to 11.7 μmol N gdw−1 day−1 in January. At the estuary head and mouth, nitrification potentials fluctuated throughout the year. AOB amoA gene abundances were significantly greater (by 100-fold) than those of AOA both spatially and temporally. Nitrosomonas spp. were detected along the estuary by denaturing gradient gel electrophoresis (DGGE) band sequence analysis. In conclusion, AOB dominated over AOA in the estuarine sediments, with the ratio of AOB/AOA amoA gene abundance increasing from the upper (freshwater) to lower (marine) regions of the Colne estuary. These findings suggest that in this nutrified estuary, AOB (possibly Nitrosomonas spp.) were of major significance in nitrification. PMID:25326303

Spatial Abundance, Diversity, and Activity of Ammonia-Oxidizing Bacteria in Coastal Sediments of the Liaohe Estuary.

PubMed

Chang, Yongkai; Fan, Jingfeng; Su, Jie; Ming, Hongxia; Zhao, Wen; Shi, Yan; Ji, Fengyun; Guo, Limei; Zan, Shuaijun; Li, Bochao; Guo, Hao; Guan, Daoming

2017-05-01

Ammonia-oxidizing bacteria (AOB) play an important role in nitrification in estuaries. The aim of this study was to examine the spatial abundance, diversity, and activity of AOB in coastal sediments of the Liaohe Estuary using quantitative PCR, high-throughput sequencing of the amoA gene coding the ammonia monooxygenase enzyme active subunit, and sediment slurry incubation experiments. AOB abundance ranged from 8.54 × 10 4 to 5.85 × 10 6 copies g -1 of wet sediment weight and exhibited an increasing trend from the Liaohe Estuary to the open coastal zone. Potential nitrification rates (PNRs) ranged from 0.1 to 336.8 nmol N g -1 day -1 along the estuary to the coastal zone. Log AOB abundance and PNRs were significantly positively correlated. AOB richness decreased from the estuary to the coastal zone. High-throughput sequencing analysis indicated that the majority of amoA gene sequences fell within the Nitrosomonas and Nitrosomonas-like clade, and only a few sequences were clustered within the Nitrosospira clade. This finding indicates that the Nitrosomonas-related lineage may be more adaptable to the specific conditions in this estuary than the Nitrosospira lineage. Sites with high nitrification rates were located in the southern open region and were dominated by the Nitrosomonas-like lineage, whereas the Nitrosospira lineage was found primarily in the northern estuary mouth sites with low nitrification rates. Thus, nitrification potentials in Liaohe estuarine sediments in the southern open region were greater than those in the northern estuary mouth, and the Nitrosomonas-related lineage might play a more important role than the Nitrosospira lineage in nitrification in this estuary.

amoA Gene abundances and nitrification potential rates suggest that benthic ammonia-oxidizing bacteria and not Archaea dominate N cycling in the Colne Estuary, United Kingdom.

PubMed

Li, Jialin; Nedwell, David B; Beddow, Jessica; Dumbrell, Alex J; McKew, Boyd A; Thorpe, Emma L; Whitby, Corinne

2015-01-01

Nitrification, mediated by ammonia-oxidizing bacteria (AOB) and ammonia-oxidizing archaea (AOA), is important in global nitrogen cycling. In estuaries where gradients of salinity and ammonia concentrations occur, there may be differential selections for ammonia-oxidizer populations. The aim of this study was to examine the activity, abundance, and diversity of AOA and AOB in surface oxic sediments of a highly nutrified estuary that exhibits gradients of salinity and ammonium. AOB and AOA communities were investigated by measuring ammonia monooxygenase (amoA) gene abundance and nitrification potentials both spatially and temporally. Nitrification potentials differed along the estuary and over time, with the greatest nitrification potentials occurring mid-estuary (8.2 μmol N grams dry weight [gdw](-1) day(-1) in June, increasing to 37.4 μmol N gdw(-1) day(-1) in January). At the estuary head, the nitrification potential was 4.3 μmol N gdw(-1) day(-1) in June, increasing to 11.7 μmol N gdw(-1) day(-1) in January. At the estuary head and mouth, nitrification potentials fluctuated throughout the year. AOB amoA gene abundances were significantly greater (by 100-fold) than those of AOA both spatially and temporally. Nitrosomonas spp. were detected along the estuary by denaturing gradient gel electrophoresis (DGGE) band sequence analysis. In conclusion, AOB dominated over AOA in the estuarine sediments, with the ratio of AOB/AOA amoA gene abundance increasing from the upper (freshwater) to lower (marine) regions of the Colne estuary. These findings suggest that in this nutrified estuary, AOB (possibly Nitrosomonas spp.) were of major significance in nitrification. Copyright © 2015, American Society for Microbiology. All Rights Reserved.

Suspended Sediment Dynamics in the Macrotidal Seine Estuary (France): 2. Numerical Modeling of Sediment Fluxes and Budgets Under Typical Hydrological and Meteorological Conditions

NASA Astrophysics Data System (ADS)

Schulz, E.; Grasso, F.; Le Hir, P.; Verney, R.; Thouvenin, B.

2018-01-01

Understanding the sediment dynamics in an estuary is important for its morphodynamic and ecological assessment as well as, in case of an anthropogenically controlled system, for its maintenance. However, the quantification of sediment fluxes and budgets is extremely difficult from in-situ data and requires thoroughly validated numerical models. In the study presented here, sediment fluxes and budgets in the lower Seine Estuary were quantified and investigated from seasonal to annual time scales with respect to realistic hydro- and meteorological conditions. A realistic three-dimensional process-based hydro- and sediment-dynamic model was used to quantify mud and sand fluxes through characteristic estuarine cross-sections. In addition to a reference experiment with typical forcing, three experiments were carried out and analyzed, each differing from the reference experiment in either river discharge or wind and waves so that the effects of these forcings could be separated. Hydro- and meteorological conditions affect the sediment fluxes and budgets in different ways and at different locations. Single storm events induce strong erosion in the lower estuary and can have a significant effect on the sediment fluxes offshore of the Seine Estuary mouth, with the flux direction depending on the wind direction. Spring tides cause significant up-estuary fluxes at the mouth. A high river discharge drives barotropic down-estuary fluxes at the upper cross-sections, but baroclinic up-estuary fluxes at the mouth and offshore so that the lower estuary gains sediment during wet years. This behavior is likely to be observed worldwide in estuaries affected by density gradients and turbidity maximum dynamics.

DOE Office of Scientific and Technical Information (OSTI.GOV)

Sather, Nichole K.; Storch, Adam; Johnson, Gary E.

The study reported here was conducted by researchers at Pacific Northwest National Laboratory (PNNL), the Oregon Department of Fish and Wildlife (ODFW), the University of Washington (UW), and the National Marine Fisheries Service (NMFS) for the U.S. Army Corps of Engineers, Portland District (USACE). This research project was initiated in 2007 by the Bonneville Power Administration to investigate critical uncertainties regarding juvenile salmon ecology in shallow tidal freshwater habitats of the lower Columbia River. However, as part of the Washington Memorandum of Agreement, the project was transferred to the USACE in 2010. In transferring from BPA to the USACE, themore » focus of the tidal freshwater research project shifted from fundamental ecology toward the effectiveness of restoration in the Lower Columbia River and estuary (LCRE). The research is conducted within the Action Agencies Columbia Estuary Ecosystem Restoration Program (CEERP). Data reported herein spans the time period May 2010 to September 2011.« less

Surface water, groundwater, and social science measurements in a prototype hydrologic observatory

NASA Astrophysics Data System (ADS)

Genereux, D.; Duffy, C.; Famiglietti, J.; Helly, J.; Hooper, R.; Krajewski, W.; McKnight, D.; Ogden, F.; Reckhow, K.; Scanlon, B.; Shabmasn, L.

2003-12-01

We convened in late April 2003 to begin work on the design for a "paper" prototype hydrologic observatory (HO) in the watershed of the Neuse estuary in North Carolina. This design example was to specify what would be measured in the HO, why, where, how, how often, and how much it would cost. This presentation focuses on aspects of the design related to stream and river measurements (discharge, water quality, fluvial geomorphology and sediment), groundwater measurements, and groundwater interaction with streams, rivers, and the estuary. Also considered is the collection of social sciences data to support multidisciplinary studies of land and water use and the consequences for flooding, water supply, and water quality. A second presentation in this session (Scanlon et al.) covers atmospheric and land surface aspects of the HO design, including recharge and ET. The design calls for measurements to quantify surface and subsurface hydrologic fluxes (water, solutes, sediment) into the Neuse estuary, and internally within the watershed at a wide range of spatial scales (about 5 orders of magnitude, roughly 0.1-10,000 square km). One hydrologic goal is to construct reliable water budgets for watersheds spanning this full range of scales, from the smallest to the full Neuse estuary watershed. A linked water quality goal is a strong quantitative characterization of the hydrologic storage and transport of nitrogen, a major water quality issue in this and many other large watersheds with major agricultural operations. Geomorphological observations will target the effects of physiographic and anthropogenic factors on rates of erosion, residence times of sediment in the fluvial system, and the role of wetlands and channel sources on the discharge of sediment and sorbed nutrients to the Neuse estuary during extreme events. Measurements will span the entire Neuse watershed but be more concentrated in a subset of 6 intermediate-size watersheds (averaging about 500 square km) that represent zones of different geology, land use, and topography within the larger watershed. We do not claim that the design is "optimal" in a rigorous statistical sense, but believe the reasoning used in the design is sound and applicable to other sites. The design and its staged implementation plan are flexible and allow the reasonably full coverage of the hydrologic cycle (and reasonable core) necessary to yield new insights and to make the HO an attractive site for individual studies.

Modelling shoal margin collapses and their morphodynamic effect on channels and shoals in a sandy estuary

NASA Astrophysics Data System (ADS)

van Dijk, W. M.; Mastbergen, D. R.; Van der Werf, J. J.; Leuven, J.; Kleinhans, M. G.

2017-12-01

Channel bank failure and collapses of shoal margins due to flow slides have been recorded in Dutch estuaries for the past 200 years. The effects of these collapses on the morphodynamics of estuaries are unknown, but could potentially increase the dynamics of channel-shoal interactions by causing perturbations of up to a million cubic meters per event, which could impact habitats and navigability. The processes of shoal margin collapses are currently not included in numerical morphodynamic models. The objectives of this study are to investigate where shoal margins collapses typically occur, what their dimensions are, and to model how shoal margin collapses affect the morphodynamics at the channel-shoal scale. We identified 300 shoal margin collapses from bathymetry data of the Western Scheldt estuary for the period 1959-2015, and found that the shape of a shoal margin collapse is well represented by 1/3 of an ellipsoid, and that its volume has a log-normal distribution with an average of 100,000 m3. We implemented a parameterization for shoal margin collapses and tested their effects on morphodynamics in a Delft3D numerical model schematization of the Western Scheldt estuary. Three sets of scenarios were analyzed for near-field morphodynamics and far-field effects on flow pattern and channel-bar morphology: 1) an observed single shoal margin collapse of 2014, 2) collapses on various locations that are susceptible to collapses, and 3) our novel stochastic model producing collapses over a time span of a decade. Results show that single shoal margin collapses only affect the local dynamics in longitudinal direction and dampen out within a year when the collapse is small. When larger disturbances reach the seaward or landward sill at tidal channel junctions over a longer time span, the bed elevation at the sill increases on average and decrease the hydraulic geometry of the channel junctions. The extent of far-field effects is sensitive to the grain-size of the deposit, where finer sediments are transported further away. The location of the deposit across the channel matters for disturbing the region around the collapse, where sediment transport is highest for the strongest residual current. These results imply that disturbances caused by dredging and dumping may likewise affect the dynamics of channel junctions.

Introduction to Estuaries

EPA Science Inventory

Estuaries, although minor geographical features at the global scale, have major importance for society and the world’s economies. This chapter introduces estuaries by presenting an overview of definitions, origins, physical, chemical and ecological attributes, and the interaction...

Tidal Response to Sea-Level Rise in Different Types of Estuaries: The Importance of Length, Bathymetry, and Geometry

NASA Astrophysics Data System (ADS)

Du, Jiabi; Shen, Jian; Zhang, Yinglong J.; Ye, Fei; Liu, Zhuo; Wang, Zhengui; Wang, Ya Ping; Yu, Xin; Sisson, Mac; Wang, Harry V.

2018-01-01

Tidal response to sea-level rise (SLR) varies in different coastal systems. To provide a generic pattern of tidal response to SLR, a systematic investigation was conducted using numerical techniques applied to idealized and realistic estuaries, with model results cross-checked by analytical solutions. Our results reveal that the response of tidal range to SLR is nonlinear, spatially heterogeneous, and highly affected by the length and bathymetry of an estuary and weakly affected by the estuary convergence with an exception of strong convergence. Contrary to the common assumption that SLR leads to a weakened bottom friction, resulting in increased tidal amplitude, we demonstrate that tidal range is likely to decrease in short estuaries and in estuaries with a narrow channel and large low-lying shallow areas.

Improving estuary models by reducing uncertainties associated with river flows

NASA Astrophysics Data System (ADS)

Robins, Peter E.; Lewis, Matt J.; Freer, Jim; Cooper, David M.; Skinner, Christopher J.; Coulthard, Tom J.

2018-07-01

To mitigate against future changes to estuaries such as water quality, catchment and estuary models can be coupled to simulate the transport of harmful pathogenic viruses, pollutants and nutrients from their terrestrial sources, through the estuary and to the coast. To predict future changes to estuaries, daily mean river flow projections are typically used. We show that this approach cannot resolve higher frequency discharge events that have large impacts to estuarine dilution, contamination and recovery for two contrasting estuaries. We therefore characterise sub-daily scale flow variability and propagate this through an estuary model to provide robust estimates of impacts for the future. River flow data (35-year records at 15-min sampling) were used to characterise variabilities in storm hydrograph shapes and simulate the estuarine response. In particular, we modelled a fast-responding catchment-estuary system (Conwy, UK), where the natural variability in hydrograph shapes generated large variability in estuarine circulation that was not captured when using daily-averaged river forcing. In the extreme, the freshwater plume from a 'flash' flood (lasting <12 h) was underestimated by up to 100% - and the response to nutrient loading was underestimated further still. A model of a slower-responding system (Humber, UK), where hydrographs typically last 2-4 days, showed less variability in estuarine circulation and good approximation with daily-averaged flow forcing. Our result has implications for entire system impact modelling; when we determine future changes to estuaries, some systems will need higher resolution future river flow estimates.

Analysis of Salinity Intrusion in the San Francisco Bay-Delta using a GA- Optimized Neural Net, and Application of the Model to Prediction in the Elkhorn Slough Habitat

NASA Technical Reports Server (NTRS)

Thompson, David E.; Rajkumar, T.; Clancy, Daniel (Technical Monitor)

2002-01-01

The San Francisco Bay Delta is a large hydrodynamic complex that incorporates the Sacramento and San Joaquin Estuaries, the Burman Marsh, and the San Francisco Bay proper. Competition exists for the use of this extensive water system both from the fisheries industry, the agricultural industry, and from the marine and estuarine animal species within the Delta. As tidal fluctuations occur, more saline water pushes upstream allowing fish to migrate beyond the Burman Marsh for breeding and habitat occupation. However, the agriculture industry does not want extensive salinity intrusion to impact water quality for human and plant consumption. The balance is regulated by pumping stations located alone the estuaries and reservoirs whereby flushing of fresh water keeps the saline intrusion at bay. The pumping schedule is driven by data collected at various locations within the Bay Delta and by numerical models that predict the salinity intrusion as part of a larger model of the system. The Interagency Ecological Program (IEP) for the San Francisco Bay/Sacramento-San Joaquin Estuary collects, monitors, and archives the data, and the Department of Water Resources provides a numerical model simulation (DSM2) from which predictions are made that drive the pumping schedule. A problem with this procedure is that the numerical simulation takes roughly 16 hours to complete a C: prediction. We have created a neural net, optimized with a genetic algorithm, that takes as input the archived data from multiple stations and predicts stage, salinity, and flow at the Carquinez Straits (at the downstream end of the Burman Marsh). This model seems to be robust in its predictions and operates much faster than the current numerical DSM2 model. Because the system is strongly tidal driven, we used both Principal Component Analysis and Fast Fourier Transforms to discover dominant features within the IEP data. We then filtered out the dominant tidal forcing to discover non-primary tidal effects, and used this to enhance the neural network by mapping input-output relationships in a more efficient manner. Furthermore, the neural network implicitly incorporates both the hydrodynamic and water quality models into a single predictive system. Although our model has not yet been enhanced to demonstrate improve pumping schedules, it has the possibility to support better decision-making procedures that may then be implemented by State agencies if desired. Our intention is now to use this model in the smaller Elkhorn Slough complex near Monterey Bay where no such hydrodynamic model currently exists. At the Elkhorn Slough, we are fusing the neural net model of tidally-driven flow with in situ flow data and airborne and satellite remote sensation data. These further constrain the behavior of the model in predicting the longer-term health and future of this vital estuary.

National Marine Sanctuaries as Sentinel Sites for a Demonstration Marine Biodiversity Observation Network (MBON)

NASA Astrophysics Data System (ADS)

Chavez, F.; Montes, E.; Muller-Karger, F. E.; Gittings, S.; Canonico, G.; Kavanaugh, M.; Iken, K.; Miller, R. J.; Duffy, J. E.; Miloslavich, P.

2016-12-01

The U.S. Federal government (NOAA, NASA, BOEM, and the Smithsonian Institution), academic researchers, and private partners in the U.S. and around the world are working on the design and implementation of a Marine Biodiversity Observation Network (MBON). The program is being coordinated internationally with the Group on Earth Observations (GEO BON) and two key Intergovernmental Oceanographic Commission (IOC) programs, namely the Global Ocean Observing System (GOOS) and the Ocean Biogeographic Information System (OBIS). The goal is to monitor changes in marine biodiversity within various geographic settings. In the U.S., demonstration projects include four National Marine Sanctuaries (NMS): Florida Keys, Monterey Bay, Flower Garden Banks, and Channel Islands. The Smithsonian is implementing several programs around the world under the Marine Global Earth Observatory (MarineGEO) partnership, directed by the Smithsonian's Tennenbaum Marine Observatories Network (TMON). The overarching goal is to observe and understand life, from microbes to whales, in different coastal and continental shelf habitats, and its role in maintaining resilient ecosystems. The project also seeks to determine biodiversity baselines in these ecosystems based on time-series observations to assess changes in populations and overall biodiversity over time. Efforts are being made to engage with various countries in the Americas to participate in an MBON Pole to Pole in the Americas initiative proposed by Mexico. We are looking to have other regions organized to conduct similar planning efforts. The present MBON pilot projects encompass a range of marine environments, including deep sea, continental shelves, and coastal habitats including estuaries, wetlands, and coral reefs. The MBON will facilitate and enable regional biodiversity assessments, and contributes to addressing several U.N. Sustainable Development Goals to conserve and sustainably use marine resources, and provide a means for countries to address targets and goals defined under the Convention on Biological Diversity.

Outlier detection for groundwater data in France

NASA Astrophysics Data System (ADS)

Valmy, Larissa; de Fouquet, Chantal; Bourgine, Bernard

2014-05-01

Quality and quantity water in France are increasingly observed since the 70s. Moreover, in 2000, the EU Water Framework Directive established a framework for community action in the water policy field for the protection of inland surface waters (rivers and lakes), transitional waters (estuaries), coastal waters and groundwater. It will ensure that all aquatic ecosystems and, with regard to their water needs, terrestrial ecosystems and wetlands meet 'good status' by 2015. The Directive requires Member States to establish river basin districts and for each of these a river basin management plan. In France, monitoring programs for the water status were implemented in each basin since 2007. The data collected through these programs feed into an information system which contributes to check the compliance of water environmental legislation implementation, assess the status of water guide management actions (programs of measures) and evaluate their effectiveness, and inform the public. Our work consists in study quality and quantity groundwater data for some basins in France. We propose a specific mathematical approach in order to detect outliers and study trends in time series. In statistic, an outlier is an observation that lies outside the overall pattern of a distribution. Usually, the presence of an outlier indicates some sort of problem, thus, it is important to detect it in order to know the cause. In fact, techniques for temporal data analysis have been developed for several decades in parallel with geostatistical methods. However compared to standard statistical methods, geostatistical analysis allows incomplete or irregular time series analysis. Otherwise, tests carried out by the BRGM showed the potential contribution of geostatistical methods for characterization of environmental data time series. Our approach is to exploit this potential through the development of specific algorithms, tests and validation of methods. We will introduce and explain our method and approach by considering the Loire Bretagne basin case.

Field and modelling investigations of fresh-water plume behaviour in response to infrequent high-precipitation events, Sydney Estuary, Australia

NASA Astrophysics Data System (ADS)

B., Serena; Lee | Gavin, F.; Birch | Charles, J.; Lemckert

2011-05-01

Runoff from the urban environment is a major contributor of non-point source contamination for many estuaries, yet the ultimate fate of this stormwater within the estuary is frequently unknown in detail. The relationship between catchment rainfall and estuarine response within the Sydney Estuary (Australia) was investigated in the present study. A verified hydrodynamic model (Environmental Fluid Dynamics Computer Code) was utilised in concert with measured salinity data and rainfall measurements to determine the relationship between rainfall and discharge to the estuary, with particular attention being paid to a significant high-precipitation event. A simplified rational method for calculating runoff based upon daily rainfall, subcatchment area and runoff coefficients was found to replicate discharge into the estuary associated with the monitored event. Determining fresh-water supply based upon estuary conditions is a novel technique which may assist those researching systems where field-measured runoff data are not available and where minor field-measured information on catchment characteristics are obtainable. The study concluded that since the monitored fresh-water plume broke down within the estuary, contaminants associated with stormwater runoff due to high-precipitation events (daily rainfall > 50 mm) were retained within the system for a longer period than was previously recognised.

Geographic signatures of North American West Coast estuaries

USGS Publications Warehouse

Emmett, Robert; Llansó, Roberto; Newton, Jan; Thom, Ron; Hornberger, Michelle; Morgan, Cheryl; Levings, Colin; Copping, Andrea; Fishman, Paul

2000-01-01

West Coast estuaries are geologically young and composed of a variety of geomorphological types. These estuaries range from large fjords to shallow lagoons; from large to low freshwater flows. Natural hazards include E1 Niños, strong Pacific storms, and active tectonic activity. West Coast estuaries support a wide range of living resources: five salmon species, harvestable shellfish, waterfowl and marine birds, marine mammals, and a variety of algae and plants. Although populations of many of these living resources have declined (salmonids), others have increased (marine mammals). West Coast estuaries are also centers of commerce and increasingly large shipping traffic. The West Coast human population is rising faster than most other areas of the U.S. and Canada, and is distributed heavily in southern California, the San Francisco Bay area, around Puget Sound, and the Fraser River estuary. While water pollution is a problem in many of the urbanized estuaries, most estuaries do not suffer from poor water quality. Primary estuarine problems include habitat alterations, degradation, and loss; diverted freshwater flows; marine sediment contamination; and exotic species introductions. The growing West Coast economy and population are in part related to the quality of life, which is dependent on the use and enjoyment of abundant coastal natural resources.

Colonization and nursery habitat use patterns of larval and juvenile flatfish species in a small temperate estuary

NASA Astrophysics Data System (ADS)

Primo, Ana Lígia; Azeiteiro, Ulisses M.; Marques, Sónia C.; Martinho, Filipe; Baptista, Joana; Pardal, Miguel A.

2013-02-01

Migrations between coastal and estuarine nursery areas are essential for successful completion of the life cycle of several marine fish. The present study evaluates the use of a small temperate estuary, the Mondego, Portugal, as a nursery habitat for several flatfishes during their early life stages. Data from seasonal and diel larval sampling at the mouth of the estuary and both larvae and juvenile monthly spatial distribution in the estuary (2005-2009) were gathered in order to investigate the life cycle of Platichthys flesus, Solea solea and Solea senegalensis. Larvae entrance in the estuary occurred mainly during summer and autumn with no evidence for diel or tidal vertical stratification. S. senegalensis larvae were present in all seasons at downstream areas presenting low successful settlement and juveniles' densities inside the estuary. Conversely, P. flesus and S. solea were mainly present as juveniles with upstream areas being preferred by flounder. Both species larvae seemed to settle in nearby coastal areas. The importance of the Mondego estuary for flatfishes differed according to the species, playing an important role mainly during the first year for all species. The present study highlights the importance of integrating larval and juvenile stages of fish to assess the very important role of estuaries as nursery areas.

Insights into microbial communities involved in mercury methylation in the San Francisco Bay estuary

NASA Astrophysics Data System (ADS)

Machak, C.; Francis, C. A.

2013-12-01

San Francisco Bay (SFB) estuary is the largest estuary on the western coast of the United States, draining a watershed covering more than one third of the state of California. Mercury (Hg) contamination in SFB, as a result of gold and mercury mining in the Coast Range and Sierra Nevada region, has been observed for at least 150 years. Additional sources of Hg contamination to SFB come from active oil refineries, manufacturing, and wastewater treatment plants in the area. Concentrations of methylmercury in the sediment at the time of sample collection for the present study ranged from 0.011-3.88 μg/kg (dry weight). At some sites, the concentration exceeds wetland toxicity limits, posing a threat to the health of the ecosystem and potentially endangering humans that use the estuary for food and recreation. This study attempts to understand the factors that control the transformation of Hg to methylmercury by microorganisms in aquatic sediments, where the majority of Hg methylation is known to occur. Under anoxic conditions, some sulfate- and iron-reducing bacteria have the capacity to transform Hg into methylmercury. To better understand the microbial communities involved in Hg methylation, an extensive library of 16S rRNA sequences was generated (via Illumina sequencing) from sediment samples at 20 sites throughout the SFB estuary. In addition to genomic data, we have access to a massive database of geochemical measurements made by the SFB Regional Monitoring Program at the sampling locations. These measurements show that our sediment samples have varying methylmercury concentrations and span gradients in porewater sulfate and Fe(III), which are the two known alternative electron acceptors for mercury-methylating anaerobic bacteria. The sampling sites also span gradients in other geochemical factors known to influence microbial community composition (and potentially Hg mercury methylation), such as available organic carbon, pH, and salinity. We will present the results of our analysis of the effect of various physical and geochemical parameters on the microbial community composition and abundance of known Hg methylators throughout SFB sediments.

"Estuaries and coasts" CLIL* lesson plans in English and geology fieldtrip to Cornwall for students in European section

NASA Astrophysics Data System (ADS)

Bontempelli, Nathalie; Voyer, Karine; Lebourgeois, Patrick

2013-04-01

When the European section was created in our high school we had to choose an overarching theme. After considering that we live both in the River Seine estuary and near the English Channel it became obvious that our theme should be "estuaries and coasts". We began the 2012-2013 school year with a day-trip around the River Seine estuary to introduce the theme. First we made a general landscape study from a viewpoint, then we discussed the history of the navigation on the Seine, of local farming on marshland and finally we focused on farmhouse architecture. To conclude we visited the natural reserve near the "Normandy Bridge". As an introduction our poster aims at presenting this part of Normandy. And then we would like to show some examples of our CLIL lesson plans about this chosen topic. The aim of a CLIL lesson is to create interactive speaking between students working in pairs or in groups. There are three different stages: - Warm-up activities - In-depth study: listening, reading, echoing, looking for information on the internet, making a slide show and doing an oral presentation, participating to a role play… - Assessment : using what has been learnt to answer questions Finally we wish to present our field trip to Cornwall. We have already done it twice before (in 2002 and 2004) and this year it is scheduled in May 2013 with our European section students. The aim of this trip is to study geology and botany in English in order to extend what we teach in our CLIL lessons about estuaries and coasts. It also helps promoting exchanges with British families and building intercultural knowledge and understanding. Our program includes for example, fossil hunting and studying the Jurassic cliffs in Charmouth, observing an old ocean crust in Coverack, visiting Saint-Mickael's mount, discovering a tin mine in Geevor, walking through the "Lost Gardens of Heligan" and thus discovering an example of this world-renowned restored English garden, and last but not least having an overview of the biodiversity in the Lizard peninsula. *(Content and Language Integrated Learning)

Geochemistry of the Amazon Estuary

USGS Publications Warehouse

Smoak, Joseph M.; Krest, James M.; Swarzenski, Peter W

2006-01-01

The Amazon River supplies more freshwater to the ocean than any other river in the world. This enormous volume of freshwater forces the estuarine mixing out of the river channel and onto the continental shelf. On the continental shelf, the estuarine mixing occurs in a very dynamic environment unlike that of a typical estuary. The tides, the wind, and the boundary current that sweeps the continental shelf have a pronounced influence on the chemical and biological processes occurring within the estuary. The dynamic environment, along with the enormous supply of water, solutes and particles makes the Amazon estuary unique. This chapter describes the unique features of the Amazon estuary and how these features influence the processes occurring within the estuary. Examined are the supply and cycling of major and minor elements, and the use of naturally occurring radionuclides to trace processes including water movement, scavenging, sediment-water interaction, and sediment accumulation rates. The biogeochemical cycling of carbon, nitrogen, and phosphorus, and the significances of the Amazon estuary in the global mass balance of these elements are examined.

EXHIBIT OF EMPACT ESTUARY MONITORING HANDBOOKS

EPA Science Inventory

Related EMPACT documents were displayed at the National Estuary Day Celebration held in Washington, DC, September 30-Octuber 4, 2002. The estuary monitoring technology transfer handbooks displayed were prepared based on information and monitoring technologies developed from selec...

Estuary Data Mapper

EPA Science Inventory

The U.S. Environmental Protection Agency (US EPA) is developing e-Estuary, a decision-support system for coastal management. E-Estuary has three elements: an estuarine geo-referenced relational database, watershed GIS coverages, and tools to support decision-making. To facilita...

Turning the Tide: Estuaries Shaped by Channel-Shoal Interactions, Eco-engineers and Inherited Landscapes

NASA Astrophysics Data System (ADS)

Kleinhans, M. G.; Braat, L.; Leuven, J.; Baar, A. W.; van der Vegt, M.; Van Maarseveen, M. C. G.; Markies, H.; Roosendaal, C.; van Eijk, A.

2015-12-01

Estuaries exhibit correlations between inlet dimensions, tidal prism and intertidal area, but to what extent estuary planform shape and shoal patterns resulted from biomorphological processes or from inherited conditions such as coastal plain and drowned valley dimensions remains unclear. We explore the hypothesis that mud flats and vegetation as a self-formed lateral confinement have effects analogous to that of river floodplain on braided versus meandering river patterns. Here we use the Delft3D numerical model and a novel tidal flume setup, the Metronome, to create estuaries from idealized initial conditions, with and without mud supply at the fluvial boundary. Experimental mud was simulated by crushed nutshell. Both the numerical and experimental estuaries were narrower with increasing mud, and had a lower degree of channel braiding. The experimental estuaries developed meanders at the river boundary with floodplain developing on the pointbar whereas cohesionless cases were more dynamic.

Establishing nursery estuary otolith geochemical tags for Sea Bass (Dicentrarchus labrax): Is temporal stability estuary dependent?

NASA Astrophysics Data System (ADS)

Ryan, Diarmuid; Wögerbauer, Ciara; Roche, William

2016-12-01

The ability to determine connectivity between juveniles in nursery estuaries and adult populations is an important tool for fisheries management. Otoliths of juvenile fish contain geochemical tags, which reflect the variation in estuarine elemental chemistry, and allow discrimination of their natal and/or nursery estuaries. These tags can be used to investigate connectivity patterns between juveniles and adults. However, inter-annual variability of geochemical tags may limit the accuracy of nursery origin determinations. Otolith elemental composition was used to assign a single cohort of 0-group sea bass Dicentrarchus labrax to their nursery estuary thus establishing an initial baseline for stocks in waters around Ireland. Using a standard LDFA model, high classification accuracies to nursery sites (80-88%) were obtained. Temporal stability of otolith geochemical tags was also investigated to assess if annual sampling is required for connectivity studies. Geochemical tag stability was found to be strongly estuary dependent.

Transport of dissolved nutrients and chlorophyll a in a tropical estuary, southwest coast of India.

PubMed

Lallu, K R; Fausia, K H; Vinita, J; Balachandran, K K; Naveen Kumar, K R; Rehitha, T V

2014-08-01

Intra-tidal variability in the transport of materials through the Cochin estuary was studied over successive spring and neap tides to estimate the export fluxes of nutrients and chlorophyll a into the adjoining coastal zone. The results showed that there was a substantial increase in the freshwater flow into the estuary following heavy rains (~126 mm) prior to the spring tide observations. The estuary responded accordingly with a relatively larger export through the Cochin inlet during spring tide over neap tide. Despite an increased freshwater discharge during spring tide, the export fluxes of phosphate and ammonia were high during neap tide due to their input into the estuary through anthropogenic activities. The significance of this study is that the export fluxes from the Cochin estuary could be a major factor sustaining the spectacular monsoon fishery along the southwest coast of India.

Reverse Estuarine Circulation Due to Local and Remote Wind Forcing, Enhanced by the Presence of Along-Coast Estuaries

NASA Astrophysics Data System (ADS)

Giddings, S. N.; MacCready, P.

2017-12-01

Estuarine exchange flow governs the interaction between oceans and estuaries and thus plays a large role in their biogeochemical processes. This study investigates the variability in estuarine exchange flow due to offshore oceanic conditions including upwelling/downwelling, and the presence of a river plume offshore (from a neighboring estuary). We address these processes via numerical simulations at the mouth of the Salish Sea, a large estuarine system in the Northeast Pacific. An analysis of the Total Exchange Flow indicates that during the upwelling season, the exchange flow is fairly consistent in magnitude and oriented in a positive (into the estuary at depth and out at the surface) direction. However, during periods of downwelling favorable winds, the exchange flow shows significantly more variability including multiple reversals, consistent with observations, and surface intrusions of the Columbia River plume which originates 250 km to the south. Numerical along-strait momentum budgets show that the exchange flow is forced dominantly by the pressure gradients, particularly the baroclinic. The pressure gradient is modified by Coriolis and sometimes advection, highlighting the importance of geostrophy and local adjustments. In experiments conducted without the offshore river plume, reversals still occur but are weaker, and the baroclinic pressure gradient plays a reduced role. These results suggest that estuaries along strong upwelling coastlines should experience significant modulation in the exchange flow during upwelling versus downwelling conditions. Additionally, they highlight the importance of nearby estuaries impacting one-another, not only in terms of connectivity, but also altering the exchange flow.