Design of a composite wing extension for a general aviation aircraft

NASA Technical Reports Server (NTRS)

Adney, P. S.; Horn, W. J.

1984-01-01

A composite wing extension was designed for a typical general aviation aircraft to improve lift curve slope, dihedral effect, and lift to drag ratio. Advanced composite materials were used in the design to evaluate their use as primary structural components in general aviation aircraft. Extensive wind tunnel tests were used to evaluate six extension shapes. The extension shape chosen as the best choice was 28 inches long with a total area of 17 square feet. Subsequent flight tests showed the wing extension's predicted aerodynamic improvements to be correct. The structural design of the wing extension consisted of a hybrid laminate carbon core with outer layers of Kevlar - layed up over a foam interior which acted as an internal support. The laminate skin of the wing extension was designed from strength requirements, and the foam core was included to prevent buckling. A joint lap was recommended to attach the wing extension to the main wing structure.

Tectonic evolution and extension at the Møre Margin - Offshore mid-Norway

NASA Astrophysics Data System (ADS)

Theissen-Krah, S.; Zastrozhnov, D.; Abdelmalak, M. M.; Schmid, D. W.; Faleide, J. I.; Gernigon, L.

2017-11-01

Lithospheric stretching is the key process in forming extensional sedimentary basins at passive rifted margins. This study explores the stretching factors, resulting extension, and structural evolution of the Møre segment on the Mid-Norwegian continental margin. Based on the interpretation of new and reprocessed high-quality seismic, we present updated structural maps of the Møre margin that show very thick post-rift sediments in the central Møre Basin and extensive sill intrusion into the Cretaceous sediments. A major shift in subsidence and deposition occurred during mid-Cretaceous. One transect across the Møre continental margin from the Slørebotn Subbasin to the continent-ocean boundary is reconstructed using the basin modelling software TecMod. We test different initial crustal configurations and rifting events and compare our structural reconstruction results to stretching factors derived both from crustal thinning and the classical backstripping/decompaction approach. Seismic interpretation in combination with structural reconstruction modelling does not support the lower crustal bodies as exhumed and serpentinised mantle. Our extension estimate along this transect is 188 ± 28 km for initial crustal thickness varying between 30 and 40 km.

Parallel Extension Tectonics (PET): Early Cretaceous tectonic extension of the Eastern Eurasian continent

NASA Astrophysics Data System (ADS)

Liu, Junlai; Ji, Mo; Ni, Jinlong; Guan, Huimei; Shen, Liang

2017-04-01

The present study reports progress of our recent studies on the extensional structures in eastern North China craton and contiguous areas. We focus on characterizing and timing the formation/exhumation of the extensional structures, the Liaonan metamorphic core complex (mcc) and the Dayingzi basin from the Liaodong peninsula, the Queshan mcc, the Wulian mcc and the Zhucheng basin from the Jiaodong peninsula, and the Dashan magmatic dome within the Sulu orogenic belt. Magmatic rocks (either volcanic or plutonic) are ubiquitous in association with the tectonic extension (both syn- and post-kinematic). Evidence for crustal-mantle magma mixing are popular in many syn-kinematic intrusions. Geochemical analysis reveals that basaltic, andesitic to rhyolitic magmas were generated during the tectonic extension. Sr-Nd isotopes of the syn-kinematic magmatic rocks suggest that they were dominantly originated from ancient or juvenile crust partly with mantle signatures. Post-kinematic mafic intrusions with ages from ca. 121 Ma to Cenozoic, however, are of characteristic oceanic island basalts (OIB)-like trace element distribution patterns and relatively depleted radiogenic Sr-Nd isotope compositions. Integrated studies on the extensional structures, geochemical signatures of syn-kinematic magmatic rocks (mostly of granitic) and the tectono-magmatic relationships suggest that extension of the crust and the mantle lithosphere triggered the magmatisms from both the crust and the mantle. The Early Cretaceous tectono-magmatic evolution of the eastern Eurasian continent is governed by the PET in which the tectonic processes is subdivided into two stages, i.e. an early stage of tectonic extension, and a late stage of collapse of the extended lithosphere and transformation of lithospheric mantle. During the early stage, tectonic extension of the lithosphere led to detachment faulting in both the crust and mantle, resulted in the loss of some of the subcontinental roots, gave rise to the exhumation of the mccs, and triggered plutonic emplacement and volcanic eruptions of hybrid magmas. During the late stage, the nature of mantle lithosphere in North China was changed from the ancient SCLM to the juvenile SCLM. Extensional structures in eastern Eurasian continent provide a general architecture of the extensional tectonics of a rifted continent. Progressive extension resulted a sudden collaps of the crust (lithosphere) at ca. 130 to 120 Ma, associated with exhumation of mcc's and giant syn-kinematic magmatism, and post-kinematic magmatism. Parallel extension of both the crust and the mantle resulted in detachment faulting and magmatism, and also contributed to inhomogeneous thinning of the NCC lithosphere. Paleo-Pacific plate subduction and roll-back of the subducting oceanic plate contributed to the PET tectonic processes.

Three-Dimensional Extension of a Digital Library Service System

ERIC Educational Resources Information Center

Xiao, Long

2010-01-01

Purpose: The paper aims to provide an overall methodology and case study for the innovation and extension of a digital library, especially the service system. Design/methodology/approach: Based on the three-dimensional structure theory of the information service industry, this paper combines a comprehensive analysis with the practical experiences…

The inverse niche model for food webs with parasites

USGS Publications Warehouse

Warren, Christopher P.; Pascual, Mercedes; Lafferty, Kevin D.; Kuris, Armand M.

2010-01-01

Although parasites represent an important component of ecosystems, few field and theoretical studies have addressed the structure of parasites in food webs. We evaluate the structure of parasitic links in an extensive salt marsh food web, with a new model distinguishing parasitic links from non-parasitic links among free-living species. The proposed model is an extension of the niche model for food web structure, motivated by the potential role of size (and related metabolic rates) in structuring food webs. The proposed extension captures several properties observed in the data, including patterns of clustering and nestedness, better than does a random model. By relaxing specific assumptions, we demonstrate that two essential elements of the proposed model are the similarity of a parasite's hosts and the increasing degree of parasite specialization, along a one-dimensional niche axis. Thus, inverting one of the basic rules of the original model, the one determining consumers' generality appears critical. Our results support the role of size as one of the organizing principles underlying niche space and food web topology. They also strengthen the evidence for the non-random structure of parasitic links in food webs and open the door to addressing questions concerning the consequences and origins of this structure.

Multi-Canted Coils, Tubes, and Structures

NASA Technical Reports Server (NTRS)

Jaster, Mark L. (Inventor)

2015-01-01

Coil, tube, and other structures configured with a plurality of individual coils, internal structures, legs or extensions with each having multiple cants per coil, internal structure, leg or extension, and wherein the cants formed therein allow for a load-deflection force when each is compressed. In addition, any horizontal or moment forces are substantially reduced and/or eliminated when a downward vertical force is applied, as minimal or no torsion is created in the individual coils, legs or extensions.

Crystal Structure of Saccharomyces cerevisiae ECM4, a Xi-Class Glutathione Transferase that Reacts with Glutathionyl-(hydro)quinones

PubMed Central

Schwartz, Mathieu; Didierjean, Claude; Hecker, Arnaud; Girardet, Jean-Michel; Morel-Rouhier, Mélanie; Gelhaye, Eric; Favier, Frédérique

2016-01-01

Glutathionyl-hydroquinone reductases (GHRs) belong to the recently characterized Xi-class of glutathione transferases (GSTXs) according to unique structural properties and are present in all but animal kingdoms. The GHR ScECM4 from the yeast Saccharomyces cerevisiae has been studied since 1997 when it was found to be potentially involved in cell-wall biosynthesis. Up to now and in spite of biological studies made on this enzyme, its physiological role remains challenging. The work here reports its crystallographic study. In addition to exhibiting the general GSTX structural features, ScECM4 shows extensions including a huge loop which contributes to the quaternary assembly. These structural extensions are probably specific to Saccharomycetaceae. Soaking of ScECM4 crystals with GS-menadione results in a structure where glutathione forms a mixed disulfide bond with the cysteine 46. Solution studies confirm that ScECM4 has reductase activity for GS-menadione in presence of glutathione. Moreover, the high resolution structures allowed us to propose new roles of conserved residues of the active site to assist the cysteine 46 during the catalytic act. PMID:27736955

An enhanced beam model for constrained layer damping and a parameter study of damping contribution

NASA Astrophysics Data System (ADS)

Xie, Zhengchao; Shepard, W. Steve, Jr.

2009-01-01

An enhanced analytical model is presented based on an extension of previous models for constrained layer damping (CLD) in beam-like structures. Most existing CLD models are based on the assumption that shear deformation in the core layer is the only source of damping in the structure. However, previous research has shown that other types of deformation in the core layer, such as deformations from longitudinal extension and transverse compression, can also be important. In the enhanced analytical model developed here, shear, extension, and compression deformations are all included. This model can be used to predict the natural frequencies and modal loss factors. The numerical study shows that compared to other models, this enhanced model is accurate in predicting the dynamic characteristics. As a result, the model can be accepted as a general computation model. With all three types of damping included and the formulation used here, it is possible to study the impact of the structure's geometry and boundary conditions on the relative contribution of each type of damping. To that end, the relative contributions in the frequency domain for a few sample cases are presented.

The Effectiveness of Extensive versus Intensive Recasts for Learning L2 Grammar

ERIC Educational Resources Information Center

Nassaji, Hossein

2017-01-01

This study investigated the effects of extensive versus intensive recasts. The focus was on the effect of feedback on learning English articles, which, as nonsalient target structures, have been shown to be difficult for many second language learners. Intensive recasts were operationalized as recasts provided on article errors only, while…

Rhetorical Structure of Research Articles in Agricultural Science

ERIC Educational Resources Information Center

Shi, Huimin; Wannaruk, Anchalee

2014-01-01

Although the rhetorical structure of research articles (RA) has been extensively examined from individual sections to complete IMRD sections regarding different disciplines, no research has been addressed to the overall rhetorical structure of RAs as a whole entity in the field of agricultural science. In this study, we analyzed 45 agricultural…

The importance of structural softening for the evolution and architecture of passive margins

PubMed Central

Duretz, T.; Petri, B.; Mohn, G.; Schmalholz, S. M.; Schenker, F. L.; Müntener, O.

2016-01-01

Lithospheric extension can generate passive margins that bound oceans worldwide. Detailed geological and geophysical studies in present and fossil passive margins have highlighted the complexity of their architecture and their multi-stage deformation history. Previous modeling studies have shown the significant impact of coarse mechanical layering of the lithosphere (2 to 4 layer crust and mantle) on passive margin formation. We built upon these studies and design high-resolution (~100–300 m) thermo-mechanical numerical models that incorporate finer mechanical layering (kilometer scale) mimicking tectonically inherited heterogeneities. During lithospheric extension a variety of extensional structures arises naturally due to (1) structural softening caused by necking of mechanically strong layers and (2) the establishment of a network of weak layers across the deforming multi-layered lithosphere. We argue that structural softening in a multi-layered lithosphere is the main cause for the observed multi-stage evolution and architecture of magma-poor passive margins. PMID:27929057

Linguistics, Structuralism, and Semiology Approaches to the Cinema With a Bibliography

ERIC Educational Resources Information Center

Harpole, Charles H.; Hanhardt, John G.

1973-01-01

An introduction to linguistics, structuralism, and semiology, with special emphasis on how these fields affect and can be applied in the study of cinema. The extensive bibliography includes books and articles in five languages. (CH)

[Mobbing: a meta-analysis and integrative model of its antecedents and consequences].

PubMed

Topa Cantisano, Gabriela; Depolo, Marco; Morales Domínguez, J Francisco

2007-02-01

Although mobbing has been extensively studied, empirical research has not led to firm conclusions regarding its antecedents and consequences, both at personal and organizational levels. An extensive literature search yielded 86 empirical studies with 93 samples. The matrix correlation obtained through meta-analytic techniques was used to test a structural equation model. Results supported hypotheses regarding organizational environmental factors as main predictors of mobbing.

Nutrient interleaving below the mixed layer of the Kuroshio Extension Front

NASA Astrophysics Data System (ADS)

Nagai, Takeyoshi; Clayton, Sophie

2017-08-01

Nitrate interleaving structures were observed below the mixed layer during a cruise to the Kuroshio Extension in October 2009. In this paper, we investigate the formation mechanisms for these vertical nitrate anomalies, which may be an important source of nitrate to the oligotrphoc surface waters south of the Kuroshio Extension Front. We found that nitrate concentrations below the main stream of the Kuroshio Extension were elevated compared to the ambient water of the same density ( σ 𝜃 = 23.5-25). This appears to be analogous to the "nutrient stream" below the mixed layer, associated with the Gulf Stream. Strong turbulence was observed above the vertical nitrate anomaly, and we found that this can drive a large vertical turbulent nitrate flux >O (1 mmol N m-2 day-1). A realistic, high-resolution (2 km) numerical simulation reproduces the observed Kuroshio nutrient stream and nitrate interleaving structures, with similar lateral and vertical scales. The model results suggest that the nitrate interleaving structures are first generated at the western side of the meander crest on the south side of the Kuroshio Extension, where the southern tip of the mixed layer front is under frontogenesis. Lagrangian analyses reveal that the vertical shear of geostrophic and subinertial ageostrophic flow below the mixed layer tilts the existing along-isopycnal nitrate gradient of the Kuroshio nutrient stream to form nitrate interleaving structures. This study suggests that the multi-scale combination of (i) the lateral stirring of the Kuroshio nutrient stream by developed mixed layer fronts during fall to winter, (ii) the associated tilting of along-isopycnal nitrate gradient of the nutrient stream by subinertial shear, which forms vertical interleaving structures, and (iii) the strong turbulent diffusion above them, may provide a route to supply nutrients to oligotrophic surface waters on the south side of the Kuroshio Extension.

On Non-Abelian Extensions of 3-Lie Algebras

NASA Astrophysics Data System (ADS)

Song, Li-Na; Makhlouf, Abdenacer; Tang, Rong

2018-04-01

In this paper, we study non-abelian extensions of 3-Lie algebras through Maurer-Cartan elements. We show that there is a one-to-one correspondence between isomorphism classes of non-abelian extensions of 3-Lie algebras and equivalence classes of Maurer-Cartan elements in a DGLA. The structure of the Leibniz algebra on the space of fundamental objects is also analyzed. Supported by National Natural Science Foundation of China under Grant No. 11471139 and National Natural Science Foundation of Jilin Province under Grant No. 20170101050JC

Arabian Plate Deformation: The role of inherited structures in the localization of strain in the Red Sea extensional system

NASA Astrophysics Data System (ADS)

Aldaajani, T.; Furlong, K.; Malservisi, R.

2017-12-01

The Red Sea rift structural architecture changes dramatically along strike from narrow localized spreading (with creation of new oceanic crust) in the south to asymmetrical diffuse extension north of 21 ° latitude. The region of diffuse extension falls within a triangle that is bounded to the east by the Sarhan graben, (a Cenozoic failed rift), to the west by the northern Red Sea Rift, and to the south by the Makkah-Madinah-Nafud (MMN) volcanic line. Geological observations appear to show that tectonic stresses acting on inherited structures within the NW Arabian margin are associated with the region of diffuse extension. In contrast, in the southern Red Sea, a single strong block within the SW Arabian margin led to localize the extension there. Using current velocities from more than 30 GNSS stations distributed within the Arabian plate, we are able to map its rigidity and the distribution of strain along the plate margin. The data show that the transition between the two styles of extension within the Red Sea (crustal accretion vs crustal extension) corresponds with a transition between rigid behavior and diffuse extension within the Arabian Plate. This suggests that the preexisting structures within the Arabian plate play a significant role in the style of extension along the Red Sea margin.

Curriculum Development for Professional Leaders in Extension Education.

ERIC Educational Resources Information Center

Findlay, Edward Weldon

The study is based on the premise that if one is able to identify the areas of behavior in which professionals require competence, one can link this behavior to a related structure of concepts which may serve as logical teaching and learning objectives in the development of training programs. A sample of 211 extension agents (in agriculture, home…

Interplay between self-assembled structure of bone morphogenetic protein-2 (BMP-2) and osteoblast functions in three-dimensional titanium alloy scaffolds: Stimulation of osteogenic activity.

PubMed

Nune, K C; Kumar, A; Murr, L E; Misra, R D K

2016-02-01

Three-dimensional cellular scaffolds are receiving significant attention in bone tissue engineering to treat segmental bone defects. However, there are indications of lack of significant osteoinductive ability of three-dimensional cellular scaffolds. In this regard, the objective of the study is to elucidate the interplay between bone morphogenetic protein (BMP-2) and osteoblast functions on 3D mesh structures with different porosities and pore size that were fabricated by electron beam melting. Self-assembled dendritic microstructure with interconnected cellular-type morphology of BMP-2 on 3D scaffolds stimulated osteoblast functions including adhesion, proliferation, and mineralization, with prominent effect on 2-mm mesh. Furthermore, immunofluorescence studies demonstrated higher density and viability of osteoblasts on lower porosity mesh structure (2 mm) as compared to 3- and 4-mm mesh structures. Enhanced filopodia cellular extensions with extensive cell spreading was observed on BMP-2 treated mesh structures, a behavior that is attributed to the unique self-assembled structure of BMP-2 that effectively communicates with the cells. The study underscores the potential of BMP-2 in imparting osteoinductive capability to the 3D printed scaffolds. © 2015 Wiley Periodicals, Inc.

Experimental Tensile Strength Analysis of Woven-Glass/Epoxy Composite Plates with Central Circular Hole

NASA Astrophysics Data System (ADS)

Hadi, Bambang K.; Rofa, Bima K.

2018-04-01

The use of composite materials in aerospace engineering, as well as in maritime structure has increased significantly during the recent years. The extensive use of composite materials in industrial applications should make composite structural engineers and scientists more aware of the advantage and disadvantage of this material and provide them with necessary data and certification process. One of the problems in composite structures is the existence of hole. Hole can not be avoided in actual structures, since it may be the necessity of providing access for maintenance or due to impact damage. The presence of hole will weaken the structures. Therefore, in this paper, the effect of hole on the strength of glass-woven/epoxy composite will be discussed. Extensive tests have been carried out to study the effect of hole-diameter on the tensile strengths of these specimens. The results showed that the bigger the hole-diameter compared to the width of the specimens has weakened the structures further, as expected. Further study should be carried in the future to model it with the finite element and theoretical analysis precisely.

Post-Traumatic Stress Disorder in Maltreated Youth: A Study of Diagnostic Comorbidity and Child Factors

ERIC Educational Resources Information Center

Linning, Lisa M.; Kearney, Christopher A.

2004-01-01

The study of post-traumatic stress disorder (PTSD) in maltreated youth has received increased attention, though extensive comparisons to maltreated youth without PTSD and administrations of anxiety-based structured diagnostic interviews remain needed. We examined maltreated youth with or without PTSD using structured diagnostic interviews and…

Extension of research data repository system to support direct compute access to biomedical datasets: enhancing Dataverse to support large datasets.

PubMed

McKinney, Bill; Meyer, Peter A; Crosas, Mercè; Sliz, Piotr

2017-01-01

Access to experimental X-ray diffraction image data is important for validation and reproduction of macromolecular models and indispensable for the development of structural biology processing methods. In response to the evolving needs of the structural biology community, we recently established a diffraction data publication system, the Structural Biology Data Grid (SBDG, data.sbgrid.org), to preserve primary experimental datasets supporting scientific publications. All datasets published through the SBDG are freely available to the research community under a public domain dedication license, with metadata compliant with the DataCite Schema (schema.datacite.org). A proof-of-concept study demonstrated community interest and utility. Publication of large datasets is a challenge shared by several fields, and the SBDG has begun collaborating with the Institute for Quantitative Social Science at Harvard University to extend the Dataverse (dataverse.org) open-source data repository system to structural biology datasets. Several extensions are necessary to support the size and metadata requirements for structural biology datasets. In this paper, we describe one such extension-functionality supporting preservation of file system structure within Dataverse-which is essential for both in-place computation and supporting non-HTTP data transfers. © 2016 New York Academy of Sciences.

Exoskeletons of Bougainvilliidae and other Hydroidolina (Cnidaria, Hydrozoa): structure and composition

PubMed Central

Marian, José Eduardo A.R.; Migotto, Alvaro Esteves; Marques, Antonio Carlos

2017-01-01

The exoskeleton is an important source of characters for the taxonomy of Hydroidolina. It originates as epidermal secretions and, among other functions, protects the coenosarc of the polypoid stage. However, comparative studies on the exoskeletal tissue origin, development, chemical, and structural characteristics, as well as its evolution and homology, are few and fragmented. This study compares the structure and composition of the exoskeleton and underlying coenosarc in members of “Anthoathecata” and some Leptothecata, but does so mainly in bougainvilliid polyps histological analyses. We also studied the development of the exoskeleton under experimental conditions. We identified three types of glandular epidermal cells related to the origin of the exoskeleton and the secretion of its polysaccharides component. The exoskeleton of the species studied is either bilayered (perisarc and exosarc, especially in bougainvilliids) or corneous (perisarc). The exoskeleton varies in chemical composition, structural rigidity, thickness, extension, and coverage in the different regions of the colony. In bilayered exoskeletons, the exosarc is produced first and appears to be a key step in the formation of the rigid exoskeleton. The exoskeleton contains anchoring structures such as desmocytes and “perisarc extensions.” PMID:28224050

Social Network Structures among Groundnut Farmers

ERIC Educational Resources Information Center

Thuo, Mary; Bell, Alexandra A.; Bravo-Ureta, Boris E.; Okello, David K.; Okoko, Evelyn Nasambu; Kidula, Nelson L.; Deom, C. Michael; Puppala, Naveen

2013-01-01

Purpose: Groundnut farmers in East Africa have experienced declines in production despite research and extension efforts to increase productivity. This study examined how social network structures related to acquisition of information about new seed varieties and productivity among groundnut farmers in Uganda and Kenya.…

A Taxonomy of Latent Structure Assumptions for Probability Matrix Decomposition Models.

ERIC Educational Resources Information Center

Meulders, Michel; De Boeck, Paul; Van Mechelen, Iven

2003-01-01

Proposed a taxonomy of latent structure assumptions for probability matrix decomposition (PMD) that includes the original PMD model and a three-way extension of the multiple classification latent class model. Simulation study results show the usefulness of the taxonomy. (SLD)

Galois Module Structure of Lubin-Tate Modules

NASA Astrophysics Data System (ADS)

Tomaskovic-Moore, Sebastian

Let L/K be a finite, Galois extension of local or global fields. In the classical setting of additive Galois modules, the ring of integers OL of L is studied as a module for the group ring OKG, where G is the Galois group of L/K. When K is a p-adic field, we also find a structure of OKG module when we replace OL with the group of points in OL of a Lubin-Tate formal group defined over K. For this new Galois module we find an analogue of the normal basis theorem. When K is a proper unramified extension of Qp , we show that some eigenspaces for the Teichmuller character are not free. We also adapt certain cases of E. Noether's result on normal integral bases for tame extensions. Finally, for wild extensions we define a version of Leopoldt's associated order and demonstrate in a specific case that it is strictly larger than the integral group ring.

Testing thin-skinned inversion of a prerift salt-bearing passive margin (Eastern Prebetic Zone, SE Iberia)

NASA Astrophysics Data System (ADS)

Escosa, Frederic O.; Roca, Eduard; Ferrer, Oriol

2018-04-01

Detailed geologic mapping combined with well and seismic data from the Eastern Prebetic Zone (SE Iberia) reveal extensional and contractional structures that permit characterization of passive margin development and its incorporation into a thin-skinned fold-and-thrust belt. The study area is represented by NW-directed, ENE-trending folds and thrusts faults locally disrupted by the NW-trending Matamoros Basin and the active Jumilla and La Rosa diapirs. These structures resulted from the thin-skinned inversion of the proximal part of the Eastern South Iberian passive margin containing prerift salt. Here, Upper Jurassic to Santonian thick-skinned extension controlled the accumulation of sediment over mobile prerift salt. This in turn defined the style of salt tectonics characterized by monoclinal drape folds, suprasalt extensional faults and diapirs. The structural and sedimentological analysis suggests that during extension, salt localizes strain thus decoupling sub- and suprasalt deformation. Thick-skinned extension controls suprasalt deformation as well as its location and distribution which changes over time. Salt also localizes strain during inversion. The preexisting salt structures, weaker than adjacent areas, preferentially absorb the contractional deformation. In addition, the stepped subsalt geometry that results from thick-skinned extension also controls the shortening propagation. Therefore, the degree of strain localization depends on the thickness of the suprasalt cover and on the dip of subsalt faults relative to the thin-skinned transport direction.

Effects of long-term self-massage at the musculotendinous junction on hamstring extensibility, stiffness, stretch tolerance, and structural indices: A randomized controlled trial.

PubMed

Akazawa, Naoki; Okawa, Naomi; Kishi, Masaki; Nakatani, Kiyoshi; Nishikawa, Katsuya; Tokumura, Daichi; Matsui, Yuji; Moriyama, Hideki

2016-09-01

The purpose of this study was to examine the effect of long-term self-massage at the musculotendinous junction on hamstring extensibility, stiffness, stretch tolerance, and structural indices. Single-blind, randomized, controlled trial. Laboratory. Thirty-seven healthy men. The right or left leg of each participant was randomly assigned to the massage group, and the other leg was assigned to the control group. The participants conducted self-massage at the musculotendinous junction for 3 min daily, five times per week, for 12 weeks. Hamstring extensibility, stiffness, stretch tolerance, and structural indices were measured by a blinded examiner prior to the massage intervention and after 6 and 12 weeks of intervention. The maximum hip flexion angle (HFA) and the maximum passive pressure after 6 and 12 weeks of intervention in the massage group were significantly higher than prior to intervention. The visual analog scale (for pain perception) at maximum HFA, the stiffness of the hamstring, and the structural indices did not differ in either group over the 12 week period. Our results suggest that long-term self-massage at the musculotendinous junction increases hamstring extensibility by improving stretch tolerance. However, this intervention does not change hamstring stiffness. University Hospital Medical Information Network registration number UMIN000011233. Copyright © 2016 Elsevier Ltd. All rights reserved.

The Influence of Science Knowledge Structures on Children's Success in Solving Academic Problems.

ERIC Educational Resources Information Center

Champagne, Audrey B.; And Others

Presented is a study of eighth-grade students' academic problem-solving ability based on their knowledge structures, or their information stored in semantic or long-term memory. The authors describe a technique that they developed to probe knowledge structures with an extension of the card-sort method. The method, known as the Concept Structure…

Characterization of local complex structures in a recurrence plot to improve nonlinear dynamic discriminant analysis.

PubMed

Ding, Hang

2014-01-01

Structures in recurrence plots (RPs), preserving the rich information of nonlinear invariants and trajectory characteristics, have been increasingly analyzed in dynamic discrimination studies. The conventional analysis of RPs is mainly focused on quantifying the overall diagonal and vertical line structures through a method, called recurrence quantification analysis (RQA). This study extensively explores the information in RPs by quantifying local complex RP structures. To do this, an approach was developed to analyze the combination of three major RQA variables: determinism, laminarity, and recurrence rate (DLR) in a metawindow moving over a RP. It was then evaluated in two experiments discriminating (1) ideal nonlinear dynamic series emulated from the Lorenz system with different control parameters and (2) data sets of human heart rate regulations with normal sinus rhythms (n = 18) and congestive heart failure (n = 29). Finally, the DLR was compared with seven major RQA variables in terms of discriminatory power, measured by standardized mean difference (DSMD). In the two experiments, DLR resulted in the highest discriminatory power with DSMD = 2.53 and 0.98, respectively, which were 7.41 and 2.09 times the best performance from RQA. The study also revealed that the optimal RP structures for the discriminations were neither typical diagonal structures nor vertical structures. These findings indicate that local complex RP structures contain some rich information unexploited by RQA. Therefore, future research to extensively analyze complex RP structures would potentially improve the effectiveness of the RP analysis in dynamic discrimination studies.

Dynamic Risk Stratification in Stage I Papillary Thyroid Cancer Patients Younger Than 45 Years of Age.

PubMed

Sung, Tae-Yon; Cho, Jae Won; Lee, Yu-Mi; Lee, Yi Ho; Kwon, Hyemi; Jeon, Min Ji; Kim, Won Gu; Choi, Young Jun; Song, Dong Eun; Chung, Ki-Wook; Yoon, Jong Ho; Hong, Suck Joon

2017-11-01

This study validated the dynamic risk stratification (DRS) system with regard to its association with structural recurrence and risk factors associated with non-excellent responses in patients <45 years with stage I classical papillary thyroid cancer (PTC). This historical cohort study included 598 patients with stage I classical PTC <45 years of age treated with total thyroidectomy followed by radioactive iodine remnant ablation (n = 440), total thyroidectomy without radioactive iodine remnant ablation (n = 23), and thyroid lobectomy alone (n = 135). The median follow-up period was 123 months. Structural recurrence occurred in 4.2% (n = 18/432) of the patients with an excellent response, 17.1% (18/105) of patients with an indeterminate response, 44.7% (17/38) of patients with a biochemically incomplete response, and 82.6% (19/23) of patients with a structurally incomplete response (p < 0.001) during the follow-up. The disease-free survival curves of each response showed significant differences (p < 0.001). Extensive extrathyroidal extension and extranodal extension were the independent risk factors associated with non-excellent response (p < 0.05). DRS may reduce unnecessary additional treatments by reclassifying initial risk estimates of structural recurrence. Furthermore, applying the risk factors associated with non-excellent response to initial therapy may be a more useful and viable surrogate of the risk for structural recurrence in stage I PTC patients <45 years of age.

A materials perspective of Martyniaceae fruits: Exploring structural and micromechanical properties.

PubMed

Horbens, Melanie; Eder, Michaela; Neinhuis, Christoph

2015-12-01

Several species of the plant family Martyniaceae are characterised by unique lignified capsules with hook-shaped extensions that interlock with hooves and ankles of large mammals to disperse the seeds. The arrangement of fruit endocarp fibre tissues is exceptional and intriguing among plants. Structure-function-relationships of these slender, curved, but mechanically highly stressed fruit extensions are of particular interest that may inspire advanced biomimetic composite materials. In the present study, we analyse mechanical properties and fracture behaviour of the hook-shaped fruit extensions under different load conditions. The results are correlated with calculated stress distributions, the specific cell wall structure, and chemical composition, providing a detailed interpretation of the complex fruit tissue microstructure. At the cell wall level, both a large microfibril angle and greater strain rates resulted in Young's moduli of 4-9 GPa, leading to structural plasticity. Longitudinally arranged fibre bundles contribute to a great tensile strength. At the tissue level, transversely oriented fibres absorb radial stresses upon bending, whereas cells encompass and pervade longitudinal fibre bundles, thus, stabilise them against buckling. During bending and torsion, microcracks between axial fibre bundles are probably spanned analogous to a circular anchor. Our study fathoms a highly specialized plant structure, substantiating former assumptions about epizoochory as dispersal mode. While the increased flexibility allows for proper attachment of fruits during dynamical locomotion, the high strength and stability prevent a premature failure due to heavy loads exerted by the animal. Copyright © 2015 Acta Materialia Inc. Published by Elsevier Ltd. All rights reserved.

Structure constrained by metadata in networks of chess players.

PubMed

Almeira, Nahuel; Schaigorodsky, Ana L; Perotti, Juan I; Billoni, Orlando V

2017-11-09

Chess is an emblematic sport that stands out because of its age, popularity and complexity. It has served to study human behavior from the perspective of a wide number of disciplines, from cognitive skills such as memory and learning, to aspects like innovation and decision-making. Given that an extensive documentation of chess games played throughout history is available, it is possible to perform detailed and statistically significant studies about this sport. Here we use one of the most extensive chess databases in the world to construct two networks of chess players. One of the networks includes games that were played over-the-board and the other contains games played on the Internet. We study the main topological characteristics of the networks, such as degree distribution and correlations, transitivity and community structure. We complement the structural analysis by incorporating players' level of play as node metadata. Although both networks are topologically different, we show that in both cases players gather in communities according to their expertise and that an emergent rich-club structure, composed by the top-rated players, is also present.

Structural conservation, variability, and immunogenicity of the T6 backbone pilin of serotype M6 Streptococcus pyogenes.

PubMed

Young, Paul G; Moreland, Nicole J; Loh, Jacelyn M; Bell, Anita; Atatoa Carr, Polly; Proft, Thomas; Baker, Edward N

2014-07-01

Group A streptococcus (GAS; Streptococcus pyogenes) is a Gram-positive human pathogen that causes a broad range of diseases ranging from acute pharyngitis to the poststreptococcal sequelae of acute rheumatic fever. GAS pili are highly diverse, long protein polymers that extend from the cell surface. They have multiple roles in infection and are promising candidates for vaccine development. This study describes the structure of the T6 backbone pilin (BP; Lancefield T-antigen) from the important M6 serotype. The structure reveals a modular arrangement of three tandem immunoglobulin-like domains, two with internal isopeptide bonds. The T6 pilin lysine, essential for polymerization, is located in a novel VAKS motif that is structurally homologous to the canonical YPKN pilin lysine in other three- and four-domain Gram-positive pilins. The T6 structure also highlights a conserved pilin core whose surface is decorated with highly variable loops and extensions. Comparison to other Gram-positive BPs shows that many of the largest variable extensions are found in conserved locations. Studies with sera from patients diagnosed with GAS-associated acute rheumatic fever showed that each of the three T6 domains, and the largest of the variable extensions (V8), are targeted by IgG during infection in vivo. Although the GAS BP show large variations in size and sequence, the modular nature of the pilus proteins revealed by the T6 structure may aid the future design of a pilus-based vaccine. Copyright © 2014, American Society for Microbiology. All Rights Reserved.

Conversational Patterns of Homestay Hosts and Study Abroad Students

ERIC Educational Resources Information Center

Pryde, Michael

2014-01-01

Although the initiation, response, and follow-up (IRF) conversational structure and the initiation, response, evaluation (IRE) structure, commonly termed "triadic dialogue," (Lemke, 1990) have been extensively documented in relation to classroom conversational style, there is little research on their distribution during, and impact on,…

Extension theorems for homogenization on lattice structures

NASA Technical Reports Server (NTRS)

Miller, Robert E.

1992-01-01

When applying homogenization techniques to problems involving lattice structures, it is necessary to extend certain functions defined on a perforated domain to a simply connected domain. This paper provides general extension operators which preserve bounds on derivatives of order l. Only the special case of honeycomb structures is considered.

Upper mantle structure at Walvis Ridge from Pn tomography

NASA Astrophysics Data System (ADS)

Ryberg, Trond; Braeuer, Benjamin; Weber, Michael

2017-10-01

Passive continental margins offer the unique opportunity to study the processes involved in continental extension and break-up. Within the LISPWAL (LIthospheric Structure of the Namibian continental Passive margin at the intersection with the Walvis Ridge from amphibious seismic investigations) project, combined on- and offshore seismic experiments were designed to characterize the Southern African passive margin at the Walvis Ridge in northern Namibia. In addition to extensive analysis of the crustal structures, we carried out seismic investigations targeting the velocity structure of the upper mantle in the landfall region of the Walvis Ridge with the Namibian coast. Upper mantle Pn travel time tomography from controlled source, amphibious seismic data was used to investigate the sub-Moho upper mantle seismic velocity. We succeeded in imaging upper mantle structures potentially associated with continental break-up and/or the Tristan da Cunha hotspot track. We found mostly coast-parallel sub-Moho velocity anomalies, interpreted as structures which were created during Gondwana break-up.

Extensive structural change of the envelope protein of dengue virus induced by a tuned ionic strength: conformational and energetic analyses

NASA Astrophysics Data System (ADS)

Degrève, Léo; Fuzo, Carlos A.; Caliri, Antonio

2012-12-01

The Dengue has become a global public health threat, with over 100 million infections annually; to date there is no specific vaccine or any antiviral drug. The structures of the envelope (E) proteins of the four known serotype of the dengue virus (DENV) are already known, but there are insufficient molecular details of their structural behavior in solution in the distinct environmental conditions in which the DENVs are submitted, from the digestive tract of the mosquito up to its replication inside the host cell. Such detailed knowledge becomes important because of the multifunctional character of the E protein: it mediates the early events in cell entry, via receptor endocytosis and, as a class II protein, participates determinately in the process of membrane fusion. The proposed infection mechanism asserts that once in the endosome, at low pH, the E homodimers dissociate and insert into the endosomal lipid membrane, after an extensive conformational change, mainly on the relative arrangement of its three domains. In this work we employ all-atom explicit solvent Molecular Dynamics simulations to specify the thermodynamic conditions in that the E proteins are induced to experience extensive structural changes, such as during the process of reducing pH. We study the structural behavior of the E protein monomer at acid pH solution of distinct ionic strength. Extensive simulations are carried out with all the histidine residues in its full protonated form at four distinct ionic strengths. The results are analyzed in detail from structural and energetic perspectives, and the virtual protein movements are described by means of the principal component analyses. As the main result, we found that at acid pH and physiological ionic strength, the E protein suffers a major structural change; for lower or higher ionic strengths, the crystal structure is essentially maintained along of all extensive simulations. On the other hand, at basic pH, when all histidine residues are in the unprotonated form, the protein structure is very stable for ionic strengths ranging from 0 to 225 mM. Therefore, our findings support the hypothesis that the histidines constitute the hot points that induce configurational changes of E protein in acid pH, and give extra motivation to the development of new ideas for antivirus compound design.

Effects of Oblique Extension and Inherited Structure Geometry on Transfer Zone Development in Continental Rifts: A 4D Analogue Modeling Approach

NASA Astrophysics Data System (ADS)

Zwaan, Frank; Schreurs, Guido

2015-04-01

INTRODUCTION Inherited structures in the crust form weak zones along which deformation will focus during rifting. Along-strike connection of rift segments may occur along transfer zones, as observed in East Africa. Previous studies have focused on numerical and analog modeling of transfer zones (e.g. Acocella et al., 1999, Allken et al., 2012). We elaborate upon those by investigating the effects of 1) oblique extension and 2) the geometry of linked and non-linked inherited structures on the development of transfer zones. A further improvement is the use of X-ray Computer Tomography (CT) for detailed internal analysis. METHODS The experimental set-up (see Schreurs & Colleta, 1998) contains two sidewalls with a base of compressed foam and plexiglass bars stacked in between. Decompressing this base results in distributed deformation of the overlying model materials. Deforming the model laterally with a mobile base plate produces the strike-slip components for oblique extension. Divergence velocities are in the order of 5 mm/h, translating to ca. 5 mm/Ma in nature, and 1 cm represents 10 km. A 2 cm thick layer of viscous silicone represents the ductile lower crust and a 2 cm quartz sand layer the brittle upper crust. Inherited structures are created with thin lines of silicon laid down on top of the basal silicone layer. Several models were run in a CT-scanner to reveal the 3D evolution of internal structures with time, hence 4D. RESULTS Localization of deformation along the pre-defined structures works well. The models show that the structural style changes with extension obliquity, from wide rift structures to narrower rifts with internal oblique-slip and finally strike-slip structures. Furthermore, rift offset is an important parameter influencing the occurrence of linkage: increasing rift offset decreases linkage as previously observed by Allken et al. (2012). However, increasing divergence obliquity promotes transfer zone formation, as does the presence of rift-connecting inherited zones, whose strike is at an angle of >15° with respect to the divergence direction. CT-analysis indicates that faulting initiated shortly after the start of the experiments, while structures become only clearly visible at the surface only after 1:30h (4% extension). Rift boundary fault angles tend to decrease from an initial 70° to ca. 55° after 4:00h (10% extension). Further CT-analysis will reveal the 3D evolution of the transform zones in more detail. REFERENCES Acocella, V., Faccenna, C., Funiciello, R., Rossetti, F., 1999. Sand-box modelling of basement-controlled transfer zones in extensional domains. Terra Nova, Vol. 11, No. 4, pp 149-156 Allken, V., Huismans, R. S., Thieulot, C., 2012. Factors controlling the mode of rift interaction in brittle-ductile coupled systems: A 3D numerical study, Geochem. Geophys. Geosyst. Vol. 13, Q05010 Schreurs, G., Colletta, B. (1998) Analogue modelling of faulting in zones of continental transpression and transtension. In: Holdsworth, R. E., Strachan R. A., Dewey, J. F., (eds.) 1998. Continental Transpressional and Transtensional Tectonics. Geological Society, London, Special Publications. No. 135, pp 59-79

The exponentiated Hencky energy: anisotropic extension and case studies

NASA Astrophysics Data System (ADS)

Schröder, Jörg; von Hoegen, Markus; Neff, Patrizio

2017-10-01

In this paper we propose an anisotropic extension of the isotropic exponentiated Hencky energy, based on logarithmic strain invariants. Unlike other elastic formulations, the isotropic exponentiated Hencky elastic energy has been derived solely on differential geometric grounds, involving the geodesic distance of the deformation gradient \\varvec{F} to the group of rotations. We formally extend this approach towards anisotropy by defining additional anisotropic logarithmic strain invariants with the help of suitable structural tensors and consider our findings for selected case studies.

How Tracking Structures Attitudes towards Ethnic Out-Groups and Interethnic Interactions in the Classroom: An Ethnographic Study in Belgium

ERIC Educational Resources Information Center

Van Praag, Lore; Boone, Simon; Stevens, Peter A. J.; Van Houtte, Mieke

2015-01-01

The influence of the ethnic composition of schools on interethnic relations and attitudes has been studied extensively and has received ample interest from policy makers. However, less attention has been paid to the structures and processes inside schools that organize interethnic relations and attitudes. In Flanders (Belgium), secondary education…

Visual system plasticity in mammals: the story of monocular enucleation-induced vision loss

PubMed Central

Nys, Julie; Scheyltjens, Isabelle; Arckens, Lutgarde

2015-01-01

The groundbreaking work of Hubel and Wiesel in the 1960’s on ocular dominance plasticity instigated many studies of the visual system of mammals, enriching our understanding of how the development of its structure and function depends on high quality visual input through both eyes. These studies have mainly employed lid suturing, dark rearing and eye patching applied to different species to reduce or impair visual input, and have created extensive knowledge on binocular vision. However, not all aspects and types of plasticity in the visual cortex have been covered in full detail. In that regard, a more drastic deprivation method like enucleation, leading to complete vision loss appears useful as it has more widespread effects on the afferent visual pathway and even on non-visual brain regions. One-eyed vision due to monocular enucleation (ME) profoundly affects the contralateral retinorecipient subcortical and cortical structures thereby creating a powerful means to investigate cortical plasticity phenomena in which binocular competition has no vote.In this review, we will present current knowledge about the specific application of ME as an experimental tool to study visual and cross-modal brain plasticity and compare early postnatal stages up into adulthood. The structural and physiological consequences of this type of extensive sensory loss as documented and studied in several animal species and human patients will be discussed. We will summarize how ME studies have been instrumental to our current understanding of the differentiation of sensory systems and how the structure and function of cortical circuits in mammals are shaped in response to such an extensive alteration in experience. In conclusion, we will highlight future perspectives and the clinical relevance of adding ME to the list of more longstanding deprivation models in visual system research. PMID:25972788

Agricultural Extension: Farm Extension Services in Australia, Britain and the United States.

ERIC Educational Resources Information Center

Williams, Donald B.

By analyzing the scope and structure of agricultural extension services in Australia, Great Britain, and the United States, this work attempts to set guidelines for measuring progress and guiding extension efforts. Extension training, agricultural policy, and activities of national, international, state, and provincial bodies are examined. The…

Recent results on the cluster structure of light nuclei

NASA Astrophysics Data System (ADS)

Iachello, F.

2017-06-01

A recently developed model (ACM) is introduced and applied to the study of kα structures with k=2 (8Be ), k=3 (12C) and k=4 (16O). Evidence for Z2 (k=2), D3 (k=3) and Td (k=4) symmetry is presented. An extension (ACFM) of the model to kα+x(neutrons, protons) structures is briefly mentioned and applied to the study of9Be (k=2,x=1).

Vectorization with SIMD extensions speeds up reconstruction in electron tomography.

PubMed

Agulleiro, J I; Garzón, E M; García, I; Fernández, J J

2010-06-01

Electron tomography allows structural studies of cellular structures at molecular detail. Large 3D reconstructions are needed to meet the resolution requirements. The processing time to compute these large volumes may be considerable and so, high performance computing techniques have been used traditionally. This work presents a vector approach to tomographic reconstruction that relies on the exploitation of the SIMD extensions available in modern processors in combination to other single processor optimization techniques. This approach succeeds in producing full resolution tomograms with an important reduction in processing time, as evaluated with the most common reconstruction algorithms, namely WBP and SIRT. The main advantage stems from the fact that this approach is to be run on standard computers without the need of specialized hardware, which facilitates the development, use and management of programs. Future trends in processor design open excellent opportunities for vector processing with processor's SIMD extensions in the field of 3D electron microscopy.

Correspondence

PubMed Central

Almli, Lynn M.; Srivastava, Amita; Fani, Negar; Kerley, Kimberly; Mercer, Kristina B.; Feng, Hao; Bradley, Bekh; Ressler, Kerry J.

2014-01-01

Follow-up and Extension of a Prior Genome-wide Association Study of Posttraumatic Stress Disorder: Gene × Environment Associations and Structural Magnetic Resonance Imaging in a Highly Traumatized African-American Civilian Population PMID:24576688

Arc-parallel extension and fluid flow in an ancient accretionary wedge: The San Juan Islands, Washington

USGS Publications Warehouse

Schermer, Elizabeth R.; Gillaspy, J.R.; Lamb, R.

2007-01-01

Structural analysis of the Lopez Structural Complex, a major Late Cretaceous terrane-bounding fault zone in the San Juan thrust system, reveals a sequence of events that provides insight into accretionary wedge mechanics and regional tectonics. After formation of regional ductile flattening and shear-related fabrics, the area was crosscut by brittle structures including: (1) southwest-vergent thrusts, (2) extension veins and normal faults related to northwest-southeast extension, and (3) conjugate strike-slip structures that record northwest-southeast extension and northeast-southwest shortening. Aragonite-bearing veins are associated with thrust and normal faults, but only rarely with strike-slip faults. High-pressure, low-temperature (HP-LT) minerals constrain the conditions for brittle deformation to ???20 km and <250 ??C. The presence of similar structures elsewhere indicates that the brittle structural sequence is typical of the San Juan nappes. Sustained HP-LT conditions are possible only if structures formed in an accretionary prism during active subduction, which suggests that these brittle structures record internal wedge deformation at depth and early during uplift of the San Juan nappes. The structures are consistent with orogen-normal shortening and vertical thickening followed by vertical thinning and along-strike extension. The kinematic evolution may be related initially to changes in wedge strength, followed by response to overthickening of the wedge in an unbuttressed, obliquely convergent setting. The change in vein mineralogy indicates that exhumation occurred prior to the strike-slip event. The pressure and temperature conditions and spatial and temporal extent of small faults associated with fluid flow suggest a link between these structures and the silent earthquake process. ?? 2007 Geological Society of America.

Standardization of doctoral study in agricultural and extension education: is the field of study mature enough for achievement of the optimum degree of order?

PubMed

Briers, G E; Lindner, J R; Shinn, G C; Wingenbach, G W; Baker, M T

2010-01-01

Agricultural and extension education--or some derivative name--is a field of study leading to the doctoral degree in universities around the world. Is there are body of knowledge or a taxonomy of the knowledge--e.g., a knowledge domain--that one should possess with a doctorate in agricultural and extension education? The purpose of this paper was to synthesize the work of researchers who attempted to define the field of study, with a taxonomy comprising the knowledge domains (standards) and knowledge objects--structured interrelated sets of data, knowledge, and wisdom--of the field of study. Doctoral study in agricultural and extension education needs a document that provides for rules and guidelines--rules and guidelines that in turn provide for common and repeated use--all leading to achievement of an optimum degree of order in the context of academic, scholarly, and professional practice in agricultural and extension education. Thus, one would know in broad categories the knowledge, skills, and abilities possessed by one who holds a doctoral degree in agricultural and extension education. That is, there would exist a standard for doctoral degrees in agricultural and extension education. A content analysis of three previous attempts to categorize knowledge in agricultural and extension education served as the primary technique to create a new taxonomy--or to confirm an existing taxonomy--for doctoral study in agricultural and extension education. The following coalesced as nine essential knowledge domains for a doctorate in agricultural and extension education: (1) history, philosophy, ethics, and policy; (2) agricultural/rural development; (3) organizational development and change management; (4) planning, needs assessment, and evaluation; (5) learning theory; (6) curriculum development and instructional design; (7) teaching methods and delivery strategies; (8) research methods and tools; and, (9) scholarship and communications.

Population genetic signatures of a climate change driven marine range extension.

PubMed

Ramos, Jorge E; Pecl, Gretta T; Moltschaniwskyj, Natalie A; Semmens, Jayson M; Souza, Carla A; Strugnell, Jan M

2018-06-22

Shifts in species distribution, or 'range shifts', are one of the most commonly documented responses to ocean warming, with important consequences for the function and structure of ecosystems, and for socio-economic activities. Understanding the genetic signatures of range shifts can help build our knowledge of the capacity of species to establish and persist in colonised areas. Here, seven microsatellite loci were used to examine the population connectivity, genetic structure and diversity of Octopus tetricus, which has extended its distribution several hundred kilometres polewards associated with the southwards extension of the warm East Australian Current along south-eastern Australia. The historical distribution and the range extension zones had significant genetic differences but levels of genetic diversity were comparable. The population in the range extension zone was sub-structured, contained relatively high levels of self-recruitment and was sourced by migrants from along the entire geographic distribution. Genetic bottlenecks and changes in population size were detected throughout the range extension axis. Persistent gene flow from throughout the historical zone and moderate genetic diversity may buffer the genetic bottlenecks and favour the range extension of O. tetricus. These characteristics may aid adaptation, establishment, and long-term persistence of the population in the range extension zone.

Expanding the Described Metabolome of the Marine Cyanobacterium Moorea producens JHB through Orthogonal Natural Products Workflows

PubMed Central

Boudreau, Paul D.; Monroe, Emily A.; Mehrotra, Suneet; Desfor, Shane; Korobeynikov, Anton; Sherman, David H.; Murray, Thomas F.; Gerwick, Lena; Dorrestein, Pieter C.; Gerwick, William H.

2015-01-01

Moorea producens JHB, a Jamaican strain of tropical filamentous marine cyanobacteria, has been extensively studied by traditional natural products techniques. These previous bioassay and structure guided isolations led to the discovery of two exciting classes of natural products, hectochlorin (1) and jamaicamides A (2) and B (3). In the current study, mass spectrometry-based ‘molecular networking’ was used to visualize the metabolome of Moorea producens JHB, and both guided and enhanced the isolation workflow, revealing additional metabolites in these compound classes. Further, we developed additional insight into the metabolic capabilities of this strain by genome sequencing analysis, which subsequently led to the isolation of a compound unrelated to the jamaicamide and hectochlorin families. Another approach involved stimulation of the biosynthesis of a minor jamaicamide metabolite by cultivation in modified media, and provided insights about the underlying biosynthetic machinery as well as preliminary structure-activity information within this structure class. This study demonstrated that these orthogonal approaches are complementary and enrich secondary metabolomic coverage even in an extensively studied bacterial strain. PMID:26222584

Balancing sub- and supra-salt strain in salt-influenced rifts: Implications for extension estimates

NASA Astrophysics Data System (ADS)

Coleman, Alexander J.; Jackson, Christopher A.-L.; Duffy, Oliver B.

2017-09-01

The structural style of salt-influenced rifts may differ from those formed in predominantly brittle crust. Salt can decouple sub- and supra-salt strain, causing sub-salt faults to be geometrically decoupled from, but kinematically coupled to and responsible for, supra-salt forced folding. Salt-influenced rifts thus contain more folds than their brittle counterparts, an observation often ignored in extension estimates. Fundamental to determining whether sub- and supra-salt structures are kinematically coherent, and the relative contributions of thin- (i.e. gravity-driven) and thick-skinned (i.e. whole-plate stretching) deformation to accommodating rift-related strain, is our ability to measure extension at both structural levels. We here use published physical models of salt-influenced extension to show that line-length estimates yield more accurate values of sub- and supra-salt extension compared to fault-heave, before applying these methods to seismic data from the Halten Terrace, offshore Norway. We show that, given the abundance of ductile deformation in salt-influenced rifts, significant amounts of extension may be ignored, leading to the erroneous interpretations of thin-skinned, gravity-gliding. If a system is kinematically coherent, supra-salt structures can help predict the occurrence and kinematics of sub-salt faults that may be poorly imaged and otherwise poorly constrained.

Non-3D domain swapped crystal structure of truncated zebrafish alphaA crystallin

PubMed Central

Laganowsky, A; Eisenberg, D

2010-01-01

In previous work on truncated alpha crystallins (Laganowsky et al., Protein Sci 2010; 19:1031–1043), we determined crystal structures of the alpha crystallin core, a seven beta-stranded immunoglobulin-like domain, with its conserved C-terminal extension. These extensions swap into neighboring cores forming oligomeric assemblies. The extension is palindromic in sequence, binding in either of two directions. Here, we report the crystal structure of a truncated alphaA crystallin (AAC) from zebrafish (Danio rerio) revealing C-terminal extensions in a non three-dimensional (3D) domain swapped, “closed” state. The extension is quasi-palindromic, bound within its own zebrafish core domain, lying in the opposite direction to that of bovine AAC, which is bound within an adjacent core domain (Laganowsky et al., Protein Sci 2010; 19:1031–1043). Our findings establish that the C-terminal extension of alpha crystallin proteins can be either 3D domain swapped or non-3D domain swapped. This duality provides another molecular mechanism for alpha crystallin proteins to maintain the polydispersity that is crucial for eye lens transparency. PMID:20669149

Flexural waves induced by electro-impulse deicing forces

NASA Technical Reports Server (NTRS)

Gien, P. H.

1990-01-01

The generation, reflection and propagation of flexural waves created by electroimpulsive deicing forces are demonstrated both experimentally and analytically in a thin circular plate and a thin semicylindrical shell. Analytical prediction of these waves with finite element models shows good correlation with acceleration and displacement measurements at discrete points on the structures studied. However, sensitivity to spurious flexural waves resulting from the spatial discretization of the structures is shown to be significant. Consideration is also given to composite structures as an extension of these studies.

The Structural Properties of Sexual Fantasies for Sexual Offenders: A Preliminary Model

ERIC Educational Resources Information Center

Gee, Dion; Ward, Tony; Belofastov, Aleksandra; Beech, Anthony

2006-01-01

While the phenomenon of sexual fantasy has been researched extensively, little contemporary inquiry has investigated the structural properties of sexual fantasy within the context of sexual offending. In this study, a qualitative analysis was used to develop a descriptive model of the phenomena of sexual fantasy during the offence process.…

Axiomatic Evaluation Method and Content Structure for Information Appliances

ERIC Educational Resources Information Center

Guo, Yinni

2010-01-01

Extensive studies have been conducted to determine how best to present information in order to enhance usability, but not what information is needed to be presented for effective decision making. Hence, this dissertation addresses the factor structure of the nature of information needed for presentation and proposes a more effective method than…

Detangling the Interrelationships between Self- Regulation and Ill-Structured Problem Solving in Problem-Based Learning

ERIC Educational Resources Information Center

Ge, Xun; Law, Victor; Huang, Kun

2016-01-01

One of the goals for problem-based learning (PBL) is to promote self-regulation. Although self-regulation has been studied extensively, its interrelationships with ill-structured problem solving have been unclear. In order to clarify the interrelationships, this article proposes a conceptual framework illustrating the iterative processes among…

Development of high quality pervious concrete specifications for Maryland conditions : [research summary].

DOT National Transportation Integrated Search

2013-02-01

The main objective of the study was to develop preliminary specifications for : high quality pervious concrete suitable for use in SHA projects. The study : included an extensive literature review and laboratory investigations to : determine structur...

Large-scale shell-model study of the Sn isotopes

NASA Astrophysics Data System (ADS)

Osnes, Eivind; Engeland, Torgeir; Hjorth-Jensen, Morten

2015-05-01

We summarize the results of an extensive study of the structure of the Sn isotopes using a large shell-model space and effective interactions evaluated from realistic two-nucleon potentials. For a fuller account, see ref. [1].

Trade study plan for Graphite Composite Primary Structure (GCPS)

NASA Technical Reports Server (NTRS)

Greenberg, H. S.

1994-01-01

This TA 2 document (with support from TA 1) describes the trade study plan that will identify the most suitable structural configuration for an SSTO winged vehicle capable of delivering 25,000 lbs to a 220 nm circular orbit at 51.6 degree inclination For this most suitable configuration the structural attachment of the wing, and the most suitable GCPS composite materials for intertank, wing, tail and thrust structure are identified. This trade study analysis uses extensive information derived in the TA 1 trade study plan and is identified within the study plan. In view of this, for convenience, the TA 1 study plan is included as an appendix to this document.

From orogenic buildup to extensional unroofing: the evolution of the Adria - Europe collisional zone in the Medvednica Mountains of Croatia

NASA Astrophysics Data System (ADS)

Beniest, Anouk; van Gelder, Inge; Matenco, Liviu; Willingshofer, Ernst; Gruic, Andrea; Tomljenovic, Bruno

2013-04-01

Quantifying the kinematics of the Miocene extension in the Pannonian Basin is of critical importance for understanding the evolution of Adria-Europe collision in particular in the transitional zone from the Alps (Adria the upper plate) to the Dinarides (Adria the lower plate). Recent studies have demonstrated that large-scale extensional unroofing and core-complex formation affected the Europe-Adria contact in the Dinarides during Miocene times. The relationship between this extensional exhumation of Adriatic units and the roughly coeval Miocene extension affecting the Alpine-derived units during their E-ward extrusion into the intra-Carpathians ALCAPA block and the formation of the Pannonian basin is still unknown. One key area situated in the transitional zone is the Medvednica Mountains of Croatia, an area that benefits from already existing and extensive petrological and structural studies. The area of the Medvednica Mountains has been targeted by the means of a field kinematic analysis complemented by low-temperature thermochronology, metamorphic petrology and sedimentological observations. The results demonstrate that two units, reflecting distinct Adriatic paleogeographical positions, make up the structural geometry of the mountains. The upper unit contains Paleozoic mostly fine clastic sequence metamorphosed in sub-greenschist facies, overlain by a proximal Adriatic facies consisting of Triassic shallow water carbonates. The lower unit is made up by a volcanic sequence overlain by gradual deepening Triassic carbonates metamorphosed in greenschist facies that bears a strong resemblance to the Triassic break-up volcanism and subsequent sedimentation affecting the distal Adriatic units observed elsewhere in the Jadar-Kopaonik unit of the Dinarides. The strong contrast between the Middle-Upper Triassic facies suggests large scale thrusting during Cretaceous nappe stacking. Subsequently, the studied area has been affected by significant extensional deformation creating the present-day turtleback geometry. This resulted in the formation of brittle normal faults in both units, locally tilted by the uplift of the mountain core, which indicate mostly NE-SW extension. The lower unit is affected by a pervasive deformation characterized by a wide mylonitic shear zone with stretching lineations indicating consistently top-NE to E sense of shear. The present-day structural geometry of the mountains was established during the Pliocene-Quaternary inversion. The exact ages of nappe-stacking and subsequent extensional exhumation will be clarified by the upcoming low-temperature thermochronology and absolute age dating study. However, available results demonstrate that the extensional geometry and sense of shear is typical for the Miocene extensional exhumation and basin formation that affected the Adria-Europe contact elsewhere in the Dinarids, e.g. Kozara-Prosara-Motajica and Fruska Gora extensional structures. By comparing similar extensional features observed in for instance the Rechnitz and Pohorje extensional structures, the combined study potentially demonstrates that the Miocene mechanism of extension and sense of shear is structurally coherent at the scale of the entire Dinaridic and Alpine margins.

Sedimentary record and structural analysis of the opening of the European Cenozoic Rift System: The case of the Upper Rhine Graben

NASA Astrophysics Data System (ADS)

Briais, Justine; Lasseur, Eric; Homberg, Catherine; Beccaletto, Laurent; Couëffé, Renaud; Bellahsen, Nicolas; Chateauneuf, Jean-Jacques

2017-04-01

The European Cenozoic Rift System (ECRIS) attests to an intracontinental rifting period attributed to the late Eocene-Oligocene period of time. The opening mechanisms of ECRIS still remain discussed, mainly because they took place during the regional compressive period related to the Africa-Eurasia convergence. Several geodynamic-related mechanisms are proposed, such as (1) a mantle activity, (2) an extension of the European plate related to the Alpine subduction (slab pull or slab roll-back), (3) a transtension related to strike slips induced by the Iberia-Eurasia and Apulia-Eurasia convergences. Our study discusses the mechanism for opening the Upper Rhine Graben (URG), located in the middle part of the ECRIS. Using reprocessed seismic lines and well data, we carried out a detailed sedimentary infilling analysis coupled with a structural study of the graben and its borders. As a result, three steps are identified for its tectonic evolution: (1) Lutetian-Bartonian: the first step of the opening is recorded by small lacustrine basins bounded by N060- and N010-020-trending inherited normal faults. These basins open either by transtension in a NS compressive context, or by NW-SE extension. (2) Priabonian-Rupelian: the subsidence occurs at a wider scale; the geographic extension of the basin is larger than the current borders of the URG. The structure is controlled essentially by N010-20-trending normal faults and by N060-trending transfer faults. Three structural blocks, bounded by N060-trending transfer faults, are identified from north to south. Each structural block displays an E-W sedimentary filling asymmetry. This period records an NW-SE extension. (3) Chattian-Miocene: the tectonic activity increases and a large-scale strike slip (sinistral) system takes place. This sinistral strike slip is contemporaneous with an uplift of the southern part of the URG and a rapid subsidence of its northern part. These events are related to compressive alpine constraints. During the syn-rift period, the tectonic activity and the amplitude of the vertical movements are low compared to those of the post-rift period. Finally, the NW-SE extension is in the same axis as the NW-SE compressive alpine constraints, likely indicating a direct relation with the alpine dynamic.

Peripheral structures of the Rio Grande Rift in the Sangre de Cristo Mountains, around the Colorado-New Mexico border

NASA Astrophysics Data System (ADS)

Fridrich, C. J.; Workman, J. B.

2009-12-01

Recently active faults of the Rio Grande rift near the Colorado-New Mexico border are almost entirely limited to the San Luis basin. In contrast, the early (≈26 to ≈10 Ma) structure of the rift in this area is significantly broader. A wide zone of abandoned, peripheral extensional structures is exposed on the eastern flank of the San Luis basin—in the west half of the Sangre de Cristo Mountains, known in this area as the southern Culebra and northern Taos Ranges. New detailed mapping shows that the eastern limit of the zone of early peripheral extension is marked by an aligned series of north-trending grabens, including the Devil’s Park, Valle Vidal, and Moreno Valley basins. Master faults of these intermontaine basins are partly localized along, and evidently reactivated moderate- to high-angle Laramide (≈70 to ≈40 Ma) reverse faults of the Sangre de Cristo Mountains. Between these grabens and the San Luis basin lies a structural zone that varies in style from block faulting, in the north, to more closely spaced tilted-domino-style faulting in the Latir volcanic field, to the south. Additional early rift structures include several long northwest-striking faults, the largest of which are interpreted to have accommodated significant right-lateral strike-slip, based on abrupt southwestward increase in the magnitude of extension across them. These faults evidently transferred strain from the axial part of the rift into the zone of early peripheral extension, and accommodated lateral changes in structural style. Throughout the area of early peripheral extension, there is a correlation between the magnitude of local volcanism and the degree of extension; however, it is unclear if extension drove volcanism—via mantle upwelling, or if extension was maximized where the crust was weakest, owing to the presence of magma and hot rock at shallow depths.

Options in Extraterrestrial Sample Handling and Study

NASA Technical Reports Server (NTRS)

Papanastassiou, Dimitri A.

2000-01-01

This presentation mentions important service functions such as: sample preservation, hazard assessment, and handling. It also discuss how preliminary examination of samples is necessary for sample hazard assessment and for sample allocations. Clean facilities and clean sample handling are required. Conflicts, cross contamination issues will be present and need to be resolved. Extensive experience is available for extraterrestrial samples and must be sought and applied. Extensive experience is available in studies of pathogenicity and must be sought and applied as necessary. Advisory and oversight structures must also be in place

Structural communication between the chromophore-binding pocket and the N-terminal extension in plant phytochrome phyB.

PubMed

Velázquez Escobar, Francisco; Buhrke, David; Fernandez Lopez, Maria; Shenkutie, Sintayehu Manaye; von Horsten, Silke; Essen, Lars-Oliver; Hughes, Jon; Hildebrandt, Peter

2017-05-01

The N-terminal extension (NTE) of plant phytochromes has been suggested to play a functional role in signaling photoinduced structural changes. Here, we use resonance Raman spectroscopy to study the effect of the NTE on the chromophore structure of B-type phytochromes from two evolutionarily distant plants. NTE deletion seems to have no effect on the chromophore in the inactive Pr state, but alters the torsion of the C-D ring methine bridge and the surrounding hydrogen bonding network in the physiologically active Pfr state. These changes are accompanied by a shift of the conformational equilibrium between two Pfr substates, which might affect the thermal isomerization rate of the C-D double bond and, thus, account for the effect of the NTE on the dark reversion kinetics. © 2017 Federation of European Biochemical Societies.

Influences of posterior-located center of gravity on lumbar extension strength, balance, and lumbar lordosis in chronic low back pain.

PubMed

Kim, Dae-Hun; Park, Jin-Kyu; Jeong, Myeong-Kyun

2014-01-01

In patients with chronic low back pain, the center of gravity (COG) is abnormally located posterior to the center in most cases. The purpose of this study was to examine the effects of posterior-located COG on the functions (lumbar extension strength, and static and dynamic balance) and structure (lumbar lordosis angle and lumbosacral angle) of the lumbar spine. In this study, the COG of chronic low back pain patients who complained of only low back pain were examined using dynamic body balance equipment. A total of 164 subjects participated in the study (74 males and 90 females), and they were divided into two groups of 82 patients each. One group (n=82) consisted of patients whose COG was located at the center (C-COG); the other group (n=82) consisted of patients whose COG was located posterior to the center (P-COG). The following measures assessed the lumber functions and structures of the two groups: lumbar extension strength, moving speed of static and dynamic COGs, movement distance of the static and dynamic COGs, lumbar lordosis angle, and lumbosacral angle. The measured values were analyzed using independent t-tests. The group of patients with P-COG showed more decreases in lumbar extension strength, lumbar lordosis angle, and lumbosacral angle compared to the group of patients with C-COG. Also this group showed increases in moving speed and movement distance of the static COG. However, there were no differences in moving speed and movement distance of the dynamic COG between the two groups. These findings suggest that chronic LBP patients with P-COG have some disadvantages to establish lumbar extension strength and static and dynamic balance, which require specific efforts to maintain a neutral position and to control posture.

The structure of S . lividans acetoacetyl-CoA synthetase shows a novel interaction between the C-terminal extension and the N-terminal domain

DOE PAGES

Mitchell, Carter A.; Tucker, Alex C.; Escalante-Semerena, Jorge C.; ...

2014-12-09

The adenosine monoposphate-forming acyl-CoA synthetase enzymes catalyze a two-step reaction that involves the initial formation of an acyl adenylate that reacts in a second partial reaction to form a thioester between the acyl substrate and CoA. These enzymes utilize a Domain Alternation catalytic mechanism, whereby a ~110 residue C-terminal domain rotates by 140° to form distinct catalytic conformations for the two partial reactions. In this paper, the structure of an acetoacetyl-CoA synthetase (AacS) is presented that illustrates a novel aspect of this C-terminal domain. Specifically, several acetyl- and acetoacetyl-CoA synthetases contain a 30-residue extension on the C-terminus compared to othermore » members of this family. Finally, whereas residues from this extension are disordered in prior structures, the AacS structure shows that residues from this extension may interact with key catalytic residues from the N-terminal domain.« less

Synthesis, base pairing and structure studies of geranylated RNA

PubMed Central

Wang, Rui; Vangaveti, Sweta; Ranganathan, Srivathsan V.; Basanta-Sanchez, Maria; Haruehanroengra, Phensinee; Chen, Alan; Sheng, Jia

2016-01-01

Natural RNAs utilize extensive chemical modifications to diversify their structures and functions. 2-Thiouridine geranylation is a special hydrophobic tRNA modification that has been discovered very recently in several bacteria, such as Escherichia coli, Enterobacter aerogenes, Pseudomonas aeruginosa and Salmonella Typhimurium. The geranylated residues are located in the first anticodon position of tRNAs specific for lysine, glutamine and glutamic acid. This big hydrophobic terpene functional group affects the codon recognition patterns and reduces frameshifting errors during translation. We aimed to systematically study the structure, function and biosynthesis mechanism of this geranylation pathway, as well as answer the question of why nature uses such a hydrophobic modification in hydrophilic RNA systems. Recently, we have synthesized the deoxy-analog of S-geranyluridine and showed the geranylated T-G pair is much stronger than the geranylated T-A pair and other mismatched pairs in the B-form DNA duplex context, which is consistent with the observation that the geranylated tRNAGluUUC recognizes GAG more efficiently than GAA. In this manuscript we report the synthesis and base pairing specificity studies of geranylated RNA oligos. We also report extensive molecular simulation studies to explore the structural features of the geranyl group in the context of A-form RNA and its effect on codon–anticodon interaction during ribosome binding. PMID:27307604

A water tunnel flow visualization study of the vortex flow structures on the F/A-18 aircraft

NASA Technical Reports Server (NTRS)

Sandlin, Doral R.; Ramirez, Edgar J.

1991-01-01

The vortex flow structures occurring on the F/A-18 aircraft at high angles of attack were studied. A water tunnel was used to gather flow visualization data on the forebody vortex and the wing leading edge extension vortex. The longitudinal location of breakdown of the leading edge vortex was found to be consistently dependent on the angle of attack. Other parameters such as Reynolds number, model scale, and model fidelity had little influence on the overall behavior of the flow structures studied. The lateral location of the forebody vortex system was greatly influenced by changes in the angle of sideslip. Strong interactions can occur between the leading edge extension vortex and the forebody vortex. Close attention was paid to vortex induced flows on various airframe components of the F/A-18. Reynolds number and angle of attack greatly affected the swirling intensity, and therefore the strength of the studied vortices. Water tunnel results on the F/A-18 correlated well with those obtained in similar studies at both full and sub scale levels. The water tunnel can provide, under certain conditions, good simulations of realistic flows in full scale configurations.

Study of pre-seismic kHz EM emissions by means of complex systems

NASA Astrophysics Data System (ADS)

Balasis, Georgios; Papadimitriou, Constantinos; Eftaxias, Konstantinos

2010-05-01

The field of study of complex systems holds that the dynamics of complex systems are founded on universal principles that may used to describe disparate problems ranging from particle physics to economies of societies. A corollary is that transferring ideas and results from investigators in hitherto disparate areas will cross-fertilize and lead to important new results. It is well-known that the Boltzmann-Gibbs statistical mechanics works best in dealing with systems composed of either independent subsystems or interacting via short-range forces, and whose subsystems can access all the available phase space. For systems exhibiting long-range correlations, memory, or fractal properties, non-extensive Tsallis statistical mechanics becomes the most appropriate mathematical framework. As it was mentioned a central property of the magnetic storm, solar flare, and earthquake preparation process is the possible occurrence of coherent large-scale collective with a very rich structure, resulting from the repeated nonlinear interactions among collective with a very rich structure, resulting from the repeated nonlinear interactions among its constituents. Consequently, the non-extensive statistical mechanics is an appropriate regime to investigate universality, if any, in magnetic storm, solar flare, earthquake and pre-failure EM emission occurrence. A model for earthquake dynamics coming from a non-extensive Tsallis formulation, starting from first principles, has been recently introduced. This approach leads to a Gutenberg-Richter type law for the magnitude distribution of earthquakes which provides an excellent fit to seismicities generated in various large geographic areas usually identified as "seismic regions". We examine whether the Gutenberg-Richter law corresponding to a non-extensive Tsallis statistics is able to describe the distribution of amplitude of earthquakes, pre-seismic kHz EM emissions (electromagnetic earthquakes), solar flares, and magnetic storms. The analysis shows that the introduced non-extensive model provides an excellent fit to the experimental data, incorporating the characteristics of universality by means of non-extensive statistics into the extreme events under study.

Precise colocalization of interacting structural and pigmentary elements generates extensive color pattern variation in Phelsuma lizards

PubMed Central

2013-01-01

Background Color traits in animals play crucial roles in thermoregulation, photoprotection, camouflage, and visual communication, and are amenable to objective quantification and modeling. However, the extensive variation in non-melanic pigments and structural colors in squamate reptiles has been largely disregarded. Here, we used an integrated approach to investigate the morphological basis and physical mechanisms generating variation in color traits in tropical day geckos of the genus Phelsuma. Results Combining histology, optics, mass spectrometry, and UV and Raman spectroscopy, we found that the extensive variation in color patterns within and among Phelsuma species is generated by complex interactions between, on the one hand, chromatophores containing yellow/red pteridine pigments and, on the other hand, iridophores producing structural color by constructive interference of light with guanine nanocrystals. More specifically, we show that 1) the hue of the vivid dorsolateral skin is modulated both by variation in geometry of structural, highly ordered narrowband reflectors, and by the presence of yellow pigments, and 2) that the reflectivity of the white belly and of dorsolateral pigmentary red marks, is increased by underlying structural disorganized broadband reflectors. Most importantly, these interactions require precise colocalization of yellow and red chromatophores with different types of iridophores, characterized by ordered and disordered nanocrystals, respectively. We validated these results through numerical simulations combining pigmentary components with a multilayer interferential optical model. Finally, we show that melanophores form dark lateral patterns but do not significantly contribute to variation in blue/green or red coloration, and that changes in the pH or redox state of pigments provide yet another source of color variation in squamates. Conclusions Precisely colocalized interacting pigmentary and structural elements generate extensive variation in lizard color patterns. Our results indicate the need to identify the developmental mechanisms responsible for the control of the size, shape, and orientation of nanocrystals, and the superposition of specific chromatophore types. This study opens up new perspectives on Phelsuma lizards as models in evolutionary developmental biology. PMID:24099066

Thematicity in Applied Linguistics Textbooks: A Comparative Study of Foreword, Introduction and Preface

ERIC Educational Resources Information Center

Jalilifar, Alireza; Montazeri, Ebtesam Abbasi

2017-01-01

While identifying the generic structure of academic introductions has been the focus of extensive research over the last few decades, investigating some, if not all, of the available linguistic resources that realize the identified generic structures seems to have been largely under-focused. In order to shed light on the way that the communicative…

Forest stand structure of the northern spotted owl's foraging habitat.

Treesearch

Malcolm P. North; Jerry F. Franklin; Andrew B. Carey; Eric D. Forsman; Tom Hamer

1999-01-01

Although the spotted owl's close association with old growth has been extensively studied, it more difficult to identify and quantify the abundance of particular stand structures associated with preferred owl foraging sites. Old-growth forests have a suite of characteristics that distinguish them from younger forests but which also make it difficult to isolate...

The Structured Assessment of Violence Risk in Adults with Intellectual Disability: A Systematic Review.

PubMed

Hounsome, J; Whittington, R; Brown, A; Greenhill, B; McGuire, J

2018-01-01

While structured professional judgement approaches to assessing and managing the risk of violence have been extensively examined in mental health/forensic settings, the application of the findings to people with an intellectual disability is less extensively researched and reviewed. This review aimed to assess whether risk assessment tools have adequate predictive validity for violence in adults with an intellectual disability. Standard systematic review methodology was used to identify and synthesize appropriate studies. A total of 14 studies were identified as meeting the inclusion criteria. These studies assessed the predictive validity of 18 different risk assessment tools, mainly in forensic settings. All studies concluded that the tools assessed were successful in predicting violence. Studies were generally of a high quality. There is good quality evidence that risk assessment tools are valid for people with intellectual disability who offend but further research is required to validate tools for use with people with intellectual disability who offend. © 2016 John Wiley & Sons Ltd.

Enhancement of the Feature Extraction Capability in Global Damage Detection Using Wavelet Theory

NASA Technical Reports Server (NTRS)

Saleeb, Atef F.; Ponnaluru, Gopi Krishna

2006-01-01

The main objective of this study is to assess the specific capabilities of the defect energy parameter technique for global damage detection developed by Saleeb and coworkers. The feature extraction is the most important capability in any damage-detection technique. Features are any parameters extracted from the processed measurement data in order to enhance damage detection. The damage feature extraction capability was studied extensively by analyzing various simulation results. The practical significance in structural health monitoring is that the detection at early stages of small-size defects is always desirable. The amount of changes in the structure's response due to these small defects was determined to show the needed level of accuracy in the experimental methods. The arrangement of fine/extensive sensor network to measure required data for the detection is an "unlimited" ability, but there is a difficulty to place extensive number of sensors on a structure. Therefore, an investigation was conducted using the measurements of coarse sensor network. The white and the pink noises, which cover most of the frequency ranges that are typically encountered in the many measuring devices used (e.g., accelerometers, strain gauges, etc.) are added to the displacements to investigate the effect of noisy measurements in the detection technique. The noisy displacements and the noisy damage parameter values are used to study the signal feature reconstruction using wavelets. The enhancement of the feature extraction capability was successfully achieved by the wavelet theory.

Optimal early active mobilisation protocol after extensor tendon repairs in zones V and VI: A systematic review of literature.

PubMed

Collocott, Shirley Jf; Kelly, Edel; Ellis, Richard F

2018-03-01

Early mobilisation protocols after repair of extensor tendons in zone V and VI provide better outcomes than immobilisation protocols. This systematic review investigated different early active mobilisation protocols used after extensor tendon repair in zone V and VI. The purpose was to determine whether any one early active mobilisation protocol provides superior results. An extensive literature search was conducted to identify articles investigating the outcomes of early active mobilisation protocols after extensor tendon repair in zone V and VI. Databases searched were AMED, Embase, Medline, Cochrane and CINAHL. Studies were included if they involved participants with extensor tendon repairs in zone V and VI in digits 2-5 and described a post-operative rehabilitation protocol which allowed early active metacarpophalangeal joint extension. Study designs included were randomised controlled trials, observational studies, cohort studies and case series. The Structured Effectiveness Quality Evaluation Scale was used to evaluate the methodological quality of the included studies. Twelve articles met the inclusion criteria. Two types of early active mobilisation protocols were identified: controlled active motion protocols and relative motion extension splinting protocols. Articles describing relative motion extension splinting protocols were more recent but of lower methodological quality than those describing controlled active motion protocols. Participants treated with controlled active motion and relative motion extension splinting protocols had similar range of motion outcomes, but those in relative motion extension splinting groups returned to work earlier. The evidence reviewed suggested that relative motion extension splinting protocols may allow an earlier return to function than controlled active motion protocols without a greater risk of complication.

Conservation of dark recovery kinetic parameters and structural features in the pseudomonadaceae "short" light, oxygen, voltage (LOV) protein family: implications for the design of LOV-based optogenetic tools.

PubMed

Rani, Raj; Jentzsch, Katrin; Lecher, Justin; Hartmann, Rudolf; Willbold, Dieter; Jaeger, Karl-Erich; Krauss, Ulrich

2013-07-02

In bacteria and fungi, various light, oxygen, voltage (LOV) sensory systems that lack a fused effector domain but instead contain only short N- and C-terminal extensions flanking the LOV core exist. In the prokaryotic kingdom, this so-called "short" LOV protein family represents the third largest LOV photoreceptor family. This observation prompted us to study their distribution and phylogeny as well as their photochemical and structural properties in more detail. We recently described the slow and fast reverting "short" LOV proteins PpSB1-LOV and PpSB2-LOV from Pseudomonas putida KT2440 whose adduct state lifetimes varied by 3 orders of magnitude [Jentzsch, K., Wirtz, A., Circolone, F., Drepper, T., Losi, A., Gärtner, W., Jaeger, K. E., and Krauss, U. (2009) Biochemistry 48, 10321-10333]. We now present evidence of the conservation of similar fast and slow-reverting "short" LOV proteins in different Pseudomonas species. Truncation studies conducted with PpSB1-LOV and PpSB2-LOV suggested that the short N- and C-terminal extensions outside of the LOV core domain are essential for the structural integrity and folding of the two proteins. While circular dichroism and solution nuclear magnetic resonance experiments verify that the two short C-terminal extensions of PpSB1-LOV and PpSB2-LOV form independently folding helical structures in solution, bioinformatic analyses imply the formation of coiled coils of the respective structural elements in the context of the dimeric full-length proteins. Given their prototypic architecture, conserved in most more complex LOV photoreceptor systems, "short" LOV proteins could represent ideally suited building blocks for the design of genetically encoded photoswitches (i.e., LOV-based optogenetic tools).

The Effects of Spaceflight on Neurocognitive Performance: Extent, Longevity, and Neural Bases

NASA Technical Reports Server (NTRS)

Seidler, Rachael D.; Bloomberg, Jacob; Wood, Scott; Mason, Sara; Mulavara, Ajit; Kofman, Igor; De Dios, Yiri; Gadd, Nicole; Stepanyan, Vahagn; Szecsy, Darcy

2017-01-01

Spaceflight effects on gait, balance, & manual motor control have been well studied; some evidence for cognitive deficits. Rodent cortical motor & sensory systems show neural structural alterations with spaceflight. We found extensive changes in behavior, brain structure & brain function following 70 days of HDBR. Specific Aim: Aim 1-Identify changes in brain structure, function, and network integrity as a function of spaceflight and characterize their time course. Aim 2-Specify relationships between structural and functional brain changes and performance and characterize their time course.

Geophysical-geological studies of possible extensions of the New Madrid Fault Zone. Annual report for 1983. Volume 2

DOE Office of Scientific and Technical Information (OSTI.GOV)

Hinze, W.J.; Braile, L.W.; Keller, G.R.

1985-04-01

Recent geophysical investigations have shown that the seismicity of the New Madrid, Missouri seismogenic region is correlative with an ancient rift complex suggesting that the anomalous seismicity is the result of the localization of the regional compressive stress pattern by basement structures. Preliminary evidence indicates that this inferred basement rift complex extends beyond the immediate realm of the intense New Madrid region microseismicity. An integrated geophysical/geological research program is being conducted to evaluate the rift complex hypothesis as an explanation for the earthquake activity in the New Madrid area and its extensions, to refine our knowledge of the structure andmore » physical properties of the rift complex, and to investigate the possible northern extensions of the New Madrid Fault zone, especially the possible northeastern connection to the Anna, Ohio seismic region. Investigation of the northeast extension of the New Madrid Rift Complex into eastern Indiana, north of 39/sup 0/N latitude, has focused upon the acquisition and preparation of arrays of gravity and magnetic anomaly data sets. Another possible arm of the New Madrid Rift Complex, the St. Louis Arm, which extends northwesterly from southern Illinois along the Mississippi River to St. Louis, Missouri, is being studied by an integrated geophysical, seismicity and geological investigation. However, during 1983, special emphasis was placed upon integration of gravity and magnetic anomaly data from the Anna, Ohio seismogenic region with basement lithologic and seismicity information to investigate the possible relationship of basement geology to the seismicity of the Anna area. Interpretation of these data indicate the occurrence of several major lithologic/structural features in the crust of the Anna area. Current seismicity in this region appears to be related to an ancient rift structure and possibly its contact with a low density pluton. 18 refs., 37 figs.« less

Bias extension test on a bi-axial non-crimp fabric powdered with a non-reactive binder system

NASA Astrophysics Data System (ADS)

Pourtier, Jean; Duchamp, Boris; Kowalski, Maxime; Legrand, Xavier; Wang, Peng; Soulat, Damien

2018-05-01

In this communication, we investigated the effects of a chemical non-reactive binder system (powder) on the formability of NCF. Those influences are evaluated for two different of bi-axial NCF structures tested in a range of temperature [20°C - 140°] during bias extension tests (Fig. 1). This analyze is based on the study of force in function of deformation modes (slipping effects and shear angle field).

36 CFR 28.12 - Development standards.

Code of Federal Regulations, 2010 CFR

2010-07-01

... unless it complies with the following: (a) A single-family home is the only type of development permitted... accessory structures on the property and any extension of the upper floors beyond the developed area on the... and accessory structures on the property and any extension of the upper floors beyond the developed...

the role of magmatism and segmentation in the structural evolution of the Afar Rift

NASA Astrophysics Data System (ADS)

Stab, Martin; Bellahsen, Nicolas; Pik, Raphaël; Quidelleur, Xavier; Ayalew, Dereje; Leroy, Sylvie

2015-04-01

A common issue at volcanic passive margins (VPM) is the lack of observation of the structures that accommodate stretching and thinning. Indeed, the most distal parts and the Ocean-Continent Transition is often masked by thick seaward-dipping reflectors (SDR) sequences. Some current challenges are then to know if the observed thinning fit the divergence (thinning vs dyking); and what is the rheological effect of magma supply that re-thickens the crust during extension? In the Central Afar magmatic rift (Ethiopia), the structures related to rifting since Oligocene are cropping out onshore and are well preserved. We present here a new structural model based on field data and lavas (U-Th/He and K/Ar) datings along a balanced cross-section of the Central Afar Western Margin. We mapped continent-ward normal fault array affecting highly tilted trapp series (29-30 Ma) unconformably overlain by tilted Oligo-Miocene (25-7 Ma) acid series. The main extensional and necking/thinning event took place during the end of this Miocene magmatic episode. The Pliocene flood basalt (Stratoid series) is erupted over an already thinned crust. The bulk extension for the Afar Western Margin is ß ~ 2.50. Our main findings are: - Oligo-Miocene deformation in Central Afar appears to be largely distributed through space and time ("magmatic wide rift"). It has been accommodated in a 200-300 km wide strip being a diffuse incipient plate boundary during the whole rifting history until the formation of present-day magmatic segments. There is a period of tectonic quiescence accompanied with few magma erupted at the surface between 25 Ma and 7 Ma. We suggest that tectonic and magmatic activity was focused at that time on the highly faulted Danakil block and Southern Red Sea, away from our study zone. - ß ~ 2.50 is higher than the thinning factor of ~1.30 observed in geophysical studies. We propose that the continental crust in Central Afar has been re-thickened during extension by the syn-rift magmatic supply. The difference in tectono-magmatic style between Central Afar (distributed extension and thick crust) and Northern Afar Erta Ale segment (narrow graben, thin crust) may be explained by the difference of magma volume (extruded & underplated) brought to the crust during extension. Magma supply in Central Afar thus allows the crust to be stretched without extreme thinning despite high degree of divergence. Thus, break-up may occur in both Central and Northern Afar, not depending on the apparent thickness of the crust but rather on the ability of the system to localize deformation. - There appears to be a link between early-rift transform zones and distribution of magmatic activity that affects in turn the structural style. We suggest that the closest feature from the SDR at mature VPM is the Stratoid series. The difference of volume between the Stratoid and the enormous volume of SDR imaged in seismic studies (e.g South Atlantic) is probably best explained by an initial low mantle potential temperature in Afar. Contrasted structural styles in Afar are the product of magma supply and segmentation, controlling thinning and extension distribution in the rift.

Detection of fibrils associated with Rickettsia rickettsii.

PubMed

Todd, W J; Burgdorfer, W; Wray, G P

1983-09-01

The ultrastructural appearance of the "halozone" formed at the interface between the spotted fever agent Rickettsia rickettsii and the cytoplasm of persistently infected cultured vole cells (Microtus pennsylvanicus) was studied by transmission electron microscopy. In sections of epoxy-embedded specimens stained with uranyl acetate and lead citrate, the halozone appeared clear and devoid of ultrastructural features. However, when unembedded preparations of whole infected cells were examined at 1,000 kV, fine structural features were observed within the halozone. These features, associated with the rickettsial outer membrane, were more clearly detectable when the infected cells were extracted with the detergent Triton X-100 before fixation. Under such conditions, long extensions of the rickettsial outer membrane, microfilament-like structures attached to that membrane, and extensive attachments between adjacent rickettsiae were seen. The fine structural features within the rickettsial halozone were also seen at 75 kV when unembedded sections were prepared from polyethylene glycol-embedded specimens. Thus, epoxy-embedding medium obscures the fine structural features within the halozone surrounding the rickettsiae in infected cells.

Detection of fibrils associated with Rickettsia rickettsii.

PubMed Central

Todd, W J; Burgdorfer, W; Wray, G P

1983-01-01

The ultrastructural appearance of the "halozone" formed at the interface between the spotted fever agent Rickettsia rickettsii and the cytoplasm of persistently infected cultured vole cells (Microtus pennsylvanicus) was studied by transmission electron microscopy. In sections of epoxy-embedded specimens stained with uranyl acetate and lead citrate, the halozone appeared clear and devoid of ultrastructural features. However, when unembedded preparations of whole infected cells were examined at 1,000 kV, fine structural features were observed within the halozone. These features, associated with the rickettsial outer membrane, were more clearly detectable when the infected cells were extracted with the detergent Triton X-100 before fixation. Under such conditions, long extensions of the rickettsial outer membrane, microfilament-like structures attached to that membrane, and extensive attachments between adjacent rickettsiae were seen. The fine structural features within the rickettsial halozone were also seen at 75 kV when unembedded sections were prepared from polyethylene glycol-embedded specimens. Thus, epoxy-embedding medium obscures the fine structural features within the halozone surrounding the rickettsiae in infected cells. Images PMID:6411620

Using cryoEM Reconstruction and Phase Extension to Determine Crystal Structure of Bacteriophage $${\\Phi}$$6 Major Capsid Protein

DOE Office of Scientific and Technical Information (OSTI.GOV)

Nemecek, Daniel; Plevka, Pavel; Boura, Evzen

2013-11-29

Bacteriophagemore » $${\\Phi}$$6 is a double-stranded RNA virus that has been extensively studied as a model organism. In this paper we describe structure determination of $${\\Phi}$$6 major capsid protein P1. The protein crystallized in base centered orthorhombic space group C2221. Matthews’s coefficient indicated that the crystals contain from four to seven P1 subunits in the crystallographic asymmetric unit. The self-rotation function had shown presence of fivefold axes of non-crystallographic symmetry in the crystals. Thus, electron density map corresponding to a P1 pentamer was excised from a previously determined cryoEM reconstruction of the $${\\Phi}$$6 procapsid at 7 Å resolution and used as a model for molecular replacement. The phases for reflections at higher than 7 Å resolution were obtained by phase extension employing the fivefold non-crystallographic symmetry present in the crystal. Lastly, the averaged 3.6 Å-resolution electron density map was of sufficient quality to allow model building.« less

Admixture in Latin America: Geographic Structure, Phenotypic Diversity and Self-Perception of Ancestry Based on 7,342 Individuals

PubMed Central

Ruiz-Linares, Andrés; Adhikari, Kaustubh; Acuña-Alonzo, Victor; Quinto-Sanchez, Mirsha; Jaramillo, Claudia; Arias, William; Fuentes, Macarena; Pizarro, María; Everardo, Paola; de Avila, Francisco; Gómez-Valdés, Jorge; León-Mimila, Paola; Hunemeier, Tábita; Ramallo, Virginia; Silva de Cerqueira, Caio C.; Burley, Mari-Wyn; Konca, Esra; de Oliveira, Marcelo Zagonel; Veronez, Mauricio Roberto; Rubio-Codina, Marta; Attanasio, Orazio; Gibbon, Sahra; Ray, Nicolas; Gallo, Carla; Poletti, Giovanni; Rosique, Javier; Schuler-Faccini, Lavinia; Salzano, Francisco M.; Bortolini, Maria-Cátira; Canizales-Quinteros, Samuel; Rothhammer, Francisco; Bedoya, Gabriel; Balding, David; Gonzalez-José, Rolando

2014-01-01

The current genetic makeup of Latin America has been shaped by a history of extensive admixture between Africans, Europeans and Native Americans, a process taking place within the context of extensive geographic and social stratification. We estimated individual ancestry proportions in a sample of 7,342 subjects ascertained in five countries (Brazil, Chile, Colombia, México and Perú). These individuals were also characterized for a range of physical appearance traits and for self-perception of ancestry. The geographic distribution of admixture proportions in this sample reveals extensive population structure, illustrating the continuing impact of demographic history on the genetic diversity of Latin America. Significant ancestry effects were detected for most phenotypes studied. However, ancestry generally explains only a modest proportion of total phenotypic variation. Genetically estimated and self-perceived ancestry correlate significantly, but certain physical attributes have a strong impact on self-perception and bias self-perception of ancestry relative to genetically estimated ancestry. PMID:25254375

Admixture in Latin America: geographic structure, phenotypic diversity and self-perception of ancestry based on 7,342 individuals.

PubMed

Ruiz-Linares, Andrés; Adhikari, Kaustubh; Acuña-Alonzo, Victor; Quinto-Sanchez, Mirsha; Jaramillo, Claudia; Arias, William; Fuentes, Macarena; Pizarro, María; Everardo, Paola; de Avila, Francisco; Gómez-Valdés, Jorge; León-Mimila, Paola; Hunemeier, Tábita; Ramallo, Virginia; Silva de Cerqueira, Caio C; Burley, Mari-Wyn; Konca, Esra; de Oliveira, Marcelo Zagonel; Veronez, Mauricio Roberto; Rubio-Codina, Marta; Attanasio, Orazio; Gibbon, Sahra; Ray, Nicolas; Gallo, Carla; Poletti, Giovanni; Rosique, Javier; Schuler-Faccini, Lavinia; Salzano, Francisco M; Bortolini, Maria-Cátira; Canizales-Quinteros, Samuel; Rothhammer, Francisco; Bedoya, Gabriel; Balding, David; Gonzalez-José, Rolando

2014-09-01

The current genetic makeup of Latin America has been shaped by a history of extensive admixture between Africans, Europeans and Native Americans, a process taking place within the context of extensive geographic and social stratification. We estimated individual ancestry proportions in a sample of 7,342 subjects ascertained in five countries (Brazil, Chile, Colombia, México and Perú). These individuals were also characterized for a range of physical appearance traits and for self-perception of ancestry. The geographic distribution of admixture proportions in this sample reveals extensive population structure, illustrating the continuing impact of demographic history on the genetic diversity of Latin America. Significant ancestry effects were detected for most phenotypes studied. However, ancestry generally explains only a modest proportion of total phenotypic variation. Genetically estimated and self-perceived ancestry correlate significantly, but certain physical attributes have a strong impact on self-perception and bias self-perception of ancestry relative to genetically estimated ancestry.

New Insight into the Role of Tectonics versus Gravitational Deformation in Development of Surface Ruptures along the Ragged Mountain Fault, Katalla, Alaska USA: Applications of High-Resolution Three-Dimensional Terrain Models

NASA Astrophysics Data System (ADS)

Heinlein, S. N.; Pavlis, T. L.; Bruhn, R. L.; McCalpin, J. P.

2017-12-01

This study evaluates a surface structure using 3D visualization of LiDAR and aerial photography then analyzes these datasets using structure mapping techniques. Results provide new insight into the role of tectonics versus gravitational deformation. The study area is located in southern Alaska in the western edge of the St. Elias Orogen where the Yakutat microplate is colliding into Alaska. Computer applications were used to produce 3D terrain models to create a kinematic assessment of the Ragged Mountain fault which trends along the length of the east flank of Ragged Mountain. The area contains geomorphic and structural features which are utilize to determine the type of displacement on the fault. Previous studies described the Ragged Mountain fault as a very shallow (8°), west-dipping thrust fault that reactivated in the Late Holocene by westward-directed gravity sliding and inferred at least 180 m of normal slip, in a direction opposite to the (relative) eastward thrust transport of the structure inferred from stratigraphic juxtaposition. More recently this gravity sliding hypothesis has been questioned and this study evaluates one of these alternative hypotheses; that uphill facing normal fault-scarps along the Ragged Mountain fault trace represent extension above a buried ramp in a thrust and is evaluated with a fault-parallel flow model of hanging-wall folding and extension. Profiles across the scarp trace were used to illustrate the curvature of the topographic surfaces adjacent to the scarps system and evaluate their origin. This simple kinematic model tests the hypothesis that extensional fault scarps at the surface are produced by flexure above a deeper ramp in a largely blind thrust system. The data in the context of this model implies that the extensional scarp structures previously examined represent a combination of erosionally modified features overprinted by flexural extension above a thrust system. Analyses of scarp heights along the structure are combined with the model to suggest a decrease in Holocene slip from south to north along the Ragged Mountain fault from 11.3 m to 0.2 m, respectively.

"What's in a structure?" The story of biguanides

NASA Astrophysics Data System (ADS)

Kathuria, Deepika; Bankar, Apoorva A.; Bharatam, Prasad V.

2018-01-01

Biguanides are a very interesting class of molecules which have been extensively studied for their medicinal applications. The structural and electronic structural aspects of biguanides have been explored in detail; however, even today, scientific literature continues to represent biguanides incorrectly as 1a. The X-ray crystal structure analysis and various spectroscopic studies such as UV, 1H and 15N NMR have confirmed that biguanide exists as tautomer 1b. Electronic structure analysis also supports the existence of 1b. This review focuses on the structure and electronic structure of biguanides and aims to emphasize the importance of the correct representation of a structure. There is a need to commence the use of 1b for the general representation of biguanides in textbooks and research articles which will ensure a correct perspective for further studies on these molecules.

Hydrolytic degradation of N,N‧-ethylenedimaleimide: Crystal structures of key intermediates and proposed mechanisms

NASA Astrophysics Data System (ADS)

Tan, Xue-Jie; Cheng, Shuang-Shuang; Shi, Yan; Xing, Dian-Xiang; Liu, Yun; Li, Hui; Feng, Wen-Quan; Yang, Jian-Bo

2016-12-01

Maleimide groups are used extensively in bioconjugation reactions, but limited mechanistic studies are available regarding their hydrolysis reactions. In this paper, five single-crystal structures related with the reaction of four-step hydrolytic degradation of N,N‧-ethylenedimaleimide have been investigated. On the basis of experimental results, the reaction mechanisms without or with water catalysis are proposed, which could provide some enlightenment into the study of similar hydrolytic degradations.

The Effect of a Helix-Coil Transition on the Extension Elasticity

NASA Astrophysics Data System (ADS)

Buhot, Arnaud; Halperin, Avi

2000-03-01

The secondary structure of a polymer affects its deformation behavior in accordance with the Le Chatelier principle. An important example of such secondary structure is the alpha helix encountered in polypeptides. Similar structure was recently proposed for PEO in aqueous media. Our discussion concerns the coupling of the cooperative helix-coil transition and the extension elasticity. In particular, we analyze the extension of a long single chain by use of optical tweezers or AFM. We consider chains that exist in the coil-state when unperturbed. The transition nevertheless occurs because the extension favors the low entropy helical state. As a result, the corresponding force law exhibits a plateau. The analysis of this situation involves two ingredients: (I) the stretching free energy penalty for a rod-coil mutiblock copolymer (II) the entropy associated with the possible placements of the rod and coil blocks.

Study of cost structures and cost finding procedures in the regulated transportation industries

DOT National Transportation Integrated Search

1959-11-01

The study of transportation costs is an extensive, relatively neglected, but dynamic subject. In view of its importance to the well-being of the national transportation network, it is a subject that bids fair to receive increasing attention, although...

Transnational Learning and Chinese Sayings

ERIC Educational Resources Information Center

Liu, Haedy

2017-01-01

Chinese sayings within the context of transnational education have not been extensively explored within higher education. In this qualitative study, which utilized semi-structured interviews, data were collected from 24 participants to explore their transnational study experience. Chinese sayings, framed within a rich Confucian history, provide a…

Influence of multi-cycle loading on the structure and mechanics of marine mussel plaques.

PubMed

Wilhelm, Menaka H; Filippidi, Emmanouela; Waite, J Herbert; Valentine, Megan T

2017-10-18

The proteinaceous byssal plaque-thread structures created by marine mussels exhibit extraordinary load-bearing capability. Although the nanoscopic protein interactions that support interfacial adhesion are increasingly understood, major mechanistic questions about how mussel plaques maintain toughness on supramolecular scales remain unanswered. This study explores the mechanical properties of whole mussel plaques subjected to repetitive loading cycles, with varied recovery times. Mechanical measurements were complemented with scanning electron microscopy to investigate strain-induced structural changes after yield. Multicyclic loading of plaques decreases their low-strain stiffness and introduces irreversible, strain-dependent plastic damage within the plaque microstructure. However, strain history does not compromise critical strength or maximum extension compared with plaques monotonically loaded to failure. These results suggest that a multiplicity of force transfer mechanisms between the thread and plaque-substrate interface allow the plaque-thread structure to accommodate a wide range of extensions as it continues to bear load. This improved understanding of the mussel system at micron-to-millimeter lengthscales offers strategies for including similar fail-safe mechanisms in the design of soft, tough and resilient synthetic structures.

Hierarchical structure and mechanical properties of snake (Naja atra) and turtle (Ocadia sinensis) eggshells.

PubMed

Chang, Yin; Chen, Po-Yu

2016-02-01

After hundreds of million years of evolution, natural armors have evolved in various organisms, and has manifested in diverse forms such as eggshells, abalone shells, alligator osteoderms, turtle shells, and fish scales. Eggshells serve as multifunctional shields for successful embryogenesis, such as protection, moisture control and thermal regulation. Unlike calcareous avian eggshells which are brittle and hard, reptilians have leathery eggshells that are tough and flexible. Reptilian eggshells can withstand collision damages when laid in holes and dropped onto each other, and reduce abrasion caused by buried sand. In this study, we investigate structure and mechanical properties of eggshells of Taiwan cobra snake (Naja atra) and Chinese striped-neck turtle (Ocadia sinensis). From Acid Fuchsin Orange G (AFOG) staining and ATR-FTIR examination, we found that both eggshells are mainly composed of keratin. The mechanical properties of demineralized snake and turtle eggshells were evaluated by tensile and fracture tests and show distinctly difference. Turtle eggshells are relatively stiff and rigid, while snake eggshells behave as elastomers, which are highly extensible and reversible. The exceptional deformability (110-230% tensile strain) and toughness of snake eggshells are contributed by the wavy and random arrangement of keratin fibers as well as collagen layers. Multi-scale toughening mechanisms of snake eggshells were observed and elucidated, including crack deflection and twisting, fibers reorientation, sliding and bridging, inter-laminar shear effect, as well as the α-β phase transition of keratin. Inspirations from the structural and mechanical designs of reptilian eggshells may lead to the synthesis of tough, extensible, lightweight composites which could be further applied in the flexible devices, packaging and bio-medical fields. Amniotic eggshells serve as multifunctional shields for successful embryogenesis. The avian eggshells have been extensively studied while there are very few studies on reptilian eggshells and most of them focused on mineralization and embryotic development. For the first time, the hierarchical structure and mechanical properties of snake and turtle eggshells are comprehensively and comparatively studied. Both snake and turtle eggshells are multilayer, hierarchically-structured composites consisting mainly of keratin yet their mechanical behaviors are distinctly different. Turtle eggshells are stiff and rigid, while snake eggshells are highly extensible (>200%) and reversible due to multiple deformation stages, phase transition of keratin and various toughening mechanisms. We believe that this study will make positive scientific impact and interest the broad and multidisciplinary readership. Copyright © 2015 Acta Materialia Inc. Published by Elsevier Ltd. All rights reserved.

DOE Office of Scientific and Technical Information (OSTI.GOV)

Tan, Lizhen; Yang, Ying; Chen, Tianyi

Advanced nuclear reactors as well as the life extension of light water reactors require advanced alloys capable of satisfactory operation up to neutron damage levels approaching 200 displacements per atom (dpa). Extensive studies, including fundamental theories, have demonstrated the superior resistance to radiation-induced swelling in ferritic steels, primarily inherited from their body-centered cubic (bcc) structure. This study aims at developing nanoprecipitates strengthened advanced ferritic alloys for advanced nuclear reactor applications. To be more specific, this study aims at enhancing the amorphization ability of some precipitates, such as Laves phase and other types of intermetallic phases, through smart alloying strategy, andmore » thereby promote the crystalline®amorphous transformation of these precipitates under irradiation.« less

Multiple-Group Confirmatory Factor Analysis in R--A Tutorial in Measurement Invariance with Continuous and Ordinal Indicators

ERIC Educational Resources Information Center

Hirschfeld, Gerrit; von Brachel, Ruth

2014-01-01

Multiple-group confirmatory factor analysis (MG-CFA) is among the most productive extensions of structural equation modeling. Many researchers conducting cross-cultural or longitudinal studies are interested in testing for measurement and structural invariance. The aim of the present paper is to provide a tutorial in MG-CFA using the freely…

Structures and mechanism of dipeptidyl peptidases 8 and 9, important players in cellular homeostasis and cancer.

PubMed

Ross, Breyan; Krapp, Stephan; Augustin, Martin; Kierfersauer, Reiner; Arciniega, Marcelino; Geiss-Friedlander, Ruth; Huber, Robert

2018-02-13

Dipeptidyl peptidases 8 and 9 are intracellular N-terminal dipeptidyl peptidases (preferentially postproline) associated with pathophysiological roles in immune response and cancer biology. While the DPP family member DPP4 is extensively characterized in molecular terms as a validated therapeutic target of type II diabetes, experimental 3D structures and ligand-/substrate-binding modes of DPP8 and DPP9 have not been reported. In this study we describe crystal and molecular structures of human DPP8 (2.5 Å) and DPP9 (3.0 Å) unliganded and complexed with a noncanonical substrate and a small molecule inhibitor, respectively. Similar to DPP4, DPP8 and DPP9 molecules consist of one β-propeller and α/β hydrolase domain, forming a functional homodimer. However, they differ extensively in the ligand binding site structure. In intriguing contrast to DPP4, where liganded and unliganded forms are closely similar, ligand binding to DPP8/9 induces an extensive rearrangement at the active site through a disorder-order transition of a 26-residue loop segment, which partially folds into an α-helix (R-helix), including R160/133, a key residue for substrate binding. As vestiges of this helix are also seen in one of the copies of the unliganded form, conformational selection may contributes to ligand binding. Molecular dynamics simulations support increased flexibility of the R-helix in the unliganded state. Consistently, enzyme kinetics assays reveal a cooperative allosteric mechanism. DPP8 and DPP9 are closely similar and display few opportunities for targeted ligand design. However, extensive differences from DPP4 provide multiple cues for specific inhibitor design and development of the DPP family members as therapeutic targets or antitargets.

Data dictionary services in XNAT and the Human Connectome Project.

PubMed

Herrick, Rick; McKay, Michael; Olsen, Timothy; Horton, William; Florida, Mark; Moore, Charles J; Marcus, Daniel S

2014-01-01

The XNAT informatics platform is an open source data management tool used by biomedical imaging researchers around the world. An important feature of XNAT is its highly extensible architecture: users of XNAT can add new data types to the system to capture the imaging and phenotypic data generated in their studies. Until recently, XNAT has had limited capacity to broadcast the meaning of these data extensions to users, other XNAT installations, and other software. We have implemented a data dictionary service for XNAT, which is currently being used on ConnectomeDB, the Human Connectome Project (HCP) public data sharing website. The data dictionary service provides a framework to define key relationships between data elements and structures across the XNAT installation. This includes not just core data representing medical imaging data or subject or patient evaluations, but also taxonomical structures, security relationships, subject groups, and research protocols. The data dictionary allows users to define metadata for data structures and their properties, such as value types (e.g., textual, integers, floats) and valid value templates, ranges, or field lists. The service provides compatibility and integration with other research data management services by enabling easy migration of XNAT data to standards-based formats such as the Resource Description Framework (RDF), JavaScript Object Notation (JSON), and Extensible Markup Language (XML). It also facilitates the conversion of XNAT's native data schema into standard neuroimaging vocabularies and structures.

Data dictionary services in XNAT and the Human Connectome Project

PubMed Central

Herrick, Rick; McKay, Michael; Olsen, Timothy; Horton, William; Florida, Mark; Moore, Charles J.; Marcus, Daniel S.

2014-01-01

The XNAT informatics platform is an open source data management tool used by biomedical imaging researchers around the world. An important feature of XNAT is its highly extensible architecture: users of XNAT can add new data types to the system to capture the imaging and phenotypic data generated in their studies. Until recently, XNAT has had limited capacity to broadcast the meaning of these data extensions to users, other XNAT installations, and other software. We have implemented a data dictionary service for XNAT, which is currently being used on ConnectomeDB, the Human Connectome Project (HCP) public data sharing website. The data dictionary service provides a framework to define key relationships between data elements and structures across the XNAT installation. This includes not just core data representing medical imaging data or subject or patient evaluations, but also taxonomical structures, security relationships, subject groups, and research protocols. The data dictionary allows users to define metadata for data structures and their properties, such as value types (e.g., textual, integers, floats) and valid value templates, ranges, or field lists. The service provides compatibility and integration with other research data management services by enabling easy migration of XNAT data to standards-based formats such as the Resource Description Framework (RDF), JavaScript Object Notation (JSON), and Extensible Markup Language (XML). It also facilitates the conversion of XNAT's native data schema into standard neuroimaging vocabularies and structures. PMID:25071542

The northern slope of South China Sea: an ideal site for studying passive margin extension and breakup

NASA Astrophysics Data System (ADS)

Zhou, D.; Sun, Z.; Pang, X.; Wu, X.; Xu, H.; Qiu, N.

2011-12-01

With the advance of hydrocarbon exploration into deep waters of the northern SCS, structural details from continental slope to deepsea basin have been revealed. A striking feature is the dramatic change in Cenozoic extension along and across the strike as well as with the time. Along strike the slope is seperated by lithospheric faults into segments with different amount of Cenozoic extension. The breakup occurred in the no-extension eastern segment (the Chaoshan depression), the most strongly extended central segment (the Baiyun sag) but failed in the western segment of intermediate extension (the Qingdongnan basin). This pattern violates the expectation that breakup occurs at first where the extension reached the maximum. In the central segment, the style of extension varies significantly in dip direction. Differing from the belts of half grabens in the shelf, the extension is expressed as a large downwarp (the Baiyun sag) in the slope, and as irregularly shaped sags (the Liwan sag) near the continental-oceanic boundary (COB). The Baiyun sag (BYS) is the largest and deepest sag in the Pearl River Mouth basin (PRMB). Long-cable MCS revealed that at the center of the BYS the crust thinned to <7 km. Grabens and half-grabens are seen only along the SW border of the BYS in Paleogene and did not control the main subsidence of the sag. In Neogene, swarms of NWW-striking small faults developed in the SW and NE flanks of the sag. These features indicate that ductile extension had dominated the formation of the BYS. Suppose the SCS started opening at 30 Ma (although no breakup unconformity found at 30 Ma in the ODP#1148 well adjacent to the COB), the anomalous post-breakup subsidence in the BYS exceeds that predicted by classical model by 1~2 km and occurred most strongly in several periods. Similar anomalous post-breakup subsidence has been observed also in the shelf. The Liwan sag (LWS) SE of the BYS is an aggregate of NS-, NW-, EW-, and NE-elongated narrow and short sags. Its complex shape differs from that of any other sag in the northern SCS, also differs from that of the lower slope of SE Atlantic margin and the Gulf of Mexico where thrust belts developed by gravitational sliding. Multi-staged magmatic activities have contributed to but could not fully explain the structural complexities of the LWS. Perhaps basement structures have played an important role as the sag might be developed upon the relict Mesozoic West Pacific subduction system. In addition, two horizons of deep-seated waving reflectors are identified beneath the LWS, which are suspected to be respectively a detachment surface and the intra-crustal shear zones related to lower-crust flow. A good understanding of these features may help answering the fundamental question on what controls the style, magnitude, and segmentation of passive margin extension and breakup, what is the mechanism, and what differences between marginal sea and open oceans in their evolution and dynamics. Preliminary attempt has been made taking into account basement structure, kinematics of bounding blocks, lithospheric rheology, lower crustal flow, as well as enhanced sediment supply by monsoon strengthening. This study is funded by CNSF40976033.

Sull'Integrazione delle Strutture Numeriche nella Scuola dell'Obbligo (Integrating Numerical Structures in Mandatory School).

ERIC Educational Resources Information Center

Bonotto, C.

1995-01-01

Attempted to verify knowledge regarding decimal and rational numbers in children ages 10-14. Discusses how pupils can receive and assimilate extensions of the number system from natural numbers to decimals and fractions and later can integrate this extension into a single and coherent numerical structure. (Author/MKR)

Liquid rocket engine nozzles

NASA Technical Reports Server (NTRS)

1976-01-01

The nozzle is a major component of a rocket engine, having a significant influence on the overall engine performance and representing a large fraction of the engine structure. The design of the nozzle consists of solving simultaneously two different problems: the definition of the shape of the wall that forms the expansion surface, and the delineation of the nozzle structure and hydraulic system. This monography addresses both of these problems. The shape of the wall is considered from immediately upstream of the throat to the nozzle exit for both bell and annular (or plug) nozzles. Important aspects of the methods used to generate nozzle wall shapes are covered for maximum-performance shapes and for nozzle contours based on criteria other than performance. The discussion of structure and hydraulics covers problem areas of regeneratively cooled tube-wall nozzles and extensions; it treats also nozzle extensions cooled by turbine exhaust gas, ablation-cooled extensions, and radiation-cooled extensions. The techniques that best enable the designer to develop the nozzle structure with as little difficulty as possible and at the lowest cost consistent with minimum weight and specified performance are described.

Mechanical, Dielectric, and Spectroscopic Characteristics of "Micro/Nanocellulose + Oxide" Composites.

PubMed

Nedielko, Maksym; Hamamda, Smail; Alekseev, Olexander; Chornii, Vitalii; Dashevskii, Mykola; Lazarenko, Maksym; Kovalov, Kostiantyn; Nedilko, Sergii G; Tkachov, Sergii; Revo, Sergiy; Scherbatskyi, Vasyl

2017-12-01

The set of composite materials that consist of micro/nanocellulose and complex K 2 Eu(MoO 4 )(PO 4 ) luminescent oxide particles was prepared. The composites were studied by means of scanning electron microscopy, XRD analysis, dilatometry, differential scanning calorimetry and thermogravimetric analysis, and dielectric and luminescence spectroscopy.Dependencies of density, crystallinity, relative extension, thermal extension coefficient, dielectric relaxation parameters, intensity and shape of photoluminescence bands on temperature, and content of oxide component were studied. The structure of the composite without oxide is formed by grains of nearly 5-50 μm in size (crystallinity is about ~56%). Structure of the micro/nanocellulose samples which contain oxide particles is similar, but the cellulose grains are deformed by oxide particles. Dependencies of the abovementioned properties on temperature and oxide content were analyzed together with data on the size distribution of oxide particles for the samples for various oxide and molecules of water concentrations.

Structure and Dynamics of End-to-End Loop Formation of the Penta-Peptide Cys-Ala-Gly-Gln-Trp in Implicit Solvents

DTIC Science & Technology

2009-01-01

implicit solvents on peptide structure and dynamics , we performed extensive molecular dynamics simulations on the penta-peptide Cys-Ala-Gly-Gln-Trp. Two...end-to-end distances and dihedral angles obtained from molecular dynamics simulations with implicit solvent models were in a good agreement with those...to maintain the temperature of the systems. Introduction Molecular dynamics (MD) simulation techniques are widely used to study structure and

High-pressure X-ray diffraction, Raman, and computational studies of MgCl2 up to 1 Mbar: Extensive pressure stability of the β-MgCl2 layered structure.

PubMed

Stavrou, Elissaios; Yao, Yansun; Zaug, Joseph M; Bastea, Sorin; Kalkan, Bora; Konôpková, Zuzana; Kunz, Martin

2016-08-12

Magnesium chloride (MgCl2) with the rhombohedral layered CdCl2-type structure (α-MgCl2) has been studied experimentally using synchrotron angle-dispersive powder x-ray diffraction and Raman spectroscopy using a diamond-anvil cell up to 100 GPa at room temperature and theoretically using first-principles density functional calculations. The results reveal a pressure-induced second-order structural phase transition to a hexagonal layered CdI2-type structure (β-MgCl2) at 0.7 GPa: the stacking sequence of the Cl anions are altered resulting in a reduction of the c-axis length. Theoretical calculations confirm this phase transition sequence and the calculated transition pressure is in excellent agreement with the experiment. Lattice dynamics calculations also reproduce the experimental Raman spectra measured for the ambient and high-pressure phase. According to our experimental results MgCl2 remains in a 2D layered phase up to 100 GPa and further, the 6-fold coordination of Mg cations is retained. Theoretical calculations of relative enthalpy suggest that this extensive pressure stability is due to a low enthalpy of the layered structure ruling out kinetic barrier effects. This observation is unusual, as it contradicts with the general structural behavior of highly compressed AB2 compounds.

High-pressure X-ray diffraction, Raman, and computational studies of MgCl 2 up to 1 Mbar: Extensive pressure stability of the β-MgCl 2 layered structure

DOE PAGES

Stavrou, Elissaios; Yao, Yansun; Zaug, Joseph M.; ...

2016-08-12

We studied magnesium chloride (MgCl 2) with the rhombohedral layered CdCl 2-type structure (α-MgCl 2), experimentally, using synchrotron angle-dispersive powder x-ray diffraction and Raman spectroscopy using a diamond-anvil cell up to 100 GPa at room temperature and theoretically using first-principles density functional calculations. Our results reveal a pressure-induced second-order structural phase transition to a hexagonal layered CdI 2-type structure (β-MgCl 2) at 0.7 GPa: the stacking sequence of the Cl anions are altered resulting in a reduction of the c-axis length. Theoretical calculations confirm this phase transition sequence and the calculated transition pressure is in excellent agreement with the experiment.more » Lattice dynamics calculations also reproduce the experimental Raman spectra measured for the ambient and high-pressure phase. According to our experimental results MgCl 2 remains in a 2D layered phase up to 100 GPa and further, the 6-fold coordination of Mg cations is retained. Theoretical calculations of relative enthalpy suggest that this extensive pressure stability is due to a low enthalpy of the layered structure ruling out kinetic barrier effects. Our observation is unusual, as it contradicts with the general structural behavior of highly compressed AB 2 compounds.« less

DIF Analysis with Multilevel Data: A Simulation Study Using the Latent Variable Approach

ERIC Educational Resources Information Center

Jin, Ying; Eason, Hershel

2016-01-01

The effects of mean ability difference (MAD) and short tests on the performance of various DIF methods have been studied extensively in previous simulation studies. Their effects, however, have not been studied under multilevel data structure. MAD was frequently observed in large-scale cross-country comparison studies where the primary sampling…

Binding in alkali and alkaline-earth tetrahydroborates: Special position of magnesium tetrahydroborate

NASA Astrophysics Data System (ADS)

Łodziana, Zbigniew; van Setten, Michiel J.

2010-01-01

Compounds of light elements and hydrogen are currently extensively studied due to their potential application in the field of hydrogen or energy storage. A number of new interesting tetrahydroborates that are especially promising due to their very high gravimetric hydrogen content were recently reported. However, the determination and understanding of their complex crystalline structures has created considerable debate. Metal tetrahydroborates, in general, form a large variety of structures ranging from simple for NaBH4 to very complex for Mg(BH4)2 . Despite the extensive discussion in the literature no clear explanation has been offered for this variety so far. In this paper we analyze the structural and electronic properties of a broad range of metal tetrahydroborates and reveal the factors that determine their structure: ionic bonding, the orientation of the BH4 groups, and the coordination number of the metal cation. We show, in a simple way, that the charge transfer in the metal tetrahydroborates rationally explains the structural diversity of these compounds. Being ionic systems, the metal tetrahydroborates fall into the classification of Linus Pauling. By using the ionic radius for the BH4 group as determined in this paper, this allows for structural predictions for new and mixed compounds.

Extension of research data repository system to support direct compute access to biomedical datasets: enhancing Dataverse to support large datasets

PubMed Central

McKinney, Bill; Meyer, Peter A.; Crosas, Mercè; Sliz, Piotr

2016-01-01

Access to experimental X-ray diffraction image data is important for validation and reproduction of macromolecular models and indispensable for the development of structural biology processing methods. In response to the evolving needs of the structural biology community, we recently established a diffraction data publication system, the Structural Biology Data Grid (SBDG, data.sbgrid.org), to preserve primary experimental datasets supporting scientific publications. All datasets published through the SBDG are freely available to the research community under a public domain dedication license, with metadata compliant with the DataCite Schema (schema.datacite.org). A proof-of-concept study demonstrated community interest and utility. Publication of large datasets is a challenge shared by several fields, and the SBDG has begun collaborating with the Institute for Quantitative Social Science at Harvard University to extend the Dataverse (dataverse.org) open-source data repository system to structural biology datasets. Several extensions are necessary to support the size and metadata requirements for structural biology datasets. In this paper, we describe one such extension—functionality supporting preservation of filesystem structure within Dataverse—which is essential for both in-place computation and supporting non-http data transfers. PMID:27862010

Magmatic versus tectonic influence in the Eolian arc: the case of Vulcano and Lipari islands revisited

NASA Astrophysics Data System (ADS)

Ruch, Joel; Di Lorenzo, Riccardo; Vezzoli, Luigina Maria; De Rosa, Rosanna; Acocella, Valerio; Catalano, Stefano; Romagnoli, Gino

2014-05-01

The prevalent influence of magma versus tectonics for the edification and the evolution of volcanic zones is matter of debate. Here we focus on Vulcano and Lipari, two active volcanic islands located in the central sector of the Eolian arc (North of Sicily). Both systems are influenced by regional tectonics and affected by historical magmatic events taking place along a NS oriented structure, connecting both islands. We revisit and implement previous structural studies performed during the 1980's considering several new geophysical, geochemical and geodynamical findings. Four extensive structural campaigns have been performed on both islands and along the shorelines in 2012-2013 covering about 80% of the possible accessible outcrops. We collected ~500 measurements (e.g. faults, fractures and dikes) at 40 sites. Overall, most of the observed structures are oriented N-S and NNW-SSE, confirming previous studies, however, almost all features are strikingly dominated by an EW-oriented extensive regime, which is a novelty. These findings are supported by kinematic indicators and suggest a predominant dip-slip component (pitch from 80 and 130°) with alternating left and right kinematics. Marginal faulting in most recent formations have been observed, suggesting that the deformation may occur preferentially during transient deformation related to periods of magmatic activity, instead of resulting from continuous regional tectonic processes. Overall, fault and dike planes are characterized by a dominant eastward immersion, suggesting an asymmetric graben-like structure of the entire area. This may be explained by the presence of a topographic gradient connecting both islands to the deep Gioia basin to the East, leading to a preferential ample gravitational collapse. Finally, we propose a model in which the stress field rotates northward. It transits from a pure right lateral strike-slip regime along the Tindari fault zone (tectonic-dominant) to an extensive regime explained by the presence of magma at depth inducing a local magmatic stress field affecting structures on Vulcano and Lipari islands (magmatic dominant).

Synthesis, base pairing and structure studies of geranylated RNA.

PubMed

Wang, Rui; Vangaveti, Sweta; Ranganathan, Srivathsan V; Basanta-Sanchez, Maria; Haruehanroengra, Phensinee; Chen, Alan; Sheng, Jia

2016-07-27

Natural RNAs utilize extensive chemical modifications to diversify their structures and functions. 2-Thiouridine geranylation is a special hydrophobic tRNA modification that has been discovered very recently in several bacteria, such as Escherichia coli, Enterobacter aerogenes, Pseudomonas aeruginosa and Salmonella Typhimurium The geranylated residues are located in the first anticodon position of tRNAs specific for lysine, glutamine and glutamic acid. This big hydrophobic terpene functional group affects the codon recognition patterns and reduces frameshifting errors during translation. We aimed to systematically study the structure, function and biosynthesis mechanism of this geranylation pathway, as well as answer the question of why nature uses such a hydrophobic modification in hydrophilic RNA systems. Recently, we have synthesized the deoxy-analog of S-geranyluridine and showed the geranylated T-G pair is much stronger than the geranylated T-A pair and other mismatched pairs in the B-form DNA duplex context, which is consistent with the observation that the geranylated tRNA(Glu) UUC recognizes GAG more efficiently than GAA. In this manuscript we report the synthesis and base pairing specificity studies of geranylated RNA oligos. We also report extensive molecular simulation studies to explore the structural features of the geranyl group in the context of A-form RNA and its effect on codon-anticodon interaction during ribosome binding. © The Author(s) 2016. Published by Oxford University Press on behalf of Nucleic Acids Research.

Exposure of Mn and FeSODs, but not Cu/ZnSOD, to NO leads to nitrosonium and nitroxyl ions generation which cause enzyme modification and inactivation: an in vitro study.

PubMed

Niketíc, V; Stojanović, S; Nikolić, A; Spasić, M; Michelson, A M

1999-11-01

The effect of NO treatment in vitro on structural and functional alterations of Cu/Zn, Mn, and Fe type of SODs was studied. Significant difference in response to NO of Cu/ZnSOD compared to the Mn and Fe types was demonstrated. Cu/ZnSOD was shown to be stable with respect to NO: even on prolonged exposure, NO produced negligible effect on its structure and activity. In contrast, both Mn and Fe types were found to be NO-sensitive: exposure to NO led to their fast and extensive inactivation, which was accompanied by extensive structural alterations, including (in some of the samples tested) the cleavage of enzyme polypeptide chains, presumably at His residues of the enzyme metal binding sites. The generation of nitrosonium (NO+) and nitroxyl (NO-) ions in NO treated Mn and FeSODs, which produce enzyme modifications and inactivation, was demonstrated. The physiological and biomedical significance of described findings is briefly discussed.

Sialyldisaccharide conformations: a molecular dynamics perspective

NASA Astrophysics Data System (ADS)

Selvin, Jeyasigamani F. A.; Priyadarzini, Thanu R. K.; Veluraja, Kasinadar

2012-04-01

Sialyldisaccharides are significant terminal components of glycoconjugates and their negative charge and conformation are extensively utilized in molecular recognition processes. The conformation and flexibility of four biologically important sialyldisaccharides [Neu5Acα(2-3)Gal, Neu5Acα(2-6)Gal, Neu5Acα(2-8)Neu5Ac and Neu5Acα(2-9)Neu5Ac] are studied using Molecular Dynamics simulations of 20 ns duration to deduce the conformational preferences of the sialyldisaccharides and the interactions which stabilize the conformations. This study clearly describes the possible conformational models of sialyldisaccharides deduced from 20 ns Molecular Dynamics simulations and our results confirm the role of water in the structural stabilization of sialyldisaccharides. An extensive analysis on the sialyldisaccharide structures available in PDB also confirms the conformational regions found by experiments are detected in MD simulations of 20 ns duration. The three dimensional structural coordinates for all the MD derived sialyldisaccharide conformations are deposited in the 3DSDSCAR database and these conformational models will be useful for glycobiologists and biotechnologists to understand the biological functions of sialic acid containing glycoconjugates.

Tectono-magmatic relationships along an obliquely convergent plate boundary: Sumatra, Indonesia.

NASA Astrophysics Data System (ADS)

Acocella, Valerio; Bellier, Olivier

2017-04-01

The tectono-magmatic relationships along divergent and orthogonally convergent plate boundaries have been defined in several aspects. However, much less is known along obliquely convergent plate boundaries, where the strain partitioning promotes strike-slip structures along the volcanic arc. Here it is unclear if and, in case, how strike-slip structures may control arc volcanism, in terms of processes, distribution and size. To better define these features, we review the available tectonic, structural and volcanological data on Sumatra (Indonesia), which provides the ideal case study. The Sumatra volcanic arc consists of 48 major active volcanoes. Of these, 46% lie within 10 km from the dextral Great Sumatra Fault (GSF), which carries most of the strike-slip displacement on the overriding plate, whereas 27% of the volcanoes lie at >20 km from the GSF. Considering the volcanoes lying within 10 km from GSF, 76% show some possible structural relation to the GSF, whereas only 28% (7 volcanoes) show a clear structural relation to the GSF, being located in pull-apart or releasing bends between dextral segments. However, these localized areas of extension do not seem to promote the development of magmatic segments, similarly to orthogonally convergent plate boundaries. Many volcanoes lie to the west of the GSF, largely following the shallower portions of the slab, which reaches its average partial melting depth (130±30 km) more westward. There is a preferred volcano alignment and elongation along the N30-N40°E trend, almost parallel to the convergence vector; this trend coincides with the direction of the extensional structures found along the arc. Other volcanoes are elongated parallel to the GSF, possibly resulting from the co- and post-seismic across-arc extension, as observed during the 2004 mega-earthquake. Finally, there is no relationship between the slip rate along GSF and the erupted volumes along the arc: the highest productivity of Toba caldera may be explained by a slab tear. Overall, these data highlight a limited control of the geometry and kinematics of the GSF on the arc volcanism of Sumatra. This control is mostly confined to the: a) suitable depth for partial melting of the slab; b) structural configuration of the GSF, promoting localized extension. Otherwise, magma may rise far from the GSF, where the direction of the feeder dikes may be controlled by the inter-seismic extension (perpendicular to the convergence vector) or by the arc normal co- and post-seismic extension.

Time-Dependent Thermally-Driven Interfacial Flows in Multilayered Fluid Structures

NASA Technical Reports Server (NTRS)

Haj-Hariri, Hossein; Borhan, A.

1996-01-01

A computational study of thermally-driven convection in multilayered fluid structures will be performed to examine the effect of interactions among deformable fluid-fluid interfaces on the structure of time-dependent flow in these systems. Multilayered fluid structures in two models configurations will be considered: the differentially heated rectangular cavity with a free surface, and the encapsulated cylindrical liquid bridge. An extension of a numerical method developed as part of our recent NASA Fluid Physics grant will be used to account for finite deformations of fluid-fluid interfaces.

46 CFR 176.675 - Extension of examination intervals.

Code of Federal Regulations, 2010 CFR

2010-10-01

... 46 Shipping 7 2010-10-01 2010-10-01 false Extension of examination intervals. 176.675 Section 176... 100 GROSS TONS) INSPECTION AND CERTIFICATION Hull and Tailshaft Examinations § 176.675 Extension of examination intervals. The intervals between drydock examinations and internal structural examinations...

Expanding the Nomological Net of the Pathological Narcissism Inventory: German Validation and Extension in a Clinical Inpatient Sample.

PubMed

Morf, Carolyn C; Schürch, Eva; Küfner, Albrecht; Siegrist, Philip; Vater, Aline; Back, Mitja; Mestel, Robert; Schröder-Abé, Michela

2017-06-01

The Pathological Narcissism Inventory (PNI) is a multidimensional measure for assessing grandiose and vulnerable features in narcissistic pathology. The aim of the present research was to construct and validate a German translation of the PNI and to provide further information on the PNI's nomological net. Findings from a first study confirm the psychometric soundness of the PNI and replicate its seven-factor first-order structure. A second-order structure was also supported but with several equivalent models. A second study investigating associations with a broad range of measures ( DSM Axis I and II constructs, emotions, personality traits, interpersonal and dysfunctional behaviors, and well-being) supported the concurrent validity of the PNI. Discriminant validity with the Narcissistic Personality Inventory was also shown. Finally, in a third study an extension in a clinical inpatient sample provided further evidence that the PNI is a useful tool to assess the more pathological end of narcissism.

Efficient 3D kinetic Monte Carlo method for modeling of molecular structure and dynamics.

PubMed

Panshenskov, Mikhail; Solov'yov, Ilia A; Solov'yov, Andrey V

2014-06-30

Self-assembly of molecular systems is an important and general problem that intertwines physics, chemistry, biology, and material sciences. Through understanding of the physical principles of self-organization, it often becomes feasible to control the process and to obtain complex structures with tailored properties, for example, bacteria colonies of cells or nanodevices with desired properties. Theoretical studies and simulations provide an important tool for unraveling the principles of self-organization and, therefore, have recently gained an increasing interest. The present article features an extension of a popular code MBN EXPLORER (MesoBioNano Explorer) aiming to provide a universal approach to study self-assembly phenomena in biology and nanoscience. In particular, this extension involves a highly parallelized module of MBN EXPLORER that allows simulating stochastic processes using the kinetic Monte Carlo approach in a three-dimensional space. We describe the computational side of the developed code, discuss its efficiency, and apply it for studying an exemplary system. Copyright © 2014 Wiley Periodicals, Inc.

HEAVY METALS STRUCTURE BENTHIC COMUNITIES IN COLORADO MOUNTAIN STREAMS

EPA Science Inventory

The development of field sampling designs that employ multiple reference and polluted sites has been proposed as an alternative to the traditional upstream vs. downstream approach used in most biomonitoring studies. Spatially extensive monitoring programs can characterize ecologi...

The structure of mushroom polysaccharides and their beneficial role in health.

PubMed

Huang, Xiaojun; Nie, Shaoping

2015-10-01

Mushroom is a kind of fungus that has been popular for its special flavour and renowned biological values. The polysaccharide contained in mushroom is regarded as one of the primary bioactive constituents and is beneficial for health. The structural features and bioactivities of mushroom polysaccharides have been studied extensively. It is believed that the diverse biological bioactivities of polysaccharides are closely related to their structure or conformation properties. In this review, the structural characteristics, conformational features and bioactivities of several mushroom polysaccharides are summarized, and their beneficial mechanisms and the relationships between their structure and bioactivities are also discussed.

Reanalysis, compatibility and correlation in analysis of modified antenna structures

NASA Technical Reports Server (NTRS)

Levy, R.

1989-01-01

A simple computational procedure is synthesized to process changes in the microwave-antenna pathlength-error measure when there are changes in the antenna structure model. The procedure employs structural modification reanalysis methods combined with new extensions of correlation analysis to provide the revised rms pathlength error. Mainframe finite-element-method processing of the structure model is required only for the initial unmodified structure, and elementary postprocessor computations develop and deal with the effects of the changes. Several illustrative computational examples are included. The procedure adapts readily to processing spectra of changes for parameter studies or sensitivity analyses.

Getting off the Straight and Narrow: Exploiting Non-Linear, Interactive Narrative Structures in Digital Stories for Language Teaching

ERIC Educational Resources Information Center

Prosser, Andrew

2014-01-01

Digital storytelling is already used extensively in language education. Web documentaries, particularly in terms of design and narrative structure, provide an extension of the digital storytelling concept, specifically in terms of increased interactivity. Using a model of interactive, non-linear storytelling, originally derived from computer game…

Fourier transform infrared spectroscopic studies of the secondary structure and thermal denaturation of CaATPase from rabbit skeletal muscle

NASA Astrophysics Data System (ADS)

Jaworsky, Mark; Brauner, Joseph W.; Mendelsohn, Richard

Fourier transform i.r. spectroscopy has been used to monitor structural alterations induced by thermal denaturation of the intrinsic membrane protein CaATPase in aqueous media. The protein has been isolated, purified and studied in five forms: (i) In its native lipid environment after isolation from rabbit sarcoplasmic reticulum, both in H 2O and D 2O suspensions. (ii) After both mild and extensive tryptic digestion has cleaved those residues external to the membrane bilayer. (iii) Reconstituted in vesicle form with bovine brain sphingomyelin. Fourier deconvolution techniques have been used to enhance the resolution of the intrinsically overlapped Amide I and Amide II spectral regions. Large spectral alterations apparent in the deconvoluted spectra occur in these regions upon thermal denaturation of the protein which are consistent with the formation of a large proportion of β-antiparallel sheet form. The alteration parallels the loss in ATPase activity. A mild tryptic digestion increases slightly the proportion of α-helix and/or random coil secondary structure. A thermal transition to a form containing a high proportion of β structure is still evident. Extensive tryptic digestion nearly abolishes the alpha helical plus random coil secondary structure, while producing a high proportion of β form which is resistant to further thermally induced structural alterations. Studies of CaATPase reconstituted into vesicles with bovine brain sphingomyelin reveal a higher proportion of β structure than the native enzyme, with further introduction of β structure on thermal denaturation. Both the utility of deconvolution techniques and the necessity for caution in their application are apparent from the current experiments.

Metamorphic core complexes: Expression of crustal extension by ductile-brittle shearing of the geologic column

NASA Technical Reports Server (NTRS)

Davis, G. H.

1985-01-01

Metamorphic core complexes and detachment fault terranes in the American Southwest are products of stretching of continental crust in the Tertiary. The physical and geometric properties of the structures, fault rocks, and contact relationships that developed as a consequence of the extension are especially well displayed in southeastern Arizona. The structures and fault rocks, as a system, reflect a ductile-through-brittle continuum of deformation, with individual structures and faults rocks showing remarkably coordinated strain and displacement patterns. Careful mapping and analysis of the structural system has led to the realization that strain and displacement were partitioned across a host of structures, through a spectrum of scales, in rocks of progressively changing rheology. By integrating observations made in different parts of the extensional system, especially at different inferred depth levels, it has been possible to construct a descriptive/kinematic model of the progressive deformation that achieved continental crustal extension in general, and the development of metamorphic core complexes in particular.

Scaphoid tuberosity excursion is minimized during a dart-throwing motion: A biomechanical study.

PubMed

Werner, Frederick W; Sutton, Levi G; Basu, Niladri; Short, Walter H; Moritomo, Hisao; St-Amand, Hugo

2016-01-01

The purpose of this study was to determine whether the excursion of the scaphoid tuberosity and therefore scaphoid motion is minimized during a dart-throwing motion. Scaphoid tuberosity excursion was studied as an indicator of scaphoid motion in 29 cadaver wrists as they were moved through wrist flexion-extension, radioulnar deviation, and a dart-throwing motion. Study results demonstrate that excursion was significantly less during the dart-throwing motion than during either wrist flexion-extension or radioulnar deviation. If the goal of early wrist motion after carpal ligament or distal radius injury and reconstruction is to minimize loading of the healing structures, a wrist motion in which scaphoid motion is minimal should reduce length changes in associated ligamentous structures. Therefore, during rehabilitation, if a patient uses a dart-throwing motion that minimizes his or her scaphoid tuberosity excursion, there should be minimal changes in ligament loading while still allowing wrist motion. Bench research, biomechanics, and cross-sectional. Not applicable. The study was laboratory based. Copyright © 2016 Hanley & Belfus. Published by Elsevier Inc. All rights reserved.

Robust procedure for creating and characterizing the atomic structure of scanning tunneling microscope tips.

PubMed

Tewari, Sumit; Bastiaans, Koen M; Allan, Milan P; van Ruitenbeek, Jan M

2017-01-01

Scanning tunneling microscopes (STM) are used extensively for studying and manipulating matter at the atomic scale. In spite of the critical role of the STM tip, procedures for controlling the atomic-scale shape of STM tips have not been rigorously justified. Here, we present a method for preparing tips in situ while ensuring the crystalline structure and a reproducibly prepared tip structure up to the second atomic layer. We demonstrate a controlled evolution of such tips starting from undefined tip shapes.

Amphibolite boudins in marble on Naxos, Greece: 3D analysis of multiphase deformation on a retrograde P-T path

NASA Astrophysics Data System (ADS)

Virgo, Simon; von Hagke, Christoph; Urai, Janos L.

2017-04-01

Boudins are periodic structures that form by layer parallel extension in mechanically layered rocks. The characteristics of boudins such as orientation and geometry provide constraints on the paleo stress field as well as the rheology of the rocks during deformation. However, most characterizations of boudinage are based on 2D observations and do not consider the 3-dimensional complexity and potentially non-coaxial polyphase genesis of boudinage structures. In marble quarries in the high grade complex on Naxos, Greece, we studied spectacular outcrops of amphibolite and pegmatite boudins, in combination with serial slicing of quarried blocks to reconstruct the 3D boudin structures. We identified five boudin generations with two distinct generations of early, high grade pinch-and-swell followed by two generations of brittle shearband and torn boudins formed along the retrograde path under greenschist facies conditions. The five generations of boudinage indicate that E-W compression is the main mode of deformation in the marbles. The axis of extension changes from subvertical during pinch-and swell deformation to subhorizontal N-S extension at later stages of deformation. Later phases of boudinage are influenced by existing boudin geometries, producing complex structures in 3D. In 2D section the complexity is not directly apparent and reveals itself only after statistical analysis of long continuous sections. Apart from implications for the regional geology, our findings highlight the importance of 3D characterization of boudinage structures for boudin classification. The insights we gain from the analysis of multiphase boudinage structures on Naxos are the basis for quantitative boudin analysis to infer rheology, effective stress, vorticity and strain, and establish a boudin classification scheme with appeal to a complete mechanics.

The Physiological Molecular Shape of Spectrin: A Compact Supercoil Resembling a Chinese Finger Trap.

PubMed

Brown, Jeffrey W; Bullitt, Esther; Sriswasdi, Sira; Harper, Sandra; Speicher, David W; McKnight, C James

2015-06-01

The primary, secondary, and tertiary structures of spectrin are reasonably well defined, but the structural basis for the known dramatic molecular shape change, whereby the molecular length can increase three-fold, is not understood. In this study, we combine previously reported biochemical and high-resolution crystallographic data with structural mass spectroscopy and electron microscopic data to derive a detailed, experimentally-supported quaternary structure of the spectrin heterotetramer. In addition to explaining spectrin's physiological resting length of ~55-65 nm, our model provides a mechanism by which spectrin is able to undergo a seamless three-fold extension while remaining a linear filament, an experimentally observed property. According to the proposed model, spectrin's quaternary structure and mechanism of extension is similar to a Chinese Finger Trap: at shorter molecular lengths spectrin is a hollow cylinder that extends by increasing the pitch of each spectrin repeat, which decreases the internal diameter. We validated our model with electron microscopy, which demonstrated that, as predicted, spectrin is hollow at its biological resting length of ~55-65 nm. The model is further supported by zero-length chemical crosslink data indicative of an approximately 90 degree bend between adjacent spectrin repeats. The domain-domain interactions in our model are entirely consistent with those present in the prototypical linear antiparallel heterotetramer as well as recently reported inter-strand chemical crosslinks. The model is consistent with all known physical properties of spectrin, and upon full extension our Chinese Finger Trap Model reduces to the ~180-200 nm molecular model currently in common use.

1. U.S. Route 250 grade separation structure. This reinforced concrete, ...

Library of Congress Historic Buildings Survey, Historic Engineering Record, Historic Landscapes Survey

1. U.S. Route 250 grade separation structure. This reinforced concrete, rigid frame structure was built in 1941. Its relatively flat arch provided maximum useful clearance in a short span and the physics of the design eliminated the need for extensive abutments to contain the thrust of traditional arches, making it ideally suited as a grade separation structure. BLRI designers made extensive use of theses bridges for crossing small streams and creeks, and grade separation structures, ornamenting them with a rustic stone facade. View is of the south-southeast elevation. - Blue Ridge Parkway, Between Shenandoah National Park & Great Smoky Mountains, Asheville, Buncombe County, NC

Multiphase boudinage: a case study of amphibolites in marble in the Naxos migmatite core

NASA Astrophysics Data System (ADS)

Virgo, Simon; von Hagke, Christoph; Urai, Janos L.

2018-02-01

In multiply deformed terrains multiphase boudinage is common, but identification and analysis of these is difficult. Here we present an analysis of multiphase boudinage and fold structures in deformed amphibolite layers in marble from the migmatitic centre of the Naxos metamorphic core complex. Overprinting between multiple boudinage generations is shown in exceptional 3-D outcrop. We identify five generations of boudinage, reflecting the transition from high-strain high-temperature ductile deformation to medium- to low-strain brittle boudins formed during cooling and exhumation. All boudin generations indicate E-W horizontal shortening and variable direction of bedding parallel extension, evolving from subvertical extension in the earliest boudins to subhorizontal N-S extension during exhumation. Two phases of E-W shortening can be inferred, the first associated with lower crustal synmigmatic convergent flow and the second associated with exhumation and N-S extension, possibly related to movement of the North Anatolian Fault.

Coordination characteristics of uranyl BBP complexes: Insights from an electronic structure analysis

DOE PAGES

Pemmaraju, Chaitanya Das; Copping, Roy; Smiles, Danil E.; ...

2017-03-21

Here, organic ligand complexes of lanthanide/actinide ions have been studied extensively for applications in nuclear fuel storage and recycling. Several complexes of 2,6-bis(2-benzimidazyl)pyridine (H2BBP) featuring the uranyl moiety have been reported recently, and the present study investigates the coordination characteristics of these complexes using density functional theory-based electronic structure analysis. In particular, with the aid of several computational models, the nonplanar equatorial coordination about uranyl, observed in some of the compounds, is studied and its origin traced to steric effects.

Movement Analysis of Flexion and Extension of Honeybee Abdomen Based on an Adaptive Segmented Structure

PubMed Central

Zhao, Jieliang; Wu, Jianing; Yan, Shaoze

2015-01-01

Honeybees (Apis mellifera) curl their abdomens for daily rhythmic activities. Prior to determining this fact, people have concluded that honeybees could curl their abdomen casually. However, an intriguing but less studied feature is the possible unidirectional abdominal deformation in free-flying honeybees. A high-speed video camera was used to capture the curling and to analyze the changes in the arc length of the honeybee abdomen not only in free-flying mode but also in the fixed sample. Frozen sections and environment scanning electron microscope were used to investigate the microstructure and motion principle of honeybee abdomen and to explore the physical structure restricting its curling. An adaptive segmented structure, especially the folded intersegmental membrane (FIM), plays a dominant role in the flexion and extension of the abdomen. The structural features of FIM were utilized to mimic and exhibit movement restriction on honeybee abdomen. Combining experimental analysis and theoretical demonstration, a unidirectional bending mechanism of honeybee abdomen was revealed. Through this finding, a new perspective for aerospace vehicle design can be imitated. PMID:26223946

Next Steps in Bayesian Structural Equation Models: Comments on, Variations of, and Extensions to Muthen and Asparouhov (2012)

ERIC Educational Resources Information Center

Rindskopf, David

2012-01-01

Muthen and Asparouhov (2012) made a strong case for the advantages of Bayesian methodology in factor analysis and structural equation models. I show additional extensions and adaptations of their methods and show how non-Bayesians can take advantage of many (though not all) of these advantages by using interval restrictions on parameters. By…

Phase separation and mechanical properties of an elastomeric biomaterial from spider wrapping silk and elastin block copolymers.

PubMed

Muiznieks, Lisa D; Keeley, Fred W

2016-10-01

Elastin and silk spidroins are fibrous, structural proteins with elastomeric properties of extension and recoil. While elastin is highly extensible and has excellent recovery of elastic energy, silks are particularly strong and tough. This study describes the biophysical characterization of recombinant polypeptides designed by combining spider wrapping silk and elastin-like sequences as a strategy to rationally increase the strength of elastin-based materials while maintaining extensibility. We demonstrate a thermo-responsive phase separation and spontaneous colloid-like droplet formation from silk-elastin block copolymers, and from a 34 residue disordered region of Argiope trifasciata wrapping silk alone, and measure a comprehensive suite of tensile mechanical properties from cross-linked materials. Silk-elastin materials exhibited significantly increased strength, toughness, and stiffness compared to an elastin-only material, while retaining high failure strains and low energy loss upon recoil. These data demonstrate the mechanical tunability of protein polymer biomaterials through modular, chimeric recombination, and provide structural insights into mechanical design. © 2016 Wiley Periodicals, Inc. Biopolymers 105: 693-703, 2016. © 2016 Wiley Periodicals, Inc.

Process Extension from Embryonic Stem Cell-Derived Motor Neurons through Synthetic Extracellular Matrix Mimics

NASA Astrophysics Data System (ADS)

McKinnon, Daniel Devaud

This thesis focuses on studying the extension of motor axons through synthetic poly(ethylene glycol) PEG hydrogels that have been modified with biochemical functionalities to render them more biologically relevant. Specifically, the research strategy is to encapsulate embryonic stem cell-derived motor neurons (ESMNs) in synthetic PEG hydrogels crosslinked through three different chemistries providing three mechanisms for dynamically tuning material properties. First, a covalently crosslinked, enzymatically degradable hydrogel is developed and exploited to study the biophysical dynamics of axon extension and matrix remodeling. It is demonstrated that dispersed motor neurons require a battery of adhesive peptides and growth factors to maintain viability and extend axons while those in contact with supportive neuroglial cells do not. Additionally, cell-degradable crosslinker peptides and a soft modulus mimicking that of the spinal cord are requirements for axon extension. However, because local degradation of the hydrogel results in a cellular environment significantly different than that of the bulk, enzymatically degradable peptide crosslinkers were replaced with reversible covalent hydrazone bonds to study the effect of hydrogel modulus on axon extension. This material is characterized in detail and used to measure forces involved in axon extension. Finally, a hydrogel with photocleavable linkers incorporated into the network structure is exploited to explore motor axon response to physical channels. This system is used to direct the growth of motor axons towards co-cultured myotubes, resulting in the formation of an in vitro neural circuit.

Brain structural plasticity with spaceflight.

PubMed

Koppelmans, Vincent; Bloomberg, Jacob J; Mulavara, Ajitkumar P; Seidler, Rachael D

2016-01-01

Humans undergo extensive sensorimotor adaptation during spaceflight due to altered vestibular inputs and body unloading. No studies have yet evaluated the effects of spaceflight on human brain structure despite the fact that recently reported optic nerve structural changes are hypothesized to occur due to increased intracranial pressure occurring with microgravity. This is the first report on human brain structural changes with spaceflight. We evaluated retrospective longitudinal T2-weighted MRI scans and balance data from 27 astronauts (thirteen ~2-week shuttle crew members and fourteen ~6-month International Space Station crew members) to determine spaceflight effects on brain structure, and whether any pre to postflight brain changes are associated with balance changes. Data were obtained from the NASA Lifetime Surveillance of Astronaut Health. Brain scans were segmented into gray matter maps and normalized into MNI space using a stepwise approach through subject specific templates. Non-parametric permutation testing was used to analyze pre to postflight volumetric gray matter changes. We found extensive volumetric gray matter decreases, including large areas covering the temporal and frontal poles and around the orbits. This effect was larger in International Space Station versus shuttle crew members in some regions. There were bilateral focal gray matter increases within the medial primary somatosensory and motor cortex; i.e., the cerebral areas where the lower limbs are represented. These intriguing findings are observed in a retrospective data set; future prospective studies should probe the underlying mechanisms and behavioral consequences.

Functional and structural insights into novel DREB1A transcription factors in common wheat (Triticum aestivum L.): A molecular modeling approach.

PubMed

Kumar, Anuj; Kumar, Sanjay; Kumar, Upendra; Suravajhala, Prashanth; Gajula, M N V Prasad

2016-10-01

Triticum aestivum L. known as common wheat is one of the most important cereal crops feeding a large and growing population. Various environmental stress factors including drought, high salinity and heat etc. adversely affect wheat production in a significant manner. Dehydration-responsive element-binding (DREB1A) factors, a class of transcription factors (TF) play an important role in combating drought stress. It is known that DREB1A specifically interacts with the dehydration responsive elements (DRE/CRT) inducing expression of genes involved in environmental stress tolerance in plants. Despite its critical interplay in plants, the structural and functional aspects of DREB1A TF in wheat remain unresolved. Previous studies showed that wheat DREBs (DREB1 and DREB2) were isolated using various methods including yeast two-hybrid screens but no extensive structural models were reported. In this study, we made an extensive in silico study to gain insight into DREB1A TF and reported the location of novel DREB1A in wheat chromosomes. We inferred the three-dimensional structural model of DREB1A using homology modelling and further evaluated them using molecular dynamics(MD) simulations yielding refined modelled structures. Our biochemical function predictions suggested that the wheat DREB1A orthologs have similar biochemical functions and pathways to that of AtDREB1A. In conclusion, the current study presents a structural perspective of wheat DREB1A and helps in understanding the molecular basis for the mechanism of DREB1A in response to environmental stress. Copyright © 2016 Elsevier Ltd. All rights reserved.

Micromechanical-biochemical studies of mitotic chromosome elasticity and structure

NASA Astrophysics Data System (ADS)

Poirier, Michael Guy

The structure of mitotic chromosomes was studied by combining micromechanical force measurements with microfluidic biochemical exposures. Our method is to use glass micropipettes attached to either end of a single chromosome to do mechanical experiments in the extracellular buffer. A third pipette can be used to locally 'spray' reactants so as to carry out dynamical mechanical-chemical experiments. The following elastic properties of mitotic chromosomes are found: Young's modulus, Y = 300 Pa; Poisson ratio, sigma = 0.1; Bending rigidity, B = 1 x 10 -22 J·m; Internal viscosity, eta' = 100 kg/m·sec; Volume fraction, ϕ = 0.7; Extensions of less than 3 times the relaxed length are linear and reversible; Extensions beyond 30 fold exhibit a force plateau at 15 nN and convert the chromosome to a disperse ghost-like state with little change in chromatin structure; Mitotic chromosomes are relatively isotropic; dsDNA cuts of at least every 3 kb cause the a mitotic chromosomes to fall apart; dsDNA cuts less frequently than every 50 kb do not affect mitotic chromosome structure. These results lead to the conclusion that mitotic chromosomes are a network crosslinked every 50 kb between which chromatin is fold by chromatin folding proteins, which are likely to be condensins.

A Psychometric Examination of the Interpersonal Sexual Objectification Scale among College Men

ERIC Educational Resources Information Center

Davidson, M. Meghan; Gervais, Sarah J.; Canivez, Gary L.; Cole, Brian P.

2013-01-01

Whereas sexual objectification has most commonly been studied among women, recent calls by counseling psychologists have urged for an extension of objectification research to more fully include men (e.g., Heimerdinger-Edwards, Vogel, & Hammer, 2011). The present study examined the factor structure of the Interpersonal Sexual Objectification Scale…

Investigating the Place and Meaning of "Physical Education" to Preschool Children: Methodological Lessons from a Research Study

ERIC Educational Resources Information Center

McEvilly, Nollaig

2015-01-01

Preschool physical education has not been extensively researched. Furthermore, research in physical activity and physical education rarely seeks young children's perspectives. The current paper focuses on one aspect of a post-structural study concerned with investigating the place and meaning of "physical education" to practitioners and…

The Genres of "Shouted Speech" in Cheke Holo.

ERIC Educational Resources Information Center

Boswell, Freddy

Speech genres in Cheke Holo (CH) have not been studied extensively. Speech genres related to shouted speech in CH deserves more study because it is commonly used. Culturally speaking, shouted speech is a natural expression of the importance and centrality of CH community and surrounding authority structures, and has a very strong hortatory…

Fulfilling the Partnership: University Assistance to Elementary and Secondary Schools Undertaking a Self-Study.

ERIC Educational Resources Information Center

Gose, Kenneth F.

1985-01-01

Focuses on university offerings to assist schools with accreditation self-studies. Describes the extension/continuing education courses offered by the state universities in Arizona, detailing the ways in which the courses assist accreditation steering committees, course structure and content, and the benefits for both school and university. (AYC)

Structural Controls of the Tuscarora Geothermal Field, Elko County, Nevada

NASA Astrophysics Data System (ADS)

Dering, Gregory M.

Detailed geologic mapping, structural analysis, and well data have been integrated to elucidate the stratigraphic framework and structural setting of the Tuscarora geothermal area. Tuscarora is an amagmatic geothermal system that lies in the northern part of the Basin and Range province, ˜15 km southeast of the Snake River Plain and ˜90 km northwest of Elko, Nevada. The Tuscarora area is dominated by late Eocene to middle Miocene volcanic and sedimentary rocks, all overlying Paleozoic metasedimentary rocks. A geothermal power plant was constructed in 2011 and currently produces 18 MWe from an ˜170°C reservoir in metasedimentary rocks at a depth of 1740 m. Analysis of drill core reveals that the subsurface geology is dominated to depths of ˜700-1000 m by intracaldera deposits of the Eocene Big Cottonwood Canyon caldera, including blocks of basement-derived megabreccia. Furthermore, the Tertiary-Paleozoic nonconformity within the geothermal field has been recognized as the margin of this Eocene caldera. Structural relations combined with geochronologic data from previous studies indicate that Tuscarora has undergone extension since the late Eocene, with significant extension in the late Miocene-Pliocene to early Pleistocene. Kinematic analysis of fault slip data reveal an east-west-trending least principal paleostress direction, which probably reflects an earlier episode of Miocene extension. Two distinct structural settings at different scales appear to control the geothermal field. The regional structural setting is a 10-km wide complexly faulted left step or relay ramp in the west-dipping range-bounding Independence-Bull Run Mountains normal fault system. Geothermal activity occurs within the step-over where sets of east- and west-dipping normal faults overlap in a northerly trending accommodation zone. The distribution of hot wells and hydrothermal surface features, including boiling springs, fumaroles, and siliceous sinter, indicate that the geothermal system is restricted to the narrow (< 1 km) axial part of the accommodation zone, where permeability is maintained at depth around complex fault intersections. Shallow up-flow appears to be focused along several closely spaced steeply west-dipping north-northeast-striking normal faults within the axial part of the accommodation zone. These faults are favorably oriented for extension and fluid flow under the present-day northwest-trending regional extension direction indicated by previous studies of GPS geodetic data, earthquake focal mechanisms, and kinematic data from late Quaternary faults. The recognition of the axial part of an accommodation zone as a favorable structural setting for geothermal activity may be a useful exploration tool for development of drilling targets in extensional terranes, as well as for developing geologic models of known geothermal fields. Preliminary analysis of broad step-overs similar to Tuscarora reveals that geothermal activity occurs in a variety of subsidiary structural settings within these regions. In addition, the presence of several high-temperature systems in northeastern Nevada demonstrates the viability of electrical-grade geothermal activity in this region despite low present-day strain rates as indicated by GPS geodetic data. Geothermal exploration potential in northeastern Nevada may therefore be higher than previously recognized.

Decrypting the structural, dynamic, and energetic basis of a monomeric kinesin interacting with a tubulin dimer in three ATPase states by all-atom molecular dynamics simulation.

PubMed

Chakraborty, Srirupa; Zheng, Wenjun

2015-01-27

We have employed molecular dynamics (MD) simulation to investigate, with atomic details, the structural dynamics and energetics of three major ATPase states (ADP, APO, and ATP state) of a human kinesin-1 monomer in complex with a tubulin dimer. Starting from a recently solved crystal structure of ATP-like kinesin-tubulin complex by the Knossow lab, we have used flexible fitting of cryo-electron-microscopy maps to construct new structural models of the kinesin-tubulin complex in APO and ATP state, and then conducted extensive MD simulations (total 400 ns for each state), followed by flexibility analysis, principal component analysis, hydrogen bond analysis, and binding free energy analysis. Our modeling and simulation have revealed key nucleotide-dependent changes in the structure and flexibility of the nucleotide-binding pocket (featuring a highly flexible and open switch I in APO state) and the tubulin-binding site, and allosterically coupled motions driving the APO to ATP transition. In addition, our binding free energy analysis has identified a set of key residues involved in kinesin-tubulin binding. On the basis of our simulation, we have attempted to address several outstanding issues in kinesin study, including the possible roles of β-sheet twist and neck linker docking in regulating nucleotide release and binding, the structural mechanism of ADP release, and possible extension and shortening of α4 helix during the ATPase cycle. This study has provided a comprehensive structural and dynamic picture of kinesin's major ATPase states, and offered promising targets for future mutational and functional studies to investigate the molecular mechanism of kinesin motors.

Integrated geophysical and geological study of the tectonic framework of the 38th parallel lineament in the vicinity of its intersection with the extension of the New Madrid fault zone. Annual progress report, fiscal year 1979

DOE Office of Scientific and Technical Information (OSTI.GOV)

Braile, L.W.; Hinze, W.J.; Sexton, J.L.

1979-09-01

An integrated gravity, magnetic, crustal seismic refraction, and basement geology study is being conducted of the northeastern extension of the New Madrid Fault Zone in the vicinity of the 38th Parallel Lineament. Gravity and magnetic anomaly maps prepared of this area plus regional seismicity suggest that the basement structural feature associated with the New Madrid seismicity extends northeasterly into southern Indiana to at least 39/sup 0/N latitude. Gravity and subsurface data indicate that the Rough Creek Fault Zone, a major element of the 38th Parallel Lineament, is the northern boundary of a complex graben which formed in late Precambrian-early Paleozoicmore » time and since has been reactivated. Surface wave studies indicate that the crustal thickness of the northern Mississippi Embayment is probably in the range of 50 to 55 km, and the structure of the crust obtained from these studies is highly suggestive of a failed rift. 40 figures, 3 tables.« less

Variations in the crustal structure beneath western Turkey

NASA Astrophysics Data System (ADS)

Saunders, Paul; Priestley, Keith; Taymaz, Tuncay

1998-08-01

We use teleseismic receiver functions to investigate the crustal structure at two locations in western Turkey using seismic data recorded on small arrays of temporary broad-band seismographs. The results from these analyses are compared with receiver function results from the GDSN station ANTO on the Anatolian Plateau in central Turkey. The crust is ~ 30 km thick in the region of western Turkey where active normal faulting reveals present-day extension in the upper crust and alkali-basaltic volcanism reveals recent extension within the subcrustal lithosphere The crust is ~ 34 km thick further east where crustal extension is still evident but less pronounced. In the Anatolian Plateau, which is not currently extending, the crust is ~ 38 km thick. The level of extension estimated from these measurements of crustal thickness implies a β -factor of ~ 1.2. This value agrees with the amount of extension estimated in the upper crust from the integrated seismic strain rate (β -factor of ~ 1.3), from surface faulting(β -factor of ~ 1.25) and from the amount of extension in the subcrustal lithosphere estimated from the volcanism (β -factor < 2), all indicating that the extension is approximately uniformly distributed vertically throughout the lithosphere. The Moho transition in this region appears to thin slightly as the degree of extension increases westwards.

Structure and photochromic properties of molybdenum-containing silica gels obtained by molecular-lamination method

DOE Office of Scientific and Technical Information (OSTI.GOV)

Belotserkovskaya, N.G.; Dobychin, D.P.; Pak, V.N.

1992-05-10

The structure and physicochemical properties of molybdenum-containing silica gels obtained by molecular lamination have been studied quite extensively. Up to the present, however, no studies have been made of the influence of the pore structure of the original silica gel on the structure and properties of molybdenum-containing silica gels (MSG). The problem is quite important, since molybdenum silicas obtained by molecular lamination may find applications in catalysis and as sensors of UV radiation. In either case, the structure of the support is not a factor to be ignored. Here, the authors are reporting on an investigation of the structure ofmore » MSG materials with different pore structures and their susceptibility to reduction of the Mo(VI) oxide groupings when exposed to UV radiation. 16 refs., 2 figs., 2 tabs.« less

Tectonics of the West Antarctic rift system: new light on the history and dynamics of distributed intracontinental extension

USGS Publications Warehouse

Siddoway, C.S.

2007-01-01

The West Antarctic rift system (WARS) is the product of multiple stages of intracontinental deformation from Jurassic to Present. The Cretaceous rifting phase accomplished >100 percent extension across the Ross Sea and central West Antarctica, and is widely perceived as a product of pure shear extension orthogonal to the Transantarctic Mountains that led to breakup and opening of the Southern Ocean between West Antarctica and New Zealand. New structural, petrological, and geochronological data from Marie Byrd Land reveal aspects of the kinematics, thermal history, and chronology of the Cretaceous intracontinental extension phase that cannot be readily explained by a single progressive event. Elevated temperatures in "Lachlan-type" crust caused extensive crustal melting and mid-crustal flow within a dextral transcurrent strain environment, leading to rapid extension and locally to exhumation and rapid cooling of a migmatite dome and detachment footwall structures. Peak metamorphism and onset of crustal flow that brought about WARS extension between 105 Ma and 90 Ma is kinematically, temporally, and spatially linked to the active convergent margin system of East Gondwana. West Antarctica-New Zealand breakup is distinguished as a separate event at 83-70 Ma, from the standpoint of kinematics and thermal evolution

α-Viniferin-Induced Structural and Functional Alterations in Raillietina echinobothrida, a Poultry Tapeworm.

PubMed

Roy, Bishnupada; Giri, Bikash R

2015-04-01

α-Viniferin, an active component of the plant Carex baccans L., is known for its anticancer, antidiabetic, and anti-inflammatory properties. In Northeast India, different tribes traditionally consume C. baccans to control intestinal helminth infections. Therefore, the present study was carried out to assess the extent of tegumental alteration caused by α-viniferin in Raillietina echinobothrida, a widely prevalent poultry helminth in northeast India. Helminths were exposed in vitro to various doses of α-viniferin (50, 100, and 200 µM/mL of physiological buffered saline) and their motility and mortality were recorded. Stereoscan observations on the parasite exposed to the active compound showed extensive distortion and destruction of the surface fine topography of the tegument compared with controls. The compound also caused extensive damage to the tegument by disintegration of microtriches, disorganization of muscle bundles, and loss of cellular organelles combined with distortion and disruption of the plasma membrane, nuclear membrane, nucleolus, mitochondrial membrane, and cristae. Histochemical and biochemical studies carried out parasites exposed to α-viniferin revealed a decline in the activity of vital tegumental enzymes like acid phosphatase, alkaline phosphatase, and adenosine triphosphatase. Extensive structural and functional alterations observed in the treated parasites are indicative of efficient cestocidal activity of the compound.

Nonequilibrium phase transitions of sheared colloidal microphases: Results from dynamical density functional theory

NASA Astrophysics Data System (ADS)

Stopper, Daniel; Roth, Roland

2018-06-01

By means of classical density functional theory and its dynamical extension, we consider a colloidal fluid with spherically symmetric competing interactions, which are well known to exhibit a rich bulk phase behavior. This includes complex three-dimensional periodically ordered cluster phases such as lamellae, two-dimensional hexagonally packed cylinders, gyroid structures, or spherical micelles. While the bulk phase behavior has been studied extensively in earlier work, in this paper we focus on such structures confined between planar repulsive walls under shear flow. For sufficiently high shear rates, we observe that microphase separation can become fully suppressed. For lower shear rates, however, we find that, e.g., the gyroid structure undergoes a kinetic phase transition to a hexagonally packed cylindrical phase, which is found experimentally and theoretically in amphiphilic block copolymer systems. As such, besides the known similarities between the latter and colloidal systems regarding the equilibrium phase behavior, our work reveals further intriguing nonequilibrium relations between copolymer melts and colloidal fluids with competing interactions.

The treatment of extensive scalp lesions combining electrons with intensity-modulated photons.

PubMed

Chan, Maria F; Song, Yulin; Burman, Chandra; Chui, Chen S; Schupak, Karen

2006-01-01

This study was to investigate the feasibility and potential benefits of combining electrons with intensity modulated photons (IMRT+e) for patients with extensive scalp lesions. A case of a patient with an extensive scalp lesion, in which the target volume covered the entire front half of the scalp, is presented. This approach incorporated the electron dose into the inverse treatment planning optimization. The resulting doses to the planning target volume (PTV) and relevant critical structures were compared. Thermoluminescent dosimeters (TLD), diodes, and GAFCHROMIC EBT films were used to verify the accuracy of the techniques. The IMRT+e plan produced a superior dose distribution to the patient as compared to the IMRT plan in terms of reduction of the dose to the brain with the same dose conformity and homogeneity in the target volumes. This study showed that IMRT+e is a viable treatment modality for extensive scalp lesions patients. It provides a feasible alternative to existing treatment techniques, resulting in improved homogeneity of dose to the PTV compared to conventional electron techniques and a decrease in dose to the brain compared to photon IMRT alone.

Multiphased extension along continental margins: a case study of the Porcupine Basin, offshore Ireland

NASA Astrophysics Data System (ADS)

Bulois, Cédric; Shannon, Patrick, M.; Manuel, Pubellier; Nicolas, Chamot-Rooke; Louise, Watremez; Jacques, Deverchère

2017-04-01

Mesozoic faulting has been recognised in several Irish sedimentary basins as part of the northward propagation of the Atlantic rift system. However, the contribution of older structural elements remains poorly constrained. The present study documents the succession of extensional phases in the northern part of the Porcupine Basin sensu largo, offshore west of Ireland, in which structural inheritance and fault reactivation is commonly observed. The correlation of 2D and 3D seismic lines with exploration wells enables the precise definition of four overprinted extensional systems that link to specific tectonic stages identified along the Irish margin. The Porcupine Basin opened through a thickened continental crust that evolved during the Palaeozoic with the Caledonian and Variscan orogenic cycles. Extension initiated during the Carboniferous by reactivation of old structures, resulting in the migration of depocentres bounded by E-W, NE-SW and N-S structural trends. Subsequent episodic rifting occurred during several discrete events. The first rift episode, of Late Triassic to Early Jurassic age, is restricted to the North Porcupine Basin and most likely reactivated E-W structures of Caledonian age. Synrift sediments were generally deposited in a littoral setting that progressively deepened through time. The second episode, much more pronounced, occurred during the Upper Jurassic to lowermost Cretaceous (Neocomian). It resulted in shallow to deep marine deposition controlled by structural directions recognised in Caledonian and Variscan terranes. A third rift phase, evidenced by thick clastic deposition, locally occurred during the Aptian and finally died out with the opening of the Bay of Biscay located to the south of the region. A series of extensional megacycles are recognised from seismic unconformities and faulting geometries. Initial extension strongly followed the structural architecture of the continental crust (i.e. ancient folds, thrusts or orogenic fronts). This is interpreted as an effect of orogenic collapse. It was followed by the rifting phase sensu stricto during which the successive extensional megacycles are internally composed of several rift pulses. The first rift pulses are narrow and controlled by numerous faults with deposition in continental conditions. Subsequent deformation progressively passed to more localised normal faulting during which a major deepening occurs in all the rift basins. This results in progressive marine flooding, possible detachment faults and a widening of the rift systems with basinal interconnection. In a more global view, faults stop when abuting either new oceanic basins (e.g. Bay of Biscay) or transversal lineaments (e.g. Caledonian and Variscan trends). Such an evolution implies asymmetry of the overall region and an oceanward propagation of depocentres. Therefore, extension migrates progressively from the initial deformation core by reactivating pre-existing structures and then stops once boundary conditions change.

Strike-slip brittle shear zone from coastal Deccan in and around Mumbai, India: Evidence for N-S extension

NASA Astrophysics Data System (ADS)

Bhattacharya, Gourab; Ayan Misra, Achyuta; Bose, Narayan; Mukherjee, Soumyajit

2013-04-01

An E-W extension separated India from the Seychelles micro-continent at ~ 62 Ma. This post-dated the Deccan volcanic eruptions. However, the structures attributed to this extension lack geometrical quantification, especially in the western Indian coast. The Narmada-Tapi region, ~ 400 Km north of Mumbai, experienced a ~ N-S extension prior to and/or concurrent with the volcanism. Normal faults dip towards W. Sub-horizontal lava flows, slickensides, N-S shear zones etc. have been reported from the western part of the Deccan Large Igneous Province (DLIP). This work, for the first time, identifies and investigates a ~ 20°N strike-slip brittle shear zone, traced for ~ 100 Km along the west coast of India from Mumbai to Murud by fieldworks. The W-block moved north through a dextral-slip. Deformation is more enhanced in the south (near Murud). Field observations reveal Y-planes (~ N20°E; abundant), Riedels (~ 0-N30°E; abundant), anti-Riedels (~ N30-50°W; less abundant), asymmetric elevations (~ N15°E; locally abundant), extension and en-echelon fractures (2 sets: ~N-S and ~E-W) with a single miniature pull-apart basin (~ N-S extension). The E-W fractures reactivated locally and around Murud slipped/faulted ~ N-S dykes. Average directions of paleostress tensors were computed for the regime yielding σ1 (trend = 99°; plunge = 0°), σ2 (trend = 196°; plunge = 90°) and σ3 (trend = 10°; plunge = 0°). Associated strain results convincingly display a dominant N-S extension. It was not possible to establish which set of extensions (i.e. between N-S and E-W) occurred earlier. Alongside E-W extension, structurally weak shear zones might have channelized late-stage intrusions of ~ N-S dykes. The DLIP was not subject to any post-rifting deformations regionally, except isostatic adjustments. Hence, based on available data, we postulate that these two extensions were coevally operating in the late phases of the Deccan eruptions. As the Indian plate drifted NE, the strike-slip brittle shear zone might have been a structural adjustment in response to the E-W extension.

Studies of neutron-rich nuclei far from stability at TRISTAN

DOE Office of Scientific and Technical Information (OSTI.GOV)

Gill, R.L.

The ISOL facility, TRISTAN, is a user facility located at Brookhaven National Laboratory's High Flux Beam Reactor. Short-lived, neutron-rich nuclei, far from stability, are produced by thermal neutron fission of /sup 235/U. An extensive array of experimental end stations are available for nuclear structure studies. These studies are augmented by a variety of long-lived ion sources suitable for use at a reactor facility. Some recent results at TRISTAN are presented as examples of using an ISOL facility to study series of nuclei, whereby an effective means of conducting nuclear structure investigations is available.

A study on the utilization of advanced composites in commercial aircraft wing structure: Executive summary

NASA Technical Reports Server (NTRS)

Watts, D. J.

1978-01-01

The overall wing study objectives are to study and plan the effort by commercial transport aircraft manufacturers to accomplish the transition from current conventional materials and practices to extensive use of advanced composites in wings of aircraft that will enter service in the 1985-1990 time period. Specific wing study objectives are to define the technology and data needed to support an aircraft manufacturer's commitment to utilize composites primary wing structure in future production aircraft and to develop plans for a composite wing technology program which will provide the needed technology and data.

The New FARM Program: A Model for Supporting Diverse Emerging Farmers and Early-Career Extension Professionals

ERIC Educational Resources Information Center

Sirrine, J. R.; Eschbach, Cheryl L.; Lizotte, Erin; Rothwell, N. L.

2016-01-01

As early-career Extension educators challenged by societal, structural, agricultural, and fiscal trends, we designed a multiyear educational program to support the diverse needs of emerging specialty crop producers in northwest Michigan. This article presents outcomes of that program. We explore how Extension professionals can develop impactful…

Vascularization of the trachea in the bottlenose dolphin: comparison with bovine and evidence for evolutionary adaptations to diving

NASA Astrophysics Data System (ADS)

Ballarin, Cristina; Bagnoli, Paola; Peruffo, Antonella; Cozzi, Bruno

2018-04-01

The rigid structure of the mammalian trachea is functional to maintain constant patency and airflow during breathing, but no gas exchange takes place through its walls. The structure of the organ in dolphins shows increased rigidity of the tracheal cartilaginous rings and the presence of vascular lacunae in the submucosa. However, no actual comparison was ever made between the size and capacity of the vascular lacunae of the dolphin trachea and the potentially homologous structures of terrestrial mammals. In the present study, the extension of the lacunae has been compared between the bottlenose dolphin and the bovine, a closely related terrestrial Cetartiodactyla. Our results indicate that the extension of the blood spaces in the submucosa of dolphins is over 12 times larger than in the corresponding structure of the bovines. Furthermore, a microscopic analysis revealed the presence of valve-like structures in the walls of the cetacean lacunae. The huge difference in size suggests that the lacunae are not merely a product of individual physiological plasticity, but may constitute a true adaptive evolutionary character, functional to life in the aquatic environment. The presence of valve-like structures may be related to the regulation of blood flow, and curtail excessive compression under baric stress at depth.

Identifying the Atomic-Level Effects of Metal Composition on the Structure and Catalytic Activity of Peptide-Templated Materials

DOE Office of Scientific and Technical Information (OSTI.GOV)

Merrill, Nicholas A.; McKee, Erik M.; Merino, Kyle C.

2015-10-12

Bioinspired approaches for the formation of metallic nanomaterials have been extensively employed for a diverse range of applications including diagnostics and catalysis. These materials can often be used under sustainable conditions; however, it is challenging to control the material size, morphology, and composition simultaneously. Here we have employed the R5 peptide, which forms a 3D scaffold to direct the size and linear shape of bimetallic PdAu nanomaterials for catalysis. The materials were prepared at varying Pd:Au ratios to probe optimal compositions to achieve maximal catalytic efficiency. These materials were extensively characterized at the atomic level using transmission electron microscopy, extendedmore » X-ray absorption fine structure spectroscopy, and atomic pair distribution function analysis derived from high-energy X-ray diffraction patterns to provide highly resolved structural information. The results confirmed PdAu alloy formation, but also demonstrated that significant surface structural disorder was present. The catalytic activity of the materials was studied for olefin hydrogenation, which demonstrated enhanced reactivity from the bimetallic structures.These results present a pathway to the bioinspired production of multimetallic materials with enhanced properties, which can be assessed via a suite of characterization methods to fully ascertain structure/function relationships.« less

Structural Evolution of central part of the Tuzgolu (Salt Lake) Basin, Central Anatolia, Turkey

NASA Astrophysics Data System (ADS)

Ada, M.; Cemen, I.; Çaptuğ, A.; Demirci, M.; Engin, C.

2017-12-01

The Tuzgolu Basin in Central Anatolia, Turkey, covers low-relief areas located between the Pontide Mountains to the North and Tauride Mountains to the South. The basin started to form as a rift basin during the Late Maastrichtian. The main Tuzgolu-Aksaray fault zone on the eastern margin of the basin and the northwest trending Yeniceoba and Cihanbeyli fault zones on the western margin of the basin were probably developed during that time. The basin has also experienced westward extension in response to westward escape of the Anatolian plate since Late Miocene. Several geologic studies have been conducted in the Tuz Gölü (Salt Lake) Basin and surrounding areas to determine structural and tectono-stratigraphic development of the basin. However, there are still many questions regarding the structural evolution of the basin. The main purpose of this study is to investigate the structural evolution of the central Tuzgolu Basin based on the structural interpretation of available 2-D seismic reflection profiles, well log analysis and construction of structural cross sections. The cross-sections will be based on depth converted seismic lines to determine structural geometry of the faults and folds. A preliminary Petrel project has been prepared using available seismic profiles. Our preliminary structural interpretations suggest that a well-developed rollover anticline was developed with respect to the westward extension in Central Anatolia. The rollover anticline is faulted in its crest area by both down-to-the west and down-to-the east normal faults. The geometry of the main boundary fault at depth still remains in question. We anticipate that this question will be resolved based on depth converted structural cross-sections and their restoration.

Mechanical constraints on fault geometries and structural styles in extensional geologic settings

NASA Astrophysics Data System (ADS)

Hughes, A. N.

2017-12-01

The geologic structures that accommodate crustal extension in various tectonic environments, including rifts basins, passive margins, and gravitational collapse systems, exhibit a wide range of geometric styles. While several previous studies have focused on the mechanical controls on crustal-scale rift margin geometry, less attention has been paid to the role of mechanics in the style of the individual structures or groups of structures that deform the brittle upper crust. The main modes of extensional structures that have been observed—including parallel fault arrays, half-grabens, grabens, and core complexes—inherently imply mechanical conditions that favor their formation, but an exhaustive evaluation of the circumstances that favor the creation of each of these primary types has yet to be explored, and thus is the focus of this study. This issue is addressed through the construction of a series of 2D forward mechanical models using the discrete element modeling approach. With the intent of representing the wide range of realistic geologic circumstances in which these structures form, a suite of models were constructed by varying parameters such as rock section thickness and strength properties, detachment zone friction, thickness, and dip, extension rate, and various boundary conditions such as erosion and syntectonic sedimentation. The results of these models were then evaluated in order to identify the combinations of parameters that favor the development of each of the main structural styles. Furthermore, the ability to interrogate the stress and strain fields in the models helps shed light on the specific mechanisms that give rise to these different manifestations of extensional strain. Application of these insights to interpretations of extensional structures in rift basins will help to provide a useful framework for understanding the connection between the observed structural style in a region and the conditions that gave rise to its occurrence.

Iterative refinement of structure-based sequence alignments by Seed Extension

PubMed Central

Kim, Changhoon; Tai, Chin-Hsien; Lee, Byungkook

2009-01-01

Background Accurate sequence alignment is required in many bioinformatics applications but, when sequence similarity is low, it is difficult to obtain accurate alignments based on sequence similarity alone. The accuracy improves when the structures are available, but current structure-based sequence alignment procedures still mis-align substantial numbers of residues. In order to correct such errors, we previously explored the possibility of replacing the residue-based dynamic programming algorithm in structure alignment procedures with the Seed Extension algorithm, which does not use a gap penalty. Here, we describe a new procedure called RSE (Refinement with Seed Extension) that iteratively refines a structure-based sequence alignment. Results RSE uses SE (Seed Extension) in its core, which is an algorithm that we reported recently for obtaining a sequence alignment from two superimposed structures. The RSE procedure was evaluated by comparing the correctly aligned fractions of residues before and after the refinement of the structure-based sequence alignments produced by popular programs. CE, DaliLite, FAST, LOCK2, MATRAS, MATT, TM-align, SHEBA and VAST were included in this analysis and the NCBI's CDD root node set was used as the reference alignments. RSE improved the average accuracy of sequence alignments for all programs tested when no shift error was allowed. The amount of improvement varied depending on the program. The average improvements were small for DaliLite and MATRAS but about 5% for CE and VAST. More substantial improvements have been seen in many individual cases. The additional computation times required for the refinements were negligible compared to the times taken by the structure alignment programs. Conclusion RSE is a computationally inexpensive way of improving the accuracy of a structure-based sequence alignment. It can be used as a standalone procedure following a regular structure-based sequence alignment or to replace the traditional iterative refinement procedures based on residue-level dynamic programming algorithm in many structure alignment programs. PMID:19589133

Predicting multi-wall structural response to hypervelocity impact using the hull code

NASA Technical Reports Server (NTRS)

Schonberg, William P.

1993-01-01

Previously, multi-wall structures have been analyzed extensively, primarily through experiment, as a means of increasing the meteoroid/space debris impact protection of spacecraft. As structural configurations become more varied, the number of tests required to characterize their response increases dramatically. As an alternative to experimental testing, numerical modeling of high-speed impact phenomena is often being used to predict the response of a variety of structural systems under different impact loading conditions. The results of comparing experimental tests to Hull Hydrodynamic Computer Code predictions are reported. Also, the results of a numerical parametric study of multi-wall structural response to hypervelocity cylindrical projectile impact are presented.

Structural Analysis of Chemokine Receptor–Ligand Interactions

PubMed Central

2017-01-01

This review focuses on the construction and application of structural chemokine receptor models for the elucidation of molecular determinants of chemokine receptor modulation and the structure-based discovery and design of chemokine receptor ligands. A comparative analysis of ligand binding pockets in chemokine receptors is presented, including a detailed description of the CXCR4, CCR2, CCR5, CCR9, and US28 X-ray structures, and their implication for modeling molecular interactions of chemokine receptors with small-molecule ligands, peptide ligands, and large antibodies and chemokines. These studies demonstrate how the integration of new structural information on chemokine receptors with extensive structure–activity relationship and site-directed mutagenesis data facilitates the prediction of the structure of chemokine receptor–ligand complexes that have not been crystallized. Finally, a review of structure-based ligand discovery and design studies based on chemokine receptor crystal structures and homology models illustrates the possibilities and challenges to find novel ligands for chemokine receptors. PMID:28165741

An Integrated Geophysical and Tectonic Study of the Structure and Evolution of the Crust in the Snake River Plain Region, Pacific Northwest

NASA Astrophysics Data System (ADS)

Keller, G. R.; Khatiwada, M.

2016-12-01

The Snake River Plain region in the Pacific Northwest of North America has been the target of a number of recent studies that have revealed further complexities in its structure and tectonic evolution. Based on surface morphology and Late Cenozoic volcanic activity, the Snake River Plain consists of an eastern and western arm (ESRP and WSRP) that are similar in many respects but also quite different in other respects. Thus, its origin, evolution, structural complexities, the role of extension and magmatism in its formation, and the tectonic drivers are still subjects of debate. Numerous seismic studies have specifically focused on the structure of the ESRP and Yellowstone area. However, crustal-scale studies of the WSRP are limited. We added new gravity data to the existing coverage in the WSRP region and undertook a regional, integrated analysis approach that included magnetic, seismic reflection and refraction profiling, receiver function results, geological and geospatial data, and interpreted well logs. Our integrated geophysical modeling focused on the structure of the WSRP. We generated two crustal models across it at locations where the most existing geophysical and geological constraints were available. We observed both differences and similarities in the structure of the WSRP and ESRP. Although, the shallow crustal structures are different, a mid-crustal mafic intrusion is a major source of the high gravity anomaly values. Within the context of recent studies in the surrounding region, the intersection of the two arms of the Snake River Plain emerges as a major element of a complex tectonic intersection that includes the High Lava Plains of eastern Oregon, the Northern Nevada Rift, a southwestern extension of the ESRP into northern Nevada, as well as, faulting and volcanism extending northwestward to connect with the Columbia River Basalts region.

Media effects in modulating the conformational equilibrium of a model compound for tumor necrosis factor converting enzyme inhibition

NASA Astrophysics Data System (ADS)

Banchelli, Martina; Guardiani, Carlo; Sandberg, Robert B.; Menichetti, Stefano; Procacci, Piero; Caminati, Gabriella

2015-07-01

Small-molecule inhibitors of Tumor Necrosis Factor α Converting Enzyme (TACE) are a promising therapeutic tool for Rheumatoid Arthritis, Multiple Sclerosis and other autoimmune diseases. Here we report on an extensive chemical-physical analysis of the media effects in modulating the conformational landscape of MBET306, the common scaffold and a synthetic precursor of a family of recently discovered tartrate-based TACE inhibitors. The structural features of this molecule with potential pharmaceutical applications have been disclosed by interpreting extensive photophysical measurements in various solvents with the aid of enhanced sampling molecular dynamics simulations and time dependent density functional calculations. Using a combination of experimental and computational techniques, the paper provides a general protocol for studying the structure in solution of molecular systems characterized by the existence of conformational metastable states.

Exploring the Alaskan black spruce ecosystem: variability in species composition, ecosystem function, and fire history

Treesearch

T.N. Hollingsworth

2008-01-01

In this overview, I present extensive studies looking at the structure and function of the black spruce (Picea mariana) ecosystem of the boreal region of interior Alaska. One of the studies provides a classification of black spruce communities, the most abundant forest type in the region. Other studies examine large-scale processes that drive this...

Structural Behavior Under Precision Impact Tests

DTIC Science & Technology

1996-08-01

ASPECTS OF IMPACT TESTING The problem of impact between two bodies has been studied extensively (for example, Eibl 1987, Feyerabend 1988, Krauthammer...Concrete for Hazard Protection, Edinburgh, Scotland, pp. 175-186. Feyerabend , M., 1988, "Der harte Querstoss auf Stützen aus Stahl und Stahlbeton

Grower Communication Networks: Information Sources for Organic Farmers

ERIC Educational Resources Information Center

Crawford, Chelsi; Grossman, Julie; Warren, Sarah T.; Cubbage, Fred

2015-01-01

This article reports on a study to determine which information sources organic growers use to inform farming practices by conducting in-depth semi-structured interviews with 23 organic farmers across 17 North Carolina counties. Effective information sources included: networking, agricultural organizations, universities, conferences, Extension, Web…

Supervised extensions of chemography approaches: case studies of chemical liabilities assessment

PubMed Central

2014-01-01

Chemical liabilities, such as adverse effects and toxicity, play a significant role in modern drug discovery process. In silico assessment of chemical liabilities is an important step aimed to reduce costs and animal testing by complementing or replacing in vitro and in vivo experiments. Herein, we propose an approach combining several classification and chemography methods to be able to predict chemical liabilities and to interpret obtained results in the context of impact of structural changes of compounds on their pharmacological profile. To our knowledge for the first time, the supervised extension of Generative Topographic Mapping is proposed as an effective new chemography method. New approach for mapping new data using supervised Isomap without re-building models from the scratch has been proposed. Two approaches for estimation of model’s applicability domain are used in our study to our knowledge for the first time in chemoinformatics. The structural alerts responsible for the negative characteristics of pharmacological profile of chemical compounds has been found as a result of model interpretation. PMID:24868246

Structural Basis for the Entrance into the Phenylpropanoid Metabolism Catalyzed by Phenylalanine Ammonia-Lyase

PubMed Central

Ritter, Holger; Schulz, Georg E.

2004-01-01

Because of its key role in secondary phenylpropanoid metabolism, Phe ammonia-lyase is one of the most extensively studied plant enzymes. To provide a basis for detailed structure–function studies, the enzyme from parsley (Petroselinum crispum) was crystallized, and the structure was elucidated at 1.7-Å resolution. It contains the unusual electrophilic 4-methylidene-imidazole-5-one group, which is derived from a tripeptide segment in two autocatalytic dehydration reactions. The enzyme resembles His ammonia-lyase from the general His degradation pathway but contains 207 additional residues, mainly in an N-terminal extension rigidifying a domain interface and in an inserted α-helical domain restricting the access to the active center. Presumably, Phe ammonia-lyase developed from His ammonia-lyase when fungi and plants diverged from the other kingdoms. A pathway of the catalyzed reaction is proposed in agreement with established biochemical data. The inactivation of the enzyme by a nucleophile is described in detail. PMID:15548745

Extensibility of the myofilaments in vertebrate skeletal muscle as revealed by stretching rigor muscle fibers

PubMed Central

1983-01-01

The extensibility of the myofilaments in vertebrate skeletal muscle was studied by stretching glycerinated rabbit psoas muscle fibers in rigor state and examining the resulting extension of sarcomere structures under an electron microscope. Although stretches applied to rigor fibers produced a successive yielding of the weakest sarcomeres, the length of the remaining intact sarcomeres in many myofibrils was fairly uniform, being definitely longer than the sarcomeres in the control, nonstretched part of rigor fibers. The stretch-induced increase in sarcomere length was found to be taken up by the extension of the H zone and the I band, whereas the amount of overlap between the thick and thin filaments did not change appreciably with stretches of 10-20%. The thick filament extension in the H zone was localized in the bare regions, whereas the thin filament extension in the I band appeared to take place uniformly along the filament length. No marked increase in the Z-line width was observed even with stretches of 20-30%. These results clearly demonstrate the extensibility of the thick and thin filaments. The possible contribution of the myofilament compliance to the series elastic component (SEC) in vertebrate skeletal muscle fibers is discussed on the basis of the electron microscopic data and the force-extension curve of the SEC in rigor fibers. PMID:6682885

Shear fabrics reveal orogen-parallel deformations, NW Lesser Garhwal Himalaya, Uttarakhand, India

NASA Astrophysics Data System (ADS)

Biswas, T.; Bose, N.; Mukherjee, S.

2017-12-01

Shear deformation along the Himalayan belt is poorly understood unlike that across the orogen. Field observations and structural analysis along Bhagirathi river section along the National Highway 34 reveals NW Lesser Himalaya (Garhwal region, India) suffered both compression and extension parallel to the orogenic belt and thus forms a unique venue of great structural and tectonic interest. Meso-scale ductile- and brittle shear fabrics, such as S-C, C-P, Y-P, Y-S; are emphasized describing such deformations. Extensional shear fabric strikes N43oE and compressional shear fabrics N39.5oE, which are at a low-angle with the orogenic trend. Our study reviews orogen parallel deformation, both extension as well as compression, taking examples from other part of the world (e.g., Central Andes, N Apennines and SW Alps) and from other terrains in the Himalaya. Proposed models are evaluated and compared with the study area. The results shows that the pre-existing remnant structures (e.g., the Delhi-Haridwar ridge) on the under-thrusting Indian shield/plate plays a vital role in modifying thin-skinned tectonics along with migration of the eastward extrusion of the Tibetian plateau (hinterland deformation) into the Himalayan foreland.

Tertiary extension and mineral deposits, southwestern U.S.

USGS Publications Warehouse

Rehrig, William A.; Hardy, James.J.

1996-01-01

Starting in Las Vegas, we will traverse through many of the geometric elements and complexities of hanging wall deformation above the regional detachment systems of the Colorado River extensional terrane. We will study the interaction of normal faults as arranged in regional, crustal-scale mega-domains and the bounding structures that separate these tilt domains. As we progress through the classic Eldorado Mountains-Hoover Dam region, where many of the ideas of listric normal faulting were first popularized, we will see both the real rocks and the historic rationale for their deformation. By examining the listric versus domino models for normal faulting, we will utilize different geometric techniques for determining the depth to the detachment structures and percent extension. Continuing further south toward southernmost Nevada, we will cross the accommodation zone that separates the Lake Mead and Whipple dip domains and further descend to deeper structural levels to examine lower levels of the major normal faults and their tilting of upper-crustal blocks and associated offset along the regional detachment faults. Fluid flow within the shattered fault zones and its relationship to the 3-D geometries of the fault surfaces will be studied both along the faults and within the hydrothermally altered and mineralized wallrocks.

The effects of an extensive exercise programme on the progression of Mild Cognitive Impairment (MCI): study protocol for a randomised controlled trial.

PubMed

Devenney, Kate E; Sanders, Marit L; Lawlor, Brian; Olde Rikkert, Marcel G M; Schneider, Stefan

2017-03-22

Exercise interventions to prevent dementia and delay cognitive decline have gained considerable attention in recent years. Human and animal studies have demonstrated that regular physical activity targets brain function by increasing cognitive reserve. There is also evidence of structural changes caused by exercise in preventing or delaying the genesis of neurodegeneration. Although initial studies indicate enhanced cognitive performance in patients with mild cognitive impairment (MCI) following an exercise intervention, little is known about the effect of an extensive, controlled and regular exercise regimen on the neuropathology of patients with MCI. This study aims to determine the effects of an extensive exercise programme on the progression of MCI. This randomised controlled clinical intervention study will take place across three European sites. Seventy-five previously sedentary patients with a clinical diagnosis of MCI will be recruited at each site. Participants will be randomised to one of three groups. One group will receive a standardised 1-year extensive aerobic exercise intervention (3 units of 45 min/week). The second group will complete stretching and toning (non-aerobic) exercise (3 units of 45 min/week) and the third group will act as the control group. Change in all outcomes will be measured at baseline (T0), after six months (T1) and after 12 months (T2). The primary outcome, cognitive performance, will be determined by a neuropsychological test battery (CogState battery, Trail Making Test and Verbal fluency). Secondary outcomes include Montreal Cognitive Assessment (MoCA), cardiovascular fitness, physical activity, structural changes of the brain, quality of life measures and measures of frailty. Furthermore, outcome variables will be related to genetic variations on genes related to neurogenesis and epigenetic changes in these genes caused by the exercise intervention programme. The results will add new insights into the prevailing notion that exercise may slow the rate of cognitive decline in MCI. ClinicalTrials.gov NCT02913053.

Dopant distributions in n-MOSFET structure observed by atom probe tomography.

PubMed

Inoue, K; Yano, F; Nishida, A; Takamizawa, H; Tsunomura, T; Nagai, Y; Hasegawa, M

2009-11-01

The dopant distributions in an n-type metal-oxide-semiconductor field effect transistor (MOSFET) structure were analyzed by atom probe tomography. The dopant distributions of As, P, and B atoms in a MOSFET structure (gate, gate oxide, channel, source/drain extension, and halo) were obtained. P atoms were segregated at the interface between the poly-Si gate and the gate oxide, and on the grain boundaries of the poly-Si gate, which had an elongated grain structure along the gate height direction. The concentration of B atoms was enriched near the edge of the source/drain extension where the As atoms were implanted.

``Loose spins'' in Fe/Cu/Fe(001) structures

NASA Astrophysics Data System (ADS)

Heinrich, B.; Celinski, Z.; Liao, L. X.; From, M.; Cochran, J. F.

1994-05-01

Slonczewski recently proposed a model for the exchange coupling between ferromagnetic layers separated by a nonferromagnetic spacer based on the concept of ``loose spins.'' ``Loose spins'' contribute to the total exchange energy. We have studied the role of ``loose spins'' in bcc Fe/Cu/Fe(001) structures. bcc Fe/Cu/Fe(001) trilayers deposited at room temperature were investigated extensively in our previous studies. In our ``loose spin'' studies, the Fe was added inside the Cu interlayer. Several structures were atomically engineered in order to test the behavior of ``loose spins:'' One additional atomic layer of an (Fe+Cu) alloy were located in appropriate positions in a Cu spacer. The bilinear and biquadratic exchange coupling in the above structures was quantitatively studied with FMR in the temperature range 77-370 K and with MOKE at RT.

Equilibrium vortex structures of type-II/1 superconducting films with washboard pinning landscapes

NASA Astrophysics Data System (ADS)

Wei, C. A.; Xu, X. B.; Xu, X. N.; Wang, Z. H.; Gu, M.

2018-05-01

We numerically study the equilibrium vortex structures of type-II/1 superconducting films with a periodic quasi-one-dimensional corrugated substrate. We show as a function of substrate period and pinning strength that, the vortex system displays a variety of vortex phases including arrays consisted of vortex clumps with different morphologies, ordered vortex stripes parallel and perpendicular to pinning troughs, and ordered one-dimensional vortex chains. Our simulations are helpful in understanding the structural modulations for extensive systems with both competing interactions and competing periodicities.

Pahranagat Shear System, Lincoln County, Nevada

NASA Technical Reports Server (NTRS)

Liggett, M. A. (Principal Investigator); Ehrenspreck, H. E.

1974-01-01

The author has identified the following significant results. A structural model which relates strike-slip deformation to Basin Range extensional tectonics was formulated on the basis of analysis and interpreatation of ERTS-1 MSS imagery over southern Lincoln County, Nevada. Study of published geologic data and field reconnaissance of key areas has been conducted to support the ERTS-1 data interpretation. The structural model suggests that a left-lateral strike-slip fault zone, called the Pahranagat Shear System, formed as a transform fault separating two areas of east-west structural extension.

Life extension of Structural Repairs – A statistical approach towards efficiency improvement

NASA Astrophysics Data System (ADS)

Deepashri, N. V.; Kalaiyappan, Mohan

2018-05-01

The life extension program of aircraft is taken up whenever aircraft’s intended life reaches close to its DSG (Design Service Goal). The Extended Service Goal (ESG) of an aircraft, in general, and structural repairs, in particular, is arrived at on the basis of F&DT (Fatigue & Damage Tolerance) analysis. Life extension program of aircraft consists of assessment of remaining life of all parts of the aircrafts including structural, mechanical, and electrical and avionics equipment and structural repairs. For life extension of stringer repair, as an example, it is required to re-assess the fatigue life of stringer in the presence of coupling under modified load spectrum. This is achieved by assessing the fatigue life of Web and Outer Flange (OF) part of stringers separately as per F&DT justification philosophy. Assessment of the fatigue life requires determination of stress concentration factor (Kt) for different combination of width, pitch, stringer thickness, coupling thickness and pad-up thickness of all stringer profiles available in different sections of fuselage. Determination of stress concentration factor for Web and Outer Flange of stringer profile covering entire ranges involves substantial number of Finite Element (FE) analysis. In order to optimise the number of FE runs, stress concentration factor is determined under worst repair factors combination (max. plate width; max. thickness; max. pitch; min. rivet dia.; and min. No. of rivets) resulting in conservative value. A parametric study of Web and Outer Flange data across stringer profiles were carried out and proven statistical techniques were used to find the optimal equation to predict stress concentration factor. This in turn reduced number of FE runs substantially for a given range of width, pitch, stringer thickness and so on. The use of optimal equation obtained through regression analysis is able to predict Kt within reasonable accuracy for a given range of inputs.

On the Vertical Structure of Seasonal, Interannual and Intraseasonal Flows

DTIC Science & Technology

1992-12-01

regions. Extensive use is made of a primitive equation (PE) model, as a diagnostic tool, to explore the extent to which tropical heating might influence ...vertical modes, while Wiin-Nielsen (1971a and b) studied the time 2 behaviour of long waves for various vertical structures. More recent investigations...nonlinear three-leve PE model, are used to determine the influence of tropical heating on extratropica wave response. In Chapter 4, the interannual changes

A contemporary view of atrioventricular nodal physiology.

PubMed

Markowitz, Steven M; Lerman, Bruce B

2018-06-16

In delaying transmission of the cardiac impulse from the atria to the ventricles, the atrioventricular (AV) node serves a critical function in augmenting ventricular filling during diastole and limiting the ventricular response during atrial tachyarrhythmias. The complex structure of the nodal region, however, also provides the substrate for reentrant rhythms. Recent discoveries have elucidated the cellular basis and anatomical determinants of slow conduction in the node. Based on analysis of gap junction proteins, distinct structural components of the AV node have been defined, including the compact node, right and left inferior nodal extensions, the lower nodal bundle, and transitional tissue. Emerging evidence supports the role of the inferior nodal extensions in mediating slow pathway conduction. The most common form of reentry involving the node, slow-fast AV nodal reentrant tachycardia (AVNRT), utilizes the inferior nodal extensions for anterograde slow pathway conduction; the structures responsible for retrograde fast pathway activation in the superior septum are less well defined and likely heterogeneous. Atypical forms of AVNRT arise from circuits that activate at least one of the inferior extensions in the retrograde direction.

The brittle stage of the exhumation of a metamorphic core complex: Naxos, Cyclades, Greece and some general rules

NASA Astrophysics Data System (ADS)

Neubauer, F.; Cao, S.

2012-04-01

Structures of hangingwall units of major detachment systems in extensional settings leading to metamorphic core complexes are equally important to the generally well-studied footwall rocks. Here, we describe hanging-wall structures of the North-Cycladic Detachment System on Naxos Island of the Aegean Sea and found that they well monitor the structural evolution of hanging blocks complementary to the footwall structures, vertical fluid flow as well as late-stage inversion of the whole extensional system. On Naxos, Upper Oligocene-Miocene and Pliocene sedimentary successions are deposited on the hangingwall unit, which is largely an ophiolite. The Upper Oligocene-Miocene and Pliocene sedimentary successions are separated by a hiatus arguing for a two-step evolution. Whereas the first step, Miocene, indicate moderate subsidence and relief, and only denudation of the hangingwall unit, the Pliocene conglomerates indicate a sharply increasing relief and an over-steepened topography. Hydrothermal systems developed in hangingwall rock succession (e.g. Miocene at Steladia) play an important role and resulted in large-scale silica precipitation and associated alteration similar as these found in subvolcanic epithermal systems. This constrains a close link between footwall granodiorite intrusion and near-surface processes. The Pliocene coarse boulder conglomerate with its abundant first appearance of granite/granodiorite, and subsequent marble-rich debris on distant places like Palatia indicate a sudden erosion and high-gradient relief leading to erosion of the mantle of the migmatite dome during Pliocene. On Naxos, we recognize, therefore, a three-stage tectonic evolution in the hangingwall unit: (i) moderate subsidence of an Upper Oligocene-Miocene basin, in part below sea level; (2) a second stage with deposition of Pliocene coarse conglomerates, and (iii) post-Pliocene faulting affecting the conglomerates. During the second stage, surface exposure of the metamorphic core complex was reached resulting in catastrophic alluvial fans. Structural data from the Upper Oligocene-Miocene rocks indicate that NNE-SSW extension still prevailed up to the Miocene/Pliocene boundary. Together with structural data from Pliocene conglomerates, we can distinguish between three major events: The first stage is characterized by mostly NNE-dipping and subordinate SSW-dipping normal faults indicating together ca. NNE-SSW extension. A second palaeostress tensor group (B) mainly comprises ca. NW-trending dextral and WSW-trending sinistral strike-slip faults indicating together ca. E-W strike-slip compression and monitor, therefore, inversion and compression perpendicular to the previous extension direction. The third palaeostress tensor group (C) is characterized by dominating mostly NE-trending subvertical sinistral strike-slip faults and steep NNW-trending dextral strike-slip faults constituting together ca. N-S strike-slip compression. In a few cases, S- to SW-dipping reverse faults also occur. On a general level, our study allows for the following major conclusions: (1) Structures of hangingwall units of major detachments above metamorphic core complexes are equally important compared to the generally well-studied footwall rocks. They allow date several tectonic events not necessarily found in footwall rocks. (2) On Naxos, we can distinguish between three major tectonic events, which are in accordance with large-scale tectonic processes in the Aegean Sea: (a) ca. NNE-SSW extension; (b) ca. E-W strike-slip compression and monitor therefore inversion and compression perpendicular to the previous extension direction, and (c) N-S strike-slip compression.

Large-scale variation in lithospheric structure along and across the Kenya rift

USGS Publications Warehouse

Prodehl, C.; Mechie, J.; Kaminski, W.; Fuchs, K.; Grosse, C.; Hoffmann, H.; Stangl, R.; Stellrecht, R.; Khan, M.A.; Maguire, Peter K.H.; Kirk, W.; Keller, Gordon R.; Githui, A.; Baker, M.; Mooney, W.; Criley, E.; Luetgert, J.; Jacob, B.; Thybo, H.; Demartin, M.; Scarascia, S.; Hirn, A.; Bowman, J.R.; Nyambok, I.; Gaciri, S.; Patel, J.; Dindi, E.; Griffiths, D.H.; King, R.F.; Mussett, A.E.; Braile, L.W.; Thompson, G.; Olsen, K.; Harder, S.; Vees, R.; Gajewski, D.; Schulte, A.; Obel, J.; Mwango, F.; Mukinya, J.; Riaroh, D.

1991-01-01

The Kenya rift is one of the classic examples of a continental rift zone: models for its evolution range from extension of the lithosphere by pure shear1, through extension by simple shear2, to diapiric upwelling of an asthenolith3. Following a pilot study in 19854, the present work involved the shooting of three seismic refraction and wide-angle reflection profiles along the axis, across the margins, and on the northeastern flank of the rift (Fig. 1). These lines were intended to reconcile the different crustal thickness estimates for the northern and southern parts of the rift4-6 and to reveal the structure across the rift, including that beneath the flanks. The data, presented here, reveal significant lateral variations in structure both along and across the rift. The crust thins along the rift axis from 35 km in the south to 20 km in the north; there are abrupt changes in Mono depth and uppermost-mantle seismic velocity across the rift margins, and crustal thickening across the boundary between the Archaean craton and PanAfrican orogenic belt immediately west of the rift. These results suggest that thickened crust may have controlled the rift's location, that there is a decrease in extension from north to south, and that the upper mantle immediately beneath the rift may contain reservoirs of magma generated at greater depth.

How Differences in Interactions Affect Learning and Development of Design Expertise in the Context of Biomedical Engineering Design

ERIC Educational Resources Information Center

Svihla, Vanessa Lynn

2009-01-01

Authentic design commonly involves teams of designers collaborating on ill-structured problems over extended time periods. Nonetheless, design has been studied extensively in sequestered settings, limiting our understanding of design as process and especially of learning design process. This study addresses potential shortcomings of such studies…

A Systems Approach to Effectiveness in Catholic Elementary Schools: A Replication and Extension

ERIC Educational Resources Information Center

Mitchell, Roxanne M.; Tarter, C. John

2011-01-01

This study replicated an earlier study conducted by Tarter and Hoy (2004) in which an open systems model was used to test a series of hypotheses that explained elements of school performance. Four internal system elements (structure, individual, culture, and politics) of the school were used to explain two sets of school outcomes (student…

Ethnic Classification in Southeastern Puerto Rico: The Cultural Model of "Color"

ERIC Educational Resources Information Center

Gravlee, Clarence C.

2005-01-01

This article presents a systematic ethnographic study of emic ethnic classification in Puerto Rico, including a replication and extension of Marvin Harris's (1970) seminal study in Brazil. I address three questions: (1) what are the core emic categories of color? (2) what dimensions of semantic structure organize this cultural domain? and (3) is…

Enzymes and other agents that enhance cell wall extensibility

NASA Technical Reports Server (NTRS)

Cosgrove, D. J.

1999-01-01

Polysaccharides and proteins are secreted to the inner surface of the growing cell wall, where they assemble into a network that is mechanically strong, yet remains extensible until the cells cease growth. This review focuses on the agents that directly or indirectly enhance the extensibility properties of growing walls. The properties of expansins, endoglucanases, and xyloglucan transglycosylases are reviewed and their postulated roles in modulating wall extensibility are evaluated. A summary model for wall extension is presented, in which expansin is a primary agent of wall extension, whereas endoglucanases, xyloglucan endotransglycosylase, and other enzymes that alter wall structure act secondarily to modulate expansin action.

Artificial barriers prevent genetic recovery of small isolated populations of a low-mobility freshwater fish.

PubMed

Coleman, R A; Gauffre, B; Pavlova, A; Beheregaray, L B; Kearns, J; Lyon, J; Sasaki, M; Leblois, R; Sgro, C; Sunnucks, P

2018-06-01

Habitat loss and fragmentation often result in small, isolated populations vulnerable to environmental disturbance and loss of genetic diversity. Low genetic diversity can increase extinction risk of small populations by elevating inbreeding and inbreeding depression, and reducing adaptive potential. Due to their linear nature and extensive use by humans, freshwater ecosystems are especially vulnerable to habitat loss and fragmentation. Although the effects of fragmentation on genetic structure have been extensively studied in migratory fishes, they are less understood in low-mobility species. We estimated impacts of instream barriers on genetic structure and diversity of the low-mobility river blackfish (Gadopsis marmoratus) within five streams separated by weirs or dams constructed 45-120 years ago. We found evidence of small-scale (<13 km) genetic structure within reaches unimpeded by barriers, as expected for a fish with low mobility. Genetic diversity was lower above barriers in small streams only, regardless of barrier age. In particular, one isolated population showed evidence of a recent bottleneck and inbreeding. Differentiation above and below the barrier (F ST  = 0.13) was greatest in this stream, but in other streams did not differ from background levels. Spatially explicit simulations suggest that short-term barrier effects would not be detected with our data set unless effective population sizes were very small (<100). Our study highlights that, in structured populations, the ability to detect short-term genetic effects from barriers is reduced and requires more genetic markers compared to panmictic populations. We also demonstrate the importance of accounting for natural population genetic structure in fragmentation studies.

Uncovering the determinants of a highly perturbed tyrosine pKa in the active site of ketosteroid isomerase.

PubMed

Schwans, Jason P; Sunden, Fanny; Gonzalez, Ana; Tsai, Yingssu; Herschlag, Daniel

2013-11-05

Within the idiosyncratic enzyme active-site environment, side chain and ligand pKa values can be profoundly perturbed relative to their values in aqueous solution. Whereas structural inspection of systems has often attributed perturbed pKa values to dominant contributions from placement near charged groups or within hydrophobic pockets, Tyr57 of a Pseudomonas putida ketosteroid isomerase (KSI) mutant, suggested to have a pKa perturbed by nearly 4 units to 6.3, is situated within a solvent-exposed active site devoid of cationic side chains, metal ions, or cofactors. Extensive comparisons among 45 variants with mutations in and around the KSI active site, along with protein semisynthesis, (13)C NMR spectroscopy, absorbance spectroscopy, and X-ray crystallography, was used to unravel the basis for this perturbed Tyr pKa. The results suggest that the origin of large energetic perturbations are more complex than suggested by visual inspection. For example, the introduction of positively charged residues near Tyr57 raises its pKa rather than lowers it; this effect, and part of the increase in the Tyr pKa from the introduction of nearby anionic groups, arises from accompanying active-site structural rearrangements. Other mutations with large effects also cause structural perturbations or appear to displace a structured water molecule that is part of a stabilizing hydrogen-bond network. Our results lead to a model in which three hydrogen bonds are donated to the stabilized ionized Tyr, with these hydrogen-bond donors, two Tyr side chains, and a water molecule positioned by other side chains and by a water-mediated hydrogen-bond network. These results support the notion that large energetic effects are often the consequence of multiple stabilizing interactions rather than a single dominant interaction. Most generally, this work provides a case study for how extensive and comprehensive comparisons via site-directed mutagenesis in a tight feedback loop with structural analysis can greatly facilitate our understanding of enzyme active-site energetics. The extensive data set provided may also be a valuable resource for those wishing to extensively test computational approaches for determining enzymatic pKa values and energetic effects.

Uncovering the Determinants of a Highly Perturbed Tyrosine pKa in the Active Site of Ketosteroid Isomerase†

PubMed Central

Schwans, Jason P.; Sunden, Fanny; Gonzalez, Ana; Tsai, Yingssu; Herschlag, Daniel

2013-01-01

Within the idiosyncratic enzyme active site environment, side chain and ligand pKa values can be profoundly perturbed relative to their values in aqueous solution. Whereas structural inspection of systems has often attributed perturbed pKa values to dominant contributions from placement near to charged groups or within hydrophobic pockets, Tyr57 of a P. putida ketosteroid isomerase (KSI) mutant, suggested to have a pKa perturbed by nearly 4 units to 6.3, is situated within a solvent-exposed active site devoid of cationic side chains, metal ions, or cofactors. Extensive comparisons among 45 variants with mutations in and around the KSI active site, along with protein semi-synthesis, 13C NMR spectroscopy, absorbance spectroscopy, and x-ray crystallography, was used to unravel the basis for this perturbed Tyr pKa. The results suggest that the origin of large energetic perturbations are more complex than suggested by visual inspection. For example, the introduction of positively charged residues near Tyr57 raises its pKa rather than lowers it; this effect, and part of the increase in the Tyr pKa from introduction of nearby anionic groups arise from accompanying active site structural rearrangements. Other mutations with large effects also cause structural perturbations or appear to displace a structured water molecule that is part of a stabilizing hydrogen bond network. Our results lead to a model in which three hydrogen bonds are donated to the stabilized ionized Tyr, with these hydrogen bond donors, two Tyr side chains and a water molecule, positioned by other side chains and by a water-mediated hydrogen bond network. These results support the notion that large energetic effects are often the consequence of multiple stabilizing interactions, rather than a single dominant interaction. Most generally, this work provides a case study for how extensive and comprehensive comparisons via site-directed mutagenesis in a tight feedback loop with structural analysis can greatly facilitate our understanding of enzyme active site energetics. The extensive dataset provided may also be a valuable resource for those wishing to extensively test computational approaches for determining enzymatic pKa values and energetic effects. PMID:24151972

ent-Kaurane Glycosides from Tricalysia okelensis

USDA-ARS?s Scientific Manuscript database

Tricalysia is a genus of the plant family Rubiaceae, with approximately 50 species distributed in subtropical and tropical areas in Asia and Africa, some of these used as folk medicine.1,2) Extensive phytochemical studies on Tricalysia dubia led to the isolation of a number of structurally diverse d...

A new biflavonyloxymethane from Pongamia pinnata.

PubMed

Ghosh, Anindita; Mandal, Suvra; Banerji, Avijit; Banerji, Julie

2010-08-01

The root bark of Pongamia pinnata Pierre Syn Pongamia glabra (Family: Fabaceae) has afforded a new biflavonyloxymethane, karanjabiflavone, along with a known furanoflavone, pongapin. The structure of this new biflavonyloxymethane was elucidated from extensive spectral studies including 2D-NMR experiments. Both of these compounds possess antioxidant activity.

The Problems of Contemporary Education

ERIC Educational Resources Information Center

Akar, Hüseyin; Dogan, Yildiz Burcu; Üstüner, Mehmet

2018-01-01

This research aimed to investigate the relationships between positive and negative perfectionisms, self-handicapping, self-efficacy and academic achievement. For this purpose, an extensive literature review was conducted and a model was suggested. Structural equation model was employed to test the model. The study group of the research consisted…

Determinants of Computer Utilization by Extension Personnel: A Structural Equations Approach

ERIC Educational Resources Information Center

Sivakumar, Paramasivan Sethuraman; Parasar, Bibudha; Das, Raghu Nath; Anantharaman, Mathevanpillai

2014-01-01

Purpose: Information technology (IT) has tremendous potential for fostering grassroots development and the Indian government has created various capital-intensive computer networks to promote agricultural development. However, research studies have shown that information technology investments are not always translated into productivity gains due…

Cottonseed meal-based wood adhesives for non-structural interior applications

USDA-ARS?s Scientific Manuscript database

The interests on biobased wood adhesives have steadily increased in recent years. Whereas soy-based adhesives have been extensively explored, there are very limited studies of cottonseed meal products as wood adhesives. We investigated the bonding performance of water-washed cottonseed meal (WCSM) a...

DOE Office of Scientific and Technical Information (OSTI.GOV)

Not Available

This report contains viewgraphs on the following topics. The advanced light source U8 undulator beamline, 20--300 eV; gas-phase actinide studies with synchrotron radiation; atomic structure calculations for heavy atoms; flux growth of single crystal uranium intermetallics: Extension to transuranics; x-ray absorption near-edge structure studies of actinide compounds; surface as a new stage for studying actinides: Theoretical study of the surface electronic structure of uranium; magnetic x-ray scattering experiments at resonant energies; beamline instruments for radioactive materials; the search for x-ray absorption magnetic circular dichroism in actinide materials: preliminary experiments using UFe[sub 2] and U-S; the laser plasma laboratory light source:more » a source of preliminary transuranic data; electron spectroscopy of heavy fermion actinide materials; study of thin layers of actinides. Present status and future use of synchrotron radiation; electronic structure and correlated-electron theory for actinide materials; and heavy fermion and kondo phenomena in actinide materials.« less

DOE Office of Scientific and Technical Information (OSTI.GOV)

Not Available

This report contains viewgraphs on the following topics. The advanced light source U8 undulator beamline, 20--300 eV; gas-phase actinide studies with synchrotron radiation; atomic structure calculations for heavy atoms; flux growth of single crystal uranium intermetallics: Extension to transuranics; x-ray absorption near-edge structure studies of actinide compounds; surface as a new stage for studying actinides: Theoretical study of the surface electronic structure of uranium; magnetic x-ray scattering experiments at resonant energies; beamline instruments for radioactive materials; the search for x-ray absorption magnetic circular dichroism in actinide materials: preliminary experiments using UFe{sub 2} and U-S; the laser plasma laboratory light source:more » a source of preliminary transuranic data; electron spectroscopy of heavy fermion actinide materials; study of thin layers of actinides. Present status and future use of synchrotron radiation; electronic structure and correlated-electron theory for actinide materials; and heavy fermion and kondo phenomena in actinide materials.« less

Quantum Information as a Non-Kolmogorovian Generalization of Shannon's Theory

NASA Astrophysics Data System (ADS)

Holik, Federico; Bosyk, Gustavo; Bellomo, Guido

2015-10-01

In this article we discuss the formal structure of a generalized information theory based on the extension of the probability calculus of Kolmogorov to a (possibly) non-commutative setting. By studying this framework, we argue that quantum information can be considered as a particular case of a huge family of non-commutative extensions of its classical counterpart. In any conceivable information theory, the possibility of dealing with different kinds of information measures plays a key role. Here, we generalize a notion of state spectrum, allowing us to introduce a majorization relation and a new family of generalized entropic measures.

Solid-State NMR Studies Reveal Native-like β-Sheet Structures in Transthyretin Amyloid

DOE Office of Scientific and Technical Information (OSTI.GOV)

Lim, Kwang Hun; Dasari, Anvesh K. R.; Hung, Ivan

Structural characterization of amyloid rich in cross-β structures is crucial for unraveling the molecular basis of protein misfolding and amyloid formation associated with a wide range of human disorders. Elucidation of the β-sheet structure in noncrystalline amyloid has, however, remained an enormous challenge. Here we report structural analyses of the β-sheet structure in a full-length transthyretin amyloid using solid-state NMR spectroscopy. Magic-angle-spinning (MAS) solid-state NMR was employed to investigate native-like β-sheet structures in the amyloid state using selective labeling schemes for more efficient solid-state NMR studies. Analyses of extensive long-range 13 C- 13 C correlation MAS spectra obtained with selectivelymore » 13 CO- and 13 Cα-labeled TTR reveal that the two main β-structures in the native state, the CBEF and DAGH β-sheets, remain intact after amyloid formation. The tertiary structural information would be of great use for examining the quaternary structure of TTR amyloid.« less

Solid-State NMR Studies Reveal Native-like β-Sheet Structures in Transthyretin Amyloid

DOE PAGES

Lim, Kwang Hun; Dasari, Anvesh K. R.; Hung, Ivan; ...

2016-09-02

Structural characterization of amyloid rich in cross-β structures is crucial for unraveling the molecular basis of protein misfolding and amyloid formation associated with a wide range of human disorders. Elucidation of the β-sheet structure in noncrystalline amyloid has, however, remained an enormous challenge. Here we report structural analyses of the β-sheet structure in a full-length transthyretin amyloid using solid-state NMR spectroscopy. Magic-angle-spinning (MAS) solid-state NMR was employed to investigate native-like β-sheet structures in the amyloid state using selective labeling schemes for more efficient solid-state NMR studies. Analyses of extensive long-range 13 C- 13 C correlation MAS spectra obtained with selectivelymore » 13 CO- and 13 Cα-labeled TTR reveal that the two main β-structures in the native state, the CBEF and DAGH β-sheets, remain intact after amyloid formation. The tertiary structural information would be of great use for examining the quaternary structure of TTR amyloid.« less

Structural optimization of mangiferin binding to cancer molecular targets: a guide for synthetic derivatization.

PubMed

Taiwo, Bamigboye J; Olubiyi, Olujide O; van Heerden, Fanie R

2018-03-20

Nigerian medicinal plants have been demonstrated to be veritable source of lead compounds for drug discovery efforts. One such example is mangiferin. Mangiferin was originally isolated from the Nigerian plant Ceiba pentandra (Mombacaceae), after which its structure was elucidated with the aid of spectroscopy. Mangiferin, a xanthone glycoside, has also been reported in certain other plant families including Gentianaceae and Anacardiaceae. In certain other climes and different parts of the world, folkloric and traditional medicine has extensively employed Mangifera indica (another source of mangiferin) in treating different diseases. For many of such cultural uses carefully designed experimental investigations have been conducted confirming mangiferin's efficacies in those different pathologies which have included but not limited to cytotoxic as well as chemopreventive properties in selected cancer cell lines. In this study, computational techniques were employed to profile the interaction of the xanthone glycoside at the atomistic level against nine selected molecular targets with clinical relevance in tumorigenesis. In attempt to investigate the potential of the mangiferin structure as a viable starting point for synthetic exploration of mangiferin-based analogs, extensive structural modifications were performed. By analyzing the resulting structure-energetic pattern, critical points capable of improving mangiferin interaction with the profiled targets were identified. The outcome of this study provides both direction and impetus for synthetic derivitization of the mangiferin molecule into novel optimized inhibitors for anticancer lead development. Copyright© Bentham Science Publishers; For any queries, please email at epub@benthamscience.org.

A Sequence-Independent, Unstructured Internal Ribosome Entry Site Is Responsible for Internal Expression of the Coat Protein of Turnip Crinkle Virus

PubMed Central

May, Jared; Johnson, Philip; Saleem, Huma

2017-01-01

ABSTRACT To maximize the coding potential of viral genomes, internal ribosome entry sites (IRES) can be used to bypass the traditional requirement of a 5′ cap and some/all of the associated translation initiation factors. Although viral IRES typically contain higher-order RNA structure, an unstructured sequence of about 84 nucleotides (nt) immediately upstream of the Turnip crinkle virus (TCV) coat protein (CP) open reading frame (ORF) has been found to promote internal expression of the CP from the genomic RNA (gRNA) both in vitro and in vivo. An absence of extensive RNA structure was predicted using RNA folding algorithms and confirmed by selective 2′-hydroxyl acylation analyzed by primer extension (SHAPE) RNA structure probing. Analysis of the IRES region in vitro by use of both the TCV gRNA and reporter constructs did not reveal any sequence-specific elements but rather suggested that an overall lack of structure was an important feature for IRES activity. The CP IRES is A-rich, independent of orientation, and strongly conserved among viruses in the same genus. The IRES was dependent on eIF4G, but not eIF4E, for activity. Low levels of CP accumulated in vivo in the absence of detectable TCV subgenomic RNAs, strongly suggesting that the IRES was active in the gRNA in vivo. Since the TCV CP also serves as the viral silencing suppressor, early translation of the CP from the viral gRNA is likely important for countering host defenses. Cellular mRNA IRES also lack extensive RNA structures or sequence conservation, suggesting that this viral IRES and cellular IRES may have similar strategies for internal translation initiation. IMPORTANCE Cap-independent translation is a common strategy among positive-sense, single-stranded RNA viruses for bypassing the host cell requirement of a 5′ cap structure. Viral IRES, in general, contain extensive secondary structure that is critical for activity. In contrast, we demonstrate that a region of viral RNA devoid of extensive secondary structure has IRES activity and produces low levels of viral coat protein in vitro and in vivo. Our findings may be applicable to cellular mRNA IRES that also have little or no sequences/structures in common. PMID:28179526

Crustal Seismic Structure beneath Portugal (Western Iberia) and the role of Variscan Inheritance

NASA Astrophysics Data System (ADS)

Veludo, Idalina; Afonso Dias, Nuno; Fonseca, Paulo; Matias, Luís; Carrilho, Fernando; Haberland, Christian; Villaseñor, Antonio

2017-04-01

Mainland Portugal comprises most of the Western portion of the Iberian Peninsula, in a geodynamic setting associated with the Africa-Eurasia plate boundary. The crustal structure in Portugal is the result of a complex assemblage history of continental collision and extension with most of the surface is covered by rocks dating to the Variscan orogeny, the coastal ranges dominated by Mesozoic structures and Mesocenozoic basins covering partially the mainland. The impact and extension of this complex tectonic in the structure of the Iberian Lithosphere is still a matter of discussion, especially in its western part beneath Portugal. The existing knowledge relating the observed surface geology and lithospheric structures is sparse and sometimes incoherent, the relation between shallow and deep structures and their lateral extension still widely undetermined. Some questions still pertinent are the role and influence of the several tectonic units and their contacts in the present tectonic regime and in the stress field observed today, and the relation between the anomalous seismicity and associated crustal deformation rates with the inherited structure from past orogenies. In this study we present the results of a local earthquake tomographic study, performed to image this complex crustal structure down to 20 km depth. The relocation of the onshore seismicity recorded in the period 2000-2014 with the new 3D model allows cleansing some of the alignments and their correlation with some of the main active structures in Portugal enabling for the first time to correlate a large number of tectonic features to the small magnitude seismicity pattern. The seismicity distribution also displays a complex pattern, mainly reflecting the interaction between inherited Variscan structures with more recent fault systems created during the rifting stages of the Atlantic and diapir magmatic intrusions. The complex history of the assemblage of the crust beneath Western Iberia is well-marked in the final models. The arcuate shape of the Ibero-Armorican Arc can be perceived over the general pattern of the Vp and Vp/Vs anomalies and the heterogeneity observed on the surface geology are clearly marked in the tomograms. Other significant features are the low Vp values associated with the Mesocenozoic rocks outcropping in the Lusitanian and Algarve basins, and the low Vp and high Vp/Vs values of the sedimentary cover of the Lower-Tagus and Sado Basin. Publication supported by FCT- project UID/GEO/50019/2013 - Instituto Dom Luiz.

Generalized derivation extensions of 3-Lie algebras and corresponding Nambu-Poisson structures

NASA Astrophysics Data System (ADS)

Song, Lina; Jiang, Jun

2018-01-01

In this paper, we introduce the notion of a generalized derivation on a 3-Lie algebra. We construct a new 3-Lie algebra using a generalized derivation and call it the generalized derivation extension. We show that the corresponding Leibniz algebra on the space of fundamental objects is the double of a matched pair of Leibniz algebras. We also determine the corresponding Nambu-Poisson structures under some conditions.

MindSeer: a portable and extensible tool for visualization of structural and functional neuroimaging data

PubMed Central

Moore, Eider B; Poliakov, Andrew V; Lincoln, Peter; Brinkley, James F

2007-01-01

Background Three-dimensional (3-D) visualization of multimodality neuroimaging data provides a powerful technique for viewing the relationship between structure and function. A number of applications are available that include some aspect of 3-D visualization, including both free and commercial products. These applications range from highly specific programs for a single modality, to general purpose toolkits that include many image processing functions in addition to visualization. However, few if any of these combine both stand-alone and remote multi-modality visualization in an open source, portable and extensible tool that is easy to install and use, yet can be included as a component of a larger information system. Results We have developed a new open source multimodality 3-D visualization application, called MindSeer, that has these features: integrated and interactive 3-D volume and surface visualization, Java and Java3D for true cross-platform portability, one-click installation and startup, integrated data management to help organize large studies, extensibility through plugins, transparent remote visualization, and the ability to be integrated into larger information management systems. We describe the design and implementation of the system, as well as several case studies that demonstrate its utility. These case studies are available as tutorials or demos on the associated website: . Conclusion MindSeer provides a powerful visualization tool for multimodality neuroimaging data. Its architecture and unique features also allow it to be extended into other visualization domains within biomedicine. PMID:17937818

MindSeer: a portable and extensible tool for visualization of structural and functional neuroimaging data.

PubMed

Moore, Eider B; Poliakov, Andrew V; Lincoln, Peter; Brinkley, James F

2007-10-15

Three-dimensional (3-D) visualization of multimodality neuroimaging data provides a powerful technique for viewing the relationship between structure and function. A number of applications are available that include some aspect of 3-D visualization, including both free and commercial products. These applications range from highly specific programs for a single modality, to general purpose toolkits that include many image processing functions in addition to visualization. However, few if any of these combine both stand-alone and remote multi-modality visualization in an open source, portable and extensible tool that is easy to install and use, yet can be included as a component of a larger information system. We have developed a new open source multimodality 3-D visualization application, called MindSeer, that has these features: integrated and interactive 3-D volume and surface visualization, Java and Java3D for true cross-platform portability, one-click installation and startup, integrated data management to help organize large studies, extensibility through plugins, transparent remote visualization, and the ability to be integrated into larger information management systems. We describe the design and implementation of the system, as well as several case studies that demonstrate its utility. These case studies are available as tutorials or demos on the associated website: http://sig.biostr.washington.edu/projects/MindSeer. MindSeer provides a powerful visualization tool for multimodality neuroimaging data. Its architecture and unique features also allow it to be extended into other visualization domains within biomedicine.

Structural mapping from MSS-LANDSAT imagery: A proposed methodology for international geological correlation studies

NASA Technical Reports Server (NTRS)

Dejesusparada, N. (Principal Investigator); Crepani, E.; Martini, P. R.

1980-01-01

A methodology is proposed for international geological correlation studies based on LANDSAT-MSS imagery, Bullard's model of continental fit and compatible structural trends between Northeast Brazil and the West African counterpart. Six extensive lineaments in the Brazilian study area are mapped and discussed according to their regional behavior and in relation to the adjacent continental margin. Among the first conclusions, correlations were found between the Sobral Pedro II Lineament and the megafaults that surround the West African craton; and the Pernambuco Lineament with the Ngaurandere Linemanet in Cameroon. Ongoing research to complete the methodological stages includes the mapping of the West African structural framework, reconstruction of the pre-drift puzzle, and an analysis of the counterpart correlations.

Determinants of cation transport selectivity: Equilibrium binding and transport kinetics

PubMed Central

2015-01-01

The crystal structures of channels and transporters reveal the chemical nature of ion-binding sites and, thereby, constrain mechanistic models for their transport processes. However, these structures, in and of themselves, do not reveal equilibrium selectivity or transport preferences, which can be discerned only from various functional assays. In this Review, I explore the relationship between cation transport protein structures, equilibrium binding measurements, and ion transport selectivity. The primary focus is on K+-selective channels and nonselective cation channels because they have been extensively studied both functionally and structurally, but the principles discussed are relevant to other transport proteins and molecules. PMID:26078056

Sesquiterpenoids from roots of Taraxacum laevigatum and Taraxacum disseminatum.

PubMed

Zielińiska, K; Kisiel, W

2000-08-01

Chromatographic separation of ethanolic root extracts of Taraxacum laevigatum and Taraxacum disseminatum afforded a total of eight germacrane- and eudesmane-type sesquiterpenoids. including new compounds, 1beta,3beta,6alpha-trihydroxy-4alpha( 15)-dihydrocostic acid methyl ester and its 1-O-beta-glucopyranoside. Their structures were established by spectroscopic analyses. In addition, the structure of 4alpha(15), 11beta(13)-tetrahydroridentin B-1-O-beta-glucopyranoside was elucidated by extensive NMR studies.

Three-residue turns in alpha/beta-peptides and their application in the design of tertiary structures.

PubMed

Sharma, Gangavaram V M; Nagendar, Pendem; Ramakrishna, Kallaganti V S; Chandramouli, Nagula; Choudhary, Madavi; Kunwar, Ajit C

2008-06-02

A new three-residue turn was serendipitously discovered in alpha/beta hybrid peptides derived from alternating C-linked carbo-beta-amino acids (beta-Caa) and L-Ala residues. The three-residue beta-alpha-beta turn at the C termini, nucleated by a helix at the N termini, resulted in helix-turn (HT) supersecondary structures in these peptides. The turn in the HT motif is stabilized by two H bonds-CO(i-2)-NH(i), with a seven-membered pseudoring (gamma turn) in the backward direction, and NH(i-2)-CO(i), with a 13-membered pseudoring in the forward direction (i being the last residue)--at the C termini. The study was extended to generalize the new three-residue turn (beta-alpha-beta) by using different alpha- and beta-amino acids. Furthermore, the HT motifs were efficiently converted, by an extension with helical oligomers at the C termini, into peptides with novel helix-turn-helix (HTH) tertiary structures. However, this resulted in the destabilization of the beta-alpha-beta turn with the concomitant nucleation of another three-residue turn, alpha-beta-beta, which is stabilized by 11- and 15-membered bifurcated H bonds. Extensive NMR spectroscopic studies were carried out to delineate the secondary and tertiary structures in these peptides, which are further supported by molecular dynamics (MD) investigations.

Commerce, Research and Education: Contributions and Challenges of Marine Extension Work in NOAA Sea Grant Program-Puerto Rico, Michigan and National office

NASA Astrophysics Data System (ADS)

Aleman Diaz, A.

2006-12-01

The National Sea Grant program represents NOAA's nationwide university-based program in support of coastal resource use and conservation. This program is composed of 30 university-based programs that work with local coastal communities. This study focuses on a historical and multi-sited ethnographic approach that analyzes two Sea Grant Programs and their connection to the overarching NOAA national goals from 1980- 2000.The project aims to offer insight on how the extension agent position facilitates the resolution of coastal and marine management and tourism issues. The extension agents are staff who have an extensive knowledge of available coastal resources and have the role of translating this information to coastal stakeholders. Additionally, these agents assess the needs of coastal communities and report back to the program making their role into a position that can effectively alter and/or contribute to institutional and environmental management programs at broader, cross-country and global levels. The extension programs in Michigan and Puerto Rico were examined to understand how local programs respond to cultural and regional processes shaping marine extension and the management of issues faced by coastal stakeholders. A total of 36 semi- structured in-depth interviews were completed at each site, to address the following questions: (1) How do extension agents view their role at the Puerto Rico and Michigan offices and in the Sea Grant program? How do they view the conditions of their work? (2) How do their views compare to the accomplishments by each Sea Grant administration and internal inquiries? How do their views reveal conditions documented in Puerto Rico and Michigan (e.g., social, cultural, political, economic, etc)? (3) What kind of strategies do agents develop for the management of specific coastal and tourism related projects? (4) How do the Puerto Rico and Michigan offices coordinate their work, and collaborate with other "college" programs and with the National office? Although differences based on organizational structure were evident, there were similarities regarding the marine extension work history, practices, and challenges among these local programs. Preliminary findings suggests that current challenges for Sea Grant marine extension include maintenance of non- advocacy and mediation roles among coastal stakeholders, their positioning relative to research especially conducting and delivering of science to public, and development of their multi-faceted skills sets essential to extension. Simultaneously, the Sea Grant program and marine extension agents provide comprehensive ways for integrated resource management like avenues for dialogue and information-technology transfer with bottom up approaches.

Extension of lattice cluster theory to strongly interacting, self-assembling polymeric systems.

PubMed

Freed, Karl F

2009-02-14

A new extension of the lattice cluster theory is developed to describe the influence of monomer structure and local correlations on the free energy of strongly interacting and self-assembling polymer systems. This extension combines a systematic high dimension (1/d) and high temperature expansion (that is appropriate for weakly interacting systems) with a direct treatment of strong interactions. The general theory is illustrated for a binary polymer blend whose two components contain "sticky" donor and acceptor groups, respectively. The free energy is determined as an explicit function of the donor-acceptor contact probabilities that depend, in turn, on the local structure and both the strong and weak interactions.

Poisson structure of dynamical systems with three degrees of freedom

NASA Astrophysics Data System (ADS)

Gümral, Hasan; Nutku, Yavuz

1993-12-01

It is shown that the Poisson structure of dynamical systems with three degrees of freedom can be defined in terms of an integrable one-form in three dimensions. Advantage is taken of this fact and the theory of foliations is used in discussing the geometrical structure underlying complete and partial integrability. Techniques for finding Poisson structures are presented and applied to various examples such as the Halphen system which has been studied as the two-monopole problem by Atiyah and Hitchin. It is shown that the Halphen system can be formulated in terms of a flat SL(2,R)-valued connection and belongs to a nontrivial Godbillon-Vey class. On the other hand, for the Euler top and a special case of three-species Lotka-Volterra equations which are contained in the Halphen system as limiting cases, this structure degenerates into the form of globally integrable bi-Hamiltonian structures. The globally integrable bi-Hamiltonian case is a linear and the SL(2,R) structure is a quadratic unfolding of an integrable one-form in 3+1 dimensions. It is shown that the existence of a vector field compatible with the flow is a powerful tool in the investigation of Poisson structure and some new techniques for incorporating arbitrary constants into the Poisson one-form are presented herein. This leads to some extensions, analogous to q extensions, of Poisson structure. The Kermack-McKendrick model and some of its generalizations describing the spread of epidemics, as well as the integrable cases of the Lorenz, Lotka-Volterra, May-Leonard, and Maxwell-Bloch systems admit globally integrable bi-Hamiltonian structure.

Integrating sequence and structural biology with DAS

PubMed Central

Prlić, Andreas; Down, Thomas A; Kulesha, Eugene; Finn, Robert D; Kähäri, Andreas; Hubbard, Tim JP

2007-01-01

Background The Distributed Annotation System (DAS) is a network protocol for exchanging biological data. It is frequently used to share annotations of genomes and protein sequence. Results Here we present several extensions to the current DAS 1.5 protocol. These provide new commands to share alignments, three dimensional molecular structure data, add the possibility for registration and discovery of DAS servers, and provide a convention how to provide different types of data plots. We present examples of web sites and applications that use the new extensions. We operate a public registry of DAS sources, which now includes entries for more than 250 distinct sources. Conclusion Our DAS extensions are essential for the management of the growing number of services and exchange of diverse biological data sets. In addition the extensions allow new types of applications to be developed and scientific questions to be addressed. The registry of DAS sources is available at PMID:17850653

Correlation of In Situ Measurements of Plasma Irregularities with Ground-Based Scintillation Observations

DTIC Science & Technology

2010-06-01

extensive case study of the relationships between the observation of in situ irregularities, UHF scintillation observed by the Scin - tillation Decision...use these space-based measurements, however, the correlation between the structures and the resulting scin - tillation must be quantified. [10] As a

Student Success Skills: A Structured Group Intervention for School Counselors

ERIC Educational Resources Information Center

Webb, Linda; Brigman, Greg A.

2007-01-01

This article describes the Student Success Skills (SSS) small group intervention developed for school counselors targeting academic outcomes. The SSS program is based on extensive reviews of research about the skills students need to be successful. Studies supporting program effectiveness are briefly reviewed and show consistent patterns of…

The Open Curriculum and Selection of Qualified Staff: Instrument Validation.

ERIC Educational Resources Information Center

Greene, John F.; And Others

The impact of open education on today's curriculum has been extensive. Of the many requests for research in this area, none is more important than instrument validation. This study examines the internal structure of Barth's Assumptions about Learning and Knowledge scale and explores its relationship to established "progressivism" and…

The Development of Executive Functions and Early Mathematics: A Dynamic Relationship

ERIC Educational Resources Information Center

Van der Ven, Sanne H. G.; Kroesbergen, Evelyn H.; Boom, Jan; Leseman, Paul P. M.

2012-01-01

Background: The relationship between executive functions and mathematical skills has been studied extensively, but results are inconclusive, and how this relationship evolves longitudinally is largely unknown. Aim: The aim was to investigate the factor structure of executive functions in inhibition, shifting, and updating; the longitudinal…

The Heuristics of Statistical Argumentation: Scaffolding at the Postsecondary Level

ERIC Educational Resources Information Center

Pardue, Teneal Messer

2017-01-01

Language plays a key role in statistics and, by extension, in statistics education. Enculturating students into the practice of statistics requires preparing them to communicate results of data analysis. Statistical argumentation is one way of providing structure to facilitate discourse in the statistics classroom. In this study, a teaching…

Applications of positron annihilation spectroscopy in materials research

NASA Technical Reports Server (NTRS)

Singh, Jag J.

1988-01-01

Positron Annihilation Spectroscopy (PAS) has emerged as a powerful technique for research in condensed matter. It has been used extensively in the study of metals, ionic crystals, glasses and polymers. The present review concentrates on applications of positron lifetime measurements for elucidation of the physicochemical structure of polymers.

An Intelligent Recommendation System for Animation Scriptwriters' Education

ERIC Educational Resources Information Center

Tsai, Shang-Te; Chang, Ting-Cheng; Huang, Yu-Feng

2016-01-01

Producing an animation requires extensive labor, time, and money. Experienced directors and screenwriters are required to design scenes using standard props and actors in position. This study structurally analyzes the script and defines scenes, characters, positions, dialogue, etc., according to their dramatic attributes. These are entered into a…

The effect of Gossypolone on the growth and development of Helicoverpa zea (Boddie)

USDA-ARS?s Scientific Manuscript database

The pigment glands of the cotton plant (Gossypium) produce a group of structurally related terpenoid aldehydes that protect the plant from herbivorous insects. Of these terpenoids, the most extensively studied is gossypol. Gossypolone, a compound closely related to gossypol, has been reported in t...

[The use of structural proximal tibial allografts coated with human albumin in treating extensive periprosthetic knee-joint bone deficiency and averting late complications. Case report].

PubMed

Klára, Tamás; Csönge, Lajos; Janositz, Gábor; Pap, Károly; Lacza, Zsombor

2015-01-11

The authors report the history of a 74-year-old patient who underwent surgical treatment for segmental knee-joint periprosthetic bone loss using structural proximal tibial allografts coated with serum albumin. Successful treatment of late complications which occurred in the postoperative period is also described. The authors emphasize that bone replacement with allografts is a physiological process that enables the stable positioning of the implant and the reconstruction of the soft tissues, the replacement of extensive bone loss, and also it is a less expensive operation. It has been already confirmed that treatment of lyophilised allografts with albumin improves the ability of bone marrow-derived mesenchymal stem cells to adhere and proliferate the surface of the allografts, penetrate the pores and reach deeper layers of the graft. Earlier studies have shown osteoblast activity on the surface and interior of the graft.

Past, Present and Future of UHECR Observations

NASA Astrophysics Data System (ADS)

Dawson, B. R.; Fukushima, M.; Sokolsky, P.

2017-12-01

Great advances have been made in the study of ultra-high energy cosmic rays (UHECR) in the past two decades. These include the discovery of the spectral cut-off near 5 x 10^19 eV and complex structure at lower energies, as well as increasingly precise information about the composition of cosmic rays as a function of energy. Important improvements in techniques, including extensive surface detector arrays and high resolution air fluorescence detectors, have been instrumental in facilitating this progress. We discuss the status of the field, including the open questions about the nature of spectral structure, systematic issues related to our understanding of composition, and emerging evidence for anisotropy at the highest energies. We review prospects for upgraded and future observatories including Telescope Array, Pierre Auger and JEM-EUSO and other space-based proposals, and discuss promising new technologies based on radio emission from extensive air showers produced by UHECR.

Core competency requirements among extension workers in peninsular Malaysia: Use of Borich's needs assessment model.

PubMed

Umar, Sulaiman; Man, Norsida; Nawi, Nolila Mohd; Latif, Ismail Abd; Samah, Bahaman Abu

2017-06-01

The study described the perceived importance of, and proficiency in core agricultural extension competencies among extension workers in Peninsular Malaysia; and evaluating the resultant deficits in the competencies. The Borich's Needs Assessment Model was used to achieve the objectives of the study. A sample of 298 respondents was randomly selected and interviewed using a pre-tested structured questionnaire. Thirty-three core competency items were assessed. Instrument validity and reliability were ensured. The cross-sectional data obtained was analysed using SPSS for descriptive statistics including mean weighted discrepancy score (MWDS). Results of the study showed that on a scale of 5, the most important core extension competency items according to respondents' perception were: "Making good use of information and communication technologies/access and use of web-based resources" (M=4.86, SD=0.23); "Conducting needs assessments" (M=4.84, SD=0.16); "organizing extension campaigns" (M=4.82, SD=0.47) and "Managing groups and teamwork" (M=4.81, SD=0.76). In terms of proficiency, the highest competency identified by the respondents was "Conducting farm and home visits (M=3.62, SD=0.82) followed by 'conducting meetings effectively' (M=3.19, SD=0.72); "Conducting focus group discussions" (M=3.16, SD=0.32) and "conducting community forums" (M=3.13, SD=0.64). The discrepancies implying competency deficits were widest in "Acquiring and allocating resources" (MWDS=12.67); use of information and communication technologies (ICTs) and web-based resources in agricultural extension (MWDS=12.59); and report writing and sharing the results and impacts (MWDS=11.92). It is recommended that any intervention aimed at developing the capacity of extension workers in Peninsular Malaysia should prioritize these core competency items in accordance with the deficits established in this study. Copyright © 2017 Elsevier Ltd. All rights reserved.

Specifying structural constraints of architectural patterns in the ARCHERY language

DOE Office of Scientific and Technical Information (OSTI.GOV)

Sanchez, Alejandro; HASLab INESC TEC and Universidade do Minho, Campus de Gualtar, 4710-057 Braga; Barbosa, Luis S.

ARCHERY is an architectural description language for modelling and reasoning about distributed, heterogeneous and dynamically reconfigurable systems in terms of architectural patterns. The language supports the specification of architectures and their reconfiguration. This paper introduces a language extension for precisely describing the structural design decisions that pattern instances must respect in their (re)configurations. The extension is a propositional modal logic with recursion and nominals referencing components, i.e., a hybrid µ-calculus. Its expressiveness allows specifying safety and liveness constraints, as well as paths and cycles over structures. Refinements of classic architectural patterns are specified.

Spider web-inspired acoustic metamaterials

NASA Astrophysics Data System (ADS)

Miniaci, Marco; Krushynska, Anastasiia; Movchan, Alexander B.; Bosia, Federico; Pugno, Nicola M.

2016-08-01

Spider silk is a remarkable example of bio-material with superior mechanical characteristics. Its multilevel structural organization of dragline and viscid silk leads to unusual and tunable properties, extensively studied from a quasi-static point of view. In this study, inspired by the Nephila spider orb web architecture, we propose a design for mechanical metamaterials based on its periodic repetition. We demonstrate that spider-web metamaterial structure plays an important role in the dynamic response and wave attenuation mechanisms. The capability of the resulting structure to inhibit elastic wave propagation in sub-wavelength frequency ranges is assessed, and parametric studies are performed to derive optimal configurations and constituent mechanical properties. The results show promise for the design of innovative lightweight structures for tunable vibration damping and impact protection, or the protection of large scale infrastructure such as suspended bridges.

Goethite surface reactivity: a macroscopic investigation unifying proton, chromate, carbonate, and lead(II) adsorption.

PubMed

Villalobos, Mario; Pérez-Gallegos, Ayax

2008-10-15

The goethite surface structure has been extensively studied, but no convincing quantitative description of its highly variable surface reactivity as inversely related to its specific surface area (SSA) has been found. The present study adds experimental evidence and provides a unified macroscopic explanation to this anomalous behavior from differences in average adsorption capacities, and not in average adsorption affinities. We investigated the chromate anion and lead(II) cation adsorption behavior onto three different goethites with SSA varying from 50 to 94 m(2)/g, and analyzed an extensive set of published anion adsorption and proton charging data for variable SSA goethites. Maximum chromate adsorption was found to occupy on average from 3.1 to 9.7 sites/nm(2), inversely related to SSA. Congruency of oxyanion and Pb(II) adsorption behavior based on fractional site occupancy using these values, and a site density analysis suggest that: (i) ion binding occurs to singly and doubly coordinated sites, (ii) proton binding occurs to singly and triply coordinated sites (ranging from 6.2 to 8 total sites/nm(2), in most cases), and (iii) a predominance of (210) and/or (010) faces explains the high reactivity of low SSA goethites. The results imply that the macroscopic goethite adsorption behavior may be predicted without a need to investigate extensive structural details of each specific goethite of interest.

Factors influencing smallholder farmers' behavioural intention towards adaptation to climate change in transitional climatic zones: A case study of Hwedza District in Zimbabwe.

PubMed

Zamasiya, Byron; Nyikahadzoi, Kefasi; Mukamuri, Billy Billiard

2017-08-01

This paper examines factors influencing behavioural change among smallholder farmers towards adaptation to climate change in transitional climatic zones of Africa, specifically, Hwedza District in Zimbabwe. Data for this study were collected from 400 randomly-selected smallholder farmers, using a structured questionnaire, focus group discussions and key informant interviews. The study used an ordered logit model to examine the factors that influence smallholder farmers' behavioural intention towards adaptation to climate change. Results from the study show that the gender of the household head, access to extension services on crop and livestock production, access to climate information, membership to social groups and experiencing a drought have a positive influence on farmers' attitude towards adaptation to climate change and variability. The study concluded that although the majority of smallholder farmers perceive that the climate is changing, they continue to habour negative attitudes towards prescribed climate change adaptation techniques. This study recommends more education on climate change, as well as adaptation strategies for both agricultural extension workers and farmers. This can be complemented by disseminating timely climate information through extension officers and farmers' groups. Copyright © 2017 Elsevier Ltd. All rights reserved.

Seismic vulnerability assessment to earthquake at urban scale: A case of Mostaganem city in Algeria

PubMed Central

Benanane, Abdelkader; Boutaraa, Zohra

2018-01-01

The focus of this study was the seismic vulnerability assessment of buildings constituting Mostaganem city in Algeria. Situated 320 km to the west of Algiers, Mostaganem city encompasses a valuable cultural and architectural built heritage. The city has suffered several moderate earthquakes in recent years; this has led to extensive structural damage to old structures, especially unreinforced historical buildings. This study was divided into two essential steps, the first step being to establish fragility curves based on a non-linear static pushover analysis for each typology and height of buildings. Twenty-seven pushover analyses were performed by means of SAP2000 software (three analyses for each type of building). The second step was to adopt the US HAZUS software and to modify it to suit the typical setting and parameters of the city of Mostaganem. A seismic vulnerability analysis of Mostaganem city was conducted using HAZUS software after inputting the new parameters of the fragility curves established within the first step. The results indicated that the number of poor-quality buildings expected to be totally destroyed under a 5.5 Mw earthquake scenario could reach more than 28 buildings. Three percent of unreinforced masonry (URM) buildings were completely damaged and 10% were extensively damaged. Of the concrete frame buildings, 6% were extensively damaged and 19% were moderately damaged. According to the built year, 6% of both concrete frame and URM buildings built before 1980 are estimated to be collapsing. Buildings constructed between 1980 and 1999 are more resistant; 8% of those structures were extensively damaged and 18% were moderately damaged. Only 10% of buildings constructed after 1999 were moderately damaged. The results also show that the main hospital of the city, built before 1960, will be extensively damaged during an earthquake of 5.5 Mw. The number of human casualties could reach several hundreds – 10.5% of residents of URM buildings are injured or dead. Compared with the URM buildings, concrete frame buildings have lower casualty rates of 1.5% and 0.5% for those built before and after 1980, respectively. It was concluded that Mostaganem city belongs to seismic vulnerable zones in Algeria; in this regard, an action plan is needed for the rehabilitation of old constructions. In addition, the effectiveness of establishing and introducing new and appropriate fragility curves was demonstrated.

Crustal extension and magmatism during the mid-Cenozoic ignimbrite flare-up in the Guazapares Mining District and Cerocahui basin regions, northern Sierra Madre Occidental, western Chihuahua, Mexico

NASA Astrophysics Data System (ADS)

Murray, Bryan Patrick

Silicic large igneous provinces are significant in the geologic record, due to their unusually extensive areal coverage (>100,000 km2) and large volumes (>250,000 km3), and may be characteristic of continental regions undergoing broad lithospheric extension. The Sierra Madre Occidental of northwestern Mexico is the biggest and best-preserved silicic large igneous province of the Cenozoic and is considered part of the extensive mid-Cenozoic ignimbrite flare-up that affected much of the southwestern North American Cordillera. Despite its size and preservation, very little is known about the geology of the Sierra Madre Occidental, and the timing and spatial extent of ignimbrite flare-up volcanism in relation to crustal extension is relatively unknown. This study presents new geologic mapping, stratigraphy, zircon U-Pb laser ablation ICP-MS dating, modal analysis, and geochemical data from the Guazapares Mining District and Cerocahui basin regions, two adjacent areas of the northern Sierra Madre Occidental in western Chihuahua. The rock exposure and topographic relief in this previously unmapped ~450 km2 area make it ideal for studying the relationships between silicic large igneous province volcanism and crustal extension. Three informal formations are identified in the study area: (1) the ca. 27.5 Ma Parajes formation, a ~1-km-thick succession of primarily welded silicic outflow ignimbrite sheets erupted from sources within ~50--100 km of the study area that were active during the Early Oligocene pulse of the mid-Cenozoic ignimbrite flare-up; (2) the ca. 27--24.5 Ma Temoris formation, composed primarily of locally erupted mafic-intermediate lavas and associated intrusions with interbedded alluvial deposits, likely related to rocks of the Southern Cordillera basaltic andesite province that were intermittently erupted across all of the northern Sierra Madre Occidental following the Early Oligocene ignimbrite pulse; and (3) the ca. 24.5--23 Ma Sierra Guazapares formation, composed of silicic vent to proximal facies ignimbrites, lavas, plugs, and reworked equivalents that record the initiation of explosive and effusive silicic fissure magmatism in the study area during the Early Miocene pulse of the mid-Cenozoic ignimbrite flare-up. The Guazapares Mining District and Cerocahui basin regions share this stratigraphy, but the rocks in the Cerocahui basin consist of a much higher proportion of alluvial deposits. The main geologic structures in the Guazapares Mining District and Cerocahui basin regions are NNW-trending normal faults, with an estimated minimum of 20% total horizontal extension. Many normal faults bound half-graben basins that show evidence of syndepositional extension. Normal faulting began by ca. 27.5 Ma during deposition of the youngest ignimbrites of the Parajes formation, concurrent with the end of the Early Oligocene silicic ignimbrite pulse of the ignimbrite flare-up to the east and before magmatism began in the study area. Preexisting normal faults localized mafic-intermediate volcanic vents of the Temoris formation and silicic vents of the Sierra Guazapares formation, and were active during deposition of these formations. In addition, the localization and timing of epithermal mineralization in the Guazapares Mining District appears to be favored where pre-to-synvolcanic extensional structures are in close association with Sierra Guazapares formation rhyolite plugs. The timing of extensional faulting and magmatism in the Guazapares Mining District and Cerocahui regions is consistent with regional-scale Middle Eocene to Early Miocene southwestward migration of active volcanism and extension in the northern Sierra Madre Occidental. Extension accompanied mafic-intermediate and silicic volcanism in the study area, and overlapped with the peak of mid-Cenozoic ignimbrite flare-up in the Sierra Madre Occidental; this supports the interpretation that there is likely a relationship between lithospheric extension and silicic large igneous province magmatism.

METCAN: The metal matrix composite analyzer

NASA Technical Reports Server (NTRS)

Hopkins, Dale A.; Murthy, Pappu L. N.

1988-01-01

Metal matrix composites (MMC) are the subject of intensive study and are receiving serious consideration for critical structural applications in advanced aerospace systems. MMC structural analysis and design methodologies are studied. Predicting the mechanical and thermal behavior and the structural response of components fabricated from MMC requires the use of a variety of mathematical models. These models relate stresses to applied forces, stress intensities at the tips of cracks to nominal stresses, buckling resistance to applied force, or vibration response to excitation forces. The extensive research in computational mechanics methods for predicting the nonlinear behavior of MMC are described. This research has culminated in the development of the METCAN (METal Matrix Composite ANalyzer) computer code.

DOE Office of Scientific and Technical Information (OSTI.GOV)

Jones, K.M.; Al-Jassim, M.M.; Williamson, D.L.

Over the last two decades extensive studies on the optical and electrical properties of hydrogenated amorphous Si (a-Si:H) have been reported. However, less attention was given to the structural characterization of this material partly due to the insensitivity to hydrogen of structural probes such as x-rays and electron diffraction. From a recent set of experiments, results on the solubility limit of hydrogen in a special type of a-Si:H and the characterization of hydrogen induced complexes or nanobubbles has been reported. In this study, we report TEM observations of the structural morphology of hydrogen related defects that support these recent measurementsmore » obtained by secondary ion mass spectrometry (SIMS) and small-angle x-ray scattering (SAXS).« less

Mass media influence spreading in social networks with community structure

NASA Astrophysics Data System (ADS)

Candia, Julián; Mazzitello, Karina I.

2008-07-01

We study an extension of Axelrod's model for social influence, in which cultural drift is represented as random perturbations, while mass media are introduced by means of an external field. In this scenario, we investigate how the modular structure of social networks affects the propagation of mass media messages across a society. The community structure of social networks is represented by coupled random networks, in which two random graphs are connected by intercommunity links. Considering inhomogeneous mass media fields, we study the conditions for successful message spreading and find a novel phase diagram in the multidimensional parameter space. These findings show that social modularity effects are of paramount importance for designing successful, cost-effective advertising campaigns.

Structural basis for diversity in the SAM clan of riboswitches.

PubMed

Trausch, Jeremiah J; Xu, Zhenjiang; Edwards, Andrea L; Reyes, Francis E; Ross, Phillip E; Knight, Rob; Batey, Robert T

2014-05-06

In bacteria, sulfur metabolism is regulated in part by seven known families of riboswitches that bind S-adenosyl-l-methionine (SAM). Direct binding of SAM to these mRNA regulatory elements governs a downstream secondary structural switch that communicates with the transcriptional and/or translational expression machinery. The most widely distributed SAM-binding riboswitches belong to the SAM clan, comprising three families that share a common SAM-binding core but differ radically in their peripheral architecture. Although the structure of the SAM-I member of this clan has been extensively studied, how the alternative peripheral architecture of the other families supports the common SAM-binding core remains unknown. We have therefore solved the X-ray structure of a member of the SAM-I/IV family containing the alternative "PK-2" subdomain shared with the SAM-IV family. This structure reveals that this subdomain forms extensive interactions with the helix housing the SAM-binding pocket, including a highly unusual mode of helix packing in which two helices pack in a perpendicular fashion. Biochemical and genetic analysis of this RNA reveals that SAM binding induces many of these interactions, including stabilization of a pseudoknot that is part of the regulatory switch. Despite strong structural similarity between the cores of SAM-I and SAM-I/IV members, a phylogenetic analysis of sequences does not indicate that they derive from a common ancestor.

Revised Atomistic Models of the Crystal Structure of C-S-H with high C/S Ratio

NASA Astrophysics Data System (ADS)

Kovačević, Goran; Nicoleau, Luc; Nonat, André; Veryazov, Valera

2016-09-01

The atomic structure of calcium-silicate-hydrate (C1.67-S-Hx) has been studied. Atomistic C-S-H models suggested in our previous study have been revised in order to perform a direct comparison of energetic stability of the different structures. An extensive set of periodic structures of C-S-H with variation of water content was created, and then optimized using molecular dynamics with reactive force field ReaxFF and quantum chemical semiempirical method PM6. All models show organization of water molecules inside the structure of C-S-H. The new geometries of C-S-H, reported in this paper, show lower relative energy with respect to the geometries from the original definition of C-S-H models. Model that corresponds to calcium enriched tobermorite structure has the lowest relative energy and the density closest to the experimental values.

The Optimal Distribution of Practice for the Acquisition of L2 Morphology: A Conceptual Replication and Extension

ERIC Educational Resources Information Center

Suzuki, Yuichi

2017-01-01

This study examined optimal learning schedules for second language (L2) acquisition of a morphological structure. Sixty participants studied the simple and complex morphological rules of a novel miniature language system so as to use them for oral production. They engaged in four training sessions in either shorter spaced (3.3-day interval) or…

From Hierarchy to Pluralism in American High Schools: Changing Patterns in Status Distinctions and Racial Segregation.

ERIC Educational Resources Information Center

Comas, Jordi, R.; Milner, Murray, Jr.

Previous research on high school status consistently found a status structure characterized by extensive ranking and group salience. This case study, using observations and interviews, documents the emergence of a new pattern: status pluralism. The study was conducted in a medium-sized urban high school of about 1,000 students, who were nearly…

Convenience and Community? An Exploratory Investigation into Learners' Experiences of Web Conferencing

ERIC Educational Resources Information Center

Cornelius, Sarah

2013-01-01

This paper presents the findings of an exploratory study into the experiences of a small group of learners who have made extensive use of web conferencing as part of their studies over the academic year 2009/10. The paper outlines the design of the programme and structure of web conferencing workshops. It draws on findings from a post-programme…

Analysis

NASA Astrophysics Data System (ADS)

Abdelazeem, Maha; El-Sawy, El-Sawy K.; Gobashy, Mohamed M.

2013-06-01

Ar Rika fault zone constitutes one of the two major parts of the NW-SE Najd fault system (NFS), which is one of the most prominent structural features located in the east of the center of the Arabian Shield, Saudi Arabia. By using Enhancement Thematic Mapper data (ETM+) and Principle Component Analysis (PCA), surface geological characteristics, distribution of rock types, and the different trends of linear features and faults are determined in the study area. First and second order magnetic gradients of the geomagnetic field at the North East of Wadi Ar Rika have been calculated in the frequency domain to map both surface and subsurface lineaments and faults. Lineaments as deduced from previous studies, suggest an extension of the NFS beneath the cover rocks in the study area. In the present study, integration of magnetic gradients and remote sensing analysis that resulted in different valuable derivative maps confirm the subsurface extension of some of the surface features. The 3D Euler deconvolution, the total gradient, and the tilt angle maps have been utilized to determine accurately the distribution of shear zones, the tectonic implications, and the internal structures of the terranes in the Ar Rika quadrangle in three dimensions.

Structural assurance testing for post-shipping satellite inspection

NASA Astrophysics Data System (ADS)

Reynolds, Whitney D.; Doyle, Derek; Arritt, Brandon

2012-04-01

Current satellite transportation sensors can provide a binary indication of the acceleration or shock that a satellite has experienced during the shipping process but do little to identify if significant structural change has occurred in the satellite and where it may be located. When a sensor indicates that the satellite has experienced shock during transit, an extensive testing process begins to evaluate the satellite functionality. If errors occur during the functional checkout, extensive physical inspection of the structure follows. In this work an alternate method for inspecting satellites for structural defects after shipping is presented. Electro- Mechanical Impedance measurements are used as an indication of the structural state. In partnership with the Air Force Research Laboratory University Nanosatellite Program, Cornell's CUSat mass model was instrumented with piezoelectric transducers and tested under several structural damage scenarios. A method for detecting and locating changes in the structure using EMI data is presented.

Analytic calculation of radio emission from parametrized extensive air showers: A tool to extract shower parameters

NASA Astrophysics Data System (ADS)

Scholten, O.; Trinh, T. N. G.; de Vries, K. D.; Hare, B. M.

2018-01-01

The radio intensity and polarization footprint of a cosmic-ray induced extensive air shower is determined by the time-dependent structure of the current distribution residing in the plasma cloud at the shower front. In turn, the time dependence of the integrated charge-current distribution in the plasma cloud, the longitudinal shower structure, is determined by interesting physics which one would like to extract, such as the location and multiplicity of the primary cosmic-ray collision or the values of electric fields in the atmosphere during thunderstorms. To extract the structure of a shower from its footprint requires solving a complicated inverse problem. For this purpose we have developed a code that semianalytically calculates the radio footprint of an extensive air shower given an arbitrary longitudinal structure. This code can be used in an optimization procedure to extract the optimal longitudinal shower structure given a radio footprint. On the basis of air-shower universality we propose a simple parametrization of the structure of the plasma cloud. This parametrization is based on the results of Monte Carlo shower simulations. Deriving the parametrization also teaches which aspects of the plasma cloud are important for understanding the features seen in the radio-emission footprint. The calculated radio footprints are compared with microscopic CoREAS simulations.

Single-molecule study of the DNA denaturation phase transition in the force-torsion space.

PubMed

Salerno, D; Tempestini, A; Mai, I; Brogioli, D; Ziano, R; Cassina, V; Mantegazza, F

2012-09-14

We use the "magnetic tweezers" technique to show the structural transitions that the DNA undergoes in the force-torsion space. In particular, we focus on the regions corresponding to negative supercoiling. These regions are characterized by the formation of the so-called denaturation bubbles, which play an essential role in the replication and transcription of DNA. We experimentally map the region of the force-torsion space where the denaturation takes place. We observe that large fluctuations in DNA extension occur at one of the boundaries of this region, i.e., when the formation of denaturation bubbles and of plectonemes compete. To describe the experiments, we introduce a suitable extension of the classical model. The model correctly describes the position of the denaturation regions, the transition boundaries, and the measured values of the DNA extension fluctuations.

System crash as dynamics of complex networks.

PubMed

Yu, Yi; Xiao, Gaoxi; Zhou, Jie; Wang, Yubo; Wang, Zhen; Kurths, Jürgen; Schellnhuber, Hans Joachim

2016-10-18

Complex systems, from animal herds to human nations, sometimes crash drastically. Although the growth and evolution of systems have been extensively studied, our understanding of how systems crash is still limited. It remains rather puzzling why some systems, appearing to be doomed to fail, manage to survive for a long time whereas some other systems, which seem to be too big or too strong to fail, crash rapidly. In this contribution, we propose a network-based system dynamics model, where individual actions based on the local information accessible in their respective system structures may lead to the "peculiar" dynamics of system crash mentioned above. Extensive simulations are carried out on synthetic and real-life networks, which further reveal the interesting system evolution leading to the final crash. Applications and possible extensions of the proposed model are discussed.

Single-Molecule Study of the DNA Denaturation Phase Transition in the Force-Torsion Space

NASA Astrophysics Data System (ADS)

Salerno, D.; Tempestini, A.; Mai, I.; Brogioli, D.; Ziano, R.; Cassina, V.; Mantegazza, F.

2012-09-01

We use the “magnetic tweezers” technique to show the structural transitions that the DNA undergoes in the force-torsion space. In particular, we focus on the regions corresponding to negative supercoiling. These regions are characterized by the formation of the so-called denaturation bubbles, which play an essential role in the replication and transcription of DNA. We experimentally map the region of the force-torsion space where the denaturation takes place. We observe that large fluctuations in DNA extension occur at one of the boundaries of this region, i.e., when the formation of denaturation bubbles and of plectonemes compete. To describe the experiments, we introduce a suitable extension of the classical model. The model correctly describes the position of the denaturation regions, the transition boundaries, and the measured values of the DNA extension fluctuations.

26 CFR 157.6081-1 - Automatic extension of time for filing a return due under chapter 55.

Code of Federal Regulations, 2010 CFR

2010-04-01

... SETTLEMENT FACTORING TRANSACTIONS Procedure and Administration § 157.6081-1 Automatic extension of time for..., “Excise Tax on Structured Settlement Factoring Transactions”, will be allowed an automatic 6-month...

Surface profile control of FeNiPt/Pt core/shell nanowires for oxygen reduction reaction

DOE PAGES

Zhu, Huiyuan; Zhang, Sen; Su, Dong; ...

2015-03-18

The ever-increasing energy demand requires renewable energy schemes with low environmental impacts. Electrochemical energy conversion devices, such as fuel cells, combine fuel oxidization and oxygen reduction reactions and have been studied extensively for renewable energy applications. However, their energy conversion efficiency is often limited by kinetically sluggish chemical conversion reactions, especially oxygen reduction reaction (ORR). [1-5] To date, extensive efforts have been put into developing efficient ORR catalysts with controls on catalyst sizes, compositions, shapes and structures. [6-12] Recently, Pt-based catalysts with core/shell and one-dimensional nanowire (NW) morphologies were found to be promising to further enhance ORR catalysis.more » With the core/shell structure, the ORR catalysis of a nanoparticle (NP) catalyst can be tuned by both electronic and geometric effects at the core/shell interface. [10,13,14] With the NW structure, the catalyst interaction with the conductive support can be enhanced to facilitate electron transfer between the support and the NW catalyst and to promote ORR. [11,15,16]« less

RipleyGUI: software for analyzing spatial patterns in 3D cell distributions

PubMed Central

Hansson, Kristin; Jafari-Mamaghani, Mehrdad; Krieger, Patrik

2013-01-01

The true revolution in the age of digital neuroanatomy is the ability to extensively quantify anatomical structures and thus investigate structure-function relationships in great detail. To facilitate the quantification of neuronal cell patterns we have developed RipleyGUI, a MATLAB-based software that can be used to detect patterns in the 3D distribution of cells. RipleyGUI uses Ripley's K-function to analyze spatial distributions. In addition the software contains statistical tools to determine quantitative statistical differences, and tools for spatial transformations that are useful for analyzing non-stationary point patterns. The software has a graphical user interface making it easy to use without programming experience, and an extensive user manual explaining the basic concepts underlying the different statistical tools used to analyze spatial point patterns. The described analysis tool can be used for determining the spatial organization of neurons that is important for a detailed study of structure-function relationships. For example, neocortex that can be subdivided into six layers based on cell density and cell types can also be analyzed in terms of organizational principles distinguishing the layers. PMID:23658544

How the 2SLS/IV estimator can handle equality constraints in structural equation models: a system-of-equations approach.

PubMed

Nestler, Steffen

2014-05-01

Parameters in structural equation models are typically estimated using the maximum likelihood (ML) approach. Bollen (1996) proposed an alternative non-iterative, equation-by-equation estimator that uses instrumental variables. Although this two-stage least squares/instrumental variables (2SLS/IV) estimator has good statistical properties, one problem with its application is that parameter equality constraints cannot be imposed. This paper presents a mathematical solution to this problem that is based on an extension of the 2SLS/IV approach to a system of equations. We present an example in which our approach was used to examine strong longitudinal measurement invariance. We also investigated the new approach in a simulation study that compared it with ML in the examination of the equality of two latent regression coefficients and strong measurement invariance. Overall, the results show that the suggested approach is a useful extension of the original 2SLS/IV estimator and allows for the effective handling of equality constraints in structural equation models. © 2013 The British Psychological Society.

Structurally Integrated, Damage-Tolerant, Thermal Spray Coatings

NASA Astrophysics Data System (ADS)

Vackel, Andrew; Dwivedi, Gopal; Sampath, Sanjay

2015-07-01

Thermal spray coatings are used extensively for the protection and life extension of engineering components exposed to harsh wear and/or corrosion during service in aerospace, energy, and heavy machinery sectors. Cermet coatings applied via high-velocity thermal spray are used in aggressive wear situations almost always coupled with corrosive environments. In several instances (e.g., landing gear), coatings are considered as part of the structure requiring system-level considerations. Despite their widespread use, the technology has lacked generalized scientific principles for robust coating design, manufacturing, and performance analysis. Advances in process and in situ diagnostics have provided significant insights into the process-structure-property-performance correlations providing a framework-enhanced design. In this overview, critical aspects of materials, process, parametrics, and performance are discussed through exemplary studies on relevant compositions. The underlying connective theme is understanding and controlling residual stresses generation, which not only addresses process dynamics but also provides linkage for process-property relationship for both the system (e.g., fatigue) and the surface (wear and corrosion). The anisotropic microstructure also invokes the need for damage-tolerant material design to meet future goals.

Apparatus, system, and method for providing fabric-elastomer composites as pneumatic actuators

DOEpatents

Martinez, Ramses V.; Whitesides, George M.

2017-10-25

Soft pneumatic actuators based on composites consisting of elastomers with embedded sheet or fiber structures (e.g., paper or fabric) that are flexible but not extensible are described. On pneumatic inflation, these actuators move anisotropically, based on the motions accessible by their composite structures. They are inexpensive, simple to fabricate, light in weight, and easy to actuate. This class of structure is versatile: the same principles of design lead to actuators that respond to pressurization with a wide range of motions (bending, extension, contraction, twisting, and others). Paper, when used to introduce anisotropy into elastomers, can be readily folded into three-dimensional structures following the principles of origami; these folded structures increase the stiffness and anisotropy of the elastomeric actuators, while keeping them light in weight.

Employing 2D Forward Modeling of Gravity and Magnetic Data to Further Constrain the Magnitude of Extension Recorded by the Caetano Caldera, Nevada

NASA Astrophysics Data System (ADS)

Ritzinger, B. T.; Glen, J. M. G.; Athens, N. D.; Denton, K. M.; Bouligand, C.

2015-12-01

Regionally continuous Cenozoic rocks in the Basin and Range that predate the onset of major mid-Miocene extension provide valuable insight into the sequence of faulting and magnitude of extension. An exceptional example of this is Caetano caldera, located in north-central Nevada, that formed during the eruption of the Caetano Tuff at the Eocene-Oligocene transition. The caldera and associated deposits, as well as conformable caldera-filling sedimentary and volcanic units allow for the reconstruction of post Oligocene extensional faulting. Extensive mapping and geochronologic, geochemical and paleomagnetic analyses have been conducted over the last decade to help further constrain the eruptive and extensional history of the Caetano caldera and associated deposits. Gravity and magnetic data, that highlight contrasts in density and magnetic properties (susceptibility and remanence), respectively, are useful for mapping and modeling structural and lithic discontinuities. By combining existing gravity and aeromagnetic data with newly collected high-resolution gravity data, we are performing detailed potential field modeling to better characterize the subsurface within and surrounding the caldera. Modeling is constrained by published geologic map and cross sections and by new rock properties for these units determined from oriented drill core and hand samples collected from outcrops that span all of the major rock units in the study area. These models will enable us to better map the margins of the caldera and more accurately determine subsurface lithic boundaries and complex fault geometries, as well as aid in refining estimates of the magnitude of extension across the caldera. This work highlights the value in combining geologic and geophysical data to build an integrated structural model to help characterize the subsurface and better constrain the extensional tectonic history if this part of the Great Basin.

An expert system for integrated structural analysis and design optimization for aerospace structures

NASA Technical Reports Server (NTRS)

1992-01-01

The results of a research study on the development of an expert system for integrated structural analysis and design optimization is presented. An Object Representation Language (ORL) was developed first in conjunction with a rule-based system. This ORL/AI shell was then used to develop expert systems to provide assistance with a variety of structural analysis and design optimization tasks, in conjunction with procedural modules for finite element structural analysis and design optimization. The main goal of the research study was to provide expertise, judgment, and reasoning capabilities in the aerospace structural design process. This will allow engineers performing structural analysis and design, even without extensive experience in the field, to develop error-free, efficient and reliable structural designs very rapidly and cost-effectively. This would not only improve the productivity of design engineers and analysts, but also significantly reduce time to completion of structural design. An extensive literature survey in the field of structural analysis, design optimization, artificial intelligence, and database management systems and their application to the structural design process was first performed. A feasibility study was then performed, and the architecture and the conceptual design for the integrated 'intelligent' structural analysis and design optimization software was then developed. An Object Representation Language (ORL), in conjunction with a rule-based system, was then developed using C++. Such an approach would improve the expressiveness for knowledge representation (especially for structural analysis and design applications), provide ability to build very large and practical expert systems, and provide an efficient way for storing knowledge. Functional specifications for the expert systems were then developed. The ORL/AI shell was then used to develop a variety of modules of expert systems for a variety of modeling, finite element analysis, and design optimization tasks in the integrated aerospace structural design process. These expert systems were developed to work in conjunction with procedural finite element structural analysis and design optimization modules (developed in-house at SAT, Inc.). The complete software, AutoDesign, so developed, can be used for integrated 'intelligent' structural analysis and design optimization. The software was beta-tested at a variety of companies, used by a range of engineers with different levels of background and expertise. Based on the feedback obtained by such users, conclusions were developed and are provided.

An expert system for integrated structural analysis and design optimization for aerospace structures

NASA Astrophysics Data System (ADS)

1992-04-01

The results of a research study on the development of an expert system for integrated structural analysis and design optimization is presented. An Object Representation Language (ORL) was developed first in conjunction with a rule-based system. This ORL/AI shell was then used to develop expert systems to provide assistance with a variety of structural analysis and design optimization tasks, in conjunction with procedural modules for finite element structural analysis and design optimization. The main goal of the research study was to provide expertise, judgment, and reasoning capabilities in the aerospace structural design process. This will allow engineers performing structural analysis and design, even without extensive experience in the field, to develop error-free, efficient and reliable structural designs very rapidly and cost-effectively. This would not only improve the productivity of design engineers and analysts, but also significantly reduce time to completion of structural design. An extensive literature survey in the field of structural analysis, design optimization, artificial intelligence, and database management systems and their application to the structural design process was first performed. A feasibility study was then performed, and the architecture and the conceptual design for the integrated 'intelligent' structural analysis and design optimization software was then developed. An Object Representation Language (ORL), in conjunction with a rule-based system, was then developed using C++. Such an approach would improve the expressiveness for knowledge representation (especially for structural analysis and design applications), provide ability to build very large and practical expert systems, and provide an efficient way for storing knowledge. Functional specifications for the expert systems were then developed. The ORL/AI shell was then used to develop a variety of modules of expert systems for a variety of modeling, finite element analysis, and design optimization tasks in the integrated aerospace structural design process. These expert systems were developed to work in conjunction with procedural finite element structural analysis and design optimization modules (developed in-house at SAT, Inc.). The complete software, AutoDesign, so developed, can be used for integrated 'intelligent' structural analysis and design optimization. The software was beta-tested at a variety of companies, used by a range of engineers with different levels of background and expertise. Based on the feedback obtained by such users, conclusions were developed and are provided.

The effect of liquid hot water pretreatment on the chemical–structural alteration and the reduced recalcitrance in poplar

DOE Office of Scientific and Technical Information (OSTI.GOV)

Li, Mi; Cao, Shilin; Meng, Xianzhi

Hydrothermal pretreatment using liquid hot water (LHW) is capable of substantially reducing the cell wall recalcitrance of lignocellulosic biomass. It enhances the saccharification of polysaccharides, particularly cellulose, into glucose with relatively low capital required. Due to the close association with biomass recalcitrance, the structural change of the components of lignocellulosic materials during the pretreatment is crucial to understand pretreatment chemistry and advance the bio-economy. Although the LHW pretreatment has been extensively applied and studied, the molecular structural alteration during pretreatment and its significance to reduced recalcitrance have not been well understood.

The effect of liquid hot water pretreatment on the chemical–structural alteration and the reduced recalcitrance in poplar

DOE PAGES

Li, Mi; Cao, Shilin; Meng, Xianzhi; ...

2017-11-30

Hydrothermal pretreatment using liquid hot water (LHW) is capable of substantially reducing the cell wall recalcitrance of lignocellulosic biomass. It enhances the saccharification of polysaccharides, particularly cellulose, into glucose with relatively low capital required. Due to the close association with biomass recalcitrance, the structural change of the components of lignocellulosic materials during the pretreatment is crucial to understand pretreatment chemistry and advance the bio-economy. Although the LHW pretreatment has been extensively applied and studied, the molecular structural alteration during pretreatment and its significance to reduced recalcitrance have not been well understood.

DOE Office of Scientific and Technical Information (OSTI.GOV)

Von Dreele, Robert

One of the goals in developing GSAS-II was to expand from the capabilities of the original General Structure Analysis System (GSAS) which largely encompassed just structure refinement and post refinement analysis. GSAS-II has been written almost entirely in Python loaded with graphics, GUI and mathematical packages (matplotlib, pyOpenGL, wxpython, numpy and scipy). Thus, GSAS-II has a fully developed modern GUI as well as extensive graphical display of data and results. However, the structure and operation of Python has required new approaches to many of the algorithms used in crystal structure analysis. The extensions beyond GSAS include image calibration/integration as wellmore » as peak fitting and unit cell indexing for powder data which are precursors for structure solution. Structure solution within GSAS-II begins with either Pawley or LeBail extracted structure factors from powder data or those measured in a single crystal experiment. Both charge flipping and Monte Carlo-Simulated Annealing techniques are available; the former can be applied to (3+1) incommensurate structures as well as conventional 3D structures.« less

Response modification for enhanced operation and safety of bridges.

DOT National Transportation Integrated Search

2011-08-01

This report shows that safe extension of the service life of existing bridge structures is possible through bridge : health monitoring and structural response modification. To understand bridge health monitoring and structural : response modification...

Seismic response and damage detection analyses of an instrumented steel moment-framed building

USGS Publications Warehouse

Rodgers, J.E.; Celebi, M.

2006-01-01

The seismic performance of steel moment-framed buildings has been of particular interest since brittle fractures were discovered at the beam-column connections in a number of buildings following the M 6.7 Northridge earthquake of January 17, 1994. A case study of the seismic behavior of an extensively instrumented 13-story steel moment frame building located in the greater Los Angeles area of California is described herein. Response studies using frequency domain, joint time-frequency, system identification, and simple damage detection analyses are performed using an extensive strong motion dataset dating from 1971 to the present, supported by engineering drawings and results of postearthquake inspections. These studies show that the building's response is more complex than would be expected from its highly symmetrical geometry. The response is characterized by low damping in the fundamental mode, larger accelerations in the middle and lower stories than at the roof and base, extended periods of vibration after the cessation of strong input shaking, beating in the response, elliptical particle motion, and significant torsion during strong shaking at the top of the concrete piers which extend from the basement to the second floor. The analyses conducted indicate that the response of the structure was elastic in all recorded earthquakes to date, including Northridge. Also, several simple damage detection methods employed did not indicate any structural damage or connection fractures. The combination of a large, real structure and low instrumentation density precluded the application of many recently proposed advanced damage detection methods in this case study. Overall, however, the findings of this study are consistent with the limited code-compliant postearthquake intrusive inspections conducted after the Northridge earthquake, which found no connection fractures or other structural damage. ?? ASCE.

Three-dimensional variations in the lower limb caused by the windlass mechanism

PubMed Central

Tovaruela-Carrión, Natalia; Távara-Vidalón, Priscila; Fernández-Seguín, Lourdes María

2017-01-01

Background The windlass mechanism was described as the effect caused by the extension of the first metatarsalphalangeal joint (1st MTPJ). Quantify the degrees of movement produced in the leg by means of the Bioval® sensor system, after performing two measurements in the 1st MTPJ, 45° extension and maximum extension. Methods Tests-post-test study with just one intervention group, performed in the Clinical Podiatry Area of the Faculty of Nursing, Physiotherapy and Podiatry of the University of Seville. Subjects were included as of age 20, with a value from 0° to 3° valgus, Helbing line, a value from 0° to +5° for the foot postural index, and a localisation axis for the normalised subtalar joint. Subjects with surgical operations of the first ray, fractures and surgical operations in the leg, pathologies in the first ray and rheumatic diseases were excluded. Measurement was performed with the Bioval® system by means of inserting four sensors in the bone structures involved in the windlass mechanism. Results With the 45° wedge we observed a direct correlation among the variables extension–plantar flexion 1st MTPJ and rotation of the femur. With maximal extension of the 1st MTPJ we obtained a direct relationship between the variable extension of the 1st MTPJ and the variables plantar flexion and prono-supination of the 1st metatarsal as well as with the variables tibia rotation and femur rotation. Conclusion Kinematic analysis suggested that the higher the degree of extension the more movement will be generated. This reduces the level of impact the more distal the structure with respect to the 1st MTPJ, which has an impact on the entire leg. Because of the kinematic system used wasn’t suitable, its impact wasn’t exactly quantified. PMID:29302385

Effects of molecular model, ionic strength, divalent ions, and hydrophobic interaction on human neurofilament conformation

NASA Astrophysics Data System (ADS)

Lee, Joonseong; Kim, Seonghoon; Chang, Rakwoo; Jayanthi, Lakshmi; Gebremichael, Yeshitila

2013-01-01

The present study examines the effects of the model dependence, ionic strength, divalent ions, and hydrophobic interaction on the structural organization of the human neurofilament (NF) brush, using canonical ensemble Monte Carlo (MC) simulations of a coarse-grained model with the amino-acid resolution. The model simplifies the interactions between the NF core and the sidearm or between the sidearms by the sum of excluded volume, electrostatic, and hydrophobic interactions, where both monovalent salt ions and solvents are implicitly incorporated into the electrostatic interaction potential. Several important observations are made from the MC simulations of the coarse-grained model NF systems. First, the mean-field type description of monovalent salt ions works reasonably well in the NF system. Second, the manner by which the NF sidearms are arranged on the surface of the NF backbone core has little influence on the lateral extension of NF sidearms. Third, the lateral extension of the NF sidearms is highly affected by the ionic strength of the system: at low ionic strength, NF-M is most extended but at high ionic strength, NF-H is more stretched out because of the effective screening of the electrostatic interaction. Fourth, the presence of Ca2 + ions induces the attraction between negatively charged residues, which leads to the contraction of the overall NF extension. Finally, the introduction of hydrophobic interaction does not change the general structural organization of the NF sidearms except that the overall extension is contracted.

Seismotectonics of Western Turkey: A Synthesis of Source Parameters and Rupture Histories of Recent Earthquakes

NASA Astrophysics Data System (ADS)

Taymaz, T.; Tan, O.; Yolsal, S.

2004-12-01

The Aegean region, including western Turkey and Greece, is indeed one of the most seismically active and rapidly deforming continental domains in the Earth. The wide range of deformational processes occurring in this region means that the eastern Mediterranean provides a unique opportunity to improve our understanding of the complex kinematics of continental collision, including strike-slip faulting and crustal extension, as well as associated seismicity and volcanism. The tectonic evolution of the Eastern Mediterranean region is dominated by effects of subduction along the Hellenic (Aegean) arc and of continental collision in eastern Anatolia and the Caucasus. Northward subduction of the African plate beneath western Anatolia and the Aegean region is causing crustal extension in the overlying Aegean province. The interplay between dynamic effects of the relative motions of adjoining plates thus controls large-scale crustal deformation and the associated earthquake activity in Turkey. The Aegean region has been subject to extension since Miocene time, and this extension has left a pronounced expression in the present-day topography. It is further widely accepted that the rapid extension observed in western Turkey is mainly accommodated by large active normal faults that control the geomorphology which is dominated by a series of E-W trending normal-fault-bounded horst and graben structures; the N-S extension inferred from these structures is consistent with regional earthquake focal mechanisms. The E-W trending Menderes graben, the NE-SW trending Burdur, Acigol and Baklan, and NW-SE trending Dinar and Sultandag-Aksehir basins all bounded by large faults form a system of half-graben whose orientation is evident in both the topography and the tilting of Neogene sediments adjacent to them. We have studied source mechanisms and rupture histories of ˜20 earthquakes using body-waveform modelling, and have compared the shapes and amplitudes of teleseismic long-period P-, SH-, and broadband P-waveforms recorded by GDSN stations in the distance range of 30° -90° . The final solutions were also constrained by P-wave first motion polarities of near-field stations. They all exhibit the characteristics and structural complexities associated with strike-slip and normal faulting as a result of ongoing crustal deformation. We found strike, dip, rake, centroid depth, seismic moment, and source time functions and rupture history and slip distributions.

The water dimer II: Theoretical investigations

NASA Astrophysics Data System (ADS)

Mukhopadhyay, Anamika; Xantheas, Sotiris S.; Saykally, Richard J.

2018-05-01

As the archetype of aqueous hydrogen bonding, the water dimer has been extensively studied by both theory and experiment for nearly seven decades. In this article, we present a detailed chronological review of the theoretical advances made using electronic structure methods to address the structure, hydrogen bonding and vibrational spectroscopy of the water dimer, as well as the role of its potential energy surface in the development of classical force fields to describe intermolecular interactions in clusters and the condensed phases of water.

The microlasertron: An efficient switched-power source of mm wavelength radiation

DOE Office of Scientific and Technical Information (OSTI.GOV)

Palmer, R.B.

1986-12-01

An extension of W. Willis' ''Switched Power Linac'' is studied. Pulsed laser light falls on a photocathode wire, or wires, within a simple resonant structure. The resulting pulsed electron current between the wire and the structure wall drives the resonant field, and rf energy is extracted in the mm to cm wavelength range. Various geometries are presented, including one consisting of a simple array of parallel wires over a plane conductor. Results from a one-dimensional simulation are presented.

The Water Dimer II: Theoretical Investigations

DOE Office of Scientific and Technical Information (OSTI.GOV)

Mukhopadhyay, Anamika; Xantheas, Sotiris S.; Saykally, Richard J.

As the archetype of aqueous hydrogen bonding, the water dimer has been extensively studied by both theory and experiment for nearly seven decades. Here in this article, we present a detailed chronological review of the theoretical advances made using electronic structure methods to address the structure, hydrogen bonding and vibrational spectroscopy of the water dimer, as well as the role of its potential energy surface in the development of classical force fields to describe intermolecular interaction in clusters and the condensed phases of water.

Positron studies of defected metals, metallic surfaces

NASA Astrophysics Data System (ADS)

Bansil, A.

Specific problems proposed under this project included the treatment of electronic structure and momentum density in various disordered and defected systems. Since 1987, when the new high-temperature superconductors were discovered, the project focused extensively on questions concerning the electronic structure and Fermiology of high-(Tc) superconductors, in particular, (1) momentum density and positron experiments, (2) angle-resolved photoemission intensities, and (3) effects of disorder and substitutions in the high-(Tc)'s. The specific progress made in each of these problems is summarized.

The Water Dimer II: Theoretical Investigations

DOE PAGES

Mukhopadhyay, Anamika; Xantheas, Sotiris S.; Saykally, Richard J.

2018-03-29

As the archetype of aqueous hydrogen bonding, the water dimer has been extensively studied by both theory and experiment for nearly seven decades. Here in this article, we present a detailed chronological review of the theoretical advances made using electronic structure methods to address the structure, hydrogen bonding and vibrational spectroscopy of the water dimer, as well as the role of its potential energy surface in the development of classical force fields to describe intermolecular interaction in clusters and the condensed phases of water.

General structure of democratic mass matrix of quark sector in E6 model

NASA Astrophysics Data System (ADS)

Ciftci, R.; ćiftci, A. K.

2016-03-01

An extension of the Standard Model (SM) fermion sector, which is inspired by the E6 Grand Unified Theory (GUT) model, might be a good candidate to explain a number of unanswered questions in SM. Existence of the isosinglet quarks might explain great mass difference of bottom and top quarks. Also, democracy on mass matrix elements is a natural approach in SM. In this study, we have given general structure of Democratic Mass Matrix (DMM) of quark sector in E6 model.

Emergence of a Communication System: International Sign

NASA Astrophysics Data System (ADS)

Rosenstock, Rachel

International Sign (henceforth IS) is a communication system that is used widely in the international Deaf Community. The present study is one of the first to research extensively the origin of both the IS lexicon and grammatical structures. Findings demonstrate that IS is both influenced by naturally evolved sign languages used in grown deaf communities (henceforth SLs) and relies heavily on iconic, universal structures. This paper shows that IS continues to develop from a simplistic iconic system into a conventionalized system with increasingly complex rules.

Peptoid architectures: elaboration, actuation, and application.

PubMed

Yoo, Barney; Kirshenbaum, Kent

2008-12-01

Peptoids are peptidomimetic oligomers composed of N-substituted glycine units. Their convenient synthesis enables strict control over the sequence of highly diverse monomers and is capable of generating extensive compound libraries. Recent studies are beginning to explore the relationship between peptoid sequence, structure and function. We describe new approaches to direct the conformation of the peptoid backbone, leading to secondary structures such as helices, loops, and turns. These advances are enabling the discovery of bioactive peptoids and will establish modules for the design and assembly of protein mimetics.

Exploring contrasts between fast and slow rifting

NASA Astrophysics Data System (ADS)

de Montserrat Navarro, A.; Morgan, J. P.; Hall, R.; White, L. T.

2016-12-01

Researchers are now finding that extension sometimes occurs at rates much faster than the mean rates observed in the development of passive margins. Examples of rapid and ultra-rapid extension are found in several locations in Eastern Indonesia, including northern and central Sulawesi as well as eastern- and westernmost New Guinea. Periods of extension are associated with sedimentary basin growth and phases of crustal melting and rapid uplift. This is recorded by seismic imagery of basins offshore Sulawesi and New Guinea as well as through new field studies of the onshore geology in these regions. A growing body of new geochronological and biostratigraphic data provides some control on the rates of processes, indicating that extension rates can be up to an order of magnitude faster than the rates inferred for the more commonly studied rift settings (e.g. Atlantic opening, East African Rift, Australia-Antarctica opening). We explore a suite of numerical experiments comparing the evolution of these `fast' (20-100 mm/year full rate) rifting models to rifting at slow and ultra-slow extension rates (5-20 mm/year). The experiments focus on the 2-D margin architecture and predicted melt volumes. These extension episodes occurring in Eastern Indonesia take place under different thermal conditions. Thus, we also investigate the role of the initial thermal structure in controlling the evolution of rifting. We explore to what depths hot lower crust and mantle can be exhumed by fast rifting, and infer that many of the extensional basins in SE Asia cannot be explained by simple rifting episodes of fragments of continental crust. Instead, fast extension appears to be initiated by subduction related processes that we will briefly discuss.

The flood of 2011 in the lower Chao Phraya valley, Thailand: Study of a long-duration flood through satellite images

NASA Astrophysics Data System (ADS)

Liew, Soo Chin; Gupta, Avijit; Chia, Aik Song; Ang, Wu Chye

2016-06-01

The paper illustrates application of satellite images for studying the anatomy of a long-duration, extensive, and slow flood on the Chao Phraya River in 2011 that inundated Bangkok in its lower reach. The spread of floods in the valley was mapped with MODIS, month by month, from July 2011 to February 2012. A subsampled WorldView-2 mosaic was used to observe part of the valley in detail. The flood in Bangkok was studied with four higher-resolution images from Spot 4, WorldView-2, and GeoEye-1 satellites. We suspect that the floodwaters jumped the banks of the Chao Phraya south of Chai Nat, and then travelled overland and along river channels. The overland passage made it difficult to protect settlements. We also studied sedimentation from the images of this shallow overland flow across the country, which was complicated by the presence of preexisting embankments, other anthropogenic structures, and smaller stream channels. This is a descriptive study but it highlights the nature of flooding that is likely to be repeated in this low flat valley from high rainfall. The pattern of flooding was similar to that of a previous large flood in 1996 recorded in a SPOT 2 image. These floods impact Bangkok periodically, a city of about 10 million people, which started on a levee in a low flat delta, then expanded into backswamps, and is marked with local depressions from groundwater extraction. These slow extensive floods can be mapped from satellite images and properly recorded as an early step in analysis of large floods. Mapping of such floods on ground is logistically impossible. Slow, extensive, and long-lasting floods affect lower valleys and deltas of a number of major rivers, impacting agricultural fields and large populations. These floods are especially disastrous for cities located on low deltas. We submit that basic exercises on satellite images provide valuable introductory information for understanding geomorphology of such floods, and also for structuring plans for flood amelioration. Satellite images at very high resolutions, also used in this study, provide complimentary data to mapping and ground observation. Basin environments that are inundated by large shallow extensive floods are not unusual. In future, climate change is expected to raise the frequency of floods in lower parts of a number of river valleys and deltas, so that for such an environment slow extensive floods may become common and need to be studied. In that sense this is a template for studying large slow floods, arguably more frequent in future.

Structure-Activity Relationships Based on 3D-QSAR CoMFA/CoMSIA and Design of Aryloxypropanol-Amine Agonists with Selectivity for the Human β3-Adrenergic Receptor and Anti-Obesity and Anti-Diabetic Profiles.

PubMed

Lorca, Marcos; Morales-Verdejo, Cesar; Vásquez-Velásquez, David; Andrades-Lagos, Juan; Campanini-Salinas, Javier; Soto-Delgado, Jorge; Recabarren-Gajardo, Gonzalo; Mella, Jaime

2018-05-16

The wide tissue distribution of the adrenergic β3 receptor makes it a potential target for the treatment of multiple pathologies such as diabetes, obesity, depression, overactive bladder (OAB), and cancer. Currently, there is only one drug on the market, mirabegron, approved for the treatment of OAB. In the present study, we have carried out an extensive structure-activity relationship analysis of a series of 41 aryloxypropanolamine compounds based on three-dimensional quantitative structure-activity relationship (3D-QSAR) techniques. This is the first combined comparative molecular field analysis (CoMFA) and comparative molecular similarity index analysis (CoMSIA) study in a series of selective aryloxypropanolamines displaying anti-diabetes and anti-obesity pharmacological profiles. The best CoMFA and CoMSIA models presented values of r ² ncv = 0.993 and 0.984 and values of r ² test = 0.865 and 0.918, respectively. The results obtained were subjected to extensive external validation ( q ², r ², r ² m , etc.) and a final series of compounds was designed and their biological activity was predicted (best pEC 50 = 8.561).

The Red Sea structural architecture assessment based on yield strength spatial variations and Arabian margin preexisting structures

NASA Astrophysics Data System (ADS)

Alotaibi, T.; Furlong, K. P.

2016-12-01

Rift initiation and localization might reflect spatial changes in the lithospheric yield strength. However, this does not appear to be the case in the Red Sea extensional system where fission track analysis shows no significant changes in the geothermal gradient prior to the Red Sea rift onset. In contrast, though the whole Red Sea rift initiated 25 Ma ago, its extensional architecture changes dramatically along strike from narrow localized spreading in the south to asymmetrical diffuse extension north of 21° latitude. This onset of diffuse extension has been recorded in the north-western Arabian margin as old as 33 Ma. Such diversity in the extensional style might reflect along strike yield strength variations as a consequence of the geological setting in the Arabian margin. The north-western Arabian basin, which is part of the Arabian margin, bounded by Qiba high from the east, the Arabian shield from the south and the west and Syrian plateau from the north. The basin accommodates part of the Red Sea diffuse extension and has a preexisting structural architecture represented in the Cenozoic failed rift that called Sarhan graben. Our goal is to analyze the current lithospheric yield strength spatial variations along the Red Sea rift and emphasize their relationship with the Arabian margin structural architecture. We hypothesize that the north-western Arabian margin's lithospheric weakness and structural diversity are playing an important role in producing region of diffuse extension by their interaction with the forces applied by far field stresses represented by the New Tethys slab pull. On the other hand, the south-western Arabian margin interacts with the far field stresses as a single strong block in which led to localize the extension in the southern Red Sea. Our work may improve the scientific community understanding for how rifts initiate and evolve over time.

Understanding Extension in the Southern Marianas and the Challenger Deep: a 21ST Century Geoscientific Challenge

NASA Astrophysics Data System (ADS)

Stern, R. J.; Ribeiro, J. M.; Martinez, F.; Ohara, Y.

2017-12-01

The Challenger Deep (CD) is the deepest spot on Earth's solid surface and the reasons for its great depth are controversial. In general, trench depths (without sediments) are thought to reflect slab age; old oceanic lithosphere arrives at the trench deeper so similar downbending makes deeper trenches than young oceanic lithosphere. Slab tears and edges and short slabs also may help trenches deepen by making it easier to roll back. In the case of the CD, we are unsure of subducted oceanic lithosphere age because this lies near the juncture of Jurassic and Oligocene crusts. A slab edge to the west and a slab tear to the east may also help the Pacific plate roll back and contribute to its depth. A possible unexamined reason for CD's great depth may be strong extension of the overlying plate associated with opening of the Mariana Trough backarc basin (MT-BAB). GPS on islands indicate southward-increasing extension rates of at least 45mm/yr at the latitude of Guam (Kato et al. 2003 GRL; see Martinez et al. T037 for more info); extension rates are likely to be greater in the MT-BAB north of CD. There are few convergent margins where strong extension affects the overriding plate. Overriding plate extension may help deepen trenches by narrowing the plate coupling zone (Gvirtzman and Stern 2003 Tectonics). Asthenosphere outflow from the shrinking Philippine Sea plate could also push against the slab to depress it. The region around the CD is very deep water, presenting major challenges for future study. The combined deepwater assets and brainpower of the US, Japan, and China are needed to do this work. Both subducting and overriding plates need study. For the downgoing plate, we need IODP drilling and refraction studies to determine its age and crustal and lithospheric structure; electromagnetic sounding would also help reveal upper plate structure. We need passive OBS studies to map slab tears and edges. We need to better understand the tectonic evolution of the MT-BAB-CD region over the last few Ma. To do this, we need better sampling of seafloor basalts to determine their composition and age. Further exploration is needed to find more forearc seeps such as Shinkai Seep Field (Okumura et al. 2016, G3). Understanding the CD and surrounding region provides a natural focus for joint US-Japan-China marine geoscientific research in the 21st Century.

Re-constructing our models of cellulose and primary cell wall assembly

PubMed Central

Cosgrove, Daniel J.

2014-01-01

The cellulose microfibril has more subtlety than is commonly recognized. Details of its structure may influence how matrix polysaccharides interact with its distinctive hydrophobic and hydrophilic surfaces to form a strong yet extensible structure. Recent advances in this field include the first structures of bacterial and plant cellulose synthases and revised estimates of microfibril structure, reduced from 36 to 18 chains. New results also indicate that cellulose interactions with xyloglucan are more limited than commonly believed, whereas pectin-cellulose interactions are more prevalent. Computational results indicate that xyloglucan binds tightest to the hydrophobic surface of cellulose microfibrils. Wall extensibility may be controlled at limited regions (“biomechanical hotspots”) where cellulose-cellulose contacts are made, potentially mediated by trace amounts of xyloglucan. PMID:25460077

Re-constructing our models of cellulose and primary cell wall assembly.

PubMed

Cosgrove, Daniel J

2014-12-01

The cellulose microfibril has more subtlety than is commonly recognized. Details of its structure may influence how matrix polysaccharides interact with its distinctive hydrophobic and hydrophilic surfaces to form a strong yet extensible structure. Recent advances in this field include the first structures of bacterial and plant cellulose synthases and revised estimates of microfibril structure, reduced from 36 to 18 chains. New results also indicate that cellulose interactions with xyloglucan are more limited than commonly believed, whereas pectin–cellulose interactions are more prevalent. Computational results indicate that xyloglucan binds tightest to the hydrophobic surface of cellulose microfibrils. Wall extensibility may be controlled at limited regions (‘biomechanical hotspots’) where cellulose–cellulose contacts are made, potentially mediated by trace amounts of xyloglucan.

Accounting for Population Structure in Gene-by-Environment Interactions in Genome-Wide Association Studies Using Mixed Models.

PubMed

Sul, Jae Hoon; Bilow, Michael; Yang, Wen-Yun; Kostem, Emrah; Furlotte, Nick; He, Dan; Eskin, Eleazar

2016-03-01

Although genome-wide association studies (GWASs) have discovered numerous novel genetic variants associated with many complex traits and diseases, those genetic variants typically explain only a small fraction of phenotypic variance. Factors that account for phenotypic variance include environmental factors and gene-by-environment interactions (GEIs). Recently, several studies have conducted genome-wide gene-by-environment association analyses and demonstrated important roles of GEIs in complex traits. One of the main challenges in these association studies is to control effects of population structure that may cause spurious associations. Many studies have analyzed how population structure influences statistics of genetic variants and developed several statistical approaches to correct for population structure. However, the impact of population structure on GEI statistics in GWASs has not been extensively studied and nor have there been methods designed to correct for population structure on GEI statistics. In this paper, we show both analytically and empirically that population structure may cause spurious GEIs and use both simulation and two GWAS datasets to support our finding. We propose a statistical approach based on mixed models to account for population structure on GEI statistics. We find that our approach effectively controls population structure on statistics for GEIs as well as for genetic variants.

RNACompress: Grammar-based compression and informational complexity measurement of RNA secondary structure.

PubMed

Liu, Qi; Yang, Yu; Chen, Chun; Bu, Jiajun; Zhang, Yin; Ye, Xiuzi

2008-03-31

With the rapid emergence of RNA databases and newly identified non-coding RNAs, an efficient compression algorithm for RNA sequence and structural information is needed for the storage and analysis of such data. Although several algorithms for compressing DNA sequences have been proposed, none of them are suitable for the compression of RNA sequences with their secondary structures simultaneously. This kind of compression not only facilitates the maintenance of RNA data, but also supplies a novel way to measure the informational complexity of RNA structural data, raising the possibility of studying the relationship between the functional activities of RNA structures and their complexities, as well as various structural properties of RNA based on compression. RNACompress employs an efficient grammar-based model to compress RNA sequences and their secondary structures. The main goals of this algorithm are two fold: (1) present a robust and effective way for RNA structural data compression; (2) design a suitable model to represent RNA secondary structure as well as derive the informational complexity of the structural data based on compression. Our extensive tests have shown that RNACompress achieves a universally better compression ratio compared with other sequence-specific or common text-specific compression algorithms, such as Gencompress, winrar and gzip. Moreover, a test of the activities of distinct GTP-binding RNAs (aptamers) compared with their structural complexity shows that our defined informational complexity can be used to describe how complexity varies with activity. These results lead to an objective means of comparing the functional properties of heteropolymers from the information perspective. A universal algorithm for the compression of RNA secondary structure as well as the evaluation of its informational complexity is discussed in this paper. We have developed RNACompress, as a useful tool for academic users. Extensive tests have shown that RNACompress is a universally efficient algorithm for the compression of RNA sequences with their secondary structures. RNACompress also serves as a good measurement of the informational complexity of RNA secondary structure, which can be used to study the functional activities of RNA molecules.

RNACompress: Grammar-based compression and informational complexity measurement of RNA secondary structure

PubMed Central

Liu, Qi; Yang, Yu; Chen, Chun; Bu, Jiajun; Zhang, Yin; Ye, Xiuzi

2008-01-01

Background With the rapid emergence of RNA databases and newly identified non-coding RNAs, an efficient compression algorithm for RNA sequence and structural information is needed for the storage and analysis of such data. Although several algorithms for compressing DNA sequences have been proposed, none of them are suitable for the compression of RNA sequences with their secondary structures simultaneously. This kind of compression not only facilitates the maintenance of RNA data, but also supplies a novel way to measure the informational complexity of RNA structural data, raising the possibility of studying the relationship between the functional activities of RNA structures and their complexities, as well as various structural properties of RNA based on compression. Results RNACompress employs an efficient grammar-based model to compress RNA sequences and their secondary structures. The main goals of this algorithm are two fold: (1) present a robust and effective way for RNA structural data compression; (2) design a suitable model to represent RNA secondary structure as well as derive the informational complexity of the structural data based on compression. Our extensive tests have shown that RNACompress achieves a universally better compression ratio compared with other sequence-specific or common text-specific compression algorithms, such as Gencompress, winrar and gzip. Moreover, a test of the activities of distinct GTP-binding RNAs (aptamers) compared with their structural complexity shows that our defined informational complexity can be used to describe how complexity varies with activity. These results lead to an objective means of comparing the functional properties of heteropolymers from the information perspective. Conclusion A universal algorithm for the compression of RNA secondary structure as well as the evaluation of its informational complexity is discussed in this paper. We have developed RNACompress, as a useful tool for academic users. Extensive tests have shown that RNACompress is a universally efficient algorithm for the compression of RNA sequences with their secondary structures. RNACompress also serves as a good measurement of the informational complexity of RNA secondary structure, which can be used to study the functional activities of RNA molecules. PMID:18373878

Space Operations Center system analysis study extension. Volume 2: Programmatics and cost

NASA Technical Reports Server (NTRS)

1982-01-01

A summary of Space Operations Center (SOC) orbital space station costs, program options and program recommendations is presented. Program structure, hardware commonality, schedules and program phasing are considered. Program options are analyzed with respect to mission needs, design and technology options, and anticipated funding constraints. Design and system options are discussed.

Supramolecular Based Membrane Sensors

PubMed Central

Ganjali, Mohammad Reza; Norouzi, Parviz; Rezapour, Morteza; Faridbod, Farnoush; Pourjavid, Mohammad Reza

2006-01-01

Supramolecular chemistry can be defined as a field of chemistry, which studies the complex multi-molecular species formed from molecular components that have relatively simpler structures. This field has been subject to extensive research over the past four decades. This review discusses classification of supramolecules and their application in design and construction of ion selective sensors.

Use of Latent Profile Analysis in Studies of Gifted Students

ERIC Educational Resources Information Center

Mammadov, Sakhavat; Ward, Thomas J.; Cross, Jennifer Riedl; Cross, Tracy L.

2016-01-01

To date, in gifted education and related fields various conventional factor analytic and clustering techniques have been used extensively for investigation of the underlying structure of data. Latent profile analysis is a relatively new method in the field. In this article, we provide an introduction to latent profile analysis for gifted education…

Developing and Validating a Survey of Korean Early Childhood English Teachers' Knowledge

ERIC Educational Resources Information Center

Kim, Jung In

2015-01-01

The main purpose of this study is to develop and validate a valid measure of the early childhood (EC) English teacher knowledge. Through extensive literature review on second/foreign language (L2/FL) teacher knowledge, early childhood teacher knowledge and early childhood language teacher knowledge, and semi-structured interviews from current…

Hope, Trust, and Dreaming Big: Student-Athlete Identity and Athletic Divisional Reclassification

ERIC Educational Resources Information Center

Kissinger, Daniel B.; Newman, Richard E.; Miller, Michael T.

2015-01-01

Intercollegiate athletics are an indelible aspect of American higher education, and many collegiate athletes, particularly those at the Division I level, view their college careers as an extension of and springboard toward a professional sports career. This study is based on a series of semi-structured interviews with men's athletic administrators…

Sowing City Schools: Teachers and Garden Education in Havana and Philadelphia

ERIC Educational Resources Information Center

Bucher, Katie Ann

2012-01-01

This dissertation examines how pedagogies of sustainability are embedded in socio-cultural contexts and policy structures and driven by the localized actions of teachers. Through a comparative case study in two cities with extensive and varied school garden programs, Havana and Philadelphia, this dissertation analyzes the roles, understandings,…

Coping Strategies and Adaptation of Mothers of Children with Handicapping Conditions.

ERIC Educational Resources Information Center

Hooshyar, Nahid T.

Mothers' coping mechanisms and adaptations to having a handicapped child were analyzed through extensive structured interviews with mothers of eight preschool-aged Down syndrome children and a language impaired child. Three illustrative case studies are presented, and general conclusions are drawn. Mothers of Down syndrome children go through the…

Replication of Nonautonomous Retroelements in Soybean Appears to be Both Recent and Common

USDA-ARS?s Scientific Manuscript database

Retrotransposons and their remnants often constitute more than 50% of higher plant genomes and have had major impacts on genome structure. Although extensively studied in monocot crops such as maize and rice, the impact of retrotransposons on major dicot crop genomes is not well documented. Here w...

Global 4-H Network: Laying the Groundwork for Global Extension Opportunities

ERIC Educational Resources Information Center

Major, Jennifer; Miller, Rhonda

2012-01-01

A descriptive study examining 4-H programs in Africa, Asia, and Europe was conducted to provide understanding and direction in the establishment of a Global 4-H Network. Information regarding structure, organizational support, funding, and programming areas was gathered. Programs varied greatly by country, and many partnered with other 4-H…

Parenting Behaviour among Parents of Children with Autism Spectrum Disorder

ERIC Educational Resources Information Center

Lambrechts, Greet; Van Leeuwen, Karla; Boonen, Hannah; Maes, Bea; Noens, Ilse

2011-01-01

Contrary to the extensive amount of empirical findings about parental perceptions, parenting cognitions, and coping in families with a child with autism spectrum disorder (ASD), research about parenting itself is very scarce. A first goal of this study was to examine the factor structure and internal consistency of two scales to measure parenting…

STARS: An integrated general-purpose finite element structural, aeroelastic, and aeroservoelastic analysis computer program

NASA Technical Reports Server (NTRS)

Gupta, Kajal K.

1991-01-01

The details of an integrated general-purpose finite element structural analysis computer program which is also capable of solving complex multidisciplinary problems is presented. Thus, the SOLIDS module of the program possesses an extensive finite element library suitable for modeling most practical problems and is capable of solving statics, vibration, buckling, and dynamic response problems of complex structures, including spinning ones. The aerodynamic module, AERO, enables computation of unsteady aerodynamic forces for both subsonic and supersonic flow for subsequent flutter and divergence analysis of the structure. The associated aeroservoelastic analysis module, ASE, effects aero-structural-control stability analysis yielding frequency responses as well as damping characteristics of the structure. The program is written in standard FORTRAN to run on a wide variety of computers. Extensive graphics, preprocessing, and postprocessing routines are also available pertaining to a number of terminals.

Specificity of the femoral slump test for the assessment of experimentally induced anterior knee pain.

PubMed

Lai, Weng-Hang; Shih, Yi-Fen; Lin, Pei-Ling; Chen, Wen-Yin; Ma, Hsiao-Li

2012-12-01

To assess the specificity of the femoral slump test (FST) when assessing experimentally induced anterior knee pain. Cross-sectional, exploratory study. Research laboratory. Asymptomatic subjects (N=12; 6 men; 6 women) for the study. An experimental pain model was used to simulate anterior knee pain by injecting .25 mL of hypertonic saline solution (5% NaCl) into the medial infrapatellar fat pad. Not applicable. The changes in pain intensity and diameter after applying the structure differential maneuver (neck flexion/extension) during the FST were recorded and analyzed. Results revealed that the structure differential maneuver of the FST did not alter the pain intensity or diameter in 9 (neck extension) and 10 (neck flexion) out of 12 subjects, which meant that the FST provided appropriate testing responses in 75% to 83% cases when the anterior knee pain did not originate in neural tissues. The FST had a specificity of more than .75 when detecting nerve mechanosensitivity problems of anterior knee pain. Copyright © 2012 American Congress of Rehabilitation Medicine. Published by Elsevier Inc. All rights reserved.

The 3D structures of VDAC represent a native conformation

PubMed Central

Hiller, Sebastian; Abramson, Jeff; Mannella, Carmen; Wagner, Gerhard; Zeth, Kornelius

2010-01-01

The most abundant protein of the mitochondrial outer membrane is the voltage-dependent anion channel (VDAC), which facilitates the exchange of ions and molecules between mitochondria and cytosol and is regulated by interactions with other proteins and small molecules. VDAC has been extensively studied for more than three decades, and last year three independent investigations revealed a structure of VDAC-1 exhibiting 19 transmembrane β-strands, constituting a unique structural class of β-barrel membrane proteins. Here, we provide a historical perspective on VDAC research and give an overview of the experimental design used to obtain these structures. Furthermore, we validate the protein refolding approach and summarize biochemical and biophysical evidence that links the 19-stranded structure to the native form of VDAC. PMID:20708406

Effect of supramolecular structures on thermoplastic zein-lignin bionanocomposites.

PubMed

Oliviero, Maria; Verdolotti, Letizia; Di Maio, Ernesto; Aurilia, Marco; Iannace, Salvatore

2011-09-28

The effect of alkaline lignin (AL) and sodium lignosulfonate (LSS) on the structure of thermoplastic zein (TPZ) was studied. Protein structural changes and the nature of the physical interaction between lignin and zein were investigated by means of X-ray diffraction and Fourier transform infrared (FT-IR) spectroscopy and correlated with physical properties. Most relevant protein structural changes were observed at low AL concentration, where strong H-bondings between the functional groups of AL and the amino acids in zein induced a destructuring of inter- and intramolecular interactions in α-helix, β-sheet, and β-turn secondary structures. This destructuring allowed for an extensive protein conformational modification which, in turn, resulted in a strong improvement of the physical properties of the bionanocomposite.

Confirmatory Factor Analysis of a Brief Version of the Zarit Burden Interview in Black and White Dementia Caregivers

ERIC Educational Resources Information Center

Flynn Longmire, Crystal V.; Knight, Bob G.

2011-01-01

Purpose of the study: Although the Zarit Burden Interview (ZBI) is one of the most extensively used measures in research for caregiver burden, few researchers have examined its factor structure. Furthermore, though the ZBI has also been used in cross-group comparisons of burden, there have not been studies of whether or not it measures burden…

A Comparison of Rhetorical Move Structure of Applied Linguistics Research Articles Published in International and National Thai Journals

ERIC Educational Resources Information Center

Wannaruk, Anchalee; Amnuai, Wirada

2016-01-01

The rhetorical organization of research articles has attracted extensive attention in genre study, and the focus of move-based analysis is on the textual function. The primary aim of the present study was the comparison of the rhetorical moves of English research articles in the field of Applied Linguistics written by Thai first authors and…

The influence of tectonic inheritance on crustal extension style following failed subduction of continental crust: applications to metamorphic core complexes in Papua New Guinea

NASA Astrophysics Data System (ADS)

Biemiller, J.; Ellis, S. M.; Little, T.; Mizera, M.; Wallace, L. M.; Lavier, L.

2017-12-01

The structural, mechanical and geometric evolution of rifted continental crust depends on the lithospheric conditions in the region prior to the onset of extension. In areas where tectonic activity preceded rift initiation, structural and physical properties of the previous tectonic regime may be inherited by the rift and influence its development. Many continental rifts form and exhume metamorphic core complexes (MCCs), coherent exposures of deep crustal rocks which typically surface as arched or domed structures. MCCs are exhumed in regions where the faulted upper crust is displaced laterally from upwelling ductile material along a weak detachment fault. Some MCCs form during extensional inversion of a subduction thrust following failed subduction of continental crust, but the degree to which lithospheric conditions inherited from the preceding subduction phase control the extensional style in these systems remains unclear. For example, the Dayman Dome in Southeastern Papua New Guinea exposes prehnite-pumpellyite to greenschist facies rocks in a smooth 3 km-high dome exhumed with at least 24 km of slip along one main detachment normal fault, the Mai'iu Fault, which dips 21° at the surface. The extension driving this exhumation is associated with the cessation of northward subduction of Australian continental crust beneath the oceanic lithosphere of the Woodlark Plate. We use geodynamic models to explore the effect of pre-existing crustal structures inherited from the preceding subduction phase on the style of rifting. We show that different geometries and strengths of inherited subduction shear zones predict three distinct modes of subsequent rift development: 1) symmetric rifting by newly formed high-angle normal faults; 2) asymmetric rifting along a weak low-angle detachment fault extending from the surface to the brittle-ductile transition; and 3) extension along a rolling-hinge structure which exhumes deep crustal rocks in coherent rounded exposures. We propose the latter mode as an exhumation model for Dayman Dome and compare the model predictions to regional geophysical and geological evidence. Our models find that tectonically inherited subduction structures may strongly control subsequent extension style when the subduction thrust is weak and well-oriented for reactivation.

9. UPSTREAM EXTENSION TO 60' INFILTRATION PIPE: REINFORCEMENT DETAILS OF ...

Library of Congress Historic Buildings Survey, Historic Engineering Record, Historic Landscapes Survey

9. UPSTREAM EXTENSION TO 60' INFILTRATION PIPE: REINFORCEMENT DETAILS OF VALVE CONTROL STRUCTURE. Sheet A-20, July, 1939. File no. SA 342/29. - Prado Dam, Embankment, Santa Ana River near junction of State Highways 71 & 91, Corona, Riverside County, CA

"The Wonder Years" of XML.

ERIC Educational Resources Information Center

Gazan, Rich

2000-01-01

Surveys the current state of Extensible Markup Language (XML), a metalanguage for creating structured documents that describe their own content, and its implications for information professionals. Predicts that XML will become the common language underlying Web, word processing, and database formats. Also discusses Extensible Stylesheet Language…

Design and Experimental Verification of Deployable/Inflatable Ultra-Lightweight Structures

NASA Technical Reports Server (NTRS)

Pai, P. Frank

2004-01-01

Because launch cost of a space structural system is often proportional to the launch volume and mass and there is no significant gravity in space, NASA's space exploration programs and various science missions have stimulated extensive use of ultra-lightweight deployable/inflatable structures. These structures are named here as Highly Flexible Structures (HFSs) because they are designed to undergo large displacements, rotations, and/or buckling without plastic deformation under normal operation conditions. Except recent applications to space structural systems, HFSs have been used in many mechanical systems, civil structures, aerospace vehicles, home appliances, and medical devices to satisfy space limitations, provide special mechanisms, and/or reduce structural weight. The extensive use of HFSs in today's structural engineering reveals the need of a design and analysis software and a database system with design guidelines for practicing engineers to perform computer-aided design and rapid prototyping of HFSs. Also to prepare engineering students for future structural engineering requires a new and easy-to- understand method of presenting the complex mathematics of the modeling and analysis of HFSs. However, because of the high flexibility of HFSs, many unique challenging problems in the modeling, design and analysis of HFSs need to be studied. The current state of research on HFSs needs advances in the following areas: (1) modeling of large rotations using appropriate strain measures, (2) modeling of cross-section warpings of structures, (3) how to account for both large rotations and cross- section warpings in 2D (two-dimensional) and 1D structural theories, (4) modeling of thickness thinning of membranes due to inflation pressure, pretension, and temperature change, (5) prediction of inflated shapes and wrinkles of inflatable structures, (6) development of efficient numerical methods for nonlinear static and dynamic analyses, and (7) filling the gap between geometrically exact elastic analysis and elastoplastic analysis. The objectives of this research project were: (1) to study the modeling, design, and analysis of deployable/inflatable ultra-lightweight structures, (2) to perform numerical and experimental studies on the static and dynamic characteristics and deployability of HFSs, (3) to derive guidelines for designing HFSs, (4) to develop a MATLAB toolbox for the design, analysis, and dynamic animation of HFSs, and (5) to perform experiments and establish an adequate database of post-buckling characteristics of HFSs.

Effect of flame-tube head structure on combustion chamber performance

NASA Technical Reports Server (NTRS)

Gu, Minqqi

1986-01-01

The experimental combustion performance of a premixed, pilot-type flame tube with various head structures is discussed. The test study covers an extensive area: efficiency of the combustion chamber, quality of the outlet temperature field, limit of the fuel-lean blowout, ignition performance at ground starting, and carbon deposition. As a result of these tests, a nozzle was found which fits the premixed pilot flame tube well. The use of this nozzle optimized the performance of the combustion chamber. The tested models had premixed pilot chambers with two types of air-film-cooling structures, six types of venturi-tube structures, and secondary fuel nozzles with two small spray-cone angles.

Reliability and measurement error of active knee extension range of motion in a modified slump test position: a pilot study.

PubMed

Tucker, Neil; Reid, Duncan; McNair, Peter

2007-01-01

The slump test is a tool to assess the mechanosensitivity of the neuromeningeal structures within the vertebral canal. While some studies have investigated the reliability of aspects of this test within the same day, few have assessed the reliability across days. Therefore, the purpose of this pilot study was to investigate reliability when measuring active knee extension range of motion (AROM) in a modified slump test position within trials on a single day and across days. Ten male and ten female asymptomatic subjects, ages 20-49 (mean age 30.1, SD 6.4) participated in the study. Knee extension AROM in a modified slump position with the cervical spine in a flexed position and then in an extended position was measured via three trials on two separate days. Across three trials, knee extension AROM increased significantly with a mean magnitude of 2 degrees within days for both cervical spine positions (P>0.05). The findings showed that there was no statistically significant difference in knee extension AROM measurements across days (P>0.05). The intraclass correlation coefficients for the mean of the three trials across days were 0.96 (lower limit 95% CI: 0.90) with the cervical spine flexed and 0.93 (lower limit 95% CI: 0.83) with cervical extension. Measurement error was calculated by way of the typical error and 95% limits of agreement, and visually represented in Bland and Altman plots. The typical error for the cervical flexed and extended positions averaged across trials was 2.6 degrees and 3.3 degrees , respectively. The limits of agreement were narrow, and the Bland and Altman plots also showed minimal bias in the joint angles across days with a random distribution of errors across the range of measured angles. This study demonstrated that knee extension AROM could be reliably measured across days in subjects without pathology and that the measurement error was acceptable. Implications of variability over multiple trials are discussed. The modified set-up for the test using the Kincom dynamometer and elevated thigh position may be useful to clinical researchers in determining the mechanosensitivity of the nervous system.

Reliability and Measurement Error of Active Knee Extension Range of Motion in a Modified Slump Test Position: A Pilot Study

PubMed Central

Tucker, Neil; Reid, Duncan; McNair, Peter

2007-01-01

The slump test is a tool to assess the mechanosensitivity of the neuromeningeal structures within the vertebral canal. While some studies have investigated the reliability of aspects of this test within the same day, few have assessed the reliability across days. Therefore, the purpose of this pilot study was to investigate reliability when measuring active knee extension range of motion (AROM) in a modified slump test position within trials on a single day and across days. Ten male and ten female asymptomatic subjects, ages 20–49 (mean age 30.1, SD 6.4) participated in the study. Knee extension AROM in a modified slump position with the cervical spine in a flexed position and then in an extended position was measured via three trials on two separate days. Across three trials, knee extension AROM increased significantly with a mean magnitude of 2° within days for both cervical spine positions (P>0.05). The findings showed that there was no statistically significant difference in knee extension AROM measurements across days (P>0.05). The intraclass correlation coefficients for the mean of the three trials across days were 0.96 (lower limit 95% CI: 0.90) with the cervical spine flexed and 0.93 (lower limit 95% CI: 0.83) with cervical extension. Measurement error was calculated by way of the typical error and 95% limits of agreement, and visually represented in Bland and Altman plots. The typical error for the cervical flexed and extended positions averaged across trials was 2.6° and 3.3°, respectively. The limits of agreement were narrow, and the Bland and Altman plots also showed minimal bias in the joint angles across days with a random distribution of errors across the range of measured angles. This study demonstrated that knee extension AROM could be reliably measured across days in subjects without pathology and that the measurement error was acceptable. Implications of variability over multiple trials are discussed. The modified set-up for the test using the Kincom dynamometer and elevated thigh position may be useful to clinical researchers in determining the mechanosensitivity of the nervous system. PMID:19066666

High power experimental studies of hybrid photonic band gap accelerator structures

DOE PAGES

Zhang, JieXi; Munroe, Brian J.; Xu, Haoran; ...

2016-08-31

This paper reports the first high power tests of hybrid photonic band gap (PBG) accelerator structures. Three hybrid PBG (HPBG) structures were designed, built and tested at 17.14 GHz. Each structure had a triangular lattice array with 60 inner sapphire rods and 24 outer copper rods sandwiched between copper disks. The dielectric PBG band gap map allows the unique feature of overmoded operation in a TM 02 mode, with suppression of both lower order modes, such as the TM 11 mode, as well as higher order modes. The use of sapphire rods, which have negligible dielectric loss, required inclusion ofmore » the dielectric birefringence in the design. The three structures were designed to sequentially reduce the peak surface electric field. Simulations showed relatively high surface fields at the triple point as well as in any gaps between components in the clamped assembly. The third structure used sapphire rods with small pin extensions at each end and obtained the highest gradient of 19 MV/m, corresponding to a surface electric field of 78 MV/m, with a breakdown probability of 5×10 –1 per pulse per meter for a 100-ns input power pulse. Operation at a gradient above 20 MV/m led to runaway breakdowns with extensive light emission and eventual damage. For all three structures, multipactor light emission was observed at gradients well below the breakdown threshold. As a result, this research indicated that multipactor triggered at the triple point limited the operational gradient of the hybrid structure.« less

Structural basis for the recognition and cleavage of abasic DNA in Neisseria meningitidis

PubMed Central

Lu, Duo; Silhan, Jan; MacDonald, James T.; Carpenter, Elisabeth P.; Jensen, Kirsten; Tang, Christoph M.; Baldwin, Geoff S.; Freemont, Paul S.

2012-01-01

Base excision repair (BER) is a highly conserved DNA repair pathway throughout all kingdoms from bacteria to humans. Whereas several enzymes are required to complete the multistep repair process of damaged bases, apurinic-apyrimidic (AP) endonucleases play an essential role in enabling the repair process by recognizing intermediary abasic sites cleaving the phosphodiester backbone 5′ to the abasic site. Despite extensive study, there is no structure of a bacterial AP endonuclease bound to substrate DNA. Furthermore, the structural mechanism for AP-site cleavage is incomplete. Here we report a detailed structural and biochemical study of the AP endonuclease from Neisseria meningitidis that has allowed us to capture structural intermediates providing more complete snapshots of the catalytic mechanism. Our data reveal subtle differences in AP-site recognition and kinetics between the human and bacterial enzymes that may reflect different evolutionary pressures. PMID:23035246

Dynamical transitions in large systems of mean field-coupled Landau-Stuart oscillators: Extensive chaos and cluster states.

PubMed

Ku, Wai Lim; Girvan, Michelle; Ott, Edward

2015-12-01

In this paper, we study dynamical systems in which a large number N of identical Landau-Stuart oscillators are globally coupled via a mean-field. Previously, it has been observed that this type of system can exhibit a variety of different dynamical behaviors. These behaviors include time periodic cluster states in which each oscillator is in one of a small number of groups for which all oscillators in each group have the same state which is different from group to group, as well as a behavior in which all oscillators have different states and the macroscopic dynamics of the mean field is chaotic. We argue that this second type of behavior is "extensive" in the sense that the chaotic attractor in the full phase space of the system has a fractal dimension that scales linearly with N and that the number of positive Lyapunov exponents of the attractor also scales linearly with N. An important focus of this paper is the transition between cluster states and extensive chaos as the system is subjected to slow adiabatic parameter change. We observe discontinuous transitions between the cluster states (which correspond to low dimensional dynamics) and the extensively chaotic states. Furthermore, examining the cluster state, as the system approaches the discontinuous transition to extensive chaos, we find that the oscillator population distribution between the clusters continually evolves so that the cluster state is always marginally stable. This behavior is used to reveal the mechanism of the discontinuous transition. We also apply the Kaplan-Yorke formula to study the fractal structure of the extensively chaotic attractors.

Dynamical transitions in large systems of mean field-coupled Landau-Stuart oscillators: Extensive chaos and cluster states

NASA Astrophysics Data System (ADS)

Ku, Wai Lim; Girvan, Michelle; Ott, Edward

2015-12-01

In this paper, we study dynamical systems in which a large number N of identical Landau-Stuart oscillators are globally coupled via a mean-field. Previously, it has been observed that this type of system can exhibit a variety of different dynamical behaviors. These behaviors include time periodic cluster states in which each oscillator is in one of a small number of groups for which all oscillators in each group have the same state which is different from group to group, as well as a behavior in which all oscillators have different states and the macroscopic dynamics of the mean field is chaotic. We argue that this second type of behavior is "extensive" in the sense that the chaotic attractor in the full phase space of the system has a fractal dimension that scales linearly with N and that the number of positive Lyapunov exponents of the attractor also scales linearly with N. An important focus of this paper is the transition between cluster states and extensive chaos as the system is subjected to slow adiabatic parameter change. We observe discontinuous transitions between the cluster states (which correspond to low dimensional dynamics) and the extensively chaotic states. Furthermore, examining the cluster state, as the system approaches the discontinuous transition to extensive chaos, we find that the oscillator population distribution between the clusters continually evolves so that the cluster state is always marginally stable. This behavior is used to reveal the mechanism of the discontinuous transition. We also apply the Kaplan-Yorke formula to study the fractal structure of the extensively chaotic attractors.

Intrinsic hierarchical structural imperfections in a natural ceramic of bivalve shell with distinctly graded properties

PubMed Central

Jiao, Da; Liu, Zengqian; Zhang, Zhenjun; Zhang, Zhefeng

2015-01-01

Despite the extensive investigation on the structure of natural biological materials, insufficient attention has been paid to the structural imperfections by which the mechanical properties of synthetic materials are dominated. In this study, the structure of bivalve Saxidomus purpuratus shell has been systematically characterized quantitatively on multiple length scales from millimeter to sub-nanometer. It is revealed that hierarchical imperfections are intrinsically involved in the crossed-lamellar structure of the shell despite its periodically packed platelets. In particular, various favorable characters which are always pursued in synthetic materials, e.g. nanotwins and low-angle misorientations, have been incorporated herein. The possible contributions of these imperfections to mechanical properties are further discussed. It is suggested that the imperfections may serve as structural adaptations, rather than detrimental defects in the real sense, to help improve the mechanical properties of natural biological materials. This study may aid in understanding the optimizing strategies of structure and properties designed by nature, and accordingly, provide inspiration for the design of synthetic materials. PMID:26198844

Intrinsic hierarchical structural imperfections in a natural ceramic of bivalve shell with distinctly graded properties.

PubMed

Jiao, Da; Liu, Zengqian; Zhang, Zhenjun; Zhang, Zhefeng

2015-07-22

Despite the extensive investigation on the structure of natural biological materials, insufficient attention has been paid to the structural imperfections by which the mechanical properties of synthetic materials are dominated. In this study, the structure of bivalve Saxidomus purpuratus shell has been systematically characterized quantitatively on multiple length scales from millimeter to sub-nanometer. It is revealed that hierarchical imperfections are intrinsically involved in the crossed-lamellar structure of the shell despite its periodically packed platelets. In particular, various favorable characters which are always pursued in synthetic materials, e.g. nanotwins and low-angle misorientations, have been incorporated herein. The possible contributions of these imperfections to mechanical properties are further discussed. It is suggested that the imperfections may serve as structural adaptations, rather than detrimental defects in the real sense, to help improve the mechanical properties of natural biological materials. This study may aid in understanding the optimizing strategies of structure and properties designed by nature, and accordingly, provide inspiration for the design of synthetic materials.

Constraints on crustal structure in the Southeastern United States from the SUGAR 2 refraction seismic refraction experiment

NASA Astrophysics Data System (ADS)

Marzen, R. E.; Shillington, D. J.; Lizarralde, D.; Harder, S. H.

2016-12-01

The Southeastern United States is an ideal location to study the interactions between continental collision, extensive but short-lived magmatism, and continental rifting. Continental collision during the Alleghenian Orogeny ( 290 Ma) formed the supercontinent Pangea. Extension leading to the breakup of Pangea began 230 Ma, forming the South Georgia Basin and other rift basins. The extensive Central Atlantic Magmatic Province (CAMP) magmatism was emplaced at 200 Ma, and continental separation occurred afterwards. During these processes, part of the African continent was added to North America. Prior work has raised questions including (1) the location and geometry of the suture zone and implications for the style of collision (thin-skinned versus thick-skinned), (2) the role of pre-existing structures on later rifting, and (3) the distribution of magmatism, and possible relationships between magmatism and rifting. To address these questions, we present preliminary velocity models for the 400-km-long refraction seismic line from the SUwanee Suture and GA Rift basin experiment (SUGAR) Line 2. This line is central to CAMP magmatism, and crosses the South Georgia rift basin and two hypothesized locations for the ancient suture zone. The data were collected in August 2015 by a team of over 40 students and scientists. Fifteen shots spaced at 20-40 km were recorded by 1981 Texans spaced at 250 m. We observe refractions from the basin, crust, and upper mantle, and wide-angle reflections from the base of the sediments, within the crust, and from the Moho. Prominent mid crustal reflections may arise from the top of elevated lower crustal velocities and possible lower crustal layering. The starting velocity model and constraints on the upper sedimentary basin velocity structure are obtained through forward modeling, which show basin sediment thickness increasing to the South. We then invert for smooth 2D velocity structure using first arrivals (FAST) and a layered velocity model using refractions and reflections (RAYINVR) to evaluate the crust and upper mantle velocity structure. Model results will be compared to other geological and geophysical data, including the roughly parallel SUGAR Line 1, to examine along-strike changes in rift structure, suture structure, and evidence of magmatism.

Weak tectono-magmatic relationships along an obliquely convergent plate boundary: Sumatra, Indonesia

NASA Astrophysics Data System (ADS)

Acocella, Valerio; Bellier, Olivier; Sandri, Laura; Sébrier, Michel; Pramumijoyo, Subagyo

2018-02-01

The tectono-magmatic relationships along obliquely convergent plate boundaries, where strain partitioning promotes strike-slip structures along the volcanic arc, are poorly known. Here it is unclear if and, in case, how the strike-slip structures control volcanic processes, distribution and size. To better define the possible tectono-magmatic relationships along strike-slip arcs, we merge available information on the case study of Sumatra (Indonesia) with field structural data. The Sumatra arc (entire volcanic belt) consists of 48 active volcanoes. Of these, 46% lie within 10 km from the dextral Great Sumatra Fault (GSF), which carries most horizontal displacement on the overriding plate, whereas 27% lie at >20 km from the GSF. Among the volcanoes at <10 km from GSF, 48% show a possible structural relation to the GSF, whereas only 28% show a clear structural relation, lying in pull-aparts or releasing bends; these localized areas of transtension (local extensional zone) do not develop magmatic segments. There is no relation between the GSF along-strike slip rate variations and the volcanic productivity. The preferred N30°-N40°E volcano alignment and elongation are subparallel to the convergence vector or to the GSF. The structural field data, collected in the central and southern GSF, show, in addition to the dextral motions along NW-SE to N-S striking faults, also normal motions (extending WNW-ESE or NE-SW), suggesting local reactivations of the GSF. Overall, the collected data suggest a limited tectonic control on arc volcanism. The tectonic control is mostly expressed by the mean depth of the slab surface below the volcanoes (130±20 km) and, subordinately, local extension along the GSF. The latter, when WNW-ESE oriented (more common), may be associated with the overall tectonic convergence, as suggested by the structural data; conversely, when NE-SW oriented (less common), the extension may result from co- and post-seismic arc normal extension, as supported by the 2004 mega-earthquake measurements. Overall, the strike-slip arc of Sumatra has intermediate features between those of extensional and contractional arcs.

An extensive reef system at the Amazon River mouth

PubMed Central

Moura, Rodrigo L.; Amado-Filho, Gilberto M.; Moraes, Fernando C.; Brasileiro, Poliana S.; Salomon, Paulo S.; Mahiques, Michel M.; Bastos, Alex C.; Almeida, Marcelo G.; Silva, Jomar M.; Araujo, Beatriz F.; Brito, Frederico P.; Rangel, Thiago P.; Oliveira, Braulio C. V.; Bahia, Ricardo G.; Paranhos, Rodolfo P.; Dias, Rodolfo J. S.; Siegle, Eduardo; Figueiredo, Alberto G.; Pereira, Renato C.; Leal, Camille V.; Hajdu, Eduardo; Asp, Nils E.; Gregoracci, Gustavo B.; Neumann-Leitão, Sigrid; Yager, Patricia L.; Francini-Filho, Ronaldo B.; Fróes, Adriana; Campeão, Mariana; Silva, Bruno S.; Moreira, Ana P. B.; Oliveira, Louisi; Soares, Ana C.; Araujo, Lais; Oliveira, Nara L.; Teixeira, João B.; Valle, Rogerio A. B.; Thompson, Cristiane C.; Rezende, Carlos E.; Thompson, Fabiano L.

2016-01-01

Large rivers create major gaps in reef distribution along tropical shelves. The Amazon River represents 20% of the global riverine discharge to the ocean, generating up to a 1.3 × 106–km2 plume, and extensive muddy bottoms in the equatorial margin of South America. As a result, a wide area of the tropical North Atlantic is heavily affected in terms of salinity, pH, light penetration, and sedimentation. Such unfavorable conditions were thought to imprint a major gap in Western Atlantic reefs. We present an extensive carbonate system off the Amazon mouth, underneath the river plume. Significant carbonate sedimentation occurred during lowstand sea level, and still occurs in the outer shelf, resulting in complex hard-bottom topography. A permanent near-bottom wedge of ocean water, together with the seasonal nature of the plume’s eastward retroflection, conditions the existence of this extensive (~9500 km2) hard-bottom mosaic. The Amazon reefs transition from accretive to erosional structures and encompass extensive rhodolith beds. Carbonate structures function as a connectivity corridor for wide depth–ranging reef-associated species, being heavily colonized by large sponges and other structure-forming filter feeders that dwell under low light and high levels of particulates. The oxycline between the plume and subplume is associated with chemoautotrophic and anaerobic microbial metabolisms. The system described here provides several insights about the responses of tropical reefs to suboptimal and marginal reef-building conditions, which are accelerating worldwide due to global changes. PMID:27152336

An extensive reef system at the Amazon River mouth.

PubMed

Moura, Rodrigo L; Amado-Filho, Gilberto M; Moraes, Fernando C; Brasileiro, Poliana S; Salomon, Paulo S; Mahiques, Michel M; Bastos, Alex C; Almeida, Marcelo G; Silva, Jomar M; Araujo, Beatriz F; Brito, Frederico P; Rangel, Thiago P; Oliveira, Braulio C V; Bahia, Ricardo G; Paranhos, Rodolfo P; Dias, Rodolfo J S; Siegle, Eduardo; Figueiredo, Alberto G; Pereira, Renato C; Leal, Camille V; Hajdu, Eduardo; Asp, Nils E; Gregoracci, Gustavo B; Neumann-Leitão, Sigrid; Yager, Patricia L; Francini-Filho, Ronaldo B; Fróes, Adriana; Campeão, Mariana; Silva, Bruno S; Moreira, Ana P B; Oliveira, Louisi; Soares, Ana C; Araujo, Lais; Oliveira, Nara L; Teixeira, João B; Valle, Rogerio A B; Thompson, Cristiane C; Rezende, Carlos E; Thompson, Fabiano L

2016-04-01

Large rivers create major gaps in reef distribution along tropical shelves. The Amazon River represents 20% of the global riverine discharge to the ocean, generating up to a 1.3 × 10(6)-km(2) plume, and extensive muddy bottoms in the equatorial margin of South America. As a result, a wide area of the tropical North Atlantic is heavily affected in terms of salinity, pH, light penetration, and sedimentation. Such unfavorable conditions were thought to imprint a major gap in Western Atlantic reefs. We present an extensive carbonate system off the Amazon mouth, underneath the river plume. Significant carbonate sedimentation occurred during lowstand sea level, and still occurs in the outer shelf, resulting in complex hard-bottom topography. A permanent near-bottom wedge of ocean water, together with the seasonal nature of the plume's eastward retroflection, conditions the existence of this extensive (~9500 km(2)) hard-bottom mosaic. The Amazon reefs transition from accretive to erosional structures and encompass extensive rhodolith beds. Carbonate structures function as a connectivity corridor for wide depth-ranging reef-associated species, being heavily colonized by large sponges and other structure-forming filter feeders that dwell under low light and high levels of particulates. The oxycline between the plume and subplume is associated with chemoautotrophic and anaerobic microbial metabolisms. The system described here provides several insights about the responses of tropical reefs to suboptimal and marginal reef-building conditions, which are accelerating worldwide due to global changes.

Long-term effects of ovulation-stimulating drugs on cancer risk.

PubMed

Brinton, Louise

2007-07-01

Although nulliparity has been extensively related to the risk of ovarian, breast and endometrial cancers, with many studies showing the relationship largely attributable to infertility, treatment effects on cancer risk are poorly understood. Two early studies raised substantial concern when ovulation-stimulating drugs were linked with large increases in ovarian cancer, supporting the notion of an important aetiological role of incessant ovulation. Subsequent studies have been mainly reassuring, although some have suggested possible risk increases among nulligravid women, those with extensive follow-up, and those developing borderline tumours. Results regarding effects of fertility drugs on breast cancer risk are conflicting, with some showing no associations and others demonstrating possible risk increases, although for varying subgroups. In contrast, endometrial cancer results are more consistent, with two recent studies showing increased risks related to clomiphene usage. This is of interest given that clomiphene is structurally similar to tamoxifen, a drug extensively linked with this cancer. Given the recent marketing of fertility drugs and the fact that exposed women are only beginning to reach the cancer age range, further follow-up is necessary. This will also be important to fully resolve effects of exposures such as gonadotrophins, used more recently in conjunction with IVF.

78 FR 21109 - Manufacturing Extension Partnership (MEP) Center for Nebraska; Availability of Funds

Federal Register 2010, 2011, 2012, 2013, 2014

2013-04-09

... regionally-based MEP center and local technology resources. The management and operational structure of an... organizational or operational structure that, in whole or in part, delegates or transfers to another person... objectives? (1) Organizational Structure. Completeness and appropriateness of the organizational structure...

Structural impact detection with vibro-haptic interfaces

NASA Astrophysics Data System (ADS)

Jung, Hwee-Kwon; Park, Gyuhae; Todd, Michael D.

2016-07-01

This paper presents a new sensing paradigm for structural impact detection using vibro-haptic interfaces. The goal of this study is to allow humans to ‘feel’ structural responses (impact, shape changes, and damage) and eventually determine health conditions of a structure. The target applications for this study are aerospace structures, in particular, airplane wings. Both hardware and software components are developed to realize the vibro-haptic-based impact detection system. First, L-shape piezoelectric sensor arrays are deployed to measure the acoustic emission data generated by impacts on a wing. Unique haptic signals are then generated by processing the measured acoustic emission data. These haptic signals are wirelessly transmitted to human arms, and with vibro-haptic interface, human pilots could identify impact location, intensity and possibility of subsequent damage initiation. With the haptic interface, the experimental results demonstrate that human could correctly identify such events, while reducing false indications on structural conditions by capitalizing on human’s classification capability. Several important aspects of this study, including development of haptic interfaces, design of optimal human training strategies, and extension of the haptic capability into structural impact detection are summarized in this paper.

LOOS: an extensible platform for the structural analysis of simulations.

PubMed

Romo, Tod D; Grossfield, Alan

2009-01-01

We have developed LOOS (Lightweight Object-Oriented Structure-analysis library) as an object-oriented library designed to facilitate the rapid development of tools for the structural analysis of simulations. LOOS supports the native file formats of most common simulation packages including AMBER, CHARMM, CNS, Gromacs, NAMD, Tinker, and X-PLOR. Encapsulation and polymorphism are used to simultaneously provide a stable interface to the programmer and make LOOS easily extensible. A rich atom selection language based on the C expression syntax is included as part of the library. LOOS enables students and casual programmer-scientists to rapidly write their own analytical tools in a compact and expressive manner resembling scripting. LOOS is written in C++ and makes extensive use of the Standard Template Library and Boost, and is freely available under the GNU General Public License (version 3) LOOS has been tested on Linux and MacOS X, but is written to be portable and should work on most Unix-based platforms.

XCEDE: An Extensible Schema For Biomedical Data

PubMed Central

Gadde, Syam; Aucoin, Nicole; Grethe, Jeffrey S.; Keator, David B.; Marcus, Daniel S.; Pieper, Steve

2013-01-01

The XCEDE (XML-based Clinical and Experimental Data Exchange) XML schema, developed by members of the BIRN (Biomedical Informatics Research Network), provides an extensive metadata hierarchy for storing, describing and documenting the data generated by scientific studies. Currently at version 2.0, the XCEDE schema serves as a specification for the exchange of scientific data between databases, analysis tools, and web services. It provides a structured metadata hierarchy, storing information relevant to various aspects of an experiment (project, subject, protocol, etc.). Each hierarchy level also provides for the storage of data provenance information allowing for a traceable record of processing and/or changes to the underlying data. The schema is extensible to support the needs of various data modalities and to express types of data not originally envisioned by the developers. The latest version of the XCEDE schema and manual are available from http://www.xcede.org/ PMID:21479735

Stochastic and Deterministic Crystal Structure Solution Methods in GSAS-II: Monte Carlo/Simulated Annealing Versus Charge Flipping

DOE PAGES

Von Dreele, Robert

2017-08-29

One of the goals in developing GSAS-II was to expand from the capabilities of the original General Structure Analysis System (GSAS) which largely encompassed just structure refinement and post refinement analysis. GSAS-II has been written almost entirely in Python loaded with graphics, GUI and mathematical packages (matplotlib, pyOpenGL, wxpython, numpy and scipy). Thus, GSAS-II has a fully developed modern GUI as well as extensive graphical display of data and results. However, the structure and operation of Python has required new approaches to many of the algorithms used in crystal structure analysis. The extensions beyond GSAS include image calibration/integration as wellmore » as peak fitting and unit cell indexing for powder data which are precursors for structure solution. Structure solution within GSAS-II begins with either Pawley or LeBail extracted structure factors from powder data or those measured in a single crystal experiment. Both charge flipping and Monte Carlo-Simulated Annealing techniques are available; the former can be applied to (3+1) incommensurate structures as well as conventional 3D structures.« less

RNAstructure: software for RNA secondary structure prediction and analysis.

PubMed

Reuter, Jessica S; Mathews, David H

2010-03-15

To understand an RNA sequence's mechanism of action, the structure must be known. Furthermore, target RNA structure is an important consideration in the design of small interfering RNAs and antisense DNA oligonucleotides. RNA secondary structure prediction, using thermodynamics, can be used to develop hypotheses about the structure of an RNA sequence. RNAstructure is a software package for RNA secondary structure prediction and analysis. It uses thermodynamics and utilizes the most recent set of nearest neighbor parameters from the Turner group. It includes methods for secondary structure prediction (using several algorithms), prediction of base pair probabilities, bimolecular structure prediction, and prediction of a structure common to two sequences. This contribution describes new extensions to the package, including a library of C++ classes for incorporation into other programs, a user-friendly graphical user interface written in JAVA, and new Unix-style text interfaces. The original graphical user interface for Microsoft Windows is still maintained. The extensions to RNAstructure serve to make RNA secondary structure prediction user-friendly. The package is available for download from the Mathews lab homepage at http://rna.urmc.rochester.edu/RNAstructure.html.

Mid-Cretaceous oblique rifting of West Antarctica: Emplacement and rapid cooling of the Fosdick Mountains migmatite-cored gneiss dome

USGS Publications Warehouse

McFadden, Rory; Teyssier, Christian; Siddoway, Christine; Cosca, Michael A.; Fanning, C. Mark

2015-01-01

In Marie Byrd Land, West Antarctica, the Fosdick Mountains migmatite-cored gneiss dome was exhumed from mid- to lower middle crustal depths during the incipient stage of the West Antarctic Rift system in the mid-Cretaceous. Prior to and during exhumation, major crustal melting and deformation included transfer and emplacement of voluminous granitic material and numerous intrusions of mantle-derived diorite in dikes. A succession of melt- and magma-related structures formed at temperatures in excess of 665 ± 50 °C based on Ti-in-zircon thermometry. These record a transition from wrench to oblique extensional deformation that culminated in the development of the oblique South Fosdick Detachment zone. Solid-state fabrics within the detachment zone and overprinting brittle structures record translation of the detachment zone and dome to shallow levels.To determine the duration of exhumation and cooling, we sampled granite and gneisses at high spatial resolution for U–Pb zircon geochronology and 40Ar/39Ar hornblende and biotite thermochronology. U–Pb zircon crystallization ages for the youngest granites are 102 Ma. Three hornblende ages are 103 to 100 Ma and 12 biotite ages are 101 to 99 Ma. All overlap within uncertainty. The coincidence of zircon crystallization ages with 40Ar/39Ar cooling ages indicates cooling rates > 100 °C/m.y. that, when considered together with overprinting structures, indicates rapid exhumation of granite and migmatite from deep to shallow crustal levels within a transcurrent setting. Orientations of structures and age-constrained crosscutting relationships indicate counterclockwise rotation of stretching axes from oblique extension into nearly orthogonal extension with respect to the Marie Byrd Land margin. The rotation may be a result of localized extension arising from unroofing and arching of the Fosdick dome, extensional opening within a pull-apart zone, or changes in plate boundary configuration.The rapid tectonic and temperature evolution of the Fosdick Mountains dome lends support to recently developed numerical models of crustal flow and cooling in orogenic crust undergoing extension/transtension, and accords with numerous studies of migmatite-cored gneiss domes in transcurrent settings.

Spatial analysis of extension fracture systems: A process modeling approach

USGS Publications Warehouse

Ferguson, C.C.

1985-01-01

Little consensus exists on how best to analyze natural fracture spacings and their sequences. Field measurements and analyses published in geotechnical literature imply fracture processes radically different from those assumed by theoretical structural geologists. The approach adopted in this paper recognizes that disruption of rock layers by layer-parallel extension results in two spacing distributions, one representing layer-fragment lengths and another separation distances between fragments. These two distributions and their sequences reflect mechanics and history of fracture and separation. Such distributions and sequences, represented by a 2 ?? n matrix of lengthsL, can be analyzed using a method that is history sensitive and which yields also a scalar estimate of bulk extension, e (L). The method is illustrated by a series of Monte Carlo experiments representing a variety of fracture-and-separation processes, each with distinct implications for extension history. Resulting distributions of e (L)are process-specific, suggesting that the inverse problem of deducing fracture-and-separation history from final structure may be tractable. ?? 1985 Plenum Publishing Corporation.

Modulation of hemoglobin dynamics by an allosteric effector

DOE PAGES

Lal, Jyotsana; Maccarini, Marco; Fouquet, Peter; ...

2016-12-15

Hemoglobin (Hb) is an extensively studied paradigm of proteins that alter their function in response to allosteric effectors. Models of its action have been used as prototypes for structure-function relationships in many proteins, and models for the molecular basis of its function have been deeply studied and extensively argued. Recent reports suggest that dynamics may play an important role in its function. Relatively little is known about the slow, correlated motions of hemoglobin subunits in various structural states because experimental and computational strategies for their characterization are challenging. Allosteric effectors such as inositol hexaphosphate (IHP) bind to both deoxy-Hb andmore » HbCO, albeit at different sites, leading to a lowered oxygen affinity. The manner in which these effectors impact oxygen binding is unclear and may involve changes in structure, dynamics or both. Here we use neutron spin echo (NSE) measurements accompanied by wideangle x-ray scattering (WAXS) to show that binding of IHP to HbCO results in an increase in the rate of coordinated motions of Hb subunits relative to one another with little if any change in large scale structure. This increase of large-scale dynamics seems to be coupled with a decrease in the average magnitude of higher frequency modes of individual residues. Furthermore, these observations indicate that enhanced dynamic motions contribute to the functional changes induced by IHP and suggest that they may be responsible for the lowered oxygen affinity triggered by these effectors.« less

The topology of the cosmic web in terms of persistent Betti numbers

NASA Astrophysics Data System (ADS)

Pranav, Pratyush; Edelsbrunner, Herbert; van de Weygaert, Rien; Vegter, Gert; Kerber, Michael; Jones, Bernard J. T.; Wintraecken, Mathijs

2017-03-01

We introduce a multiscale topological description of the Megaparsec web-like cosmic matter distribution. Betti numbers and topological persistence offer a powerful means of describing the rich connectivity structure of the cosmic web and of its multiscale arrangement of matter and galaxies. Emanating from algebraic topology and Morse theory, Betti numbers and persistence diagrams represent an extension and deepening of the cosmologically familiar topological genus measure and the related geometric Minkowski functionals. In addition to a description of the mathematical background, this study presents the computational procedure for computing Betti numbers and persistence diagrams for density field filtrations. The field may be computed starting from a discrete spatial distribution of galaxies or simulation particles. The main emphasis of this study concerns an extensive and systematic exploration of the imprint of different web-like morphologies and different levels of multiscale clustering in the corresponding computed Betti numbers and persistence diagrams. To this end, we use Voronoi clustering models as templates for a rich variety of web-like configurations and the fractal-like Soneira-Peebles models exemplify a range of multiscale configurations. We have identified the clear imprint of cluster nodes, filaments, walls, and voids in persistence diagrams, along with that of the nested hierarchy of structures in multiscale point distributions. We conclude by outlining the potential of persistent topology for understanding the connectivity structure of the cosmic web, in large simulations of cosmic structure formation and in the challenging context of the observed galaxy distribution in large galaxy surveys.

Evolution of Flow channels and Dipolarization Using THEMIS Observations and Global MHD Simulations

NASA Astrophysics Data System (ADS)

El-Alaoui, M.; McPherron, R. L.; Nishimura, Y.

2017-12-01

We have extensively analyzed a substorm on March 14, 2008 for which we have observations from THEMIS spacecraft located beyond 9 RE near 2100 local time. The available data include an extensive network of all sky cameras and ground magnetometers that establish the times of various auroral and magnetic events. This arrangement provided an excellent data set with which to investigate meso-scale structures in the plasma sheet. We have used a global magnetohydrodynamic simulation to investigate the structure and dynamics of the magnetotail current sheet during this substorm. Both earthward and tailward flows were found in the observations as well as the simulations. The simulation shows that the flow channels follow tortuous paths that are often reflected or deflected before arriving at the inner magnetosphere. The simulation shows a sequence of fast flows and dipolarization events similar to what is seen in the data, though not at precisely the same times or locations. We will use our simulation results combined with the observations to investigate the global convection systems and current sheet structure during this event, showing how meso-scale structures fit into the context of the overall tail dynamics during this event. Our study includes determining the location, timing and strength of several current wedges and expansion onsets during an 8-hour interval.

Cryo-EM structure of the spinach chloroplast ribosome reveals the location of plastid-specific ribosomal proteins and extensions

PubMed Central

Graf, Michael; Arenz, Stefan; Huter, Paul; Dönhöfer, Alexandra; Nováček, Jiří

2017-01-01

Abstract Ribosomes are the protein synthesizing machines of the cell. Recent advances in cryo-EM have led to the determination of structures from a variety of species, including bacterial 70S and eukaryotic 80S ribosomes as well as mitoribosomes from eukaryotic mitochondria, however, to date high resolution structures of plastid 70S ribosomes have been lacking. Here we present a cryo-EM structure of the spinach chloroplast 70S ribosome, with an average resolution of 5.4 Å for the small 30S subunit and 3.6 Å for the large 50S ribosomal subunit. The structure reveals the location of the plastid-specific ribosomal proteins (RPs) PSRP1, PSRP4, PSRP5 and PSRP6 as well as the numerous plastid-specific extensions of the RPs. We discover many features by which the plastid-specific extensions stabilize the ribosome via establishing additional interactions with surrounding ribosomal RNA and RPs. Moreover, we identify a large conglomerate of plastid-specific protein mass adjacent to the tunnel exit site that could facilitate interaction of the chloroplast ribosome with the thylakoid membrane and the protein-targeting machinery. Comparing the Escherichia coli 70S ribosome with that of the spinach chloroplast ribosome provides detailed insight into the co-evolution of RP and rRNA. PMID:27986857

EFFECT OF INTENSE FUNCTIONAL TASK TRAINING UPON TEMPORAL STRUCTURE OF VARIABILITY OF UPPER EXTREMITY POST STROKE

PubMed Central

Sethi, Amit; Davis, Sandra; McGuirk, Theresa; Patterson, Tara S.; Richards, Lorie G.

2012-01-01

Study Design Quasi-experimental design Introduction Although the effectiveness of constraint induced movement therapy (CIMT) in upper extremity (UE) rehabilitation post stroke is well known, the efficacy of CIMT to enhance the temporal structure of variability in upper extremity movement is not known. Purpose The purpose of this study was to investigate whether CIMT could enhance temporal structure of variability in upper extremity movement in individuals with chronic stroke. Methods Six participants with chronic stroke underwent CIMT for 4 hours/day for 2 weeks. Participants performed three trials of functional reach-to-grasp before and after CIMT. Temporal structure of variability was determined by calculating approximate entropy (ApEn) in shoulder, elbow and wrist flexion/extension joint angles. Results ApEn increased post CIMT, however, statistical significance was not achieved (p > 0.0167). Conclusion Future studies with larger sample size are warranted to investigate the effect of CIMT upon temporal structure of variability in UE movement. PMID:23084461

Two-dimensional networks of brominated Y-shaped molecules on Au(111)

NASA Astrophysics Data System (ADS)

Jeon, Un Seung; Chang, Min Hui; Jang, Won-Jun; Lee, Soon-Hyung; Han, Seungwu; Kahng, Se-Jong

2018-02-01

In the design of supramolecular structures, Y-shaped molecules are useful to expand the structures in three different directions. The supramolecular structures of Y-shaped molecules with three halogen-ligands on surfaces have been extensively studied, but much less are done for those with six halogen-ligands. Here, we report on the intermolecular interactions of a Y-shaped molecule, 1,3,5-Tris(3,5-dibromophenyl)benzene, with six Br-ligands studied using scanning tunneling microscopy (STM). Honeycomb-like structures were observed on Au(111), and could be explained with chiral triple-nodes made of three Br···Br halogen bonds. Molecular models were proposed based on STM images and reproduced with density-functional theory calculations. Although the molecule has six Br-ligands, only three of them form Br···Br halogen bonds because of geometrical restrictions. Our study shows that halogenated Y-shaped molecules will be useful components for building supramolecular structures.

Co-evolution of payoff strategy and interaction strategy in prisoner's dilemma game

NASA Astrophysics Data System (ADS)

Zhang, Kangjie; Cheng, Hongyan

2016-11-01

Co-evolutionary dynamical models, providing a realistic paradigm for investigating complex system, have been extensively studied. In this paper, the co-evolution of payoff strategy and interaction strategy is studied. Starting with an initial Gaussian distribution of payoff strategy r with the mean u and the variance q, we focus on the final distribution of the payoff strategy. We find that final distribution of the payoff strategy may display different structures depending on parameters. In the ranges u < - 1 and u > 3, the distribution displays a single-peak structure which is symmetric about r = u. The distribution manifests itself as a double-peak structure in the range - 1 < u < 3 although a fake three-peak structure shows up in range 1 < u < 2. The explanations on the formation of different types of payoff strategy distributions are presented.

Turbulence study in the vicinity of piano key weir: relevance, instrumentation, parameters and methods

NASA Astrophysics Data System (ADS)

Tiwari, Harinarayan; Sharma, Nayan

2017-05-01

This research paper focuses on the need of turbulence, instruments reliable to capture turbulence, different turbulence parameters and some advance methodology which can decompose various turbulence structures at different levels near hydraulic structures. Small-scale turbulence research has valid prospects in open channel flow. The relevance of the study is amplified as we introduce any hydraulic structure in the channel which disturbs the natural flow and creates discontinuity. To recover this discontinuity, the piano key weir (PKW) might be used with sloped keys. Constraints of empirical results in the vicinity of PKW necessitate extensive laboratory experiments with fair and reliable instrumentation techniques. Acoustic Doppler velocimeter was established to be best suited within range of some limitations using principal component analysis. Wavelet analysis is proposed to decompose the underlying turbulence structure in a better way.

Voltage-Gated Potassium Channels: A Structural Examination of Selectivity and Gating

PubMed Central

Kim, Dorothy M.; Nimigean, Crina M.

2016-01-01

Voltage-gated potassium channels play a fundamental role in the generation and propagation of the action potential. The discovery of these channels began with predictions made by early pioneers, and has culminated in their extensive functional and structural characterization by electrophysiological, spectroscopic, and crystallographic studies. With the aid of a variety of crystal structures of these channels, a highly detailed picture emerges of how the voltage-sensing domain reports changes in the membrane electric field and couples this to conformational changes in the activation gate. In addition, high-resolution structural and functional studies of K+ channel pores, such as KcsA and MthK, offer a comprehensive picture on how selectivity is achieved in K+ channels. Here, we illustrate the remarkable features of voltage-gated potassium channels and explain the mechanisms used by these machines with experimental data. PMID:27141052

Tectono-sedimentary evolution of the Permian-Triassic extension event in the Zagros basin (Iran): results from analogue modelling

NASA Astrophysics Data System (ADS)

Madani-kivi, M.; Zulauf, G.

2015-12-01

Since the 1970s, the largest oil and gas reservoirs have been discovered in the Permian-Early Triassic formationsin Saudi Arabia. Thus, this time period is important for the discovery of new oil reserves in Iran. The Arabian passivecontinental margin has undergone lithospheric extension during the Permian-Triassic, which led to the formation of theNeo-Tethys. The aim of this paper is to describe the development of the continental rift basin in the Zagros region basedon the tectono-sedimentological evolution. We have studied well-log data to specify the distribution of synrift depositsin the Zagros and have related this information to the modelling. Environmental changes indicated by various sedimentarysequences, from a siliciclastic basin to a carbonate platform setting, are described. The Cambrian Hormuz salt, whichoverlies the metamorphosed Precambrian basement, becomes effective as a basal detachment layer influencing the styleof overburden deformation during the Permian-Triassic extension event. We have investigated the formation of variousstructures linked to the presence or absence of the Hormuz layer by analogue modelling and relating these structures to theLate Palaeozoic sedimentation. Based on results of the analogue modelling, we argue that the basal detachment layer (Hormuzseries) has contributed to the various structural styles of the extensional basin development in the Fars domain and theLorestan domain.

Structural studies of viperin, an antiviral radical SAM enzyme.

PubMed

Fenwick, Michael K; Li, Yue; Cresswell, Peter; Modis, Yorgo; Ealick, Steven E

2017-06-27

Viperin is an IFN-inducible radical S -adenosylmethionine (SAM) enzyme that inhibits viral replication. We determined crystal structures of an anaerobically prepared fragment of mouse viperin (residues 45-362) complexed with S -adenosylhomocysteine (SAH) or 5'-deoxyadenosine (5'-dAdo) and l-methionine (l-Met). Viperin contains a partial (βα) 6 -barrel fold with a disordered N-terminal extension (residues 45-74) and a partially ordered C-terminal extension (residues 285-362) that bridges the partial barrel to form an overall closed barrel structure. Cys84, Cys88, and Cys91 located after the first β-strand bind a [4Fe-4S] cluster. The active site architecture of viperin with bound SAH (a SAM analog) or 5'-dAdo and l-Met (SAM cleavage products) is consistent with the canonical mechanism of 5'-deoxyadenosyl radical generation. The viperin structure, together with sequence alignments, suggests that vertebrate viperins are highly conserved and that fungi contain a viperin-like ortholog. Many bacteria and archaebacteria also express viperin-like enzymes with conserved active site residues. Structural alignments show that viperin is similar to several other radical SAM enzymes, including the molybdenum cofactor biosynthetic enzyme MoaA and the RNA methyltransferase RlmN, which methylates specific nucleotides in rRNA and tRNA. The viperin putative active site contains several conserved positively charged residues, and a portion of the active site shows structural similarity to the GTP-binding site of MoaA, suggesting that the viperin substrate may be a nucleoside triphosphate of some type.

Real-time strategy video game experience and structural connectivity - A diffusion tensor imaging study.

PubMed

Kowalczyk, Natalia; Shi, Feng; Magnuski, Mikolaj; Skorko, Maciek; Dobrowolski, Pawel; Kossowski, Bartosz; Marchewka, Artur; Bielecki, Maksymilian; Kossut, Malgorzata; Brzezicka, Aneta

2018-06-20

Experienced video game players exhibit superior performance in visuospatial cognition when compared to non-players. However, very little is known about the relation between video game experience and structural brain plasticity. To address this issue, a direct comparison of the white matter brain structure in RTS (real time strategy) video game players (VGPs) and non-players (NVGPs) was performed. We hypothesized that RTS experience can enhance connectivity within and between occipital and parietal regions, as these regions are likely to be involved in the spatial and visual abilities that are trained while playing RTS games. The possible influence of long-term RTS game play experience on brain structural connections was investigated using diffusion tensor imaging (DTI) and a region of interest (ROI) approach in order to describe the experience-related plasticity of white matter. Our results revealed significantly more total white matter connections between occipital and parietal areas and within occipital areas in RTS players compared to NVGPs. Additionally, the RTS group had an altered topological organization of their structural network, expressed in local efficiency within the occipito-parietal subnetwork. Furthermore, the positive association between network metrics and time spent playing RTS games suggests a close relationship between extensive, long-term RTS game play and neuroplastic changes. These results indicate that long-term and extensive RTS game experience induces alterations along axons that link structures of the occipito-parietal loop involved in spatial and visual processing. © 2018 Wiley Periodicals, Inc.

Structural and functional aspects of the myosin essential light chain in cardiac muscle contraction

DOE Office of Scientific and Technical Information (OSTI.GOV)

Muthu, Priya; Wang, Li; Yuan, Chen-Ching

2012-04-02

The myosin essential light chain (ELC) is a structural component of the actomyosin cross-bridge, but its function is poorly understood, especially the role of the cardiac specific N-terminal extension in modulating actomyosin interaction. Here, we generated transgenic (Tg) mice expressing the A57G (alanine to glycine) mutation in the cardiac ELC known to cause familial hypertrophic cardiomyopathy (FHC). The function of the ELC N-terminal extension was investigated with the Tg-{Delta}43 mouse model, whose myocardium expresses a truncated ELC. Low-angle X-ray diffraction studies on papillary muscle fibers in rigor revealed a decreased interfilament spacing ({approx} 1.5 nm) and no alterations in cross-bridgemore » mass distribution in Tg-A57G mice compared to Tg-WT, expressing the full-length nonmutated ELC. The truncation mutation showed a 1.3-fold increase in I{sub 1,1}/I{sub 1,0}, indicating a shift of cross-bridge mass from the thick filament backbone toward the thin filaments. Mechanical studies demonstrated increased stiffness in Tg-A57G muscle fibers compared to Tg-WT or Tg-{Delta}43. The equilibrium constant for the cross-bridge force generation step was smallest in Tg-{Delta}43. These results support an important role for the N-terminal ELC extension in prepositioning the cross-bridge for optimal force production. Subtle changes in the ELC sequence were sufficient to alter cross-bridge properties and lead to pathological phenotypes.« less

In-cell RNA structure probing with SHAPE-MaP.

PubMed

Smola, Matthew J; Weeks, Kevin M

2018-06-01

This protocol is an extension to: Nat. Protoc. 10, 1643-1669 (2015); doi:10.1038/nprot.2015.103; published online 01 October 2015RNAs play key roles in many cellular processes. The underlying structure of RNA is an important determinant of how transcripts function, are processed, and interact with RNA-binding proteins and ligands. RNA structure analysis by selective 2'-hydroxyl acylation analyzed by primer extension (SHAPE) takes advantage of the reactivity of small electrophilic chemical probes that react with the 2'-hydroxyl group to assess RNA structure at nucleotide resolution. When coupled with mutational profiling (MaP), in which modified nucleotides are detected as internal miscodings during reverse transcription and then read out by massively parallel sequencing, SHAPE yields quantitative per-nucleotide measurements of RNA structure. Here, we provide an extension to our previous in vitro SHAPE-MaP protocol with detailed guidance for undertaking and analyzing SHAPE-MaP probing experiments in live cells. The MaP strategy works for both abundant-transcriptome experiments and for cellular RNAs of low to moderate abundance, which are not well examined by whole-transcriptome methods. In-cell SHAPE-MaP, performed in roughly 3 d, can be applied in cell types ranging from bacteria to cultured mammalian cells and is compatible with a variety of structure-probing reagents. We detail several strategies by which in-cell SHAPE-MaP can inform new biological hypotheses and emphasize downstream analyses that reveal sequence or structure motifs important for RNA interactions in cells.

Weak genetic divergence suggests extensive gene flow at the northeastern range limit of a dioecious Ficus species

NASA Astrophysics Data System (ADS)

Wang, Rong; Yang, Chang-Hong; Ding, Yuan-Yuan; Tong, Xin; Chen, Xiao-Yong

2018-07-01

Genus Ficus (Moraceae) plays a critical role in the sustainability and biodiversity in tropical and subtropical ecosystems. Ficus species and their host specific pollinating fig wasps (Agaonidae) represent a classic example of obligate mutualism. The genetic consequence of range expansion and range shift is still under investigation, but extensive gene flow and subsequently low level of genetic divergence may be expected to occur among the populations at the poleward range limit of some Ficus species due to long distance gene flow in the genus. In the present study, we focused on populations of F. sarmentosa var. henryi at its northeastern range limit in southeast China to test whether edge populations were genetically fragile. Consistent with our hypothesis, high level of genetic diversity and weak genetic structure were revealed in Ficus sarmentosa var. henryi populations, suggesting extensive gene flow at the plant's range limit. Long-distance movements of both pollinators and frugivorous birds were likely to be frequent and thereby predominantly contributed to the extensive gene flow at large scale despite of some magnificent landscape elements like huge mountains.

75 FR 68809 - Agency Information Collection Activities: Importation Bond Structure

Federal Register 2010, 2011, 2012, 2013, 2014

2010-11-09

... Activities: Importation Bond Structure AGENCY: U.S. Customs and Border Protection, Department of Homeland... Structure. This is a proposed extension and revision of an information collection that was previously...: Importation Bond Structure. OMB Number: 1651-0050. Form Numbers: 301 and 5297. Abstract: Bonds are used to...

Re-constructing our models of cellulose and primary cell wall assembly

DOE Office of Scientific and Technical Information (OSTI.GOV)

Cosgrove, Daniel J.

2014-11-16

The cellulose microfibril has more subtlety than is commonly recognized. Details of its structure may influence how matrix polysaccharides interact with its distinctive hydrophobic and hydrophilic surfaces to form a strong yet extensible structure. We report that recent advances in this field include the first structures of bacterial and plant cellulose synthases and revised estimates of microfibril structure, reduced from 36 to 18 chains. New results also indicate that cellulose interactions with xyloglucan are more limited than commonly believed, whereas pectin-cellulose interactions are more prevalent. Computational results indicate that xyloglucan binds tightest to the hydrophobic surface of cellulose microfibrils. Finally,more » wall extensibility may be controlled at limited regions (“biomechanical hotspots”) where cellulose-cellulose contacts are made, potentially mediated by trace amounts of xyloglucan.« less

Damping of composite plate for space structures: Prediction and measurement methods

NASA Astrophysics Data System (ADS)

Marchetti, M.; Morganti, F.; Mucciante, L.; Bruno, C.

Composite materials are extensively used for space structures: the sandwich and laminate panels are now part of the current manufacturing technology for spacecraft and antenna reflectors. Depending on the applications, some mechanical parameters are considered driving in the design, in order to satisfy the required structural performance. Among them, the knowledge of the damping is necessary to evaluate the dynamic behaviour of the structures. That particularly applies to the composite structures for space applications; for which an optimization of their mass versus their stiffness is attempted to take into account both launch and on station environments. The prediction of the damping factors of composites is rather difficult since it depends not only on the nature of the materials, which are in general neither homogeneous nor isotropic, but also on the kind of structures (i.e. size and shape) and on the manufacturing methodology, due to the strong non-linearity in the material behaviour. All the above is also impacted by the tendency of these materials to microcracking under stress. This phenomenon, mainly correlated to the cyclic loads introduced by thermal ageing, produces a variation of damping with time. For these reasons an evaluation of the damping characteristics of this kind of structure has been generally obtained by tests on full scale hardware or specimens with suitable dimension, being any prediction method rather difficult to apply. The purpose of this work is to study the damping behaviour of Gr/Ep, Kevlar/Ep and Glass Fiber/Ep composites which are extensively used in space structures, starting from test results on beam and plate shaped specimens. Experimental evidence will be fitted in an analytical and numerical study, the purpose of which is to correlate the energy dissipated in the composite to the lamination typology. Using a Finite Element Method, the amount of energy dissipated for each mode will be also evaluated, providing the correlations with the test results obtained with a modal analyzer.

Early Postoperative Results of Percutaneous Needle Fasciotomy in 451 Patients with Dupuytren Disease.

PubMed

Molenkamp, Sanne; Schouten, Tanneke A M; Broekstra, Dieuwke C; Werker, Paul M N; Moolenburgh, J Daniel

2017-06-01

Percutaneous needle fasciotomy is a minimally invasive treatment modality for Dupuytren disease. In this study, the authors analyzed the efficacy and complication rate of percutaneous needle fasciotomy using a statistical method that takes the multilevel structure of data, regarding multiple measurements from the same patient, into account. The data of 470 treated rays from 451 patients with Dupuytren disease that underwent percutaneous needle fasciotomy were analyzed retrospectively. The authors described the early postoperative results of percutaneous needle fasciotomy and applied linear mixed models to compare mean correction of passive extension deficit between joints and efficacy of primary versus secondary percutaneous needle fasciotomy. Mean preoperative passive extension deficits at the metacarpophalangeal, proximal interphalangeal, and distal interphalangeal joints were 37, 40, and 31 degrees, respectively. Mean preoperative total passive extension deficit was 54 degrees. Results were excellent, with a mean total passive extension deficit correction of 85 percent. Percutaneous needle fasciotomy was most effective for metacarpophalangeal joints and less effective for proximal interphalangeal and distal interphalangeal joints. Secondary percutaneous needle fasciotomy was as effective as primary percutaneous needle fasciotomy. Complications were rare and mostly minor. The results of this study confirm that percutaneous needle fasciotomy is an effective and safe treatment modality for patients with mild to moderate disease who prefer a minimally invasive procedure. Therapeutic, IV.

Large space structures controls research and development at Marshall Space Flight Center: Status and future plans

NASA Technical Reports Server (NTRS)

Buchanan, H. J.

1983-01-01

Work performed in Large Space Structures Controls research and development program at Marshall Space Flight Center is described. Studies to develop a multilevel control approach which supports a modular or building block approach to the buildup of space platforms are discussed. A concept has been developed and tested in three-axis computer simulation utilizing a five-body model of a basic space platform module. Analytical efforts have continued to focus on extension of the basic theory and subsequent application. Consideration is also given to specifications to evaluate several algorithms for controlling the shape of Large Space Structures.

A repository based on a dynamically extensible data model supporting multidisciplinary research in neuroscience.

PubMed

Corradi, Luca; Porro, Ivan; Schenone, Andrea; Momeni, Parastoo; Ferrari, Raffaele; Nobili, Flavio; Ferrara, Michela; Arnulfo, Gabriele; Fato, Marco M

2012-10-08

Robust, extensible and distributed databases integrating clinical, imaging and molecular data represent a substantial challenge for modern neuroscience. It is even more difficult to provide extensible software environments able to effectively target the rapidly changing data requirements and structures of research experiments. There is an increasing request from the neuroscience community for software tools addressing technical challenges about: (i) supporting researchers in the medical field to carry out data analysis using integrated bioinformatics services and tools; (ii) handling multimodal/multiscale data and metadata, enabling the injection of several different data types according to structured schemas; (iii) providing high extensibility, in order to address different requirements deriving from a large variety of applications simply through a user runtime configuration. A dynamically extensible data structure supporting collaborative multidisciplinary research projects in neuroscience has been defined and implemented. We have considered extensibility issues from two different points of view. First, the improvement of data flexibility has been taken into account. This has been done through the development of a methodology for the dynamic creation and use of data types and related metadata, based on the definition of "meta" data model. This way, users are not constrainted to a set of predefined data and the model can be easily extensible and applicable to different contexts. Second, users have been enabled to easily customize and extend the experimental procedures in order to track each step of acquisition or analysis. This has been achieved through a process-event data structure, a multipurpose taxonomic schema composed by two generic main objects: events and processes. Then, a repository has been built based on such data model and structure, and deployed on distributed resources thanks to a Grid-based approach. Finally, data integration aspects have been addressed by providing the repository application with an efficient dynamic interface designed to enable the user to both easily query the data depending on defined datatypes and view all the data of every patient in an integrated and simple way. The results of our work have been twofold. First, a dynamically extensible data model has been implemented and tested based on a "meta" data-model enabling users to define their own data types independently from the application context. This data model has allowed users to dynamically include additional data types without the need of rebuilding the underlying database. Then a complex process-event data structure has been built, based on this data model, describing patient-centered diagnostic processes and merging information from data and metadata. Second, a repository implementing such a data structure has been deployed on a distributed Data Grid in order to provide scalability both in terms of data input and data storage and to exploit distributed data and computational approaches in order to share resources more efficiently. Moreover, data managing has been made possible through a friendly web interface. The driving principle of not being forced to preconfigured data types has been satisfied. It is up to users to dynamically configure the data model for the given experiment or data acquisition program, thus making it potentially suitable for customized applications. Based on such repository, data managing has been made possible through a friendly web interface. The driving principle of not being forced to preconfigured data types has been satisfied. It is up to users to dynamically configure the data model for the given experiment or data acquisition program, thus making it potentially suitable for customized applications.

A repository based on a dynamically extensible data model supporting multidisciplinary research in neuroscience

PubMed Central

2012-01-01

Background Robust, extensible and distributed databases integrating clinical, imaging and molecular data represent a substantial challenge for modern neuroscience. It is even more difficult to provide extensible software environments able to effectively target the rapidly changing data requirements and structures of research experiments. There is an increasing request from the neuroscience community for software tools addressing technical challenges about: (i) supporting researchers in the medical field to carry out data analysis using integrated bioinformatics services and tools; (ii) handling multimodal/multiscale data and metadata, enabling the injection of several different data types according to structured schemas; (iii) providing high extensibility, in order to address different requirements deriving from a large variety of applications simply through a user runtime configuration. Methods A dynamically extensible data structure supporting collaborative multidisciplinary research projects in neuroscience has been defined and implemented. We have considered extensibility issues from two different points of view. First, the improvement of data flexibility has been taken into account. This has been done through the development of a methodology for the dynamic creation and use of data types and related metadata, based on the definition of “meta” data model. This way, users are not constrainted to a set of predefined data and the model can be easily extensible and applicable to different contexts. Second, users have been enabled to easily customize and extend the experimental procedures in order to track each step of acquisition or analysis. This has been achieved through a process-event data structure, a multipurpose taxonomic schema composed by two generic main objects: events and processes. Then, a repository has been built based on such data model and structure, and deployed on distributed resources thanks to a Grid-based approach. Finally, data integration aspects have been addressed by providing the repository application with an efficient dynamic interface designed to enable the user to both easily query the data depending on defined datatypes and view all the data of every patient in an integrated and simple way. Results The results of our work have been twofold. First, a dynamically extensible data model has been implemented and tested based on a “meta” data-model enabling users to define their own data types independently from the application context. This data model has allowed users to dynamically include additional data types without the need of rebuilding the underlying database. Then a complex process-event data structure has been built, based on this data model, describing patient-centered diagnostic processes and merging information from data and metadata. Second, a repository implementing such a data structure has been deployed on a distributed Data Grid in order to provide scalability both in terms of data input and data storage and to exploit distributed data and computational approaches in order to share resources more efficiently. Moreover, data managing has been made possible through a friendly web interface. The driving principle of not being forced to preconfigured data types has been satisfied. It is up to users to dynamically configure the data model for the given experiment or data acquisition program, thus making it potentially suitable for customized applications. Conclusions Based on such repository, data managing has been made possible through a friendly web interface. The driving principle of not being forced to preconfigured data types has been satisfied. It is up to users to dynamically configure the data model for the given experiment or data acquisition program, thus making it potentially suitable for customized applications. PMID:23043673

Ductile extension of syn-magmatic lower crusts, with application to volcanic passive margins: the Ivrea Zone (Southern Alps, Italy)

NASA Astrophysics Data System (ADS)

Bidault, Marie; Geoffroy, Laurent; Arbaret, Laurent; Aubourg, Charles

2017-04-01

Deep seismic reflection profiles of present-day volcanic passive margins often show a 2-layered lower crust, from top to bottom: an apparently ductile 12 km-thick middle-lower layer (LC1) of strong folded reflectors and a 4 km-thick supra-Moho layer (LC2) of horizontal and parallel reflectors. Those layers appear to be structurally disconnected and to develop at the early stages of margins evolution. A magmatic origin has been suggested by several studies to explain those strong reflectors, favoring mafic sills intrusion hypothesis. Overlying mafic and acidic extrusives (Seaward Dipping Reflectors sequences) are bounded by continentward-dipping detachment faults rooting in, and co-structurated with, the ductile part of the lower crust (LC1). Consequently the syn-rift to post-rift evolution of volcanic passive margins (and passive margins in general) largely depends on the nature and the properties of the lower crust, yet poorly understood. We propose to investigate the properties and rheology of a magma-injected extensional lower crust with a field analogue, the Ivrea Zone (Southern Alps, Italy). The Ivrea Zone displays a complete back-thrusted section of a Variscan continental lower crust that first underwent gravitational collapse, and then lithospheric extension. This Late Paleozoic extension was apparently associated with the continuous intrusion of a large volume of mafic to acid magma. Both the magma timing and volume, and the structure of the Ivrea lower crust suggest that this section represents an adequate analogue of a syn-magmatic in-extension mafic rift zone which aborted at the end of the Permian. Notably, we may recognize the 2 layers LC1 and LC2. From a number of tectonic observations, we reconstitute the whole tectonic history of the area, focusing on the strain field evolution with time, in connection with mafic magma injection. We compare those results with available data from extensional mafic lower crusts at rifts and margins.

Crack propagation analysis using acoustic emission sensors for structural health monitoring systems.

PubMed

Kral, Zachary; Horn, Walter; Steck, James

2013-01-01

Aerospace systems are expected to remain in service well beyond their designed life. Consequently, maintenance is an important issue. A novel method of implementing artificial neural networks and acoustic emission sensors to form a structural health monitoring (SHM) system for aerospace inspection routines was the focus of this research. Simple structural elements, consisting of flat aluminum plates of AL 2024-T3, were subjected to increasing static tensile loading. As the loading increased, designed cracks extended in length, releasing strain waves in the process. Strain wave signals, measured by acoustic emission sensors, were further analyzed in post-processing by artificial neural networks (ANN). Several experiments were performed to determine the severity and location of the crack extensions in the structure. ANNs were trained on a portion of the data acquired by the sensors and the ANNs were then validated with the remaining data. The combination of a system of acoustic emission sensors, and an ANN could determine crack extension accurately. The difference between predicted and actual crack extensions was determined to be between 0.004 in. and 0.015 in. with 95% confidence. These ANNs, coupled with acoustic emission sensors, showed promise for the creation of an SHM system for aerospace systems.

Structural evolution of the east Sierra Valley system (Owens Valley and vicinity), California: a geologic and geophysical synthesis

USGS Publications Warehouse

Stevens, Calvin H.; Stone, Paul; Blakely, Richard J.

2013-01-01

The tectonically active East Sierra Valley System (ESVS), which comprises the westernmost part of the Walker Lane-Eastern California Shear Zone, marks the boundary between the highly extended Basin and Range Province and the largely coherent Sierra Nevada-Great Valley microplate (SN-GVm), which is moving relatively NW. The recent history of the ESVS is characterized by oblique extension partitioned between NNW-striking normal and strike-slip faults oriented at an angle to the more northwesterly relative motion of the SN-GVm. Spatially variable extension and right-lateral shear have resulted in a longitudinally segmented valley system composed of diverse geomorphic and structural elements, including a discontinuous series of deep basins detected through analysis of isostatic gravity anomalies. Extension in the ESVS probably began in the middle Miocene in response to initial westward movement of the SN-GVm relative to the Colorado Plateau. At ca. 3-3.5 Ma, the SN-GVm became structurally separated from blocks directly to the east, resulting in significant basin-forming deformation in the ESVS. We propose a structural model that links high-angle normal faulting in the ESVS with coeval low-angle detachment faulting in adjacent areas to the east.

Dissipation in graphene and nanotube resonators

NASA Astrophysics Data System (ADS)

Seoánez, C.; Guinea, F.; Castro Neto, A. H.

2007-09-01

Different damping mechanisms in graphene nanoresonators are studied: charges in the substrate, ohmic losses in the substrate and the graphene sheet, breaking and healing of surface bonds (Velcro effect), two level systems, attachment losses, and thermoelastic losses. We find that, for realistic structures and contrary to semiconductor resonators, dissipation is dominated by ohmic losses in the graphene layer and metallic gate. An extension of this study to carbon nanotube-based resonators is presented.

Otitis Media, the Quality of Child Care, and the Social/Communicative Behavior of Toddlers: A Replication and Extension

ERIC Educational Resources Information Center

Vernon-Feagans, Lynne; Manlove, Elizabeth E.

2005-01-01

The purpose of this study was to examine the effects of otitis media (OM) and the quality of child care on the social and communicative behaviors of toddlers, using a cumulative risk framework that included moderation. The study followed 72 children who began child care in infancy. Both process and structural aspects of the quality of 11 child…

Disadvantaged Children and Their First School Experiences: ETS-Head Start Longitudinal Study: Structure and Development of Cognitive Competencies and Styles Prior to School Entry.

ERIC Educational Resources Information Center

Shipman, Virginia C.; And Others

In a continuing description of a Head Start longitudinal study, analyses are presented of the interrelationships among individual measures of the child's performances prior to school entry, accompanied by brief descriptions of the tasks and the scores used. Despite the size and extensiveness of the data base, the findings are considered tentative…

Preliminary study for a numerical aerodynamic simulation facility. Phase 1: Extension

NASA Technical Reports Server (NTRS)

Lincoln, N. R.

1978-01-01

Functional requirements and preliminary design data were identified for use in the design of all system components and in the construction of a facility to perform aerodynamic simulation for airframe design. A skeleton structure of specifications for the flow model processor and monitor, the operating system, and the language and its compiler is presented.

Studies on the Food Additive Propyl Gallate: Synthesis, Structural Characterization, and Evaluation of the Antioxidant Activity

ERIC Educational Resources Information Center

Garrido, Jorge; Garrido, E. Manuela; Borges, Fernanda

2012-01-01

Antioxidants are additives largely used in industry for delaying, retarding, or preventing the development of oxidative deterioration. Propyl gallate (E310) is a phenolic antioxidant extensively used in the food, cosmetics, and pharmaceutical industries. A series of lab experiments have been developed to teach students about the importance and…

Anticipating College Enrollment: Adapting "SuccessNavigator"® for High School Students. Research Report. ETS RR-15-37

ERIC Educational Resources Information Center

Rikoon, Samuel H.; Liebtag, Travis; Olivera-Aguilar, Margarita; Steinberg, Jonathan; Robbins, Steven B.

2015-01-01

In this report, we describe the development of an extension of the "SuccessNavigator"® assessment for late high school settings. We discuss the assessment's conceptualization and support its application with psychometric studies detailing scale development in terms of structural analyses, reliability, and several other aspects of…

Evolutionary Functions of Social Play: Life Histories, Sex Differences, and Emotion Regulation

ERIC Educational Resources Information Center

LaFreniere, Peter

2011-01-01

Many research findings about animal play apply to children's play, revealing structural and functional similarities with mammals in general and primates in particular. After an introduction to life-history theory, and before turning to humans, the author reviews research about the two mammals in which play has been studied the most extensively:…

The Salience of Ethnicity at a Multiethnic Urban High School from the Students' Perspective.

ERIC Educational Resources Information Center

Semons, Maryann

The articulation or suppression of ethnicity among high school students depends on the individual's estimation of the relevancy of ethnicity, an estimation linked to structural factors in society. Data for this ethnographic study were derived from extensive observations of students by a participant-observer at a multiethnic urban high school. The…

The Role of Extensive Recasts in Error Detection and Correction by Adult ESL Students

ERIC Educational Resources Information Center

Hawkes, Laura; Nassaji, Hossein

2016-01-01

Most of the laboratory studies on recasts have examined the role of intensive recasts provided repeatedly on the same target structure. This is different from the original definition of recasts as the reformulation of learner errors as they occur naturally and spontaneously in the course of communicative interaction. Using a within-group research…

The Relationship between Oral and Written Narratives: A Three-Year Longitudinal Study of Narrative Cohesion, Coherence, and Structure

ERIC Educational Resources Information Center

Pinto, Giuliana; Tarchi, Christian; Bigozzi, Lucia

2015-01-01

Background: The relationship between oral language and the writing process at early acquisition stages and the ways the former can enhance or limit the latter has not been researched extensively. Aims: The predictive relationship between kindergarten oral narrative competence and the first- and second-grade written narrative competence was…

Completing the Task Procedure or Focusing on Form: Contextualizing Grammar Instruction via Task-Based Teaching

ERIC Educational Resources Information Center

Saraç, Hatice Sezgi

2018-01-01

In this study, it was aimed to compare two distinct methodologies of grammar instruction: task-based and form-focused teaching. Within the application procedure, which lasted for one academic term, two groups of tertiary level learners (N = 53) were exposed to the same sequence of target structures, extensive writing activities and evaluation…

Photonic Crystals on the Wing

DTIC Science & Technology

2009-04-30

The Green Hairstreak butterfly has ventrally scales consisting of 3D gyroid domains acting as photonic crystals, which can be easily...study on the structural coloration of the Green Hairstreak , Callophrys rubi. Extensive experimental measurements have been complemented with three...colorations, produced by purely dielectric materials are widely encountered [1-3]. Famous examples are the metallic- green buprestid and golden scarab

R. & D. in Psychometrics: Technical Reports on Latent Structure Models.

ERIC Educational Resources Information Center

Wilcox, Rand R.

This document contains three papers from the Methodology Project of the Center for the Study of Evaluation. Methods for characterizing test accuracy are reported in the first two papers. "Bounds on the K Out of N Reliability of a Test, and an Exact Test for Hierarchically Related Items" describes and illustrates how an extension of a…

"Brain Gain Statt (instead of) Brain Drain": The Role of English in German Education

ERIC Educational Resources Information Center

Hilgendorf, Suzanne K.

2005-01-01

Although there is extensive research on Anglicisms in the German language e.g. Carstensen, 1965; Carstensen, Busse & Schmude, 19936; Fink, 1970, 1980, 1995; Grlach, 2002, few studies look beyond lexical borrowing and structural impact to consider other aspects and dimensions of English-German contact in the Federal Republic of Germany. This…

Tandem Mass Spectrometry for Structural Identification of Sesquiterpene alkaloids from the stems of dendrobium nobile using LC-QToF3

USDA-ARS?s Scientific Manuscript database

Dendrobium nobile is one of the fundamental herbs in traditional Chinese medicine (TCM). Sesquiterpene alkaloids are the main active components in this plant. Due to weak ultraviolet absorption and low content in D. nobile, these sesquiterpene alkaloids have not been extensively studied using chroma...

Enduring Reputations: The Durable Structure of Class, Knowledge, and Status in Higher Education

ERIC Educational Resources Information Center

Stich, Amy Elizabeth

2010-01-01

More than a decade ago, art historian Carol Duncan (1993) questioned the legitimacy of the democratization of an "elite" liberal arts education, challenging assumptions held by educators, administrators, and scholars that "the democratization of an elite liberal arts education is possible." This study is a direct extension of Professor Duncan's…

YF-12 Experiments Symposium, Volume 1

NASA Technical Reports Server (NTRS)

1978-01-01

Papers presented by personnel from the Dryden Flight Research Center, the Lewis Research Center, and the Ames Research Center are presented. Topics cover propulsion system performance, inlet time varying distortion, structures, aircraft controls, propulsion controls, and aerodynamics. The reports were based on analytical studies, laboratory experiments, wind tunnel tests, and extensive flight research with two YF-12 airplanes.

An Update of Marketing Student Perceptions of Learning Activities: Structure, Preferences, and Effectiveness

ERIC Educational Resources Information Center

Karns, Gary L.

2005-01-01

Many changes have occurred in the context of marketing education during the past decade, including the increased use of new technology-based and experiential pedagogies. To update the understanding of how students in advanced marketing courses perceive marketing pedagogies in this new context, a replication and extension of Karns's study of…

Preparation of the implementation plan of AASHTO Mechanistic-Empirical Pavement Design Guide (M-EPDG) in Connecticut : Phase II : expanded sensitivity analysis and validation with pavement management data.

DOT National Transportation Integrated Search

2017-02-08

The study re-evaluates distress prediction models using the Mechanistic-Empirical Pavement Design Guide (MEPDG) and expands the sensitivity analysis to a wide range of pavement structures and soils. In addition, an extensive validation analysis of th...

Crib Sheets and Exam Performance in a Data Structures Course

ERIC Educational Resources Information Center

Hamouda, Sally; Shaffer, Clifford A.

2016-01-01

In this paper, we study the relationship between the use of "crib sheets" or "cheat sheets" and performance on in-class exams. Our extensive survey of the existing literature shows that it is not decisive on the questions of when or whether crib sheets actually help students to either perform better on an exam or better learn…

Structure and function of small heat shock/alpha-crystallin proteins: established concepts and emerging ideas.

PubMed

MacRae, T H

2000-06-01

Small heat shock/alpha-crystallin proteins are defined by conserved sequence of approximately 90 amino acid residues, termed the alpha-crystallin domain, which is bounded by variable amino- and carboxy-terminal extensions. These proteins form oligomers, most of uncertain quaternary structure, and oligomerization is prerequisite to their function as molecular chaperones. Sequence modelling and physical analyses show that the secondary structure of small heat shock/alpha-crystallin proteins is predominately beta-pleated sheet. Crystallography, site-directed spin-labelling and yeast two-hybrid selection demonstrate regions of secondary structure within the alpha-crystallin domain that interact during oligomer assembly, a process also dependent on the amino terminus. Oligomers are dynamic, exhibiting subunit exchange and organizational plasticity, perhaps leading to functional diversity. Exposure of hydrophobic residues by structural modification facilitates chaperoning where denaturing proteins in the molten globule state associate with oligomers. The flexible carboxy-terminal extension contributes to chaperone activity by enhancing the solubility of small heat shock/alpha-crystallin proteins. Site-directed mutagenesis has yielded proteins where the effect of the change on structure and function depends upon the residue modified, the organism under study and the analytical techniques used. Most revealing, substitution of a conserved arginine residue within the alpha-crystallin domain has a major impact on quaternary structure and chaperone action probably through realignment of beta-sheets. These mutations are linked to inherited diseases. Oligomer size is regulated by a stress-responsive cascade including MAPKAP kinase 2/3 and p38. Phosphorylation of small heat shock/alpha-crystallin proteins has important consequences within stressed cells, especially for microfilaments.

Babinet to the half: coupling of solid and inverse plasmonic structures.

PubMed

Hentschel, Mario; Weiss, Thomas; Bagheri, Shahin; Giessen, Harald

2013-09-11

We study the coupling between the plasmonic resonances of solid and inverse metallic nanostructures. While the coupling between solid-solid and inverse-inverse plasmonic structures is well-understood, mixed solid-inverse systems have not yet been studied in detail. In particular, it remains unclear whether or not an efficient coupling is even possible and which prerequisites have to be met. We find that an efficient coupling between inverse and solid resonances is indeed possible, identify the necessary geometrical prerequisites, and demonstrate a novel solid-inverse plasmonic electromagnetically induced transparency (EIT) structure as well as a mixed chiral system. We furthermore show that for the coupling of asymmetric rod-shaped inverse and solid structures symmetry breaking is crucial. In contrast, highly symmetric structures such as nanodisks and nanoholes are straightforward to couple. Our results constitute a significant extension of the plasmonic coupling toolkit, and we thus envision the emergence of a large number of intriguing novel plasmonic coupling phenomena in mixed solid-inverse structures.

Waves associated to COMPLEX EVENTS observed by STEREO

NASA Astrophysics Data System (ADS)

Siu Tapia, A. L.; Blanco-Cano, X.; Kajdic, P.; Aguilar-Rodriguez, E.; Russell, C. T.; Jian, L. K.; Luhmann, J. G.

2012-12-01

Complex Events are formed by two or more large-scale solar wind structures which interact in space. Typical cases are interactions of: (i) a Magnetic Cloud/Interplanetary Coronal Mass Ejection (MC/ICME) with another MC/ICME transient; and (ii) an ICME followed by a Stream Interaction Region (SIR). Complex Events are of importance for space weather studies and studying them can enhance our understanding of collisionless plasma physics. Some of these structures can produce or enhance southward magnetic fields, a key factor in geomagnetic storm generation. Using data from the STEREO mission during the years 2006-2011, we found 17 Complex Events preceded by a shock wave. We use magnetic field and plasma data to study the micro-scale structure of the shocks, and the waves associated to these shocks and within Complex Events structures. To determine wave characteristics we perform Power Spectra and Minimum Variance Analysis. We also use PLASTIC WAP protons data to study foreshock extensions and the relationship between Complex Regions and particle acceleration to suprathermal energies.

Silk Self-Assembly Mechanisms and Control-From Thermodynamics to Kinetics

PubMed Central

Lu, Qiang; Zhu, Hesun; Zhang, Cencen; Zhang, Feng; Zhang, Bing; Kaplan, David L.

2012-01-01

Silkworms and spiders generate fibres that exhibit high strength and extensibility. The underlying mechanisms involved in processing silk proteins into fiber form remain incompletely understood, resulting in the failure to fully recapitulate the remarkable properties of native fibers in vitro from regenerated silk solutions. In the present study, the extensibility and high strength of regenerated silks were achieved by mimicking the natural spinning process. Conformational transitions inside micelles, followed by aggregation of micelles and their stabilization as they relate to the metastable structure of silk are described. Subsequently, the mechanisms to control the formation of nanofibrous structures were elucidated. The results clarify that the self-assembly of silk in aqueous solution is a thermodynamically driven process where kinetics also play a key role. Four key factors, molecular mobility, charge, hydrophilic interactions and concentration underlie the process. Adjusting these factors can balance nanostructure and conformational composition, and be used to achieve silk-based materials with properties comparable to native fibers. These mechanisms suggest new directions to design silk-based multifunctional materials. PMID:22320432

Functional morphology of the female reproductive system of a crab with highly extensible seminal receptacles and extreme sperm storage capacity.

PubMed

Farias, Nahuel E; Spivak, Eduardo D; Luppi, Tomas A

2017-07-01

We studied the functional morphology of the female reproductive system of the purple stone crab Danielethus crenulatus. The most remarkable feature is the relative storage capacity and extensibility of the seminal receptacles. These receptacles are a pair of simple sacs that lack internal structures dividing the internal lumen. Differences in seminal receptacle size and contents are accompanied by conspicuous changes in receptacle lining at a tissue level. Full seminal receptacles contain discrete sperm masses formed by hardened fluid and densely packed spermatophores. Different sperm masses are likely from different mates and their stratified disposition within the seminal receptacles is compatible with rival sperm displacement and last sperm precedence. Additionally, the anatomical structure of the vulva and vagina suggest active female control over copula. We discuss our results in the general context of sperm storage in brachyurans and the implications for the mating system of this species. © 2017 Wiley Periodicals, Inc.

An extensive photometric catalogue of CALIFA galaxies

NASA Astrophysics Data System (ADS)

Gilhuly, Colleen; Courteau, Stéphane

2018-06-01

We present an extensive compendium of photometrically determined structural properties for all Calar Alto Legacy Integral Field spectroscopy Area (CALIFA) galaxies in the third data release (DR3). We exploit Sloan Digital Sky Survey (SDSS) images in order to extract one-dimensional (1D) gri surface brightness profiles for all CALIFA DR3 galaxies. We also derive a variety of non-parametric quantities and parametric models fitted to 1D i-band profiles. The galaxy images are decomposed using the 2D bulge-disc decomposition programs IMFIT and GALFIT. The relative performance and merit of our 1D and 2D modelling approaches are assessed. Where possible, we compare and augment our photometry with existing measurements from the literature. Close agreement is generally found with the studies of Walcher et al. and Méndez-Abreu et al., though some significant differences exist. Various structural metrics are also highlighted on account of their tight dispersion against an independent variable, such as the circular velocity.

Mechanical Properties of Single Collagen Fibrils Revealed by Force Spectroscopy

NASA Astrophysics Data System (ADS)

Graham, John; Phillips, Charlotte; Grandbois, Michel

2004-03-01

In the field of biomechanics, collagen fibrils are believed to be robust mechanical structures characterized by a low extensibility. Until very recently, information on the mechanical properties of collagen fibrils could only be derived from ensemble measurements performed on complete tissues such as bone, skin and tendon. Here we measure force-elongation/relaxation profiles of single collagen fibrils using atomic force microscopy-based force spectroscopy. The elongation profiles indicate that in vitro assembled heterotrimeric type I collagen fibrils are characterized by a large extensibility. Numerous discontinuities and a plateau in the force profile indicate major reorganization occurs within the fibrils in the 1.5 -- 4.5 nN range. Our study demonstrates that newly assembled collagen fibrils are robust structures with a significant reserve of elasticity that could play a determinant role in cellular motion in the context of tissue growth and morphogenesis. In contrast, homotrimeric collagen fibrils corresponding to osteogenesis imperfecta pathology exhibit a marked difference in their elasticity profile.

Generation of three-dimensional body-fitted grids by solving hyperbolic partial differential equations

NASA Technical Reports Server (NTRS)

Steger, Joseph L.

1989-01-01

Hyperbolic grid generation procedures are described which have been used in external flow simulations about complex configurations. For many practical applications a single well-ordered (i.e., structured) grid can be used to mesh an entire configuration, in other problems, composite or unstructured grid procedures are needed. Although the hyperbolic partial differential equation grid generation procedure has mainly been utilized to generate structured grids, an extension of the procedure to semiunstructured grids is briefly described. Extensions of the methodology are also described using two-dimensional equations.

Generation of three-dimensional body-fitted grids by solving hyperbolic and parabolic partial differential equations

NASA Technical Reports Server (NTRS)

Steger, Joseph L.

1989-01-01

Hyperbolic grid generation procedures are described which have been used in external flow simulations about complex configurations. For many practical applications a single well-ordered (i.e., structured) grid can be used to mesh an entire configuration, in other problems, composite or unstructured grid procedures are needed. Although the hyperbolic partial differential equation grid generation procedure has mainly been utilized to generate structured grids, extension of the procedure to semiunstructured grids is briefly described. Extensions of the methodology are also described using two-dimensional equations.

Recent development in modeling and analysis of functionally graded materials and structures

NASA Astrophysics Data System (ADS)

Gupta, Ankit; Talha, Mohammad

2015-11-01

In this article, an extensive review related to the structural response of the functionally graded materials (FGMs) and structures have been presented. These are high technology materials developed by a group scientist in the late 1980's in Japan. The emphasis has been made here, to present the structural characteristics of FGMs plates/shells under thermo-electro-mechanical loadings under various boundary and environmental conditions. This paper also provides an overview of different fabrication procedures and the future research directions which is required to implement these materials in the design and analysis appropriately. The expected outcome of present review can be treated as milestone for future studies in the area of high technology materials and structures, and would be definitely advantageous for the researchers, scientists, and designers working in this field.

TRAX-CHEM: A pre-chemical and chemical stage extension of the particle track structure code TRAX in water targets

NASA Astrophysics Data System (ADS)

Boscolo, D.; Krämer, M.; Durante, M.; Fuss, M. C.; Scifoni, E.

2018-04-01

The production, diffusion, and interaction of particle beam induced water-derived radicals is studied with the a pre-chemical and chemical module of the Monte Carlo particle track structure code TRAX, based on a step by step approach. After a description of the model implemented, the chemical evolution of the most important products of water radiolysis is studied for electron, proton, helium, and carbon ion radiation at different energies. The validity of the model is verified by comparing the calculated time and LET dependent yield with experimental data from literature and other simulation approaches.

A molecular modeling approach to understand the structure and conformation relationship of (GlcpA)Xylan.

PubMed

Guo, Qingbin; Kang, Ji; Wu, Yan; Cui, Steve W; Hu, Xinzhong; Yada, Rickey Y

2015-12-10

The structure and conformation relationships of a heteropolysaccharide (GlcpA)Xylan in terms of various molecular weights, Xylp/GlcpA ratio and the distribution of GlcpA along xylan chain were investigated using computer modeling. The adiabatic contour maps of xylobiose, XylpXylp(GlcpA) and (GlcpA)XylpXylp(GlcpA) indicated that the insertion of the side group (GlcpA) influenced the accessible conformational space of xylobiose molecule. RIS-Metropolis Monte Carlo method indicated that insertion of GlcpA side chain induced a lowering effect of the calculated chain extension at low GlcpA:Xylp ratio (GlcpA:Xylp = 1:3). The chain, however, became extended when the ratio of GlcpA:Xylp above 2/3. It was also shown that the spatial extension of the polymer chains was dependent on the distribution of side chain: the random distribution demonstrated the most flexible structure compared to block and alternative distribution. The present studies provide a unique insight into the dependence of both side chain ratio and distribution on the stiffness and flexibility of various (GlcpA)Xylan molecules. Copyright © 2015. Published by Elsevier Ltd.

Organizational Design within University Extension Units: Some Concepts, Options, and Guidelines

ERIC Educational Resources Information Center

Baker, Harold R.

1976-01-01

Drawing on the behavioral sciences, the author outlines alternative modes of structuring and organizing an extension unit. The advantages and disadvantages of several organizational design options, the purposes and management of the temporary task force, and some general guidelines for making organizational design decisions are discussed.…

The other prey-capture silk: Fibres made by glow-worms (Diptera: Keroplatidae) comprise cross-β-sheet crystallites in an abundant amorphous fraction.

PubMed

Walker, Andrew A; Weisman, Sarah; Trueman, Holly E; Merritt, David J; Sutherland, Tara D

2015-09-01

Glow-worms (larvae of dipteran genus Arachnocampa) are restricted to moist habitats where they capture flying prey using snares composed of highly extensible silk fibres and sticky mucus droplets. Little is known about the composition or structure of glow-worm snares, or the extent of possible convergence between glow-worm and arachnid capture silks. We characterised Arachnocampa richardsae silk and mucus using X-ray scattering, Fourier transform infrared spectroscopy and amino acid analysis. Silk but not mucus contained crystallites of the cross-β-sheet type, which occur in unrelated insect silks but have not been reported previously in fibres used for prey capture. Mucus proteins were rich in Gly (28.5%) and existed in predominantly a random coil structure, typical of many adhesive proteins. In contrast, the silk fibres were unusually rich in charged and polar residues, particularly Lys (18.1%), which we propose is related to their use in a highly hydrated state. Comparison of X-ray scattering, infrared spectroscopy and amino acid analysis data suggests that silk fibres contain a high fraction of disordered protein. We suggest that in the native hydrated state, silk fibres are capable of extension via deformation of both disordered regions and cross-β-sheet crystallites, and that high extensibility is an adaptation promoting successful prey capture. This study illustrates the rich variety of protein motifs that are available for recruitment into biopolymers, and how convergently evolved materials can nevertheless be based on fundamentally different protein structures. Crown Copyright © 2015. Published by Elsevier Inc. All rights reserved.

Powder diffraction and crystal structure prediction identify four new coumarin polymorphs

DOE Office of Scientific and Technical Information (OSTI.GOV)

Shtukenberg, Alexander G.; Zhu, Qiang; Carter, Damien J.

Coumarin, a simple, commodity chemical isolated from beans in 1820, has, to date, only yielded one solid state structure. Here, we report a rich polymorphism of coumarin grown from the melt. Four new metastable forms were identified and their crystal structures were solved using a combination of computational crystal structure prediction algorithms and X-ray powder diffraction. With five crystal structures, coumarin has become one of the few rigid molecules showing extensive polymorphism at ambient conditions. We demonstrate the crucial role of advanced electronic structure calculations including many-body dispersion effects for accurate ranking of the stability of coumarin polymorphs and themore » need to account for anharmonic vibrational contributions to their free energy. As such, coumarin is a model system for studying weak intermolecular interactions, crystallization mechanisms, and kinetic effects.« less

Betavoltaic Battery Conversion Efficiency Improvement Based on Interlayer Structures

NASA Astrophysics Data System (ADS)

Li, Da-Rang; Jiang, Lan; Yin, Jian-Hua; Tan, Yuan-Yuan; Lin, Nai

2012-07-01

Significant differences among the doping densities of PN junctions in semiconductors cause lattice mismatch and lattice defects that increase the recombination current of betavoltaic batteries. This extensively decreases the open circuit voltage and the short current, which results in low conversion efficiency. This study proposes P+PINN+-structure based betavoltaic batteries by adding an interlayer to typical PIN structures to improve conversion efficiency. Numerical simulations are conducted for the energy deposition of beta particles along the thickness direction in semiconductors. Based on this, 63Ni-radiation GaAs batteries with PIN and P+PINN+ structures are designed and fabricated to experimentally verify the proposed design. It turns out that the conversion efficiency of the betavoltaic battery with the proposed P+PINN+ structure is about 1.45 times higher than that with the traditional PIN structure.

Powder diffraction and crystal structure prediction identify four new coumarin polymorphs

DOE PAGES

Shtukenberg, Alexander G.; Zhu, Qiang; Carter, Damien J.; ...

2017-05-15

Coumarin, a simple, commodity chemical isolated from beans in 1820, has, to date, only yielded one solid state structure. Here, we report a rich polymorphism of coumarin grown from the melt. Four new metastable forms were identified and their crystal structures were solved using a combination of computational crystal structure prediction algorithms and X-ray powder diffraction. With five crystal structures, coumarin has become one of the few rigid molecules showing extensive polymorphism at ambient conditions. We demonstrate the crucial role of advanced electronic structure calculations including many-body dispersion effects for accurate ranking of the stability of coumarin polymorphs and themore » need to account for anharmonic vibrational contributions to their free energy. As such, coumarin is a model system for studying weak intermolecular interactions, crystallization mechanisms, and kinetic effects.« less

On the structure of existence regions for sinks of the Hénon map

DOE Office of Scientific and Technical Information (OSTI.GOV)

Galias, Zbigniew, E-mail: galias@agh.edu.pl; Tucker, Warwick, E-mail: warwick@math.uu.se

2014-03-15

An extensive search for stable periodic orbits (sinks) for the Hénon map in a small neighborhood of the classical parameter values is carried out. Several parameter values which generate a sink are found and verified by rigorous numerical computations. Each found parameter value is extended to a larger region of existence using a simplex continuation method. The structure of these regions of existence is investigated. This study shows that for the Hénon map, there exist sinks close to the classical case.

General structure of democratic mass matrix of quark sector in E{sub 6} model

DOE Office of Scientific and Technical Information (OSTI.GOV)

Ciftci, R., E-mail: rciftci@cern.ch; Çiftci, A. K., E-mail: abbas.kenan.ciftci@cern.ch

2016-03-25

An extension of the Standard Model (SM) fermion sector, which is inspired by the E{sub 6} Grand Unified Theory (GUT) model, might be a good candidate to explain a number of unanswered questions in SM. Existence of the isosinglet quarks might explain great mass difference of bottom and top quarks. Also, democracy on mass matrix elements is a natural approach in SM. In this study, we have given general structure of Democratic Mass Matrix (DMM) of quark sector in E6 model.

Electronic structure and optical properties of triangular GaAs/AlGaAs quantum dots: Exciton and impurity states

NASA Astrophysics Data System (ADS)

Tiutiunnyk, A.; Akimov, V.; Tulupenko, V.; Mora-Ramos, M. E.; Kasapoglu, E.; Ungan, F.; Sökmen, I.; Morales, A. L.; Duque, C. A.

2016-03-01

Electronic structure and optical properties in equilateral triangular GaAs/Al0.3Ga0.7As quantum dots are studied extensively. The effects of donor and acceptor impurity atoms positioned in the orthocenter of the triangle, as well as of the external DC electric field are taken into account. Binding energies of the impurity, exciton energies, interband photoluminescence peak positions as well as linear and non-linear optical properties in THz range caused by transitions between excitonic states are calculated and discussed.

Fatigue reassessment for lifetime extension of offshore wind monopile substructures

NASA Astrophysics Data System (ADS)

Ziegler, Lisa; Muskulus, Michael

2016-09-01

Fatigue reassessment is required to decide about lifetime extension of aging offshore wind farms. This paper presents a methodology to identify important parameters to monitor during the operational phase of offshore wind turbines. An elementary effects method is applied to analyze the global sensitivity of residual fatigue lifetimes to environmental, structural and operational parameters. Therefore, renewed lifetime simulations are performed for a case study which consists of a 5 MW turbine with monopile substructure in 20 m water depth. Results show that corrosion, turbine availability, and turbulence intensity are the most influential parameters. This can vary strongly for other settings (water depth, turbine size, etc.) making case-specific assessments necessary.

A three-component model of future time perspective across adulthood.

PubMed

Rohr, Margund K; John, Dennis T; Fung, Helene H; Lang, Frieder R

2017-11-01

Although extensive findings underscore the relevance of future time perspective (FTP) in the process of aging, the assumption of FTP as a unifactorial construct has been challenged. The present study explores the factorial structure of the FTP scale (Carstensen & Lang, 1996) as one of the most widely used measures (Ntotal = 2,170). Results support that FTP reflects a higher-order construct that consists of 3 interrelated components-Opportunity, Extension, and Constraint. It is suggested that the flexible usage of the FTP scale as an all compassing 10-item measure or with focus on specific components depends on the concrete research question. (PsycINFO Database Record (c) 2017 APA, all rights reserved).

Form and function in gene regulatory networks: the structure of network motifs determines fundamental properties of their dynamical state space.

PubMed

Ahnert, S E; Fink, T M A

2016-07-01

Network motifs have been studied extensively over the past decade, and certain motifs, such as the feed-forward loop, play an important role in regulatory networks. Recent studies have used Boolean network motifs to explore the link between form and function in gene regulatory networks and have found that the structure of a motif does not strongly determine its function, if this is defined in terms of the gene expression patterns the motif can produce. Here, we offer a different, higher-level definition of the 'function' of a motif, in terms of two fundamental properties of its dynamical state space as a Boolean network. One is the basin entropy, which is a complexity measure of the dynamics of Boolean networks. The other is the diversity of cyclic attractor lengths that a given motif can produce. Using these two measures, we examine all 104 topologically distinct three-node motifs and show that the structural properties of a motif, such as the presence of feedback loops and feed-forward loops, predict fundamental characteristics of its dynamical state space, which in turn determine aspects of its functional versatility. We also show that these higher-level properties have a direct bearing on real regulatory networks, as both basin entropy and cycle length diversity show a close correspondence with the prevalence, in neural and genetic regulatory networks, of the 13 connected motifs without self-interactions that have been studied extensively in the literature. © 2016 The Authors.

Extensive Copy Number Variations in Admixed Indian Population of African Ancestry: Potential Involvement in Adaptation

PubMed Central

Dash, Debasis; Mukerji, Mitali

2014-01-01

Admixture mapping has been enormously resourceful in identifying genetic variations linked to phenotypes, adaptation, and diseases. In this study through analysis of copy number variable regions (CNVRs), we report extensive restructuring in the genomes of the recently admixed African-Indian population (OG-W-IP) that inhabits a highly saline environment in Western India. The study included subjects from OG-W-IP (OG), five different Indian and three HapMap populations that were genotyped using Affymetrix version 6.0 arrays. Copy number variations (CNVs) detected using Birdsuite were used to define CNVRs. Population structure with respect to CNVRs was delineated using random forest approach. OG genomes have a surprising excess of CNVs in comparison to other studied populations. Individual ancestry proportions computed using STRUCTURE also reveals a unique genetic component in OGs. Population structure analysis with CNV genotypes indicates OG to be distant from both the African and Indian ancestral populations. Interestingly, it shows genetic proximity with respect to CNVs to only one Indian population IE-W-LP4, which also happens to reside in the same geographical region. We also observe a significant enrichment of molecular processes related to ion binding and receptor activity in genes encompassing OG-specific CNVRs. Our results suggest that retention of CNVRs from ancestral natives and de novo acquisition of CNVRs could accelerate the process of adaptation especially in an extreme environment. Additionally, this population would be enormously useful for dissecting genes and delineating the involvement of CNVs in salt adaptation. PMID:25398783

Durable and mass producible polymer surface structures with different combinations of micro-micro hierarchy

NASA Astrophysics Data System (ADS)

Jiang, Yu; Suvanto, Mika; Pakkanen, Tapani A.

2016-01-01

Extensive studies have been performed with the aim of fabricating hierarchical surface structures inspired by nature. However, synthetic hierarchical structures have to sacrifice mechanical resistance to functionality by introducing finer scaled structures. Therefore, surfaces are less durable. Surface micro-micro hierarchy has been proven to be effective in replacing micro-nano hierarchy in the sense of superhydrophobicity. However, less attention has been paid to the combined micro-micro hierarchies with surface pillars and pits incorporated together. The fabrication of this type of hierarchy may be less straightforward, with the possibility of being a complicated multi-step process. In this study, we present a simple yet mass producible fabrication method for hierarchical structures with different combinations of surface pillars and pits. The fabrication was based on only one aluminum (Al) mold with sequential mountings. The fabricated structures exhibit high mechanical durability and structural stabilities with a normal load up to 100 kg. In addition, the theoretical estimation of the wetting state shows a promising way of stabilizing a water droplet on the surface pit structures with a more stable Cassie-Baxter state.

Thermo-Mechanical Behavior of Textile Heating Fabric Based on Silver Coated Polymeric Yarn

PubMed Central

Hamdani, Syed Talha Ali; Potluri, Prasad; Fernando, Anura

2013-01-01

This paper presents a study conducted on the thermo-mechanical properties of knitted structures, the methods of manufacture, effect of contact pressure at the structural binding points, on the degree of heating. The test results also present the level of heating produced as a function of the separation between the supply terminals. The study further investigates the rate of heating and cooling of the knitted structures. The work also presents the decay of heating properties of the yarn due to overheating. Thermal images were taken to study the heat distribution over the surface of the knitted fabric. A tensile tester having constant rate of extension was used to stretch the fabric. The behavior of temperature profile of stretched fabric was observed. A comparison of heat generation by plain, rib and interlock structures was studied. It was observed from the series of experiments that there is a minimum threshold force of contact at binding points of a knitted structure is required to pass the electricity. Once this force is achieved, stretching the fabric does not affect the amount of heat produced. PMID:28809358

The extending lithosphere (Arthur Holmes Medal Lecture)

NASA Astrophysics Data System (ADS)

Brun, Jean-Pierre

2017-04-01

Extension of the lithosphere gives birth to a wide range of structures, with characteristic widths between 10 and 1000 km, which includes continental rifts, passive margins, oceanic rifts, core complexes, or back-arc basins. Because the rheology of rocks strongly depends on temperature, this variety of extensional structures falls in two broad categories of extending lithospheres according to the initial Moho temperature TM. "Cold extending systems", with TM < 750°C and mantle-dominated strength, lead to narrow rifts and, if extension is maintained long enough, to passive margins and then mantle core complexes. "Hot extending systems", with TM > 750°C and crustal-dominated strength, lead, depending on strain rate, to either wide rifts or metamorphic core complexes. A much less quoted product of extension is the exhumation of high-pressure (HP ) metamorphic rocks occurring in domains of back-arc extension driven by slab rollback (e.g. Aegean; Appennines-Calabrian) or when the subduction upper plate undergoes extension for plate kinematics reasons (e.g. Norwegian Caledonides; Papua New Guinea). In these tectonic environments, well-documented pressure-temperature-time (P - T - t) paths of HP rocks show a two-stage retrogression path whose the first part corresponds to an isothermal large pressure drop ΔP proportional to the maximum pressure Pmax recorded by the rocks. This linear relation between ΔP and Pmax, which likely results from a stress switch between compression and extension at the onset of exhumation, is in fact observed in all HP metamorphism provinces worldwide, suggesting that the exhumation of HP rocks in extension is a general process rather than an uncommon case. In summary, the modes and products of extension are so diverse that, taken all together, they constitute a very versatile natural laboratory to decipher the rheological complexities of the continental lithosphere and their mechanical implications.

Chapter 4:Grading and properties of hardwood structural lumber

Treesearch

David W. Green

2005-01-01

Structural lumber markets have traditionally been dominated by softwood species. Historically, however, hardwood species have been extensively used for certain structural products such as timbers for railway and highway bridges, railway ties, mine timbers, and for pallets and containers. In the 1920s, when uniform procedures were first developed for structural grading...

From SHAPE Signatures to 3-D Structures | Center for Cancer Research

Cancer.gov

RNAs undergo extensive folding to form sophisticated based-paired secondary structures that are, in part, indicators of more complex three-dimensional structures.  These 3-D shapes are an integral part of the cellular gene-expression machinery. Deconstructing these structures is no small matter, yet it is critical to understanding their function.

The influence of polarity of additive molecules on micelle structures of polystyrene-block-poly(4-vinylpyridine) in the fabrication of nano-porous templates.

PubMed

Chua, Kee Sze; Koh, Ai Peng; Lam, Yeng Ming

2010-11-01

Block copolymers are useful for in situ synthesis of nanoparticles as well as producing nanoporous templates. As such, the effects of precursors on the block copolymer micelle structure is important. In this study, we investigate the effects of polarity of molecules introduced into block copolymer micelle cores on the micelle structure. The molecular dipole moment of the additive molecules has been evaluated and their effects on the block copolymer micelles investigated using light scattering spectroscopy, small-angle X-ray scattering, transmission electron microscopy and atomic force microscopy. The molecule with the largest dipole moment resulted in spherical structures with a polydispersity of less than 0.06 in a fully translational diffusion system. Surprisingly, the less polar additive molecules produced elongated micelles and the aspect ratio increases with decreasing polarity. The change in structure from spherical to elongated structure was attributed to P4VP chain extension, where compounds with polarity most similar to P4VP induce the most chain extension. The second virial coefficients of the solutions with elongated micelles are lower than that for spherical micelle systems by up to one order in magnitude, indicating a strong tendency for micelles to coalesce. On rinsing the spin-cast films, pores were obtained from spherical micelles and ridges from elongated micelles, suggesting a viable alternative for morphology modification using mild conditions where external annealing treatments to the film are not preferred. The knowledge of polarity effects of additive molecules on micelle structure has wider implications for supramolecular block copolymer systems where, depending on the application requirements, changes to the shape of the micelle structure can be induced or avoided. Copyright 2010 Elsevier Inc. All rights reserved.

Structural analysis of secretory phospholipase A2 from Clonorchis sinensis: therapeutic implications for hepatic fibrosis.

PubMed

Hariprasad, Gururao; Kaur, Punit; Srinivasan, Alagiri; Singh, Tej Pal; Kumar, Manoj

2012-07-01

Hepatic fibrosis is a common complication of the infection by the parasite, Clonorchis sinensis. There is a high incidence of this disease in the Asian countries with an increased risk of conversion to cancer. A secretory phospholipase A(2) (PLA(2)) enzyme from the parasite is implicated in the pathology. This is an attractive drug target in the light of extensive structural characterization of this class of enzyme. In this study, the structure of the enzyme was modeled based on its sequence homology to the group III bee venom PLA(2). On analysis, the overall structure essentially is comprised of three helices, two sets of β-wings and an elongated C-terminal extension. The structure is stabilized by four disulfide bonds. The structure is comprised of a calcium binding loop, active site and a substrate binding hydrophobic channel. The active site of the enzyme shows the classical features of PLA(2) with the participation of the three residues: histidine-aspartic acid-tyrosine in hydrogen bond formation. This is an interesting variation from the house keeping group III PLA(2) enzyme of human which has a histidine-aspartic acid and phenylalanine arrangement at the active site. This difference is therefore an important structural parameter that can be exploited to design specific inhibitor molecules against the pathogen PLA(2). Likewise, there are certain unique structural features in the hydrophobic channel and the putative membrane binding surface of the PLA(2) from Clonorchis sinensis that not only help understand the mechanism of action but also provide knowledge for a targeted therapy of liver fibrosis caused by the parasite.

The design of low cost structures for extensive ground arrays

NASA Technical Reports Server (NTRS)

Franklin, H. A.; Leonard, R. S.

1980-01-01

The development of conceptual designs of solar array support structures and their foundations including considerations of the use of concrete, steel, aluminum, or timber are reported. Some cost trends were examined by varying selected parameters to determine optimum configurations. Detailed civil/structural design criteria were developed. Using these criteria, eight detailed designs for support structures and foundations were developed and cost estimates were made. As a result of the study wind was identified as the major loading experienced by these low height structures, whose arrays are likely to extend over large tracts of land. Proper wind load estimating is considered essential to developing realistic structural designs and achieving minimum cost support structures. Wind tunnel testing of a conceptual array field was undertaken and some of the resulting wind design criteria are presented. The SPS rectenna system designs may be less sensitive to wind load estimates, but consistent design criteria remain important.

The High-Resolution Structure of Activated Opsin Reveals a Conserved Solvent Network in the Transmembrane Region Essential for Activation.

PubMed

Blankenship, Elise; Vahedi-Faridi, Ardeschir; Lodowski, David T

2015-12-01

Rhodopsin, a light-activated G protein coupled receptor (GPCR), has been the subject of numerous biochemical and structural investigations, serving as a model receptor for GPCRs and their activation. We present the 2.3-Å resolution structure of native source rhodopsin stabilized in a conformation competent for G protein binding. An extensive water-mediated hydrogen bond network linking the chromophore binding site to the site of G protein binding is observed, providing connections to conserved motifs essential for GPCR activation. Comparison of this extensive solvent-mediated hydrogen-bonding network with the positions of ordered solvent in earlier crystallographic structures of rhodopsin photointermediates reveals both static structural and dynamic functional water-protein interactions present during the activation process. When considered along with observations that solvent occupies similar positions in the structures of other GPCRs, these analyses strongly support an integral role for this dynamic ordered water network in both rhodopsin and GPCR activation. Copyright © 2015 Elsevier Ltd. All rights reserved.

Infrared Fibers for Use in Space-Based Smart Structures

NASA Technical Reports Server (NTRS)

Tucker, Dennis S.; Nettles, Alan T.; Brantley, Lott W. (Technical Monitor)

2001-01-01

Infrared optical fibers are finding a number of applications including laser surgery, remote sensing, and nuclear radiation resistant links. Utilizing these fibers in space-based structures is another application, which can be exploited. Acoustic and thermal sensing are two areas in which these fibers could be utilized. In particular, fibers could be embedded in IM7/8552 toughened epoxy and incorporated into space structures both external and internal. ZBLAN optical fibers are a candidate, which have been studied extensively over the past 20 years for terrestrial applications. For the past seven years the effects of gravity on the crystallization behavior of ZBLAN optical fiber has been studied. It has been found that ZBLAN crystallization is suppressed in microgravity. This lack of crystallization leads to a fiber with better transmission characteristics than its terrestrial counterpart.

Structural, magnetic and magnetocaloric properties of EuMnO3 perovskite manganite: A comprehensive MCE study

NASA Astrophysics Data System (ADS)

Phebe Kokila, I.; Kanagaraj, M.; Sathish Kumar, P.; Peter, Sebastian C.; Sekar, C.; Annal Therese, Helen

2018-02-01

Pervoskite manganite EuMnO3 synthesized by solid-state route was studied for their structural and magnetocaloric properties. EuMnO3 formed a single phase compound in orthorhombic crystal structure with a space group of Pbnm. The zero field cooling and field cooling magnetic responses exhibit an optimal Neel temperature (TN) of 57 K. A stronger magnetic coupling between the EuMnO3 particles are observed by a delay in reaching TN. The magnetocaloric effect analyzed extensively from the negative entropy (-ΔSm) change of 15.23 JKg-1K-1 for EuMnO3, exhibited a Relative Cooling Power (RCP) of ˜211 JKg-1 at 1.2 T proposing EuMnO3 as a potential magnetic refrigerant.

Electrolytes in a nanometer slab-confinement: Ion-specific structure and solvation forces

NASA Astrophysics Data System (ADS)

Kalcher, Immanuel; Schulz, Julius C. F.; Dzubiella, Joachim

2010-10-01

We study the liquid structure and solvation forces of dense monovalent electrolytes (LiCl, NaCl, CsCl, and NaI) in a nanometer slab-confinement by explicit-water molecular dynamics (MD) simulations, implicit-water Monte Carlo (MC) simulations, and modified Poisson-Boltzmann (PB) theories. In order to consistently coarse-grain and to account for specific hydration effects in the implicit methods, realistic ion-ion and ion-surface pair potentials have been derived from infinite-dilution MD simulations. The electrolyte structure calculated from MC simulations is in good agreement with the corresponding MD simulations, thereby validating the coarse-graining approach. The agreement improves if a realistic, MD-derived dielectric constant is employed, which partially corrects for (water-mediated) many-body effects. Further analysis of the ionic structure and solvation pressure demonstrates that nonlocal extensions to PB (NPB) perform well for a wide parameter range when compared to MC simulations, whereas all local extensions mostly fail. A Barker-Henderson mapping of the ions onto a charged, asymmetric, and nonadditive binary hard-sphere mixture shows that the strength of structural correlations is strongly related to the magnitude and sign of the salt-specific nonadditivity. Furthermore, a grand canonical NPB analysis shows that the Donnan effect is dominated by steric correlations, whereas solvation forces and overcharging effects are mainly governed by ion-surface interactions. However, steric corrections to solvation forces are strongly repulsive for high concentrations and low surface charges, while overcharging can also be triggered by steric interactions in strongly correlated systems. Generally, we find that ion-surface and ion-ion correlations are strongly coupled and that coarse-grained methods should include both, the latter nonlocally and nonadditive (as given by our specific ionic diameters), when studying electrolytes in highly inhomogeneous situations.

Design of a wearable hand exoskeleton for exercising flexion/extension of the fingers.

PubMed

Jo, Inseong; Lee, Jeongsoo; Park, Yeongyu; Bae, Joonbum

2017-07-01

In this paper, design of a wearable hand exoskeleton system for exercising flexion/extension of the fingers, is proposed. The exoskeleton was designed with a simple and wearable structure to aid finger motions in 1 degree of freedom (DOF). A hand grasping experiment by fully-abled people was performed to investigate general hand flexion/extension motions and the polynomial curve of general hand motions was obtained. To customize the hand exoskeleton for the user, the polynomial curve was adjusted to the joint range of motion (ROM) of the user and the optimal design of the exoskeleton structure was obtained using the optimization algorithm. A prototype divided into two parts (one part for the thumb, the other for rest fingers) was actuated by only two linear motors for compact size and light weight.

DOE Office of Scientific and Technical Information (OSTI.GOV)

Shi, Qiurong; Zhu, Chengzhou; Bi, Cuixia

Intermetallic nanocrystals are currently receiving extensive attention due to their well-defined crystal structures, highly ordered atomic distribution and superior structural stability that endow them with optimized catalytic activities, stabilities and high selectivity for use as electrocatalysts for fuel cells.

Resonance assignments for the substrate binding domain of Hsp70 chaperone Ssa1 from Saccharomyces cerevisiae.

PubMed

Hu, Wanhui; Wu, Huiwen; Zhang, Hong; Gong, Weibin; Perrett, Sarah

2015-10-01

Hsp70 chaperone proteins play crucial roles in the cell. Extensive structural and functional studies have been performed for bacterial and mammalian Hsp70s. Ssa1 from Saccharomyces cerevisiae is a member of the Hsp70 family. In vivo and biochemical studies on Ssa1 have revealed that it regulates prion propagation and the cell cycle. However, no structural data has been obtained for Ssa1 up to now. Here we report the almost complete (96 %) (1)H, (13)C, (15)N backbone and side chain NMR assignment of the 18.8 kDa Ssa1 substrate binding domain. The construct includes residues 382-554, which corresponds to the entire substrate binding domain and two following α-helices in homologous structures. The secondary structure predicted from the assigned chemical shifts is consistent with that of homologous Hsp70 substrate binding domains.

An ensemble of structures of Burkholderia pseudomallei 2,3-bisphosphoglycerate-dependent phosphoglycerate mutase

DOE Office of Scientific and Technical Information (OSTI.GOV)

Davies, Douglas R.; Staker, Bart L.; Abendroth, Jan A.

2011-12-07

Burkholderia pseudomallei is a soil-dwelling bacterium endemic to Southeast Asia and Northern Australia. Burkholderia is responsible for melioidosis, a serious infection of the skin. The enzyme 2,3-bisphosphoglycerate-dependent phosphoglycerate mutase (PGAM) catalyzes the interconversion of 3-phosphoglycerate and 2-phosphoglycerate, a key step in the glycolytic pathway. As such it is an extensively studied enzyme and X-ray crystal structures of PGAM enzymes from multiple species have been elucidated. Vanadate is a phosphate mimic that is a powerful tool for studying enzymatic mechanisms in phosphoryl-transfer enzymes such as phosphoglycerate mutase. However, to date no X-ray crystal structures of phosphoglycerate mutase have been solved withmore » vanadate acting as a substrate mimic. Here, two vanadate complexes together with an ensemble of substrate and fragment-bound structures that provide a comprehensive picture of the function of the Burkholderia enzyme are reported.« less

Finite element simulation of adaptive aerospace structures with SMA actuators

NASA Astrophysics Data System (ADS)

Frautschi, Jason; Seelecke, Stefan

2003-07-01

The particular demands of aerospace engineering have spawned many of the developments in the field of adaptive structures. Shape memory alloys are particularly attractive as actuators in these types of structures due to their large strains, high specific work output and potential for structural integration. However, the requisite extensive physical testing has slowed development of potential applications and highlighted the need for a simulation tool for feasibility studies. In this paper we present an implementation of an extended version of the M'ller-Achenbach SMA model into a commercial finite element code suitable for such studies. Interaction between the SMA model and the solution algorithm for the global FE equations is thoroughly investigated with respect to the effect of tolerances and time step size on convergence, computational cost and accuracy. Finally, a simulation of a SMA-actuated flexible trailing edge of an aircraft wing modeled with beam elements is presented.

Structure-Based Design of Inhibitors Targeting PrfA, the Master Virulence Regulator of Listeria monocytogenes.

PubMed

Kulén, Martina; Lindgren, Marie; Hansen, Sabine; Cairns, Andrew G; Grundström, Christin; Begum, Afshan; van der Lingen, Ingeborg; Brännström, Kristoffer; Hall, Michael; Sauer, Uwe H; Johansson, Jörgen; Sauer-Eriksson, A Elisabeth; Almqvist, Fredrik

2018-05-10

Listeria monocytogenes is a bacterial pathogen that controls much of its virulence through the transcriptional regulator PrfA. In this study, we describe structure-guided design and synthesis of a set of PrfA inhibitors based on ring-fused 2-pyridone heterocycles. Our most effective compound decreased virulence factor expression, reduced bacterial uptake into eukaryotic cells, and improved survival of chicken embryos infected with L. monocytogenes compared to previously identified compounds. Crystal structures identified an intraprotein "tunnel" as the main inhibitor binding site (A I ), where the compounds participate in an extensive hydrophobic network that restricts the protein's ability to form functional DNA-binding helix-turn-helix (HTH) motifs. Our studies also revealed a hitherto unsuspected structural plasticity of the HTH motif. In conclusion, we have designed 2-pyridone analogues that function as site-A I selective PrfA inhibitors with potent antivirulence properties.

Mechanisms for accommodation of Miocene extension: Low-angle normal faulting, magmatism, and secondary breakaway faulting in the southern Sacramento Mountains, southeastern California

NASA Astrophysics Data System (ADS)

Campbell-Stone, Erin; John, Barbara E.; Foster, David A.; Geissman, John W.; Livaccari, Richard F.

2000-06-01

The Colorado River extensional corridor (CREC) accommodated up to 100% crustal extension between ˜23 and 12 Ma. The southernmost Sacramento Mountains core complex lies within this region of extreme extension and exposes a footwall of Proterozoic, Mesozoic, and Miocene crystalline rocks as well as Miocene volcanic and sedimentary rocks in the hanging wall to the regionally developed Chemehuevi-Sacramento detachment fault (CSDF) system. New structural, U-Pb-zircon, Ar-Ar, and fission track geochronologic and paleomagnetic studies detail the episodic character of both magmatic and tectonic extension in this region. Extension in this part of the CREC was initiated with tectonic slip along a detachment fault system at a depth between 10 and 15 km. Magmatic extension at these crustal levels began at ˜20-19 Ma and directly account for 5-18 km of extension (10-20% of total extension) in the southern Sacramento Mountains. Three discrete magmatic episodes record rotation of the least principal stress direction, in the horizontal plane, from 55° to 15° over the following ˜3 Myr. The three intrusions bear brittle and semibrittle fabrics and show no crystal-plastic fabric development. The final 3-4 Myr of stretching were dominated by amagmatic or tectonic extension along a detachment fault system, with extension directions rotating back toward 75°. The data are consistent with extremely rapid cooling and uplift of Miocene footwall rocks; the ˜19 Ma Sacram suite was emplaced at a mean pressure of ˜3.0 kbars and uplifted rapidly to a level in the crust where brittle deformation was manifested by movement on the detachment fault at ˜16 Ma. By ˜14 Ma the footwall was exposed at the surface, with detritus shed off and deposited in adjacent hanging wall basins.

Biogenic Calcium Carbonate with Hierarchical Organic-Inorganic Composite Structure Enhancing the Removal of Pb(II) from Wastewater.

PubMed

Zhou, Xueli; Liu, Weizhen; Zhang, Jian; Wu, Can; Ou, Xinwen; Tian, Chen; Lin, Zhang; Dang, Zhi

2017-10-18

Calcium carbonate from geological sources (geo-CaCO 3 , e.g., calcite, aragonite) is used extensively in removing heavy metals from wastewater through replacement reaction. However, geo-CaCO 3 has an intrinsically compact crystalline structure that results in low efficiency in pollutant removal and thus its use may produce enormous sludge. In this work, biogenic calcium carbonate (bio-CaCO 3 ) derived from oyster shells was used to remove Pb(II) from wastewater and found to significantly outperform geo-CaCO 3 (calcite). The thermodynamics study revealed that the maximum adsorption capacity of bio-CaCO 3 for Pb(II) was three times that of geo-CaCO 3 , reaching up to 1667 mg/g. The kinetics study disclosed that the dissolution kinetics and the rate of intraparticle diffusion of bio-CaCO 3 were faster than those of geo-CaCO 3 . Extensive mechanism research through X-ray powder diffraction (XRD), scanning electron microscopy (SEM), N 2 adsorption/desorption test and mercury intrusion porosimetry showed that the hierarchical porous organic-inorganic hybrid structure of bio-CaCO 3 expedited the dissolution of CaCO 3 to provide abundant CO 3 2- active sites and facilitated the permeation and diffusion of Pb(II) into the bulk solid phases. In addition, Fourier transform infrared spectroscopy (FTIR) study, X-ray photoelectron spectroscopy (XPS) analysis, and the examination of Pb(II) removal ability of bio-CaCO 3 after calcination indicated that the organic functional groups of bio-CaCO 3 also facilitated the immobilization of Pb(II) into CaCO 3 particles, although the major contribution was from the hierarchical porous structure of bio-CaCO 3 .

Structure and Function of the First Full-Length Murein Peptide Ligase (Mpl) Cell Wall Recycling Protein

PubMed Central

Das, Debanu; Hervé, Mireille; Feuerhelm, Julie; Farr, Carol L.; Chiu, Hsiu-Ju; Elsliger, Marc-André; Knuth, Mark W.; Klock, Heath E.; Miller, Mitchell D.; Godzik, Adam; Lesley, Scott A.; Deacon, Ashley M.; Mengin-Lecreulx, Dominique; Wilson, Ian A.

2011-01-01

Bacterial cell walls contain peptidoglycan, an essential polymer made by enzymes in the Mur pathway. These proteins are specific to bacteria, which make them targets for drug discovery. MurC, MurD, MurE and MurF catalyze the synthesis of the peptidoglycan precursor UDP-N-acetylmuramoyl-L-alanyl-γ-D-glutamyl-meso-diaminopimelyl-D-alanyl-D-alanine by the sequential addition of amino acids onto UDP-N-acetylmuramic acid (UDP-MurNAc). MurC-F enzymes have been extensively studied by biochemistry and X-ray crystallography. In Gram-negative bacteria, ∼30–60% of the bacterial cell wall is recycled during each generation. Part of this recycling process involves the murein peptide ligase (Mpl), which attaches the breakdown product, the tripeptide L-alanyl-γ-D-glutamyl-meso-diaminopimelate, to UDP-MurNAc. We present the crystal structure at 1.65 Å resolution of a full-length Mpl from the permafrost bacterium Psychrobacter arcticus 273-4 (PaMpl). Although the Mpl structure has similarities to Mur enzymes, it has unique sequence and structure features that are likely related to its role in cell wall recycling, a function that differentiates it from the MurC-F enzymes. We have analyzed the sequence-structure relationships that are unique to Mpl proteins and compared them to MurC-F ligases. We have also characterized the biochemical properties of this enzyme (optimal temperature, pH and magnesium binding profiles and kinetic parameters). Although the structure does not contain any bound substrates, we have identified ∼30 residues that are likely to be important for recognition of the tripeptide and UDP-MurNAc substrates, as well as features that are unique to Psychrobacter Mpl proteins. These results provide the basis for future mutational studies for more extensive function characterization of the Mpl sequence-structure relationships. PMID:21445265

Structure and function of the first full-length murein peptide ligase (Mpl) cell wall recycling protein.

PubMed

Das, Debanu; Hervé, Mireille; Feuerhelm, Julie; Farr, Carol L; Chiu, Hsiu-Ju; Elsliger, Marc-André; Knuth, Mark W; Klock, Heath E; Miller, Mitchell D; Godzik, Adam; Lesley, Scott A; Deacon, Ashley M; Mengin-Lecreulx, Dominique; Wilson, Ian A

2011-03-18

Bacterial cell walls contain peptidoglycan, an essential polymer made by enzymes in the Mur pathway. These proteins are specific to bacteria, which make them targets for drug discovery. MurC, MurD, MurE and MurF catalyze the synthesis of the peptidoglycan precursor UDP-N-acetylmuramoyl-L-alanyl-γ-D-glutamyl-meso-diaminopimelyl-D-alanyl-D-alanine by the sequential addition of amino acids onto UDP-N-acetylmuramic acid (UDP-MurNAc). MurC-F enzymes have been extensively studied by biochemistry and X-ray crystallography. In gram-negative bacteria, ∼30-60% of the bacterial cell wall is recycled during each generation. Part of this recycling process involves the murein peptide ligase (Mpl), which attaches the breakdown product, the tripeptide L-alanyl-γ-D-glutamyl-meso-diaminopimelate, to UDP-MurNAc. We present the crystal structure at 1.65 Å resolution of a full-length Mpl from the permafrost bacterium Psychrobacter arcticus 273-4 (PaMpl). Although the Mpl structure has similarities to Mur enzymes, it has unique sequence and structure features that are likely related to its role in cell wall recycling, a function that differentiates it from the MurC-F enzymes. We have analyzed the sequence-structure relationships that are unique to Mpl proteins and compared them to MurC-F ligases. We have also characterized the biochemical properties of this enzyme (optimal temperature, pH and magnesium binding profiles and kinetic parameters). Although the structure does not contain any bound substrates, we have identified ∼30 residues that are likely to be important for recognition of the tripeptide and UDP-MurNAc substrates, as well as features that are unique to Psychrobacter Mpl proteins. These results provide the basis for future mutational studies for more extensive function characterization of the Mpl sequence-structure relationships.

Optimal contact definition for reconstruction of contact maps.

PubMed

Duarte, Jose M; Sathyapriya, Rajagopal; Stehr, Henning; Filippis, Ioannis; Lappe, Michael

2010-05-27

Contact maps have been extensively used as a simplified representation of protein structures. They capture most important features of a protein's fold, being preferred by a number of researchers for the description and study of protein structures. Inspired by the model's simplicity many groups have dedicated a considerable amount of effort towards contact prediction as a proxy for protein structure prediction. However a contact map's biological interest is subject to the availability of reliable methods for the 3-dimensional reconstruction of the structure. We use an implementation of the well-known distance geometry protocol to build realistic protein 3-dimensional models from contact maps, performing an extensive exploration of many of the parameters involved in the reconstruction process. We try to address the questions: a) to what accuracy does a contact map represent its corresponding 3D structure, b) what is the best contact map representation with regard to reconstructability and c) what is the effect of partial or inaccurate contact information on the 3D structure recovery. Our results suggest that contact maps derived from the application of a distance cutoff of 9 to 11A around the Cbeta atoms constitute the most accurate representation of the 3D structure. The reconstruction process does not provide a single solution to the problem but rather an ensemble of conformations that are within 2A RMSD of the crystal structure and with lower values for the pairwise average ensemble RMSD. Interestingly it is still possible to recover a structure with partial contact information, although wrong contacts can lead to dramatic loss in reconstruction fidelity. Thus contact maps represent a valid approximation to the structures with an accuracy comparable to that of experimental methods. The optimal contact definitions constitute key guidelines for methods based on contact maps such as structure prediction through contacts and structural alignments based on maximum contact map overlap.

Optimal contact definition for reconstruction of Contact Maps

PubMed Central

2010-01-01

Background Contact maps have been extensively used as a simplified representation of protein structures. They capture most important features of a protein's fold, being preferred by a number of researchers for the description and study of protein structures. Inspired by the model's simplicity many groups have dedicated a considerable amount of effort towards contact prediction as a proxy for protein structure prediction. However a contact map's biological interest is subject to the availability of reliable methods for the 3-dimensional reconstruction of the structure. Results We use an implementation of the well-known distance geometry protocol to build realistic protein 3-dimensional models from contact maps, performing an extensive exploration of many of the parameters involved in the reconstruction process. We try to address the questions: a) to what accuracy does a contact map represent its corresponding 3D structure, b) what is the best contact map representation with regard to reconstructability and c) what is the effect of partial or inaccurate contact information on the 3D structure recovery. Our results suggest that contact maps derived from the application of a distance cutoff of 9 to 11Å around the Cβ atoms constitute the most accurate representation of the 3D structure. The reconstruction process does not provide a single solution to the problem but rather an ensemble of conformations that are within 2Å RMSD of the crystal structure and with lower values for the pairwise average ensemble RMSD. Interestingly it is still possible to recover a structure with partial contact information, although wrong contacts can lead to dramatic loss in reconstruction fidelity. Conclusions Thus contact maps represent a valid approximation to the structures with an accuracy comparable to that of experimental methods. The optimal contact definitions constitute key guidelines for methods based on contact maps such as structure prediction through contacts and structural alignments based on maximum contact map overlap. PMID:20507547

Structural strengthening of rocket nozzle extension by means of laser metal deposition

NASA Astrophysics Data System (ADS)

Honoré, M.; Brox, L.; Hallberg, M.

2012-03-01

Commercial space operations strive to maximize the payload per launch in order to minimize the costs of each kg launched into orbit; this yields demand for ever larger launchers with larger, more powerful rocket engines. Volvo Aero Corporation in collaboration with Snecma and Astrium has designed and tested a new, upgraded Nozzle extension for the Vulcain 2 engine configuration, denoted Vulcain 2+ NE Demonstrator The manufacturing process for the welding of the sandwich wall and the stiffening structure is developed in close cooperation with FORCE Technology. The upgrade is intended to be available for future development programs for the European Space Agency's (ESA) highly successful commercial launch vehicle, the ARIANE 5. The Vulcain 2+ Nozzle Extension Demonstrator [1] features a novel, thin-sheet laser-welded configuration, with laser metal deposition built-up 3D-features for the mounting of stiffening structure, flanges and for structural strengthening, in order to cope with the extreme load- and thermal conditions, to which the rocket nozzle extension is exposed during launch of the 750 ton ARIANE 5 launcher. Several millimeters of material thickness has been deposited by laser metal deposition without disturbing the intricate flow geometry of the nozzle cooling channels. The laser metal deposition process has been applied on a full-scale rocket nozzle demonstrator, and in excess of 15 kilometers of filler wire has been successfully applied to the rocket nozzle. The laser metal deposition has proven successful in two full-throttle, full-scale tests, firing the rocket engine and nozzle in the ESA test facility P5 by DLR in Lampoldshausen, Germany.

Star Products with Separation of Variables Admitting a Smooth Extension

NASA Astrophysics Data System (ADS)

Karabegov, Alexander

2012-08-01

Given a complex manifold M with an open dense subset Ω endowed with a pseudo-Kähler form ω which cannot be smoothly extended to a larger open subset, we consider various examples where the corresponding Kähler-Poisson structure and a star product with separation of variables on (Ω, ω) admit smooth extensions to M. We give a simple criterion of the existence of a smooth extension of a star product and apply it to these examples.

New Constraints on Extensional Environments through Analysis of Teleseisms

NASA Astrophysics Data System (ADS)

Eilon, Zachary Cohen

We apply a variety of teleseismic methodologies to investigate the upper mantle structure in extensional environments. Using a body wave dataset collected from a regional deployment in the Woodlark Rift, Papua New Guinea, we image anisotropic velocity structure of a rapidly extending rift on the cusp of continental breakup. In the process, we develop a technique for azimuthal anisotropy tomography that is generally applicable to regions of relatively simple anisotropic structure. The Cascadia Initiative ocean bottom seismometer (OBS) deployment provides coverage of an entire oceanic plate in unprecedented detail; we measure attenuation and velocities of teleseisms to characterize the temperature and melt structure from ridge to trench. Our study of shear wave splitting reveals strong azimuthal anisotropy within the Woodlark Rift with fairly uniform fast directions parallel to extension. This observation differs markedly from other continental rifts and resembles the pattern seen at mid-ocean ridges. This phenomenon is best explained by extension-related strain causing preferential alignment of mantle olivine. We develop a simple relationship that links total extension to predicted splitting, and show that it explains the apparent dichotomy in rifts' anisotropy. Finite frequency tomography using a dataset of teleseismic P- and S-wave differential travel times reveals the upper mantle velocity structure of the Woodlark Rift. A well developed slow rift axis extending >250 km along strike from the adjacent seafloor spreading centers demonstrates the removal of mantle lithosphere prior to complete crustal breakup. We argue that the majority of this rift is melt-poor, in agreement with geochemical results. A large temperature gradient arises from the juxtaposition of upwelled axial asthenosphere with a previously unidentified cold structure north of the rift that hosts well located intermediate depth earthquakes. Localization of upper mantle extension is apparent from the velocity structure of the rift axis and may result from the presence of water following recent subduction. In order to resolve potential tradeoffs between anisotropy and velocity gradients, we develop a novel technique for the joint inversion of Delta VS and strength of azimuthal anisotropy using teleseismic direct S-waves. This approach exploits the natural geometry of the regional tectonics and the relative consistency of observed splits; the imposed orthogonality of anisotropic structure takes care of the non-commutative nature of multi-layer splitting. Our tomographic models reveal the breakup of continental lithosphere in the anisotropy signal, as pre-existing fabric breaks apart and is replaced by upwelling asthenosphere that simultaneously advects and accrues an extension-related fabric. Accounting for anisotropy removes apparent noise in isotropic travel times and clarifies the velocity model. Taken together, our results paint a detailed and consistent picture of a highly extended continental rift. Finally, we collect a dataset of differential travel time (delta T) and attenuation (Deltat*) measurements of P- and S-waves recorded on OBS stations that span the Juan de Fuca and Gorda plates. We observe large gradients in Delta t*, with values as high as 2.0 s for S-waves at the ridge axes. Such high values of differential attenuation are not compatible with a purely thermal control, nor are they consistent with focusing effects. We assert that melt, grainsize, and water enhance anelastic effects beneath the ridge. The combination of attenuation and velocity measurements enables us to place quantitative constraints on the properties of the upper mantle in the vicinity of the spreading axis.

Crack Monitoring Method for an FRP-Strengthened Steel Structure Based on an Antenna Sensor.

PubMed

Liu, Zhiping; Chen, Kai; Li, Zongchen; Jiang, Xiaoli

2017-10-20

Fiber-reinforced polymer (FRP) has been increasingly applied to steel structures for structural strengthening or crack repair, given its high strength-to-weight ratio and high stiffness-to-weight ratio. Cracks in steel structures are the dominant hidden threats to structural safety. However, it is difficult to monitor structural cracks under FRP coverage and there is little related research. In this paper, a crack monitoring method for an FRP-strengthened steel structure deploying a microstrip antenna sensor is presented. A theoretical model of the dual-substrate antenna sensor with FRP is established and the sensitivity of crack monitoring is studied. The effects of the weak conductivity of carbon fiber reinforced polymers (CFRPs) on the performance of crack monitoring are analyzed via contrast experiments. The effects of FRP thickness on the performance of the antenna sensor are studied. The influence of structural strain on crack detection coupling is studied through strain-crack coupling experiments. The results indicate that the antenna sensor can detect cracks in steel structures covered by FRP (including CFRP). FRP thickness affects the antenna sensor's performance significantly, while the effects of strain can be ignored. The results provide a new approach for crack monitoring of FRP-strengthened steel structures with extensive application prospects.

Crack Monitoring Method for an FRP-Strengthened Steel Structure Based on an Antenna Sensor

PubMed Central

Liu, Zhiping; Li, Zongchen

2017-01-01

Fiber-reinforced polymer (FRP) has been increasingly applied to steel structures for structural strengthening or crack repair, given its high strength-to-weight ratio and high stiffness-to-weight ratio. Cracks in steel structures are the dominant hidden threats to structural safety. However, it is difficult to monitor structural cracks under FRP coverage and there is little related research. In this paper, a crack monitoring method for an FRP-strengthened steel structure deploying a microstrip antenna sensor is presented. A theoretical model of the dual-substrate antenna sensor with FRP is established and the sensitivity of crack monitoring is studied. The effects of the weak conductivity of carbon fiber reinforced polymers (CFRPs) on the performance of crack monitoring are analyzed via contrast experiments. The effects of FRP thickness on the performance of the antenna sensor are studied. The influence of structural strain on crack detection coupling is studied through strain–crack coupling experiments. The results indicate that the antenna sensor can detect cracks in steel structures covered by FRP (including CFRP). FRP thickness affects the antenna sensor’s performance significantly, while the effects of strain can be ignored. The results provide a new approach for crack monitoring of FRP-strengthened steel structures with extensive application prospects. PMID:29053614

Tertiary structural propensities reveal fundamental sequence/structure relationships.

PubMed

Zheng, Fan; Zhang, Jian; Grigoryan, Gevorg

2015-05-05

Extracting useful generalizations from the continually growing Protein Data Bank (PDB) is of central importance. We hypothesize that the PDB contains valuable quantitative information on the level of local tertiary structural motifs (TERMs). We show that by breaking a protein structure into its constituent TERMs, and querying the PDB to characterize the natural ensemble matching each, we can estimate the compatibility of the structure with a given amino acid sequence through a metric we term "structure score." Considering submissions from recent Critical Assessment of Structure Prediction (CASP) experiments, we found a strong correlation (R = 0.69) between structure score and model accuracy, with poorly predicted regions readily identifiable. This performance exceeds that of leading atomistic statistical energy functions. Furthermore, TERM-based analysis of two prototypical multi-state proteins rapidly produced structural insights fully consistent with prior extensive experimental studies. We thus find that TERM-based analysis should have considerable utility for protein structural biology. Copyright © 2015 Elsevier Ltd. All rights reserved.

Organizational Structures that Support Internal Program Evaluation

ERIC Educational Resources Information Center

Lambur, Michael T.

2008-01-01

This chapter explores how the structure of large complex organizations such as Cooperative Extension affects their ability to support internal evaluation of their programs and activities. Following a literature review of organizational structure and its relation to internal evaluation capacity, the chapter presents the results of interviews with…

The Tsenkher Structure in the Gobi-Altai, Mongolia: Preliminary Results from the 2007 Expedition

NASA Astrophysics Data System (ADS)

Komatsu, G.; Ormö, J.; Bayaraa, T.; Matsui, T.; Gereltsetseg, L.; Tserendug, S.; Goto, K.; Gomez-Ortiz, D.; Demberel, S.

2008-03-01

The 3.6-3.7 km Tsenkher structure located in Mongolia was proposed to be an impact crater. Volcanic hypotheses are not ruled out, but its uplifted rim, extensive breccia deposit, and rootless structure are consistent with an impact origin.

14 CFR Section 03 - Definitions for Purposes of This System of Accounts and Reports

Code of Federal Regulations, 2010 CFR

2010-01-01

... equipment, land, structures, and other tangible property; extensions of fuel, water, and oil distribution equipment; additions to buildings and other structures; and additional safety devices applied to equipment.... Equipment. Tangible property other than land, structures, and improvements. Equity security. Any instrument...

Three-Dimensional Rheological Structure of North China Craton Determined by Integration of Multiple observations: Controlling Role for Lithospheric Rifting

NASA Astrophysics Data System (ADS)

Xiong, X.; Shan, B.; Li, Y.

2017-12-01

The North China Craton (NCC) has undergone significant lithospheric rejuvenation in late Mesozoic and Cenozoic, one feature of which is the widespread extension and rifting. The extension is distinct between the two parts of NCC: widespread rifting in the eastern NCC and localized narrow rifting in the west. The mechanism being responsible for this difference is uncertain and highly debated. Since lithospheric deformation can be regarded as the response of lithosphere to various dynamic actions, the rheological properties of lithosphere must have a fundamental influence on its tectonics and deformation behavior. In this study, we investigated the 3D thermal and rheological structure of NCC by developing a model integrating several geophysical observables (such as surface heatflow, regional elevation, gravity and geoid anomalies, and seismic tomography models). The results exhibit obvious lateral variation in rheological structure between the eastern and western NCC. The overall lithospheric strength is higher in the western NCC than in the east. Despite of such difference in rheology, both parts of NCC are characterized by mantle dominated strength regime, which facilitates the development of narrow rifting. Using ancient heatflow derived from mantle xenoliths studies, and taking the subduction-related dehydration reactions during Mesozoic into account, we constructed the thermal and rheological structure of NCC in Ordovician, early Cretaceous and early Cenozoic. Combining the evidence from numerical simulations, we proposed an evolution path of the rifting in NCC. The lithosphere of NCC in Ordovician was characterized by a normal craton features: low geotherm, high strength and mantle dominated regime. During Jurassic and Cretaceous, the mantle lithosphere in the eastern NCC was hydrated by fluid released by the suduction of the Pacific plate, resulting in weakening of the lithosphere and a transition from mantle dominated to crust dominated regime, which facilitated the development of metamorphic core complex extension. The rifting in eastern NCC experienced a further transition to the wide rifting style under a low strain rate environment during early Cenozoic. In contrast, the western NNC has been kept mantle dominated regime, leading to a localized narrow rifting.

Lithospheric structure of the Rio Grande rift.

PubMed

Wilson, David; Aster, Richard; West, Michael; Ni, James; Grand, Steve; Gao, Wei; Baldridge, W Scott; Semken, Steve; Patel, Paresh

2005-02-24

A high-resolution, regional passive seismic experiment in the Rio Grande rift region of the southwestern United States has produced new images of upper-mantle velocity structure and crust-mantle topography. Synthesizing these results with geochemical and other geophysical evidence reveals highly symmetric lower-crustal and upper-mantle lithosphere extensional deformation, suggesting a pure-shear rifting mechanism for the Rio Grande rift. Extension in the lower crust is distributed over a region four times the width of the rift's surface expression. Here we propose that the laterally distributed, pure shear extension is a combined effect of low strain rate and a regionally elevated geotherm, possibly abetted by pre-existing lithospheric structures, at the time of rift initiation. Distributed extension in the lower crust and mantle has induced less concentrated vertical mantle upwelling and less vigorous small-scale convection than would have arisen from more localized deformation. This lack of highly focused mantle upwelling may explain a deficit of rift-related volcanics in the Rio Grande rift compared to other major rift systems such as the Kenya rift.

Novel structural and regulatory features of rhoptry secretory kinases in Toxoplasma gondii

DOE Office of Scientific and Technical Information (OSTI.GOV)

Qiu, Wei; Wernimont, Amy; Tang, Keliang

2009-09-29

Serine/threonine kinases secreted from rhoptry organelles constitute important virulence factors of Toxoplasma gondii. Rhoptry kinases are highly divergent and their structures and regulatory mechanism are hitherto unknown. Here, we report the X-ray crystal structures of two related pseudokinases named ROP2 and ROP8, which differ primarily in their substrate-binding site. ROP kinases contain a typical bilobate kinase fold and a novel N-terminal extension that both stabilizes the N-lobe and provides a unique means of regulation. Although ROP2 and ROP8 were catalytically inactive, they provided a template for homology modelling of the active kinase ROP18, a major virulence determinant of T. gondii.more » Autophosphorylation of key residues in the N-terminal extension resulted in ROP18 activation, which in turn phosphorylated ROP2 and ROP8. Mutagenesis and mass spectrometry experiments revealed that ROP18 was maximally activated when this phosphorylated N-terminus relieved autoinhibition resulting from extension of aliphatic side chains into the ATP-binding pocket. This novel means of regulation governs ROP kinases implicated in parasite virulence.« less

A Homogenization Approach for Design and Simulation of Blast Resistant Composites

NASA Astrophysics Data System (ADS)

Sheyka, Michael

Structural composites have been used in aerospace and structural engineering due to their high strength to weight ratio. Composite laminates have been successfully and extensively used in blast mitigation. This dissertation examines the use of the homogenization approach to design and simulate blast resistant composites. Three case studies are performed to examine the usefulness of different methods that may be used in designing and optimizing composite plates for blast resistance. The first case study utilizes a single degree of freedom system to simulate the blast and a reliability based approach. The first case study examines homogeneous plates and the optimal stacking sequence and plate thicknesses are determined. The second and third case studies use the homogenization method to calculate the properties of composite unit cell made of two different materials. The methods are integrated with dynamic simulation environments and advanced optimization algorithms. The second case study is 2-D and uses an implicit blast simulation, while the third case study is 3-D and simulates blast using the explicit blast method. Both case studies 2 and 3 rely on multi-objective genetic algorithms for the optimization process. Pareto optimal solutions are determined in case studies 2 and 3. Case study 3 is an integrative method for determining optimal stacking sequence, microstructure and plate thicknesses. The validity of the different methods such as homogenization, reliability, explicit blast modeling and multi-objective genetic algorithms are discussed. Possible extension of the methods to include strain rate effects and parallel computation is also examined.

From Death Metal to R&B? Consistency of Music Preferences among Dutch Adolescents and Young Adults

ERIC Educational Resources Information Center

Mulder, Juul; Ter Bogt, Tom F. M.; Raaijmakers, Quinten A. W.; Gabhainn, Saoirse Nic; Sikkema, Paul

2010-01-01

The structure of music preferences has been investigated extensively. However, development of music preferences in terms of consistency of music taste is as yet understudied. In this study, intra-individual consistency of music taste was assessed among Dutch adolescents and young adults over three points in time in a 21-month period. An…

Influence of Structural Features on Portuguese Toddler Child Care Quality

ERIC Educational Resources Information Center

Pessanha, Manuela; Aguiar, Cecilia; Bairrao, Joaquim

2007-01-01

Whereas child care quality has been extensively studied in the U.S., there is much less information about the quality of child care in other countries. With one of the highest maternal employment rates in Europe, it is important to examine child care in Portugal. Thirty toddler classrooms in child care centers were observed. The purpose of this…

Energy Systems - Present, Future: Extra Terrestrials, Grades 7, 8, 9,/Science.

ERIC Educational Resources Information Center

National Science Teachers Association, Washington, DC.

The 12 lessons presented in this guide are structured so that they may be integrated into science lessons in 7th-, 8th-, or 9th-grades. Suggestions are made for extension of study. Lessons are approached through classroom role-playing of outer space visitors who seek to understand energy conversion principles used on Earth. Major emphasis is…

"Epistemic Chaos": The Recontextualisation of Undergraduate Curriculum Design and Pedagogic Practice in a New University Business School

ERIC Educational Resources Information Center

Brady, Norman

2015-01-01

This paper is based on a qualitative case study of undergraduate curriculum design and pedagogic practice in the new University Business School (UBS). Data were collected using semi-structured interviews with 24 academics from across a range of business sub-disciplines together with an extensive documentary review of materials relating to two…

The distribution of RNA polymerase in Escherichia coli is dynamic and sensitive to environmental cues | Center for Cancer Research

Cancer.gov

Despite extensive genetic, biochemical and structural studies on Escherichia coli RNA polymerase (RNAP), little is known about its location and distribution in response to environmental changes. To visualize the RNAP by fluorescence microscopy in E. coli under different physiological conditions, we constructed a functional rpoC-gfp gene fusion on the chromosome.

Supported metal catalysts for alcohol/sugar alcohol steam reforming

DOE Office of Scientific and Technical Information (OSTI.GOV)

Davidson, Stephen; Zhang, He; Sun, Junming

Despite extensive studies on hydrogen production via steam reforming of alcohols and sugar alcohols, catalysts typically suffer a variety of issues from poor hydrogen selectivity to rapid deactivation. Here, we summarize recent advances in fundamental understanding of functionality and structure of catalysts for alcohol/sugar alcohol steam reforming, and provide perspectives on further development required to design highly efficient steam reforming catalysts.

Derivation of improved load transformation matrices for launchers-spacecraft coupled analysis, and direct computation of margins of safety

NASA Technical Reports Server (NTRS)

Klein, M.; Reynolds, J.; Ricks, E.

1989-01-01

Load and stress recovery from transient dynamic studies are improved upon using an extended acceleration vector in the modal acceleration technique applied to structural analysis. Extension of the normal LTM (load transformation matrices) stress recovery to automatically compute margins of safety is presented with an application to the Hubble space telescope.

Historical harvests reduce neighboring old-growth basal area across a forest landscape

Treesearch

David M. Bell; Thomas A. Spies; Robert Pabst

2017-01-01

While advances in remote sensing have made stand, landscape, and regional assessments of the direct impacts of disturbance on forests quite common, the edge influence of timber harvesting on the structure of neighboring unharvested forests has not been examined extensively. In this study, we examine the impact of historical timber harvests on basal area patterns of...

Social Loafing on Group Projects: Structural Antecedents and Effect on Student Satisfaction

ERIC Educational Resources Information Center

Aggarwal, Praveen; O'Brien, Connie L.

2008-01-01

To respond to the expectations of the industry and business school accreditation bodies, marketing faculty have been making extensive use of group projects in their curricula. A common problem with the use of student groups, however, is that of social loafing. In this study, we identify some easy-to-implement project set-up factors and examine…

Sensitivity of directed networks to the addition and pruning of edges and vertices

NASA Astrophysics Data System (ADS)

Goltsev, A. V.; Timár, G.; Mendes, J. F. F.

2017-08-01

Directed networks have various topologically different extensive components, in contrast to a single giant component in undirected networks. We study the sensitivity (response) of the sizes of these extensive components in directed complex networks to the addition and pruning of edges and vertices. We introduce the susceptibility, which quantifies this sensitivity. We show that topologically different parts of a directed network have different sensitivity to the addition and pruning of edges and vertices and, therefore, they are characterized by different susceptibilities. These susceptibilities diverge at the critical point of the directed percolation transition, signaling the appearance (or disappearance) of the giant strongly connected component in the infinite size limit. We demonstrate this behavior in randomly damaged real and synthetic directed complex networks, such as the World Wide Web, Twitter, the Caenorhabditis elegans neural network, directed Erdős-Rényi graphs, and others. We reveal a nonmonotonic dependence of the sensitivity to random pruning of edges or vertices in the case of C. elegans and Twitter that manifests specific structural peculiarities of these networks. We propose the measurements of the susceptibilities during the addition or pruning of edges and vertices as a new method for studying structural peculiarities of directed networks.

Stopping electric field extension in a modified nanostructure based on SOI technology - A comprehensive numerical study

NASA Astrophysics Data System (ADS)

Anvarifard, Mohammad K.; Orouji, Ali A.

2017-11-01

This article has related a particular knowledge in order to reduce short channel effects (SCEs) in nano-devices based on silicon-on-insulator (SOI) MOSFETs. The device under study has been designed in 22 nm node technology with embedding Si3N4 extra oxide as a stopping layer of electric field and a useful heatsink for transferring generated heat. Two important subjects (DC characteristics and RF characteristics) have been investigated, simultaneously. Stopping electric field extension and enhancement of channel thermal conduction are introduced as an entrance gateway for this work so that improve the electrical characteristics, eventually. The inserted extra oxide made by the Si3N4 material has a vital impact on the modification of the electrical and thermal features in the proposed device. An immense comparison between the proposed SOI and conventional SOI showed that the proposed structure has higher electrical and thermal proficiency than the conventional structure in terms of main parameters such as short channel effects (SCEs), leakage current, floating body effect (FBE), self-heating effect (SHE), voltage gain, ratio of On-current to Off- current, transconductance, output conductance, minimum noise figure and power gain.

Force-Induced Unfolding of Fibronectin in the Extracellular Matrix of Living Cells

PubMed Central

Smith, Michael L; Gourdon, Delphine; Little, William C; Kubow, Kristopher E; Eguiluz, R. Andresen; Luna-Morris, Sheila; Vogel, Viola

2007-01-01

Whether mechanically unfolded fibronectin (Fn) is present within native extracellular matrix fibrils is controversial. Fn extensibility under the influence of cell traction forces has been proposed to originate either from the force-induced lengthening of an initially compact, folded quaternary structure as is found in solution (quaternary structure model, where the dimeric arms of Fn cross each other), or from the force-induced unfolding of type III modules (unfolding model). Clarification of this issue is central to our understanding of the structural arrangement of Fn within fibrils, the mechanism of fibrillogenesis, and whether cryptic sites, which are exposed by partial protein unfolding, can be exposed by cell-derived force. In order to differentiate between these two models, two fluorescence resonance energy transfer schemes to label plasma Fn were applied, with sensitivity to either compact-to-extended conformation (arm separation) without loss of secondary structure or compact-to-unfolded conformation. Fluorescence resonance energy transfer studies revealed that a significant fraction of fibrillar Fn within a three-dimensional human fibroblast matrix is partially unfolded. Complete relaxation of Fn fibrils led to a refolding of Fn. The compactly folded quaternary structure with crossed Fn arms, however, was never detected within extracellular matrix fibrils. We conclude that the resting state of Fn fibrils does not contain Fn molecules with crossed-over arms, and that the several-fold extensibility of Fn fibrils involves the unfolding of type III modules. This could imply that Fn might play a significant role in mechanotransduction processes. PMID:17914904

Fossilized biophotonic nanostructures reveal the original colors of 47-million-year-old moths.

PubMed

McNamara, Maria E; Briggs, Derek E G; Orr, Patrick J; Wedmann, Sonja; Noh, Heeso; Cao, Hui

2011-11-01

Structural colors are generated by scattering of light by variations in tissue nanostructure. They are widespread among animals and have been studied most extensively in butterflies and moths (Lepidoptera), which exhibit the widest diversity of photonic nanostructures, resultant colors, and visual effects of any extant organism. The evolution of structural coloration in lepidopterans, however, is poorly understood. Existing hypotheses based on phylogenetic and/or structural data are controversial and do not incorporate data from fossils. Here we report the first example of structurally colored scales in fossil lepidopterans; specimens are from the 47-million-year-old Messel oil shale (Germany). The preserved colors are generated by a multilayer reflector comprised of a stack of perforated laminae in the scale lumen; differently colored scales differ in their ultrastructure. The original colors were altered during fossilization but are reconstructed based upon preserved ultrastructural detail. The dorsal surface of the forewings was a yellow-green color that probably served as a dual-purpose defensive signal, i.e. aposematic during feeding and cryptic at rest. This visual signal was enhanced by suppression of iridescence (change in hue with viewing angle) achieved via two separate optical mechanisms: extensive perforation, and concave distortion, of the multilayer reflector. The fossils provide the first evidence, to our knowledge, for the function of structural color in fossils and demonstrate the feasibility of reconstructing color in non-metallic lepidopteran fossils. Plastic scale developmental processes and complex optical mechanisms for interspecific signaling had clearly evolved in lepidopterans by the mid-Eocene.

Modelling vortex-induced fluid-structure interaction.

PubMed

Benaroya, Haym; Gabbai, Rene D

2008-04-13

The principal goal of this research is developing physics-based, reduced-order, analytical models of nonlinear fluid-structure interactions associated with offshore structures. Our primary focus is to generalize the Hamilton's variational framework so that systems of flow-oscillator equations can be derived from first principles. This is an extension of earlier work that led to a single energy equation describing the fluid-structure interaction. It is demonstrated here that flow-oscillator models are a subclass of the general, physical-based framework. A flow-oscillator model is a reduced-order mechanical model, generally comprising two mechanical oscillators, one modelling the structural oscillation and the other a nonlinear oscillator representing the fluid behaviour coupled to the structural motion.Reduced-order analytical model development continues to be carried out using a Hamilton's principle-based variational approach. This provides flexibility in the long run for generalizing the modelling paradigm to complex, three-dimensional problems with multiple degrees of freedom, although such extension is very difficult. As both experimental and analytical capabilities advance, the critical research path to developing and implementing fluid-structure interaction models entails-formulating generalized equations of motion, as a superset of the flow-oscillator models; and-developing experimentally derived, semi-analytical functions to describe key terms in the governing equations of motion. The developed variational approach yields a system of governing equations. This will allow modelling of multiple d.f. systems. The extensions derived generalize the Hamilton's variational formulation for such problems. The Navier-Stokes equations are derived and coupled to the structural oscillator. This general model has been shown to be a superset of the flow-oscillator model. Based on different assumptions, one can derive a variety of flow-oscillator models.

Adding Test Generation to the Teaching Machine

ERIC Educational Resources Information Center

Bruce-Lockhart, Michael; Norvell, Theodore; Crescenzi, Pierluigi

2009-01-01

We propose an extension of the Teaching Machine project, called Quiz Generator, that allows instructors to produce assessment quizzes in the field of algorithm and data structures quite easily. This extension makes use of visualization techniques and is based on new features of the Teaching Machine that allow third-party visualizers to be added as…

The Role of Problem Specification Workshops in Extension: An IPM Example.

ERIC Educational Resources Information Center

Foster, John; And Others

1995-01-01

Of three extension models--top-down technology transfer, farmers-first approach, and participatory research--the latter extends elements of the other two into a more comprehensive analysis of a problem and specification of solution strategies. An Australian integrated pest management (IPM) example illustrates how structured workshops are a useful…

An Introduction to the Extensible Markup Language (XML).

ERIC Educational Resources Information Center

Bryan, Martin

1998-01-01

Describes Extensible Markup Language (XML), a subset of the Standard Generalized Markup Language (SGML) that is designed to make it easy to interchange structured documents over the Internet. Topics include Document Type Definition (DTD), components of XML, the use of XML, text and non-text elements, and uses for XML-coded files. (LRW)

Folds on Europa: implications for crustal cycling and accommodation of extension.

PubMed

Prockter, L M; Pappalardo, R T

2000-08-11

Regional-scale undulations with associated small-scale secondary structures are inferred to be folds on Jupiter's moon Europa. Formation is consistent with stresses from tidal deformation, potentially triggering compressional instability of a region of locally high thermal gradient. Folds may compensate for extension elsewhere on Europa and then relax away over time.

Organizational Issues Involved in the Development and Operation of Farm Informational Systems for Modernizing Agriculture.

ERIC Educational Resources Information Center

Lionberger, Herbert F.

The need for an information development system for farmers is discussed in this paper. Issues and alternatives are described in terms of the research-extension-teaching trinity, extension services, role combinations, specialist advisor issues, innovations, research orientation, reward structures, and information services. Information gathered in…

Shewanella oneidensis MR-1 nanowires are outer membrane and periplasmic extensions of the extracellular electron transport components

PubMed Central

Pirbadian, Sahand; Barchinger, Sarah E.; Leung, Kar Man; Byun, Hye Suk; Jangir, Yamini; Bouhenni, Rachida A.; Reed, Samantha B.; Romine, Margaret F.; Saffarini, Daad A.; Shi, Liang; Gorby, Yuri A.; Golbeck, John H.; El-Naggar, Mohamed Y.

2014-01-01

Bacterial nanowires offer an extracellular electron transport (EET) pathway for linking the respiratory chain of bacteria to external surfaces, including oxidized metals in the environment and engineered electrodes in renewable energy devices. Despite the global, environmental, and technological consequences of this biotic–abiotic interaction, the composition, physiological relevance, and electron transport mechanisms of bacterial nanowires remain unclear. We report, to our knowledge, the first in vivo observations of the formation and respiratory impact of nanowires in the model metal-reducing microbe Shewanella oneidensis MR-1. Live fluorescence measurements, immunolabeling, and quantitative gene expression analysis point to S. oneidensis MR-1 nanowires as extensions of the outer membrane and periplasm that include the multiheme cytochromes responsible for EET, rather than pilin-based structures as previously thought. These membrane extensions are associated with outer membrane vesicles, structures ubiquitous in Gram-negative bacteria, and are consistent with bacterial nanowires that mediate long-range EET by the previously proposed multistep redox hopping mechanism. Redox-functionalized membrane and vesicular extensions may represent a general microbial strategy for electron transport and energy distribution. PMID:25143589

Shewanella oneidensis MR-1 nanowires are outer membrane and periplasmic extensions of the extracellular electron transport components.

PubMed

Pirbadian, Sahand; Barchinger, Sarah E; Leung, Kar Man; Byun, Hye Suk; Jangir, Yamini; Bouhenni, Rachida A; Reed, Samantha B; Romine, Margaret F; Saffarini, Daad A; Shi, Liang; Gorby, Yuri A; Golbeck, John H; El-Naggar, Mohamed Y

2014-09-02

Bacterial nanowires offer an extracellular electron transport (EET) pathway for linking the respiratory chain of bacteria to external surfaces, including oxidized metals in the environment and engineered electrodes in renewable energy devices. Despite the global, environmental, and technological consequences of this biotic-abiotic interaction, the composition, physiological relevance, and electron transport mechanisms of bacterial nanowires remain unclear. We report, to our knowledge, the first in vivo observations of the formation and respiratory impact of nanowires in the model metal-reducing microbe Shewanella oneidensis MR-1. Live fluorescence measurements, immunolabeling, and quantitative gene expression analysis point to S. oneidensis MR-1 nanowires as extensions of the outer membrane and periplasm that include the multiheme cytochromes responsible for EET, rather than pilin-based structures as previously thought. These membrane extensions are associated with outer membrane vesicles, structures ubiquitous in Gram-negative bacteria, and are consistent with bacterial nanowires that mediate long-range EET by the previously proposed multistep redox hopping mechanism. Redox-functionalized membrane and vesicular extensions may represent a general microbial strategy for electron transport and energy distribution.

Evidence that αC region is origin of low modulus, high extensibility, and strain stiffening in fibrin fibers.

PubMed

Houser, John R; Hudson, Nathan E; Ping, Lifang; O'Brien, E Timothy; Superfine, Richard; Lord, Susan T; Falvo, Michael R

2010-11-03

Fibrin fibers form the structural scaffold of blood clots and perform the mechanical task of stemming blood flow. Several decades of investigation of fibrin fiber networks using macroscopic techniques have revealed remarkable mechanical properties. More recently, the microscopic origins of fibrin's mechanics have been probed through direct measurements on single fibrin fibers and individual fibrinogen molecules. Using a nanomanipulation system, we investigated the mechanical properties of individual fibrin fibers. The fibers were stretched with the atomic force microscope, and stress-versus-strain data was collected for fibers formed with and without ligation by the activated transglutaminase factor XIII (FXIIIa). We observed that ligation with FXIIIa nearly doubled the stiffness of the fibers. The stress-versus-strain behavior indicates that fibrin fibers exhibit properties similar to other elastomeric biopolymers. We propose a mechanical model that fits our observed force extension data, is consistent with the results of the ligation data, and suggests that the large observed extensibility in fibrin fibers is mediated by the natively unfolded regions of the molecule. Although some models attribute fibrin's force-versus-extension behavior to unfolding of structured regions within the monomer, our analysis argues that these models are inconsistent with the measured extensibility and elastic modulus. Copyright © 2010 Biophysical Society. Published by Elsevier Inc. All rights reserved.

Lumbopelvic flexibility modulates neuromuscular responses during trunk flexion-extension.

PubMed

Sánchez-Zuriaga, Daniel; Artacho-Pérez, Carla; Biviá-Roig, Gemma

2016-06-01

Various stimuli such as the flexibility of lumbopelvic structures influence the neuromuscular responses of the trunk musculature, leading to different load sharing strategies and reflex muscle responses from the afferents of lumbopelvic mechanoreceptors. This link between flexibility and neuromuscular response has been poorly studied. The aim of this study was to investigate the relationship between lumbopelvic flexibility and neuromuscular responses of the erector spinae, hamstring and abdominal muscles during trunk flexion-extension. Lumbopelvic movement patterns were measured in 29 healthy women, who were separated into two groups according to their flexibility during trunk flexion-extension. The electromyographic responses of erector spinae, rectus abdominis and biceps femoris were also recorded. Subjects with greater lumbar flexibility had significantly less pelvic flexibility and vice versa. Subjects with greater pelvic flexibility had a higher rate of relaxation and lower levels of hamstring activation during maximal trunk flexion. The neuromuscular response patterns of the hamstrings seem partially modulated by pelvic flexibility. Not so with the lumbar erector spinae and lumbar flexibility, despite the assertions of some previous studies. The results of this study improve our knowledge of the relationships between trunk joint flexibility and neuromuscular responses, a relationship which may play a role in low back pain. Copyright © 2016 Elsevier Ltd. All rights reserved.

Morphological characterization of rat entorhinal neurons in vivo: soma-dendritic structure and axonal domains.

PubMed

Lingenhöhl, K; Finch, D M

1991-01-01

We used in vivo intracellular labeling with horseradish peroxidase in order to study the soma-dendritic morphology and axonal projections of rat entorhinal neurons. The cells responded to hippocampal stimulation with inhibitory postsynaptic potentials, and thus likely received direct or indirect hippocampal input. All cells (n = 24) showed extensive dendritic domains that extended in some cases for more than 1 mm. The dendrites of layer II neurons were largely restricted to layers I and II or layers I-III, while the dendrites of deeper cells could extend through all cortical layers. Computed 3D rotations showed that the basilar dendrites of deep pyramids extended roughly parallel to the cortical layering, and that they were mostly confined to the layer containing the soma and layers immediately adjacent. Total dendritic lengths averaged 9.8 mm +/- 3.8 (SD), and ranged from 5 mm to more than 18 mm. Axonal processes could be visualized in 21 cells. Most of these showed axonal branching within the entorhinal cortex, sometimes extensive. Efferent axonal domains were reconstructed in detail in 3 layer II stellate cells. All 3 projected axons across the subicular complex to the dentate gyrus. One of these cells showed an extensive net-like axonal domain that also projected to several other structures, including the hippocampus proper, subicular complex, and the amygdalo-piriform transition area. The axons of layer III and IV cells projected to the angular bundle, where they continued in a rostral direction. In contrast to the layer II, III and IV cells, no efferent axonal branches leaving the entorhinal cortex could be visualized in 5 layer V neurons. The data indicate that entorhinal neurons can integrate input from a considerable volume of entorhinal cortex by virtue of their extensive dendritic domains, and provide a further basis for specifying the layers in which cells receive synaptic input. The extensive axonal branching pattern seen in most of the cells would support divergent propagation of their activity.

Spatial and temporal patterns of neutral and adaptive genetic variation in the endangered African wild dog (Lycaon pictus).

PubMed

Marsden, Clare D; Woodroffe, Rosie; Mills, Michael G L; McNutt, J Weldon; Creel, Scott; Groom, Rosemary; Emmanuel, Masenga; Cleaveland, Sarah; Kat, Pieter; Rasmussen, Gregory S A; Ginsberg, Joshua; Lines, Robin; André, Jean-Marc; Begg, Colleen; Wayne, Robert K; Mable, Barbara K

2012-03-01

Deciphering patterns of genetic variation within a species is essential for understanding population structure, local adaptation and differences in diversity between populations. Whilst neutrally evolving genetic markers can be used to elucidate demographic processes and genetic structure, they are not subject to selection and therefore are not informative about patterns of adaptive variation. As such, assessments of pertinent adaptive loci, such as the immunity genes of the major histocompatibility complex (MHC), are increasingly being incorporated into genetic studies. In this study, we combined neutral (microsatellite, mtDNA) and adaptive (MHC class II DLA-DRB1 locus) markers to elucidate the factors influencing patterns of genetic variation in the African wild dog (Lycaon pictus); an endangered canid that has suffered extensive declines in distribution and abundance. Our genetic analyses found all extant wild dog populations to be relatively small (N(e)  < 30). Furthermore, through coalescent modelling, we detected a genetic signature of a recent and substantial demographic decline, which correlates with human expansion, but contrasts with findings in some other African mammals. We found strong structuring of wild dog populations, indicating the negative influence of extensive habitat fragmentation and loss of gene flow between habitat patches. Across populations, we found that the spatial and temporal structure of microsatellite diversity and MHC diversity were correlated and strongly influenced by demographic stability and population size, indicating the effects of genetic drift in these small populations. Despite this correlation, we detected signatures of selection at the MHC, implying that selection has not been completely overwhelmed by genetic drift. © 2012 Blackwell Publishing Ltd.

Spiroiminodihydantoin lesions derived from guanine oxidation: structures, energetics, and functional implications.

PubMed

Jia, Lei; Shafirovich, Vladimir; Shapiro, Robert; Geacintov, Nicholas E; Broyde, Suse

2005-04-26

Reactive oxygen species present in the cell generate DNA damage. One of the major oxidation products of guanine in DNA, 8-oxo-7,8-dihydroguanine, formed by loss of two electrons, is among the most extensively studied base lesions. The further removal of two electrons from this product can yield spiroiminodihydantoin (Sp) R and S stereoisomers. Both in vitro and in vivo experiments have shown that the Sp stereoisomers are highly mutagenic, causing G --> T and G --> C transversions. Hence, they are of interest as examples of endogenous DNA damage that may initiate cancer. To interpret the mutagenic properties of the Sp lesions, an understanding of their structural properties is needed. To elucidate these structural effects, we have carried out computational investigations at the level of the Sp-modified base and nucleoside. At the base level, quantum mechanical geometry optimization studies have revealed exact mirror image symmetry of the R and S stereoisomers, with a near-perpendicular geometry of the two rings. At the nucleoside level, an extensive survey of the potential energy surface by molecular mechanics calculations using AMBER has provided three-dimensional potential energy maps. These maps reveal that the range and flexibility of the glycosidic torsion angles are significantly more restricted in both stereoisomeric adducts than in unmodified 2'-deoxyguanosine. The structural and energetic results suggest that the unusual geometric, steric, and hydrogen bonding properties of these lesions underlie their mutagenicity. In addition, stereoisomer-specific differences indicate the possibility that their processing by cellular replication and repair enzymes may be differentially affected by their absolute configuration.

Extensive validation of the pain disability index in 3 groups of patients with musculoskeletal pain.

PubMed

Soer, Remko; Köke, Albère J A; Vroomen, Patrick C A J; Stegeman, Patrick; Smeets, Rob J E M; Coppes, Maarten H; Reneman, Michiel F

2013-04-20

A cross-sectional study design was performed. To validate the pain disability index (PDI) extensively in 3 groups of patients with musculoskeletal pain. The PDI is a widely used and studied instrument for disability related to various pain syndromes, although there is conflicting evidence concerning factor structure, test-retest reliability, and missing items. Additionally, an official translation of the Dutch language version has never been performed. For reliability, internal consistency, factor structure, test-retest reliability and measurement error were calculated. Validity was tested with hypothesized correlations with pain intensity, kinesiophobia, Rand-36 subscales, Depression, Roland-Morris Disability Questionnaire, Quality of Life, and Work Status. Structural validity was tested with independent backward translation and approval from the original authors. One hundred seventy-eight patients with acute back pain, 425 patients with chronic low back pain and 365 with widespread pain were included. Internal consistency of the PDI was good. One factor was identified with factor analyses. Test-retest reliability was good for the PDI (intraclass correlation coefficient, 0.76). Standard error of measurement was 6.5 points and smallest detectable change was 17.9 points. Little correlations between the PDI were observed with kinesiophobia and depression, fair correlations with pain intensity, work status, and vitality and moderate correlations with the Rand-36 subscales and the Roland-Morris Disability Questionnaire. The PDI-Dutch language version is internally consistent as a 1-factor structure, and test-retest reliable. Missing items seem high in sexual and professional items. Using the PDI as a 2-factor questionnaire has no additional value and is unreliable.

Structure and local charging of electromigrated Au nanocontacts

NASA Astrophysics Data System (ADS)

Arnold, D.; Marz, M.; Schneider, S.; Hoffmann-Vogel, R.

2017-02-01

We study the structure and the electronic properties of Au nanocontacts created by controlled electromigration of thin film devices, a method frequently used to contact molecules. In contrast to electromigration testing, a current is applied in a cyclic fashion and during each cycle the resistance increase of the metal upon heating is used to avoid thermal runaway. In this way, nanometer sized-gaps are obtained. The thin film devices with an optimized structure at the origin of the electromigration process are made by shadow evaporation without contamination by organic materials. Defining rounded edges and a thinner area in the center of the device allow to pre-determine the location where the electromigration takes place. Scanning force microscopy images of the pristine Au film and electromigrated contact show its grainy structure. Through electromigration, a 1.5 μm-wide slit is formed, with extensions only on the anode side that had previously not been observed in narrower structures. It is discussed whether this could be explained by asymmetric heating of both electrodes. New grains are formed in the slit and on the extensions on both, the anode and the cathode side. The smaller structures inside the slit lead to an electrode distance below 150 nm. Kelvin probe force microscopy images show a local work function difference with fluctuations of 70 mV on the metal before electromigration. Between the electrodes, disconnected through electromigration, a work function difference of 3.2 V is observed due to charging. Some of the grains newly formed by electromigration are electrically disconnected from the electrodes.

Effects of Volar Tilt, Wrist Extension, and Plate Position on Contact Between Flexor Pollicis Longus Tendon and Volar Plate.

PubMed

Wurtzel, Caroline N Wolfe; Burns, Geoffrey T; Zhu, Andy F; Ozer, Kagan

2017-12-01

Volar plates positioned at, or distal to, the watershed line have been shown to have a higher incidence of attritional rupture of the flexor pollicis longus (FPL). In this study, we aimed to evaluate the effect of wrist extension and volar tilt on the contact between the plate and the FPL tendon in a cadaver model. We hypothesized that, following volar plate application, loss of native volar tilt increases the contact between the FPL and the plate at lower degrees of wrist extension. A volar locking plate was applied on 6 fresh-frozen cadavers. To determine the contact between the plate and the FPL tendon, both structures were wrapped with copper wire and circuit conductivity was monitored throughout wrist motion. A lateral wrist radiograph was obtained at each circuit closure, indicating tendon-plate contact. Baseline measurements were obtained with plate positioned at Soong grades 0, 1, and 2. An extra-articular osteotomy was made and contact was recorded at various volar tilt angles (+5°, 0°, -5°, -10°, -15°, and -20°) in 3 different plate positions. A blinded observer measured the degree of wrist extension on all lateral radiographs. Data were analyzed using linear mixed-effects regression model. Plates placed distal to the watershed line had the most contact throughout wrist range of motion. Significantly, less wrist extension was required for contact in wrists with neutral or dorsal tilt and in distally placed volar plates. Volar tilt, wrist extension, and plate position were 3 independent risk factors determining contact between plate and tendon. Loss of volar tilt, increased wrist extension, and higher Soong grade plate position result in greater contact between wire-wrapped FPL tendon and plate. The FPL/plate contact chart generated in this study may be used to assess the risk of rupture in the clinical setting. Copyright © 2017 American Society for Surgery of the Hand. Published by Elsevier Inc. All rights reserved.

Structure related effects of flavonoid aglycones on cell cycle progression of HepG2 cells: Metabolic activation of fisetin and quercetin by catechol-O-methyltransferase (COMT).

PubMed

Poór, Miklós; Zrínyi, Zita; Kőszegi, Tamás

2016-10-01

Dietary flavonoids are abundant in the Plant Kingdom and they are extensively studied because of their manifold pharmacological activities. Recent studies highlighted that cell cycle arrest plays a key role in their antiproliferative effect in different tumor cells. However, structure-activity relationship of flavonoids is poorly characterized. In our study the influence of 18 flavonoid aglycones (as well as two metabolites) on cell cycle distribution was investigated. Since flavonoids are extensively metabolized by liver cells, HepG2 tumor cell line was applied, considering the potential metabolic activation/inactivation of flavonoids. Our major observations are the followings: (1) Among the tested compounds diosmetin, fisetin, apigenin, lutelin, and quercetin provoked spectacular extent of G2/M phase cell cycle arrest. (2) Inhibition of catechol-O-methyltransferase enzyme by entacapone decreased the antiproliferative effects of fisetin and quercetin. (3) Geraldol and isorhamnetin (3'-O-methylated metabolites of fisetin and quercetin, respectively) demonstrated significantly higher antiproliferative effect on HepG2 cells compared to the parent compounds. Based on these results, O-methylated flavonoid metabolites or their chemically modified derivatives may be suitable candidates of tumor therapy in the future. Copyright © 2016 Elsevier Masson SAS. All rights reserved.

Advanced composite structural concepts and material technologies for primary aircraft structures

NASA Technical Reports Server (NTRS)

Jackson, Anthony

1991-01-01

Structural weight savings using advanced composites have been demonstrated for many years. Most military aircraft today use these materials extensively and Europe has taken the lead in their use in commercial aircraft primary structures. A major inhibiter to the use of advanced composites in the United States is cost. Material costs are high and will remain high relative to aluminum. The key therefore lies in the significant reduction in fabrication and assembly costs. The largest cost in most structures today is assembly. As part of the NASA Advanced Composite Technology Program, Lockheed Aeronautical Systems Company has a contract to explore and develop advanced structural and manufacturing concepts using advanced composites for transport aircraft. Wing and fuselage concepts and related trade studies are discussed. These concepts are intended to lower cost and weight through the use of innovative material forms, processes, structural configurations and minimization of parts. The approach to the trade studies and the downselect to the primary wing and fuselage concepts is detailed. The expectations for the development of these concepts is reviewed.

Genetic diversity and structure of elite cotton germplasm (Gossypium hirsutum L.) using genome-wide SNP data.

PubMed

Ai, XianTao; Liang, YaJun; Wang, JunDuo; Zheng, JuYun; Gong, ZhaoLong; Guo, JiangPing; Li, XueYuan; Qu, YanYing

2017-10-01

Cotton (Gossypium spp.) is the most important natural textile fiber crop, and Gossypium hirsutum L. is responsible for 90% of the annual cotton crop in the world. Information on cotton genetic diversity and population structure is essential for new breeding lines. In this study, we analyzed population structure and genetic diversity of 288 elite Gossypium hirsutum cultivar accessions collected from around the world, and especially from China, using genome-wide single nucleotide polymorphisms (SNP) markers. The average polymorphsim information content (PIC) was 0.25, indicating a relatively low degree of genetic diversity. Population structure analysis revealed extensive admixture and identified three subgroups. Phylogenetic analysis supported the subgroups identified by STRUCTURE. The results from both population structure and phylogenetic analysis were, for the most part, in agreement with pedigree information. Analysis of molecular variance revealed a larger amount of variation was due to diversity within the groups. Establishment of genetic diversity and population structure from this study could be useful for genetic and genomic analysis and systematic utilization of the standing genetic variation in upland cotton.

Warehousing Structured and Unstructured Data for Data Mining.

ERIC Educational Resources Information Center

Miller, L. L.; Honavar, Vasant; Barta, Tom

1997-01-01

Describes an extensible object-oriented view system that supports the integration of both structured and unstructured data sources in either the multidatabase or data warehouse environment. Discusses related work and data mining issues. (AEF)

Structural, morphological, and optical study of titania-based nanopowders suitable for photocatalytic applications

NASA Astrophysics Data System (ADS)

Šćepanović, M.; Grujić-Brojčin, M.; Abramović, B.; Golubović, A.

2017-01-01

Systematic investigation of the relationship between structural, morphological, optical and photocatalytic properties of the titania-based nanopowders is presented. A series of pure and doped titania catalysts with various (anatase and brookite) phase compositions have been prepared by sol-gel or hydrothermal route. The crystal structure and composition of the synthesized samples have been extensively characterised by XRD and Raman scattering measurements. The nanopowder morphology has been studied using microscopic methods (SEM, AFM, and STM), whereas the porous structure has been revealed by the analysis of nitrogen sorption data. The optical and electronic properties have been studied by spectroscopic ellipsometry. All investigated properties have been correlated to photocatalytic activity, tested in degradation of the pharmaceutically active substances (such as metoprolol and alprazolam) induced by UVA or visible radiation. Based on this correlation, the physical properties which contribute most to the increase in photocatalytic activity of synthesized nanopowders have been determined, in order to optimize the synthesis conditions which could lead to the maximal efficiency in degradation of particular pollutant.

Structure of the Human Mitochondrial Ribosome Studied In Situ by Cryoelectron Tomography.

PubMed

Englmeier, Robert; Pfeffer, Stefan; Förster, Friedrich

2017-10-03

Mitochondria maintain their own genome and its corresponding protein synthesis machine, the mitochondrial ribosome (mitoribosome). Mitoribosomes primarily synthesize highly hydrophobic proteins of the inner mitochondrial membrane. Recent studies revealed the complete structure of the isolated mammalian mitoribosome, but its mode of membrane association remained hypothetical. In this study, we used cryoelectron tomography to visualize human mitoribosomes in isolated mitochondria. The subtomogram average of the membrane-associated human mitoribosome reveals a single major contact site with the inner membrane, mediated by the mitochondria-specific protein mL45. A second rRNA-mediated contact site that is present in yeast is absent in humans, resulting in a more variable association of the human mitoribosome with the inner membrane. Despite extensive structural differences of mammalian and fungal mitoribosomal structure, the principal organization of peptide exit tunnel and the mL45 homolog remains invariant, presumably to align the mitoribosome with the membrane-embedded insertion machinery. Copyright © 2017 Elsevier Ltd. All rights reserved.

Immunoglobulin Light Chains Form an Extensive and Highly Ordered Fibril Involving the N- and C-Termini

PubMed Central

2017-01-01

Light-chain (AL)-associated amyloidosis is a systemic disorder involving the formation and deposition of immunoglobulin AL fibrils in various bodily organs. One severe instance of AL disease is exhibited by the patient-derived variable domain (VL) of the light chain AL-09, a 108 amino acid residue protein containing seven mutations relative to the corresponding germline protein, κI O18/O8 VL. Previous work has demonstrated that the thermodynamic stability of native AL-09 VL is greatly lowered by two of these mutations, Y87H and N34I, whereas a third mutation, K42Q, further increases the kinetics of fibril formation. However, detailed knowledge regarding the residues that are responsible for stabilizing the misfolded fibril structure is lacking. In this study, using solid-state NMR spectroscopy, we show that the majority of the AL-09 VL sequence is immobilized in the fibrils and that the N- and C-terminal portions of the sequence are particularly well-structured. Thus, AL-09 VL forms an extensively ordered and β-strand-rich fibril structure. Furthermore, we demonstrate that the predominant β-sheet secondary structure and rigidity observed for in vitro prepared AL-09 VL fibrils are qualitatively similar to those observed for AL fibrils extracted from postmortem human spleen tissue, suggesting that this conformation may be representative of a common feature of AL fibrils. PMID:28261692

Topotactic redox chemistry of NaFeAs in water and air and superconducting behavior with stoichiometry change.

DOE Office of Scientific and Technical Information (OSTI.GOV)

Todorov, I.; Chung, D. Y.; Claus, H.

2010-07-13

We report experimental evidence that shows superconductivity in NaFeAs occurs when it is Na deficient. The oxidation of NaFeAs progresses differently in water and in air. In water the material oxidizes slowly and slightly retaining the original anti-PbFCl structure. In air NaFeAs oxidizes topotactically quickly and extensively transforming to the ThCr{sub 2}Si{sub 2} structure type. Water acts as a mild oxidizing agent on the FeAs layer by extracting electrons and Na{sup +} cations from the structure, while oxidation in air is more extensive and leads to change in structure type from NaFeAs to NaFe{sub 2}As{sub 2}. The superconducting transition temperaturemore » moves dramatically during the oxidation process. Exposed to water for an extended time period NaFeAs shows a substantial increase in T{sub c} up to 25 K with contraction of unit cell volume. NaFe{sub 2}As{sub 2}, the air oxidized product, shows T{sub c} of 12 K. We report detailed characterization of the redox chemistry and transformation of NaFeAs in water and air using single crystal and powder X-ray diffraction, magnetization studies, transmission electron microscopy, Moessbauer spectroscopy, pOH and elemental analysis.« less

Structural studies on aqueous gelatin solutions: Implications in designing a thermo-responsive nanoparticulate formulation.

PubMed

Ahsan, Saad M; Rao, Ch Mohan

2017-02-01

Gelatin as a polymer has found extensive application in the pharmaceutical industry. It is also being used, as a matrix molecule, for nanoparticle based drug delivery applications. Gelatin nanoparticles synthesised, keeping the native structure intact, show interesting properties. Synthesizing such nanoparticles requires an understanding of the structural features of gelatin under conditions of nanoparticle synthesis and preserving them during the process. To address this we have carried out an extensive characterization of gelatin using circular dichroism (CD) spectroscopy, differential scanning calorimetry (DSC) and scanning electron microscopy (SEM) under various reaction conditions that are utilized in the desolvation method for gelatin nanoparticle synthesis. We investigated the gel-sol transition, hysteresis and gelatin fibre morphology under different pH and temperature conditions. We also investigated the temperature and pH dependence of triple-helix to random-coil transition in gelatin. We finally demonstrate the synthesis of gelatin nanoparticles with native gelatin. These nanoparticles show shrinkage in size (∼90nm) with increase in temperature from 30°C (369.4 ±19.8) to 40°C (282.3±9.8). Our results suggest that by carefully selecting the reaction conditions, it is possible to synthesise nanoparticles having partially folded structures and with a varying degree of sensitivity towards temperature and pH. Copyright © 2016 Elsevier B.V. All rights reserved.

Some studies on the use of NASTRAN for nuclear power plant structural analysis and design

NASA Technical Reports Server (NTRS)

Setlur, A. V.; Valathur, M.

1973-01-01

Studies made on the use of NASTRAN for nuclear power plant analysis and design are presented. These studies indicate that NASTRAN could be effectively used for static, dynamic and special purpose problems encountered in the design of such plants. Normal mode capability of NASTRAN is extended through a post-processor program to handle seismic analysis. Static and dynamic substructuring is discussed. Extension of NASTRAN to include the needs in the civil engineering industry is discussed.

The Structure of Temperament in Preschoolers: A Two-Stage Factor Analytic Approach

PubMed Central

Dyson, Margaret W.; Olino, Thomas M.; Durbin, C. Emily; Goldsmith, H. Hill; Klein, Daniel N.

2012-01-01

The structure of temperament traits in young children has been the subject of extensive debate, with separate models proposing different trait dimensions. This research has relied almost exclusively on parent-report measures. The present study used an alternative approach, a laboratory observational measure, to explore the structure of temperament in preschoolers. A 2-stage factor analytic approach, exploratory factor analyses (n = 274) followed by confirmatory factor analyses (n = 276), was used. We retrieved an adequately fitting model that consisted of 5 dimensions: Sociability, Positive Affect/Interest, Dysphoria, Fear/Inhibition, and Constraint versus Impulsivity. This solution overlaps with, but is also distinct from, the major models derived from parent-report measures. PMID:21859196

High-entropy alloys in hexagonal close-packed structure

DOE PAGES

Gao, Michael C.; Zhang, B.; Guo, S. M.; ...

2015-08-28

The microstructures and properties of high-entropy alloys (HEAs) based on the face-centered cubic and body-centered cubic structures have been studied extensively in the literature, but reports on HEAs in the hexagonal close-packed (HCP) structure are very limited. Using an efficient strategy in combining phase diagram inspection, CALPHAD modeling, and ab initio molecular dynamics simulations, a variety of new compositions are suggested that may hold great potentials in forming single-phase HCP HEAs that comprise rare earth elements and transition metals, respectively. Lastly, experimental verification was carried out on CoFeReRu and CoReRuV using X-ray diffraction, scanning electron microscopy, and energy dispersion spectroscopy.

An elevated source/drain-on-insulator structure to maximize the intrinsic performance of extremely scaled MOSFETs

NASA Astrophysics Data System (ADS)

Zhang, Zhikuan; Zhang, Shengdong; Feng, Chuguang; Chan, Mansun

2003-10-01

In this paper, a source/drain structure separated from the silicon substrate by oxide isolation is fabricated and studied. The source/drain diffusion regions are connected to the shallow source/drain extension through a smaller opening defined by a double spacer process. Experimental results indicate that the source/drain on insulator significantly reduces the parasitic capacitance. Further optimization by simulation indicates a reduction of series resistance and band-to-band drain leakage at off-state can be achieved in extremely scaled devices. Compared with the conventional planner source/drain structure, the reduction of parasitic capacitance and series resistance can be as much as 80% and 30% respectively.

The X chromosome in space.

PubMed

Jégu, Teddy; Aeby, Eric; Lee, Jeannie T

2017-06-01

Extensive 3D folding is required to package a genome into the tiny nuclear space, and this packaging must be compatible with proper gene expression. Thus, in the well-hierarchized nucleus, chromosomes occupy discrete territories and adopt specific 3D organizational structures that facilitate interactions between regulatory elements for gene expression. The mammalian X chromosome exemplifies this structure-function relationship. Recent studies have shown that, upon X-chromosome inactivation, active and inactive X chromosomes localize to different subnuclear positions and adopt distinct chromosomal architectures that reflect their activity states. Here, we review the roles of long non-coding RNAs, chromosomal organizational structures and the subnuclear localization of chromosomes as they relate to X-linked gene expression.

Modeling of Oligosaccharides within Glycoproteins from Free-Energy Landscapes

PubMed Central

2017-01-01

In spite of the abundance of glycoproteins in biological processes, relatively little three-dimensional structural data is available for glycan structures. Here, we study the structure and flexibility of the vast majority of mammalian oligosaccharides appearing in N- and O-glycosylated proteins using a bottom up approach. We report the conformational free-energy landscapes of all relevant glycosidic linkages as obtained from local elevation simulations and subsequent umbrella sampling. To the best of our knowledge, this represents the first complete conformational library for the construction of N- and O-glycan structures. Next, we systematically study the effect of neighboring residues, by extensively simulating all relevant trisaccharides and one tetrasaccharide. This allows for an unprecedented comparison of disaccharide linkages in large oligosaccharides. With a small number of exceptions, the conformational preferences in the larger structures are very similar as in the disaccharides. This, finally, allows us to suggest several efficient approaches to construct complete N- and O-glycans on glycoproteins, as exemplified on two relevant examples. PMID:28816453

Spontaneous scale-free structure in adaptive networks with synchronously dynamical linking

NASA Astrophysics Data System (ADS)

Yuan, Wu-Jie; Zhou, Jian-Fang; Li, Qun; Chen, De-Bao; Wang, Zhen

2013-08-01

Inspired by the anti-Hebbian learning rule in neural systems, we study how the feedback from dynamical synchronization shapes network structure by adding new links. Through extensive numerical simulations, we find that an adaptive network spontaneously forms scale-free structure, as confirmed in many real systems. Moreover, the adaptive process produces two nontrivial power-law behaviors of deviation strength from mean activity of the network and negative degree correlation, which exists widely in technological and biological networks. Importantly, these scalings are robust to variation of the adaptive network parameters, which may have meaningful implications in the scale-free formation and manipulation of dynamical networks. Our study thus suggests an alternative adaptive mechanism for the formation of scale-free structure with negative degree correlation, which means that nodes of high degree tend to connect, on average, with others of low degree and vice versa. The relevance of the results to structure formation and dynamical property in neural networks is briefly discussed as well.

Evolution of the northern Main Ethiopian rift: birth of a triple junction

NASA Astrophysics Data System (ADS)

Wolfenden, Ellen; Ebinger, Cynthia; Yirgu, Gezahegn; Deino, Alan; Ayalew, Dereje

2004-07-01

Models for the formation of the archetypal rift-rift-rift triple junction in the Afar depression have assumed the synchronous development of the Red Sea-Aden-East African rift systems soon after flood basaltic magmatism at 31 Ma, but the timing of intial rifting in the northern sector of the East African rift system had been poorly constrained. The aims of our field, geochronology, and remote sensing studies were to determine the timing and kinematics of rifting in the 3rd arm, the Main Ethiopian rift (MER), near its intersection with the southern Red Sea rift. New structural data and 10 new SCLF 40Ar/39Ar dates show that extension in the northern Main Ethiopian rift commenced after 11 Ma, more than 17 My after initial rifting in the southern Red Sea and Gulf of Aden. The triple junction, therefore, could have developed only during the past 11 My, or 20 My after the flood basaltic magmatism. Thus, the flood basaltic magmatism and separation of Arabia from Africa are widely separated in time from the opening of the Main Ethiopian rift, which marks the incipient Nubia-Somalia plate boundary; triple junction formation is not a primary feature of breakup above the Afar mantle plume. The East African rift system appears to have propagated northward from the Mesozoic Anza rift system into the Afar depression to cut across Oligo-Miocene rift structures of the Red Sea and Gulf of Aden, in response to global plate reorganisations. Structural patterns reveal a change from 130°E-directed extension to 105°E-directed extension sometime in the interval 6.6 to 3 Ma, consistent with predictions from global plate kinematic studies. The along-axis propagation of rifting in each of the three arms of the triple junction has led to a NE-migration of the triple junction since 11 Ma.

Fast protein tertiary structure retrieval based on global surface shape similarity.

PubMed

Sael, Lee; Li, Bin; La, David; Fang, Yi; Ramani, Karthik; Rustamov, Raif; Kihara, Daisuke

2008-09-01

Characterization and identification of similar tertiary structure of proteins provides rich information for investigating function and evolution. The importance of structure similarity searches is increasing as structure databases continue to expand, partly due to the structural genomics projects. A crucial drawback of conventional protein structure comparison methods, which compare structures by their main-chain orientation or the spatial arrangement of secondary structure, is that a database search is too slow to be done in real-time. Here we introduce a global surface shape representation by three-dimensional (3D) Zernike descriptors, which represent a protein structure compactly as a series expansion of 3D functions. With this simplified representation, the search speed against a few thousand structures takes less than a minute. To investigate the agreement between surface representation defined by 3D Zernike descriptor and conventional main-chain based representation, a benchmark was performed against a protein classification generated by the combinatorial extension algorithm. Despite the different representation, 3D Zernike descriptor retrieved proteins of the same conformation defined by combinatorial extension in 89.6% of the cases within the top five closest structures. The real-time protein structure search by 3D Zernike descriptor will open up new possibility of large-scale global and local protein surface shape comparison. 2008 Wiley-Liss, Inc.

Magma-poor vs. magma-rich continental rifting and breakup in the Labrador Sea

NASA Astrophysics Data System (ADS)

Gouiza, M.; Paton, D.

2017-12-01

Magma-poor and magma-rich rifted margins show distinct structural and stratigraphic geometries during the rift to breakup period. In magma-poor margins, crustal stretching is accommodated mainly by brittle faulting and the formation of wide rift basins shaped by numerous graben and half-graben structures. Continental breakup and oceanic crust accretion are often preceded by a localised phase of (hyper-) extension where the upper mantle is embrittled, serpentinized, and exhumed to the surface. In magma-rich margins, the rift basin is narrow and extension is accompanied by a large magmatic supply. Continental breakup and oceanic crust accretion is preceded by the emplacement of a thick volcanic crust juxtaposing and underplating a moderately thinned continental crust. Both magma-poor and magma-rich rifting occur in response to lithospheric extension but the driving forces and processes are believed to be different. In the former extension is assumed to be driven by plate boundary forces, while in the latter extension is supposed to be controlled by sublithospheric mantle dynamics. However, this view fails in explaining observations from many Atlantic conjugate margins where magma-poor and magma-rich segments alternate in a relatively abrupt fashion. This is the case of the Labrador margin where the northern segment shows major magmatic supply during most of the syn-rift phase which culminate in the emplacement of a thick volcanic crust in the transitional domain along with high density bodies underplating the thinned continental crust; while the southern segment is characterized mainly by brittle extension, mantle seprentinization and exhumation prior to continental breakup. In this work, we use seismic and potential field data to describe the crustal and structural architectures of the Labrador margin, and investigate the tectonic and mechanical processes of rifting that may have controlled the magmatic supply in the different segments of the margin.

Structural Priming: A Critical Review

ERIC Educational Resources Information Center

Pickering, Martin J.; Ferreira, Victor S.

2008-01-01

Repetition is a central phenomenon of behavior, and researchers have made extensive use of it to illuminate psychological functioning. In the language sciences, a ubiquitous form of such repetition is "structural priming," a tendency to repeat or better process a current sentence because of its structural similarity to a previously experienced…

Generalized Structured Component Analysis with Latent Interactions

ERIC Educational Resources Information Center

Hwang, Heungsun; Ho, Moon-Ho Ringo; Lee, Jonathan

2010-01-01

Generalized structured component analysis (GSCA) is a component-based approach to structural equation modeling. In practice, researchers may often be interested in examining the interaction effects of latent variables. However, GSCA has been geared only for the specification and testing of the main effects of variables. Thus, an extension of GSCA…

Effects of Cooperative, Competitive, and Individualized Goal Structures on Learning Outcomes.

ERIC Educational Resources Information Center

Johnson, David W.; Johnson, Roger T.

A theoretical orientation to three goal structures (cooperation, competition, and individualization) is postulated, based upon Deutsch's extension of Lewin's theory of motivation. Lewin postulated that a state of tension within a person motivates movement toward the accomplishment of desired goals; a goal structure specifies the type of…

Regularized Generalized Structured Component Analysis

ERIC Educational Resources Information Center

Hwang, Heungsun

2009-01-01

Generalized structured component analysis (GSCA) has been proposed as a component-based approach to structural equation modeling. In practice, GSCA may suffer from multi-collinearity, i.e., high correlations among exogenous variables. GSCA has yet no remedy for this problem. Thus, a regularized extension of GSCA is proposed that integrates a ridge…

77 FR 12563 - Manufacturing Extension Partnership (MEP) Centers for South Dakota and Kentucky; Availability of...

Federal Register 2010, 2011, 2012, 2013, 2014

2012-03-01

... regionally-based MEP center and local technology resources. The management and operational structure of an... Center? a. Organizational Structure. Completeness and appropriateness of the organizational structure... performance, and strengthen the global competitiveness of primarily small- and medium-sized U.S.-based...