Terrestrial Planet Finder Coronagraph overview of technology development & system design

NASA Technical Reports Server (NTRS)

Balasubramanian, Kunjuthapatham; Ford, Virginia; Mouroulis, Pantazis; Hoppe, Daniel; Shaklan, Stuart

2004-01-01

Astronomers have discovered over 150 planets orbiting other stars. NASA mission; Find and characterize terrestrial (or rocky) exo-planets that might harbor life (like Earth)liquid water on the planet (habitable zone). An atmosphere that indicates the presence of life water, oxygen, ozone, carbon dioxide, chlorophyll, and methane. Two missions under development: A coronagraph and an interferometer.

High-Contrast Coronagraph Performance in the Presence of DM Actuator Defects

NASA Technical Reports Server (NTRS)

Sidick, Erkin; Shaklan, Stuart; Cady, Eric

2015-01-01

Deformable Mirrors (DMs) are critical elements in high contrast coronagraphs, requiring precision and stability measured in picometers to enable detection of Earth-like exoplanets. Occasionally DM actuators or their associated cables or electronics fail, requiring a wavefront control algorithm to compensate for actuators that may be displaced from their neighbors by hundreds of nanometers. We have carried out experiments on our High-Contrast Imaging Testbed (HCIT) to study the impact of failed actuators in partial fulfillment of the Terrestrial Planet Finder Coronagraph optical model validation milestone. We show that the wavefront control algorithm adapts to several broken actuators and maintains dark-hole contrast in broadband light.

High-contrast coronagraph performance in the presence of DM actuator defects

NASA Astrophysics Data System (ADS)

Sidick, Erkin; Shaklan, Stuart; Cady, Eric

2015-09-01

Deformable Mirrors (DMs) are critical elements in high contrast coronagraphs, requiring precision and stability measured in picometers to enable detection of Earth-like exoplanets. Occasionally DM actuators or their associated cables or electronics fail, requiring a wavefront control algorithm to compensate for actuators that may be displaced from their neighbors by hundreds of nanometers. We have carried out experiments on our High-Contrast Imaging Testbed (HCIT) to study the impact of failed actuators in partial fulfilment of the Terrestrial Planet Finder Coronagraph optical model validation milestone. We show that the wavefront control algorithm adapts to several broken actuators and maintains dark-hole contrast in broadband light.

The PIAA Coronagraph: Optical design and Diffraction Effects

NASA Astrophysics Data System (ADS)

Pluzhnik, E. A.; Guyon, O.; Ridgway, S.; Martinache, F.; Woodruff, R.; Blain, C.; Galicher, R.

2005-12-01

Properly apodized pupils are suitable for high dynamical range imaging of extrasolar terrestrial planets. Phase-induced amplitude apodization (PIAA) of the telescope pupil (Guyon 2003) combines the advantages of classical pupil apodization with full throughput, no loss of angular resolution and low chromaticity. Diffraction propagation effects can decrease both the achieved contrast and the spectral bandwidth of the coronagraph. We show here how the diffraction effects in the PIAA optics can be corrected by an appropriate optical design. The proposed hybrid coronagraph design preserves the 10-10 PSF contrast at ≈ 1.5 λ /d required for efficient exoplanet imaging over the whole visible spectrum. This work was carried out under JPL contract numbers 1254445 and 1257767 for Development of Technologies for the Terrestrial Planet Finder Mission, with the support and hospitality of the National Astronomical Observatory of Japan.

Development of the Terrestrial Planet Finder Coronagraph membrane V-grooves

NASA Technical Reports Server (NTRS)

Fang, Houfei; Ho, Timothy; Chen, Gun-Shing; Quijano, Ubaldo

2004-01-01

The Terrestrial Planet Finder mission will study all aaspecs of planets outside our solar system: from their formation and development in disks of dust and gas around newly forming stars to the presence of those planets orbiting the nearest stars; from the numbers at various sizes and places to their suitability as an abode for life.

Stability Error Budget for an Aggressive Coronagraph on a 3.8 m Telescope

NASA Technical Reports Server (NTRS)

Shaklan, Stuart B.; Marchen, Luis; Krist, John; Rud, Mayer

2011-01-01

We evaluate in detail the stability requirements for a band-limited coronagraph with an inner working angle as small as 2 lambda/D coupled to an off-axis, 3.8-m diameter telescope. We have updated our methodologies since presenting a stability error budget for the Terrestrial Planet Finder Coronagraph mission that worked at 4 lambda/D and employed an 8th-order mask to reduce aberration sensitives. In the previous work, we determined the tolerances relative to the total light leaking through the coronagraph. Now, we separate the light into a radial component, which is readily separable from a planet signal, and an azimuthal component, which is easily confused with a planet signal. In the current study, throughput considerations require a 4th-order coronagraph. This, combined with the more aggressive working angle, places extraordinarily tight requirements on wavefront stability and opto-mechanical stability. We find that the requirements are driven mainly by coma that leaks around the coronagraph mask and mimics the localized signal of a planet, and pointing errors that scatter light into the background, decreasing SNR. We also show how the requirements would be relaxed if a low-order aberration detection system could be employed.

Jovian Planet Finder optical system

NASA Astrophysics Data System (ADS)

Krist, John E.; Clampin, Mark; Petro, Larry; Woodruff, Robert A.; Ford, Holland C.; Illingworth, Garth D.; Ftaclas, Christ

2003-02-01

The Jovian Planet Finder (JPF) is a proposed NASA MIDEX mission to place a highly optimized coronagraphic telescope on the International Space Station (ISS) to image Jupiter-like planets around nearby stars. The optical system is an off-axis, unobscured telescope with a 1.5 m primary mirror. A classical Lyot coronagraph with apodized occulting spots is used to reduce diffracted light from the central star. In order to provide the necessary contrast for detection of a planet, scattered light from mid-spatial-frequency errors is reduced by using super-smooth optics. Recent advances in polishing optics for extreme-ultraviolet lithography have shown that a factor of >30 reduction in midfrequency errors relative to those in the Hubble Space Telescope is possible (corresponding to a reduction in scattered light of nearly 1000x). The low level of scattered and diffracted light, together with a novel utilization of field rotation introduced by the alt-azimuth ISS telescope mounting, will provide a relatively low-cost facility for not only imaging extrasolar planets, but also circumstellar disks, host galaxies of quasars, and low-mass substellar companions such as brown dwarfs.

Accurate time delay technology in simulated test for high precision laser range finder

NASA Astrophysics Data System (ADS)

Chen, Zhibin; Xiao, Wenjian; Wang, Weiming; Xue, Mingxi

2015-10-01

With the continuous development of technology, the ranging accuracy of pulsed laser range finder (LRF) is higher and higher, so the maintenance demand of LRF is also rising. According to the dominant ideology of "time analog spatial distance" in simulated test for pulsed range finder, the key of distance simulation precision lies in the adjustable time delay. By analyzing and comparing the advantages and disadvantages of fiber and circuit delay, a method was proposed to improve the accuracy of the circuit delay without increasing the count frequency of the circuit. A high precision controllable delay circuit was designed by combining the internal delay circuit and external delay circuit which could compensate the delay error in real time. And then the circuit delay accuracy could be increased. The accuracy of the novel circuit delay methods proposed in this paper was actually measured by a high sampling rate oscilloscope actual measurement. The measurement result shows that the accuracy of the distance simulated by the circuit delay is increased from +/- 0.75m up to +/- 0.15m. The accuracy of the simulated distance is greatly improved in simulated test for high precision pulsed range finder.

Comparison of Simulated Contrast Performance of Different Phase Induced Amplitude Apodization (PIAA) Coronagraph Configurations

NASA Technical Reports Server (NTRS)

Sidick, Erkin; Kern, Brian; Kuhnert, Andreas; Shaklan, Stuart

2013-01-01

We compare the broadband contrast performances of several Phase Induced Amplitude Apodization (PIAA) coronagraph configurations through modeling and simulations. The basic optical design of the PIAA coronagraph is the same as NASA's High Contrast Imaging Testbed (HCIT) setup at the Jet Propulsion Laboratory (JPL). Using a deformable mirror and a broadband wavefront sensing and control algorithm, we create a "dark hole" in the broadband point-spread function (PSF) with an inner working angle (IWA) of 2(f lambda/D)(sub sky). We evaluate two systems in parallel. One is a perfect system having a design PIAA output amplitude and not having any wavefront error at its exit-pupil. The other is a realistic system having a design PIAA output amplitude and the measured residual wavefront error. We also investigate the effect of Lyot stops of various sizes when a postapodizer is and is not present. Our simulations show that the best 7.5%-broadband contrast value achievable with the current PIAA coronagraph is approximately 1.5x10(exp -8).

The Phase-Induced Amplitude Apodization Coronagraph (PIAAC): Performance for Imaging of Earth-like Exoplanets.

NASA Astrophysics Data System (ADS)

Martinache, F.; Guyon, O.; Pluzhnik, E.; Ridgway, S.; Galicher, R.

2004-12-01

PIAA is one of the powerful applications of pupil remapping. A set of two aspheric mirrors changes the distribution of light and provides an apodized pupil, suitable for coronagraphy, without light loss on an absorbing mask. Deployed on to a space telescope with coronagraphic quality optics, it may allow planet detection from a 1.2 λ /d inner working distance and a full working field. We describe the performance of a PIAA version of NASA's Terrestrial Planet Finder (TPF) in terms of Signal to Noise Ratio and compare it to Classical Pupil Apodization (CPA) performance. We also discuss the necessity of using different occulting masks and give an estimate of the total exposure time for the planet detection phase of the TPF mission. This study is based on realistic Monte Carlo simulations of terrestrial planets orbiting around F, G, K stars within 30 pc around the solar system and includes planet phase and angular separation probabilities. This work was carried out under JPL contract numbers 1254445 and 1257767 for Development of Technologies for the Terrestrial Planet Finder Mission, with the support and hospitality of the National Astronomical Observatory of Japan.

First Steps on the Design of the Optical Differentiation Coronagraph

NASA Astrophysics Data System (ADS)

Cagigal, M. P.; Canales, V. F.; Valle, P. J.; Sanchez-Blanco, E.; Maldonado, M.; Garcia-Vargas, M. L.; Sanchez-Blanco, E.; Maldonado, M.; Garcia-Vargas, M. L.

2010-10-01

We present the UC coronagraph, an instrument designed for exoplanet detection. It is based on a standard coronagraph where the occulting disc is substituted by a differentiation mask. The instrument includes the coronagraph itself, a star generator, and a telescope simulator. The coronagraph is mechanically independent of both auxiliary subsystems, to allow its use in an actual astronomical telescope. The turbulence generation will be simulated with a spatial light modulator (SLM) placed at the nominal pupil.

Pointing Control System Design and Performance Evaluation for TPF Coronagraph

NASA Technical Reports Server (NTRS)

Liu, Kuo-Chia; Blaurock, Carl; Mosier, Gary

2004-01-01

The Terrestrial Planet Finder (TPF) program aims to detect and characterize extra-solar Earth-like planets. The coronagraph telescope is one of the four mission concepts being studied. In order to reject the star flux and detect the planet flux in the visible light range, the coronagraph telescope must achieve a rejection ratio on the order of a billion to one. Dynamic jitter, introduced by environmental and on-board mechanical disturbances, degrades the optical performance, as characterized primarily by contrast ratio. The feasibility of using passive vibration isolation combined with active attitude and line-of- sight control systems to stabilize the spacecraft and the optical components to the requisite level is being studied. The telescope is also required to slew between targets. The slew mode control law must be designed to balance the need for efficient large-angle maneuvers while simultaneously avoiding the excitation of flexible modes in order to minimize settling time.

Technology development towards WFIRST-AFTA coronagraph

NASA Astrophysics Data System (ADS)

Poberezhskiy, Ilya; Zhao, Feng; An, Xin; Balasubramanian, Kunjithapatham; Belikov, Ruslan; Cady, Eric; Demers, Richard; Diaz, Rosemary; Gong, Qian; Gordon, Brian; Goullioud, Renaud; Greer, Frank; Guyon, Olivier; Hoenk, Michael; Kasdin, N. Jeremy; Kern, Brian; Krist, John; Kuhnert, Andreas; McElwain, Michael; Mennesson, Bertrand; Moody, Dwight; Muller, Richard; Nemati, Bijan; Patterson, Keith; Riggs, A. J.; Ryan, Daniel; Seo, Byoung-Joon; Shaklan, Stuart; Sidick, Erkin; Shi, Fang; Siegler, Nicholas; Soummer, Rémi; Tang, Hong; Trauger, John; Wallace, J. Kent; Wang, Xu; White, Victor; Wilson, Daniel; Yee, Karl; Zhou, Hanying; Zimmerman, Neil

2014-08-01

NASA's WFIRST-AFTA mission concept includes the first high-contrast stellar coronagraph in space. This coronagraph will be capable of directly imaging and spectrally characterizing giant exoplanets similar to Neptune and Jupiter, and possibly even super-Earths, around nearby stars. In this paper we present the plan for maturing coronagraph technology to TRL5 in 2014-2016, and the results achieved in the first 6 months of the technology development work. The specific areas that are discussed include coronagraph testbed demonstrations in static and simulated dynamic environment, design and fabrication of occulting masks and apodizers used for starlight suppression, low-order wavefront sensing and control subsystem, deformable mirrors, ultra-low-noise spectrograph detector, and data post-processing.

Partially Filled Aperture Interferometric Telescopes: Achieving Large Aperture and Coronagraphic Performance

NASA Astrophysics Data System (ADS)

Moretto, G.; Kuhn, J.; Langlois, M.; Berdugyna, S.; Tallon, M.

2017-09-01

Telescopes larger than currently planned 30-m class instruments must break the mass-aperture scaling relationship of the Keck-generation of multi-segmented telescopes. Partially filled aperture, but highly redundant baseline interferometric instruments may achieve both large aperture and high dynamic range. The PLANETS FOUNDATION group has explored hybrid telescope-interferometer concepts for narrow-field optical systems that exhibit coronagraphic performance over narrow fields-of-view. This paper describes how the Colossus and Exo-Life Finder telescope designs achieve 10x lower moving masses than current Extremely Large Telescopes.

A New Concept of Coronagraph using Axicon Lenses

NASA Astrophysics Data System (ADS)

Choi, Jae Ho

2017-06-01

High-contrast direct imaging of faint objects nearby bright stellar is essential to investigate planetary systems. The goal of such effort is to find and characterize planets similar to Earth that is a challenging task due to it requires a high angular resolution and high dynamic range detections concurrently. A coronagraph that can be suppressed the bright stellar light or active galactic nuclei during the direct detection of astrophysical activities became one of the essential instruments to image exoplanets. In this presentation, a novel concept of a coronagraph using axicon-lenses is will be presented that is conjunction with a method of noninterferometric quantitative phase imaging for direct imaging of exoplanets. The essential scheme of the axicon-lenses coronagraph is the apodization carried out by excluding evaginated images of the planetary systems by a pair of axicon lens. The laboratory based coronagraph imaging is carried out with the axicon-lenses coronagraph setup which included the axicon lenses optics and phase contrast imaging unit. A simulated stellar and its companion are provided by illuminating light through small holes drilled on a thin metal plate. Those diffracted light at the edge of the holes bears a similarity to the light from the bright stellar. The images are evaginated about the optical axis by passing the first axicon lens. Then the evaginated beams of its external area have cut off by an iris which means the suppressed its central light of the bright stellar light preferentially. A symbolic calculation also is carried out to verify the scheme of the the axicon-lenses coronagraph using the symbolic computation program. The simulation results are shown that the the axicon-lenses coronagraph has feature of ability to achieve the IWA smaller than l/D. The laboratory based coronagraph imaging and simulation results support its potentials in direct imaging for finding exo-planet and various astrophysical activities.

The Phase-Induced Amplitude Apodization Coronagraph (PIAAC): A High Performance Coronagraph for Exoplanet Imaging

NASA Astrophysics Data System (ADS)

Guyon, O.; Pluzhnik, E.; Martinache, F.; Ridgway, S.; Galicher, R.

2004-12-01

Using 2 aspheric mirrors, it is possible to achromatically apodize a telescope beam without losing light (Phase-Induced Amplitude Apodization, PIAA). We propose a coronagraph concept using this technique: the telescope pupil is first apodized to yield a high contrast focal plane image, on which an occulting mask is placed. The exit pupil is then de-apodized to regain a large field of view. We show that the PIAAC combines all the qualities needed for efficient exoplanet imaging: full throughput, small inner working angle (1.2 l/d), high angular resolution (l/d), low sensitivity to tip-tilt, and large field of view (more than 200 l/d in diameter). We conclude that PIAAC is well adapted for exoplanet imaging with a 4m to 6m space telescope (TPF mission). This work was carried out under JPL contract numbers 1254445 and 1257767 for Development of Technologies for the Terrestrial Planet Finder Mission, with the support and hospitality of the National Astronomical Observatory of Japan.

Advanced computer graphic techniques for laser range finder (LRF) simulation

NASA Astrophysics Data System (ADS)

Bedkowski, Janusz; Jankowski, Stanislaw

2008-11-01

This paper show an advanced computer graphic techniques for laser range finder (LRF) simulation. The LRF is the common sensor for unmanned ground vehicle, autonomous mobile robot and security applications. The cost of the measurement system is extremely high, therefore the simulation tool is designed. The simulation gives an opportunity to execute algorithm such as the obstacle avoidance[1], slam for robot localization[2], detection of vegetation and water obstacles in surroundings of the robot chassis[3], LRF measurement in crowd of people[1]. The Axis Aligned Bounding Box (AABB) and alternative technique based on CUDA (NVIDIA Compute Unified Device Architecture) is presented.

Small-Grid Dithers for the JWST Coronagraphs

NASA Technical Reports Server (NTRS)

Lajoie, Charles-Philippe; Soummer, Remi; Pueyo, Laurent; Hines, Dean C.; Nelan, Edmund P.; Perrin, Marshall; Clampin, Mark; Isaacs, John C.

2016-01-01

We discuss new results of coronagraphic simulations demonstrating a novel mode for JWST that utilizes sub-pixel dithered reference images, called Small-Grid Dithers, to optimize coronagraphic PSF subtraction. These sub-pixel dithers are executed with the Fine Steering Mirror under fine guidance, are accurate to approx.2-3 milliarcseconds (1-s/axis), and provide ample speckle diversity to reconstruct an optimized synthetic reference PSF using LOCI or KLIP. We also discuss the performance gains of Small-Grid Dithers compared to the standard undithered scenario, and show potential contrast gain factors for the NIRCam and MIRI coronagraphs ranging from 2 to more than 10, respectively.

WFIRST Coronagraph Technology Development Testbeds: Status and Recent Testbed Results

NASA Astrophysics Data System (ADS)

Shi, Fang; An, Xin; Balasubramanian, Kunjithapatham; cady, eric; Gordon, Brian; Greer, Frank; Kasdin, N. Jeremy; Kern, Brian; Lam, Raymond; Marx, David; Moody, Dwight; Patterson, Keith; Poberezhskiy, Ilya; mejia prada, camilo; Gersh-Range, Jessica; Eldorado Riggs, A. J.; Seo, Byoung-Joon; Shields, Joel; Sidick, Erkin; Tang, Hong; Trauger, John Terry; Truong, Tuan; White, Victor; Wilson, Daniel; Zhou, Hanying; JPL WFIRST Testbed Team, Princeton University

2018-01-01

As a part of technology development for the WFIRST coronagraph instrument (CGI), dedicated testbeds are built and commissioned at JPL. The coronagraph technology development testbeds include the Occulting Mask Coronagraph (OMC) testbed, the Shaped Pupil Coronagraph/Integral Field Spectrograph (SPC/IFS) testbed, and the Vacuum Surface Gauge (VSG) testbed. With its configuration similar to the WFIRST flight coronagraph instrument the OMC testbed consists of two coronagraph modes, Shaped Pupil Coronagraph (SPC) and Hybrid Lyot Coronagraph (HLC), a low order wavefront sensor (LOWFS), and an optical telescope assembly (OTA) simulator which can generate realistic LoS drift and jitter as well as low order wavefront error that would be induced by the WFIRST telescope’s vibration and thermal changes. The SPC/IFS testbed is a dedicated testbed to test the IFS working with a Shaped Pupil Coronagraph while the VSG testbed is for measuring and calibrating the deformable mirrors, a key component used for WFIRST CGI's wavefront control. In this poster, we will describe the testbed functions and status as well as the highlight of the latest testbed results from OMC, SPC/IFS and VSG testbeds.

Coronagraphic mask design using Hermite functions.

PubMed

Cagigal, Manuel P; Canales, Vidal F; Valle, Pedro J; Oti, José E

2009-10-26

We introduce a stellar coronagraph that uses a coronagraphic mask described by a Hermite function or a combination of them. It allows the detection of exoplanets providing both deep starlight extinction and high angular resolution. This angular resolution depends on the order of the Hermite function used. An analysis of the coronagraph performance is carried out for different even order masks. Numerical simulations of the ideal case, with no phase errors and perfect telescope pointing, show that on-axis starlight is reduced to very low intensity levels corresponding to a gain of at least 25 magnitudes (10(-10) light intensity reduction). The coronagraphic throughput depends on the Hermite function or combination selected. The proposed mask series presents the same advantages of band limited masks along with the benefit of reducing the light diffracted by the mask border thanks to its particular shape. Nevertheless, for direct detection of Earth-like exoplanets it requires the use of adaptive optics facilities for compensating the perturbations introduced by the atmosphere and by the optical system.

Terrestrial Planet Finder: Technology Development Plans

NASA Technical Reports Server (NTRS)

Lindensmith, Chris

2004-01-01

One of humanity's oldest questions is whether life exists elsewhere in the universe. The Terrestrial Planet Finder (TPF) mission will survey stars in our stellar neighborhood to search for planets and perform spectroscopic measurements to identify potential biomarkers in their atmospheres. In response to the recently published President's Plan for Space Exploration, TPF has plans to launch a visible-light coronagraph in 2014, and a separated-spacecraft infrared interferometer in 2016. Substantial funding has been committed to the development of the key technologies that are required to meet these goals for launch in the next decade. Efforts underway through industry and university contracts and at JPL include a number of system and subsystem testbeds, as well as components and numerical modeling capabilities. The science, technology, and design efforts are closely coupled to ensure that requirements and capabilities will be consistent and meet the science goals.

Pointing control system design and performance evaluation of TPF coronagraph

NASA Astrophysics Data System (ADS)

Liu, Kuo-Chia; Blaurock, Carl; Mosier, Gary E.

2004-09-01

The Terrestrial Planet Finder (TPF) project aims to detect and characterize extra-solar Earth-like planets. The coronagraph telescope is one of the two mission concepts being studied. To reject the star flux and detect the planet flux in the visible light range, the coronagraph telescope must achieve a rejection ratio on the order of a billion to one. Dynamic jitter, introduced by environmental and on-board mechanical disturbances, degrades the optical performance, as characterized primarily by contrast ratio. The feasibility of using passive vibration isolation combined with active attitude and line-of-sight (LOS) control systems to stabilize the spacecraft and the optical components to the requisite level is being studied. The telescope is also required to slew between targets or rotate around the LOS. The slew mode control law must be designed to balance the need for efficient large-angle maneuvers while simultaneously avoiding the excitation of flexible modes in order to minimize settling time. This paper provides an overview of the current control design concept and sensor/actuator topology for TPF Coronagraph and illustrates the fine pointing performance of the telescope. This performance is primarily a function of the rejection of high-frequency dynamic disturbances, in this case due to reaction wheel disturbance forces/torques transmitted through the passive isolation stage. Trade studies between isolator force rejection and disturbance level reduction via wheel redesign are also presented to illustrate the requirements imposed on current technologies. Finally, the paper summarizes preliminary results on the slew/settle performance of the telescope.

Phase-shifting coronagraph

NASA Astrophysics Data System (ADS)

Hénault, François; Carlotti, Alexis; Vérinaud, Christophe

2017-09-01

With the recent commissioning of ground instruments such as SPHERE or GPI and future space observatories like WFIRST-AFTA, coronagraphy should probably become the most efficient tool for identifying and characterizing extrasolar planets in the forthcoming years. Coronagraphic instruments such as Phase mask coronagraphs (PMC) are usually based on a phase mask or plate located at the telescope focal plane, spreading the starlight outside the diameter of a Lyot stop that blocks it. In this communication is investigated the capability of a PMC to act as a phase-shifting wavefront sensor for better control of the achieved star extinction ratio in presence of the coronagraphic mask. We discuss the two main implementations of the phase-shifting process, either introducing phase-shifts in a pupil plane and sensing intensity variations in an image plane, or reciprocally. Conceptual optical designs are described in both cases. Numerical simulations allow for better understanding of the performance and limitations of both options, and optimizing their fundamental parameters. In particular, they demonstrate that the phase-shifting process is a bit more efficient when implemented into an image plane, and is compatible with the most popular phase masks currently employed, i.e. fourquadrants and vortex phase masks.

Speckle Noise in Highly Corrected Coronagraphs

NASA Technical Reports Server (NTRS)

Bloemhof, Eric E.

2004-01-01

Speckles in a highly corrected adaptive optic imaging system have been studied through numerical simulations and through analytic and algebraic investigations of the Fourier-optical expressions connecting pupil plane and focal plane, which simplify at high Strehl ratio. Significant insights into the behavior of speckles, and the speckle noise caused when they vary over time, have thus been gained. Such speckle noise is expected to set key limits on the sensitivity of searches for companions around other stars, including extrasolar planets. In most cases, it is advantageous to use a coronagraph of some kind to suppress the bright primary star and so enhance the dynamic range of companion searches. In the current paper, I investigate speckle behavior and its impact on speckle noise in some common coronagraphic architectures, including the classical Lyot coronagraph and the new four quadrant phase mask (FQPM) concept.

Simulations in site error estimation for direction finders

NASA Astrophysics Data System (ADS)

López, Raúl E.; Passi, Ranjit M.

1991-08-01

The performance of an algorithm for the recovery of site-specific errors of direction finder (DF) networks is tested under controlled simulated conditions. The simulations show that the algorithm has some inherent shortcomings for the recovery of site errors from the measured azimuth data. These limitations are fundamental to the problem of site error estimation using azimuth information. Several ways for resolving or ameliorating these basic complications are tested by means of simulations. From these it appears that for the effective implementation of the site error determination algorithm, one should design the networks with at least four DFs, improve the alignment of the antennas, and increase the gain of the DFs as much as it is compatible with other operational requirements. The use of a nonzero initial estimate of the site errors when working with data from networks of four or more DFs also improves the accuracy of the site error recovery. Even for networks of three DFs, reasonable site error corrections could be obtained if the antennas could be well aligned.

Spiders in Lyot Coronagraphs

NASA Astrophysics Data System (ADS)

Sivaramakrishnan, Anand; Lloyd, James P.

2005-11-01

In principle, suppression of on-axis stellar light by a coronagraph is easier on an unobscured aperture telescope than on one with an obscured aperture. Recent designs such as the apodized pupil Lyot coronagraph, the ``band-limited'' Lyot coronagraph, and several variants of phase-mask coronagraphs work best on unobscured circular aperture telescopes. These designs were developed to enable the discovery and characterization of nearby Jovian or even terrestrial exoplanets. All of today's major space-based and adaptive optics-equipped ground-based telescopes are obscured-aperture systems with a secondary mirror held in place by secondary support ``spider'' vanes. The presence of a secondary obscuration can be dealt with by ingenious coronagraph designs, but the spider vanes themselves cause diffracted light, which can hamper the search for Jovian exoplanets around nearby stars. We look at the problem of suppressing spider vane diffraction in Lyot coronagraphs, including apodized pupil and band-limited designs. We show how spider vane diffraction can be reduced drastically and in fact contained in the final coronagraphic image, within one resolution element of the geometric image of the focal plane mask's occulting spot. This makes adaptive optics coronagraphic searches for exojupiters possible with the next generation of adaptive optics systems being developed for 8-10 m class telescopes such as Gemini and the Very Large Telescopes.

Laboratory Demonstration of Axicon-Lens Coronagraph

NASA Astrophysics Data System (ADS)

Choi, Jaeho; Jea, Geonho

2018-01-01

The results of laboratory based experiments of the proposed coronagraph using axicon-lenses that is conjunction with a method of noninterferometric quantitative phase imaging for direct imaging of exoplanets is will present. The light source is passing through tiny holes drilled on the thin metal plate is used as the simulated stellar and its companions. Those diffracted light at the edge of the holes bears a similarity to the light from the bright stellar. Those images are evaginated about the optical axis after the maximum focal length of the first axicon lens. Then the evaginated images of have cut off using the motorized iris which means the suppressed the central stellar light preferentially. Various length between the holes which represent the angular distance are examined. The laboratory experimental results are shown that the axicon-lens coronagraph has feature of ability to achieve the smaller IWA than l/D and high-contrast direct imaging. The laboratory based axicon-lens coronagraph imaging support the symbolic computation results which has potential in direct imaging for finding exoplanet and various astrophysical activities. The setup of the coronagraph is simple to build and is durable to operate. Moreover it can be transported the planets images to a broadband spectrometric instrument that able to investigate the constituent of the planetary system.

Development of binary image masks for TPF-C and ground-based AO coronagraphs

NASA Astrophysics Data System (ADS)

Ge, Jian; Crepp, Justin; Vanden Heuvel, Andrew; Miller, Shane; McDavitt, Dan; Kravchenko, Ivan; Kuchner, Marc

2006-06-01

We report progress on the development of precision binary notch-filter focal plane coronagraphic masks for directly imaging Earth-like planets at visible wavelengths with the Terrestrial Planet Finder Coronagraph (TPF-C), and substellar companions at near infrared wavelengths from the ground with coronagraphs coupled to high-order adaptive optics (AO) systems. Our recent theoretical studies show that 8th-order image masks (Kuchner, Crepp & Ge 2005, KCG05) are capable of achieving unlimited dynamic range in an ideal optical system, while simultaneously remaining relatively insensitive to low-spatial-frequency optical aberrations, such as tip/tilt errors, defocus, coma, astigmatism, etc. These features offer a suite of advantages for the TPF-C by relaxing many control and stability requirements, and can also provide resistance to common practical problems associated with ground-based observations; for example, telescope flexure and low-order errors left uncorrected by the AO system due to wavefront sensor-deformable mirror lag time can leak light at significant levels. Our recent lab experiments show that prototype image masks can generate contrast levels on the order of 2x10 -6 at 3 λ/D and 6x10 -7 at 10 λ/D without deformable mirror correction using monochromatic light (Crepp et al. 2006), and that this contrast is limited primarily by light scattered by imperfections in the optics and extra diffraction created by mask construction errors. These experiments also indicate that the tilt and defocus sensitivities of high-order masks follow the theoretical predictions of Shaklan and Green 2005. In this paper, we discuss these topics as well as review our progress on developing techniques for fabricating a new series of image masks that are "free-standing", as such construction designs may alleviate some of the (mostly chromatic) problems associated with masks that rely on glass substrates for mechanical support. Finally, results obtained from our AO coronagraph

The Four-Quadrant Phase-Mask Coronagraph. I. Principle

NASA Astrophysics Data System (ADS)

Rouan, D.; Riaud, P.; Boccaletti, A.; Clénet, Y.; Labeyrie, A.

2000-11-01

We describe a new type of coronagraph, based on the principle of a phase mask as proposed by Roddier and Roddier a few years ago but using an original mask design found by one of us (D. R.), a four-quadrant binary phase mask (0, π) covering the full field of view at the focal plane. The mutually destructive interferences of the coherent light from the main source produce a very efficient nulling. The computed rejection rate of this coronagraph appears to be very high since, when perfectly aligned and phase-error free, it could in principle reduce the total amount of light from the bright source by a factor of 108, corresponding to a gain of 20 mag in brightness at the location of the first Airy ring, relative to the Airy peak. In the real world the gain is of course reduced by a strong factor, but nulling is still performing quite well, provided that the perturbation of the phase, for instance, due to the Earth's atmosphere, is efficiently corrected by adaptive optics. We show from simulations that a detection at a contrast of 10 mag between a star and a faint companion is achievable in excellent conditions, while 8 mag appears routinely feasible. This coronagraph appears less sensitive to atmospheric turbulence and has a larger dynamic range than other recently proposed nulling techniques: the phase-mask coronagraph (by Roddier and Roddier) or the Achromatic Interfero-Coronagraph (by Gay and Rabbia). We present the principle of the four-quadrant coronagraph and results of a first series of simulations. We compare those results with theoretical performances of other devices. We briefly analyze the different limitations in space or ground-based observations, as well as the issue of manufacturing the device. We also discuss several ways to improve the detection of a faint companion around a bright object. We conclude that, with respect to previous techniques, an instrument equipped with this coronagraph should have better performance and even enable the imaging of

The Terrestrial Planet Finder and Darwin Missions

NASA Technical Reports Server (NTRS)

Danchi, William C.

2004-01-01

Both in the United States and in Europe, teams of scientists and engineers are exploring the feasibility of the Terrestrial Planet Finder (TPF) and Darwin missions, which are designed to search for Earth-like planets in the habitable zone of nearby stars. In the US, the TPF Science Working Group is studying four options - small (4m by 6 m primary mirror) and large (4m by 10 m primary mirror) coronagraphs for planet detection at visible wavelengths, and structurally connected and free-flyer interferometers at thermal infrared wavelengths. The US TPF-SWG is charged with selecting an option for NASA by the end of 2006. In Europe the Darwin Terrestrial Exo-planet Advisory Team (TE- SAT) is exploring the free-flyer interferometer option only at this time. I will discuss the vurtures and difficulties of detecting and characterizing extra-solar planets in both wavelength regions as well as some of the technical challenges and progress in the past year.

Technology Plan for the Terrestrial Planet Finder Interferometer

NASA Technical Reports Server (NTRS)

Lawson, Peter R. (Editor); Dooley, Jennifer A. (Editor)

2005-01-01

The technology plan for the Terrestrial Planet Finder Interferometer (TPF-I) describes the breadth of technology development currently envisaged to enable TPF-I to search for habitable worlds around nearby stars. TPF-I is currently in Pre-Phase A (the Advanced Study Phase) of its development. For planning purposes, it is expected to enter into Phase A in 2010 and be launched sometime before 2020. TPF-I is being developed concurrently with the Terrestrial Planet Finder Coronagraph (TPF-C), whose launch is anticipated in 201 6. The missions are being designed with the capability to detect Earth-like planets should they exist in the habitable zones of Sun-like (F,G, and K) stars out to a distance of about 60 light-years. Each mission will have the starlight-suppression and spectroscopic capability to enable the characterization of extrasolar planetary atmospheres, identifying biomarkers and signs of life. TPF-C is designed as a visible-light coronagraph; TPF-I is designed as a mid-infrared formation-flying interferometer. The two missions, working together, promise to yield unambiguous detections and characterizations of Earth-like planets. The challenges of planet detections with mid-infrared formation-flying interferometry are described within this technology plan. The approach to developing the technology is described through roadmaps that lead from our current state of the art through the different phases of mission development to launch. Technology metrics and milestones are given to measure progress. The emphasis of the plan is development and acquisition of technology during pre-Phase A to establish feasibility of the mission to enter Phase A sometime around 2010. Plans beyond 2010 are outlined. The plan contains descriptions of the development of new component technology as well as testbeds that demonstrate the viability of new techniques and technology required for the mission. Starlight-suppression (nulling) and formation-flying technology are highlighted

Enhnacing the science of the WFIRST coronagraph instrument with post-processing.

NASA Astrophysics Data System (ADS)

Pueyo, Laurent; WFIRST CGI data analysis and post-processing WG

2018-01-01

We summarize the results of a three years effort investigating how to apply to the WFIRST coronagraph instrument (CGI) modern image analysis methods, now routinely used with ground-based coronagraphs. In this post we quantify the gain associated post-processing for WFIRST-CGI observing scenarios simulated between 2013 and 2017. We also show based one simulations that spectrum of planet can be confidently retrieved using these processing tools with and Integral Field Spectrograph. We then discuss our work using CGI experimental data and quantify coronagraph post-processing testbed gains. We finally introduce stability metrics that are simple to define and measure, and place useful lower bound and upper bounds on the achievable RDI post-processing contrast gain. We show that our bounds hold in the case of the testbed data.

Designs and Materials for Better Coronagraph Occulting Masks

NASA Technical Reports Server (NTRS)

Balasubramanian, Kunjithapatham

2010-01-01

New designs, and materials appropriate for such designs, are under investigation in an effort to develop coronagraph occulting masks having broad-band spectral characteristics superior to those currently employed. These designs and materials are applicable to all coronagraphs, both ground-based and spaceborne. This effort also offers potential benefits for the development of other optical masks and filters that are required (1) for precisely tailored spatial transmission profiles, (2) to be characterized by optical-density neutrality and phase neutrality (that is, to be characterized by constant optical density and constant phase over broad wavelength ranges), and/or (3) not to exhibit optical- density-dependent phase shifts. The need for this effort arises for the following reasons: Coronagraph occulting masks are required to impose, on beams of light transmitted through them, extremely precise control of amplitude and phase according to carefully designed transmission profiles. In the original application that gave rise to this effort, the concern has been to develop broad-band occulting masks for NASA s Terrestrial Planet Finder coronagraph. Until now, experimental samples of these masks have been made from high-energy-beam-sensitive (HEBS) glass, which becomes locally dark where irradiated with a high-energy electron beam, the amount of darkening depending on the electron-beam energy and dose. Precise mask profiles have been written on HEBS glass blanks by use of electron beams, and the masks have performed satisfactorily in monochromatic light. However, the optical-density and phase profiles of the HEBS masks vary significantly with wavelength; consequently, the HEBS masks perform unsatisfactorily in broad-band light. The key properties of materials to be used in coronagraph occulting masks are their extinction coefficients, their indices of refraction, and the variations of these parameters with wavelength. The effort thus far has included theoretical

SPECKLE NOISE SUBTRACTION AND SUPPRESSION WITH ADAPTIVE OPTICS CORONAGRAPHIC IMAGING

DOE Office of Scientific and Technical Information (OSTI.GOV)

Ren Deqing; Dou Jiangpei; Zhang Xi

2012-07-10

Future ground-based direct imaging of exoplanets depends critically on high-contrast coronagraph and wave-front manipulation. A coronagraph is designed to remove most of the unaberrated starlight. Because of the wave-front error, which is inherit from the atmospheric turbulence from ground observations, a coronagraph cannot deliver its theoretical performance, and speckle noise will limit the high-contrast imaging performance. Recently, extreme adaptive optics, which can deliver an extremely high Strehl ratio, is being developed for such a challenging mission. In this publication, we show that barely taking a long-exposure image does not provide much gain for coronagraphic imaging with adaptive optics. We furthermore » discuss a speckle subtraction and suppression technique that fully takes advantage of the high contrast provided by the coronagraph, as well as the wave front corrected by the adaptive optics. This technique works well for coronagraphic imaging with conventional adaptive optics with a moderate Strehl ratio, as well as for extreme adaptive optics with a high Strehl ratio. We show how to substrate and suppress speckle noise efficiently up to the third order, which is critical for future ground-based high-contrast imaging. Numerical simulations are conducted to fully demonstrate this technique.« less

Small-Grid Dithering Strategy for Improved Coronagraphic Performance with JWST

NASA Astrophysics Data System (ADS)

Lajoie, Charles-Philippe; Soummer, Remi; Pueyo, Laurent; Hines, Dean C.; Nelan, Edmund P.; JWST Coronagraphs Working Group

2015-01-01

Contrast performances for most coronagraph designs typically depend rather strongly on the accuracy of target acquisition. For JWST, target acquisition away from the center of the coronagraphs will allow for centroid measurement, which will in turn be used to command a small-angle maneuver (SAM) to accurately place the star behind the coronagraphic mask. With this approach, the SAM accuracy inherently limits the contrast performance of the coronagraphs, especially given that a reference star (or self-reference after telescope roll) might also be required. For such differential measurements, the reproducibility of the TA is therefore a very important factor. Here, we propose a novel coronagraphic observation concept whereby the reference PSF is first acquired using a standard TA, followed by coronagraphic observations on a small grid of dithered positions. Sub-pixel dithers (5-10mas each) provide a small reference PSF library that sample the possible variations in the PSF shape due to imperfect TAs. This small library can then be used for example with principal component analysis for PSF subtraction (e.g; LOCI or KLIP algorithms). Such very small dithers can be achieved with the JWST attitude control system without overhead and with higher accuracy than a SAM since they take advantage of the fine steering mirror under closed-loop fine guidance. We discuss and evaluate the performance gains from this observation scenario compared to the standard TA for MIRI Four-Quadrant Phase Mask coronagraphs and provide numerical simulations for a some astrophysical targets of interest.

Toward a Next Generation Solar Coronagraph: Diffracted Light Simulation and Test Results for a Cone Occulter with Tapered Surface

NASA Astrophysics Data System (ADS)

Yang, Heesu; Bong, Su-Chan; Cho, Kyung-Suk; Choi, Seonghwan; Park, Jongyeob; Kim, Jihun; Baek, Ji-Hye; Nah, Jakyoung; Sun, Mingzhe; Gong, Qian

2018-04-01

In a solar coronagraph, the most important component is an occulter to block the direct light from the disk of the sun Because the intensity of the solar outer corona is 10-6 to 10-10 times of that of the solar disk (\\ir), it is necessary to minimize scattering at the optical elements and diffraction at the occulter. Using a Fourier optic simulation and a stray light test, we investigated the performance of a compact coronagraph that uses an external truncated-cone occulter without an internal occulter and Lyot stop. In the simulation, the diffracted light was minimized to the order of 7.6×10-10 \\ir when the cone angle θc was about 0.39°. The performance of the cone occulter was then tested by experiment. The level of the diffracted light reached the order of 6×10-9 \\ir at θc=0.40°. This is sufficient to observe the outer corona without additional optical elements such as a Lyot stop or inner occulter. We also found the manufacturing tolerance of the cone angle to be 0.05°, the lateral alignment tolerance was 45 \\um, and the angular alignment tolerance was 0.043°. Our results suggest that the physical size of coronagraphs can be shortened significantly by using a cone occulter.

Gemini Planet Imager coronagraph testbed results

NASA Astrophysics Data System (ADS)

Sivaramakrishnan, Anand; Soummer, Rémi; Oppenheimer, Ben R.; Carr, G. Lawrence; Mey, Jacob L.; Brenner, Doug; Mandeville, Charles W.; Zimmerman, Neil; Macintosh, Bruce A.; Graham, James R.; Saddlemyer, Les; Bauman, Brian; Carlotti, Alexis; Pueyo, Laurent; Tuthill, Peter G.; Dorrer, Christophe; Roberts, Robin; Greenbaum, Alexandra

2010-07-01

The Gemini Planet Imager (GPI) is an extreme AO coronagraphic integral field unit YJHK spectrograph destined for first light on the 8m Gemini South telescope in 2011. GPI fields a 1500 channel AO system feeding an apodized pupil Lyot coronagraph, and a nIR non-common-path slow wavefront sensor. It targets detection and characterizion of relatively young (<2GYr), self luminous planets up to 10 million times as faint as their primary star. We present the coronagraph subsystem's in-lab performance, and describe the studies required to specify and fabricate the coronagraph. Coronagraphic pupil apodization is implemented with metallic half-tone screens on glass, and the focal plane occulters are deep reactive ion etched holes in optically polished silicon mirrors. Our JH testbed achieves H-band contrast below a million at separations above 5 resolution elements, without using an AO system. We present an overview of the coronagraphic masks and our testbed coronagraphic data. We also demonstrate the performance of an astrometric and photometric grid that enables coronagraphic astrometry relative to the primary star in every exposure, a proven technique that has yielded on-sky precision of the order of a milliarsecond.

Modelling exoplanet detection with the LUVOIR Coronagraph: aberration sensitivity and error tolerances

NASA Astrophysics Data System (ADS)

Juanola-Parramon, Roser; Zimmerman, Neil; Bolcar, Matthew R.; Rizzo, Maxime; Roberge, Aki

2018-01-01

The Coronagraph is a key instrument on the Large UV-Optical-Infrared (LUVOIR) Surveyor mission concept. The Apodized Pupil Lyot Coronagraph (APLC) is one of the baselined mask technologies to enable 1E10 contrast observations in the habitable zones of nearby stars. Both the LUVOIR architectures A and B present a segmented aperture as input pupil, introducing a set of random tip/tilt and piston errors, among others, that greatly affect the performance of the coronagraph instrument by increasing the wavefront errors hence reducing the instrument sensitivity. In this poster we present the latest results of the simulation of these effects for different working angle regions and discuss the achieved contrast for exoplanet detection and characterization, including simulated observations under these circumstances, setting boundaries for the tolerance of such errors.

Extra Solar Planetary Imaging Coronagraph and Science Requirements for the James Webb Telescope Observatory

NASA Technical Reports Server (NTRS)

Clampin, Mark

2004-01-01

1) Extra solar planetary imaging coronagraph. Direct detection and characterization of Jovian planets, and other gas giants, in orbit around nearby stars is a necessary precursor to Terrestrial Planet Finder 0 in order to estimate the probability of Terrestrial planets in our stellar neighborhood. Ground based indirect methods are biased towards large close in Jovian planets in solar systems unlikely io harbor Earthlike planets. Thus to estimate the relative abundances of terrestrial planets and to determine optimal observing strategies for TPF a pathfinder mission would be desired. The Extra-Solar Planetary Imaging Coronagraph (EPIC) is such a pathfinder mission. Upto 83 stellar systems are accessible with a 1.5 meter unobscured telescope and coronagraph combination located at the Earth-Sun L2 point. Incorporating radiometric and angular resolution considerations show that Jovians could be directly detected (5 sigma) in the 0.5 - 1.0 micron band outside of an inner working distance of 5/D with integration times of -10 - 100 hours per observation. The primary considerations for a planet imager are optical wavefront quality due to manufacturing, alignment, structural and thermal considerations. pointing stability and control, and manufacturability of coronagraphic masks and stops to increase the planetary-to- stellar contrast and mitigate against straylight. Previously proposed coronagraphic concepts are driven to extreme tolerances. however. we have developed and studied a mission, telescope and coronagraphic detection concept, which is achievable in the time frame of a Discovery class NASA mission. 2) Science requirements for the James Webb Space Telescope observatory. The James Webb Space Observatory (JWST) is an infrared observatory, which will be launched in 201 1 to an orbit at L2. JWST is a segmented, 18 mirror segment telescope with a diameter of 6.5 meters, and a clear aperture of 25 mA2. The telescope is designed to conduct imaging and spectroscopic

General Tool for Evaluating High-Contrast Coronagraphic Telescope Performance Error Budgets

NASA Technical Reports Server (NTRS)

Marchen, Luis F.

2011-01-01

computations. Other than this, the process is fully automated. The third process was developed based on the Terrestrial Planet Finder coronagraph Error Budget Tool, but was fully automated by using VBA code, form, and ActiveX controls.

An active coronagraph using a liquid crystal array for exoplanet imaging: principle and testing

NASA Astrophysics Data System (ADS)

Zhang, Xi; Ren, De-Qing; Zhu, Yong-Tian; Dou, Jiang-Pei

2012-05-01

High-contrast imaging coronagraphs, used for the detection of exoplanets, have always adopted passive coronagraph optical components. It is therefore impossible to actively optimize the coronagraphs to achieve their best performance. To solve this problem, we propose a novel high-contrast imaging coronagraph which combines a liquid crystal array (LCA) for active pupil apodization and a deformable mirror (DM) for phase correction. The LCA we use is an amplitude-only spatial light modulator. The LCA is well calibrated and compensates for its amplitude non-uniformity and nonlinear intensity responsivity. We measured the imaging contrasts of the coronagraph system with the LCA only and without the DM deployed. Imaging contrasts of 10-4 and 10-5 can be reached at an inner working angular distance of 2.5 and 5λ/D, respectively. A simulation shows that the phase errors on the coronagraph pupil limit the contrast performance. The contrast could be further improved if a DM is deployed to correct the phase errors induced by the LCA and coronagraph optics.

Life Finder Detectors: An Overview of Detector Technologies for Detecting Life on Other Worlds

NASA Astrophysics Data System (ADS)

Rauscher, Bernard J.; Domagal-Goldman, Shawn; Greenhouse, Matthew A.; Hsieh, Wen-Ting; McElwain, Michael W.; Moseley, Samuel H.; Noroozian, Omid; Norton, Tim; Kutyrev, Alexander; Rinehart, Stephen; stock, Joseph

2015-01-01

Future large space telescopes will seek evidence for life on other worlds by searching for spectroscopic biosignatures. Atmospheric biosignature gases include oxygen, ozone, water vapor, and methane. Non-biological gases, including carbon monoxide and carbon dioxide, are important for discriminating false positives. All of these gases imprint spectroscopic features in the UV through mid-IR that are potentially detectable using future space based coronagraphs or star shades for starlight suppression.Direct spectroscopic biosignature detection requires sensors capable of robustly measuring photon arrival rates on the order of 10 per resolution element per hour. Photon counting is required for some wavefront sensing and control approaches to achieve the requisite high contrast ratios. We review life finder detector technologies that either exist today, or are under development, that have the potential to meet these challenging requirements. We specifically highlight areas where more work or development is needed.Life finder detectors will be invaluable for a wide variety of other major science programs. Because of its cross cutting nature; UV, optical, and infrared (UVOIR) detector development features prominently in the 2010 National Research Council Decadal Survey, 'New Worlds, New Horizons in Astronomy and Astrophysics', and the NASA Cosmic Origins Program Technology Roadmap.

Haloes gone MAD: The Halo-Finder Comparison Project

NASA Astrophysics Data System (ADS)

Knebe, Alexander; Knollmann, Steffen R.; Muldrew, Stuart I.; Pearce, Frazer R.; Aragon-Calvo, Miguel Angel; Ascasibar, Yago; Behroozi, Peter S.; Ceverino, Daniel; Colombi, Stephane; Diemand, Juerg; Dolag, Klaus; Falck, Bridget L.; Fasel, Patricia; Gardner, Jeff; Gottlöber, Stefan; Hsu, Chung-Hsing; Iannuzzi, Francesca; Klypin, Anatoly; Lukić, Zarija; Maciejewski, Michal; McBride, Cameron; Neyrinck, Mark C.; Planelles, Susana; Potter, Doug; Quilis, Vicent; Rasera, Yann; Read, Justin I.; Ricker, Paul M.; Roy, Fabrice; Springel, Volker; Stadel, Joachim; Stinson, Greg; Sutter, P. M.; Turchaninov, Victor; Tweed, Dylan; Yepes, Gustavo; Zemp, Marcel

2011-08-01

We present a detailed comparison of fundamental dark matter halo properties retrieved by a substantial number of different halo finders. These codes span a wide range of techniques including friends-of-friends, spherical-overdensity and phase-space-based algorithms. We further introduce a robust (and publicly available) suite of test scenarios that allow halo finder developers to compare the performance of their codes against those presented here. This set includes mock haloes containing various levels and distributions of substructure at a range of resolutions as well as a cosmological simulation of the large-scale structure of the universe. All the halo-finding codes tested could successfully recover the spatial location of our mock haloes. They further returned lists of particles (potentially) belonging to the object that led to coinciding values for the maximum of the circular velocity profile and the radius where it is reached. All the finders based in configuration space struggled to recover substructure that was located close to the centre of the host halo, and the radial dependence of the mass recovered varies from finder to finder. Those finders based in phase space could resolve central substructure although they found difficulties in accurately recovering its properties. Through a resolution study we found that most of the finders could not reliably recover substructure containing fewer than 30-40 particles. However, also here the phase-space finders excelled by resolving substructure down to 10-20 particles. By comparing the halo finders using a high-resolution cosmological volume, we found that they agree remarkably well on fundamental properties of astrophysical significance (e.g. mass, position, velocity and peak of the rotation curve). We further suggest to utilize the peak of the rotation curve, vmax, as a proxy for mass, given the arbitrariness in defining a proper halo edge. Airport code for Madrid, Spain

Effect of DM Actuator Errors on the WFIRST/AFTA Coronagraph Contrast Performance

NASA Technical Reports Server (NTRS)

Sidick, Erkin; Shi, Fang

2015-01-01

The WFIRST/AFTA 2.4 m space telescope currently under study includes a stellar coronagraph for the imaging and the spectral characterization of extrasolar planets. The coronagraph employs two sequential deformable mirrors (DMs) to compensate for phase and amplitude errors in creating dark holes. DMs are critical elements in high contrast coronagraphs, requiring precision and stability measured in picometers to enable detection of Earth-like exoplanets. Working with a low-order wavefront-sensor the DM that is conjugate to a pupil can also be used to correct low-order wavefront drift during a scientific observation. However, not all actuators in a DM have the same gain. When using such a DM in low-order wavefront sensing and control subsystem, the actuator gain errors introduce high-spatial frequency errors to the DM surface and thus worsen the contrast performance of the coronagraph. We have investigated the effects of actuator gain errors and the actuator command digitization errors on the contrast performance of the coronagraph through modeling and simulations, and will present our results in this paper.

Terrestrial Planet Finder: science overview

NASA Technical Reports Server (NTRS)

Unwin, Stephen C.; Beichman, C. A.

2004-01-01

The Terrestrial Planet Finder (TPF) seeks to revolutionize our understanding of humanity's place in the universe - by searching for Earth-like planets using reflected light, or thermal emission in the mid-infrared. Direct detection implies that TPF must separate planet light from glare of the nearby star, a technical challenge which has only in recent years been recognized as surmountable. TPF will obtain a low-resolution spectra of each planets it detects, providing some of its basic physical characteristics and its main atmospheric constituents, thereby allowing us to assess the likelihood that habitable conditions exist there. NASA has decided the scientific importance of this research is so high that TPF will be pursued as two complementary space observatories: a visible-light coronagraph and a mid-infrared formation flying interferometer. The combination of spectra from both wavebands is much more valuable than either taken separately, and it will allow a much fuller understanding of the wide diversity of planetary atmospheres that may be expected to exist. Measurements across a broad wavelength range will yield not only physical properties such as size and albedo, but will also serve as the foundations of a reliable and robust assessment of habitability and the presence of life.

Dynamic testbed demonstration of WFIRST coronagraph low order wavefront sensing and control (LOWFS/C)

NASA Astrophysics Data System (ADS)

Shi, Fang; Cady, Eric; Seo, Byoung-Joon; An, Xin; Balasubramanian, Kunjithapatham; Kern, Brian; Lam, Raymond; Marx, David; Moody, Dwight; Mejia Prada, Camilo; Patterson, Keith; Poberezhskiy, Ilya; Shields, Joel; Sidick, Erkin; Tang, Hong; Trauger, John; Truong, Tuan; White, Victor; Wilson, Daniel; Zhou, Hanying

2017-09-01

To maintain the required performance of WFIRST Coronagraph in a realistic space environment, a Low Order Wavefront Sensing and Control (LOWFS/C) subsystem is necessary. The LOWFS/C uses a Zernike wavefront sensor (ZWFS) with the phase shifting disk combined with the starlight rejecting occulting mask. For wavefront error corrections, WFIRST LOWFS/C uses a fast steering mirror (FSM) for line-of-sight (LoS) correction, a focusing mirror for focus drift correction, and one of the two deformable mirrors (DM) for other low order wavefront error (WFE) correction. As a part of technology development and demonstration for WFIRST Coronagraph, a dedicated Occulting Mask Coronagraph (OMC) testbed has been built and commissioned. With its configuration similar to the WFIRST flight coronagraph instrument the OMC testbed consists of two coronagraph modes, Shaped Pupil Coronagraph (SPC) and Hybrid Lyot Coronagraph (HLC), a low order wavefront sensor (LOWFS), and an optical telescope assembly (OTA) simulator which can generate realistic LoS drift and jitter as well as low order wavefront error that would be induced by the WFIRST telescope's vibration and thermal changes. In this paper, we will introduce the concept of WFIRST LOWFS/C, describe the OMC testbed, and present the testbed results of LOWFS sensor performance. We will also present our recent results from the dynamic coronagraph tests in which we have demonstrated of using LOWFS/C to maintain the coronagraph contrast with the presence of WFIRST-like line-of-sight and low order wavefront disturbances.

Physical and Mathematical Questions on Signal Processing in Multibase Phase Direction Finders

NASA Astrophysics Data System (ADS)

Denisov, V. P.; Dubinin, D. V.; Meshcheryakov, A. A.

2018-02-01

Questions on improving the accuracy of multiple-base phase direction finders by rejecting anomalously large errors in the process of resolving the measurement ambiguities are considered. A physical basis is derived and calculated relationships characterizing the efficiency of the proposed solutions are obtained. Results of a computer simulation of a three-base direction finder are analyzed, along with field measurements of a three-base direction finder along near-ground paths.

Toward a Next Generation Solar Coronagraph: Development of a Compact Diagnostic Coronagraph on the ISS

NASA Astrophysics Data System (ADS)

Cho, K.-S.; Bong, S.-C.; Choi, S.; Yang, H.; Kim, J.; Baek, J.-H.; Park, J.; Lim, E.-K.; Kim, R.-S.; Kim, S.; Kim, Y.-H.; Park, Y.-D.; Clarke, S. W.; Davila, J. M.; Gopalswamy, N.; Nakariakov, V. M.; Li, B.; Pinto, R. F.

2017-10-01

The Korea Astronomy and Space Science Institute plans to develop a coronagraph in collaboration with National Aeronautics and Space Administration (NASA) and to install it on the International Space Station (ISS). The coronagraph is an externally occulted one-stage coronagraph with a field of view from 3 to 15 solar radii. The observation wavelength is approximately 400 nm, where strong Fraunhofer absorption lines from the photosphere experience thermal broadening and Doppler shift through scattering by coronal electrons. Photometric filter observations around this band enable the estimation of 2D electron temperature and electron velocity distribution in the corona. Together with a high time cadence (<12 min) of corona images used to determine the geometric and kinematic parameters of coronal mass ejections, the coronagraph will yield the spatial distribution of electron density by measuring the polarized brightness. For the purpose of technical demonstration, we intend to observe the total solar eclipse in August 2017 with the filter system and to perform a stratospheric balloon experiment in 2019 with the engineering model of the coronagraph. The coronagraph is planned to be installed on the ISS in 2021 for addressing a number of questions (e.g., coronal heating and solar wind acceleration) that are both fundamental and practically important in the physics of the solar corona and of the heliosphere.

Astronomical Near-neighbor Detection with a Four-quadrant Phase Mask (FQPM) Coronagraph

NASA Technical Reports Server (NTRS)

Haguenauer, Pierre; Serabyn, Eugene; Mennesson, Bertrand; Wallace, James K.; Gappinger, Robert O.; Troy, Mitchell; Bloemhof, Eric E.; Moore, Jim; Koresko, Chris D.

2006-01-01

Direct detection of planets around nearby stars requires the development of high-contrast imaging techniques, because of their very different respective fluxes. We thus investigated the innovative coronagraphic approach based on the use of a four-quadrant phase mask (FQPM). Simulations showed that, combined with high-level wavefront correction on an unobscured off-axis section of a large telescope, this method allows high-contrast imaging very close to stars, with detection capability superior to that of a traditional coronagraph. A FQPM instrument was thus built to test the feasibility of near-neighbor observations with our new off-axis approach on a ground-based telescope. In June 2005, we deployed our instrument to the Palomar 200-inch telescope, using existing facilities as much as possible for rapid implementation. In these initial observations, using data processing techniques specific to FQPM coronagraphs, we reached extinction levels of the order of 200:1. Here we discuss our simulations and on-sky results obtained so far.

Post-coronagraphic tip-tilt sensing for vortex phase masks: The QACITS technique

NASA Astrophysics Data System (ADS)

Huby, E.; Baudoz, P.; Mawet, D.; Absil, O.

2015-12-01

Context. Small inner working angle coronagraphs, such as the vortex phase mask, are essential to exploit the full potential of ground-based telescopes in the context of exoplanet detection and characterization. However, the drawback of this attractive feature is a high sensitivity to pointing errors, which degrades the performance of the coronagraph. Aims: We propose a tip-tilt retrieval technique based on the analysis of the final coronagraphic image, hereafter called Quadrant Analysis of Coronagraphic Images for Tip-tilt Sensing (QACITS). Methods: Under the assumption of small phase aberrations, we show that the behavior of the vortex phase mask can be simply described from the entrance pupil to the Lyot stop plane with Zernike polynomials. This convenient formalism is used to establish the theoretical basis of the QACITS technique. We performed simulations to demonstrate the validity and limits of the technique, including the case of a centrally obstructed pupil. Results: The QACITS technique principle is validated with experimental results in the case of an unobstructed circular aperture, as well as simulations in presence of a central obstruction. The typical configuration of the Keck telescope (24% central obstruction) has been simulated with additional high order aberrations. In these conditions, our simulations show that the QACITS technique is still adapted to centrally obstructed pupils and performs tip-tilt retrieval with a precision of 5 × 10-2λ/D when wavefront errors amount to λ/ 14 rms and 10-2λ/D for λ/ 70 rms errors (with λ the wavelength and D the pupil diameter). Conclusions: We have developed and demonstrated a tip-tilt sensing technique for vortex coronagraphs. The implementation of the QACITS technique is based on the analysis of the scientific image and does not require any modification of the original setup. Current facilities equipped with a vortex phase mask can thus directly benefit from this technique to improve the contrast

Coronagraphic Wavefront Control for the ATLAST-9.2m Telescope

NASA Technical Reports Server (NTRS)

Lyon, RIchard G.; Oegerle, William R.; Feinberg, Lee D.; Bolcar, Matthew R.; Dean, Bruce H.; Mosier, Gary E.; Postman, Marc

2010-01-01

The Advanced Technology for Large Aperture Space Telescope (ATLAST) concept was assessed as one of the NASA Astrophysics Strategic Mission Concepts (ASMC) studies. Herein we discuss the 9.2-meter diameter segmented aperture version and its wavefront sensing and control (WFSC) with regards to coronagraphic detection and spectroscopic characterization of exoplanets. The WFSC would consist of at least two levels of sensing and control: (i) an outer coarser level of sensing and control to phase and control the segments and secondary mirror in a manner similar to the James Webb Space Telescope but operating at higher temporal bandwidth, and (ii) an inner, coronagraphic instrument based, fine level of sensing and control for both amplitude and wavefront errors operating at higher temporal bandwidths. The outer loop would control rigid-body actuators on the primary and secondary mirrors while the inner loop would control one or more segmented deformable mirror to suppress the starlight within the coronagraphic field-of view. Herein we discuss the visible nulling coronagraph (VNC) and the requirements it levies on wavefront sensing and control and show the results of closed-loop simulations to assess performance and evaluate the trade space of system level stability versus control bandwidth.

Coronagraph Focal-Plane Phase Masks Based on Photonic Crystal Technology: Recent Progress and Observational Strategy

NASA Technical Reports Server (NTRS)

Murakami, Naoshi; Nishikawa, Jun; Sakamoto, Moritsugu; Ise, Akitoshi; Oka, Kazuhiko; Baba, Naoshi; Murakami, Hiroshi; Tamura, Motohide; Traub, Wesley A.; Mawet, Dimitri;

Wavefront control performance modeling with WFIRST shaped pupil coronagraph testbed

NASA Astrophysics Data System (ADS)

Zhou, Hanying; Nemati, Bijian; Krist, John; Cady, Eric; Kern, Brian; Poberezhskiy, Ilya

2017-09-01

NASA's WFIRST mission includes a coronagraph instrument (CGI) for direct imaging of exoplanets. Significant improvement in CGI model fidelity has been made recently, alongside a testbed high contrast demonstration in a simulated dynamic environment at JPL. We present our modeling method and results of comparisons to testbed's high order wavefront correction performance for the shaped pupil coronagraph. Agreement between model prediction and testbed result at better than a factor of 2 has been consistently achieved in raw contrast (contrast floor, chromaticity, and convergence), and with that comes good agreement in contrast sensitivity to wavefront perturbations and mask lateral shear.

An H-band Vector Vortex Coronagraph for the Subaru Coronagraphic Extreme-adaptive Optics System

NASA Astrophysics Data System (ADS)

Kühn, J.; Serabyn, E.; Lozi, J.; Jovanovic, N.; Currie, T.; Guyon, O.; Kudo, T.; Martinache, F.; Liewer, K.; Singh, G.; Tamura, M.; Mawet, D.; Hagelberg, J.; Defrere, D.

2018-03-01

The vector vortex is a coronagraphic imaging mode of the recently commissioned Subaru Coronagraphic Extreme Adaptive Optics (SCExAO) platform on the 8 m Subaru Telescope. This multi-purpose high-contrast visible and near-infrared (R- to K-band) instrument is not only intended to serve as a VLT-class “planet-imager” instrument in the northern hemisphere, but also to operate as a technology demonstration testbed ahead of the ELTs-era, with a particular emphasis on small inner-working angle (IWA) coronagraphic capabilities. The given priority to small-IWA imaging led to the early design choice to incorporate focal-plane phase-mask coronagraphs. In this context, a test H-band vector vortex liquid crystal polymer waveplate was provided to SCExAO, to allow a one-to-one comparison of different small-IWA techniques on the same telescope instrument, before considering further steps. Here we present a detailed overview of the vector vortex coronagraph, from its installation and performances on the SCExAO optical bench, to the on-sky results in the extreme AO regime, as of late 2016/early 2017. To this purpose, we also provide a few recent on-sky imaging examples, notably high-contrast ADI detection of the planetary-mass companion κ Andromedae b, with a signal-to-noise ratio above 100 reached in less than 10 mn exposure time.

Fine Guidance Sensing for Coronagraphic Observatories

NASA Technical Reports Server (NTRS)

Brugarolas, Paul; Alexander, James W.; Trauger, John T.; Moody, Dwight C.

2011-01-01

Three options have been developed for Fine Guidance Sensing (FGS) for coronagraphic observatories using a Fine Guidance Camera within a coronagraphic instrument. Coronagraphic observatories require very fine precision pointing in order to image faint objects at very small distances from a target star. The Fine Guidance Camera measures the direction to the target star. The first option, referred to as Spot, was to collect all of the light reflected from a coronagraph occulter onto a focal plane, producing an Airy-type point spread function (PSF). This would allow almost all of the starlight from the central star to be used for centroiding. The second approach, referred to as Punctured Disk, collects the light that bypasses a central obscuration, producing a PSF with a punctured central disk. The final approach, referred to as Lyot, collects light after passing through the occulter at the Lyot stop. The study includes generation of representative images for each option by the science team, followed by an engineering evaluation of a centroiding or a photometric algorithm for each option. After the alignment of the coronagraph to the fine guidance system, a "nulling" point on the FGS focal point is determined by calibration. This alignment is implemented by a fine alignment mechanism that is part of the fine guidance camera selection mirror. If the star images meet the modeling assumptions, and the star "centroid" can be driven to that nulling point, the contrast for the coronagraph will be maximized.

Short Wave Direction Finders

DTIC Science & Technology

1960-05-23

or designing direction finders. In CIApter 1, written by candidate of technical sciences, lec- turer O.V.Belavin, are considered direction finding...direction finding methods. In the design of radio direction finders with long base, qustioons arise of the advantageous choice of an antenna system, of the...dieeoticfindors, and reoommadat4ons on the design of radio direetion finders from the point of view of reduting the asaratu errors. og-’eae re~.o dkitctlon

Coronagraph for astronomical imaging and spectrophotometry

NASA Technical Reports Server (NTRS)

Vilas, Faith; Smith, Bradford A.

1987-01-01

A coronagraph designed to minimize scattered light in astronomical observations caused by the structure of the primary mirror, secondary mirror, and secondary support structure of a Cassegrainian telescope is described. Direct (1:1) and reducing (2.7:1) imaging of astronomical fields are possible. High-quality images are produced. The coronagraph can be used with either a two-dimensional charge-coupled device or photographic film camera. The addition of transmission dispersing optics converts the coronagraph into a low-resolution spectrograph. The instrument is modular and portable for transport to different observatories.

Study of a coronagraphic mask using evanescent waves.

PubMed

Buisset, Christophe; Rabbia, Yves; Lepine, Thierry; Alagao, Mary-Angelie; Ducrot, Elsa; Poshyachinda, Saran; Soonthornthum, Boonrucksar

2017-04-03

The evanescent wave coronagraph (EvWaCo) is a specific kind of band-limited coronagraph using the frustrated total internal reflection phenomenon to produce the coronagraphic effect (removing starlight from the image plane in order to make the stellar environment detectable). In this paper, we present a theoretical and experimental study of the EvWaCo coronagraphic mask. First, we calculate the theoretical transmission and we show that this mask is partially achromatic. Then, we present the experimental results obtained in unpolarized light at the wavelength λ≈900 nm and relative spectral bandwidth Δλ/λ≈6%. In particular, we show that the coronagraph provides a contrast down to a few 10^-6 at an angular distance of about ten Airy radii.

Simulation-Based Verification of Autonomous Controllers via Livingstone PathFinder

NASA Technical Reports Server (NTRS)

Lindsey, A. E.; Pecheur, Charles

2004-01-01

AI software is often used as a means for providing greater autonomy to automated systems, capable of coping with harsh and unpredictable environments. Due in part to the enormous space of possible situations that they aim to addrs, autonomous systems pose a serious challenge to traditional test-based verification approaches. Efficient verification approaches need to be perfected before these systems can reliably control critical applications. This publication describes Livingstone PathFinder (LPF), a verification tool for autonomous control software. LPF applies state space exploration algorithms to an instrumented testbed, consisting of the controller embedded in a simulated operating environment. Although LPF has focused on NASA s Livingstone model-based diagnosis system applications, the architecture is modular and adaptable to other systems. This article presents different facets of LPF and experimental results from applying the software to a Livingstone model of the main propulsion feed subsystem for a prototype space vehicle.

FACTOR FINDER CD-ROM

EPA Science Inventory

The Factor Finder CD-ROM is a user-friendly, searchable tool used to locate exposure factors and sociodemographic data for user-defined populations. Factor Finder improves the exposure assessors and risk assessors (etc.) ability to efficiently locate exposure-related informatio...

A coronagraph for operational space weather predication

NASA Astrophysics Data System (ADS)

Middleton, Kevin F.

2017-09-01

Accurate prediction of the arrival of solar wind phenomena, in particular coronal mass ejections (CMEs), at Earth, and possibly elsewhere in the heliosphere, is becoming increasingly important given our ever-increasing reliance on technology. The potentially severe impact on human technological systems of such phenomena is termed space weather. A coronagraph is arguably the instrument that provides the earliest definitive evidence of CME eruption; from a vantage point on or near the Sun-Earth line, a coronagraph can provide near-definitive identification of an Earth-bound CME. Currently, prediction of CME arrival is critically dependent on ageing science coronagraphs whose design and operation were not optimized for space weather services. We describe the early stages of the conceptual design of SCOPE (the Solar Coronagraph for OPErations), optimized to support operational space weather services.

Laboratory and On-Sky Validation of the Shaped Pupil Coronagraph's Sensitivity to Low-Order Aberrations with Active Wavefront Control

NASA Technical Reports Server (NTRS)

Currie, Thayne; Lozi, Julien; Guyon, Olivier; Brandt, Timothy; Chilcote, Jeffrey; Skaf, Nour; Pathak, Prashant; Kasdin, N. Jeremy; Kuhn, Jonas; Groff, Tyler D.;

Solar Energetic Particle Warnings from a Coronagraph

NASA Technical Reports Server (NTRS)

St Cyr, O. C.; Posner, A.; Burkepile, J. T.

2017-01-01

We report here the concept of using near-real time observations from a coronagraph to provide early warning of a fast coronal mass ejection (CME) and the possible onset of a solar energetic particle (SEP) event. The 1 January 2016, fast CME, and its associated SEP event are cited as an example. The CME was detected by the ground-based K-Cor coronagraph at Mauna Loa Solar Observatory and by the SOHO Large Angle and Spectrometric Coronagraph. The near-real-time availability of the high-cadence K-Cor observations in the low corona leads to an obvious question: Why has no one attempted to use a coronagraph as an early warning device for SEP events? The answer is that the low image cadence and the long latency of existing spaceborne coronagraphs make them valid for archival studies but typically unsuitable for near-real-time forecasting. The January 2016 event provided favorable CME viewing geometry and demonstrated that the primary component of a prototype ground-based system for SEP warnings is available several hours on most days. We discuss how a conceptual CME-based warning system relates to other techniques, including an estimate of the relative SEP warning times, and how such a system might be realized.

PARALLEL HOP: A SCALABLE HALO FINDER FOR MASSIVE COSMOLOGICAL DATA SETS

DOE Office of Scientific and Technical Information (OSTI.GOV)

Skory, Stephen; Turk, Matthew J.; Norman, Michael L.

2010-11-15

Modern N-body cosmological simulations contain billions (10{sup 9}) of dark matter particles. These simulations require hundreds to thousands of gigabytes of memory and employ hundreds to tens of thousands of processing cores on many compute nodes. In order to study the distribution of dark matter in a cosmological simulation, the dark matter halos must be identified using a halo finder, which establishes the halo membership of every particle in the simulation. The resources required for halo finding are similar to the requirements for the simulation itself. In particular, simulations have become too extensive to use commonly employed halo finders, suchmore » that the computational requirements to identify halos must now be spread across multiple nodes and cores. Here, we present a scalable-parallel halo finding method called Parallel HOP for large-scale cosmological simulation data. Based on the halo finder HOP, it utilizes message passing interface and domain decomposition to distribute the halo finding workload across multiple compute nodes, enabling analysis of much larger data sets than is possible with the strictly serial or previous parallel implementations of HOP. We provide a reference implementation of this method as a part of the toolkit {sup yt}, an analysis toolkit for adaptive mesh refinement data that include complementary analysis modules. Additionally, we discuss a suite of benchmarks that demonstrate that this method scales well up to several hundred tasks and data sets in excess of 2000{sup 3} particles. The Parallel HOP method and our implementation can be readily applied to any kind of N-body simulation data and is therefore widely applicable.« less

Vector scattering analysis of TPF coronagraph pupil masks

NASA Astrophysics Data System (ADS)

Ceperley, Daniel P.; Neureuther, Andrew R.; Lieber, Michael D.; Kasdin, N. Jeremy; Shih, Ta-Ming

2004-10-01

Rigorous finite-difference time-domain electromagnetic simulation is used to simulate the scattering from proto-typical pupil mask cross-section geometries and to quantify the differences from the normally assumed ideal on-off behavior. Shaped pupil plane masks are a promising technology for the TPF coronagraph mission. However the stringent requirements placed on the optics require that the detailed behavior of the edge-effects of these masks be examined carefully. End-to-end optical system simulation is essential and an important aspect is the polarization and cross-section dependent edge-effects which are the subject of this paper. Pupil plane masks are similar in many respects to photomasks used in the integrated circuit industry. Simulation capabilities such as the FDTD simulator, TEMPEST, developed for analyzing polarization and intensity imbalance effects in nonplanar phase-shifting photomasks, offer a leg-up in analyzing coronagraph masks. However, the accuracy in magnitude and phase required for modeling a chronograph system is extremely demanding and previously inconsequential errors may be of the same order of magnitude as the physical phenomena under study. In this paper, effects of thick masks, finite conductivity metals, and various cross-section geometries on the transmission of pupil-plane masks are illustrated. Undercutting the edge shape of Cr masks improves the effective opening width to within λ/5 of the actual opening but TE and TM polarizations require opposite compensations. The deviation from ideal is examined at the reference plane of the mask opening. Numerical errors in TEMPEST, such as numerical dispersion, perfectly matched layer reflections, and source haze are also discussed along with techniques for mitigating their impacts.

Laboratory performance of the shaped pupil coronagraphic architecture for the WFIRST/AFTA coronagraph

NASA Astrophysics Data System (ADS)

Cady, Eric; Mejia Prada, Camilo; An, Xin; Balasubramanian, Kunjithapatham; Diaz, Rosemary; Kasdin, N. Jeremy; Kern, Brian; Kuhnert, Andreas; Nemati, Bijan; Patterson, Keith; Poberezhskiy, Ilya; Riggs, A. J. Eldorado; Ryan, Daniel; Zhou, Hanying; Zimmer, Robert; Zimmerman, Neil T.

2015-09-01

One of the two primary architectures being tested for the WFIRST-AFTA coronagraph instrument is the shaped pupil coronagraph, which uses a binary aperture in a pupil plane to create localized regions of high contrast in a subsequent focal plane. The aperture shapes are determined by optimization, and can be designed to work in the presence of secondary obscurations and spiders - an important consideration for coronagraphy with WFIRST-AFTA. We present the current performance of the shaped pupil testbed, including the results of AFTA Milestone 2, in which ≍ 6 × 10-9 contrast was achieved in three independent runs starting from a neutral setting.

Laboratory Performance of the Shaped Pupil Coronagraphic Architecture for the WFIRST-AFTA Coronagraph

NASA Technical Reports Server (NTRS)

Cady, Eric; Mejia Prada, Camilo; An, Xin; Balasubramanian, Kunjithapatha; Diaz, Rosemary; Kasdin, N. Jeremy; Kern, Brian; Kuhnert, Andreas; Nemati, Bijan; Patterson, Keith;

The ExtraSolar Planetary Imaging Coronagraph

NASA Astrophysics Data System (ADS)

Clampin, M.; Lyon, R.

2010-10-01

The Extrasolar Planetary Imaging Coronagraph (EPIC) is a 1.65-m telescope employing a visible nulling coronagraph (VNC) to deliver high-contrast images of extrasolar system architectures. EPIC will survey the architectures of exosolar systems, and investigate the physical nature of planets in these solar systems. EPIC will employ a Visible Nulling Coronagraph (VNC), featuring an inner working angle of ≤2λ/D, and offers the ideal balance between performance and feasibility of implementation, while not sacrificing science return. The VNC does not demand unrealistic thermal stability from its telescope optics, achieving its primary mirror surface figure requires no new technology, and pointing stability is within state of the art. The EPIC mission will be launched into a drift-away orbit with a five-year mission lifetime.

The JWST/NIRCam Coronagraph: Mask Design and Fabrication

NASA Technical Reports Server (NTRS)

Krista, John E.; Balasubramanian, Kunjithapatha; Beichman, Charles A.; Echternach, Pierre M.; Green, Joseph J.; Liewer, Kurt M.; Muller, Richard E.; Serabyn, Eugene; Shaklan, Stuart B.; Trauger, John T.;

WFIRST: Coronagraph Systems Engineering and Performance Budgets

NASA Astrophysics Data System (ADS)

Poberezhskiy, Ilya; cady, eric; Frerking, Margaret A.; Kern, Brian; Nemati, Bijan; Noecker, Martin; Seo, Byoung-Joon; Zhao, Feng; Zhou, Hanying

2018-01-01

The WFIRST coronagraph instrument (CGI) will be the first in-space coronagraph using active wavefront control to directly image and characterize mature exoplanets and zodiacal disks in reflected starlight. For CGI systems engineering, including requirements development, CGI performance is predicted using a hierarchy of performance budgets to estimate various noise components — spatial and temporal flux variations — that obscure exoplanet signals in direct imaging and spectroscopy configurations. These performance budgets are validated through a robust integrated modeling and testbed model validation efforts.We present the performance budgeting framework used by WFIRST for the flow-down of coronagraph science requirements, mission constraints, and observatory interfaces to measurable instrument engineering parameters.

End-to-end Coronagraphic Modeling Including a Low-order Wavefront Sensor

NASA Technical Reports Server (NTRS)

Krist, John E.; Trauger, John T.; Unwin, Stephen C.; Traub, Wesley A.

2012-01-01

To evaluate space-based coronagraphic techniques, end-to-end modeling is necessary to simulate realistic fields containing speckles caused by wavefront errors. Real systems will suffer from pointing errors and thermal and motioninduced mechanical stresses that introduce time-variable wavefront aberrations that can reduce the field contrast. A loworder wavefront sensor (LOWFS) is needed to measure these changes at a sufficiently high rate to maintain the contrast level during observations. We implement here a LOWFS and corresponding low-order wavefront control subsystem (LOWFCS) in end-to-end models of a space-based coronagraph. Our goal is to be able to accurately duplicate the effect of the LOWFS+LOWFCS without explicitly evaluating the end-to-end model at numerous time steps.

External occulter laboratory demonstrator for the forthcoming formation flying coronagraphs.

PubMed

Landini, Federico; Vives, Sébastien; Venet, Mélanie; Romoli, Marco; Guillon, Christophe; Fineschi, Silvano

2011-12-20

The design and optimization of the external occulter geometry is one of the most discussed topics among solar coronagraph designers. To improve the performance of future coronagraphs and to stretch their inner fields of view toward the solar limb, the new concept of coronagraphs in formation flight has been introduced in the scientific debate. Solar coronagraphs in formation flight require several mechanical and technological constraints to be met, mainly due to the large dimension of the occulter and to the spacecraft's reciprocal alignment. The occulter edge requires special attention to minimize diffraction while being compatible with the handling and integrating of large delicate space components. Moreover, it is practically impossible to set up a full-scale model for laboratory tests. This article describes the design and laboratory tests on a demonstrator for a coronagraph to be operated in formation flight. The demonstrator is based on the principle of the linear edge, thus the presented results cannot be directly extrapolated to the case of the flying circular occulter. Nevertheless, we are able to confirm the results of other authors investigating on smaller coronagraphs and provide further information on the geometry and tolerances of the optimization system. The described work is one of the results of the ESA STARTIGER program on formation flying coronagraphs ["The STARTIGER's demonstrators: toward a new generation of formation flying solar coronagraphs," in 2010 International Conference on Space Optics (ICSO) (2010), paper 39].

Technology Development Towards a Flight Coronagraph

NASA Astrophysics Data System (ADS)

Siegler, N.

2014-03-01

The first biosignatures in the spectrum of an Earth-like planet will be measured by a spectrometer aboard a future space telescope. But before the planet's light can be captured and characterized, the host star's light may have to be suppressed by a factor of about 10 billion. One of these instruments may likely be an internal coronagraph working at visible wavelengths. Thanks to both a potential funding wedge in FY17 created by a JWST ramp-down to launch and a "gift" 2.4m telescope from the NRO being converted into a possible "AFTA-WFIRST" mission, NASA has already begun funding technology development towards flight coronagraphs that will take astronomers one step closer towards their goal. This talk will focus on the technology development underway and planned over the next few years for a flight coronagraph on an AFTA-WFIRST mission.

Common-Path Wavefront Sensing for Advanced Coronagraphs

NASA Technical Reports Server (NTRS)

Wallace, J. Kent; Serabyn, Eugene; Mawet, Dimitri

2012-01-01

Imaging of faint companions around nearby stars is not limited by either intrinsic resolution of a coronagraph/telescope system, nor is it strictly photon limited. Typically, it is both the magnitude and temporal variation of small phase and amplitude errors imparted to the electric field by elements in the optical system which will limit ultimate performance. Adaptive optics systems, particularly those with multiple deformable mirrors, can remove these errors, but they need to be sensed in the final image plane. If the sensing system is before the final image plane, which is typical for most systems, then the non-common path optics between the wavefront sensor and science image plane will lead to un-sensed errors. However, a new generation of high-performance coronagraphs naturally lend themselves to wavefront sensing in the final image plane. These coronagraphs and the wavefront sensing will be discussed, as well as plans for demonstrating this with a high-contrast system on the ground. Such a system will be a key system-level proof for a future space-based coronagraph mission, which will also be discussed.

Introduction to IdentiFINDERs

DOE Office of Scientific and Technical Information (OSTI.GOV)

Rees, Brian G.

These are slides from a presentation. The identiFINDER provides information on radiation levels. It can automatically identify isotopes in its library. It can save spectra for transfer to a computer, and has a 4-8 hour battery life. The following is covered: an overview, operating modes, getting started, finder mode, search, identification mode, dose & rate, warning & alarm, options (ultra LGH), options (identifinder2), and general procedure.

An eight-octant phase-mask coronagraph for the Subaru coronagraphic extreme AO (SCExAO) system: system design and expected performance

NASA Astrophysics Data System (ADS)

Murakami, Naoshi; Guyon, Olivier; Martinache, Frantz; Matsuo, Taro; Yokochi, Kaito; Nishikawa, Jun; Tamura, Motohide; Kurokawa, Takashi; Baba, Naoshi; Vogt, Frédéric; Garrel, Vincent; Yoshikawa, Takashi

2010-07-01

An eight-octant phase-mask (EOPM) coronagraph is one of the highest performance coronagraphic concepts, and attains simultaneously high throughput, small inner working angle, and large discovery space. However, its application to ground-based telescopes such as the Subaru Telescope is challenging due to pupil geometry (thick spider vanes and large central obstruction) and residual tip-tilt errors. We show that the Subaru Coronagraphic Extreme Adaptive Optics (SCExAO) system, scheduled to be installed onto the Subaru Telescope, includes key technologies which can solve these problems. SCExAO uses a spider removal plate which translates four parts of the pupil with tilted plane parallel plates. The pupil central obstruction can be removed by a pupil remapping system similar to the PIAA optics already in the SCExAO system, which could be redesigned with no amplitude apodization. The EOPM is inserted in the focal plane to divide a stellar image into eight-octant regions, and introduces a π-phase difference between adjacent octants. This causes a self-destructive interference inside the pupil area on a following reimaged pupil plane. By using a reflective mask instead of a conventional opaque Lyot stop, the stellar light diffracted outside the pupil can be used for a coronagraphic low-order wave-front sensor to accurately measure and correct tip-tilt errors. A modified inverse-PIAA system, located behind the reimaged pupil plane, is used to remove off-axis aberrations and deliver a wide field of view. We show that this EOPM coronagraph architecture enables high contrast imaging at small working angle on the Subaru Telescope. Our approach could be generalized to other phase-mask type coronagraphs and other ground-based telescopes.

The Large Angle Spectroscopic Coronagraph (LASCO): Visible light coronal imaging and spectroscopy

NASA Technical Reports Server (NTRS)

Brueckner, Guenter E.; Howard, Russell A.; Koomen, Martin J.; Korendyke, C.; Michels, D. J.; Socker, D. G.; Lamy, Philippe; Llebaria, Antoine; Maucherat, J.; Schwenn, Rainer

1992-01-01

The Large Angle Spectroscopic Coronagraph (LASCO) is a triple coronagraph being jointly developed for the Solar and Heliospheric Observatory (SOHO) mission. LASCO comprises three nested coronagraphs (C1, C2, and C3) that image the solar corona for 1.1 to 30 solar radii (C1: 1.1 to 3 solar radii, C2: 1.5 to 6 solar radii, and C3: 3 to 30.0 solar radii). The inner coronagraph (C1) is a newly developed mirror version of the classic Lyot coronagraph without an external occultor, while the middle coronagraph (C2) and the outer coronagraph (C3) are externally occulted instruments. High resolution coronal spectroscopy from 1.1 to 3 R solar radii can be performed by using a Fabry-Perot interferometer, which is part of C1. High volume memories and a high speed microprocessor enable extensive onboard image processing. Image compression by factors of 10 to 20 will result in the transmission of 10 to 20 full images per hour.

Computer assisted performance tests of the Lyman Alpha Coronagraph

NASA Technical Reports Server (NTRS)

Parkinson, W. H.; Kohl, J. L.

1979-01-01

Preflight calibration and performance tests of the Lyman Alpha Coronagraph rocket instrument in the laboratory, with the experiment in its flight configuration and illumination levels near those expected during flight were successfully carried out using a pulse code modulation telemetry system simulator interfaced in real time to a PDP 11/10 computer system. Post acquisition data reduction programs developed and implemented on the same computer system aided in the interpretation of test and calibration data.

Experimental Verification of Bayesian Planet Detection Algorithms with a Shaped Pupil Coronagraph

NASA Astrophysics Data System (ADS)

Savransky, D.; Groff, T. D.; Kasdin, N. J.

2010-10-01

We evaluate the feasibility of applying Bayesian detection techniques to discovering exoplanets using high contrast laboratory data with simulated planetary signals. Background images are generated at the Princeton High Contrast Imaging Lab (HCIL), with a coronagraphic system utilizing a shaped pupil and two deformable mirrors (DMs) in series. Estimates of the electric field at the science camera are used to correct for quasi-static speckle and produce symmetric high contrast dark regions in the image plane. Planetary signals are added in software, or via a physical star-planet simulator which adds a second off-axis point source before the coronagraph with a beam recombiner, calibrated to a fixed contrast level relative to the source. We produce a variety of images, with varying integration times and simulated planetary brightness. We then apply automated detection algorithms such as matched filtering to attempt to extract the planetary signals. This allows us to evaluate the efficiency of these techniques in detecting planets in a high noise regime and eliminating false positives, as well as to test existing algorithms for calculating the required integration times for these techniques to be applicable.

Low-Order Aberrations in Band-limited Lyot Coronagraphs

NASA Astrophysics Data System (ADS)

Sivaramakrishnan, Anand; Soummer, Rémi; Sivaramakrishnan, Allic V.; Lloyd, James P.; Oppenheimer, Ben R.; Makidon, Russell B.

2005-12-01

We study the way Lyot coronagraphs with unapodized entrance pupils respond to small, low-order phase aberrations. This study is applicable to ground-based adaptive optics coronagraphs operating at 90% and higher Strehl ratios, as well as to some space-based coronagraphs with intrinsically higher Strehl ratio imaging. We utilize a second-order expansion of the monochromatic point-spread function (written as a power spectrum of a power series in the phase aberration over clear aperture) to derive analytical expressions for the response of a ``band-limited'' Lyot coronagraph (BLC) to small, low-order, phase aberrations. The BLC possesses a focal plane mask with an occulting spot whose opacity profile is a spatially band-limited function rather than a hard-edged, opaque disk. The BLC is, to first order, insensitive to tilt and astigmatism. Undersizing the stop in the reimaged pupil plane (the Lyot plane) following the focal plane mask can alleviate second-order effects of astigmatism, at the expense of system throughput and angular resolution. The optimal degree of such undersizing depends on individual instrument designs and goals. Our analytical work engenders physical insight and complements existing numerical work on this subject. Our methods can be extended to treat the passage of higher order aberrations through band-limited Lyot coronagraphs by using our polynomial decomposition or an analogous Fourier approach.

Fact Finders Go to Work!

ERIC Educational Resources Information Center

Gordon, Anitra

2005-01-01

Every class needs at least one certified Fact Finder. Most classes have at least one student who is years ahead of the class in reading ability and intellectual curiosity. The teacher and the library media specialist can identify one or more of these students in each class who might be delighted to become a certified Fact Finder. Fact Finders…

First Year of WFIRST/AFTA Coronagraph Technology Development: Testbed Progress Update

NASA Astrophysics Data System (ADS)

Poberezhskiy, Ilya; Poberezhskiy, Ilya; Zhao, Feng; An, Xin; Balasubramanian, Kunjithapatham; Belikov, Rus; Cady, Eric; Diaz, Rosemary; Gordon, Brian; Guyon, Olivier; Kasdin, N. Jeremy; Kern, Brian; Kuhnert, Andreas; Moody, Dwight; Muller, Richard; Nemati, Bijan; Patterson, Keith; Riggs, A. J.; Ryan, Daniel; Seo, Byoung-Joon; Sidick, Erkin; Shi, Fang; Tang, Hong; Trauger, John; Wallace, Kent; Wang, Xu; Wilson, Daniel; White, Victor; Yee, Karl; Zhou, Hanying; Zimmerman, Neil

2015-01-01

NASA's WFIRST/AFTA mission study includes the first high-contrast stellar coronagraph in space. This coronagraph will be capable of imaging and spectrally characterizing giant exoplanets similar to Neptune and Jupiter and possibly super-Earths, as well as circumstellar disks. After a transparent and rigorous downselect process, NASA chose in December of 2013 a primary design called an Occulting Mask Coronagraph (OMC) that combines two technical approaches, Shaped Pupil and Hybrid Lyot, in one instrument. The Phase-Induced Amplitude Apodization Complex Mask Coronagraph was selected as the backup design.The OMC coronagraph technologies were assessed to have the highest likelihood of passing the WFIRST/AFTA flight readiness gates and the ability to produce compelling science by working with the existing 2.4-meter telescope 'as is,' including its central obscuration, expected thermal drift, and the observatory pointing jitter. NASA set us the objective of maturing the WFIRST/AFTA coronagraph to Technology Readiness Level (TRL) 5 by October 1, 2016. A set of technical milestones was agreed upon to track the progress toward achieving TRL 5.Substantial advances in WFIRST/AFTA coronagraph technology have been made during 2014, and the OMC progress is currently running ahead of the schedule laid out by the milestones. Our poster will present some of these key recent results to the community, including:(1) Fabrication and characterization of WFIRST/AFTA coronagraph pupil plane and focal plane masks designed to work with the existing 2.4 telescope.(2) Experimental results demonstrating high contrast achieved on a coronagraph testbed in narrowband and broadband light - first such results obtained with an obscured pupil.(3) Progress in the development of the low-order wavefront sensing and control subsystem that will use rejected starlight to sense and correct both high frequency pointing jitter and slow varying low order aberrations. This subsystem will be integrated with the

Low-order wavefront sensing for coronagraphic telescopes

NASA Astrophysics Data System (ADS)

Subedi, Hari; Kasdin, Jeremy; Peter Varnai

2018-01-01

Space telescopes equipped with a coronagraph to detect and characterize exoplanets must have the ability to sense and control low-order wavefront aberrations. Most concepts for low-order wavefront sensing use the starlight rejected by the coronagraph to sense these aberrations. The sensor must be able to make precise estimates and be robust to photon and read noise. A thorough study of various differential low-order wavefront sensors (LOWFSs) would be beneficial for future space-based observatories designed for exoplanet detection and characterization. In this talk, we will expand on the comparison of different LOWFSs that use the rejected starlight either from the coronagraphic focal plane or the Lyot plane to estimate these aberrations. We will also present the experimental results of the sparse aperture mask (SAM) LOWFS that we have designed at the Princeton High Contrast Imaging Lab (PHCIL).

Requirements and Design Reference Mission for the WFIRST-AFTA Coronagraph Instrument

NASA Technical Reports Server (NTRS)

Demers, Richard T.; Dekens, Frank; Calvet, Rob; Chang, Zensheu; Effinger, Robert; Ek, Eric; Hovland, Larry; Jones, Laura; Loc, Anthony; Nemati, Bijan;

WFIRST-AFTA coronagraph shaped pupil masks: design, fabrication, and characterization

NASA Astrophysics Data System (ADS)

Balasubramanian, Kunjithapatham; White, Victor; Yee, Karl; Echternach, Pierre; Muller, Richard; Dickie, Matthew; Cady, Eric; Prada, Camilo Mejia; Ryan, Daniel; Poberezhskiy, Ilya; Kern, Brian; Zhou, Hanying; Krist, John; Nemati, Bijan; Eldorado Riggs, A. J.; Zimmerman, Neil T.; Kasdin, N. Jeremy

2016-01-01

NASA WFIRST-AFTA mission study includes a coronagraph instrument to find and characterize exoplanets. Various types of masks could be employed to suppress the host starlight to about 10-9 level contrast over a broad spectrum to enable the coronagraph mission objectives. Such masks for high-contrast internal coronagraphic imaging require various fabrication technologies to meet a wide range of specifications, including precise shapes, micron scale island features, ultralow reflectivity regions, uniformity, wave front quality, and achromaticity. We present the approaches employed at JPL to produce pupil plane and image plane coronagraph masks by combining electron beam, deep reactive ion etching, and black silicon technologies with illustrative examples of each, highlighting milestone accomplishments from the High Contrast Imaging Testbed at JPL and from the High Contrast Imaging Lab at Princeton University.

Scaled model guidelines for solar coronagraphs' external occulters with an optimized shape.

PubMed

Landini, Federico; Baccani, Cristian; Schweitzer, Hagen; Asoubar, Daniel; Romoli, Marco; Taccola, Matteo; Focardi, Mauro; Pancrazzi, Maurizio; Fineschi, Silvano

2017-12-01

One of the major challenges faced by externally occulted solar coronagraphs is the suppression of the light diffracted by the occulter edge. It is a contribution to the stray light that overwhelms the coronal signal on the focal plane and must be reduced by modifying the geometrical shape of the occulter. There is a rich literature, mostly experimental, on the appropriate choice of the most suitable shape. The problem arises when huge coronagraphs, such as those in formation flight, shall be tested in a laboratory. A recent contribution [Opt. Lett.41, 757 (2016)OPLEDP0146-959210.1364/OL.41.000757] provides the guidelines for scaling the geometry and replicate in the laboratory the flight diffraction pattern as produced by the whole solar disk and a flight occulter but leaves the conclusion on the occulter scale law somehow unjustified. This paper provides the numerical support for validating that conclusion and presents the first-ever simulation of the diffraction behind an occulter with an optimized shape along the optical axis with the solar disk as a source. This paper, together with Opt. Lett.41, 757 (2016)OPLEDP0146-959210.1364/OL.41.000757, aims at constituting a complete guide for scaling the coronagraphs' geometry.

Technologies Required to Image Earth 2.0 with a Space Coronagraph

NASA Astrophysics Data System (ADS)

Siegler, Nicholas

2017-01-01

NASA's Exoplanet Exploration Program (ExEP) guides the development of technology that enables the direct imaging and characterization of exo-Earths in the habitable zone of their stars for future space observatories. Here we present the coronagraph portion of the 2017 ExEP Technology Gap List, an annual update to ExEP's list of of technologies, to be advanced in the next 1-5 years. A coronagraph is an internal occulter that allows a space telescope to achieve exo-Earth imaging contrast requirements (more than 10 billion) by blocking on-axis starlight while allowing the reflected light of off-axis exoplanets be detected. Building and operating a space coronagraph capable of imaging an exo-Earth will require new technologies beyond those of WFIRST, the first high-contrast conronagraph in space. We review the current state-of-the-art performance of space coronagraphs and the performance level that must be achieved for a coronagraph..

Spacelab Lyman Alpha-White Light Coronagraph Program

NASA Technical Reports Server (NTRS)

Kohl, J. L.

1986-01-01

The Spacelab Lyman Alpha Coronagraph (SLAC) of the Smithsonian Astrophysical Observatory (SAO) and the White Light Coronagraph (WLC) to be provided by the High Altitude Observatory (HAO) are two separate coronagraphs which would be operated in a joint fashion during Spacelab missions to be flown by the Space Shuttle. The two instruments would be used to perform joint observations of solar coronal structures from 1.2 to 8.0 solar radii from sun-center in vacuum ultraviolet and visible radiations. Temperatures, densities, and flow velocities throughout the solar wing acceleration region of the inner solar corona were measured. The Phase I Definition activity resulted in the successful definition and preliminary design of the experiment/instrumentation subsystem and associated software, ground support equipment and interfaces to the extended required to accurately estimate the scope of the investigation and prepare an Investigational Development Plan; the performance of the necessary functional, operations, and safety analyses necessary to complete the Experiment Requirements document.

Testbed Demonstration of Low Order Wavefront Sensing and Control Technology for WFIRST Coronagraph

NASA Astrophysics Data System (ADS)

Shi, Fang; Balasubramanian, K.; Cady, E.; Kern, B.; Lam, R.; Mandic, M.; Patterson, K.; Poberezhskiy, I.; Shields, J.; Seo, J.; Tang, H.; Truong, T.; Wilson, D.

2017-01-01

NASA’s WFIRST-AFTA Coronagraph will be capable of directly imaging and spectrally characterizing giant exoplanets similar to Neptune and Jupiter, and possibly even super-Earths, around nearby stars. To maintain the required coronagraph performance in a realistic space environment, a Low Order Wavefront Sensing and Control (LOWFS/C) subsystem is necessary. The LOWFS/C will use the rejected stellar light to sense and suppress the telescope pointing drift and jitter as well as low order wavefront errors due to the changes in thermal loading of the telescope and the rest of the observatory. The LOWFS/C uses a Zernike phase contrast wavefront sensor with the phase shifting disk combined with the stellar light rejecting occulting mask, a key concept to minimize the non-common path error. Developed as a part of the Dynamic High Contrast Imaging Testbed (DHCIT), the LOWFS/C subsystem also consists of an Optical Telescope Assembly Simulator (OTA-S) to generate the realistic line-of-sight (LoS) drift and jitter as well as low order wavefront error from WFIRST-AFTA telescope’s vibration and thermal drift. The entire LOWFS/C subsystem have been integrated, calibrated, and tested in the Dynamic High Contrast Imaging Testbed. In this presentation we will show the results of LOWFS/C performance during the dynamic coronagraph tests in which we have demonstrated that LOWFS/C is able to maintain the coronagraph contrast with the presence of WFIRST like line-of-sight drift and jitter as well as low order wavefront drifts.

SCORE - Sounding-rocket Coronagraphic Experiment

NASA Astrophysics Data System (ADS)

Fineschi, Silvano; Moses, Dan; Romoli, Marco

The Sounding-rocket Coronagraphic Experiment - SCORE - is a The Sounding-rocket Coronagraphic Experiment - SCORE - is a coronagraph for multi-wavelength imaging of the coronal Lyman-alpha lines, HeII 30.4 nm and HI 121.6 nm, and for the broad.band visible-light emission of the polarized K-corona. SCORE has flown successfully in 2009 acquiring the first images of the HeII line-emission from the extended corona. The simultaneous observation of the coronal Lyman-alpha HI 121.6 nm, has allowed the first determination of the absolute helium abundance in the extended corona. This presentation will describe the lesson learned from the first flight and will illustrate the preparations and the science perspectives for the second re-flight approved by NASA and scheduled for 2016. The SCORE optical design is flexible enough to be able to accommodate different experimental configurations with minor modifications. This presentation will describe one of such configurations that could include a polarimeter for the observation the expected Hanle effect in the coronal Lyman-alpha HI line. The linear polarization by resonance scattering of coronal permitted line-emission in the ultraviolet (UV) can be modified by magnetic fields through the Hanle effect. Thus, space-based UV spectro-polarimetry would provide an additional new tool for the diagnostics of coronal magnetism.

Closing the contrast gap between testbed and model prediction with WFIRST-CGI shaped pupil coronagraph

NASA Astrophysics Data System (ADS)

Zhou, Hanying; Nemati, Bijan; Krist, John; Cady, Eric; Prada, Camilo M.; Kern, Brian; Poberezhskiy, Ilya

2016-07-01

JPL has recently passed an important milestone in its technology development for a proposed NASA WFIRST mission coronagraph: demonstration of better than 1x10-8 contrast over broad bandwidth (10%) on both shaped pupil coronagraph (SPC) and hybrid Lyot coronagraph (HLC) testbeds with the WFIRST obscuration pattern. Challenges remain, however, in the technology readiness for the proposed mission. One is the discrepancies between the achieved contrasts on the testbeds and their corresponding model predictions. A series of testbed diagnoses and modeling activities were planned and carried out on the SPC testbed in order to close the gap. A very useful tool we developed was a derived "measured" testbed wavefront control Jacobian matrix that could be compared with the model-predicted "control" version that was used to generate the high contrast dark hole region in the image plane. The difference between these two is an estimate of the error in the control Jacobian. When the control matrix, which includes both amplitude and phase, was modified to reproduce the error, the simulated performance closely matched the SPC testbed behavior in both contrast floor and contrast convergence speed. This is a step closer toward model validation for high contrast coronagraphs. Further Jacobian analysis and modeling provided clues to the possible sources for the mismatch: DM misregistration and testbed optical wavefront error (WFE) and the deformable mirror (DM) setting for correcting this WFE. These analyses suggested that a high contrast coronagraph has a tight tolerance in the accuracy of its control Jacobian. Modifications to both testbed control model as well as prediction model are being implemented, and future works are discussed.

Stray light rejection in giant externally-occulted solar coronagraphs: experimental developments

NASA Astrophysics Data System (ADS)

Venet, M.; Bazin, C.; Koutchmy, S.; Lamy, P.

2017-11-01

The advent of giant, formation-flight, externally-occulted solar coronagraphs such as ASPIICS (Association de Satellites Pour l'Imagerie et l'Interférométrie de la Couronne Solaire [1,2,3,4]) selected by the European Space Agency (ESA) for its third PROBA (Project for On-Board Autonomy) mission of formation flying demonstration (presently in phase B) and Hi-RISE proposed in the framework of ESA Cosmic Vision program, presents formidable challenges for the study and calibration of instrumental stray light. With distances between the external occulter (EO) and the optical pupil (OP) exceeding hundred meters and occulter sizes larger than a meter, it becomes impossible to perform tests at the real scale. The requirement to limit the over-occultation to less than 1.05 Rsun, orders of magnitude to what has been achieved so far in past coronagraphs, further adds to the challenge. We are approaching the problem experimentally using reduced scale simulators and present below a progress report of our work.

Scaled-model guidelines for formation-flying solar coronagraph missions.

PubMed

Landini, Federico; Romoli, Marco; Baccani, Cristian; Focardi, Mauro; Pancrazzi, Maurizio; Galano, Damien; Kirschner, Volker

2016-02-15

Stray light suppression is the main concern in designing a solar coronagraph. The main contribution to the stray light for an externally occulted space-borne solar coronagraph is the light diffracted by the occulter and scattered by the optics. It is mandatory to carefully evaluate the diffraction generated by an external occulter and the impact that it has on the stray light signal on the focal plane. The scientific need for observations to cover a large portion of the heliosphere with an inner field of view as close as possible to the photospheric limb supports the ambition of launching formation-flying giant solar coronagraphs. Their dimension prevents the possibility of replicating the flight geometry in a clean laboratory environment, and the strong need for a scaled model is thus envisaged. The problem of scaling a coronagraph has already been faced for exoplanets, for a single point source on axis at infinity. We face the problem here by adopting an original approach and by introducing the scaling of the solar disk as an extended source.

Linear-constraint wavefront control for exoplanet coronagraphic imaging systems

NASA Astrophysics Data System (ADS)

Sun, He; Eldorado Riggs, A. J.; Kasdin, N. Jeremy; Vanderbei, Robert J.; Groff, Tyler Dean

2017-01-01

A coronagraph is a leading technology for achieving high-contrast imaging of exoplanets in a space telescope. It uses a system of several masks to modify the diffraction and achieve extremely high contrast in the image plane around target stars. However, coronagraphic imaging systems are very sensitive to optical aberrations, so wavefront correction using deformable mirrors (DMs) is necessary to avoid contrast degradation in the image plane. Electric field conjugation (EFC) and Stroke minimization (SM) are two primary high-contrast wavefront controllers explored in the past decade. EFC minimizes the average contrast in the search areas while regularizing the strength of the control inputs. Stroke minimization calculates the minimum DM commands under the constraint that a target average contrast is achieved. Recently in the High Contrast Imaging Lab at Princeton University (HCIL), a new linear-constraint wavefront controller based on stroke minimization was developed and demonstrated using numerical simulation. Instead of only constraining the average contrast over the entire search area, the new controller constrains the electric field of each single pixel using linear programming, which could led to significant increases in speed of the wavefront correction and also create more uniform dark holes. As a follow-up of this work, another linear-constraint controller modified from EFC is demonstrated theoretically and numerically and the lab verification of the linear-constraint controllers is reported. Based on the simulation and lab results, the pros and cons of linear-constraint controllers are carefully compared with EFC and stroke minimization.

LC-IMS-MS Feature Finder

DOE Office of Scientific and Technical Information (OSTI.GOV)

2013-03-07

LC-IMS-MS Feature Finder is a command line software application which searches for possible molecular ion signatures in multidimensional liquid chromatography, ion mobility spectrometry, and mass spectrometry data by clustering deisotoped peaks with similar monoisotopic mass values, charge states, elution times, and drift times. The software application includes an algorithm for detecting multiple conformations and co-eluting species in the ion mobility dimension. LC-IMS-MS Feature Finder is designed to create an output file with detected features that includes associated information about the detected features.

MiniCOR: A miniature coronagraph for an interplanetary CUBESAT

NASA Astrophysics Data System (ADS)

Vourlidas, A.; Korendyke, C.; Liewer, P. C.; Cutler, J.; Howard, R.; Plunkett, S. P.; Thernisien, A. F.

2015-12-01

Coronagraphs occupy a unique place in Heliophysics, critical to both NAA and NOAA programs. They are the primary means for the study of the extended solar coorna and its short/long term activity. In addition coronagraphs are the only instrument that can image coronal mass ejections (CMEs) leaving the Sun and provide ciritical information for space weather forecasting. We descirbe a low cost miniaturzied CubeSat coronagraph, MiniCOR, designed to operate in deep space which will returndata with higher cadence and sensitivity than that from the SOHO/LASCO coronagraphs. MiniCOR is a six unit (6U) science craft with a tightly integrated, single instrument interplanetary flight system optiized for science. MiniCOR fully exploits recent technology advance in CubeSat technology and active pixel sensors. With a factor of 2.9 improvement in light gathering power over SOHO and quasi-continuous data collection, MiniCOR can observe the slow solar wind, CMEs and shocks with sufficient signal-to-noise ratio (SNR) to open new windows on our understanding of the inner Heliosphere. An operating Minic'OR would prvide coornagraphic observations in support of the upcoming Solar Probe Plus (SPP) and Solar Orbiter (SO) missions.

Shaped pupil Lyot coronagraphs: high-contrast solutions for restricted focal planes

NASA Astrophysics Data System (ADS)

Zimmerman, Neil T.; Eldorado Riggs, A. J.; Jeremy Kasdin, N.; Carlotti, Alexis; Vanderbei, Robert J.

2016-01-01

Coronagraphs of the apodized pupil and shaped pupil varieties use the Fraunhofer diffraction properties of amplitude masks to create regions of high contrast in the vicinity of a target star. Here we present a hybrid coronagraph architecture in which a binary, hard-edged shaped pupil mask replaces the gray, smooth apodizer of the apodized pupil Lyot coronagraph (APLC). For any contrast and bandwidth goal in this configuration, as long as the prescribed region of contrast is restricted to a finite area in the image, a shaped pupil is the apodizer with the highest transmission. We relate the starlight cancellation mechanism to that of the conventional APLC. We introduce a new class of solutions in which the amplitude profile of the Lyot stop, instead of being fixed as a padded replica of the telescope aperture, is jointly optimized with the apodizer. Finally, we describe shaped pupil Lyot coronagraph (SPLC) designs for the baseline architecture of the Wide-Field Infrared Survey Telescope-Astrophysics Focused Telescope Assets (WFIRST-AFTA) coronagraph. These SPLCs help to enable two scientific objectives of the WFIRST-AFTA mission: (1) broadband spectroscopy to characterize exoplanet atmospheres in reflected starlight and (2) debris disk imaging.

Ames Coronagraph Experiment: Enabling Missions to Directly Image Exoplanets

NASA Technical Reports Server (NTRS)

Belikov, Ruslan

2014-01-01

Technology to find biomarkers and life on other worlds is rapidly maturing. If there is a habitable planet around the nearest star, we may be able to detect it this decade with a small satellite mission. In the 2030 decade, we will likely know if there is life in our Galactic neighborhood (1000 nearest stars). The Ames Coronagraph Experiment is developing coronagraphic technologies to enable such missions.

Target & Propagation Models for the FINDER Radar

NASA Technical Reports Server (NTRS)

Cable, Vaughn; Lux, James; Haque, Salmon

2013-01-01

Finding persons still alive in piles of rubble following an earthquake, a severe storm, or other disaster is a difficult problem. JPL is currently developing a victim detection radar called FINDER (Finding Individuals in Emergency and Response). The subject of this paper is directed toward development of propagation & target models needed for simulation & testing of such a system. These models are both physical (real rubble piles) and numerical. Early results from the numerical modeling phase show spatial and temporal spreading characteristics when signals are passed through a randomly mixed rubble pile.

Coronagraphic imaging of circumstellar material around evolved massive stars

NASA Astrophysics Data System (ADS)

Lomax, Jamie R.; Levesque, Emily; Wisniewski, John

2018-01-01

While many astronomical subfields (e.g. the solar, exoplanet, and disk communities) have been using coronagraphy to combat contrast ratio problems for years, the use of coronagraphic imaging techniques to probe the circumstellar environments of massive stars has been surprisingly underutilized. While current extreme adaptive optics coronagraphic imaging systems (e.g. GPI on Gemini South, SPHERE at the VLT, and SCExAO at Subaru) were built for the sole purpose of detecting exoplanets, their ability to provide large contrast ratios and small inner working angles means they can detect gas, dust, and companions that are closer to the central star than ever before. In this poster we present pilot studies of evolved massive stars using several coronagraphic imaging systems and summarize potential science gains this technique might provide.

Apodized Pupil Lyot Coronagraphs designs for future segmented space telescopes

NASA Astrophysics Data System (ADS)

St. Laurent, Kathryn; Fogarty, Kevin; Zimmerman, Neil; N’Diaye, Mamadou; Stark, Chris; Sivaramakrishnan, Anand; Pueyo, Laurent; Vanderbei, Robert; Soummer, Remi

2018-01-01

A coronagraphic starlight suppression system situated on a future flagship space observatory offers a promising avenue to image Earth-like exoplanets and search for biomarkers in their atmospheric spectra. One NASA mission concept that could serve as the platform to realize this scientific breakthrough is the Large UV/Optical/IR Surveyor (LUVOIR). Such a mission would also address a broad range of topics in astrophysics with a multi-wavelength suite of instruments.In support of the community’s assessment of the scientific capability of a LUVOIR mission, the Exoplanet Exploration Program (ExEP) has launched a multi-team technical study: Segmented Coronagraph Design and Analysis (SCDA). The goal of this study is to develop viable coronagraph instrument concepts for a LUVOIR-type mission. Results of the SCDA effort will directly inform the mission concept evaluation being carried out by the LUVOIR Science and Technology Definition Team. The apodized pupil Lyot coronagraph (APLC) is one of several coronagraph design families that the SCDA study is assessing. The APLC is a Lyot-style coronagraph that suppresses starlight through a series of amplitude operations on the on-axis field. Given a suite of seven plausible segmented telescope apertures, we have developed an object-oriented software toolkit to automate the exploration of thousands of APLC design parameter combinations. In the course of exploring this parameter space we have established relationships between APLC throughput and telescope aperture geometry, Lyot stop, inner working angle, bandwidth, and contrast level. In parallel with the parameter space exploration, we have investigated several strategies to improve the robustness of APLC designs to fabrication and alignment errors and integrated a Design Reference Mission framework to evaluate designs with scientific yield metrics.

Low Order Wavefront Sensing and Control for WFIRST-AFTA Coronagraph

NASA Technical Reports Server (NTRS)

Shi, Fang; Balasubramanian, Kunjithapatha; Bartos, Randall; Hien, Randall; Kern, Brian; Krist, John; Lam, Raymond; Moore, Douglas; Moore, James; Patterson, Keith;

PISCES: An Integral Field Spectrograph Technology Demonstration for the WFIRST Coronagraph

NASA Technical Reports Server (NTRS)

McElwain, Michael W.; Mandell, Avi M.; Gong, Qian; Llop-Sayson, Jorge; Brandt, Timothy; Chambers, Victor J.; Grammer, Bryan; Greeley, Bradford; Hilton, George; Perrin, Marshall D.;

PISCES: an integral field spectrograph technology demonstration for the WFIRST coronagraph

NASA Astrophysics Data System (ADS)

McElwain, Michael W.; Mandell, Avi M.; Gong, Qian; Llop-Sayson, Jorge; Brandt, Timothy; Chambers, Victor J.; Grammer, Bryan; Greeley, Bradford; Hilton, George; Perrin, Marshall D.; Stapelfeldt, Karl R.; Demers, Richard; Tang, Hong; Cady, Eric

2016-07-01

We present the design, integration, and test of the Prototype Imaging Spectrograph for Coronagraphic Exoplanet Studies (PISCES) integral field spectrograph (IFS). The PISCES design meets the science requirements for the Wide-Field InfraRed Survey Telescope (WFIRST) Coronagraph Instrument (CGI). PISCES was integrated and tested in the integral field spectroscopy laboratory at NASA Goddard. In June 2016, PISCES was delivered to the Jet Propulsion Laboratory (JPL) where it was integrated with the Shaped Pupil Coronagraph (SPC) High Contrast Imaging Testbed (HCIT). The SPC/PISCES configuration will demonstrate high contrast integral field spectroscopy as part of the WFIRST CGI technology development program.

Hybrid Lyot coronagraph for WFIRST: high-contrast broadband testbed demonstration

NASA Astrophysics Data System (ADS)

Seo, Byoung-Joon; Cady, Eric; Gordon, Brian; Kern, Brian; Lam, Raymond; Marx, David; Moody, Dwight; Muller, Richard; Patterson, Keith; Poberezhskiy, Ilya; Mejia Prada, Camilo; Sidick, Erkin; Shi, Fang; Trauger, John; Wilson, Daniel

2017-09-01

Hybrid Lyot Coronagraph (HLC) is one of the two operating modes of the Wide-Field InfraRed Survey Telescope (WFIRST) coronagraph instrument. Since being selected by National Aeronautics and Space Administration (NASA) in December 2013, the coronagraph technology is being matured to Technology Readiness Level (TRL) 6 by 2018. To demonstrate starlight suppression in presence of expecting on-orbit input wavefront disturbances, we have built a dynamic testbed in Jet Propulsion Laboratory (JPL) in 2016. This testbed, named as Occulting Mask Coronagraph (OMC) testbed, is designed analogous to the WFIRST flight instrument architecture: It has both HLC and Shape Pupil Coronagraph (SPC) architectures, and also has the Low Order Wavefront Sensing and Control (LOWFS/C) subsystem to sense and correct the dynamic wavefront disturbances. We present upto-date progress of HLC mode demonstration in the OMC testbed. SPC results will be reported separately. We inject the flight-like Line of Sight (LoS) and Wavefront Error (WFE) perturbation to the OMC testbed and demonstrate wavefront control using two deformable mirrors while the LOWFS/C is correcting those perturbation in our vacuum testbed. As a result, we obtain repeatable convergence below 5 × 10-9 mean contrast with 10% broadband light centered at 550 nm in the 360 degrees dark hole with working angle between 3 λ/D and 9 λ/D. We present the key hardware and software used in the testbed, the performance results and their comparison to model expectations.

Modeling and Implementation of Multi-Position Non-Continuous Rotation Gyroscope North Finder.

PubMed

Luo, Jun; Wang, Zhiqian; Shen, Chengwu; Kuijper, Arjan; Wen, Zhuoman; Liu, Shaojin

2016-09-20

Even when the Global Positioning System (GPS) signal is blocked, a rate gyroscope (gyro) north finder is capable of providing the required azimuth reference information to a certain extent. In order to measure the azimuth between the observer and the north direction very accurately, we propose a multi-position non-continuous rotation gyro north finding scheme. Our new generalized mathematical model analyzes the elements that affect the azimuth measurement precision and can thus provide high precision azimuth reference information. Based on the gyro's principle of detecting a projection of the earth rotation rate on its sensitive axis and the proposed north finding scheme, we are able to deduct an accurate mathematical model of the gyro outputs against azimuth with the gyro and shaft misalignments. Combining the gyro outputs model and the theory of propagation of uncertainty, some approaches to optimize north finding are provided, including reducing the gyro bias error, constraining the gyro random error, increasing the number of rotation points, improving rotation angle measurement precision, decreasing the gyro and the shaft misalignment angles. According them, a north finder setup is built and the azimuth uncertainty of 18" is obtained. This paper provides systematic theory for analyzing the details of the gyro north finder scheme from simulation to implementation. The proposed theory can guide both applied researchers in academia and advanced practitioners in industry for designing high precision robust north finder based on different types of rate gyroscopes.

Prototype Imaging Spectrograph for Coronagraphic Exoplanet Studies (PISCES) for WFIRST/AFTA

NASA Technical Reports Server (NTRS)

Gong, Qian; McElwain, Michael; Greeley, Bradford; Grammer, Bryan; Marx, Catherine; Memarsadeghi, Nargess; Hilton, George; Perrin, Marshall; Sayson, Llop; Domingo, Jorge;

ACCESS - A Science and Engineering Assessment of Space Coronagraph Concepts for the Direct Imaging and Spectroscopy of Exoplanetary Systems

NASA Technical Reports Server (NTRS)

Trauger, John

2008-01-01

Topics include and overview, science objectives, study objectives, coronagraph types, metrics, ACCESS observatory, laboratory validations, and summary. Individual slides examine ACCESS engineering approach, ACCESS gamut of coronagraph types, coronagraph metrics, ACCESS Discovery Space, coronagraph optical layout, wavefront control on the "level playing field", deformable mirror development for HCIT, laboratory testbed demonstrations, high contract imaging with the HCIT, laboratory coronagraph contrast and stability, model validation and performance predictions, HCIT coronagraph optical layout, Lyot coronagraph on the HCIT, pupil mapping (PIAA), shaped pupils, and vortex phase mask experiments on the HCIT.

Fabrication of coronagraph masks and laboratory scale star-shade masks: characteristics, defects, and performance

NASA Astrophysics Data System (ADS)

Balasubramanian, Kunjithapatham; Riggs, A. J. Eldorado; Cady, Eric; White, Victor; Yee, Karl; Wilson, Daniel; Echternach, Pierre; Muller, Richard; Mejia Prada, Camilo; Seo, Byoung-Joon; Shi, Fang; Ryan, Daniel; Fregoso, Santos; Metzman, Jacob; Wilson, Robert Casey

2017-09-01

NASA WFIRST mission has planned to include a coronagraph instrument to find and characterize exoplanets. Masks are needed to suppress the host star light to better than 10-8 - 10-9 level contrast over a broad bandwidth to enable the coronagraph mission objectives. Such masks for high contrast coronagraphic imaging require various fabrication technologies to meet a wide range of specifications, including precise shapes, micron scale island features, ultra-low reflectivity regions, uniformity, wave front quality, etc. We present the technologies employed at JPL to produce these pupil plane and image plane coronagraph masks, and lab-scale external occulter masks, highlighting accomplishments from the high contrast imaging testbed (HCIT) at JPL and from the high contrast imaging lab (HCIL) at Princeton University. Inherent systematic and random errors in fabrication and their impact on coronagraph performance are discussed with model predictions and measurements.

Crazy Engineering Starshade and Coronagraph

NASA Image and Video Library

2016-04-26

Episode 7 of Crazy Engineering series. Host Mike Meacham, Mechanical Engineer at JPL, learns about the two technologies NASA is investing in to image exoplanets: the Starshade and the Coronagraph. Mike interviews Nick Siegler, Program Chief Technologist, NASA Exoplanet Program in the Starshade lab and the High Contrast Imaging Testbed lab.

Tip/tilt optimizations for polynomial apodized vortex coronagraphs on obscured telescope pupils

NASA Astrophysics Data System (ADS)

Fogarty, Kevin; Pueyo, Laurent; Mazoyer, Johan; N'Diaye, Mamadou

2017-09-01

Obstructions due to large secondary mirrors, primary mirror segmentation, and secondary mirror support struts all introduce diffraction artifacts that limit the performance offered by coronagraphs. However, just as vortex coronagraphs provides theoretically ideal cancellation of on-axis starlight for clear apertures, the Polynomial Apodized Vortex Coronagraph (PAVC) completely blocks on-axis light for apertures with central obscurations, and delivers off-axis throughput that improves as the topological charge of the vortex increases. We examine the sensitivity of PAVC designs to tip/tilt aberrations and stellar angular size, and discuss methods for mitigating these effects. By imposing additional constraints on the pupil plane apodization, we decrease the sensitivity of the PAVC to the small positional shifts of the on-axis source induced by either tip/tilt or stellar angular size; providing a route to overcoming an important hurdle facing the performance of vortex coronagraphs on telescopes with complicated pupils.

Prototype Imaging Spectrograph for Coronagraphic Exoplanet Studies (PISCES) for WFIRST/AFTA

NASA Technical Reports Server (NTRS)

Gong, Qian; Mcelwain, Michael; Greeley, Bradford; Grammer, Bryan; Marx, Catherine; Memarsadeghi, Nargess; Stapelfeldt, Karl; Hilton, George; Sayson, Jorge Llop; Perrin, Marshall;

Prototype Imaging Spectrograph for Coronagraphic Exoplanet Studies (PISCES) for WFIRST-AFTA

NASA Technical Reports Server (NTRS)

Gong, Qian; Mcelwain, Michael; Greeley, Bradford; Grammer, Bryan; Marx, Catherine; Memarsadeghi, Nargess; Stapelfeldt, Karl; Hilton, George; Sayson, Jorge Llop; Perrin, Marshall;

A neural network gravitational arc finder based on the Mediatrix filamentation method

NASA Astrophysics Data System (ADS)

Bom, C. R.; Makler, M.; Albuquerque, M. P.; Brandt, C. H.

2017-01-01

Context. Automated arc detection methods are needed to scan the ongoing and next-generation wide-field imaging surveys, which are expected to contain thousands of strong lensing systems. Arc finders are also required for a quantitative comparison between predictions and observations of arc abundance. Several algorithms have been proposed to this end, but machine learning methods have remained as a relatively unexplored step in the arc finding process. Aims: In this work we introduce a new arc finder based on pattern recognition, which uses a set of morphological measurements that are derived from the Mediatrix filamentation method as entries to an artificial neural network (ANN). We show a full example of the application of the arc finder, first training and validating the ANN on simulated arcs and then applying the code on four Hubble Space Telescope (HST) images of strong lensing systems. Methods: The simulated arcs use simple prescriptions for the lens and the source, while mimicking HST observational conditions. We also consider a sample of objects from HST images with no arcs in the training of the ANN classification. We use the training and validation process to determine a suitable set of ANN configurations, including the combination of inputs from the Mediatrix method, so as to maximize the completeness while keeping the false positives low. Results: In the simulations the method was able to achieve a completeness of about 90% with respect to the arcs that are input into the ANN after a preselection. However, this completeness drops to 70% on the HST images. The false detections are on the order of 3% of the objects detected in these images. Conclusions: The combination of Mediatrix measurements with an ANN is a promising tool for the pattern-recognition phase of arc finding. More realistic simulations and a larger set of real systems are needed for a better training and assessment of the efficiency of the method.

Coronagraphic Notch Filter for Raman Spectroscopy

NASA Technical Reports Server (NTRS)

Cohen, David; Stirbl, Robert

2004-01-01

A modified coronagraph has been proposed as a prototype of improved notch filters in Raman spectrometers. Coronagraphic notch filters could offer alternatives to both (1) the large and expensive double or triple monochromators in older Raman spectrometers and (2) holographic notch filters, which are less expensive but are subject to environmental degradation as well as to limitations of geometry and spectral range. Measurement of a Raman spectrum is an exercise in measuring and resolving faint spectral lines close to a bright peak: In Raman spectroscopy, a monochromatic beam of light (the pump beam) excites a sample of material that one seeks to analyze. The pump beam generates a small flux of scattered light at wavelengths slightly greater than that of the pump beam. The shift in wavelength of the scattered light from the pump wavelength is known in the art as the Stokes shift. Typically, the flux of scattered light is of the order of 10 7 that of the pump beam and the Stokes shift lies in the wave-number range of 100 to 3,000 cm 1. A notch filter can be used to suppress the pump-beam spectral peak while passing the nearby faint Raman spectral lines. The basic principles of design and operation of a coronagraph offer an opportunity for engineering the spectral transmittance of the optics in a Raman spectrometer. A classical coronagraph may be understood as two imaging systems placed end to end, such that the first system forms an intermediate real image of a nominally infinitely distant object and the second system forms a final real image of the intermediate real image. If the light incident on the first telescope is collimated, then the intermediate image is a point-spread function (PSF). If an appropriately tailored occulting spot (e.g., a Gaussian-apodized spot with maximum absorption on axis) is placed on the intermediate image plane, then the instrument inhibits transmission of light from an on-axis source. However, the PSFs of off-axis light sources are

Optimization of coronagraph design for segmented aperture telescopes

NASA Astrophysics Data System (ADS)

Jewell, Jeffrey; Ruane, Garreth; Shaklan, Stuart; Mawet, Dimitri; Redding, Dave

2017-09-01

The goal of directly imaging Earth-like planets in the habitable zone of other stars has motivated the design of coronagraphs for use with large segmented aperture space telescopes. In order to achieve an optimal trade-off between planet light throughput and diffracted starlight suppression, we consider coronagraphs comprised of a stage of phase control implemented with deformable mirrors (or other optical elements), pupil plane apodization masks (gray scale or complex valued), and focal plane masks (either amplitude only or complex-valued, including phase only such as the vector vortex coronagraph). The optimization of these optical elements, with the goal of achieving 10 or more orders of magnitude in the suppression of on-axis (starlight) diffracted light, represents a challenging non-convex optimization problem with a nonlinear dependence on control degrees of freedom. We develop a new algorithmic approach to the design optimization problem, which we call the "Auxiliary Field Optimization" (AFO) algorithm. The central idea of the algorithm is to embed the original optimization problem, for either phase or amplitude (apodization) in various planes of the coronagraph, into a problem containing additional degrees of freedom, specifically fictitious "auxiliary" electric fields which serve as targets to inform the variation of our phase or amplitude parameters leading to good feasible designs. We present the algorithm, discuss details of its numerical implementation, and prove convergence to local minima of the objective function (here taken to be the intensity of the on-axis source in a "dark hole" region in the science focal plane). Finally, we present results showing application of the algorithm to both unobscured off-axis and obscured on-axis segmented telescope aperture designs. The application of the AFO algorithm to the coronagraph design problem has produced solutions which are capable of directly imaging planets in the habitable zone, provided end

STEME: A Robust, Accurate Motif Finder for Large Data Sets

PubMed Central

Reid, John E.; Wernisch, Lorenz

2014-01-01

Motif finding is a difficult problem that has been studied for over 20 years. Some older popular motif finders are not suitable for analysis of the large data sets generated by next-generation sequencing. We recently published an efficient approximation (STEME) to the EM algorithm that is at the core of many motif finders such as MEME. This approximation allows the EM algorithm to be applied to large data sets. In this work we describe several efficient extensions to STEME that are based on the MEME algorithm. Together with the original STEME EM approximation, these extensions make STEME a fully-fledged motif finder with similar properties to MEME. We discuss the difficulty of objectively comparing motif finders. We show that STEME performs comparably to existing prominent discriminative motif finders, DREME and Trawler, on 13 sets of transcription factor binding data in mouse ES cells. We demonstrate the ability of STEME to find long degenerate motifs which these discriminative motif finders do not find. As part of our method, we extend an earlier method due to Nagarajan et al. for the efficient calculation of motif E-values. STEME's source code is available under an open source license and STEME is available via a web interface. PMID:24625410

Contamination from Skylab as determined from the solar coronagraph data

NASA Technical Reports Server (NTRS)

Mcguire, J. P.

1976-01-01

The white light solar coronagraph was one of the scientific telescopes flown on Skylab to study the sun. It studied the sun's atmosphere located from 0.5 to 5.0 solar radii above the sun's limb. Such a telescope is so sensitive to contamination around the spacecraft that it caused a major contamination abatement program to be initiated at the conception of Skylab. The coronagraph's data is analyzed showing the successfulness of that abatement program.

47 CFR 80.289 - Requirements for radio direction finder.

Code of Federal Regulations, 2010 CFR

2010-10-01

... 47 Telecommunication 5 2010-10-01 2010-10-01 false Requirements for radio direction finder. 80.289 Section 80.289 Telecommunication FEDERAL COMMUNICATIONS COMMISSION (CONTINUED) SAFETY AND SPECIAL RADIO... Requirements for radio direction finder. (a) The radio direction finding apparatus must: (1) Be capable of...

The DLR AsteroidFinder for NEOs

NASA Astrophysics Data System (ADS)

Mottola, Stefano; Kuehrt, Ekkehard; Michaelis, Harald; Hoffmann, Harald; Spietz, Peter; Jansen, Frank; Thimo Grundmann, Jan; Hahn, Gerhard; Montenegro, Sergio; Findlay, Ross; Boerner, Anko; Messina, Gabriele; Behnke, Thomas; Tschentscher, Matthias; Scheibe, Karsten; Mertens, Volker; Heidecke, Ansgar

Potential Earth-impacting asteroids that spend most of their time interior to Earth's orbit are extremely difficult to be observed from the ground and remain largely undetected. Firstly, they are mostly located at small solar elongations, where the sky brightness and their faintness due to the large phase angle prevents their discovery. Secondly, these objects tend to have very long synodic orbital periods, which makes observation opportunities rare and impact warning times short. Because of these limitations, even the advent of next generation ground-based asteroid surveys is not likely to radically improve the situation (Veres et al. Icarus 203, p472, 2009). On the other hand, a small satellite with a suitable design can observe close to the Sun and detect these objects efficiently against a dark sky background. For this reason, DLR, the German Aerospace Center, has selected AsteroidFinder as the first experiment to be launched under its new compact satellite national program. The primary goal of the mission is to detect and characterize Near Earth Objects (NEOs), with a particular focus on the population of objects completely contained within Earth's orbit (IEOs or Inner Earth Objects). Current dynamical models predict the existence of more than 1000 such objects down to a size of 100m, of which, due to the abovementioned observation difficulties, only 10 have been discovered to date. Benefitting from the vantage point of a Low Earth Orbit (LEO), AsteroidFinder makes use of a small optical telescope to scan those regions of the sky that are close to the Sun, and therefore beyond the reach of ground based observatories. By estimating the population, the size and the orbital distribution of IEOs, AsteroidFinder will contribute to our knowledge of the inner Solar System, and to the assessment of the impact hazard for the Earth. A secondary goal of the mission is to demonstrate techniques that enable the space-based detection of space debris in the cm size range

SMM coronagraph observations of particulate contamination

NASA Technical Reports Server (NTRS)

St. Cyr, O. C.; Warner, T.

1991-01-01

Some recent images taken by the white light coronagraph telescope aboard the Solar Maximum Mission (SMM) observatory show bright streaks that are apparently caused by particles associated with the spacecraft. In this report we describe these observations, and we analyze the times of their occurrence. We demonstrate that the sightings occur most often near SMM's orbital dawn, and we speculate that thermal shock is the mechanism that produces the particles. Although these sightings have not seriously affected the coronagraph's scientific operations, the unexpected passage of bright material through the field of view of sensitive spaceborne telescopes can lead to data loss or, in some cases, serious detector damage. The topic of space debris has become a significant concern for designers of both manned and unmanned orbiting platforms. The returned samples from the SMM spacecraft and the observations reported here provide a baseline of experience for future orbital platforms that plan long duration missions.

cFinder: definition and quantification of multiple haplotypes in a mixed sample.

PubMed

Niklas, Norbert; Hafenscher, Julia; Barna, Agnes; Wiesinger, Karin; Pröll, Johannes; Dreiseitl, Stephan; Preuner-Stix, Sandra; Valent, Peter; Lion, Thomas; Gabriel, Christian

2015-09-07

Next-generation sequencing allows for determining the genetic composition of a mixed sample. For instance, when performing resistance testing for BCR-ABL1 it is necessary to identify clones and define compound mutations; together with an exact quantification this may complement diagnosis and therapy decisions with additional information. Moreover, that applies not only to oncological issues but also determination of viral, bacterial or fungal infection. The efforts to retrieve multiple haplotypes (more than two) and proportion information from data with conventional software are difficult, cumbersome and demand multiple manual steps. Therefore, we developed a tool called cFinder that is capable of automatic detection of haplotypes and their accurate quantification within one sample. BCR-ABL1 samples containing multiple clones were used for testing and our cFinder could identify all previously found clones together with their abundance and even refine some results. Additionally, reads were simulated using GemSIM with multiple haplotypes, the detection was very close to linear (R(2) = 0.96). Our aim is not to deduce haploblocks over statistics, but to characterize one sample's composition precisely. As a result the cFinder reports the connections of variants (haplotypes) with their readcount and relative occurrence (percentage). Download is available at http://sourceforge.net/projects/cfinder/. Our cFinder is implemented in an efficient algorithm that can be run on a low-performance desktop computer. Furthermore, it considers paired-end information (if available) and is generally open for any current next-generation sequencing technology and alignment strategy. To our knowledge, this is the first software that enables researchers without extensive bioinformatic support to designate multiple haplotypes and how they constitute to a sample.

Proposed Missions - Terrestrial Planet Finder

NASA Image and Video Library

2003-06-20

NASA Terrestrial Planet Finder will use multiple telescopes working together to take family portraits of stars and their orbiting planets and determine which planets may have the right chemistry to sustain life.

Demonstration of Broadband Contrast at 1.2 Lambda/D for the EXCEDE Phase-Induced Amplitude Apodization Coronagraph

NASA Technical Reports Server (NTRS)

Sirbu, Dan; Thomas, Sandrine J.; Belikov, Ruslan; Lozi, Julien; Bendek, Eduardo; Pluzhnik, Eugene; Lynch, Dana H.; Hix, Troy; Zell, Peter; Schneider, Glenn;

Demonstration of high contrast with an obscured aperture with the WFIRST-AFTA shaped pupil coronagraph

NASA Astrophysics Data System (ADS)

Cady, Eric; Prada, Camilo Mejia; An, Xin; Balasubramanian, Kunjithapatham; Diaz, Rosemary; Kasdin, N. Jeremy; Kern, Brian; Kuhnert, Andreas; Nemati, Bijan; Poberezhskiy, Ilya; Eldorado Riggs, A. J.; Zimmer, Robert; Zimmerman, Neil

2016-01-01

The coronagraph instrument on the Wide-Field Infrared Survey Telescope-Astrophysics-Focused Telescope Asset (WFIRST-AFTA) mission study has two coronagraphic architectures, shaped pupil and hybrid Lyot, which may be interchanged for use in different observing scenarios. Each architecture relies on newly developed mask components to function in the presence of the AFTA aperture, and so both must be matured to a high technology readiness level in advance of the mission. A series of milestones were set to track the development of the technologies required for the instrument; we report on completion of WFIRST-AFTA coronagraph milestone 2-a narrowband 10-8 contrast test with static aberrations for the shaped pupil-and the plans for the upcoming broadband coronagraph milestone 5.

CONSTRUCTION OF A SMALL AUTOMATED CORONAGRAPH FOR OBSERVATIONS OF THE LUNAR Na EXOSPHERE

NASA Astrophysics Data System (ADS)

Tucker, Roy; Morgan, T. H.; Killen, R. M.

2013-10-01

We report on the final optical and mechanical design and the construction and initial testing of a small coronagraph at the Winer Observatory, near Sonoita, Arizona. The coronagraph includes a narrow band filter and low-light level camera to observe lunar exospheric sodium in the resonance lines of that element near 590 nm. Without the use of a coronagraph, the signal from sodium would be lost against light scattered by the Earth’s atmosphere and scattered light in the telescope. The design uses Commercial Off the Shelf Technology (COTS), and our goal is to obtain observations while the Lunar Atmosphere and Dust Environment Explorer (LADEE) mission is still in orbit.

FACTOR FINDER CD-ROM | Science Inventory | US EPA

EPA Pesticide Factsheets

The Factor Finder CD-ROM is a user-friendly, searchable tool used to locate exposure factors and sociodemographic data for user-defined populations. Factor Finder improves the exposure assessors and risk assessors (etc.) ability to efficiently locate exposure-related information for a population of concern. Users can either enter keywords into a user-defined search box or use pull-down menus to help pinpoint specific information. The pull-down menu features general categories such as chemicals of concern, contaminated media, geographic region, exposure pathways and routes, age, food categories, and activities to name just a few. Numerous subcategories are available for selection from the pull down menu as well. Factor Finder searches both documents to retrieve the specified data and displays the information on the user's personal computer (PC) screen. Factor Finder is used by exposure assessors, risk assessors, and other concerned communities to locate exposure-related data contained within the Exposure Factors Handbook (EFH) and Sociodemographic Data Used in Identifying Potentially Highly Exposed Populations (HEP). The EFH and the HEP are companion guidance documents produced by the National Center for Environmental Assessment (NCEA) within EPA's Office of Research and Development. The Exposure Factors Handbook (EFH) summarizes data on exposure factors (values that describe human behaviors and characteristics that affect exposure to environmental cont

2. VIEW SOUTHWEST, prime search radar tower, height finder radar ...

Library of Congress Historic Buildings Survey, Historic Engineering Record, Historic Landscapes Survey

2. VIEW SOUTHWEST, prime search radar tower, height finder radar towards, height finder radar towers, and radar tower (unknown function) - Fort Custer Military Reservation, P-67 Radar Station, .25 mile north of Dickman Road, east of Clark Road, Battle Creek, Calhoun County, MI

Fault finder

DOEpatents

Bunch, Richard H.

1986-01-01

A fault finder for locating faults along a high voltage electrical transmission line. Real time monitoring of background noise and improved filtering of input signals is used to identify the occurrence of a fault. A fault is detected at both a master and remote unit spaced along the line. A master clock synchronizes operation of a similar clock at the remote unit. Both units include modulator and demodulator circuits for transmission of clock signals and data. All data is received at the master unit for processing to determine an accurate fault distance calculation.

Exoplanet Coronagraph Shaped Pupil Masks and Laboratory Scale Star Shade Masks: Design, Fabrication and Characterization

NASA Technical Reports Server (NTRS)

Balasubramanian, Kunjithapatha; White, Victor; Yee, Karl; Echternach, Pierre; Muller, Richard; Dickie, Matthew; Cady, Eric; Mejia Prada, Camilo; Ryan, Daniel; Poberezhskiy, Ilya;

Exoplanet coronagraph shaped pupil masks and laboratory scale star shade masks: design, fabrication and characterization

NASA Astrophysics Data System (ADS)

Balasubramanian, Kunjithapatham; White, Victor; Yee, Karl; Echternach, Pierre; Muller, Richard; Dickie, Matthew; Cady, Eric; Mejia Prada, Camilo; Ryan, Daniel; Poberezhskiy, Ilya; Zhou, Hanying; Kern, Brian; Riggs, A. J.; Zimmerman, Neil T.; Sirbu, Dan; Shaklan, Stuart; Kasdin, Jeremy

2015-09-01

Star light suppression technologies to find and characterize faint exoplanets include internal coronagraph instruments as well as external star shade occulters. Currently, the NASA WFIRST-AFTA mission study includes an internal coronagraph instrument to find and characterize exoplanets. Various types of masks could be employed to suppress the host star light to about 10-9 level contrast over a broad spectrum to enable the coronagraph mission objectives. Such masks for high contrast internal coronagraphic imaging require various fabrication technologies to meet a wide range of specifications, including precise shapes, micron scale island features, ultra-low reflectivity regions, uniformity, wave front quality, achromaticity, etc. We present the approaches employed at JPL to produce pupil plane and image plane coronagraph masks by combining electron beam, deep reactive ion etching, and black silicon technologies with illustrative examples of each, highlighting milestone accomplishments from the High Contrast Imaging Testbed (HCIT) at JPL and from the High Contrast Imaging Lab (HCIL) at Princeton University. We also present briefly the technologies applied to fabricate laboratory scale star shade masks.

Low-signal, coronagraphic wavefront estimation with Kalman filtering in the high contrast imaging testbed

NASA Astrophysics Data System (ADS)

Riggs, A. J. Eldorado; Cady, Eric J.; Prada, Camilo M.; Kern, Brian D.; Zhou, Hanying; Kasdin, N. Jeremy; Groff, Tyler D.

2016-07-01

For direct imaging and spectral characterization of cold exoplanets in reflected light, the proposed Wide-Field Infrared Survey Telescope (WFIRST) Coronagraph Instrument (CGI) will carry two types of coronagraphs. The High Contrast Imaging Testbed (HCIT) at the Jet Propulsion Laboratory has been testing both coronagraph types and demonstrated their abilities to achieve high contrast. Focal plane wavefront correction is used to estimate and mitigate aberrations. As the most time-consuming part of correction during a space mission, the acquisition of probed images for electric field estimation needs to be as short as possible. We present results from the HCIT of narrowband, low-signal wavefront estimation tests using a shaped pupil Lyot coronagraph (SPLC) designed for the WFIRST CGI. In the low-flux regime, the Kalman filter and iterated extended Kalman filter provide faster correction, better achievable contrast, and more accurate estimates than batch process estimation.

WFIRST: Science with the coronagraphic instrument

NASA Astrophysics Data System (ADS)

Macintosh, Bruce; Turnbull, Margaret; Lewis, Nikole K.; Roberge, Aki; Kasdin, Jeremy; WFIRST Coronagraph Science Investigation Teams, JPL Coronagraph Instrument Team

2018-01-01

The Wide-Field Infrared Survey Telescope (WFIRST) is baselined to incorporate a coronagraphic instrument (CGI) for high-contast imaging and spectroscopy of extrasolar planets and circumstellar dust. CGI incorporates a pair of deformable mirrors to control the wavefront of light, occulting masks that control diffraction from the obscured WFIRST aperture, and two science modes: an integral field spectrograph and a direct imager. We give an overview of CGI’s architecture and science capabilities. CGI provides the first opportunity to fly a fully integrated active-optics coronagraph in space, paving the way for future missions such as HABEX or LUVOIR. The baseline science case includes spectroscopic characterization of known giant planets from 1-5 AU, photometric characterization of a broader sample, and searches for new lower-mass planets orbiting nearby stars. CGI will also be sensitive to extrsolar zodiacal dust associated with nearby stars, as well as debris disks and protoplanetary dust disks hosted by younger stars. These measurements will inform our understanding of planet formation and advance towards spectral characterization of earthilke planets.

Laboratory demonstration of an optical vortex mask coronagraph using photonic crystal

NASA Astrophysics Data System (ADS)

Murakami, N.; Baba, N.; Ise, A.; Sakamoto, M.; Oka, K.

2010-10-01

Photonic crystal, artificial periodic nanostructure, is an attractive device for constructing focal-plane phase-mask coronagraphs such as segmented phase masks (four-quadrant, eight-octant, and 4N-segmented ones) and an optical vortex mask (OVM), because of its extremely small manufacturing defect. Recently, speckle-noise limited contrast has been demonstrated for two monochromatic lasers by using the eight-octant phase-mask made of the photonic crystal (Murakami et al. 2010, ApJ, 714, 772). We applied the photonic-crystal device to the OVM coronagraph. The OVM is more advantageous over the segmented phase masks because it does not have discontinuities other than a central singular point and provides a full on-sky field of view. For generating an achromatic optical vortex, we manufactured an axially-symmetric half-wave plate (ASHWP). It is expected that a size of the manufacturing defect due to the central singularity is an order of several hundreds nanometers. The ASHWP is placed between two circular polarizers for modulating a Pancharatnam phase. A continuous spiral phase modulation is then implemented achromatically. We carried out preliminary laboratory demonstration of the OVM coronagraph using two monochromatic lasers as a model star (wavelengths of 532 nm and 633 nm). We report a principle of the achromatic optical-vortex generation, and results of the laboratory demonstration of the OVM coronagraph.

Coronagraphic Imaging with HST and STIS

NASA Technical Reports Server (NTRS)

Grady, C. A.; Proffitt, C.; Malumuth, E.; Woodgate, B. E.; Gull, T. R.; Bowers, C. W.; Heap, S. R.; Kimble, R. A.; Lindler, D.; Plait, P.

2002-01-01

Revealing faint circumstellar nebulosity and faint stellar or substellar companions to bright stars typically requires use of techniques for rejecting the direct, scattered, and diffracted light of the star. One such technique is Lyot coronagraphy. We summarize the performance of the white-light coronagraphic capability of the Space Telescope Imaging spectrograph, on board the Hubble Space Telescope.

Coronagraphic Observations of Lunar Sodium

NASA Technical Reports Server (NTRS)

Hunten, D. M.; Sprague, A. L.

1997-01-01

This grant supported an investigation of lunar sodium by our coronagraph and spectrograph on nearby Mount Lemmon. We report successful operation and data analysis during International Lunar Atmosphere Week, September 15 - 22, 1995, and submittal of a paper to Icarus. The core of the proposed work was to observe the lunar sodium atmosphere with our classical Lyot coronagraph and specially-built grating spectrograph on Mount Lemmon, a 9400-foot peak about an hour's drive from Tucson. It is optimized for low scattered light and for observing from the Moon's limb to an altitude of approx.1 lunar radius. The grating has 600 lines/mm and a blaze angle of 49 deg., and is used with a somewhat wide slit at a resolving power of about 5000. It is called DARRK for the initials of the people who designed it. The rejection of stray light from the Moon's disk is spectacularly good: when the sky is clear this light is absent right up to a few arcsec from the limb. We use an excellent 1024 by 1024 pixel CCD camera, operated at -100 C; the exposures are 10 to 30 min. Data reduction is done with IRAF running on a Sun Sparcstation.

The coronagraphic Modal Wavefront Sensor: a hybrid focal-plane sensor for the high-contrast imaging of circumstellar environments

NASA Astrophysics Data System (ADS)

Wilby, M. J.; Keller, C. U.; Snik, F.; Korkiakoski, V.; Pietrow, A. G. M.

2017-01-01

The raw coronagraphic performance of current high-contrast imaging instruments is limited by the presence of a quasi-static speckle (QSS) background, resulting from instrumental Non-Common Path Errors (NCPEs). Rapid development of efficient speckle subtraction techniques in data reduction has enabled final contrasts of up to 10-6 to be obtained, however it remains preferable to eliminate the underlying NCPEs at the source. In this work we introduce the coronagraphic Modal Wavefront Sensor (cMWS), a new wavefront sensor suitable for real-time NCPE correction. This combines the Apodizing Phase Plate (APP) coronagraph with a holographic modal wavefront sensor to provide simultaneous coronagraphic imaging and focal-plane wavefront sensing with the science point-spread function. We first characterise the baseline performance of the cMWS via idealised closed-loop simulations, showing that the sensor is able to successfully recover diffraction-limited coronagraph performance over an effective dynamic range of ±2.5 radians root-mean-square (rms) wavefront error within 2-10 iterations, with performance independent of the specific choice of mode basis. We then present the results of initial on-sky testing at the William Herschel Telescope, which demonstrate that the sensor is capable of NCPE sensing under realistic seeing conditions via the recovery of known static aberrations to an accuracy of 10 nm (0.1 radians) rms error in the presence of a dominant atmospheric speckle foreground. We also find that the sensor is capable of real-time measurement of broadband atmospheric wavefront variance (50% bandwidth, 158 nm rms wavefront error) at a cadence of 50 Hz over an uncorrected telescope sub-aperture. When combined with a suitable closed-loop adaptive optics system, the cMWS holds the potential to deliver an improvement of up to two orders of magnitude over the uncorrected QSS floor. Such a sensor would be eminently suitable for the direct imaging and spectroscopy of

Precursor Science for the Terrestrial Planet Finder

NASA Technical Reports Server (NTRS)

Lawson, P. R. (Editor); Unwin, S. C. (Editor); Beichman, C. A. (Editor)

2004-01-01

This document outlines a path for the development of the field of extrasolar planet research, with a particular emphasis on the goals of the Terrestrial Planet Finder (TPF). Over the past decade, a new field of research has developed, the study of extrasolar planetary systems, driven by the discovery of massive planets around nearby stars. The planet count now stands at over 130. Are there Earth-like planets around nearby stars? Might any of those planets be conducive to the formation and maintenance of life? These arc the questions that TPF seeks to answer. TPF will be implemented as a suite of two space observatories, a 6-m class optical coronagraph, to be launched around 20 14, and a formation flying mid-infrared interferometer, to be launched sometime prior to 2020. These facilities will survey up to 165 or more nearby stars and detect planets like Earth should they be present in the 'habitable zone' around each star. With observations over a broad wavelength range, TPF will provide a robust determination of the atmospheric composition of planets to assess habitability and the presence of life. At this early stage of TPF's development, precursor observational and theoretical programs are essential to help define the mission, to aid our understanding of the planets that TPF could discover, and to characterize the stars that TPF will eventually study. This document is necessarily broad in scope because the significance of individual discoveries is greatly enhanced when viewed in thc context of the field as a whole. This document has the ambitious goal of taking us from our limited knowledge today, in 2004, to the era of TPF observations in the middle of the next decade. We must use the intervening years wisely. This document will be reviewed annually and updated as needed. The most recent edition is available online at http://tpf.jpl.nasa.gov/ or by email request to lawson@hucy.jpl.nasa.gov

Electric field conjugation for ground-based high-contrast imaging: robustness study and tests with the Project 1640 coronagraph

NASA Astrophysics Data System (ADS)

Matthews, Christopher T.; Crepp, Justin R.; Vasisht, Gautam; Cady, Eric

2017-10-01

The electric field conjugation (EFC) algorithm has shown promise for removing scattered starlight from high-contrast imaging measurements, both in numerical simulations and laboratory experiments. To prepare for the deployment of EFC using ground-based telescopes, we investigate the response of EFC to unaccounted for deviations from an ideal optical model. We explore the linear nature of the algorithm by assessing its response to a range of inaccuracies in the optical model generally present in real systems. We find that the algorithm is particularly sensitive to unresponsive deformable mirror (DM) actuators, misalignment of the Lyot stop, and misalignment of the focal plane mask. Vibrations and DM registration appear to be less of a concern compared to values expected at the telescope. We quantify how accurately one must model these core coronagraph components to ensure successful EFC corrections. We conclude that while the condition of the DM can limit contrast, EFC may still be used to improve the sensitivity of high-contrast imaging observations. Our results have informed the development of a full EFC implementation using the Project 1640 coronagraph at Palomar observatory. While focused on a specific instrument, our results are applicable to the many coronagraphs that may be interested in employing EFC.

WFIRST: Managing Telescope Wavefront Stability to Meet Coronagraph Performance

NASA Astrophysics Data System (ADS)

Noecker, Martin; Poberezhskiy, Ilya; Kern, Brian; Krist, John; WFIRST System Engineering Team

2018-01-01

The WFIRST coronagraph instrument (CGI) needs a stable telescope and active wavefront control to perform coronagraph science with an expected sensitivity of 8x10-9 in the exoplanet-star flux ratio (SNR=10) at 200 milliarcseconds angular separation. With its subnanometer requirements on the stability of its input wavefront error (WFE), the CGI employs a combination of pointing and wavefront control loops and thermo-mechanical stability to meet budget allocations for beam-walk and low-order WFE, which enable stable starlight speckles on the science detector that can be removed by image subtraction. We describe the control strategy and the budget framework for estimating and budgeting the elements of wavefront stability, and the modeling strategy to evaluate it.

Design and Fabrication of the All-Reflecting H-Lyman alpha Coronagraph/Polarimeter

NASA Technical Reports Server (NTRS)

Hoover, Richard B.; Johnson, R. Barry; Fineschi, Silvano; Walker, Arthur B. C., Jr.; Baker, Phillip C.; Zukic , Muamer; Kim, Jongmin

1993-01-01

We have designed, analyzed, and are now fabricating an All-Reflecting H-Lyman alpha Coronagraph/Polarimeter for solar research. This new instrument operates in a narrow bandpass centered at lambda 1215.7 A-the neutral hydrogen Lyman alpha (Ly-alpha) line. It is shorter and faster than the telescope which produced solar Ly-alpha images as a part of the MSSTA payload that was launched on May 13, 1991. The Ly-alpha line is produced and linearly polarized in the solar corona by resonance scattering, and the presence of a magnetic field modifies this polarization according to the Hanle effect. The Lyman alpha Coronagraph/Polarimeter instrument has been designed to measure coronal magnetic fields by interpreting, via the Hanle effect, the measured linear polarization of the coronal Ly-alpha line. Ultrasmooth mirrors, polarizers, and filters are being flow-polished for this instrument from CVD silicon carbide substrates. These optical components will be coated using advanced induced transmission and absorption thin film multilayer coatings, to optimize the reflectivity and polarization properties at 1215.7 A. We describe some of the solar imaging results obtained with the MSSTA Lyman alpha coronagraph. We also discuss the optical design parameters and fabrication plans for the All-Reflecting H-Lyman alpha Coronagraph/Polarimeter.

IC-Finder: inferring robustly the hierarchical organization of chromatin folding

PubMed Central

Haddad, Noelle

2017-01-01

Abstract The spatial organization of the genome plays a crucial role in the regulation of gene expression. Recent experimental techniques like Hi-C have emphasized the segmentation of genomes into interaction compartments that constitute conserved functional domains participating in the maintenance of a proper cell identity. Here, we propose a novel method, IC-Finder, to identify interaction compartments (IC) from experimental Hi-C maps. IC-Finder is based on a hierarchical clustering approach that we adapted to account for the polymeric nature of chromatin. Based on a benchmark of realistic in silico Hi-C maps, we show that IC-Finder is one of the best methods in terms of reliability and is the most efficient numerically. IC-Finder proposes two original options: a probabilistic description of the inferred compartments and the possibility to explore the various hierarchies of chromatin organization. Applying the method to experimental data in fly and human, we show how the predicted segmentation may depend on the normalization scheme and how 3D compartmentalization is tightly associated with epigenomic information. IC-Finder provides a robust and generic ‘all-in-one’ tool to uncover the general principles of 3D chromatin folding and their influence on gene regulation. The software is available at http://membres-timc.imag.fr/Daniel.Jost/DJ-TIMC/Software.html. PMID:28130423

Rotatable Aperture Coronagraph for Exoplanetary Studies (RACES)

NASA Astrophysics Data System (ADS)

Chakrabarti, Supriya; Mendillo, Christopher; Mukherjee, Sunip; Martel, Jason; Cook, Timothy; Polidan, Ronald S.; Rafanelli, Gerard L.; Spencer, Susan B.; Wolfe, Douglas w.

2018-01-01

We present the design and expected performance of RACES, a suborbital mission concept to directly image exo-Jupiters with a rotatable non-circular aperture telescope. By using a high-aspect ratio elliptical or rectangular primary mirror (2.3m x 0.6m), this mission achieves the same angular resolution and inner working angle as a 2.3m dia telescope. Such an elliptical or rectangular system would fill the volume of a cylindrical launch vehicle more efficiently and by choosing the aspect ratio one can appropriately tailor its light gathering power. RACES can therefore serve as a pathfinder for future larger missions for exoplanetary explorations. For example, the system described here approaches the collecting area of the well studied EXO-C concept and exceeds its angular resolution. The mission concept, design studies, observation strategy and expected target yield for RACES will be presented, as well as simulations of the high contrast vector vortex coronagraph operating with an un-obscured elliptical aperture.

Optimization of the occulter for the Solar Orbiter/METIS coronagraph

NASA Astrophysics Data System (ADS)

Landini, Federico; Vivès, Sébastien; Romoli, Marco; Guillon, Christophe; Pancrazzi, Maurizio; Escolle, Clement; Focardi, Mauro; Antonucci, Ester; Fineschi, Silvano; Naletto, Giampiero; Nicolini, Gianalfredo; Nicolosi, Piergiorgio; Spadaro, Daniele

2012-09-01

METIS (Multi Element Telescope for Imaging and Spectroscopy investigation), selected to fly aboard the Solar Orbiter ESA/NASA mission, is conceived to perform imaging (in visible, UV and EUV) and spectroscopy (in EUV) of the solar corona, by means of an integrated instrument suite located on a single optical bench and sharing the same aperture on the satellite heat shield. As every coronagraph, METIS is highly demanding in terms of stray light suppression. Coronagraphs history teaches that a particular attention must be dedicated to the occulter optimization. The METIS occulting system is of particular interest due to its innovative concept. In order to meet the strict thermal requirements of Solar Orbiter, METIS optical design has been optimized by moving the entrance pupil at the level of the external occulter on the S/C thermal shield, thus reducing the size of the external aperture. The scheme is based on an inverted external-occulter (IEO). The IEO consists of a circular aperture on the Solar Orbiter thermal shield. A spherical mirror rejects back the disk-light through the IEO. A breadboard of the occulting assembly (BOA) has been manufactured in order to perform stray light tests in front of two solar simulators (in Marseille, France and in Torino, Italy). A first measurement campaign has been carried on at the Laboratoire d'Astrophysique de Marseille. In this paper we describe the BOA design, the laboratory set-up and the preliminary results.

NIRCam Coronagraphic Observations of Disks and Planetary Systems

NASA Astrophysics Data System (ADS)

Beichman, Charles A.; Ygouf, Marie; Gaspar, Andras; NIRCam Science Team

2017-06-01

The NIRCam coronagraph offers a dramatic increase in sensitivity at wavelengths of 3-5 um where young planets are brightest. While large ground-based telescopes with Extreme Adaptive Optics have an advantage in inner working angle, NIRCam's sensitivity will allow high precision photometry for known planets and searches for planets with masses below that of Saturn. For debris disk science NIRCam observations will address the scattering properties of dust, look for evidence of ices and tholins, and search for planets which affect the structure of the disk itself.The NIRCam team's GTO program includes medium-band filter observations of known young planets having 1-5 Jupiter masses. A collaborative program with the MIRI team will provide coronagraphic observations at longer wavelengths. The combined dataset will yield the exoplanet’s total luminosity and effective temperature, an estimate of the initial entropy of the newly-formed planet, and the retrieval of atmospheric properties.The program will also make deep searches for lower mass planets toward known planetary systems, nearby young M stars and debris disk systems. Achievable mass limits range from ~1 Jupiter mass beyond 20 AU for the brightest A stars to perhaps a Uranus mass within 10 AU for the closest M stars.We will discuss details of the coronagraphic program for both the exoplanet and debris disk cases with an emphasis on using APT to optimize the observations of target and reference stars.

Lessons from Coronagraphic Imaging with HST that may apply to JWST

NASA Astrophysics Data System (ADS)

Grady, C. A.; Hines, Dean C.; Schneider, Glenn; McElwain, Michael W.

2017-06-01

One of the major capabilities offered by JWST is coronagraphic imaging from space, covering the near through mid-IR and optimized for study of planet formation and the evolution of planetary systems. Planning for JWST has resulted in expectations for instrument performance, observation strategies and data reduction approaches. HST with 20 years of coronagraphic imaging offers some experience which may be useful to those planning for JWST. 1) Real astronomical sources do not necessarily conform to expectations. Debris disks may be accompanied by more distant material, and some systems may be conspicuous in scattered light when offering only modest IR excesses. Proto-planetary disks are not constantly illuminated, and thus a single epoch observation of the source may not be sufficient to reveal everything about it. 2) The early expectation with NICMOS was that shallow, 2-roll observations would reveal a wealth of debris disks imaged in scattered light, and that only a limited set of PSF observations would be required. Instead, building up a library of spatially resolved disks in scattered light has proven to require alternate observing strategies, is still on-going, and has taken far longer than expected. 3) A wealth of coronagraphic options with an instrument may not be scientifically informative, unless there is a similar time investment in acquisition of calibration data in support of the science observations. 4) Finally, no one anticipated what can be gleaned from coronagraphic imaging. We should expect similar, unexpected, and ultimately revolutionary discoveries with JWST.

WFIRST: Guest observer science with the coronagraph instrument

NASA Astrophysics Data System (ADS)

Levesque, Emily; Lomax, Jamie; Akeson, Rachel; Meshkat, Tiffany; WFIRST CGI GO working group

2018-01-01

In addition to the discovery and characterization of exoplanets, the coronagraph instrument (CGI) on WFIRST has the potential for ground-breaking discoveries in other fields through the Guest Observer (GO) program. 25% of the observing time in the primary mission will be made available to the GO community, and GO science with the CGI spans a broad range of scientific applications. These include imaging of binary and multiple asteroids and Kuiper Belt objects, the circumstellar environments of evolved giants and supergiants, debris disks around young stars, and the circumnuclear regions of active galactic nuclei. In this poster we summarize some of the key compelling science gains that can be pursued with the GO program and present preliminary analyses of the technical gains that the CGI will be able to offer over other contemporary coronagraphs, including those on JWST and ground-based observatories.

METIS: the visible and UV coronagraph for solar orbiter

NASA Astrophysics Data System (ADS)

Romoli, M.; Landini, F.; Antonucci, E.; Andretta, V.; Berlicki, A.; Fineschi, S.; Moses, J. D.; Naletto, G.; Nicolosi, P.; Nicolini, G.; Spadaro, D.; Teriaca, L.; Baccani, C.; Focardi, M.; Pancrazzi, M.; Pucci, S.; Abbo, L.; Bemporad, A.; Capobianco, G.; Massone, G.; Telloni, D.; Magli, E.; Da Deppo, V.; Frassetto, F.; Pelizzo, M. G.; Poletto, L.; Uslenghi, M.; Vives, S.; Malvezzi, M.

2017-11-01

METIS coronagraph is designed to observe the solar corona with an annular field of view from 1.5 to 2.9 degrees in the visible broadband (580-640 nm) and in the UV HI Lyman-alpha, during the Sun close approaching and high latitude tilting orbit of Solar Orbiter. The big challenge for a coronagraph is the stray light rejection. In this paper after a description of the present METIS optical design, the stray light rejection design is presented in detail together with METIS off-pointing strategies throughout the mission. Data shown in this paper derive from the optimization of the optical design performed with Zemax ray tracing and from laboratory breadboards of the occultation system and of the polarimeter.

High-contrast coronagraph performance in the presence of focal plane mask defects

NASA Astrophysics Data System (ADS)

Sidick, Erkin; Shaklan, Stuart; Balasubramanian, Kunjithapatham; Cady, Eric

2014-08-01

We have carried out a study of the performance of high-contrast coronagraphs in the presence of mask defects. We have considered the effects of opaque and dielectric particles of various dimensions, as well as systematic mask fabrication errors and the limitations of material properties in creating dark holes. We employ sequential deformable mirrors to compensate for phase and amplitude errors, and show the limitations of this approach in the presence of coronagraph image-mask defects.

Design of vein finder with multi tuning wavelength using RGB LED

NASA Astrophysics Data System (ADS)

Chandra, Franky; Wahyudianto, Aries; Yasin, M.

2017-05-01

Detection of intra vena is very important technique in the medical clinic applications. For intravenous detection, some nurses usually have a mistake which can cause a pain or injured to the patient. When the nurses are headed with this problem, it becomes dangerous for the patient. To solve the problem, in this paper, vein finder with multi-tuning wavelength for intra vena detection is proposed and investigated. Vein finder is tested to various skin colour and body mass. The results show that vein finder was successfully designed with controllable wavelength in the range of 600-696 nm using RGB LED.

Threshold raw retrieved contrast in coronagraphs is limited by internal polarization

NASA Astrophysics Data System (ADS)

Breckinridge, James

The objective of this work is to provide the exoplanet program with an accurate model of the coronagraph complex point spread function, methods to correct chromatic aberration in the presence of polarization aberrations, device requirements to minimize and compensate for these aberrations at levels needed for exoplanet coronagraphy, and exoplanet retrieval algorithms in the presence of polarizaiton aberrations. Currently, space based coronagraphs are designed and performance analyzed using scalar wave aberration theory. Breckinridge, Lam & Chipman (2015) PASP 127: 445-468 and Breckinridge & Oppenheimer (2004) ApJ 600: 1091-1098 showed that astronomical telescopes designed for exoplanet and precision astrometric science require polarization or vector-wave analysis. Internal instrument polarization limits both threshold raw contrast and measurements of the vector wave properties of the electromagnetic radiation from stars, exoplanets, gas and dust. The threshold raw contrast obtained using only scalar wave theory is much more optimistic than that obtained using the more hardware-realistic vector wave theory. Internal polarization reduces system contrast, increases scattered light, alters radiometric measurements, distorts diffraction-limited star images and reduces signal-to-noise ratio. For example, a vector-wave analysis shows that the WFIRST-CGI instrument will have a threshold raw contrast of 10-7 not the 10-8 forecasted using the scalar wave analysis given in the WFIRST-CGI 2015 report. The physical nature of the complex point spread function determines the exoplanet scientific yield of coronagraphs. We propose to use the Polaris-M polarization aberration ray-tracing software developed at the College of Optical Science of the University of Arizona to ray trace both a "typical" exoplanet coronagraph system as well as the WFIRST-CGI system. Threshold raw contrast and the field across the complex PSF will be calculated as a function of optical device vector E

Post-processing of the HST STIS coronagraphic observations

NASA Astrophysics Data System (ADS)

Ren, Bin; Pueyo, Laurent; Perrin, Marshall D.; Debes, John H.; Choquet, Élodie

2017-09-01

In the past 20 years, the Hubble Space Telescope (HST) STIS coronagraphic instrument has observed more than 100 stars, obtaining more than 4,000 readouts since its installment on HST in 1997 and the numbers are still increasing. We reduce the whole STIS coronagraphic archive at the most commonly observed positions (Wedge A0.6 and A1.0) with new post-processing methods, and present our results here. We are able to recover all of the 32 previously reported circumstellar disks, and obtain better contrast close to the star. For some of the disks, our results are limited by the over subtraction of the methods, and therefore the major regions of the disks can be recovered except the faintest regions. We also explain our efforts in the calibration of its new BAR5 occulting position, enabling STIS to explore inner regions as close as 0.2 00 .

75 FR 6207 - Proposed Collection; Comment Request; Lost People Finder System

Federal Register 2010, 2011, 2012, 2013, 2014

2010-02-08

... information to care providers who are treating the injured (e.g., providing medical history or information... used for reunification during a disaster for information (e.g., the Google Person Finder system that... be much higher. Based on use of the Google Person Finder system during the Haiti earthquake (which...

Recent achievements on ASPIICS, an externally occulted coronagraph for PROBA-3

NASA Astrophysics Data System (ADS)

Renotte, Etienne; Buckley, Steve; Cernica, Ileana; Denis, François; Desselle, Richard; De Vos, Lieve; Fineschi, Silvano; Fleury-Frenette, Karl; Galano, Damien; Galy, Camille; Gillis, Jean-Marie; Graas, Estelle; Graczyk, Rafal; Horodyska, Petra; Kranitis, Nektarios; Kurowski, Michal; Ladno, Michal; Liebecq, Sylvie; Loreggia, Davide; Mechmech, Idriss; Melich, Radek; Mollet, Dominique; Mosdorf, Michał; Mroczkowski, Mateusz; O'Neill, Kevin; Patočka, Karel; Paschalis, Antonis; Peresty, Radek; Radzik, Bartlomiej; Rataj, Miroslaw; Salvador, Lucas; Servaye, Jean-Sébastien; Stockman, Yvan; Thizy, Cédric; Walczak, Tomasz; Zarzycka, Alicja; Zhukov, Andrei

2016-07-01

This paper presents the current status of ASPIICS, a solar coronagraph that is the primary payload of ESA's formation flying in-orbit demonstration mission PROBA-3. The "sonic region" of the Sun corona remains extremely difficult to observe with spatial resolution and sensitivity sufficient to understand the fine scale phenomena that govern the quiescent solar corona, as well as phenomena that lead to coronal mass ejections (CMEs), which influence space weather. Improvement on this front requires eclipse-like conditions over long observation times. The space-borne coronagraphs flown so far provided a continuous coverage of the external parts of the corona but their over-occulting system did not permit to analyse the part of the white-light corona where the main coronal mass is concentrated. The PROBA-3 Coronagraph System, also known as ASPIICS (Association of Spacecraft for Polarimetric and Imaging Investigation of the Corona of the Sun) is designed as a classical externally occulted Lyot coronagraph but it takes advantage of the opportunity to place the external occulter on a companion spacecraft, about 150m apart, to perform high resolution imaging of the inner corona of the Sun as close as ~1.1 solar radii. The images will be tiled and compressed on board in an FPGA before being down-linked to ground for scientific analyses. ASPIICS is built by a large European consortium including about 20 partners from 7 countries under the auspices of the European Space Agency. This paper is reviewing the recent development status of the ASPIICS instrument as it is approaching CDR.

The COronal Solar Magnetism Observatory (COSMO) Large Aperture Coronagraph

NASA Astrophysics Data System (ADS)

Tomczyk, Steve; Gallagher, Dennis; Wu, Zhen; Zhang, Haiying; Nelson, Pete; Burkepile, Joan; Kolinksi, Don; Sutherland, Lee

2013-04-01

The COSMO is a facility dedicated to observing coronal and chromospheric magnetic fields. It will be located on a mountaintop in the Hawaiian Islands and will replace the current Mauna Loa Solar Observatory (MLSO). COSMO will provide unique observations of the global coronal magnetic fields and its environment to enhance the value of data collected by other observatories on the ground (e.g. SOLIS, BBO NST, Gregor, ATST, EST, Chinese Giant Solar Telescope, NLST, FASR) and in space (e.g. SDO, Hinode, SOHO, GOES, STEREO, Solar-C, Solar Probe+, Solar Orbiter). COSMO will employ a fleet of instruments to cover many aspects of measuring magnetic fields in the solar atmosphere. The dynamics and energy flow in the corona are dominated by magnetic fields. To understand the formation of CMEs, their relation to other forms of solar activity, and their progression out into the solar wind requires measurements of coronal magnetic fields. The large aperture coronagraph, the Chromospheric and Prominence Magnetometer and the K-Coronagraph form the COSMO instrument suite to measure magnetic fields and the polarization brightness of the low corona used to infer electron density. The large aperture coronagraph will employ a 1.5 meter fuse silica singlet lens, birefringent filters, and a spectropolarimeter to cover fields of view of up to 1 degree. It will observe the corona over a wide range of emission lines from 530.3 nm through 1083.0 nm allowing for magnetic field measurements over a wide range of coronal temperatures (e.g. FeXIV at 530.3 nm, Fe X at 637.4 nm, Fe XIII at 1074.7 and 1079.8 nm. These lines are faint and require the very large aperture. NCAR and NSF have provided funding to bring the large aperture coronagraph to a preliminary design review state by the end of 2013. As with all data from Mauna Loa, the data products from COSMO will be available to the community via the Mauna Loa website: http://mlso.hao.ucar.edu

A direct comparison of exoEarth yields for starshades and coronagraphs

NASA Astrophysics Data System (ADS)

Stark, Christopher C.; Cady, Eric J.; Clampin, Mark; Domagal-Goldman, Shawn; Lisman, Doug; Mandell, Avi M.; McElwain, Michael W.; Roberge, Aki; Robinson, Tyler D.; Savransky, Dmitry; Shaklan, Stuart B.; Stapelfeldt, Karl R.

2016-07-01

The scale and design of a future mission capable of directly imaging extrasolar planets will be influenced by the detectable number (yield) of potentially Earth-like planets. Currently, coronagraphs and starshades are being considered as instruments for such a mission. We will use a novel code to estimate and compare the yields for starshade- and coronagraph-based missions. We will show yield scaling relationships for each instrument and discuss the impact of astrophysical and instrumental noise on yields. Although the absolute yields are dependent on several yet-unknown parameters, we will present several limiting cases allowing us to bound the yield comparison.

Test technology on divergence angle of laser range finder based on CCD imaging fusion

NASA Astrophysics Data System (ADS)

Shi, Sheng-bing; Chen, Zhen-xing; Lv, Yao

2016-09-01

Laser range finder has been equipped with all kinds of weapons, such as tank, ship, plane and so on, is important component of fire control system. Divergence angle is important performance and incarnation of horizontal resolving power for laser range finder, is necessary appraised test item in appraisal test. In this paper, based on high accuracy test on divergence angle of laser range finder, divergence angle test system is designed based on CCD imaging, divergence angle of laser range finder is acquired through fusion technology for different attenuation imaging, problem that CCD characteristic influences divergence angle test is solved.

The W. M. Keck Observatory Infrared Vortex Coronagraph and a First Image of HIP 79124 B

NASA Astrophysics Data System (ADS)

Serabyn, E.; Huby, E.; Matthews, K.; Mawet, D.; Absil, O.; Femenia, B.; Wizinowich, P.; Karlsson, M.; Bottom, M.; Campbell, R.; Carlomagno, B.; Defrère, D.; Delacroix, C.; Forsberg, P.; Gomez Gonzalez, C.; Habraken, S.; Jolivet, A.; Liewer, K.; Lilley, S.; Piron, P.; Reggiani, M.; Surdej, J.; Tran, H.; Vargas Catalán, E.; Wertz, O.

2017-01-01

An optical vortex coronagraph has been implemented within the NIRC2 camera on the Keck II telescope and used to carry out on-sky tests and observations. The development of this new L‧-band observational mode is described, and an initial demonstration of the new capability is presented: a resolved image of the low-mass companion to HIP 79124, which had previously been detected by means of interferometry. With HIP 79124 B at a projected separation of 186.5 mas, both the small inner working angle of the vortex coronagraph and the related imaging improvements were crucial in imaging this close companion directly. Due to higher Strehl ratios and more relaxed contrasts in L‧ band versus H band, this new coronagraphic capability will enable high-contrast, small-angle observations of nearby young exoplanets and disks on a par with those of shorter-wavelength extreme adaptive optics coronagraphs.

Advanced Speckle Sensing for Internal Coronagraphs

NASA Technical Reports Server (NTRS)

Noecker, Charley; Shaklan, Stuart B.; Wallace, James K.; Kern, Brian D.; Give'on, Amir; Kasdin, Jeremy; Belikov, Ruslan; Kendrick, Steve

2011-01-01

A 4-8m telescope carrying a coronagraph instrument is a leading candidate for an anticipated flagship mission to detect and characterize Earth-size exoplanets in the 2020s. Many candidate coronagraph instruments have been proposed, and one has met many of the principal requirements for that mission. But the telescope and instrument will need exquisite stability and precise control of the incoming wavefront to enable detection of faint companions (10(exp -10) of the star) at an angular separation of 2-4 Airy radii. In particular, wavefront errors cause speckles in the image, and variations in those speckles can confound the exoplanet detection. This challenge is compounded by the background light from zodiacal dust around our Sun and the target star, which limits the speed with which we can estimate and correct the speckles. We are working on developing coherent speckle detection techniques that will allow rapid calibration of speckles on the science detector, allowing subtraction in post-processing or correction with deformable mirrors. The expected speed improvement allows a much quicker timeline for measurement & calibration, which reduces the required telescope stability requirement and eases both the flight system design and the challenge of ground testing. We will describe the experiments and summarize progress to date.

Advanced speckle sensing for internal coronagraphs

NASA Astrophysics Data System (ADS)

Noecker, Charley; Shaklan, Stuart; Wallace, James K.; Kern, Brian; Give'on, Amir; Kasdin, Jeremy; Belikov, Ruslan; Kendrick, Steve

2011-10-01

A 4-8m diameter telescope carrying a coronagraph instrument is a leading candidate for an anticipated flagship mission to detect and characterize Earth-size exoplanets in the 2020s.1 Many candidate coronagraph instruments have been proposed, and one is close to meeting some of the principal requirements for that mission. But the telescope and instrument will need exquisite stability and precise control of the incoming wavefront to enable detection of faint companions (10-10of the star) at an angular separation of 2-4 Airy radii. In particular, wavefront errors cause speckles in the image, and variations in those speckles can confound the exoplanet detection. This challenge is compounded by the background light from zodiacal dust around our Sun and the target star, which limits the speed with which we can estimate and correct the speckles. We are working on developing coherent speckle detection techniques that will allow rapid calibration of speckles on the science detector, allowing subtraction in post-processing or correction with deformable mirrors. The expected speed improvement allows a much quicker timeline for measurement & calibration, which reduces the required telescope stability requirement and eases both the flight system design and the challenge of ground testing. We will describe the experiments and summarize progress to date.

A comparison between different coronagraphic data reduction techniques

NASA Astrophysics Data System (ADS)

Carolo, E.; Vassallo, D.; Farinato, J.; Bergomi, M.; Bonavita, M.; Carlotti, A.; D'Orazi, V.; Greggio, D.; Magrin, D.; Mesa, D.; Pinna, E.; Puglisi, A.; Stangalini, M.; Verinaud, C.; Viotto, V.

2016-07-01

A robust post processing technique is mandatory for analysing the coronagraphic high contrast imaging data. Angular Differential Imaging (ADI) and Principal Component Analysis (PCA) are the most used approaches to suppress the quasi-static structure presents in the Point Spread Function (PSF) for revealing planets at different separations from the host star. In this work, we present the comparison between ADI and PCA applied to System of coronagraphy with High order Adaptive optics from R to K band (SHARK-NIR), which will be implemented at Large Binocular Telescope (LBT). The comparison has been carried out by using as starting point the simulated wavefront residuals of the LBT Adaptive Optics (AO) system, in different observing conditions. Accurate tests for tuning the post processing parameters to obtain the best performance from each technique were performed in various seeing conditions (0:4"-1") for star magnitude ranging from 8 to 12, with particular care in finding the best compromise between quasi static speckle subtraction and planets detection.

RxnFinder: biochemical reaction search engines using molecular structures, molecular fragments and reaction similarity.

PubMed

Hu, Qian-Nan; Deng, Zhe; Hu, Huanan; Cao, Dong-Sheng; Liang, Yi-Zeng

2011-09-01

Biochemical reactions play a key role to help sustain life and allow cells to grow. RxnFinder was developed to search biochemical reactions from KEGG reaction database using three search criteria: molecular structures, molecular fragments and reaction similarity. RxnFinder is helpful to get reference reactions for biosynthesis and xenobiotics metabolism. RxnFinder is freely available via: http://sdd.whu.edu.cn/rxnfinder. qnhu@whu.edu.cn.

X-ray beam finder

DOEpatents

Gilbert, H.W.

1983-06-16

An X-ray beam finder for locating a focal spot of an X-ray tube includes a mass of X-ray opaque material having first and second axially-aligned, parallel-opposed faces connected by a plurality of substantially identical parallel holes perpendicular to the faces and a film holder for holding X-ray sensitive film tightly against one face while the other face is placed in contact with the window of an X-ray head.

High Contrast Internal and External Coronagraph Masks Produced by Various Techniques

NASA Technical Reports Server (NTRS)

Balasubramanian, Kunjithapatha; Wilson, Daniel; White, Victor; Muller, Richard; Dickie, Matthew; Yee, Karl; Ruiz, Ronald; Shaklan, Stuart; Cady, Eric; Kern, Brian;

Stray-light analyses of the multielement telescope for imaging and spectroscopy coronagraph on Solar Orbiter

NASA Astrophysics Data System (ADS)

Sandri, Paolo; Fineschi, Silvano; Romoli, Marco; Taccola, Matteo; Landini, Federico; Da Deppo, Vania; Naletto, Giampiero; Morea, Danilo; Naughton, Denis; Antonucci, Ester

2018-01-01

The modeling of the scattering phenomena for the multielement telescope for imaging and spectroscopy (METIS) coronagraph on board the European Space Agency Solar Orbiter is reported. METIS is an inverted occultation coronagraph including two optical paths: the broadband imaging of the full corona in linearly polarized visible-light (580 to 640 nm) and the narrow-band imaging of the full corona in the ultraviolet Lyman-α (121.6 nm). METIS will have the unique opportunity of observing the solar outer atmosphere as close to the Sun as 0.28 AU and from up to 35 deg out-of-ecliptic. The stray-light simulations performed on the UV and VL channels of the METIS analyzing the contributors of surface microroughness, particulate contamination, cosmetic defects, and diffraction are reported. The results obtained with the nonsequential modality of Zemax OpticStudio are compared with two different approaches: the Monte Carlo ray trace with Advanced Systems Analysis Program (ASAP®) and a semianalytical model. The results obtained with the three independently developed approaches are in considerable agreement and show compliance to the requirement of stray-light level for both the UV and VL channels.

BS-virus-finder: virus integration calling using bisulfite sequencing data.

PubMed

Gao, Shengjie; Hu, Xuesong; Xu, Fengping; Gao, Changduo; Xiong, Kai; Zhao, Xiao; Chen, Haixiao; Zhao, Shancen; Wang, Mengyao; Fu, Dongke; Zhao, Xiaohui; Bai, Jie; Mao, Likai; Li, Bo; Wu, Song; Wang, Jian; Li, Shengbin; Yang, Huangming; Bolund, Lars; Pedersen, Christian N S

2018-01-01

DNA methylation plays a key role in the regulation of gene expression and carcinogenesis. Bisulfite sequencing studies mainly focus on calling single nucleotide polymorphism, different methylation region, and find allele-specific DNA methylation. Until now, only a few software tools have focused on virus integration using bisulfite sequencing data. We have developed a new and easy-to-use software tool, named BS-virus-finder (BSVF, RRID:SCR_015727), to detect viral integration breakpoints in whole human genomes. The tool is hosted at https://github.com/BGI-SZ/BSVF. BS-virus-finder demonstrates high sensitivity and specificity. It is useful in epigenetic studies and to reveal the relationship between viral integration and DNA methylation. BS-virus-finder is the first software tool to detect virus integration loci by using bisulfite sequencing data. © The Authors 2017. Published by Oxford University Press.

Photodetectors on Coronagraph Mask for Pointing Control

NASA Technical Reports Server (NTRS)

Balasubramanian, Kunjithapatham

2007-01-01

It has been proposed to install a symmetrical array of photodetectors about the center of the mask of a coronagraph of the type used to search for planets orbiting remote stars. The purpose of this installation is to utilize the light from a star under observation as a guide in pointing the telescope. Simple arithmetic processing of the outputs of the photodetectors would provide indications of the lateral position of the center of the mask relative to the center of the image of the star. These indications could serve as pointing-control feedback signals for adjusting the telescope aim to center the image of the star on the mask. The widths of central mask areas available for placement of photodetectors differ among coronagraph designs, typically ranging upward from about 100 m. Arrays of photodetectors can readily be placed within areas in this size range. The number of detectors in an array could be as small as 4 or as large as 64. The upper limit on the number of detectors would be determined according to the extent of the occulting pattern and the number of functionalities, in addition to pointing control, to be served by the array.

Spherical Occulter Coronagraph Cubesat

NASA Technical Reports Server (NTRS)

Davila, Joseph M. (Inventor); Rabin, Douglas M. (Inventor); Reginald, Nelson (Inventor); Gong, Qian (Inventor); Shah, Neerav (Inventor); Chamberlin, Phillip C. (Inventor)

2018-01-01

The present invention relates to a space-based instrument which provides continuous coronal electron temperature and velocity images, for a predetermined period of time, thereby improving the understanding of coronal evolution and how the solar wind and Coronal Mass Ejection transients evolve from the low solar atmosphere through the heliosphere for an entire solar rotation. Specifically, the present invention relates to using a 6U spherical occulter coronagraph CubeSat, and a relative navigational system (RNS) that controls the position of the spacecraft relative to the occulting sphere. The present invention innovatively deploys a free-flying spherical occulter, and after deployment, the actively controlled CubeSat will provide an inertial formation flying with the spherical occulter and Sun.

Recent Improvements to the Finite-Fault Rupture Detector Algorithm: FinDer II

NASA Astrophysics Data System (ADS)

Smith, D.; Boese, M.; Heaton, T. H.

2015-12-01

Constraining the finite-fault rupture extent and azimuth is crucial for accurately estimating ground-motion in large earthquakes. Detecting and modeling finite-fault ruptures in real-time is thus essential to both earthquake early warning (EEW) and rapid emergency response. Following extensive real-time and offline testing, the finite-fault rupture detector algorithm, FinDer (Böse et al., 2012 & 2015), was successfully integrated into the California-wide ShakeAlert EEW demonstration system. Since April 2015, FinDer has been scanning real-time waveform data from approximately 420 strong-motion stations in California for peak ground acceleration (PGA) patterns indicative of earthquakes. FinDer analyzes strong-motion data by comparing spatial images of observed PGA with theoretical templates modeled from empirical ground-motion prediction equations (GMPEs). If the correlation between the observed and theoretical PGA is sufficiently high, a report is sent to ShakeAlert including the estimated centroid position, length, and strike, and their uncertainties, of an ongoing fault rupture. Rupture estimates are continuously updated as new data arrives. As part of a joint effort between USGS Menlo Park, ETH Zurich, and Caltech, we have rewritten FinDer in C++ to obtain a faster and more flexible implementation. One new feature of FinDer II is that multiple contour lines of high-frequency PGA are computed and correlated with templates, allowing the detection of both large earthquakes and much smaller (~ M3.5) events shortly after their nucleation. Unlike previous EEW algorithms, FinDer II thus provides a modeling approach for both small-magnitude point-source and larger-magnitude finite-fault ruptures with consistent error estimates for the entire event magnitude range.

APIC. Absolute Position Interfero-Coronagraph for direct exoplanet detection

NASA Astrophysics Data System (ADS)

Allouche, F.; Glindemann, A.; Aristidi, E.; Vakili, F.

2009-06-01

Context: For detecting and directly imaging exoplanets, coronagraphic methods are mandatory when the intensity ratio between a star and its orbiting planet can be as large as 10^6. In 1996, a concept of an achromatic interfero-coronagraph (AIC) was presented for detecting very faint stellar companions, such as exoplanets. Aims: We present a modified version of the AIC not only permitting these faint companions to be detected but also their relative position to be determined with respect to the parent star, a problem that was not solved in the original design of the AIC. Methods: In our modified design, two cylindrical lens doublets were used to remove the 180° ambiguity introduced by the AIC's original design. Results: Our theoretical study and the numerical computations show that the axis of symmetry is destroyed when one of the cylindrical doublets is rotated around the optical axis.

Pinhole X-ray/coronagraph optical systems concept definition study

NASA Technical Reports Server (NTRS)

Zehnpfenning, T. F.; Rappaport, S.; Wattson, R. B.

1980-01-01

The Pinhole X-ray/Coronagraph Concept utilizes the long baselines possible in Earth orbit with the space transportation system (shuttle) to produce observations of solar X-ray emission features at extremely high spatial resolution (up to 0.1 arc second) and high energy (up to 100 keV), and also white light and UV observations of the inner and outer corona at high spatial and/or spectral resolution. An examination of various aspects of a preliminary version of the X-ray Pinhole/Coronagraph Concept is presented. For this preliminary version, the instrument package will be carried in the shuttle bay on a mounting platform, and will be connected to the occulter with a deployable boom such as an Astromast. Generally, the spatial resolution, stray light levels, and minimum limb observing angles improve as the boom length increases. However, the associated engineering problems also become more serious with greater boom lengths.

Project Blue: Optical Coronagraphic Imaging Search for Terrestrial-class Exoplanets in Alpha Centauri

NASA Astrophysics Data System (ADS)

Morse, Jon; Project Blue team

2018-01-01

Project Blue is a coronagraphic imaging space telescope mission designed to search for habitable worlds orbiting the nearest Sun-like stars in the Alpha Centauri system. With a 45-50 cm baseline primary mirror size, Project Blue will perform a reconnaissance of the habitable zones of Alpha Centauri A and B in blue light and one or two longer wavelength bands to determine the hue of any planets discovered. Light passing through the off-axis telescope feeds into a coronagraphic instrument that forms the heart of the mission. Various coronagraph designs are being considered, such as phase induced amplitude apodization (PIAA), vector vortex, etc. Differential orbital image processing techniques will be employed to analyze the data for faint planets embedded in the residual glare of the parent star. Project Blue will advance our knowledge about the presence or absence of terrestrial-class exoplanets in the habitable zones and measure the brightness of zodiacal dust around each star, which will aid future missions in planning their observational surveys of exoplanets. It also provides on-orbit demonstration of high-contrast coronagraphic imaging technologies and techniques that will be useful for planning and implementing future space missions by NASA and other space agencies. We present an overview of the science goals, mission concept and development schedule. As part of our cooperative agreement with NASA, the Project Blue team intends to make the data available in a publicly accessible archive.

The Subaru Coronagraphic Extreme AO project: an XAO4ELT precursor

NASA Astrophysics Data System (ADS)

Martinache, F.

2011-09-01

A diffraction-limited 30-meter telescope theoretically provides a 10 mas resolution limit in the near infrared. Modern coronagraphs like the Vortex, the 8OPM and the PIAA offer the means to take full advantage of this angular resolution allowing to explore at high contrast, the innermost parts of nearby planetary systems to within a fraction of an astronomical unit: an unprecedented capability that will revolutionize our understanding of planet formation across the habitable zone. A precursor of such a system is the Subaru Coronagraphic Extreme AO project. SCExAO combines a high performance PIAA-based coronagraph downstream Subaru's AO188 AO system and a 1024-actuator MEMS DM. SCExAO employs advanced wavefront control schemes that make high contrast detection possible at 1 λ/D, providing for a few cases, the possibility to detect the light reflected by exoplanets. Moderate-high contrast detection in the super-resolution regime (<λ/D) is also possible using well calibrated closure quantities like closure-phase for a non-redundant (masked) aperture and its extension for to arbitrary apertures (Kernel-phase). Lessons learned from SCExAO's incremental deployment plan during its first 2011 engineering campaign provides insights that will guide future development of high contrast instrumentation on an ELT.

Post-processing images from the WFIRST-AFTA coronagraph testbed

NASA Astrophysics Data System (ADS)

Zimmerman, Neil T.; Ygouf, Marie; Pueyo, Laurent; Soummer, Remi; Perrin, Marshall D.; Mennesson, Bertrand; Cady, Eric; Mejia Prada, Camilo

2016-01-01

The concept for the exoplanet imaging instrument on WFIRST-AFTA relies on the development of mission-specific data processing tools to reduce the speckle noise floor. No instruments have yet functioned on the sky in the planet-to-star contrast regime of the proposed coronagraph (1E-8). Therefore, starlight subtraction algorithms must be tested on a combination of simulated and laboratory data sets to give confidence that the scientific goals can be reached. The High Contrast Imaging Testbed (HCIT) at Jet Propulsion Lab has carried out several technology demonstrations for the instrument concept, demonstrating 1E-8 raw (absolute) contrast. Here, we have applied a mock reference differential imaging strategy to HCIT data sets, treating one subset of images as a reference star observation and another subset as a science target observation. We show that algorithms like KLIP (Karhunen-Loève Image Projection), by suppressing residual speckles, enable the recovery of exoplanet signals at contrast of order 2E-9.

Applications of the Integrated High-Performance CMOS Image Sensor to Range Finders — from Optical Triangulation to the Automotive Field

PubMed Central

Wu, Jih-Huah; Pen, Cheng-Chung; Jiang, Joe-Air

2008-01-01

With their significant features, the applications of complementary metal-oxide semiconductor (CMOS) image sensors covers a very extensive range, from industrial automation to traffic applications such as aiming systems, blind guidance, active/passive range finders, etc. In this paper CMOS image sensor-based active and passive range finders are presented. The measurement scheme of the proposed active/passive range finders is based on a simple triangulation method. The designed range finders chiefly consist of a CMOS image sensor and some light sources such as lasers or LEDs. The implementation cost of our range finders is quite low. Image processing software to adjust the exposure time (ET) of the CMOS image sensor to enhance the performance of triangulation-based range finders was also developed. An extensive series of experiments were conducted to evaluate the performance of the designed range finders. From the experimental results, the distance measurement resolutions achieved by the active range finder and the passive range finder can be better than 0.6% and 0.25% within the measurement ranges of 1 to 8 m and 5 to 45 m, respectively. Feasibility tests on applications of the developed CMOS image sensor-based range finders to the automotive field were also conducted. The experimental results demonstrated that our range finders are well-suited for distance measurements in this field. PMID:27879789

A coronagraph based on two spatial light modulators for active amplitude apodizing and phase corrections

NASA Astrophysics Data System (ADS)

Dou, Jiangpei; Ren, Deqing; Zhang, Xi; Zhu, Yongtian; Zhao, Gang; Wu, Zhen; Chen, Rui; Liu, Chengchao; Yang, Feng; Yang, Chao

2014-08-01

Almost all high-contrast imaging coronagraphs proposed until now are based on passive coronagraph optical components. Recently, Ren and Zhu proposed for the first time a coronagraph that integrates a liquid crystal array (LCA) for the active pupil apodizing and a deformable mirror (DM) for the phase corrections. Here, for demonstration purpose, we present the initial test result of a coronagraphic system that is based on two liquid crystal spatial light modulators (SLM). In the system, one SLM is served as active pupil apodizing and amplitude correction to suppress the diffraction light; another SLM is used to correct the speckle noise that is caused by the wave-front distortions. In this way, both amplitude and phase error can be actively and efficiently compensated. In the test, we use the stochastic parallel gradient descent (SPGD) algorithm to control two SLMs, which is based on the point spread function (PSF) sensing and evaluation and optimized for a maximum contrast in the discovery area. Finally, it has demonstrated a contrast of 10-6 at an inner working angular distance of ~6.2 λ/D, which is a promising technique to be used for the direct imaging of young exoplanets on ground-based telescopes.

ASPIICS/PROBA-3 formation flying solar coronagraph: Stray light analysis and optimization of the occulter

NASA Astrophysics Data System (ADS)

Landini, F.; Mazzoli, A.; Venet, M.; Vivès, S.; Romoli, M.; Lamy, P.; Massone, G.

2017-11-01

The "Association de Satellites Pour l'Imagerie et l'Interferometrie de la Couronne Solaire", ASPIICS, selected by ESA for the PROBA-3 mission, heralds the next generation of coronagraph for solar research, exploiting formation flying to gain access to the inner corona under eclipse-like conditions for long periods of time. A detailed description of the ASPIICS instrument and of its scientific objectives can be found in [1]. ASPIICS is distributed on the two PROBA 3 spacecrafts (S/C) separated by 150 m. The coronagraph optical assembly is hosted by the "coronagraph S/C" protected from direct solar disk light by the occulting disk on the "occulter S/C". The most critical issue in the design of a solar coronagraph is the reduction of the stray light due to the diffraction and scattering of the solar disk light by the occulter, the aperture and the optics. In the present article, we deal with two of these issues: - The analysis of the stray light inside the telescope. - The optimization of the external occulter edge, in order to eliminate the Poisson spot behind the occulter and to lower the stray light level going through the entrance pupil of the telescope. This work was performed in the framework of the ESA STARTIGER program which took place at the Laboratoire d'Astrophysique de Marseille (LAM) during a 6-month period from September 2009 to March 2010. In general, it is a very complicated task to combine the above two stray light issues together in the simulation and design phase as it requires to consider the propagation inside the telescope of the light diffracted by the external occulter. Actually, the present literature only reports diffraction calculations performed for simple occulting systems (i.e., two disks and serrated disk). A more pragmatic approach, also driven by the tight schedule of the STARTIGER program, is to separate the two contributions, and perform two different stray light analyses. This paper is dedicated to the description of both analyses

Western Michigan University Libraries' "Electronic Journal Finder"

ERIC Educational Resources Information Center

Gedeon, Randle; Boston, George

2005-01-01

This article describes the development of the "Electronic Journal Finder," a TDNet installation for the University Libraries of Western Michigan University. Topics covered include: rationale for subscription project timeline, content, product customization, set-up, maintenance issues, reporting functions, directing URL links, searching…

Problem-based Learning Using the Online Medicare Part D Plan Finder Tool

PubMed Central

Stebbins, Marilyn R.; Lai, Eric; Smith, Amanda R.; Lipton, Helene Levens

2008-01-01

Objectives To implement didactic and problem-based learning curricular innovations aimed at increasing students' knowledge of Medicare Part D, improving their ability to apply the online Medicare Prescription Drug Plan Finder tool to a patient case, and improving their attitudes toward patient advocacy for Medicare beneficiaries. Methods A survey instrument and a case-based online Medicare Prescription Drug Plan Finder tool exercise were administered to a single group (n = 120) of second-year pharmacy graduate students prior to and following completion of a course on health policy. Three domains (knowledge, skill mastery and attitudes) were measured before and after two 90-minute lectures on Medicare Part D. Results The online Medicare Prescription Drug Plan Finder exercise and Medicare Part D didactic lectures had positive effects on students' knowledge of Part D, attitudes toward patient advocacy, and ability to accurately use the Medicare Prescription Drug Plan Finder tool. Conclusions The success of these didactic and problem-based curricular innovations in improving pharmacy students' knowledge, skills, and attitudes regarding Part D warrants further evaluation to determine their portability to clinical settings and other pharmacy schools. PMID:18698399

Microlithography and resist technology information at your fingertips via SciFinder

NASA Astrophysics Data System (ADS)

Konuk, Rengin; Macko, John R.; Staggenborg, Lisa

1997-07-01

Finding and retrieving the information you need about microlithography and resist technology in a timely fashion can make or break your competitive edge in today's business environment. Chemical Abstracts Service (CAS) provides the most complete and comprehensive database of the chemical literature in the CAplus, REGISTRY, and CASREACT files including 13 million document references, 15 million substance records and over 1.2 million reactions. This includes comprehensive coverage of positive and negative resist formulations and processing, photoacid generation, silylation, single and multilayer resist systems, photomasks, dry and wet etching, photolithography, electron-beam, ion-beam and x-ray lithography technologies and process control, optical tools, exposure systems, radiation sources and steppers. Journal articles, conference proceedings and patents related to microlithography and resist technology are analyzed and indexed by scientific information analysts with strong technical background in these areas. The full CAS database, which is updated weekly with new information, is now available at your desktop, via a convenient, user-friendly tool called 'SciFinder.' Author, subject and chemical substance searching is simplified by SciFinder's smart search features. Chemical substances can be searched by chemical structure, chemical name, CAS registry number or molecular formula. Drawing chemical structures in SciFinder is easy and does not require compliance with CA conventions. Built-in intelligence of SciFinder enables users to retrieve substances with multiple components, tautomeric forms and salts.

Photographic coronagraph, Skylab particulate experiment T025. [earth atmospheric pollution and Kohoutek Comet monitoring

NASA Technical Reports Server (NTRS)

Giovane, F.; Schuerman, D. W.; Greenberg, J. M.

1977-01-01

A photographic coronagraph, built to monitor Skylab's extravehicular contamination, is described. This versatile instrument was used to observe the earth's vertical aerosol distribution and Comet Kohoutek (1973f) near perihelion. Although originally designed for deployment from the solar airlock, the instrument was modified for EVA operation when the airlock was rendered unusable. The results of the observations made in four EVA's were almost completely ruined by the failure of a Skylab operational camera used with the coronagraph. Nevertheless, an aerosol layer at 48 km was discovered in the southern hemisphere from the few useful photographs.

An Overview of the Formation and Attitude Control System for the Terrestrial Planet Finder Formation Flying Interferometer

NASA Technical Reports Server (NTRS)

Scharf, Daniel P.; Hadaegh, Fred Y.; Rahman, Zahidul H.; Shields, Joel F.; Singh, Gurkipal; Wette, Matthew R.

2004-01-01

The Terrestrial Planet Finder formation flying Interferometer (TPF-I) will be a five-spacecraft, precision formation operating near the second Sun-Earth Lagrange point. As part of technology development for TPF-I, a formation and attitude control system (FACS) is being developed that achieves the precision and functionality needed for the TPF-I formation and that will be demonstrated in a distributed, real-time simulation environment. In this paper we present an overview of FACS and discuss in detail its formation estimation, guidance and control architectures and algorithms. Since FACS is currently being integrated into a high-fidelity simulation environment, component simulations demonstrating algorithm performance are presented.

An Overview of the Formation and Attitude Control System for the Terrestrial Planet Finder Formation Flying Interferometer

NASA Technical Reports Server (NTRS)

Scharf, Daniel P.; Hadaegh, Fred Y.; Rahman, Zahidul H.; Shields, Joel F.; Singh, Gurkipal

2004-01-01

The Terrestrial Planet Finder formation flying Interferometer (TPF-I) will be a five-spacecraft, precision formation operating near a Sun-Earth Lagrange point. As part of technology development for TPF-I, a formation and attitude control system (FACS) is being developed that achieves the precision and functionality associated with the TPF-I formation. This FACS will be demonstrated in a distributed, real-time simulation environment. In this paper we present an overview of the FACS and discuss in detail its constituent formation estimation, guidance and control architectures and algorithms. Since the FACS is currently being integrated into a high-fidelity simulation environment, component simulations demonstrating algorithm performance are presented.

White-light optical vortex coronagraph

NASA Astrophysics Data System (ADS)

Kanburapa, Prachyathit

An optical vortex is characterized by a dark core of destructive interference in a light beam. One of the methods commonly employed to create an optical vortex is by using a computer-generated hologram. A vortex hologram pattern is computed from the interference pattern between a reference plane wave and a vortex wave, resulting in a forked grating pattern. In astronomy, an optical vortex coronagraph is one of the most promising high contrast imaging techniques for the direct imaging of extra-solar planets. Direct imaging of extra-solar planets is a challenging task since the brightness of the parent star is extremely high compared to its orbiting planets. The on-axis light from the parent star gets diffracted in the coronagraph, forming a "ring of fire" pattern, whereas the slightly off-axis light from the planet remains intact. Lyot stop can then be used to block the ring of fire pattern, thus allowing only the planetary light to get through to the imaging camera. Contrast enhancements of 106 or more are possible, provided the vortex lens (spiral phase plate) has exceptional optical quality. By using a vortex hologram with a 4 microm pitch, and an f/300 focusing lens, we were able to demonstrate the creation of a "ring of fire" using a white light emitting diode as a source. A dispersion compensating linear diffraction grating of 4 microm pitch was used to bring the rings together to form a single white light ring of fire. To our knowledge, this is the first time a vortex hologram based OVC has been demonstrated, resulting in a well-formed white light ring of fire. Experimental results show measured power contrast of 1/515 when HeNe laser source was used as a light source and 1/77 when using a white light emitting diode.

The Subaru Coronagraphic Extreme AO Project: Progress and Upgrades

NASA Astrophysics Data System (ADS)

Jovanovic, Nemanja; Martinache, F.; Guyon, O.; Clergeon, C.; Garrel, V.

2013-01-01

The Subaru Coronagraphic Extreme AO (SCExAO) instrument consists of a high performance Phase Induced Amplitude Apodisation (PIAA) coronagraph combined with an extreme Adaptive Optics (AO) system operating in the near-infrared (H band). The extreme AO system driven by the 2000 element deformable mirror will allow for Strehl ratios>90% to be achieved in the H-band when it goes closed loop. This makes the SCExAO instrument a powerful platform for high contrast imaging down to angular separations of the order of 1 λ/D. In this paper we report on the recent progress in regards to the development of the instrument, which includes the addition of a visible bench that makes use of the light at shorter wavelengths not currently utilized by SCExAO and closing the loop on the tip/tilt wavefront sensor. We will also discuss two exciting guest instruments which will expand the capabilities of SCExAO over the next few years; namely CHARIS which is a integral field spectrograph as well as VAMPIRES, a visible aperture masking experiment based on polarimetric analysis of circumstellar disks.

A Flight Photon Counting Camera for the WFIRST Coronagraph

NASA Astrophysics Data System (ADS)

Morrissey, Patrick

2018-01-01

A photon counting camera based on the Teledyne-e2v CCD201-20 electron multiplying CCD (EMCCD) is being developed for the NASA WFIRST coronagraph, an exoplanet imaging technology development of the Jet Propulsion Laboratory (Pasadena, CA) that is scheduled to launch in 2026. The coronagraph is designed to directly image planets around nearby stars, and to characterize their spectra. The planets are exceedingly faint, providing signals similar to the detector dark current, and require the use of photon counting detectors. Red sensitivity (600-980nm) is preferred to capture spectral features of interest. Since radiation in space affects the ability of the EMCCD to transfer the required single electron signals, care has been taken to develop appropriate shielding that will protect the cameras during a five year mission. In this poster, consideration of the effects of space radiation on photon counting observations will be described with the mitigating features of the camera design. An overview of the current camera flight system electronics requirements and design will also be described.

Applications of the Integrated High-Performance CMOS Image Sensor to Range Finders - from Optical Triangulation to the Automotive Field.

PubMed

Wu, Jih-Huah; Pen, Cheng-Chung; Jiang, Joe-Air

2008-03-13

With their significant features, the applications of complementary metal-oxidesemiconductor (CMOS) image sensors covers a very extensive range, from industrialautomation to traffic applications such as aiming systems, blind guidance, active/passiverange finders, etc. In this paper CMOS image sensor-based active and passive rangefinders are presented. The measurement scheme of the proposed active/passive rangefinders is based on a simple triangulation method. The designed range finders chieflyconsist of a CMOS image sensor and some light sources such as lasers or LEDs. Theimplementation cost of our range finders is quite low. Image processing software to adjustthe exposure time (ET) of the CMOS image sensor to enhance the performance oftriangulation-based range finders was also developed. An extensive series of experimentswere conducted to evaluate the performance of the designed range finders. From theexperimental results, the distance measurement resolutions achieved by the active rangefinder and the passive range finder can be better than 0.6% and 0.25% within themeasurement ranges of 1 to 8 m and 5 to 45 m, respectively. Feasibility tests onapplications of the developed CMOS image sensor-based range finders to the automotivefield were also conducted. The experimental results demonstrated that our range finders arewell-suited for distance measurements in this field.

ALICE Data Release: A Revaluation of HST-NICMOS Coronagraphic Images

NASA Astrophysics Data System (ADS)

Hagan, J. Brendan; Choquet, Élodie; Soummer, Rémi; Vigan, Arthur

2018-04-01

The Hubble Space Telescope NICMOS instrument was used from 1997 to 2008 to perform coronagraphic observations of about 400 targets. Most of them were part of surveys looking for substellar companions or resolved circumstellar disks to young nearby stars, making the NICMOS coronagraphic archive a valuable database for exoplanets and disks studies. As part of the Archival Legacy Investigations of Circumstellar Environments program, we have consistently reprocessed a large fraction of the NICMOS coronagrahic archive using advanced starlight subtraction methods. We present here the high-level science products of these re-analyzed data, which we delivered back to the community through the Mikulski Archive for Space Telescopes: doi:10.17909/T9W89V. We also present the second version of the HCI-FITS format (for High-Contrast Imaging FITS format), which we developed as a standard format for data exchange of imaging reduced science products. These re-analyzed products are openly available for population statistics studies, characterization of specific targets, or detected point-source identification.

Exploration of the environments of nearby stars with the NICMOS coronagraph: instrumental performance considerations

NASA Astrophysics Data System (ADS)

Schneider, Glenn; Thompson, Rodger I.; Smith, Bradford A.; Terrile, Richard J.

1998-08-01

The Near IR Camera and Multi-Object Spectrometer (NICMOS), installed into the Hubble Space Telescope (HST) in February 1997, incorporates a coronagraphic imaging capability. The coronagraph is comprised of two optical elements. The camera 2 field divider mirror, upon which the HST f/24 input beam is imaged, includes a 170 micrometers diameter hole which contains approximately 93 percent of the encircled energy from a stellar Point Spread Function (PSF) at a wavelength of 1.6 micrometers . The coronagraphic hole lowers both the diffracted energy in the surrounding region by reducing the high spatial frequency components of the occulted core of the PSF< and down stream scattering. The geometrical radius of this occulting spot, when re-imaged through the camera 2 f/45 optics, is approximately 4 pixels at the detector focal plane. An oversized cold pupil-plane mask, with radial structures co-aligned with the HST secondary mirror spider, acts over the whole 19.1 inch by 19.2 field to further reduce the diffracted energy in the direction of the spider vanes. The absolute performance levels of the coronagraph were ascertained during the servicing mission observatory verification program. Using a differential imaging strategy we expect to achieve statistically significant detectors of sub-stellar companions at 1.6 micrometers with a (Delta) H of approximately 10 and separations as close as 0.5 inch. The NICMOS environments of nearby stars programs is exploiting this capability in systematic surveys of nearby, and young stars searching for brown dwarfs and giant planets, and protoplanetary disks around main-sequence stars.

A new airborne laser rangefinder dynamic target simulator for non-stationary environment

NASA Astrophysics Data System (ADS)

Ma, Pengge; Pang, Dongdong; Yi, Yang

2017-11-01

For the non-stationary environment simulation in laser range finder product testing, a new dynamic target simulation system is studied. First of all, the three-pulsed laser ranging principle, laser target signal composition and mathematical representation are introduced. Then, the actual nonstationary working environment of laser range finder is analyzed, and points out that the real sunshine background light clutter and target shielding effect in laser echo become the main influencing factors. After that, the dynamic laser target signal simulation method is given. Eventlly, the implementation of automatic test system based on arbitrary waveform generator is described. Practical application shows that the new echo signal automatic test system can simulate the real laser ranging environment of laser range finder, and is suitable for performance test of products.

An Off-Axis Four-Quadrant Phase Mask (FQPM) Coronagraph for Palomar: High-Contrast Near Bright Stars Imager

NASA Technical Reports Server (NTRS)

Haguenauer, Pierre; Serabyn, Eugene; Bloemhof, Eric E.; Troy, Mitchell; Wallace, James K.; Koresko, Chris D.; Mennesson, Bertrand

2005-01-01

Direct detection of planets around nearby stars requires the development of high-contrast imaging techniques because of the high difference between their respective fluxes. This led us to test a new coronagraphic approach based on the use of phase mask instead of dark occulting ones. Combined with high-level wavefront correction on an unobscured off-axis section of a large telescope, this method allows imaging very close to the star. Calculations indicate that for a given ground-based on-axis telescope, use of such an off-axis coronagraph provides a near-neighbor detection capability superior to that of a traditional coronagraph utilizing the full telescope aperture. Setting up a laboratory experiment working in near infrared allowed us to demonstrate the principle of the method, and a rejection of 2000:1 has already been achieved.

SysFinder: A customized platform for search, comparison and assisted design of appropriate animal models based on systematic similarity.

PubMed

Yang, Shuang; Zhang, Guoqing; Liu, Wan; Wang, Zhen; Zhang, Jifeng; Yang, Dongshan; Chen, Y Eugene; Sun, Hong; Li, Yixue

2017-05-20

Animal models are increasingly gaining values by cross-comparisons of response or resistance to clinical agents used for patients. However, many disease mechanisms and drug effects generated from animal models are not transferable to human. To address these issues, we developed SysFinder (http://lifecenter.sgst.cn/SysFinder), a platform for scientists to find appropriate animal models for translational research. SysFinder offers a "topic-centered" approach for systematic comparisons of human genes, whose functions are involved in a specific scientific topic, to the corresponding homologous genes of animal models. Scientific topic can be a certain disease, drug, gene function or biological pathway. SysFinder calculates multi-level similarity indexes to evaluate the similarities between human and animal models in specified scientific topics. Meanwhile, SysFinder offers species-specific information to investigate the differences in molecular mechanisms between humans and animal models. Furthermore, SysFinder provides a user-friendly platform for determination of short guide RNAs (sgRNAs) and homology arms to design a new animal model. Case studies illustrate the ability of SysFinder in helping experimental scientists. SysFinder is a useful platform for experimental scientists to carry out their research in the human molecular mechanisms. Copyright © 2017 Institute of Genetics and Developmental Biology, Chinese Academy of Sciences, and Genetics Society of China. Published by Elsevier Ltd. All rights reserved.

A Novel MEMS Gyro North Finder Design Based on the Rotation Modulation Technique

PubMed Central

Zhang, Yongjian; Zhou, Bin; Song, Mingliang; Hou, Bo; Xing, Haifeng; Zhang, Rong

2017-01-01

Gyro north finders have been widely used in maneuvering weapon orientation, oil drilling and other areas. This paper proposes a novel Micro-Electro-Mechanical System (MEMS) gyroscope north finder based on the rotation modulation (RM) technique. Two rotation modulation modes (static and dynamic modulation) are applied. Compared to the traditional gyro north finders, only one single MEMS gyroscope and one MEMS accelerometer are needed, reducing the total cost since high-precision gyroscopes and accelerometers are the most expensive components in gyro north finders. To reduce the volume and enhance the reliability, wireless power and wireless data transmission technique are introduced into the rotation modulation system for the first time. To enhance the system robustness, the robust least square method (RLSM) and robust Kalman filter (RKF) are applied in the static and dynamic north finding methods, respectively. Experimental characterization resulted in a static accuracy of 0.66° and a dynamic repeatability accuracy of 1°, respectively, confirming the excellent potential of the novel north finding system. The proposed single gyro and single accelerometer north finding scheme is universal, and can be an important reference to both scientific research and industrial applications. PMID:28452936

Coronagraph particulate measurements. Skylab flight experiment T025

NASA Technical Reports Server (NTRS)

Greenberg, J. M.; Schuerman, D. W.; Giovane, F.; Wang, R. T.; Hardy, D. C.

1975-01-01

Major results of the Skylab T025 Coronagraph experiment designed to monitor the particulate contamination about the spacecraft and to study the earth's atmospheric aerosol distribution are presented. A model for comet outbursts based on the properties of amorphous ice and ground based narrow-band and white light photography of comet Kohoutek ten days to perihelion are included. The effect of atmospheric refraction on the analysis of the T025 atmospheric data was also investigated.

Large Stroke, Picometer Resolution Hexapod for Dynamic Mirror Positioning

NASA Technical Reports Server (NTRS)

Ohl, Raymond G.; Blaurock, Carl

2006-01-01

Viewgraph presentation reviews the Fast Picometer Mirror mounting (FPMM) for the Terrestrial Planet Finder Coronagraph (TPF-C). Included in the presentation are slides with an overviews of the TPF-C, the requirements of the FPMM, the selection of the materials using the ACE system, and the architecture of the FPMM.

Moon-based UV reflecting coronagraph

NASA Astrophysics Data System (ADS)

Vial, J. C.; Koutchmy, S.; Smartt, R. N.

1994-06-01

UV observations of the solar disc, and above the limb, have evidenced a wide range of possible diagnostics, especially in the Lyman alpha line. On the disc, Lyman alpha traces the magnetic (sometimes unexpected) structuring of the top of the atmosphere; out from the limb, it allows measurement of radial velocities up to a few solar radii where most optical techniques fail. Other diagnostics include the kinematics of ejections (e.g. Coronal Mass Ejections (CMEs), but also small-scale rapidly evolving plasmoids). We propose a dual-channel reflecting coronagraph combining relatively-high angular resolution (0.2-0.4 inches) with large spatial (2.5 solar radii from Sun center) and temporal coverage. The advantages offered by a Moon-based instrument are discussed.

Evaluating High-Throughput Ab Initio Gene Finders to Discover Proteins Encoded in Eukaryotic Pathogen Genomes Missed by Laboratory Techniques

PubMed Central

Goodswen, Stephen J.; Kennedy, Paul J.; Ellis, John T.

2012-01-01

Next generation sequencing technology is advancing genome sequencing at an unprecedented level. By unravelling the code within a pathogen’s genome, every possible protein (prior to post-translational modifications) can theoretically be discovered, irrespective of life cycle stages and environmental stimuli. Now more than ever there is a great need for high-throughput ab initio gene finding. Ab initio gene finders use statistical models to predict genes and their exon-intron structures from the genome sequence alone. This paper evaluates whether existing ab initio gene finders can effectively predict genes to deduce proteins that have presently missed capture by laboratory techniques. An aim here is to identify possible patterns of prediction inaccuracies for gene finders as a whole irrespective of the target pathogen. All currently available ab initio gene finders are considered in the evaluation but only four fulfil high-throughput capability: AUGUSTUS, GeneMark_hmm, GlimmerHMM, and SNAP. These gene finders require training data specific to a target pathogen and consequently the evaluation results are inextricably linked to the availability and quality of the data. The pathogen, Toxoplasma gondii, is used to illustrate the evaluation methods. The results support current opinion that predicted exons by ab initio gene finders are inaccurate in the absence of experimental evidence. However, the results reveal some patterns of inaccuracy that are common to all gene finders and these inaccuracies may provide a focus area for future gene finder developers. PMID:23226328

Validation of the Applied Biosystems RapidFinder Shiga Toxin-Producing E. coli (STEC) Detection Workflow.

PubMed

Cloke, Jonathan; Matheny, Sharon; Swimley, Michelle; Tebbs, Robert; Burrell, Angelia; Flannery, Jonathan; Bastin, Benjamin; Bird, Patrick; Benzinger, M Joseph; Crowley, Erin; Agin, James; Goins, David; Salfinger, Yvonne; Brodsky, Michael; Fernandez, Maria Cristina

2016-11-01

The Applied Biosystems™ RapidFinder™ STEC Detection Workflow (Thermo Fisher Scientific) is a complete protocol for the rapid qualitative detection of Escherichia coli (E. coli) O157:H7 and the "Big 6" non-O157 Shiga-like toxin-producing E. coli (STEC) serotypes (defined as serogroups: O26, O45, O103, O111, O121, and O145). The RapidFinder STEC Detection Workflow makes use of either the automated preparation of PCR-ready DNA using the Applied Biosystems PrepSEQ™ Nucleic Acid Extraction Kit in conjunction with the Applied Biosystems MagMAX™ Express 96-well magnetic particle processor or the Applied Biosystems PrepSEQ Rapid Spin kit for manual preparation of PCR-ready DNA. Two separate assays comprise the RapidFinder STEC Detection Workflow, the Applied Biosystems RapidFinder STEC Screening Assay and the Applied Biosystems RapidFinder STEC Confirmation Assay. The RapidFinder STEC Screening Assay includes primers and probes to detect the presence of stx1 (Shiga toxin 1), stx2 (Shiga toxin 2), eae (intimin), and E. coli O157 gene targets. The RapidFinder STEC Confirmation Assay includes primers and probes for the "Big 6" non-O157 STEC and E. coli O157:H7. The use of these two assays in tandem allows a user to detect accurately the presence of the "Big 6" STECs and E. coli O157:H7. The performance of the RapidFinder STEC Detection Workflow was evaluated in a method comparison study, in inclusivity and exclusivity studies, and in a robustness evaluation. The assays were compared to the U.S. Department of Agriculture (USDA), Food Safety and Inspection Service (FSIS) Microbiology Laboratory Guidebook (MLG) 5.09: Detection, Isolation and Identification of Escherichia coli O157:H7 from Meat Products and Carcass and Environmental Sponges for raw ground beef (73% lean) and USDA/FSIS-MLG 5B.05: Detection, Isolation and Identification of Escherichia coli non-O157:H7 from Meat Products and Carcass and Environmental Sponges for raw beef trim. No statistically significant

Apodized Pupil Lyot Coronagraphs for Arbitrary Apertures. II. Theoretical Properties and Application to Extremely Large Telescopes

NASA Astrophysics Data System (ADS)

Soummer, Rémi; Pueyo, Laurent; Ferrari, André; Aime, Claude; Sivaramakrishnan, Anand; Yaitskova, Natalia

2009-04-01

We study the application of Lyot coronagraphy to future Extremely Large Telescopes (ELTs), showing that Apodized Pupil Lyot Coronagraphs enable high-contrast imaging for exoplanet detection and characterization with ELTs. We discuss the properties of the optimal pupil apodizers for this application (generalized prolate spheroidal functions). The case of a circular aperture telescope with a central obstruction is considered in detail, and we discuss the effects of primary mirror segmentation and secondary mirror support structures as a function of the occulting mask size. In most cases where inner working distance is critical, e.g., for exoplanet detection, these additional features do not alter the solutions derived with just the central obstruction, although certain applications such as quasar-host galaxy coronagraphic observations could benefit from designs that explicitly accomodate ELT spider geometries. We illustrate coronagraphic designs for several ELT geometries including ESO/OWL, the Thirty Mirror Telescope, the Giant Magellan Telescope, and describe numerical methods for generating these designs.

High-contrast imager for Complex Aperture Telescopes (HiCAT): APLC/shaped-pupil hybrid coronagraph designs

NASA Astrophysics Data System (ADS)

N'Diaye, Mamadou; Choquet, Elodie; Carlotti, Alexis; Pueyo, Laurent; Egron, Sylvain; Leboulleux, Lucie; Levecq, Olivier; Perrin, Marshall D.; Wallace, J. Kent; Long, Chris; Lajoie, Rachel; Lajoie, Charles-Philippe; Eldorado Riggs, A. J.; Zimmerman, Neil T.; Groff, Tyler Dean; Kasdin, N. Jeremy; Vanderbei, Robert J.; Mawet, Dimitri; Macintosh, Bruce; Shaklan, Stuart; Soummer, Remi

2015-01-01

HiCAT is a high-contrast imaging testbed designed to provide complete solutions in wavefront sensing, control and starlight suppression with complex aperture telescopes. Primary mirror segmentation, central obstruction and spiders in the pupil of an on-axis telescope introduces additional diffraction features in the point spread function, which make high-contrast imaging very challenging. The testbed alignment was completed in the summer of 2014, exceeding specifications with a total wavefront error of 12nm rms with a 18mm pupil. Two deformable mirrors are to be installed for wavefront control in the fall of 2014. In this communication, we report on the first testbed results using a classical Lyot coronagraph. We have developed novel coronagraph designs combining an Apodized Pupil Lyot Coronagraph (APLC) with shaped-pupil type optimizations. We present the results of these new APLC-type solutions with two-dimensional shaped-pupil apodizers for the HiCAT geometry. These solutions render the system quasi-insensitive to jitter and low-order aberrations, while improving the performance in terms of inner working angle, bandpass and contrast over a classical APLC.

Qibla Finder and Sholat Times Based on Digital Compass, GPS and Microprocessor

NASA Astrophysics Data System (ADS)

Sanjaya, W. S. M.; Anggraeni, D.; Nurrahman, F. I.; Kresnadjaja, W. G.; Dewi, I. P.; Mira; Aliah, H.; Marlina, L.

2018-01-01

To performing Sholat, Muslims around the world are required to pay attention to the requirements of Sholat, such as; determining the direction of the Qibla (Kaaba) and the time of Sholat. In this research will be made a real time Qibla Finder and Sholat Times named Q-Bot Ver3 to help Muslims find a Qibla direction and Time of Sholat anywhere. This Qibla Finder and Sholat Times are developed with robotic technology based on Digital Compass, GPS and Microcontroller. To determine the Qibla direction and Sholat times, latitude and longitude data form GPS module processed used spherical triangle trigonometry method, while the compass module used to show the Qibla direction. Moreover, this system has a buzzer which can sound if the device facing to the Qibla. This system is reliable and accurate in determining the Qibla Finder and Sholat Times. Thus, the advantage of the system is can correct the Qibla of Masjid and can help blind people to facing Qibla around the world.

CellFinder: a cell data repository

PubMed Central

Stachelscheid, Harald; Seltmann, Stefanie; Lekschas, Fritz; Fontaine, Jean-Fred; Mah, Nancy; Neves, Mariana; Andrade-Navarro, Miguel A.; Leser, Ulf; Kurtz, Andreas

2014-01-01

CellFinder (http://www.cellfinder.org) is a comprehensive one-stop resource for molecular data characterizing mammalian cells in different tissues and in different development stages. It is built from carefully selected data sets stemming from other curated databases and the biomedical literature. To date, CellFinder describes 3394 cell types and 50 951 cell lines. The database currently contains 3055 microscopic and anatomical images, 205 whole-genome expression profiles of 194 cell/tissue types from RNA-seq and microarrays and 553 905 protein expressions for 535 cells/tissues. Text mining of a corpus of >2000 publications followed by manual curation confirmed expression information on ∼900 proteins and genes. CellFinder’s data model is capable to seamlessly represent entities from single cells to the organ level, to incorporate mappings between homologous entities in different species and to describe processes of cell development and differentiation. Its ontological backbone currently consists of 204 741 ontology terms incorporated from 10 different ontologies unified under the novel CELDA ontology. CellFinder’s web portal allows searching, browsing and comparing the stored data, interactive construction of developmental trees and navigating the partonomic hierarchy of cells and tissues through a unique body browser designed for life scientists and clinicians. PMID:24304896

Artemis: A Stratospheric Planet Finder

NASA Technical Reports Server (NTRS)

Ford, H. C.; Petro, L. D.; Burrows, C.; Ftaclas, C.; Roggemann, M. C.; Trauger, J. T.

2003-01-01

The near-space environment of the stratosphere is far superior to terrestrial sites for optical and infrared observations. New balloon technologies will enable flights and safe recovery of 2-ton payloads at altitudes of 35 km for 100 days and longer. The combination of long flights and superb observing conditions make it possible to undertake science programs that otherwise could only be done from orbit. We propose to fly an "Ultra-Hubble" Stratospheric Telescope (UHST) equipped with a coronagraphic camera and active optics at 35 km to search for planets around 200 of the nearest stars. This ULDB mission will establish the frequency of solar-type planetary systems, and provide targets to search for earth-like planets.

Preliminary optical design of the coronagraph for the ASPIICS formation flying mission

NASA Astrophysics Data System (ADS)

Vivès, S.; Lamy, P.; Saisse, M.; Boit, J.-L.; Koutchmy, S.

2017-11-01

Formation flyers open new perspectives and allow to conceive giant, externally-occulted coronagraphs using a two-component space system with the external occulter on one spacecraft and the optical instrument on the other spacecraft at approximately 100-150 m from the first one. ASPIICS (Association de Satellites Pour l'Imagerie et l'Interfromtrie de la Couronne Solaire) is a mission proposed to ESA in the framework of the PROBA-3 program of formation flying which is presently in phase A to exploit this technique for coronal observations. ASPIICS is composed of a single coronagraph which performs high spatial resolution imaging of the corona as well as 2-dimensional spectroscopy of several emission lines from the coronal base out to 3 R. The selected lines allow to address different coronal regions: the forbidden line of Fe XIV at 530.285 nm (coronal matter), Fe IX/X at 637.4 nm (coronal holes), HeI at 587.6 nm (cold matter). An additional broad spectral channel will image the white light corona so as to derive electron densities. The classical design of an externally occulted coronagraph is adapted to the detection of the very inner corona as close as 1.01 R and the addition of a Fabry-Perot interferometer using a so-called "etalon". This paper is dedicated to the description of the optical design and its critical components: the entrance optics and the FabryPerot interferometer.

DecoyFinder: an easy-to-use python GUI application for building target-specific decoy sets.

PubMed

Cereto-Massagué, Adrià; Guasch, Laura; Valls, Cristina; Mulero, Miquel; Pujadas, Gerard; Garcia-Vallvé, Santiago

2012-06-15

Decoys are molecules that are presumed to be inactive against a target (i.e. will not likely bind to the target) and are used to validate the performance of molecular docking or a virtual screening workflow. The Directory of Useful Decoys database (http://dud.docking.org/) provides a free directory of decoys for use in virtual screening, though it only contains a limited set of decoys for 40 targets.To overcome this limitation, we have developed an application called DecoyFinder that selects, for a given collection of active ligands of a target, a set of decoys from a database of compounds. Decoys are selected if they are similar to active ligands according to five physical descriptors (molecular weight, number of rotational bonds, total hydrogen bond donors, total hydrogen bond acceptors and the octanol-water partition coefficient) without being chemically similar to any of the active ligands used as an input (according to the Tanimoto coefficient between MACCS fingerprints). To the best of our knowledge, DecoyFinder is the first application designed to build target-specific decoy sets. A complete description of the software is included on the application home page. A validation of DecoyFinder on 10 DUD targets is provided as Supplementary Table S1. DecoyFinder is freely available at http://URVnutrigenomica-CTNS.github.com/DecoyFinder.

Factors important for women who breastfeed in public: a content analysis of review data from FeedFinder

PubMed Central

Simpson, Emma; Garbett, Andrew; Comber, Rob; Balaam, Madeline

2016-01-01

Objective To examine how the breastfeeding experience is represented by users of FeedFinder (a mobile phone application for finding, reviewing and sharing places to breastfeed in public). Design Content analysis using FeedFinder database. Setting FeedFinder, UK, September 2013–June 2015. Methods Reviews obtained through FeedFinder over a period of 21 months were systematically coded using a conventional content analysis approach, average review scores were calculated for the rating criteria in FeedFinder (comfort, hygiene, privacy, baby facilities) and review texts were analysed for sentiment. We used data from Foursquare to describe the type of venues visited and cross-referenced the location of venues with the Indices of Multiple Deprivation. Results A total of 1757 reviews were analysed. Of all the reviews obtained, 80% of those were classified as positive, 15.4% were classified as neutral and 4.3% were classified as negative. Important factors that were discussed by women include facilities, service, level of privacy available and qualities of a venue. The majority of venues were classified as cafes (26.4%), shops (24.4%) and pubs (13.4%). Data on IMD were available for 1229 venues mapped within FeedFinder, 23% were located within the most deprived quintile and 16% were located in the least deprived quintile. Conclusions Women create content that is positive and informative when describing their breastfeeding experience in public. Public health bodies and business owners have the potential to use the data from FeedFinder to impact on service provision. Further work is needed to explore the demographic differences that may help to tailor public health interventions aimed at increasing breastfeeding rates in the UK. PMID:27797996

Development and implementation of a 'Mental Health Finder' software tool within an electronic medical record system.

PubMed

Swan, D; Hannigan, A; Higgins, S; McDonnell, R; Meagher, D; Cullen, W

2017-02-01

In Ireland, as in many other healthcare systems, mental health service provision is being reconfigured with a move toward more care in the community, and particularly primary care. Recording and surveillance systems for mental health information and activities in primary care are needed for service planning and quality improvement. We describe the development and initial implementation of a software tool ('mental health finder') within a widely used primary care electronic medical record system (EMR) in Ireland to enable large-scale data collection on the epidemiology and management of mental health and substance use problems among patients attending general practice. In collaboration with the Irish Primary Care Research Network (IPCRN), we developed the 'Mental Health Finder' as a software plug-in to a commonly used primary care EMR system to facilitate data collection on mental health diagnoses and pharmacological treatments among patients. The finder searches for and identifies patients based on diagnostic coding and/or prescribed medicines. It was initially implemented among a convenience sample of six GP practices. Prevalence of mental health and substance use problems across the six practices, as identified by the finder, was 9.4% (range 6.9-12.7%). 61.9% of identified patients were female; 25.8% were private patients. One-third (33.4%) of identified patients were prescribed more than one class of psychotropic medication. Of the patients identified by the finder, 89.9% were identifiable via prescribing data, 23.7% via diagnostic coding. The finder is a feasible and promising methodology for large-scale data collection on mental health problems in primary care.

The optimization of the inverted occulter of the solar orbiter/METIS coronagraph/spectrometer

NASA Astrophysics Data System (ADS)

Landini, F.; Vives, S.; Romoli, M.; Guillon, C.; Pancrazzi, M.; Escolle, C.; Focardi, M.; Fineschi, S.; Antonucci, E.; Nicolini, G.; Naletto, G.; Nicolosi, P.; Spadaro, D.

2017-11-01

The coronagraph/spectrometer METIS (Multi Element Telescope for Imaging and Spectroscopy), selected to fly aboard the Solar Orbiter ESA/NASA mission, is conceived to perform imaging (in visible, UV and EUV) and spectroscopy (in EUV) of the solar corona. It is an integrated instrument suite located on a single optical bench and sharing a unique aperture on the satellite heat shield. As every coronagraph, METIS is highly demanding in terms of stray light suppression. In order to meet the strict thermal requirements of Solar Orbiter, METIS optical design has been optimized by moving the entrance pupil at the level of the external occulter on the S/C thermal shield, thus reducing the size of the external aperture. The scheme is based on an inverted external-occulter (IEO). The IEO consists of a circular aperture on the Solar Orbiter thermal shield. A spherical mirror rejects back the disk-light through the IEO. The experience built on all the previous space coronagraphs forces designers to dedicate a particular attention to the occulter optimization. Two breadboards were manufactured to perform occulter optimization measurements: BOA (Breadboard of the Occulting Assembly) and ANACONDA (AN Alternative COnfiguration for the Occulting Native Design Assembly). A preliminary measurement campaign has been carried on at the Laboratoire d'Astrophysique de Marseille. In this paper we describe BOA and ANACONDA designs, the laboratory set-up and the preliminary results.

The Subaru Coronagraphic Extreme AO Project

NASA Astrophysics Data System (ADS)

Martinache, Frantz; Guyon, O.; Lozi, J.; Tamura, M.; Hodapp, K.; Suzuki, R.; Hayano, Y.; McElwain, M. W.

2009-01-01

While the existence of large numbers of extrasolar planets around solar type stars has been unambiguously demonstrated by radial velocity, transit and microlensing surveys, attempts at direct imaging with AO-equipped large telescopes remain unsuccessful. Because they supposedly offer more favorable contrast ratios, young systems consitute prime targets for imaging. Such observations will provide key insights on the formation and early evolution of planets and disks. Current surveys are limited by modest AO performance which limits inner working angle to 0.2", and only reach maximum sensitivity outside 1". This translates into orbital distances greater than 10 AU even on most nearby systems, while only 5 % of the known exoplanets have a semimajor axis greater than 10 AU. This calls for a major change of approach in the techniques used for direct imaging of the direct vicinity of stars. A sensible way to do the job is to combine coronagraphy and Extreme AO. Only accurate and fast control of the wavefront will permit the detection of high contrast planetary companions within 10 AU. The SCExAO system, currently under assembly, is an upgrade of the HiCIAO coronagraphic differential imaging camera, mounted behind the 188-actuator curvature AO system on Subaru Telescope. This platform includes a 1000-actuator MEMS deformable mirror for high accuracy wavefront correction and a PIAA coronagraph which delivers high contrast at 0.05" from the star (5 AU at 100 pc). Key technologies have been validated in the laboratory: high performance wavefront sensing schemes, spider vanes and central obstruction removal, and lossless beam apodization. The project is designed to be highly flexible to continuously integrate new technologies with high scientific payoff. Planned upgrades include an integral field unit for spectral characterization of planets/disks and a non-redundant aperture mask to push the performance of the system toward separations less than lambda/D.

High Contrast Tests with a PIAA Coronagraph in Air

NASA Astrophysics Data System (ADS)

Totems, J.; Guyon, O.

2007-06-01

The Phase-Induced Amplitude Apodization Coronagraph, which allows high contrast imaging with a small inner working angle, is extremely attractive for future space and ground-based high contrast missions. An experiment is currently under development in our lab at the Subaru Telescope in Hilo, Hawaii, to qualify its capabilities. We will describe the optical configuration adopted and our efforts to stabilize the wavefront in order to improve its performance.

Sensitivity of the terrestrial planet finder

NASA Technical Reports Server (NTRS)

Beichman, Charles

1998-01-01

A key long-term goal of NASA's Origins program is the detection and characterization of habitable planets orbiting stars within the solar neighborhood. A cold, space-borne interferometer operating in the mid-infrared with a approx. 75 m baseline can null the light of a parent star and detect the million-times fainter radiation from an Earth-like planet located in the "habitable zone" around stars as far as 15 pc away. Such an interferometer, designated the Terrestrial Planet Finder (TPF) by NASA, could even detect atmospheric signatures of species such as CO2, O3, and H2O indicative of either the possibility or presence of primitive life. This talk highlights some of the sensitivity issues affecting the detectability of terrestrial planets. Sensitivity calculations show that a system consisting of 2 m apertures operating at 5 AU or 4 m apertures operating at 1 AU can detect terrestrial planets in reasonable integration times for levels of exo-zodiacal emission up to 10 times that seen in our solar system (hereafter denoted as 10xSS). Additionally, simulations show that confusion noise from structures in the exo-zodiacal cloud should not impede planet detection until the exo-zodiacal emission reaches the 10xSS level.

Factors important for women who breastfeed in public: a content analysis of review data from FeedFinder.

PubMed

Simpson, Emma; Garbett, Andrew; Comber, Rob; Balaam, Madeline

2016-10-24

To examine how the breastfeeding experience is represented by users of FeedFinder (a mobile phone application for finding, reviewing and sharing places to breastfeed in public). Content analysis using FeedFinder database. FeedFinder, UK, September 2013-June 2015. Reviews obtained through FeedFinder over a period of 21 months were systematically coded using a conventional content analysis approach, average review scores were calculated for the rating criteria in FeedFinder (comfort, hygiene, privacy, baby facilities) and review texts were analysed for sentiment. We used data from Foursquare to describe the type of venues visited and cross-referenced the location of venues with the Indices of Multiple Deprivation. A total of 1757 reviews were analysed. Of all the reviews obtained, 80% of those were classified as positive, 15.4% were classified as neutral and 4.3% were classified as negative. Important factors that were discussed by women include facilities, service, level of privacy available and qualities of a venue. The majority of venues were classified as cafes (26.4%), shops (24.4%) and pubs (13.4%). Data on IMD were available for 1229 venues mapped within FeedFinder, 23% were located within the most deprived quintile and 16% were located in the least deprived quintile. Women create content that is positive and informative when describing their breastfeeding experience in public. Public health bodies and business owners have the potential to use the data from FeedFinder to impact on service provision. Further work is needed to explore the demographic differences that may help to tailor public health interventions aimed at increasing breastfeeding rates in the UK. Published by the BMJ Publishing Group Limited. For permission to use (where not already granted under a licence) please go to http://www.bmj.com/company/products-services/rights-and-licensing/.

GLS-Finder: A Platform for Fast Profiling of Glucosinolates in Brassica Vegetables.

PubMed

Sun, Jianghao; Zhang, Mengliang; Chen, Pei

2016-06-01

Mass spectrometry combined with related tandem techniques has become the most popular method for plant secondary metabolite characterization. We introduce a new strategy based on in-database searching, mass fragmentation behavior study, formula predicting for fast profiling of glucosinolates, a class of important compounds in brassica vegetables. A MATLAB script-based expert system computer program, "GLS-Finder", was developed. It is capable of qualitative and semi-quantitative analyses of glucosinolates in samples using data generated by ultrahigh-performance liquid chromatography-high-resolution accurate mass with multi-stage mass fragmentation (UHPLC-HRAM/MS(n)). A suite of bioinformatic tools was integrated into the "GLS-Finder" to perform raw data deconvolution, peak alignment, glucosinolate putative assignments, semi-quantitation, and unsupervised principal component analysis (PCA). GLS-Finder was successfully applied to identify intact glucosinolates in 49 commonly consumed Brassica vegetable samples in the United States. It is believed that this work introduces a new way of fast data processing and interpretation for qualitative and quantitative analyses of glucosinolates, where great efficacy was improved in comparison to identification manually.

FISH Finder: a high-throughput tool for analyzing FISH images

PubMed Central

Shirley, James W.; Ty, Sereyvathana; Takebayashi, Shin-ichiro; Liu, Xiuwen; Gilbert, David M.

2011-01-01

Motivation: Fluorescence in situ hybridization (FISH) is used to study the organization and the positioning of specific DNA sequences within the cell nucleus. Analyzing the data from FISH images is a tedious process that invokes an element of subjectivity. Automated FISH image analysis offers savings in time as well as gaining the benefit of objective data analysis. While several FISH image analysis software tools have been developed, they often use a threshold-based segmentation algorithm for nucleus segmentation. As fluorescence signal intensities can vary significantly from experiment to experiment, from cell to cell, and within a cell, threshold-based segmentation is inflexible and often insufficient for automatic image analysis, leading to additional manual segmentation and potential subjective bias. To overcome these problems, we developed a graphical software tool called FISH Finder to automatically analyze FISH images that vary significantly. By posing the nucleus segmentation as a classification problem, compound Bayesian classifier is employed so that contextual information is utilized, resulting in reliable classification and boundary extraction. This makes it possible to analyze FISH images efficiently and objectively without adjustment of input parameters. Additionally, FISH Finder was designed to analyze the distances between differentially stained FISH probes. Availability: FISH Finder is a standalone MATLAB application and platform independent software. The program is freely available from: http://code.google.com/p/fishfinder/downloads/list Contact: gilbert@bio.fsu.edu PMID:21310746

NASA's terrestial planet finder: the search for (habitable) planets

NASA Technical Reports Server (NTRS)

Beichman, C. A.

2000-01-01

One of the primary goals of NASA's Origins program is the search for hospitable planets. I will describe how the Terrestrial Planet Finder (TPF) will revolutionize our understanding of the origin and evolution of planetary systems, and possibly even find signs of life beyond Earth.

3. VIEW NORTHWEST, height finder radar towers, and radar tower ...

Library of Congress Historic Buildings Survey, Historic Engineering Record, Historic Landscapes Survey

3. VIEW NORTHWEST, height finder radar towers, and radar tower (unknown function) - Fort Custer Military Reservation, P-67 Radar Station, .25 mile north of Dickman Road, east of Clark Road, Battle Creek, Calhoun County, MI

GLS-Finder: An Automated Data-Mining System for Fast Profiling Glucosinolates and its Application in Brassica Vegetables

USDA-ARS?s Scientific Manuscript database

A rapid computer-aided program for profiling glucosinolates, “GLS-Finder", was developed. GLS-Finder is a Matlab script based expert system that is capable for qualitative and semi-quantitative analysis of glucosinolates in samples using data generated by ultra-high performance liquid chromatograph...

Post-Coronagraph Wavefront Sensor for Gemini Planet Imager

NASA Technical Reports Server (NTRS)

Wallace, J. Kent; Burruss, Rick; Pueyo, Laurent; Soummer, Remi; Shelton, Chris; Bartos, Randall; Fregoso, Felipe; Nemati, Bijan; Best, Paul; Angione, John

2009-01-01

The calibration wavefront system for the Gemini Planet Imager (GPI) will measure the complex wavefront at the apodized pupil and provide slow phase errors to the AO system to mitigate against image plane speckles that would cause a loss in contrast. This talk describes both the low-order and high-order sensors in the calibration wavefront sensor and how the information is combined to form the wavefront estimate before the coronagraph. We will show laboratory results from our calibration testbed that demonstrate the subsystem performance at levels commensurate with those required on the final instrument.

NASA's Terrestrial Planet Finder: The Search for (Habitable) Planets

NASA Technical Reports Server (NTRS)

Beichman, C.

1999-01-01

One of the primary goals of NASA's Origins program is the search for habitable planets. I will describe how the Terrestrial Planet Finder (TPF) will revolutionize our understanding of the origin and evolution of planetary systems, and possibly even find signs of life beyond the Earth.

Test of the principle of operation of a wideband magnetic direction finder for lightning return strokes

NASA Technical Reports Server (NTRS)

Herrman, B. D.; Uman, M. A.; Brantley, R. D.; Krider, E. P.

1976-01-01

The principle of operation of a wideband crossed-loop magnetic-field direction finder is studied by comparing the bearing determined from the NS and EW magnetic fields at various times up to 155 microsec after return stroke initiation with the TV-determined lightning channel base direction. For 40 lightning strokes in the 3 to 12 km range, the difference between the bearings found from magnetic fields sampled at times between 1 and 10 microsec and the TV channel-base data has a standard deviation of 3-4 deg. Included in this standard deviation is a 2-3 deg measurement error. For fields sampled at progressively later times, both the mean and the standard deviation of the difference between the direction-finder bearing and the TV bearing increase. Near 150 microsec, means are about 35 deg and standard deviations about 60 deg. The physical reasons for the late-time inaccuracies in the wideband direction finder and the occurrence of these effects in narrow-band VLF direction finders are considered.

HCIT Contrast Performance Sensitivity Studies: Simulation Versus Experiment

NASA Technical Reports Server (NTRS)

Sidick, Erkin; Shaklan, Stuart; Krist, John; Cady, Eric J.; Kern, Brian; Balasubramanian, Kunjithapatham

2013-01-01

Using NASA's High Contrast Imaging Testbed (HCIT) at the Jet Propulsion Laboratory, we have experimentally investigated the sensitivity of dark hole contrast in a Lyot coronagraph for the following factors: 1) Lateral and longitudinal translation of an occulting mask; 2) An opaque spot on the occulting mask; 3) Sizes of the controlled dark hole area. Also, we compared the measured results with simulations obtained using both MACOS (Modeling and Analysis for Controlled Optical Systems) and PROPER optical analysis programs with full three-dimensional near-field diffraction analysis to model HCIT's optical train and coronagraph.

Vortex coronagraphs for the Habitable Exoplanet Imaging Mission concept: theoretical performance and telescope requirements

NASA Astrophysics Data System (ADS)

Ruane, Garreth; Mawet, Dimitri; Mennesson, Bertrand; Jewell, Jeffrey; Shaklan, Stuart

2018-01-01

The Habitable Exoplanet Imaging Mission concept requires an optical coronagraph that provides deep starlight suppression over a broad spectral bandwidth, high throughput for point sources at small angular separation, and insensitivity to temporally varying, low-order aberrations. Vortex coronagraphs are a promising solution that performs optimally on off-axis, monolithic telescopes and may also be designed for segmented telescopes with minor losses in performance. We describe the key advantages of vortex coronagraphs on off-axis telescopes such as (1) unwanted diffraction due to aberrations is passively rejected in several low-order Zernike modes relaxing the wavefront stability requirements for imaging Earth-like planets from <10 to >100 pm rms, (2) stars with angular diameters >0.1 λ / D may be sufficiently suppressed, (3) the absolute planet throughput is >10 % , even for unfavorable telescope architectures, and (4) broadband solutions (Δλ / λ > 0.1) are readily available for both monolithic and segmented apertures. The latter make use of grayscale apodizers in an upstream pupil plane to provide suppression of diffracted light from amplitude discontinuities in the telescope pupil without inducing additional stroke on the deformable mirrors. We set wavefront stability requirements on the telescope, based on a stellar irradiance threshold set at an angular separation of 3 ± 0.5λ / D from the star, and discuss how some requirements may be relaxed by trading robustness to aberrations for planet throughput.

1. VIEW NORTHWEST, operations building, height finder radar tower, and ...

Library of Congress Historic Buildings Survey, Historic Engineering Record, Historic Landscapes Survey

1. VIEW NORTHWEST, operations building, height finder radar tower, and radar tower (unknown function) - Fort Custer Military Reservation, P-67 Radar Station, .25 mile north of Dickman Road, east of Clark Road, Battle Creek, Calhoun County, MI

High Contrast Imaging with NICMOS - I: Teaching an Old Dog New Tricks with Coronagraphic Polarimetry

NASA Astrophysics Data System (ADS)

Schneider, G.; Hines, D. C.

2007-06-01

HST's Near Infrared Camera and Multi-Object Spectrometer (NICMOS), with its highly stable point spread function, very high imaging Strehl ratio (panchromatically > 98% over its entire 0.8 - 2.4 micron wavelength regime) and coronagraphic imaging capability, celebrated its tenth anniversary in space earlier this year. These combined instrumental attributes uniquely contribute to its capability as a high-contrast imager as demonstrated by its continuing production of new examples of spatially resolved scattered-light imagery of both optically thick and thin circumstellar disks and sub-stellar companions to young stars and brown dwarfs well into the (several) Jovian mass range. We review these capabilities, illustrating with observationally based results, including examples obtained since HST's entry into two gyro guiding mode in mid 2005. The advent of a recently introduced, and now commissioned and calibrated, coronagraphic polarimetry mode has enabled very-high contrast 2 micron imaging polarimetry with 0.2 spatial resolution. Such imagery provides important constraints in the interpretation of disk-scattered starlight in assessing circumstellar disk geometries and the physical properties of their constituent grains. We demonstrate this new capability with observational results from two currently-executing HST programs obtaining 2 micron coronagraphic polarimetric images of circumstellar T-Tauri and debris disks.

Intercomparison of the LASCO-C2, SECCHI-COR1, SECCHI-COR2, and Mk4 Coronagraphs

NASA Technical Reports Server (NTRS)

Frazin, Richard A.; Vasquez, Alberto M.; Thompson, William T.; Hewett, Russell J.; Lamy, Philippe; Llebaria, Antoine; Vourlidas, Angelos; Burkepile, Joan

2012-01-01

In order to assess the reliability and consistency of white-light coronagraph measurements, we report on quantitative comparisons between polarized brightness [pB] and total brightness [B] images taken by the following white-light coronagraphs: LASCO-C2 on SOHO, SECCHI-COR1 and -COR2 on STEREO, and the ground-based MLSO-Mk4. The data for this comparison were taken on 16 April 2007, when both STEREO spacecraft were within 3.1 deg. of Earth’s heliographic longitude, affording essentially the same view of the Sun for all of the instruments. Due to the difficulties of estimating stray-light backgrounds in COR1 and COR2, only Mk4 and C2 produce reliable coronal-hole values (but not at overlapping heights), and these cannot be validated without rocket flights or ground-based eclipse measurements. Generally, the agreement between all of the instruments’ pB values is within the uncertainties in bright streamer structures, implying that measurements of bright CMEs also should be trustworthy. Dominant sources of uncertainty and stray light are discussed, as is the design of future coronagraphs from the perspective of the experiences with these instruments.

Extreme coronagraphy with an adaptive hologram. Simulations of exo-planet imaging

NASA Astrophysics Data System (ADS)

Ricci, D.; Le Coroller, H.; Labeyrie, A.

2009-08-01

Aims: We present a solution to improve the performance of coronagraphs for the detection of exo-planets. Methods: We simulate numerically several kinds of coronagraphic systems, with the aim of evaluating the gain obtained with an adaptive hologram. Results: The detection limit in flux ratio between a star and a planet (F_s/F_p) observed with an apodized Lyot coronagraph characterized by wavefront bumpiness imperfections of λ/20 (resp. λ/100) turns out to be increased by a factor of 103.4 (resp. 105.1) when equipped with a hologram. Conclusions: This technique could provide direct imaging of an exo-Earth at a distance of 11 parsec with a 6.5 m space telescope such as the JWST with the optical quality of the HST.

PubFinder: a tool for improving retrieval rate of relevant PubMed abstracts.

PubMed

Goetz, Thomas; von der Lieth, Claus-Wilhelm

2005-07-01

Since it is becoming increasingly laborious to manually extract useful information embedded in the ever-growing volumes of literature, automated intelligent text analysis tools are becoming more and more essential to assist in this task. PubFinder (www.glycosciences.de/tools/PubFinder) is a publicly available web tool designed to improve the retrieval rate of scientific abstracts relevant for a specific scientific topic. Only the selection of a representative set of abstracts is required, which are central for a scientific topic. No special knowledge concerning the query-syntax is necessary. Based on the selected abstracts, a list of discriminating words is automatically calculated, which is subsequently used for scoring all defined PubMed abstracts for their probability of belonging to the defined scientific topic. This results in a hit-list of references in the descending order of their likelihood score. The algorithms and procedures implemented in PubFinder facilitate the perpetual task for every scientist of staying up-to-date with current publications dealing with a specific subject in biomedicine.

Laser scanning methods and a phase comparison, modulated laser range finder for terrain sensing on a Mars roving vehicle. M.S. Thesis

NASA Technical Reports Server (NTRS)

Herb, G. T.

1973-01-01

Two areas of a laser range finder for a Mars roving vehicle are investigated: (1) laser scanning systems, and (2) range finder methods and implementation. Several ways of rapidly scanning a laser are studied. Two digital deflectors and a matrix of laser diodes, are found to be acceptable. A complete range finder scanning system of high accuracy is proposed. The problem of incident laser spot distortion on the terrain is discussed. The instrumentation for a phase comparison, modulated laser range finder is developed and sections of it are tested.

The RD-Connect Registry & Biobank Finder: a tool for sharing aggregated data and metadata among rare disease researchers.

PubMed

Gainotti, Sabina; Torreri, Paola; Wang, Chiuhui Mary; Reihs, Robert; Mueller, Heimo; Heslop, Emma; Roos, Marco; Badowska, Dorota Mazena; de Paulis, Federico; Kodra, Yllka; Carta, Claudio; Martìn, Estrella Lopez; Miller, Vanessa Rangel; Filocamo, Mirella; Mora, Marina; Thompson, Mark; Rubinstein, Yaffa; Posada de la Paz, Manuel; Monaco, Lucia; Lochmüller, Hanns; Taruscio, Domenica

2018-05-01

In rare disease (RD) research, there is a huge need to systematically collect biomaterials, phenotypic, and genomic data in a standardized way and to make them findable, accessible, interoperable and reusable (FAIR). RD-Connect is a 6 years global infrastructure project initiated in November 2012 that links genomic data with patient registries, biobanks, and clinical bioinformatics tools to create a central research resource for RDs. Here, we present RD-Connect Registry & Biobank Finder, a tool that helps RD researchers to find RD biobanks and registries and provide information on the availability and accessibility of content in each database. The finder concentrates information that is currently sparse on different repositories (inventories, websites, scientific journals, technical reports, etc.), including aggregated data and metadata from participating databases. Aggregated data provided by the finder, if appropriately checked, can be used by researchers who are trying to estimate the prevalence of a RD, to organize a clinical trial on a RD, or to estimate the volume of patients seen by different clinical centers. The finder is also a portal to other RD-Connect tools, providing a link to the RD-Connect Sample Catalogue, a large inventory of RD biological samples available in participating biobanks for RD research. There are several kinds of users and potential uses for the RD-Connect Registry & Biobank Finder, including researchers collaborating with academia and the industry, dealing with the questions of basic, translational, and/or clinical research. As of November 2017, the finder is populated with aggregated data for 222 registries and 21 biobanks.

Vector wavefront propagation modeling for the TPF coronagraph

NASA Astrophysics Data System (ADS)

Lieber, Michael D.; Neureuther, Andrew R.; Ceperley, Dan; Kasdin, N. Jeremy; Ter-Gabrielyan, Nikolay

2004-10-01

The TPF mission to search for exo-solar planets is extremely challenging both technically and from a performance modeling perspective. For the visible light coronagraph approach, the requirements for 1e10 rejection of star light to planet signal has not yet been achieved in laboratory testing and full-scale testing on the ground has many more obstacles and may not be possible. Therefore, end-to-end performance modeling will be relied upon to fully predict performance. One of the key technologies developed for achieving the rejection ratios uses shaped pupil masks to selectively cancel starlight in planet search regions by taking advantage of diffraction. Modeling results published to date have been based upon scalar wavefront propagation theory to compute the residual star and planet images. This ignores the 3D structure of the mask and the interaction of light with matter. In this paper we discuss previous work with a system model of the TPF coronagraph and propose an approach for coupling in a vector propagation model using the Finite Difference Time Domain (FDTD) method. This method, implemented in a software package called TEMPEST, allows us to propagate wavefronts through a mask structure to an integrated system model to explore the vector propagation aspects of the problem. We can then do rigorous mask scatter modeling to understand the effects of real physical mask structures on the magnitude, phase, polarization, and wavelength dependence of the transmitted light near edges. Shaped mask technology is reviewed, and computational aspects and interface issues to a TPF integrated system model are also discussed.

Technology Advancement of the Visible Nulling Coronagraph

NASA Technical Reports Server (NTRS)

Lyon, Richard G.; Clampin, Mark; Petrone, Peter; Thompson, Patrick; Bolcar, Matt; Madison, Timothy; Woodruff, Robert; Noecker, Charley; Kendrick, Steve

2010-01-01

The critical high contrast imaging technology for the Extrasolar Planetary Imaging Coronagraph (EPIC) mission concept is the visible nulling coronagraph (VNC). EPIC would be capable of imaging jovian planets, dust/debris disks, and potentially super-Earths and contribute to answering how bright the debris disks are for candidate stars. The contrast requirement for EPIC is 10(exp 9) contrast at 125 milli-arseconds inner working angle. To advance the VNC technology NASA/Goddard Space Flight Center, in collaboration with Lockheed-Martin, previously developed a vacuum VNC testbed, and achieved narrowband and broadband suppression of the core of the Airy disk. Recently our group was awarded a NASA Technology Development for Exoplanet Missions to achieve two milestones: (i) 10(exp 8) contrast in narrowband light, and, (ii) 10(ecp 9) contrast in broader band light; one milestone per year, and both at 2 Lambda/D inner working angle. These will be achieved with our 2nd generation testbed known as the visible nulling testbed (VNT). It contains a MEMS based hex-packed segmented deformable mirror known as the multiple mirror array (MMA) and coherent fiber bundle, i.e. a spatial filter array (SFA). The MMA is in one interferometric arm and works to set the wavefront differences between the arms to zero. Each of the MMA segments is optically mapped to a single mode fiber of the SFA, and the SFA passively cleans the sub-aperture wavefront error leaving only piston, tip and tilt error to be controlled. The piston degree of freedom on each segment is used to correct the wavefront errors, while the tip/tilt is used to simultaneously correct the amplitude errors. Thus the VNT controls both amplitude and wavefront errors with a single MMA in closed-loop in a vacuum tank at approx.20 Hz. Herein we will discuss our ongoing progress with the VNT.

Recognition of three dimensional obstacles by an edge detection scheme. [for Mars roving vehicle using laser range finder

NASA Technical Reports Server (NTRS)

Reed, M. A.

1974-01-01

The need for an obstacle detection system on the Mars roving vehicle was assumed, and a practical scheme was investigated and simulated. The principal sensing device on this vehicle was taken to be a laser range finder. Both existing and original algorithms, ending with thresholding operations, were used to obtain the outlines of obstacles from the raw data of this laser scan. A theoretical analysis was carried out to show how proper value of threshold may be chosen. Computer simulations considered various mid-range boulders, for which the scheme was quite successful. The extension to other types of obstacles, such as craters, was considered. The special problems of bottom edge detection and scanning procedure are discussed.

Adaptive Nulling for the Terrestrial Planet Finder Interferometer

NASA Technical Reports Server (NTRS)

Peters, Robert D.; Lay, Oliver P.; Jeganathan, Muthu; Hirai, Akiko

2006-01-01

A description of adaptive nulling for Terrestrial Planet Finder Interferometer (TPFI) is presented. The topics include: 1) Nulling in TPF-I; 2) Why Do Adaptive Nulling; 3) Parallel High-Order Compensator Design; 4) Phase and Amplitude Control; 5) Development Activates; 6) Requirements; 7) Simplified Experimental Setup; 8) Intensity Correction; and 9) Intensity Dispersion Stability. A short summary is also given on adaptive nulling for the TPFI.

Coronagraphic Observations of Lunar Sodium

NASA Technical Reports Server (NTRS)

Hunten, D. M.; Sprague, A. L.

1997-01-01

The core of the proposed work was to observe the lunar sodium atmosphere with our classical Lyot coronagraph and specially-built grating spectrograph on Mount Lemmon, a 9400-foot peak about an hour's drive from Tucson. It is optimized for low scattered light and for observing from the Moon's limb to an altitude of approx. 1 lunar radius. The grating has 600 lines/mm and a blaze angle of 49 deg, and is used with a somewhat wide slit at a resolving power of about 5000. It is called DARRK for the initials of the people who designed it. The rejection of stray light from the Moon's disk is spectacularly good: when the sky is clear this light is absent right up to a few arcsec from the limb. We use an excellent 1024 by 1024 pixel CCD camera, operated at -100 C; the exposures are 10 to 30 min. Data reduction is done with ERAF running on a Sun Sparcstation.

Designing and testing the coronagraphic Modal Wavefront Sensor: a fast non-common path error sensor for high-contrast imaging

NASA Astrophysics Data System (ADS)

Wilby, M. J.; Keller, C. U.; Haffert, S.; Korkiakoski, V.; Snik, F.; Pietrow, A. G. M.

2016-07-01

Non-Common Path Errors (NCPEs) are the dominant factor limiting the performance of current astronomical high-contrast imaging instruments. If uncorrected, the resulting quasi-static speckle noise floor limits coronagraph performance to a raw contrast of typically 10-4, a value which does not improve with increasing integration time. The coronagraphic Modal Wavefront Sensor (cMWS) is a hybrid phase optic which uses holographic PSF copies to supply focal-plane wavefront sensing information directly from the science camera, whilst maintaining a bias-free coronagraphic PSF. This concept has already been successfully implemented on-sky at the William Herschel Telescope (WHT), La Palma, demonstrating both real-time wavefront sensing capability and successful extraction of slowly varying wavefront errors under a dominant and rapidly changing atmospheric speckle foreground. In this work we present an overview of the development of the cMWS and recent first light results obtained using the Leiden EXoplanet Instrument (LEXI), a high-contrast imager and high-dispersion spectrograph pathfinder instrument for the WHT.

PISCES High Contrast Integral Field Spectrograph Simulations and Data Reduction Pipeline

NASA Technical Reports Server (NTRS)

Llop Sayson, Jorge Domingo; Memarsadeghi, Nargess; McElwain, Michael W.; Gong, Qian; Perrin, Marshall; Brandt, Timothy; Grammer, Bryan; Greeley, Bradford; Hilton, George; Marx, Catherine

2015-01-01

The PISCES (Prototype Imaging Spectrograph for Coronagraphic Exoplanet Studies) is a lenslet array based integral field spectrograph (IFS) designed to advance the technology readiness of the WFIRST (Wide Field Infrared Survey Telescope)-AFTA (Astrophysics Focused Telescope Assets) high contrast Coronagraph Instrument. We present the end to end optical simulator and plans for the data reduction pipeline (DRP). The optical simulator was created with a combination of the IDL (Interactive Data Language)-based PROPER (optical propagation) library and Zemax (a MatLab script), while the data reduction pipeline is a modified version of the Gemini Planet Imager's (GPI) IDL pipeline. The simulations of the propagation of light through the instrument are based on Fourier transform algorithms. The DRP enables transformation of the PISCES IFS data to calibrated spectral data cubes.

India Allele Finder: a web-based annotation tool for identifying common alleles in next-generation sequencing data of Indian origin.

PubMed

Zhang, Jimmy F; James, Francis; Shukla, Anju; Girisha, Katta M; Paciorkowski, Alex R

2017-06-27

We built India Allele Finder, an online searchable database and command line tool, that gives researchers access to variant frequencies of Indian Telugu individuals, using publicly available fastq data from the 1000 Genomes Project. Access to appropriate population-based genomic variant annotation can accelerate the interpretation of genomic sequencing data. In particular, exome analysis of individuals of Indian descent will identify population variants not reflected in European exomes, complicating genomic analysis for such individuals. India Allele Finder offers improved ease-of-use to investigators seeking to identify and annotate sequencing data from Indian populations. We describe the use of India Allele Finder to identify common population variants in a disease quartet whole exome dataset, reducing the number of candidate single nucleotide variants from 84 to 7. India Allele Finder is freely available to investigators to annotate genomic sequencing data from Indian populations. Use of India Allele Finder allows efficient identification of population variants in genomic sequencing data, and is an example of a population-specific annotation tool that simplifies analysis and encourages international collaboration in genomics research.

GeneNetFinder2: Improved Inference of Dynamic Gene Regulatory Relations with Multiple Regulators.

PubMed

Han, Kyungsook; Lee, Jeonghoon

2016-01-01

A gene involved in complex regulatory interactions may have multiple regulators since gene expression in such interactions is often controlled by more than one gene. Another thing that makes gene regulatory interactions complicated is that regulatory interactions are not static, but change over time during the cell cycle. Most research so far has focused on identifying gene regulatory relations between individual genes in a particular stage of the cell cycle. In this study we developed a method for identifying dynamic gene regulations of several types from the time-series gene expression data. The method can find gene regulations with multiple regulators that work in combination or individually as well as those with single regulators. The method has been implemented as the second version of GeneNetFinder (hereafter called GeneNetFinder2) and tested on several gene expression datasets. Experimental results with gene expression data revealed the existence of genes that are not regulated by individual genes but rather by a combination of several genes. Such gene regulatory relations cannot be found by conventional methods. Our method finds such regulatory relations as well as those with multiple, independent regulators or single regulators, and represents gene regulatory relations as a dynamic network in which different gene regulatory relations are shown in different stages of the cell cycle. GeneNetFinder2 is available at http://bclab.inha.ac.kr/GeneNetFinder and will be useful for modeling dynamic gene regulations with multiple regulators.

5. VIEW EAST, height finder radar towers, radar tower (unknown ...

Library of Congress Historic Buildings Survey, Historic Engineering Record, Historic Landscapes Survey

5. VIEW EAST, height finder radar towers, radar tower (unknown function), prime search radar tower, operations building, and central heating plant - Fort Custer Military Reservation, P-67 Radar Station, .25 mile north of Dickman Road, east of Clark Road, Battle Creek, Calhoun County, MI

A General Tool for Evaluating High-Contrast Coronagraphic Telescope Performance Error Budgets

NASA Technical Reports Server (NTRS)

Marchen, Luis F.; Shaklan, Stuart B.

2009-01-01

This paper describes a general purpose Coronagraph Performance Error Budget (CPEB) tool that we have developed under the NASA Exoplanet Exploration Program. The CPEB automates many of the key steps required to evaluate the scattered starlight contrast in the dark hole of a space-based coronagraph. It operates in 3 steps: first, a CodeV or Zemax prescription is converted into a MACOS optical prescription. Second, a Matlab program calls ray-trace code that generates linear beam-walk and aberration sensitivity matrices for motions of the optical elements and line-of-sight pointing, with and without controlled coarse and fine-steering mirrors. Third, the sensitivity matrices are imported by macros into Excel 2007 where the error budget is created. Once created, the user specifies the quality of each optic from a predefined set of PSDs. The spreadsheet creates a nominal set of thermal and jitter motions and combines them with the sensitivity matrices to generate an error budget for the system. The user can easily modify the motion allocations to perform trade studies.

PathFinder: reconstruction and dynamic visualization of metabolic pathways.

PubMed

Goesmann, Alexander; Haubrock, Martin; Meyer, Folker; Kalinowski, Jörn; Giegerich, Robert

2002-01-01

Beyond methods for a gene-wise annotation and analysis of sequenced genomes new automated methods for functional analysis on a higher level are needed. The identification of realized metabolic pathways provides valuable information on gene expression and regulation. Detection of incomplete pathways helps to improve a constantly evolving genome annotation or discover alternative biochemical pathways. To utilize automated genome analysis on the level of metabolic pathways new methods for the dynamic representation and visualization of pathways are needed. PathFinder is a tool for the dynamic visualization of metabolic pathways based on annotation data. Pathways are represented as directed acyclic graphs, graph layout algorithms accomplish the dynamic drawing and visualization of the metabolic maps. A more detailed analysis of the input data on the level of biochemical pathways helps to identify genes and detect improper parts of annotations. As an Relational Database Management System (RDBMS) based internet application PathFinder reads a list of EC-numbers or a given annotation in EMBL- or Genbank-format and dynamically generates pathway graphs.

Design And Demonstration Of Band-limited Hybrid Coronagraph Masks For Space Imaging And Spectroscopy Of Exoplanetary Systems

NASA Astrophysics Data System (ADS)

Trauger, John T.; Moody, D. C.

2010-05-01

Among the leading architectures for the imaging and spectroscopy of nearby exoplanetary systems is the space coronagraph, which provides in principle very high (10 billion to one) suppression of diffracted and scattered starlight at very small separations (a few tenths of arcseconds) from the star. The concept of a band-limited Lyot coronagraph, introduced by Kuchner and Traub (2002), provides the theoretical basis for mathematically perfect starlight suppression. In practice, the optical characteristics of available materials and practical aspects of the fabrication processes impose limitations on contrast and spectral bandwidths that are achievable in the real world. Nevertheless, the band-limited Lyot coronagraph approach has produced the best laboratory validated performance among known types of internal coronagraph for contrast and spectral bandwidth, and alone it has demonstrated high-contrast imaging performance at levels required for exoplanet exploration. We report the design and fabrication of hybrid focal-plane masks for Lyot coronagraphy, composed of thickness-profiled metallic and dielectric thin films, vacuum deposited on a glass substrate. These masks are in principle band-limited in both the real and imaginary parts of the complex amplitude characteristics. Together with a deformable mirror for control of wavefront phase, these masks have the potential for contrast performance better than 10-9 at inner working angles of 3 lambda/D or better over spectral bandwidths of 20% or more, and with throughput efficiencies up to 60%. We report recent laboratory demonstrations of high contrast with nickel-dielectric masks, including the demonstration of 2x10-9 contrast with a 3 lambda/D inner working angle over 20% spectral bandwidths.

Cutoff Finder: A Comprehensive and Straightforward Web Application Enabling Rapid Biomarker Cutoff Optimization

PubMed Central

Budczies, Jan; Klauschen, Frederick; Sinn, Bruno V.; Győrffy, Balázs; Schmitt, Wolfgang D.; Darb-Esfahani, Silvia; Denkert, Carsten

2012-01-01

Gene or protein expression data are usually represented by metric or at least ordinal variables. In order to translate a continuous variable into a clinical decision, it is necessary to determine a cutoff point and to stratify patients into two groups each requiring a different kind of treatment. Currently, there is no standard method or standard software for biomarker cutoff determination. Therefore, we developed Cutoff Finder, a bundle of optimization and visualization methods for cutoff determination that is accessible online. While one of the methods for cutoff optimization is based solely on the distribution of the marker under investigation, other methods optimize the correlation of the dichotomization with respect to an outcome or survival variable. We illustrate the functionality of Cutoff Finder by the analysis of the gene expression of estrogen receptor (ER) and progesterone receptor (PgR) in breast cancer tissues. This distribution of these important markers is analyzed and correlated with immunohistologically determined ER status and distant metastasis free survival. Cutoff Finder is expected to fill a relevant gap in the available biometric software repertoire and will enable faster optimization of new diagnostic biomarkers. The tool can be accessed at http://molpath.charite.de/cutoff. PMID:23251644

LipidFinder: A computational workflow for discovery of lipids identifies eicosanoid-phosphoinositides in platelets

PubMed Central

O’Connor, Anne; Brasher, Christopher J.; Slatter, David A.; Meckelmann, Sven W.; Hawksworth, Jade I.; Allen, Stuart M.; O’Donnell, Valerie B.

2017-01-01

Accurate and high-quality curation of lipidomic datasets generated from plasma, cells, or tissues is becoming essential for cell biology investigations and biomarker discovery for personalized medicine. However, a major challenge lies in removing artifacts otherwise mistakenly interpreted as real lipids from large mass spectrometry files (>60 K features), while retaining genuine ions in the dataset. This requires powerful informatics tools; however, available workflows have not been tailored specifically for lipidomics, particularly discovery research. We designed LipidFinder, an open-source Python workflow. An algorithm is included that optimizes analysis based on users’ own data, and outputs are screened against online databases and categorized into LIPID MAPS classes. LipidFinder outperformed three widely used metabolomics packages using data from human platelets. We show a family of three 12-hydroxyeicosatetraenoic acid phosphoinositides (16:0/, 18:1/, 18:0/12-HETE-PI) generated by thrombin-activated platelets, indicating crosstalk between eicosanoid and phosphoinositide pathways in human cells. The software is available on GitHub (https://github.com/cjbrasher/LipidFinder), with full userguides. PMID:28405621

PPInterFinder--a mining tool for extracting causal relations on human proteins from literature.

PubMed

Raja, Kalpana; Subramani, Suresh; Natarajan, Jeyakumar

2013-01-01

One of the most common and challenging problem in biomedical text mining is to mine protein-protein interactions (PPIs) from MEDLINE abstracts and full-text research articles because PPIs play a major role in understanding the various biological processes and the impact of proteins in diseases. We implemented, PPInterFinder--a web-based text mining tool to extract human PPIs from biomedical literature. PPInterFinder uses relation keyword co-occurrences with protein names to extract information on PPIs from MEDLINE abstracts and consists of three phases. First, it identifies the relation keyword using a parser with Tregex and a relation keyword dictionary. Next, it automatically identifies the candidate PPI pairs with a set of rules related to PPI recognition. Finally, it extracts the relations by matching the sentence with a set of 11 specific patterns based on the syntactic nature of PPI pair. We find that PPInterFinder is capable of predicting PPIs with the accuracy of 66.05% on AIMED corpus and outperforms most of the existing systems. DATABASE URL: http://www.biomining-bu.in/ppinterfinder/

Applying the ResFinder and VirulenceFinder web-services for easy identification of acquired antibiotic resistance and E. coli virulence genes in bacteriophage and prophage nucleotide sequences

PubMed Central

Kleinheinz, Kortine Annina; Joensen, Katrine Grimstrup; Larsen, Mette Voldby

2014-01-01

Extensive research is currently being conducted on the use of bacteriophages for applications in human medicine, agriculture and food manufacturing. However, phages are important vehicles of horisontal gene transfer and play a significant role in bacterial evolution. As a result, concern has been raised that this increased use and dissemination of phages could result in spread of deleterious genes, e.g., antibiotic resistance and virulence genes. Meanwhile, in the wake of the genomic era, several tools have been developed for characterization of bacterial genomes. Here we describe how two of these tools, ResFinder and VirulenceFinder, can be used to identify acquired antibiotic resistance and virulence genes in phage genomes of interest. The general applicability of the tools is demonstrated on data sets of 1,642 phage genomes and 1,442 predicted prophages. PMID:24575358

Study of sungrazing comets with space-based coronagraphs: new possibilities offered by METIS on boar Solar Orbiter

NASA Astrophysics Data System (ADS)

Bemporad, Alessandro

Thanks to the launch of SOHO in the end of 1995 and to the continuous monitoring of the white light (WL) corona offered by the LASCO coronagraphs, it was discovered that sungrazing comets are much more common than previously thought. More than 2500 comets have been discovered over about 17 years, hence slightly less than a comet every 2 days is observed by coronagraphs. The white light emission seen by SOHO/LASCO and more recently also by the STEREO/SECCHI instruments provides information not only on the comet orbits (hence on its origin), but also on the dust-tail formation, dust-tail disconnection, occurrence of nucleus fragmentation and nucleus disintegration processes. Very interestingly, a few sungrazing comets have been also observed in the UV spectra by the SOHO UV Coronagraph Spectrometer (UVCS) and the strong emission observed in the H I Lyman-alpha lambda 1216 Å line provided direct information also on the water outgassing rate, tail chemical composition, nucleus size and occurrence of nucleus fragmentations. Moreover, the UV cometary emission provides a new method to estimate physical parameters of the coronal plasma met by the comet (like electron density, proton temperature and solar wind velocity), in a way that these comets can be considered as “local probes” for the solar corona. Unique observations of comets will be provided in the next future by the METIS coronagraph on board the Solar Orbiter mission: METIS will contemporary observe the corona in WL and in UV (HI Lyman-alpha), hence will be a unique instrument to study at the same time the transiting comets and the solar corona being crossed by the comets. Previous results and new possibilities offered by METIS on these topics are summarized and discussed here.

Science yield modeling with the Exoplanet Open-Source Imaging Mission Simulator (EXOSIMS)

NASA Astrophysics Data System (ADS)

Delacroix, Christian; Savransky, Dmitry; Garrett, Daniel; Lowrance, Patrick; Morgan, Rhonda

2016-08-01

We report on our ongoing development of EXOSIMS and mission simulation results for WFIRST. We present the interface control and the modular structure of the software, along with corresponding prototypes and class definitions for some of the software modules. More specifically, we focus on describing the main steps of our high-fidelity mission simulator EXOSIMS, i.e., the completeness, optical system and zodiacal light modules definition, the target list module filtering, and the creation of a planet population within our simulated universe module. For the latter, we introduce the integration of a recent mass-radius model from the FORECASTER software. We also provide custom modules dedicated to WFIRST using both the Hybrid Lyot Coronagraph (HLC) and the Shaped Pupil Coronagraph (SPC) for detection and characterization, respectively. In that context, we show and discuss the results of some preliminary WFIRST simulations, focusing on comparing different methods of integration time calculation, through ensembles (large numbers) of survey simulations.

MobilomeFINDER: web-based tools for in silico and experimental discovery of bacterial genomic islands

PubMed Central

Ou, Hong-Yu; He, Xinyi; Harrison, Ewan M.; Kulasekara, Bridget R.; Thani, Ali Bin; Kadioglu, Aras; Lory, Stephen; Hinton, Jay C. D.; Barer, Michael R.; Rajakumar, Kumar

2007-01-01

MobilomeFINDER (http://mml.sjtu.edu.cn/MobilomeFINDER) is an interactive online tool that facilitates bacterial genomic island or ‘mobile genome’ (mobilome) discovery; it integrates the ArrayOme and tRNAcc software packages. ArrayOme utilizes a microarray-derived comparative genomic hybridization input data set to generate ‘inferred contigs’ produced by merging adjacent genes classified as ‘present’. Collectively these ‘fragments’ represent a hypothetical ‘microarray-visualized genome (MVG)’. ArrayOme permits recognition of discordances between physical genome and MVG sizes, thereby enabling identification of strains rich in microarray-elusive novel genes. Individual tRNAcc tools facilitate automated identification of genomic islands by comparative analysis of the contents and contexts of tRNA sites and other integration hotspots in closely related sequenced genomes. Accessory tools facilitate design of hotspot-flanking primers for in silico and/or wet-science-based interrogation of cognate loci in unsequenced strains and analysis of islands for features suggestive of foreign origins; island-specific and genome-contextual features are tabulated and represented in schematic and graphical forms. To date we have used MobilomeFINDER to analyse several Enterobacteriaceae, Pseudomonas aeruginosa and Streptococcus suis genomes. MobilomeFINDER enables high-throughput island identification and characterization through increased exploitation of emerging sequence data and PCR-based profiling of unsequenced test strains; subsequent targeted yeast recombination-based capture permits full-length sequencing and detailed functional studies of novel genomic islands. PMID:17537813

TagFinder for the quantitative analysis of gas chromatography--mass spectrometry (GC-MS)-based metabolite profiling experiments.

PubMed

Luedemann, Alexander; Strassburg, Katrin; Erban, Alexander; Kopka, Joachim

2008-03-01

Typical GC-MS-based metabolite profiling experiments may comprise hundreds of chromatogram files, which each contain up to 1000 mass spectral tags (MSTs). MSTs are the characteristic patterns of approximately 25-250 fragment ions and respective isotopomers, which are generated after gas chromatography (GC) by electron impact ionization (EI) of the separated chemical molecules. These fragment ions are subsequently detected by time-of-flight (TOF) mass spectrometry (MS). MSTs of profiling experiments are typically reported as a list of ions, which are characterized by mass, chromatographic retention index (RI) or retention time (RT), and arbitrary abundance. The first two parameters allow the identification, the later the quantification of the represented chemical compounds. Many software tools have been reported for the pre-processing, the so-called curve resolution and deconvolution, of GC-(EI-TOF)-MS files. Pre-processing tools generate numerical data matrices, which contain all aligned MSTs and samples of an experiment. This process, however, is error prone mainly due to (i) the imprecise RI or RT alignment of MSTs and (ii) the high complexity of biological samples. This complexity causes co-elution of compounds and as a consequence non-selective, in other words impure MSTs. The selection and validation of optimal fragment ions for the specific and selective quantification of simultaneously eluting compounds is, therefore, mandatory. Currently validation is performed in most laboratories under human supervision. So far no software tool supports the non-targeted and user-independent quality assessment of the data matrices prior to statistical analysis. TagFinder may fill this gap. TagFinder facilitates the analysis of all fragment ions, which are observed in GC-(EI-TOF)-MS profiling experiments. The non-targeted approach allows the discovery of novel and unexpected compounds. In addition, mass isotopomer resolution is maintained by TagFinder processing. This

Planned Visible Emission Line Space Solar Coronagraph on-board Aditya-1

NASA Astrophysics Data System (ADS)

Singh, Jagdev

2012-07-01

An imaging visible emission line internally occulted coronagraph using 20 cm off axis parabolic mirror has been designed and planned to be launched in 2014. The coronagraph will have the facility to take images of the solar simultaneously, in the green [Fe xiv] and the red [Fe x] emission lines up to 1.5 solar radii with a frequency of about 3 Hz using 0.5 nm pass band filters and the images in continuum at 580 nm up to 3 solar radii. The satellite has been named as Aditya-1 and the scientific objectives of this payload are: (i) to investigate the existence of intensity oscillations for the study of wave driven coronal heating, (ii) to study the dynamics and formation of coronal loops and temperature structure of the coronal features, (iii) to study the origin, cause and acceleration of Coronal Mass Ejections (CME's) and other solar active features, and (iv) Coronal magnetic field topology and the 3-dimensional structures of the CMEs using polarization information. The fabrication of the pay load will be done in the laboratories of LEOS, SAC, ISAC, IIA and USO and launched by ISRO. Here we shall discuss the design and the realization of the mission.

FEM analysis of bonding process used for minimization of deformation of optical surface under Metis coronagraph mirrors manufacturing

NASA Astrophysics Data System (ADS)

Procháska, F.; Vít, T.; Matoušek, O.; Melich, R.

2016-11-01

High demands on the final surfaces micro-roughness as well as great shape accuracy have to be achieved under the manufacturing process of the precise mirrors for Metis orbital coronagraph. It is challenging engineering task with respect to lightweight design of the mirrors and resulting objectionable optical surface shape stability. Manufacturing of such optical elements is usually affected by number of various effects. Most of them are caused by instability of temperature field. It is necessary to explore, comprehend and consequently minimize all thermo - mechanical processes which take place during mirror cementing, grinding and polishing processes to minimize the optical surface deformation. Application of FEM simulation was proved as a useful tool to help to solve this task. FEM simulations were used to develop and virtually compare different mirror holders to minimize the residual stress generated by temperature changes and to suppress the shape deformation of the optical surface below the critical limit of about 100 nm.

The Mid-Infrared Imager/Spectrometer/Coronagraph Instrument (MISC) for the Origins Space Telescope

NASA Astrophysics Data System (ADS)

Roellig, Thomas; Sakon, Itsuki; Ennico, Kimberly; MISC Instrument Study Team, Origins Space Telescope Study Team

2018-01-01

The Origins Space Telescope (OST) is one of four potential flagship missions that have been funded by NASA for study for consideration in the upcoming Astrophysics Decadal Review expected in 2020. The OST telescope will be up to 9.3 meters in diameter, cooled to ~4K, and the mission will be optimized for efficient mid and far-infrared astronomical observations. An initial suite of five focal plane instruments are being baselined for this observatory. The Mid-infrared Imager Spectrometer Coronagraph (MISC) instrument will observe at the shortest wavelengths of any of these instruments, ranging from 5 to 38 microns, and consists of three separate optical modules providing imaging, spectroscopy, and coronagraph capabilities. The imaging camera covers a 3 arcmin x 3 arcmin field with filters and grisms from 6-38 microns. The spectrometers have spectral resolving powers R~1,000 from 9-38 microns (with a goal of 5-38 microns) and R~25,000 for 12-18 and 25-36 microns. The coronagraph covers 6-38 microns. There is a special densified pupil spectrometer channel that provides R~100-300 exoplanet transit and emission spectroscopy from 6-26 microns with very high spectro-photometric stability. As the shortest wavelength focal plane imager the MISC instrument will also be used for focal plane guiding as needed for the other OST science instruments. The science that MISC enables on OST includes: studying episodic accretion in protostellar envelopes, tracing the rise in metallacity and dust over cosmic time (when combined with far-infrared measurements), measuring dust in galactic outflows, assessing feedback from supernovae and AGN on the multi-phase ISM in galaxies, characterizing the AGN and starburst power in normal and massive galaxies, detecting exoplanet atmospheric biosignatures, and direct imaging of Jovian planets orbiting older stars at separations of 5-20 AU.

Stochastic parallel gradient descent based adaptive optics used for a high contrast imaging coronagraph

NASA Astrophysics Data System (ADS)

Dong, Bing; Ren, De-Qing; Zhang, Xi

2011-08-01

An adaptive optics (AO) system based on a stochastic parallel gradient descent (SPGD) algorithm is proposed to reduce the speckle noises in the optical system of a stellar coronagraph in order to further improve the contrast. The principle of the SPGD algorithm is described briefly and a metric suitable for point source imaging optimization is given. The feasibility and good performance of the SPGD algorithm is demonstrated by an experimental system featured with a 140-actuator deformable mirror and a Hartmann-Shark wavefront sensor. Then the SPGD based AO is applied to a liquid crystal array (LCA) based coronagraph to improve the contrast. The LCA can modulate the incoming light to generate a pupil apodization mask of any pattern. A circular stepped pattern is used in our preliminary experiment and the image contrast shows improvement from 10-3 to 10-4.5 at an angular distance of 2λ/D after being corrected by SPGD based AO.

CRISPRCasFinder, an update of CRISRFinder, includes a portable version, enhanced performance and integrates search for Cas proteins.

PubMed

Couvin, David; Bernheim, Aude; Toffano-Nioche, Claire; Touchon, Marie; Michalik, Juraj; Néron, Bertrand; C Rocha, Eduardo P; Vergnaud, Gilles; Gautheret, Daniel; Pourcel, Christine

2018-05-22

CRISPR (clustered regularly interspaced short palindromic repeats) arrays and their associated (Cas) proteins confer bacteria and archaea adaptive immunity against exogenous mobile genetic elements, such as phages or plasmids. CRISPRCasFinder allows the identification of both CRISPR arrays and Cas proteins. The program includes: (i) an improved CRISPR array detection tool facilitating expert validation based on a rating system, (ii) prediction of CRISPR orientation and (iii) a Cas protein detection and typing tool updated to match the latest classification scheme of these systems. CRISPRCasFinder can either be used online or as a standalone tool compatible with Linux operating system. All third-party software packages employed by the program are freely available. CRISPRCasFinder is available at https://crisprcas.i2bc.paris-saclay.fr.

Planet detection and spectroscopy in visible light with a single aperture telescope and a nulling coronagraph

NASA Technical Reports Server (NTRS)

Shao, Michael; Serabyn, Eugene; Levine, Bruce Martin; Beichman, Charles; Liu, Duncan; Martin, Stefan; Orton, Glen; Mennesson, Bertrand; Morgan, Rhonda; Velusamy, Thangasamy;

Simulating a Direction-Finder Search for an ELT

NASA Technical Reports Server (NTRS)

Bream, Bruce

2005-01-01

A computer program simulates the operation of direction-finding equipment engaged in a search for an emergency locator transmitter (ELT) aboard an aircraft that has crashed. The simulated equipment is patterned after the equipment used by the Civil Air Patrol to search for missing aircraft. The program is designed to be used for training in radio direction-finding and/or searching for missing aircraft without incurring the expense and risk of using real aircraft and ground search resources. The program places a hidden ELT on a map and enables the user to search for the location of the ELT by moving a 14 NASA Tech Briefs, March 2005 small aircraft image around the map while observing signal-strength and direction readings on a simulated direction- finding locator instrument. As the simulated aircraft is turned and moved on the map, the program updates the readings on the direction-finding instrument to reflect the current position and heading of the aircraft relative to the location of the ELT. The software is distributed in a zip file that contains an installation program. The software runs on the Microsoft Windows 9x, NT, and XP operating systems.

sapFinder: an R/Bioconductor package for detection of variant peptides in shotgun proteomics experiments.

PubMed

Wen, Bo; Xu, Shaohang; Sheynkman, Gloria M; Feng, Qiang; Lin, Liang; Wang, Quanhui; Xu, Xun; Wang, Jun; Liu, Siqi

2014-11-01

Single nucleotide variations (SNVs) located within a reading frame can result in single amino acid polymorphisms (SAPs), leading to alteration of the corresponding amino acid sequence as well as function of a protein. Accurate detection of SAPs is an important issue in proteomic analysis at the experimental and bioinformatic level. Herein, we present sapFinder, an R software package, for detection of the variant peptides based on tandem mass spectrometry (MS/MS)-based proteomics data. This package automates the construction of variation-associated databases from public SNV repositories or sample-specific next-generation sequencing (NGS) data and the identification of SAPs through database searching, post-processing and generation of HTML-based report with visualized interface. sapFinder is implemented as a Bioconductor package in R. The package and the vignette can be downloaded at http://bioconductor.org/packages/devel/bioc/html/sapFinder.html and are provided under a GPL-2 license. © The Author 2014. Published by Oxford University Press. All rights reserved. For Permissions, please e-mail: journals.permissions@oup.com.

Laser Range and Bearing Finder for Autonomous Missions

NASA Technical Reports Server (NTRS)

Granade, Stephen R.

2004-01-01

NASA has recently re-confirmed their interest in autonomous systems as an enabling technology for future missions. In order for autonomous missions to be possible, highly-capable relative sensor systems are needed to determine an object's distance, direction, and orientation. This is true whether the mission is autonomous in-space assembly, rendezvous and docking, or rover surface navigation. Advanced Optical Systems, Inc. has developed a wide-angle laser range and bearing finder (RBF) for autonomous space missions. The laser RBF has a number of features that make it well-suited for autonomous missions. It has an operating range of 10 m to 5 km, with a 5 deg field of view. Its wide field of view removes the need for scanning systems such as gimbals, eliminating moving parts and making the sensor simpler and space qualification easier. Its range accuracy is 1% or better. It is designed to operate either as a stand-alone sensor or in tandem with a sensor that returns range, bearing, and orientation at close ranges, such as NASA's Advanced Video Guidance Sensor. We have assembled the initial prototype and are currently testing it. We will discuss the laser RBF's design and specifications. Keywords: laser range and bearing finder, autonomous rendezvous and docking, space sensors, on-orbit sensors, advanced video guidance sensor

Providing a USSD location based clinic finder in South Africa: did it work?

PubMed

Parsons, Annie Neo; Timler, Dagmar

2014-01-01

A new mHealth service, Clinic Finder, was designed to provide a location-based service for any cellphone user in South Africa dialing a dedicated USSD string to find the nearest public primary health care facility. The service was funded by a European Union grant to Cell-Life to support the National Department of Health. Clinic Finder's aims were to provide a reliable and accurate service, and to assess both the most effective means of advertising the service as well as interest in the service. Users dialing the USSD string are asked to agree to geo-location (Vodacom and MTN users) or asked to enter their province, town and street (virtual network users and those choosing not to geo-locate). The service provider, AAT, sends the data to Cell-Life where an SMS with details of the nearest public primary health care facility is sent to the user by Cell-Life's open-source Communicate platform. The service was advertised on 3 days in 2014 using two different means: a newspaper ad on 20 May 2014 and Please Call Me ads on 30 July 2014 and 14 August 2014. 28.2% of unique users on 20 May 2014, 10.5% of unique users on 30 July 2014 and 92.8% of unique users on 14 August 2014 who agreed to geo-location successfully received SMSs. However, only 4.2%, 0.5%, and 2.4% of unique users responding to each advertisement who did not geo-locate then received an SMS. A small survey of users following the 20 May 2014 newspaper ad found overall interest in the idea of Clinic Finder, though unsuccessful users were more likely to dislike the service. The overall experience of using location based services and USSD for Clinic Finder suggests a need in the field of mHealth for wider availability of data on service usability and effectiveness.

The Relationship between Kolb's Learning Styles and StrengthsFinder's Talent Themes

ERIC Educational Resources Information Center

Caldwell, Adonna B.

2009-01-01

The purpose of this study was to investigate if there were relationships between college students' talent themes as defined by the Clifton StrengthsFinder(TM) Instrument and their learning style as defined by Kolb Learning Styles Inventory. Logistical regression methodology was utilized to assess the relationship between learning styles and talent…

Terrestrial Planet Finder Interferometer Technology Status and Plans

NASA Technical Reports Server (NTRS)

Lawson, Perter R.; Ahmed, A.; Gappinger, R. O.; Ksendzov, A.; Lay, O. P.; Martin, S. R.; Peters, R. D.; Scharf, D. P.; Wallace, J. K.; Ware, B.

2006-01-01

A viewgraph presentation on the technology status and plans for Terrestrial Planet Finder Interferometer is shown. The topics include: 1) The Navigator Program; 2) TPF-I Project Overview; 3) Project Organization; 4) Technology Plan for TPF-I; 5) TPF-I Testbeds; 6) Nulling Error Budget; 7) Nulling Testbeds; 8) Nulling Requirements; 9) Achromatic Nulling Testbed; 10) Single Mode Spatial Filter Technology; 11) Adaptive Nuller Testbed; 12) TPF-I: Planet Detection Testbed (PDT); 13) Planet Detection Testbed Phase Modulation Experiment; and 14) Formation Control Testbed.

Terrestrial Planet Finder Interferometer: 2007-2008 Progress and Plans

NASA Technical Reports Server (NTRS)

Lawson, P. R.; Lay, O. P.; Martin, S. R.; Peters, R. D.; Gappinger, R. O.; Ksendzov, A.; Scharf, D. P.; Booth, A. J.; Beichman, C. A.; Serabyn, E.;

AnimalFinder: A semi-automated system for animal detection in time-lapse camera trap images

USGS Publications Warehouse

Price Tack, Jennifer L.; West, Brian S.; McGowan, Conor P.; Ditchkoff, Stephen S.; Reeves, Stanley J.; Keever, Allison; Grand, James B.

2017-01-01

Although the use of camera traps in wildlife management is well established, technologies to automate image processing have been much slower in development, despite their potential to drastically reduce personnel time and cost required to review photos. We developed AnimalFinder in MATLAB® to identify animal presence in time-lapse camera trap images by comparing individual photos to all images contained within the subset of images (i.e. photos from the same survey and site), with some manual processing required to remove false positives and collect other relevant data (species, sex, etc.). We tested AnimalFinder on a set of camera trap images and compared the presence/absence results with manual-only review with white-tailed deer (Odocoileus virginianus), wild pigs (Sus scrofa), and raccoons (Procyon lotor). We compared abundance estimates, model rankings, and coefficient estimates of detection and abundance for white-tailed deer using N-mixture models. AnimalFinder performance varied depending on a threshold value that affects program sensitivity to frequently occurring pixels in a series of images. Higher threshold values led to fewer false negatives (missed deer images) but increased manual processing time, but even at the highest threshold value, the program reduced the images requiring manual review by ~40% and correctly identified >90% of deer, raccoon, and wild pig images. Estimates of white-tailed deer were similar between AnimalFinder and the manual-only method (~1–2 deer difference, depending on the model), as were model rankings and coefficient estimates. Our results show that the program significantly reduced data processing time and may increase efficiency of camera trapping surveys.

General Astrophysics and Comparative Planetology with the Terrestrial Planet Finder Missions

NASA Technical Reports Server (NTRS)

Kuchner, Marc J. (Editor)

2005-01-01

This document discusses the potential of the Terrestrial Planet Finder (TPF) for general astrophysics beyond its base mission, focusing on science obtainable with no or minimal modifications to the mission design, but also exploring possible modifications of TPF with high scientific merit and no impact on the basic search for extrasolar Earth analogs.

MacSyFinder: A Program to Mine Genomes for Molecular Systems with an Application to CRISPR-Cas Systems

PubMed Central

Abby, Sophie S.; Néron, Bertrand; Ménager, Hervé; Touchon, Marie; Rocha, Eduardo P. C.

2014-01-01

Motivation Biologists often wish to use their knowledge on a few experimental models of a given molecular system to identify homologs in genomic data. We developed a generic tool for this purpose. Results Macromolecular System Finder (MacSyFinder) provides a flexible framework to model the properties of molecular systems (cellular machinery or pathway) including their components, evolutionary associations with other systems and genetic architecture. Modelled features also include functional analogs, and the multiple uses of a same component by different systems. Models are used to search for molecular systems in complete genomes or in unstructured data like metagenomes. The components of the systems are searched by sequence similarity using Hidden Markov model (HMM) protein profiles. The assignment of hits to a given system is decided based on compliance with the content and organization of the system model. A graphical interface, MacSyView, facilitates the analysis of the results by showing overviews of component content and genomic context. To exemplify the use of MacSyFinder we built models to detect and class CRISPR-Cas systems following a previously established classification. We show that MacSyFinder allows to easily define an accurate “Cas-finder” using publicly available protein profiles. Availability and Implementation MacSyFinder is a standalone application implemented in Python. It requires Python 2.7, Hmmer and makeblastdb (version 2.2.28 or higher). It is freely available with its source code under a GPLv3 license at https://github.com/gem-pasteur/macsyfinder. It is compatible with all platforms supporting Python and Hmmer/makeblastdb. The “Cas-finder” (models and HMM profiles) is distributed as a compressed tarball archive as Supporting Information. PMID:25330359

Progress in four-beam nulling: results from the Terrestrial Planet Finder planet detection testbed

NASA Technical Reports Server (NTRS)

Martin, Stefan

2006-01-01

The Terrestrial Planet Finder Interferometer (TPF-I) is a large space telescope consisting of four 4 meter diameter telescopes flying in formation in space together with a fifth beam combiner spacecraft.

Progress in four-beam nulling: results from the Terrestrial Planet Finder Planet Detection Testbed

NASA Technical Reports Server (NTRS)

Martin, Stefan

2006-01-01

The Terrestrial Planet Finder Interferometer (TPF-I) is a large space telescope consisting of four 4 meter diameter telescopes flying in formation in space together with a fifth beam combiner spacecraft.

Cryogenic irradiation of an EMCCD for the WFIRST coronagraph: preliminary performance analysis

NASA Astrophysics Data System (ADS)

Bush, Nathan; Hall, David; Holland, Andrew; Burgon, Ross; Murray, Neil; Gow, Jason; Jordan, Douglas; Demers, Richard; Harding, Leon K.; Nemati, Bijan; Hoenk, Michael; Michaels, Darren; Peddada, Pavani

2016-08-01

The Wide Field Infra-Red Survey Telescope (WFIRST) is a NASA observatory scheduled to launch in the next decade that will settle essential questions in exoplanet science. The Wide Field Instrument (WFI) offers Hubble quality imaging over a 0.28 square degree field of view and will gather NIR statistical data on exoplanets through gravitational microlensing. An on-board coronagraph will for the first time perform direct imaging and spectroscopic analysis of exoplanets with properties analogous to those within our own solar system, including cold Jupiters, mini Neptunes and potentially super Earths. The Coronagraph Instrument (CGI) will be required to operate with low signal flux for long integration times, demanding all noise sources are kept to a minimum. The Electron Multiplication (EM)-CCD has been baselined for both the imaging and spectrograph cameras due its ability to operate with sub-electron effective read noise values with appropriate multiplication gain setting. The presence of other noise sources, however, such as thermal dark signal and Clock Induced Charge (CIC), need to be characterized and mitigated. In addition, operation within a space environment will subject the device to radiation damage that will degrade the Charge Transfer Effciency (CTE) of the device throughout the mission lifetime. Irradiation at the nominal instrument operating temperature has the potential to provide the best estimate of performance degradation that will be experienced in-flight, since the final population of silicon defects has been shown to be dependent upon the temperature at which the sensor is irradiated. Here we present initial findings from pre- and post- cryogenic irradiation testing of the e2v CCD201-20 BI EMCCD sensor, baselined for the WFIRST coronagraph instrument. The motivation for irradiation at cryogenic temperatures is discussed with reference to previous investigations of a similar nature. The results are presented in context with those from a previous

Optical design of visible emission line coronagraph on Indian space solar mission Aditya-L1

NASA Astrophysics Data System (ADS)

Raj Kumar, N.; Raghavendra Prasad, B.; Singh, Jagdev; Venkata, Suresh

2018-04-01

The ground based observations of the coronal emission lines using a coronagraph are affected by the short duration of clear sky and varying sky transparency. These conditions do not permit to study small amplitude variations in the coronal emission reliably necessary to investigate the process or processes involved in heating the coronal plasma and dynamics of solar corona. The proposed Visible Emission Line Coronagraph (VELC) over comes these limitations and will provide continuous observation 24 h a day needed for detailed studies of solar corona and drivers for space weather predictions. VELC payload onboard India's Aditya-L1 space mission is an internally occulted solar coronagraph for studying the temperature, velocity, density and heating of solar corona. To achieve the proposed science goals, an instrument which is capable of carrying out simultaneous imaging, spectroscopy and spectro-polarimetric observations of the solar corona close to the solar limb is required. VELC is designed with salient features of (a) Imaging solar corona at 500 nm with an angular resolution of 5 arcsec over a FOV of 1.05Ro to 3Ro (Ro:Solar radius) (b) Simultaneous multi-slit spectroscopy at 530.3 nm [Fe XIV],789.2 nm [Fe XI] and 1074.7 nm [Fe XIII] with spectral dispersion of 28mÅ, 31mÅ and 202mÅ per pixel respectively, over a FOV of 1.05Ro to 1.5Ro. (c) Multi-slit dual beam spectro-polarimetry at 1074.7 nm. All the components of instrument have been optimized in view of the scientific objectives and requirements of space payloads. In this paper we present the details of optical configuration and the expected performance of the payload.

Conceptual Design of the Coronagraphic High Angular Resolution Imaging Spectrograph (CHARIS) for the Subaru Telescope

NASA Technical Reports Server (NTRS)

Peters, Mary Anne; Groff, Tyler; Kasdin, N. Jeremy; McElwain, Michael W.; Galvin, Michael; Carr, Michael A.; Lupton, Robert; Gunn, James E.; Knapp, Gillian; Gong, Qian;

On Advanced Estimation Techniques for Exoplanet Detection and Characterization Using Ground-based Coronagraphs

PubMed Central

Lawson, Peter R.; Poyneer, Lisa; Barrett, Harrison; Frazin, Richard; Caucci, Luca; Devaney, Nicholas; Furenlid, Lars; Gładysz, Szymon; Guyon, Olivier; Krist, John; Maire, Jérôme; Marois, Christian; Mawet, Dimitri; Mouillet, David; Mugnier, Laurent; Pearson, Iain; Perrin, Marshall; Pueyo, Laurent; Savransky, Dmitry

2015-01-01

The direct imaging of planets around nearby stars is exceedingly difficult. Only about 14 exoplanets have been imaged to date that have masses less than 13 times that of Jupiter. The next generation of planet-finding coronagraphs, including VLT-SPHERE, the Gemini Planet Imager, Palomar P1640, and Subaru HiCIAO have predicted contrast performance of roughly a thousand times less than would be needed to detect Earth-like planets. In this paper we review the state of the art in exoplanet imaging, most notably the method of Locally Optimized Combination of Images (LOCI), and we investigate the potential of improving the detectability of faint exoplanets through the use of advanced statistical methods based on the concepts of the ideal observer and the Hotelling observer. We propose a formal comparison of techniques using a blind data challenge with an evaluation of performance using the Receiver Operating Characteristic (ROC) and Localization ROC (LROC) curves. We place particular emphasis on the understanding and modeling of realistic sources of measurement noise in ground-based AO-corrected coronagraphs. The work reported in this paper is the result of interactions between the co-authors during a week-long workshop on exoplanet imaging that was held in Squaw Valley, California, in March of 2012. PMID:26347393

On Advanced Estimation Techniques for Exoplanet Detection and Characterization using Ground-Based Coronagraphs

NASA Technical Reports Server (NTRS)

Lawson, Peter R.; Frazin, Richard; Barrett, Harrison; Caucci, Luca; Devaney, Nicholas; Furenlid, Lars; Gladysz, Szymon; Guyon, Olivier; Krist, John; Maire, Jerome;

On Advanced Estimation Techniques for Exoplanet Detection and Characterization Using Ground-based Coronagraphs.

PubMed

Lawson, Peter R; Poyneer, Lisa; Barrett, Harrison; Frazin, Richard; Caucci, Luca; Devaney, Nicholas; Furenlid, Lars; Gładysz, Szymon; Guyon, Olivier; Krist, John; Maire, Jérôme; Marois, Christian; Mawet, Dimitri; Mouillet, David; Mugnier, Laurent; Pearson, Iain; Perrin, Marshall; Pueyo, Laurent; Savransky, Dmitry

2012-07-01

The direct imaging of planets around nearby stars is exceedingly difficult. Only about 14 exoplanets have been imaged to date that have masses less than 13 times that of Jupiter. The next generation of planet-finding coronagraphs, including VLT-SPHERE, the Gemini Planet Imager, Palomar P1640, and Subaru HiCIAO have predicted contrast performance of roughly a thousand times less than would be needed to detect Earth-like planets. In this paper we review the state of the art in exoplanet imaging, most notably the method of Locally Optimized Combination of Images (LOCI), and we investigate the potential of improving the detectability of faint exoplanets through the use of advanced statistical methods based on the concepts of the ideal observer and the Hotelling observer. We propose a formal comparison of techniques using a blind data challenge with an evaluation of performance using the Receiver Operating Characteristic (ROC) and Localization ROC (LROC) curves. We place particular emphasis on the understanding and modeling of realistic sources of measurement noise in ground-based AO-corrected coronagraphs. The work reported in this paper is the result of interactions between the co-authors during a week-long workshop on exoplanet imaging that was held in Squaw Valley, California, in March of 2012.

On advanced estimation techniques for exoplanet detection and characterization using ground-based coronagraphs

NASA Astrophysics Data System (ADS)

Lawson, Peter R.; Poyneer, Lisa; Barrett, Harrison; Frazin, Richard; Caucci, Luca; Devaney, Nicholas; Furenlid, Lars; Gładysz, Szymon; Guyon, Olivier; Krist, John; Maire, Jérôme; Marois, Christian; Mawet, Dimitri; Mouillet, David; Mugnier, Laurent; Pearson, Iain; Perrin, Marshall; Pueyo, Laurent; Savransky, Dmitry

2012-07-01

The direct imaging of planets around nearby stars is exceedingly difficult. Only about 14 exoplanets have been imaged to date that have masses less than 13 times that of Jupiter. The next generation of planet-finding coronagraphs, including VLT-SPHERE, the Gemini Planet Imager, Palomar P1640, and Subaru HiCIAO have predicted contrast performance of roughly a thousand times less than would be needed to detect Earth-like planets. In this paper we review the state of the art in exoplanet imaging, most notably the method of Locally Optimized Combination of Images (LOCI), and we investigate the potential of improving the detectability of faint exoplanets through the use of advanced statistical methods based on the concepts of the ideal observer and the Hotelling observer. We propose a formal comparison of techniques using a blind data challenge with an evaluation of performance using the Receiver Operating Characteristic (ROC) and Localization ROC (LROC) curves. We place particular emphasis on the understanding and modeling of realistic sources of measurement noise in ground-based AO-corrected coronagraphs. The work reported in this paper is the result of interactions between the co-authors during a week-long workshop on exoplanet imaging that was held in Squaw Valley, California, in March of 2012.

SynergyFinder: a web application for analyzing drug combination dose-response matrix data.

PubMed

Ianevski, Aleksandr; He, Liye; Aittokallio, Tero; Tang, Jing

2017-08-01

Rational design of drug combinations has become a promising strategy to tackle the drug sensitivity and resistance problem in cancer treatment. To systematically evaluate the pre-clinical significance of pairwise drug combinations, functional screening assays that probe combination effects in a dose-response matrix assay are commonly used. To facilitate the analysis of such drug combination experiments, we implemented a web application that uses key functions of R-package SynergyFinder, and provides not only the flexibility of using multiple synergy scoring models, but also a user-friendly interface for visualizing the drug combination landscapes in an interactive manner. The SynergyFinder web application is freely accessible at https://synergyfinder.fimm.fi ; The R-package and its source-code are freely available at http://bioconductor.org/packages/release/bioc/html/synergyfinder.html . jing.tang@helsinki.fi. © The Author(s) 2017. Published by Oxford University Press.

State-of-the-Art Fusion-Finder Algorithms Sensitivity and Specificity

PubMed Central

Carrara, Matteo; Beccuti, Marco; Lazzarato, Fulvio; Cavallo, Federica; Cordero, Francesca; Donatelli, Susanna; Calogero, Raffaele A.

2013-01-01

Background. Gene fusions arising from chromosomal translocations have been implicated in cancer. RNA-seq has the potential to discover such rearrangements generating functional proteins (chimera/fusion). Recently, many methods for chimeras detection have been published. However, specificity and sensitivity of those tools were not extensively investigated in a comparative way. Results. We tested eight fusion-detection tools (FusionHunter, FusionMap, FusionFinder, MapSplice, deFuse, Bellerophontes, ChimeraScan, and TopHat-fusion) to detect fusion events using synthetic and real datasets encompassing chimeras. The comparison analysis run only on synthetic data could generate misleading results since we found no counterpart on real dataset. Furthermore, most tools report a very high number of false positive chimeras. In particular, the most sensitive tool, ChimeraScan, reports a large number of false positives that we were able to significantly reduce by devising and applying two filters to remove fusions not supported by fusion junction-spanning reads or encompassing large intronic regions. Conclusions. The discordant results obtained using synthetic and real datasets suggest that synthetic datasets encompassing fusion events may not fully catch the complexity of RNA-seq experiment. Moreover, fusion detection tools are still limited in sensitivity or specificity; thus, there is space for further improvement in the fusion-finder algorithms. PMID:23555082

Modeling astronomical adaptive optics performance with temporally filtered Wiener reconstruction of slope data

NASA Astrophysics Data System (ADS)

Correia, Carlos M.; Bond, Charlotte Z.; Sauvage, Jean-François; Fusco, Thierry; Conan, Rodolphe; Wizinowich, Peter L.

2017-10-01

We build on a long-standing tradition in astronomical adaptive optics (AO) of specifying performance metrics and error budgets using linear systems modeling in the spatial-frequency domain. Our goal is to provide a comprehensive tool for the calculation of error budgets in terms of residual temporally filtered phase power spectral densities and variances. In addition, the fast simulation of AO-corrected point spread functions (PSFs) provided by this method can be used as inputs for simulations of science observations with next-generation instruments and telescopes, in particular to predict post-coronagraphic contrast improvements for planet finder systems. We extend the previous results and propose the synthesis of a distributed Kalman filter to mitigate both aniso-servo-lag and aliasing errors whilst minimizing the overall residual variance. We discuss applications to (i) analytic AO-corrected PSF modeling in the spatial-frequency domain, (ii) post-coronagraphic contrast enhancement, (iii) filter optimization for real-time wavefront reconstruction, and (iv) PSF reconstruction from system telemetry. Under perfect knowledge of wind velocities, we show that $\\sim$60 nm rms error reduction can be achieved with the distributed Kalman filter embodying anti- aliasing reconstructors on 10 m class high-order AO systems, leading to contrast improvement factors of up to three orders of magnitude at few ${\\lambda}/D$ separations ($\\sim1-5{\\lambda}/D$) for a 0 magnitude star and reaching close to one order of magnitude for a 12 magnitude star.

Computer vision applications for coronagraphic optical alignment and image processing.

PubMed

Savransky, Dmitry; Thomas, Sandrine J; Poyneer, Lisa A; Macintosh, Bruce A

2013-05-10

Modern coronagraphic systems require very precise alignment between optical components and can benefit greatly from automated image processing. We discuss three techniques commonly employed in the fields of computer vision and image analysis as applied to the Gemini Planet Imager, a new facility instrument for the Gemini South Observatory. We describe how feature extraction and clustering methods can be used to aid in automated system alignment tasks, and also present a search algorithm for finding regular features in science images used for calibration and data processing. Along with discussions of each technique, we present our specific implementation and show results of each one in operation.

Status of the Terrestrial Planet Finder Interferometer (TPF-I)

NASA Technical Reports Server (NTRS)

Beichman, Charles; Lawson, Peter; Lay, Oliver; Ahmed, Asif; Unwin, Steve; Johnston, K.

2006-01-01

The interferometric version of the Terrestrial Planet Finder (TPF-I) has the potential to find and characterize earth-sized planets in the habitable zones of over 250 nearby stars and to search for life using biomarkers in the atmospheres of any planets found. The scientific case for such a mission continues to be strengthened by on-going progress in the detection of planets via indirect means. This paper summarizes the status of TPF-I, illustrative scientific requirements for the mission, and its enabling technologies.

Influence of misalignments on the performance of externally occulted solar coronagraphs. Application to PROBA-3/ASPIICS

NASA Astrophysics Data System (ADS)

Shestov, S. V.; Zhukov, A. N.

2018-05-01

Context. The ASPIICS instrument is a novel externally occulted coronagraph that will be launched on board the PROBA-3 mission of the European Space Agency. The external occulter will be placed on one satellite 150 m ahead of the second satellite that will carry an optical instrument. During 6 h out of 19.38 h of orbit, the satellites will fly in a precise (accuracy around a few millimeters) formation, constituting a giant externally occulted coronagraph. The large distance between the external occulter and the primary objective will allow observations of the white-light solar corona starting from extremely low heights 1.1R⊙. Aims: We intend to analyze influence of shifts of the satellites and misalignments of optical elements on the ASPIICS performance in terms of diffracted light. Based on the quantitative influence of misalignments on diffracted light, we provide a recipe for choosing the size of the internal occulter (IO) to achieve a trade-off between the minimal height of observations and sustainability to possible misalignments. Methods: We considered different types of misalignments and analyzed their influence from optical and computational points of view. We implemented a numerical model of the diffracted light and its propagation through the optical system and computed intensities of diffracted light throughout the instrument. Our numerical approach is based on a model from the literature that considered the axisymmetrical case. Here we extend the model to include nonsymmetrical cases and possible misalignments. Results: The numerical computations fully confirm the main properties of the diffracted light that we obtained from semi-analytical consideration. We obtain that relative influences of various misalignments are significantly different. We show that the internal occulter with RIO = 1.694 mm = 1.1R⊙ is large enough to compensate possible misalignments expected to occur in PROBA-3/ASPIICS. Besides that we show that apodizing the edge of the

SciRide Finder: a citation-based paradigm in biomedical literature search.

PubMed

Volanakis, Adam; Krawczyk, Konrad

2018-04-18

There are more than 26 million peer-reviewed biomedical research items according to Medline/PubMed. This breadth of information is indicative of the progress in biomedical sciences on one hand, but an overload for scientists performing literature searches on the other. A major portion of scientific literature search is to find statements, numbers and protocols that can be cited to build an evidence-based narrative for a new manuscript. Because science builds on prior knowledge, such information has likely been written out and cited in an older manuscript. Thus, Cited Statements, pieces of text from scientific literature supported by citing other peer-reviewed publications, carry significant amount of condensed information on prior art. Based on this principle, we propose a literature search service, SciRide Finder (finder.sciride.org), which constrains the search corpus to such Cited Statements only. We demonstrate that Cited Statements can carry different information to this found in titles/abstracts and full text, giving access to alternative literature search results than traditional search engines. We further show how presenting search results as a list of Cited Statements allows researchers to easily find information to build an evidence-based narrative for their own manuscripts.

Fabrication and Characteristics of Free Standing Shaped Pupil Masks for TPF-Coronagraph

NASA Technical Reports Server (NTRS)

Balasubramanian, Kunjithapatham; Echternach, Pierre M.; Dickie, Matthew R.; Muller, Richard E.; White, Victor E.; Hoppe, Daniel J.; Shaklan, Stuart B.; Belikov, Ruslan; Kasdin, N. Jeremy; Vanderbei, Robert J.;

Wavefront correction with Kalman filtering for the WFIRST-AFTA coronagraph instrument

NASA Astrophysics Data System (ADS)

Riggs, A. J. Eldorado; Kasdin, N. Jeremy; Groff, Tyler D.

2015-09-01

The only way to characterize most exoplanets spectrally is via direct imaging. For example, the Coronagraph Instrument (CGI) on the proposed Wide-Field Infrared Survey Telescope-Astrophysics Focused Telescope Assets (WFIRST-AFTA) mission plans to image and characterize several cool gas giants around nearby stars. The integration time on these faint exoplanets will be many hours to days. A crucial assumption for mission planning is that the time required to dig a dark hole (a region of high star-to-planet contrast) with deformable mirrors is small compared to science integration time. The science camera must be used as the wavefront sensor to avoid non-common path aberrations, but this approach can be quite time intensive. Several estimation images are required to build an estimate of the starlight electric field before it can be partially corrected, and this process is repeated iteratively until high contrast is reached. Here we present simulated results of batch process and recursive wavefront estimation schemes. In particular, we test a Kalman filter and an iterative extended Kalman filter (IEKF) to reduce the total exposure time and improve the robustness of wavefront correction for the WFIRST-AFTA CGI. An IEKF or other nonlinear filter also allows recursive, real-time estimation of sources incoherent with the star, such as exoplanets and disks, and may therefore reduce detection uncertainty.

LinkFinder: An expert system that constructs phylogenic trees

NASA Technical Reports Server (NTRS)

Inglehart, James; Nelson, Peter C.

1991-01-01

An expert system has been developed using the C Language Integrated Production System (CLIPS) that automates the process of constructing DNA sequence based phylogenies (trees or lineages) that indicate evolutionary relationships. LinkFinder takes as input homologous DNA sequences from distinct individual organisms. It measures variations between the sequences, selects appropriate proportionality constants, and estimates the time that has passed since each pair of organisms diverged from a common ancestor. It then designs and outputs a phylogenic map summarizing these results. LinkFinder can find genetic relationships between different species, and between individuals of the same species, including humans. It was designed to take advantage of the vast amount of sequence data being produced by the Genome Project, and should be of value to evolution theorists who wish to utilize this data, but who have no formal training in molecular genetics. Evolutionary theory holds that distinct organisms carrying a common gene inherited that gene from a common ancestor. Homologous genes vary from individual to individual and species to species, and the amount of variation is now believed to be directly proportional to the time that has passed since divergence from a common ancestor. The proportionality constant must be determined experimentally; it varies considerably with the types of organisms and DNA molecules under study. Given an appropriate constant, and the variation between two DNA sequences, a simple linear equation gives the divergence time.

HPF: The Habitable Zone Planet Finder at the Hobby-Eberly Telescope

NASA Astrophysics Data System (ADS)

Wright, Jason T.; Mahadevan, Suvrath; Hearty, Fred; Monson, Andy; Stefansson, Gudmundur; Ramsey, Larry; Ninan, Joe; Bender, Chad; Kaplan, Kyle; Roy, Arpita; Terrien, Ryan; Robertson, Paul; Halverson, Sam; Schwab, Christian; Kanodia, Shubham

2018-01-01

The Habitable Zone Planet Finder (HPF) is an ultra-stable NIR (ZYJ) high resolution echelle spectrograph on the 10-m Hobby-Eberly Telescope capable of 1-3 m/s Doppler velocimetry on nearby late M dwarfs (M4-M9). This precision is sufficient to detect terrestrial planets in the Habitable Zones of these relatively unexplored stars. Here we present its capabilities and early commissioning results.

MinFinder v2.0: An improved version of MinFinder

NASA Astrophysics Data System (ADS)

Tsoulos, Ioannis G.; Lagaris, Isaac E.

2008-10-01

A new version of the "MinFinder" program is presented that offers an augmented linking procedure for Fortran-77 subprograms, two additional stopping rules and a new start-point rejection mechanism that saves a significant portion of gradient and function evaluations. The method is applied on a set of standard test functions and the results are reported. New version program summaryProgram title: MinFinder v2.0 Catalogue identifier: ADWU_v2_0 Program summary URL:http://cpc.cs.qub.ac.uk/summaries/ADWU_v2_0.html Program obtainable from: CPC Program Library, Queen's University, Belfast, N. Ireland Licensing provisions: Standard CPC Licence, http://cpc.cs.qub.ac.uk/licence/licence.html No. of lines in distributed program, including test data, etc.: 14 150 No. of bytes in distributed program, including test data, etc.: 218 144 Distribution format: tar.gz Programming language used: GNU C++, GNU FORTRAN, GNU C Computer: The program is designed to be portable in all systems running the GNU C++ compiler Operating system: Linux, Solaris, FreeBSD RAM: 200 000 bytes Classification: 4.9 Catalogue identifier of previous version: ADWU_v1_0 Journal reference of previous version: Computer Physics Communications 174 (2006) 166-179 Does the new version supersede the previous version?: Yes Nature of problem: A multitude of problems in science and engineering are often reduced to minimizing a function of many variables. There are instances that a local optimum does not correspond to the desired physical solution and hence the search for a better solution is required. Local optimization techniques can be trapped in any local minimum. Global optimization is then the appropriate tool. For example, solving a non-linear system of equations via optimization, one may encounter many local minima that do not correspond to solutions, i.e. they are far from zero. Solution method: Using a uniform pdf, points are sampled from a rectangular domain. A clustering technique, based on a typical distance

Terrestrial Planet Finder Interferometer: Architecture, Mission Design, and Technology Development

NASA Technical Reports Server (NTRS)

Henry, Curt

2004-01-01

This slide presentation represents an overview progress report about the system design and technology development of two interferometer concepts studied for the Terrestrial Planet Finder (TPF) project. The two concepts are a structurally-connected interferometer (SCI) intended to fulfill minimum TPF science goals and a formation-flying interferometer (FFI) intended to fulfill full science goals. Described are major trades, analyses, and technology experiments completed. Near term plans are also described. This paper covers progress since August 2003

LC-IMS-MS Feature Finder: detecting multidimensional liquid chromatography, ion mobility and mass spectrometry features in complex datasets.

PubMed

Crowell, Kevin L; Slysz, Gordon W; Baker, Erin S; LaMarche, Brian L; Monroe, Matthew E; Ibrahim, Yehia M; Payne, Samuel H; Anderson, Gordon A; Smith, Richard D

2013-11-01

The addition of ion mobility spectrometry to liquid chromatography-mass spectrometry experiments requires new, or updated, software tools to facilitate data processing. We introduce a command line software application LC-IMS-MS Feature Finder that searches for molecular ion signatures in multidimensional liquid chromatography-ion mobility spectrometry-mass spectrometry (LC-IMS-MS) data by clustering deisotoped peaks with similar monoisotopic mass, charge state, LC elution time and ion mobility drift time values. The software application includes an algorithm for detecting and quantifying co-eluting chemical species, including species that exist in multiple conformations that may have been separated in the IMS dimension. LC-IMS-MS Feature Finder is available as a command-line tool for download at http://omics.pnl.gov/software/LC-IMS-MS_Feature_Finder.php. The Microsoft.NET Framework 4.0 is required to run the software. All other dependencies are included with the software package. Usage of this software is limited to non-profit research to use (see README). rds@pnnl.gov. Supplementary data are available at Bioinformatics online.

Effects of Optical-density and Phase Dispersion of an Imperfect Band-limited Occulting Mask on the Broadband Performance of a TPF Coronagraph

NASA Technical Reports Server (NTRS)

Sidiek, Erkin; Balasubramanian, Kunjithapatham

2007-01-01

Practical image-plane occulting masks required by high-contrast imaging systems such as the TPF-Coronagraph introduce phase errors into the transmitting beam., or, equivalently, diffracts the residual starlight into the area of the final image plane used for detecting exo-planets. Our group at JPL has recently proposed spatially Profiled metal masks that can be designed to have zero parasitic phase at the center wavelength of the incoming broadband light with small amounts of' 00 and phase dispersions at other wavelengths. Work is currently underway to design. fabricate and characterize such image-plane masks. In order to gain some understanding on the behaviors of these new imperfect band-limited occulting masks and clarify how such masks utilizing different metals or alloys compare with each other, we carried out some modeling and simulations on the contrast performance of the high-contrast imaging testbed (HCIT) at .JPL. In this paper we describe the details of our simulations and present our results.

The impact of radiation damage on photon counting with an EMCCD for the WFIRST-AFTA coronagraph

NASA Astrophysics Data System (ADS)

Bush, Nathan; Hall, David; Holland, Andrew; Burgon, Ross; Murray, Neil; Gow, Jason; Soman, Matthew; Jordan, Douglas; Demers, Richard; Harding, Leon; Hoenk, Michael; Michaels, Darren; Nemati, Bijan; Peddada, Pavani

2015-09-01

WFIRST-AFTA is a 2.4m class NASA observatory designed to address a wide range of science objectives using two complementary scientific payloads. The Wide Field Instrument (WFI) offers Hubble quality imaging over a 0.28 square degree field of view, and will gather NIR statistical data on exoplanets through gravitational microlensing. The second instrument is a high contrast coronagraph that will carry out the direct imaging and spectroscopic analysis of exoplanets, providing a means to probe the structure and composition of planetary systems. The coronagraph instrument is expected to operate in low photon flux for long integration times, meaning all noise sources must be kept to a minimum. In order to satisfy the low noise requirements, the Electron Multiplication (EM)-CCD has been baselined for both the imaging and spectrograph cameras. The EMCCD was selected in comparison with other candidates because of its low effective electronic read noise at sub-electron values with appropriate multiplication gain setting. The presence of other noise sources, however, such as thermal dark signal and Clock Induced Charge (CIC), need to be characterised and mitigated. In addition, operation within a space environment will subject the device to radiation damage that will degrade the Charge Transfer Efficiency (CTE) of the device throughout the mission lifetime. Here we present our latest results from pre- and post-irradiation testing of the e2v CCD201-20 BI EMCCD sensor, baselined for the WFIRST-AFTA coronagraph instrument. A description of the detector technology is presented, alongside considerations for operation within a space environment. The results from a room temperature irradiation are discussed in context with the nominal operating requirements of AFTA-C and future work which entails a cryogenic irradiation of the CCD201-20 is presented.

Commissioning and first light results of an L'-band vortex coronagraph with the Keck II adaptive optics NIRC2 science instrument

NASA Astrophysics Data System (ADS)

Femenía Castellá, Bruno; Serabyn, Eugene; Mawet, Dimitri; Absil, Olivier; Wizinowich, Peter; Matthews, Keith; Huby, Elsa; Bottom, Michael; Campbell, Randy; Chan, Dwight; Carlomagno, Brunella; Cetre, Sylvain; Defrère, Denis; Delacroix, Christian; Gomez Gonzalez, Carlos; Jolivet, Aïssa; Karlsson, Mikael; Lanclos, Kyle; Lilley, Scott; Milner, Steven; Ngo, Henry; Reggiani, Maddalena; Simmons, Julia; Tran, Hien; Vargas Catalan, Ernesto; Wertz, Olivier

2016-07-01

On March 2015 an L'-band vortex coronagraph based on an Annular Groove Phase Mask made up of a diamond sub-wavelength grating was installed on NIRC2 as a demonstration project. This vortex coronagraph operates in the L' band not only in order to take advantage from the favorable star/planet contrast ratio when observing beyond the K band, but also to exploit the fact that the Keck II Adaptive Optics (AO) system delivers nearly extreme adaptive optics image quality (Strehl ratios values near 90%) at 3.7μm. We describe the hardware installation of the vortex phase mask during a routine NIRC2 service mission. The success of the project depends on extensive software development which has allowed the achievement of exquisite real-time pointing control as well as further contrast improvements by using speckle nulling to mitigate the effect of static speckles. First light of the new coronagraphic mode was on June 2015 with already very good initial results. Subsequent commissioning nights were interlaced with science nights by members of the VORTEX team with their respective scientific programs. The new capability and excellent results so far have motivated the VORTEX team and the Keck Science Steering Committee (KSSC) to offer the new mode in shared risk mode for 2016B.

A coronagraphic search for brown dwarfs around nearby stars

NASA Technical Reports Server (NTRS)

Nakajima, T.; Durrance, S. T.; Golimowski, D. A.; Kulkarni, S. R.

1994-01-01

Brown dwarf companions have been searched for around stars within 10 pc of the Sun using the Johns-Hopkins University Adaptive Optics Coronagraph (AOC), a stellar coronagraph with an image stabilizer. The AOC covers the field around the target star with a minimum search radius of 1 sec .5 and a field of view of 1 arcmin sq. We have reached an unprecedented dynamic range of Delta m = 13 in our search for faint companions at I band. Comparison of our survey with other brown dwarf searches shows that the AOC technique is unique in its dynamic range while at the same time just as sensitive to brown dwarfs as the recent brown dwarf surveys. The present survey covered 24 target stars selected from the Gliese catalog. A total of 94 stars were detected in 16 fields. The low-latitude fields are completely dominated by background star contamination. Kolmogorov-Smirnov tests were carried out for a sample restricted to high latitudes and a sample with small angular separations. The high-latitude sample (b greater than or equal to 44 deg) appears to show spatial concentration toward target stars. The small separation sample (Delta Theta less than 20 sec) shows weaker dependence on Galactic coordinates than field stars. These statistical tests suggest that both the high-latitude sample and the small separation sample can include a substantial fraction of true companions. However, the nature of these putative companions is mysterious. They are too faint to be white dwarfs and too blue for brown dwarfs. Ignoring the signif icance of the statistical tests, we can reconcile most of the detections with distant main-sequence stars or white dwarfs except for a candidate next to GL 475. Given the small size of our sample, we conclude that considerably more targets need to be surveyed before a firm conclusion on the possibility of a new class of companions can be made.

75 FR 25864 - Submission for OMB Review; Comment Request; Lost People Finder System

Federal Register 2010, 2011, 2012, 2013, 2014

2010-05-10

... descriptive information about found (recovered) victims in a structured format, e.g., name (if available), age... person finder systems. NLM would also use the data to evaluate the functioning and utility of the lost... from the public and affected agencies should address one or more of the following points: (1) Evaluate...

Statechart Analysis with Symbolic PathFinder

NASA Technical Reports Server (NTRS)

Pasareanu, Corina S.

2012-01-01

We report here on our on-going work that addresses the automated analysis and test case generation for software systems modeled using multiple Statechart formalisms. The work is motivated by large programs such as NASA Exploration, that involve multiple systems that interact via safety-critical protocols and are designed with different Statechart variants. To verify these safety-critical systems, we have developed Polyglot, a framework for modeling and analysis of model-based software written using different Statechart formalisms. Polyglot uses a common intermediate representation with customizable Statechart semantics and leverages the analysis and test generation capabilities of the Symbolic PathFinder tool. Polyglot is used as follows: First, the structure of the Statechart model (expressed in Matlab Stateflow or Rational Rhapsody) is translated into a common intermediate representation (IR). The IR is then translated into Java code that represents the structure of the model. The semantics are provided as "pluggable" modules.

WFIRST: Update on the Coronagraph Science Requirements

NASA Astrophysics Data System (ADS)

Douglas, Ewan S.; Cahoy, Kerri; Carlton, Ashley; Macintosh, Bruce; Turnbull, Margaret; Kasdin, Jeremy; WFIRST Coronagraph Science Investigation Teams

2018-01-01

The WFIRST Coronagraph instrument (CGI) will enable direct imaging and low resolution spectroscopy of exoplanets in reflected light and imaging polarimetry of circumstellar disks. The CGI science investigation teams were tasked with developing a set of science requirements which advance our knowledge of exoplanet occurrence and atmospheric composition, as well as the composition and morphology of exozodiacal debris disks, cold Kuiper Belt analogs, and protoplanetary systems. We present the initial content, rationales, validation, and verification plans for the WFIRST CGI, informed by detailed and still-evolving instrument and observatory performance models. We also discuss our approach to the requirements development and management process, including the collection and organization of science inputs, open source approach to managing the requirements database, and the range of models used for requirements validation. These tools can be applied to requirements development processes for other astrophysical space missions, and may ease their management and maintenance. These WFIRST CGI science requirements allow the community to learn about and provide insights and feedback on the expected instrument performance and science return.

Knickpoint finder: A software tool that improves neotectonic analysis

NASA Astrophysics Data System (ADS)

Queiroz, G. L.; Salamuni, E.; Nascimento, E. R.

2015-03-01

This work presents a new software tool for morphometric analysis of drainage networks based on the methods of Hack (1973) and Etchebehere et al. (2004). This tool is applicable to studies of morphotectonics and neotectonics. The software used a digital elevation model (DEM) to identify the relief breakpoints along drainage profiles (knickpoints). The program was coded in Python for use on the ArcGIS platform and is called Knickpoint Finder. A study area was selected to test and evaluate the software's ability to analyze and identify neotectonic morphostructures based on the morphology of the terrain. For an assessment of its validity, we chose an area of the James River basin, which covers most of the Piedmont area of Virginia (USA), which is an area of constant intraplate seismicity and non-orogenic active tectonics and exhibits a relatively homogeneous geodesic surface currently being altered by the seismogenic features of the region. After using the tool in the chosen area, we found that the knickpoint locations are associated with the geologic structures, epicenters of recent earthquakes, and drainages with rectilinear anomalies. The regional analysis demanded the use of a spatial representation of the data after processing using Knickpoint Finder. The results were satisfactory in terms of the correlation of dense areas of knickpoints with active lineaments and the rapidity of the identification of deformed areas. Therefore, this software tool may be considered useful in neotectonic analyses of large areas and may be applied to any area where there is DEM coverage.

SCCmecFinder, a Web-Based Tool for Typing of Staphylococcal Cassette Chromosome mec in Staphylococcus aureus Using Whole-Genome Sequence Data.

PubMed

Kaya, Hülya; Hasman, Henrik; Larsen, Jesper; Stegger, Marc; Johannesen, Thor Bech; Allesøe, Rosa Lundbye; Lemvigh, Camilla Koldbæk; Aarestrup, Frank Møller; Lund, Ole; Larsen, Anders Rhod

2018-01-01

Typing of methicillin-resistant Staphylococcus aureus (MRSA) is important in infection control and surveillance. The current nomenclature of MRSA includes the genetic background of the S. aureus strain determined by multilocus sequence typing (MLST) or equivalent methods like spa typing and typing of the mobile genetic element staphylococcal cassette chromosome mec (SCC mec ), which carries the mecA or mecC gene. Whereas MLST and spa typing are relatively simple, typing of SCC mec is less trivial because of its heterogeneity. Whole-genome sequencing (WGS) provides the essential data for typing of the genetic background and SCC mec , but so far, no bioinformatic tools for SCC mec typing have been available. Here, we report the development and evaluation of SCC mec Finder for characterization of the SCC mec element from S. aureus WGS data. SCC mec Finder is able to identify all SCC mec element types, designated I to XIII, with subtyping of SCC mec types IV (2B) and V (5C2). SCC mec elements are characterized by two different gene prediction approaches to achieve correct annotation, a Basic Local Alignment Search Tool (BLAST)-based approach and a k -mer-based approach. Evaluation of SCC mec Finder by using a diverse collection of clinical isolates ( n = 93) showed a high typeability level of 96.7%, which increased to 98.9% upon modification of the default settings. In conclusion, SCC mec Finder can be an alternative to more laborious SCC mec typing methods and is freely available at https://cge.cbs.dtu.dk/services/SCCmecFinder. IMPORTANCE SCC mec in MRSA is acknowledged to be of importance not only because it contains the mecA or mecC gene but also for staphylococcal adaptation to different environments, e.g., in hospitals, the community, and livestock. Typing of SCC mec by PCR techniques has, because of its heterogeneity, been challenging, and whole-genome sequencing has only partially solved this since no good bioinformatic tools have been available. In this

Laboratory demonstration of a broadband six-level phase mask coronagraph.

PubMed

Patru, Fabien; Baudoz, Pierre; Galicher, Raphaël; Cao, Qing; Wang, Kai; Xing, Lujing; Boussaha, Faouzi; Firminy, Josiane; Bonafous, Marion

2018-04-16

The six-level phase mask (SLPM) can be used in a focal plane as an efficient coronagraph [Opt. Express 22, 1884 (2014)]. It has several advantages: high-contrast imaging in broadband with small inner working angle; easy fabrication at low cost by photolithography and reactive ion etching processes; easy implementation with no need of pupil apodization. We present in this paper the first laboratory results demonstrating the high performance of a SLPM with an unobscured pupil. The on-axis attenuation reaches 2 × 10 -5 at λ = 800 nm and is better than 10 -4 over a 10% spectral bandwidth and better than 10 -3 over a 20% bandwidth. Finally, the detection of a planet can be achieved down to 1 λ/D.

Coronagraphic and low-emissivity astronomical reflector (CLEAR): heat trap design

NASA Astrophysics Data System (ADS)

Siegmund, Walter A.

1998-08-01

The heat trap in a coronagraphic telescope is located at its prime focus and blocks the transmission of radiation from unwanted portions of the solar disk to subsequent optics in the telescope. This reduces light scattered and heat absorbed by these optics. For observations of the corona, the solar disk is completely blocked, whereas for observations of the disk, typically 90% or more of the disk is blocked. The proposed heat trap design is constructed largely of fused silica plates, partially coated with platinum, and cooled with air. It is robust and handles high irradiance, i.e., almost f megawatt/m(superscript 2) at f/3.75, without degrading the image quality of the telescope or contributing significant stray light to the focal surface.

Enceladus Life Finder (ELF): A Proposed Mission to Assess the Habitability of a Plume-Bearing World

NASA Astrophysics Data System (ADS)

Cable, M. L.; Spilker, L. J.; Postberg, F.; Waite, J. H.; Kempf, S.; Clark, K.; Reh, K.; Sherwood, B.; Lunine, J. I.

2017-11-01

Enceladus is a uniquely accessible ocean world due to its plume emanating from the south polar terrain. Here we discuss the Enceladus Life Finder mission concept and its implications for this and other ocean worlds.

Locating Direction Finders in a Generalized Search and Rescue Network

DTIC Science & Technology

1991-03-01

David A . Drake and Alfred B. Marsb. Conv-ersation at NationalI Security Agenc, 29 September 1990. 7. Daskin , Mark S. " A M-admum Fpeced Co-:efing...91 7 19 134 .flT/GORjEnSj9I-M LOCATING DIRECTION FIND’RS IN A GENERALIZED SEARCH AND RESCUE NETWORK THESIS Jean M. Steppe Captain, USAF AFIT/GOR/EN S...91-Mk-7 APPROVED FOR PUBLIC RELI ASE: DISTRIBUTION UNLIMITED. 1191-05734 .. 91.. .7 19 134 i i . nMIGOR4M.S/91-MI LOCATING DIRECTION FINDERS IW A

Astronaut operations requirements document for the White Light Coronagraph experiment s-052 for the Apollo Telescope Mount

NASA Technical Reports Server (NTRS)

Ross, C. L.

1973-01-01

Information necessary for successful performance of the observer's function in the White Light Coronagraph portion of the Apollo Telescope Mount experiments is presented. The pre-flight, in-flight, and post-flight operations required to perform the S-052 experiment are described. A discussion of the scientific objectives of the experiment and a description of the hardware are provided.

The Image-Optimized Corona; Progress on Using Coronagraph Images to Constrain Coronal Magnetic Field Models

NASA Astrophysics Data System (ADS)

Jones, S. I.; Uritsky, V. M.; Davila, J. M.

2017-12-01

In absence of reliable coronal magnetic field measurements, solar physicists have worked for several decades to develop techniques for extrapolating photospheric magnetic field measurements into the solar corona and/or heliosphere. The products of these efforts tend to be very sensitive to variation in the photospheric measurements, such that the uncertainty in the photospheric measurements introduces significant uncertainty into the coronal and heliospheric models needed to predict such things as solar wind speed, IMF polarity at Earth, and CME propagation. Ultimately, the reason for the sensitivity of the model to the boundary conditions is that the model is trying to extact a great deal of information from a relatively small amout of data. We have published in recent years about a new method we are developing to use morphological information gleaned from coronagraph images to constrain models of the global coronal magnetic field. In our approach, we treat the photospheric measurements as approximations and use an optimization algorithm to iteratively find a global coronal model that best matches both the photospheric measurements and quasi-linear features observed in polarization brightness coronagraph images. Here we will summarize the approach we have developed and present recent progress in optimizing PFSS models based on GONG magnetograms and MLSO K-Cor images.

Captain Cook, the Terrestrial Planet Finder and the search for extraterrestrial intelligence

NASA Technical Reports Server (NTRS)

Beichman, C.

2002-01-01

A recently completed NASA study has concluded that a Terrestrial Planet Finder could be launched within a decade to detect terrestrial planets around nearby stars. Such a mission, complemented by projects (Kepler and Eddington) that will provide statistical information on the frequency of Earth-sized planets in the habitable zone, will determine key terms in the Drake equation that describes the number of intelligent civilizations in the Universe.

Echo tracker/range finder for radars and sonars

NASA Technical Reports Server (NTRS)

Constantinides, N. J. (Inventor)

1982-01-01

An echo tracker/range finder or altimeter is described. The pulse repetition frequency (PFR) of a predetermined plurality of transmitted pulses is adjusted so that echo pulses received from a reflecting object are positioned between transmitted pulses and divided their interpulse time interval into two time intervals having a predetermined ratio with respect to each other. The invention described provides a means whereby the arrival time of a plurality of echo pulses is defined as the time at which a composite echo pulse formed of a sum of the individual echo pulses has the highest amplitude. The invention is applicable to radar systems, sonar systems, or any other kind of system in which pulses are transmitted and echoes received therefrom.

Stray-light suppression in a reflecting white-light coronagraph

NASA Technical Reports Server (NTRS)

Romoli, Marco; Weiser, Heinz; Gardner, Larry D.; Kohl, John L.

1993-01-01

An analysis of stray-light suppression in the white-light channel of the Ultraviolet Coronagraph Spectrometer experiment for the Solar and Heliospheric Observatory is reported. The white-light channel consists of a reflecting telescope with external and internal occultation and a polarimeter section. Laboratory tests and analytical methods are used to perform the analysis. The various stray-light contributions are classified in two main categories: the contribution from sunlight that passes directly through the entrance aperture and the contribution of sunlight that is diffracted by the edges of the entrance aperture. Values of the stray-light contributions from various sources and the total stray-light level for observations at heliocentric heights from 1.4 to 5 solar radii are derived. Anticipated signal-to-stray-light ratios are presented together with the effective stray-light rejection by the polarimeter, demonstrating the efficacy of the stray-light suppression design.

Development and recent results from the Subaru coronagraphic extreme adaptive optics system

NASA Astrophysics Data System (ADS)

Jovanovic, N.; Guyon, O.; Martinache, F.; Clergeon, C.; Singh, G.; Kudo, T.; Newman, K.; Kuhn, J.; Serabyn, E.; Norris, B.; Tuthill, P.; Stewart, P.; Huby, E.; Perrin, G.; Lacour, S.; Vievard, S.; Murakami, N.; Fumika, O.; Minowa, Y.; Hayano, Y.; White, J.; Lai, O.; Marchis, F.; Duchene, G.; Kotani, T.; Woillez, J.

2014-07-01

The Subaru Coronagraphic Extreme Adaptive Optics (SCExAO) instrument is one of a handful of extreme adaptive optics systems set to come online in 2014. The extreme adaptive optics correction is realized by a combination of precise wavefront sensing via a non-modulated pyramid wavefront sensor and a 2000 element deformable mirror. This system has recently begun on-sky commissioning and was operated in closed loop for several minutes at a time with a loop speed of 800 Hz, on ~150 modes. Further suppression of quasi-static speckles is possible via a process called "speckle nulling" which can create a dark hole in a portion of the frame allowing for an enhancement in contrast, and has been successfully tested on-sky. In addition to the wavefront correction there are a suite of coronagraphs on board to null out the host star which include the phase induced amplitude apodization (PIAA), the vector vortex, 8 octant phase mask, 4 quadrant phase mask and shaped pupil versions which operate in the NIR (y-K bands). The PIAA and vector vortex will allow for high contrast imaging down to an angular separation of 1 λ/D to be reached; a factor of 3 closer in than other extreme AO systems. Making use of the left over visible light not used by the wavefront sensor is VAMPIRES and FIRST. These modules are based on aperture masking interferometry and allow for sub-diffraction limited imaging with moderate contrasts of ~100-1000:1. Both modules have undergone initial testing on-sky and are set to be fully commissioned by the end of 2014.

Preliminary error budget analysis of the coronagraphic instrument metis for the solar orbiter ESA mission

NASA Astrophysics Data System (ADS)

Da Deppo, Vania; Poletto, Luca; Crescenzio, Giuseppe; Fineschi, Silvano; Antonucci, Ester; Naletto, Giampiero

2017-11-01

METIS, the Multi Element Telescope for Imaging and Spectroscopy, is the solar coronagraph foreseen for the ESA Solar Orbiter mission. METIS is conceived to image the solar corona from a near-Sun orbit in three different spectral bands: in the HeII EUV narrow band at 30.4 nm, in the HI UV narrow band at 121.6 nm, and in the polarized visible light band (590 - 650 nm). It also incorporates the capability of multi-slit spectroscopy of the corona in the UV/EUV range at different heliocentric heights. METIS is an externally occulted coronagraph which adopts an "inverted occulted" configuration. The Inverted external occulter (IEO) is a small circular aperture at the METIS entrance; the Sun-disk light is rejected by a spherical mirror M0 through the same aperture, while the coronal light is collected by two annular mirrors M1-M2 realizing a Gregorian telescope. To allocate the spectroscopic part, one portion of the M2 is covered by a grating (i.e. approximately 1/8 of the solar corona will not be imaged). This paper presents the error budget analysis for this new concept coronagraph configuration, which incorporates 3 different sub-channels: UV and EUV imaging sub-channel, in which the UV and EUV light paths have in common the detector and all of the optical elements but a filter, the polarimetric visible light sub-channel which, after the telescope optics, has a dedicated relay optics and a polarizing unit, and the spectroscopic sub-channel, which shares the filters and the detector with the UV-EUV imaging one, but includes a grating instead of the secondary mirror. The tolerance analysis of such an instrument is quite complex: in fact not only the optical performance for the 3 sub-channels has to be maintained simultaneously, but also the positions of M0 and of the occulters (IEO, internal occulter and Lyot stop), which guarantee the optimal disk light suppression, have to be taken into account as tolerancing parameters. In the aim of assuring the scientific

Kinematic properties of solar coronal mass ejections: Correction for projection effects in spacecraft coronagraph measurements

NASA Astrophysics Data System (ADS)

Howard, T. A.; Nandy, D.; Koepke, A. C.

2008-01-01

One of the main sources of uncertainty in quantifying the kinematic properties of coronal mass ejections (CMEs) using coronagraphs is the fact that coronagraph images are projected into the sky plane, resulting in measurements which can differ significantly from their actual values. By identifying solar surface source regions of CMEs using X-ray and Hα flare and disappearing filament data, and through considerations of CME trajectories in three-dimensional (3-D) geometry, we have devised a methodology to correct for the projection effect. We outline this method here. The methodology was automated and applied to over 10,000 CMEs in the Coordinated Data Analysis Workshop (CDAW) (SOHO Large Angle Spectroscopic Coronagraph) catalog spanning 1996-2005, in which we could associate 1961 CMEs with an appropriate surface event. In the latter subset, deprojected speeds, accelerations, and launch angles were determined to study CME kinematics. Our analysis of this subset of events reconfirms some important trends, notably that previously uncovered solar cycle variation of CME properties are preserved, CMEs with greater width have higher speeds, and slower CMEs tend to accelerate while faster CMEs tend to decelerate. This points out that statistical trends in CME properties, recovered from plane-of-sky measurements, may be preserved even in the face of more sophisticated 3-D measurements from spacecrafts such as STEREO, if CME trajectories are predominantly radial. However, our results also show that the magnitude of corrected measurements can differ significantly from the projected plane-of-sky measurements on a case-by-case basis and that acceleration is more sensitive to the deprojection process than speed. Average corrected speed and acceleration tend to be a factor of 1.7 and 4.4 higher than their projected values, with mean corrected speed and acceleration magnitudes being on the order of 1000 km/s and 50 m/s2, respectively. We conclude that while using the plane

A view finder control system for an earth observation satellite

NASA Astrophysics Data System (ADS)

Steyn, H.

2004-11-01

A real time TV view finder is used on-board a low earth orbiting (LEO) satellite to manually select targets for imaging from a ground station within the communication footprint of the satellite. The attitude control system on the satellite is used to steer the satellite using commands from the groundstation and a television camera onboard the satellite will then downlink a television signal in real time to a monitor screen in the ground station. The operator in the feedback loop will be able to manually steer the boresight of the satellite's main imager towards interested target areas e.g. to avoid clouds or correct for any attitude pointing errors. Due to a substantial delay (in the order of a second) in the view finding feedback loop and the narrow field of view of the main imager, the operator has to be assisted by the onboard attitude control system to stabilise and track the target area visible on the monitor screen. This paper will present the extended Kalman filter used to estimate the satellite's attitude angles using quaternions and the bias vector component of the 3-axis inertial rate sensors (gyros). Absolute attitude sensors (i.e. sun, horizon and magnetic) are used to supply the measurement vectors to correct the filter states during the view finder manoeuvres. The target tracking and rate steering reaction wheel controllers to accurately point and stabilise the satellite will be presented. The reference generator for the satellite to target attitude and rate vectors as used by the reaction wheel controllers will be derived.

Terrestrial Planet Finder Interferometer: Architecture, Mission Design and Technology Development

NASA Technical Reports Server (NTRS)

Henry, Curt; Lay, Oliver; Aung, MiMi; Gunter, Steven M.; Dubovitsky, Serge; Blackwood, Gary

2004-01-01

This overview paper is a progress report about the system design and technology development of two interferometer concepts studied for the Terrestrial Planet Finder (TPF) project. The two concepts are a structurally-connected interferometer (SCI) intended to fulfill minimum TPF science goals and a formation-flying interferometer (FFI) intended to fulfill full science goals. Described are major trades, analyses, and technology experiments completed. Near term plans are also described. This paper covers progress since August 2003 and serves as an update to a paper presented at that month's SPIE conference, 'Techniques and Instrumentation for Detection of Exoplanets.

Terrestrial Planet Finder Interferometer Science Working Group Report

NASA Technical Reports Server (NTRS)

Lawson, Peter R. (Editor); Lay, Oliver P. (Editor); Johnston, Kenneth J. (Editor); Beichman, Charles A. (Editor)

2007-01-01

Over the past two years, the focus of the project for the interferometric version of the Terrestrial Planet Finder(TPF-I) has been on the development of the scientific rational for the mission, the assessment of TPF-I architectures, the laboratory demonstration of key technologies, and the development of a detailed technology roadmap. The Science Working Group (SWG), in conjunction with European colleagues working on the European Space Agency's (ESA's) Darwin project, has reaffirmed the goals of TPF-I as part of a broad vision for the detection and characterization of Earth-like planets orbiting nearby stars and for the search for life on those planets. The SWG also helped to assess the performance of different interferometric configurations for TPF-I/Darwin. Building on earlier SWG reports, this document restates the scientific case for TPF-I, assesses suitable target stars and relevant wavelengths for observation, discusses dramatic new capabilities for general astrophysical observations, and summarizes how Spitzer has improved our knowledge of the incidence of zodiacal emission on the search for planets. This document discusses in some detail on laboratory advances in interferometric nulling and formation flying. Laboratory experiments have now achieved stable narrow- and broad-band nulling the levels of 10-6 and 2.0x10-5, respectively. A testbed has demonstrated formation flying using two realistic spacecraft mockups. With a suitably funded program of technology development, as summarized herein and described in more detail in the Technology Plan for the Terrestrial Planet Finder Interferometer (2005), the National Aeronautics and Space Administration (NASA) and ESA would be able to start within the coming decade a full-scale TPF-I/Darwin mission capable of finding Earths orbiting more than 150 nearby stars, or a scaled back interferometer capable of studying more than 30 stars. Finding evidence for life on just one of those planets would revolutionize our

Laser Range and Bearing Finder with No Moving Parts

NASA Technical Reports Server (NTRS)

Bryan, Thomas C.; Howard, Richard T.; Book, Michael L.

2007-01-01

A proposed laser-based instrument would quickly measure the approximate distance and approximate direction to the closest target within its field of view. The instrument would not contain any moving parts and its mode of operation would not entail scanning over of its field of view. Typically, the instrument would be used to locate a target at a distance on the order of meters to kilometers. The instrument would be best suited for use in an uncluttered setting in which the target is the only or, at worst, the closest object in the vicinity; for example, it could be used aboard an aircraft to detect and track another aircraft flying nearby. The proposed instrument would include a conventional time-of-flight or echo-phase-shift laser range finder, but unlike most other range finders, this one would not generate a narrow cylindrical laser beam; instead, it would generate a conical laser beam spanning the field of view. The instrument would also include a quadrant detector, optics to focus the light returning from the target onto the quadrant detector, and circuitry to synchronize the acquisition of the quadrant-detector output with the arrival of laser light returning from the nearest target. A quadrant detector constantly gathers information from the entire field of view, without scanning; its output is a direct measure of the position of the target-return light spot on the focal plane and is thus a measure of the direction to the target. The instrument should be able to operate at a repetition rate high enough to enable it to track a rapidly moving target. Of course, a target that is not sufficiently reflective could not be located by this instrument. Preferably, retroreflectors should be attached to the target to make it sufficiently reflective.

Subaru Near Infrared Coronagraphic Images of T Tauri

NASA Astrophysics Data System (ADS)

Mayama, Satoshi; Tamura, Motohide; Hayashi, Masahiko; Itoh, Yoichi; Fukagawa, Misato; Suto, Hiroshi; Ishii, Miki; Murakawa, Koji; Oasa, Yumiko; Hayashi, Saeko S.; Yamashita, Takuya; Morino, Junichi; Oya, Shin; Naoi, Takahiro; Pyo, Tae-Soo; Nishikawa, Takayuki; Kudo, Tomoyuki; Usuda, Tomonori; Ando, Hiroyasu; Miyama, Shoken M.; Kaifu, Norio

2006-04-01

High angular resolution near-infrared (JHK) adaptive optics images of T Tau were obtained with the infrared camera Coronagraphic Imager with Adaptive Optics (CIAO) mounted on the 8.2m Subaru Telescope in 2002 and 2004. The images resolve a complex circumstellar structure around a multiple system. We resolved T Tau Sa and Sb as well as T Tau N and S. The estimated orbit of T Tau Sb indicates that it is probably bound to T Tau Sa. The K band flux of T Tau S decreased by ˜ 1.7 Jy in 2002 November compared with that in 2001 mainly because T Tau Sa became fainter. The arc-like ridge detected in our near-infrared images is consistent with what is seen at visible wavelengths, supporting the interpretation in previous studies that the arc is part of the cavity wall seen relatively pole-on. Halo emission is detected out to ˜2''from T Tau N. This may be light scattered off the common envelope surrounding the T Tauri multiple system.

Optical measurements of the mirrors and of the interferential filter of the Metis coronagraph on Solar Orbiter

NASA Astrophysics Data System (ADS)

Sandri, P.; Sarra, P.; Radaelli, P.; Morea, D.; Melich, R.; Berlicki, A.; Antonucci, E.; Castronuovo, M. M.; Fineschi, S.; Naletto, G.; Nicolini, G.; Romoli, M.

2017-08-01

The paper describes the wavefront error measurements of the concave ellipsoidal mirrors M1 and M2, of the concave spherical mirror M0 and of the flat interferential filter IF of the Metis coronagraph. Metis is an inverted occultation coronagraph on board of the ESA Solar Orbiter mission providing a broad-band imaging of the full corona in linearly polarized visible-light (580 - 640 nm) and a narrow-band imaging of the full corona in the ultraviolet Lyman α (121.6 nm). Metis will observe the solar outer atmosphere from a close distance to the Sun as 0.28 A.U. and from up to 35deg out-of-ecliptic. The measurements of wavefront error of the mirrors and of the interferential filter of Metis have been performed in a ISO5 clean room both at component level and at assembly level minimizing, during the integration, the stress introduced by the mechanical hardware. The wavefront error measurements have been performed with a digital interferometer for mirrors M0, M1 and M2 and with a Shack-Hartmann wavefront sensor for the interferential filter.

Use of an online portal to facilitate clinical trial recruitment: a preliminary analysis of Fox Trial Finder.

PubMed

Rocker, Charlotte; Cappelletti, Lily; Marshall, Claudia; Meunier, Claire C; Brooks, Deborah W; Sherer, Todd; Chowdhury, Sohini

2015-01-01

As in other therapeutic areas, clinical studies in Parkinson's disease (PD) face significant recruitment challenges. However, qualitative surveys suggest that individuals with PD are willing to participate in clinical research. The Michael J. Fox Foundation therefore established Fox Trial Finder in 2011 to facilitate connection between PD research teams and volunteers. Characterize the research volunteers (with and without PD) registered on Fox Trial Finder as of June 2014, and the published, recruiting studies to identify trends and highlight gaps between research requirements and available volunteers. Profiles of volunteers with and without PD were analyzed to explore trends in geography, demographics, family history and, for those volunteers with PD, disease progression and treatment history. Clinical study profiles were analyzed to determine study type, phase, sponsor, focus, location and eligibility criteria. The analysis focused on volunteers and studies based in the United States. The database contained 26,261 US-based volunteers, including 19,243 volunteers (73%) with PD and 7,018 (27%) controls without PD. The average time since diagnosis for PD volunteers was 5.7 years and the average age at diagnosis was 58 years. Control volunteers were more likely than volunteers with PD to be female (67% vs. 35%) and to have a family history of PD (49% vs. 12%). Fox Trial Finder's registration history to date demonstrates the high level of willingness among individuals affected by PD to participate in clinical research and provide a significant amount of personal health information to facilitate that participation.

Spatially Resolved Spectroscopy and Coronagraphic Imaging of the TW Hydrae Circumstellar Disk

NASA Astrophysics Data System (ADS)

Roberge, Aki; Weinberger, Alycia J.; Malumuth, Eliot M.

2005-04-01

We present the first spatially resolved spectrum of scattered light from the TW Hydrae protoplanetary disk. This nearly face-on disk is optically thick, surrounding a classical T Tauri star in the nearby 10 Myr old TW Hya association. The spectrum was taken with the Hubble Space Telescope (HST) STIS CCD, providing resolution R~360 over the wavelength range 5250-10300 Å. Spatially resolved spectroscopy of circumstellar disks is difficult because of the high contrast ratio between the bright star and faint disk. Our novel observations provide optical spectra of scattered light from the disk between 40 and 155 AU from the star. The scattered light has the same color as the star (gray scattering) at all radii except the innermost region. This likely indicates that the scattering dust grains are larger than about 1 μm all the way out to large radii. From the spectroscopic data, we also obtained radial profiles of the integrated disk brightness at two position angles, over almost the same region as previously observed in HST WFPC2 and NICMOS coronagraphic images (35 to 173 AU from the star). The profiles have the same shape as the earlier ones, but show a small azimuthal asymmetry in the disk not previously noted. Our STIS broadband coronagraphic images of TW Hya confirm the reality of this asymmetry, and show that the disk surface brightness inside 140 AU has a sinusoidal dependence on azimuthal angle. The maximum brightness occurs at a position angle of 233.6d+/-5.7d east of north. This might be caused by the combination of forward scattering and an increase in inclination in the inner region of the disk, suggesting that the TW Hya disk has a warp like that seen in the β Pictoris debris disk.

Electric Field Reconstruction in the Image Plane of a High-Contrast Coronagraph Using a Set of Pinholes around the Lyot Plane

NASA Technical Reports Server (NTRS)

Giveona, Amir; Shaklan, Stuart; Kern, Brian; Noecker, Charley; Kendrick, Steve; Wallace, Kent

2012-01-01

In a setup similar to the self coherent camera, we have added a set of pinholes in the diffraction ring of the Lyot plane in a high-contrast stellar Lyot coronagraph. We describe a novel complex electric field reconstruction from image plane intensity measurements consisting of light in the coronagraph's dark hole interfering with light from the pinholes. The image plane field is modified by letting light through one pinhole at a time. In addition to estimation of the field at the science camera, this method allows for self-calibration of the probes by letting light through the pinholes in various permutations while blocking the main Lyot opening. We present results of estimation and calibration from the High Contrast Imaging Testbed along with a comparison to the pair-wise deformable mirror diversity based estimation technique. Tests are carried out in narrow-band light and over a composite 10% bandpass.

APODIZED PUPIL LYOT CORONAGRAPHS FOR ARBITRARY APERTURES. IV. REDUCED INNER WORKING ANGLE AND INCREASED ROBUSTNESS TO LOW-ORDER ABERRATIONS

DOE Office of Scientific and Technical Information (OSTI.GOV)

N'Diaye, Mamadou; Pueyo, Laurent; Soummer, Rémi, E-mail: mamadou@stsci.edu

The Apodized Pupil Lyot Coronagraph (APLC) is a diffraction suppression system installed in the recently deployed instruments Palomar/P1640, Gemini/GPI, and VLT/SPHERE to allow direct imaging and spectroscopy of circumstellar environments. Using a prolate apodization, the current implementations offer raw contrasts down to 10{sup –7} at 0.2 arcsec from a star over a wide bandpass (20%), in the presence of central obstruction and struts, enabling the study of young or massive gaseous planets. Observations of older or lighter companions at smaller separations would require improvements in terms of the inner working angle (IWA) and contrast, but the methods originally used for thesemore » designs were not able to fully explore the parameter space. We propose a novel approach to improve the APLC performance. Our method relies on the linear properties of the coronagraphic electric field with the apodization at any wavelength to develop numerical solutions producing coronagraphic star images with high-contrast region in broadband light. We explore the parameter space by considering different aperture geometries, contrast levels, dark-zone sizes, bandpasses, and focal plane mask sizes. We present an application of these solutions to the case of Gemini/GPI with a design delivering a 10{sup –8} raw contrast at 0.19 arcsec and offering a significantly reduced sensitivity to low-order aberrations compared to the current implementation. Optimal solutions have also been found to reach 10{sup –10} contrast in broadband light regardless of the aperture shape, with effective IWA in the 2-3.5 λ/D range, therefore making the APLC a suitable option for the future exoplanet direct imagers on the ground or in space.« less

CpG PatternFinder: a Windows-based utility program for easy and rapid identification of the CpG methylation status of DNA.

PubMed

Xu, Yi-Hua; Manoharan, Herbert T; Pitot, Henry C

2007-09-01

The bisulfite genomic sequencing technique is one of the most widely used techniques to study sequence-specific DNA methylation because of its unambiguous ability to reveal DNA methylation status to the order of a single nucleotide. One characteristic feature of the bisulfite genomic sequencing technique is that a number of sample sequence files will be produced from a single DNA sample. The PCR products of bisulfite-treated DNA samples cannot be sequenced directly because they are heterogeneous in nature; therefore they should be cloned into suitable plasmids and then sequenced. This procedure generates an enormous number of sample DNA sequence files as well as adding extra bases belonging to the plasmids to the sequence, which will cause problems in the final sequence comparison. Finding the methylation status for each CpG in each sample sequence is not an easy job. As a result CpG PatternFinder was developed for this purpose. The main functions of the CpG PatternFinder are: (i) to analyze the reference sequence to obtain CpG and non-CpG-C residue position information. (ii) To tailor sample sequence files (delete insertions and mark deletions from the sample sequence files) based on a configuration of ClustalW multiple alignment. (iii) To align sample sequence files with a reference file to obtain bisulfite conversion efficiency and CpG methylation status. And, (iv) to produce graphics, highlighted aligned sequence text and a summary report which can be easily exported to Microsoft Office suite. CpG PatternFinder is designed to operate cooperatively with BioEdit, a freeware on the internet. It can handle up to 100 files of sample DNA sequences simultaneously, and the total CpG pattern analysis process can be finished in minutes. CpG PatternFinder is an ideal software tool for DNA methylation studies to determine the differential methylation pattern in a large number of individuals in a population. Previously we developed the CpG Analyzer program; CpG PatternFinder

StrengthsFinder Signature Themes of Talent in Doctor of Pharmacy Students in Five Midwestern Pharmacy Schools.

PubMed

Janke, Kristin K; Farris, Karen B; Kelley, Katherine A; Marshall, Vincent D; Plake, Kimberly S; Scott, Steven A; Sorensen, Todd D; Yee, Gary C

2015-05-25

To describe student pharmacists' Signature Themes from the Clifton StrengthsFinder across 5 Midwestern pharmacy institutions and to compare themes by gender, institution, and undergraduate population. Student pharmacists completed the StrengthsFinder 2.0 assessment and received their top 5 Signature Themes. Themes were organized and examined by domains (Executing, Influencing, Relationship Building, Strategic Thinking). The distribution of the themes was compared between student pharmacists and undergraduates and themes and domains were compared by institution and gender. Although results varied by institution, the top 5 themes among the 1244 of 1250 students (99.5%) who completed the assessment were: Achiever, Harmony, Learner, Responsibility, and Empathy. Female student pharmacists had more themes in Executing and Relationship Building, while males had more themes in Influencing and Strategic Thinking. Pharmacy students exhibit more Executing domain talents and fewer Influencing domain talents compared with undergraduates. Signature Themes were consistent among student pharmacists across 5 Midwestern colleges of pharmacy.

Forecast-based Integrated Flood Detection System for Emergency Response and Disaster Risk Reduction (Flood-FINDER)

NASA Astrophysics Data System (ADS)

Arcorace, Mauro; Silvestro, Francesco; Rudari, Roberto; Boni, Giorgio; Dell'Oro, Luca; Bjorgo, Einar

2016-04-01

Most flood prone areas in the globe are mainly located in developing countries where making communities more flood resilient is a priority. Despite different flood forecasting initiatives are now available from academia and research centers, what is often missing is the connection between the timely hazard detection and the community response to warnings. In order to bridge the gap between science and decision makers, UN agencies play a key role on the dissemination of information in the field and on capacity-building to local governments. In this context, having a reliable global early warning system in the UN would concretely improve existing in house capacities for Humanitarian Response and the Disaster Risk Reduction. For those reasons, UNITAR-UNOSAT has developed together with USGS and CIMA Foundation a Global Flood EWS called "Flood-FINDER". The Flood-FINDER system is a modelling chain which includes meteorological, hydrological and hydraulic models that are accurately linked to enable the production of warnings and forecast inundation scenarios up to three weeks in advance. The system is forced with global satellite derived precipitation products and Numerical Weather Prediction outputs. The modelling chain is based on the "Continuum" hydrological model and risk assessments produced for GAR2015. In combination with existing hydraulically reconditioned SRTM data and 1D hydraulic models, flood scenarios are derived at multiple scales and resolutions. Climate and flood data are shared through a Web GIS integrated platform. First validation of the modelling chain has been conducted through a flood hindcasting test case, over the Chao Phraya river basin in Thailand, using multi temporal satellite-based analysis derived for the exceptional flood event of 2011. In terms of humanitarian relief operations, the EO-based services of flood mapping in rush mode generally suffer from delays caused by the time required for their activation, programming, acquisitions and

In-Flight Simulator for IFR Training

NASA Technical Reports Server (NTRS)

Parker, L. C.

1986-01-01

Computer-controlled unit feeds navigation signals to airplane instruments. Electronic training system allows students to learn to fly according to instrument flight rules (IFR) in uncrowded airspace. New system self-contained IFR simulator carried aboard training plane. Generates signals and commands for standard instruments on airplane, including navigational receiver, distance-measuring equipment, automatic direction finder, a marker-beacon receiver, altimeter, airspeed indicator, and heading indicator.

Statistical study of coronal mass ejection source locations: Understanding CMEs viewed in coronagraphs

NASA Astrophysics Data System (ADS)

Wang, Yuming; Chen, Caixia; Gui, Bin; Shen, Chenglong; Ye, Pinzhong; Wang, S.

2011-04-01

How to properly understand coronal mass ejections (CMEs) viewed in white light coronagraphs is crucial to many relative researches in solar and space physics. The issue is now particularly addressed in this paper through studying the source locations of all the 1078 Large Angle and Spectrometric Coronagraph (LASCO) CMEs listed in Coordinated Data Analysis Workshop (CDAW) CME catalog during 1997-1998 and their correlation with CMEs' apparent parameters. By manually checking LASCO and Extreme Ultraviolet Imaging Telescope (EIT) movies of these CMEs, we find that, except 231 CMEs whose source locations cannot be identified due to poor data, there are 288 CMEs with location identified on the frontside solar disk, 234 CMEs appearing above solar limb, and 325 CMEs without evident eruptive signatures in the field of view of EIT. On the basis of the statistical results of CMEs' source locations, there are four physical issues: (1) the missing rate of CMEs by SOHO LASCO and EIT, (2) the mass of CMEs, (3) the causes of halo CMEs, and (4) the deflections of CMEs in the corona, are exhaustively analyzed. It is found that (1) about 32% frontside CMEs cannot be recognized by SOHO, (2) the brightness of a CME at any heliocentric distance is roughly positively correlated with its speed, and the CME mass derived from the brightness is probably overestimated, (3) both projection effect and violent eruption are the major causes of halo CMEs, and especially for limb halo CMEs the latter is the primary one, and (4) most CMEs deflected toward equator near the solar minimum; these deflections can be classified into three types: the asymmetrical expansion, the nonradial ejection, and the deflected propagation.

Small image laser range finder for planetary rover

NASA Technical Reports Server (NTRS)

Wakabayashi, Yasufumi; Honda, Masahisa; Adachi, Tadashi; Iijima, Takahiko

1994-01-01

A variety of technical subjects need to be solved before planetary rover navigation could be a part of future missions. The sensors which will perceive terrain environment around the rover will require critical development efforts. The image laser range finder (ILRF) discussed here is one of the candidate sensors because of its advantage in providing range data required for its navigation. The authors developed a new compact-sized ILRF which is a quarter of the size of conventional ones. Instead of the current two directional scanning system which is comprised of nodding and polygon mirrors, the new ILRF is equipped with the new concept of a direct polygon mirror driving system, which successfully made its size compact to accommodate the design requirements. The paper reports on the design concept and preliminary technical specifications established in the current development phase.

PubDNA Finder: a web database linking full-text articles to sequences of nucleic acids.

PubMed

García-Remesal, Miguel; Cuevas, Alejandro; Pérez-Rey, David; Martín, Luis; Anguita, Alberto; de la Iglesia, Diana; de la Calle, Guillermo; Crespo, José; Maojo, Víctor

2010-11-01

PubDNA Finder is an online repository that we have created to link PubMed Central manuscripts to the sequences of nucleic acids appearing in them. It extends the search capabilities provided by PubMed Central by enabling researchers to perform advanced searches involving sequences of nucleic acids. This includes, among other features (i) searching for papers mentioning one or more specific sequences of nucleic acids and (ii) retrieving the genetic sequences appearing in different articles. These additional query capabilities are provided by a searchable index that we created by using the full text of the 176 672 papers available at PubMed Central at the time of writing and the sequences of nucleic acids appearing in them. To automatically extract the genetic sequences occurring in each paper, we used an original method we have developed. The database is updated monthly by automatically connecting to the PubMed Central FTP site to retrieve and index new manuscripts. Users can query the database via the web interface provided. PubDNA Finder can be freely accessed at http://servet.dia.fi.upm.es:8080/pubdnafinder

Surging Seas Risk Finder: A Tool for Local-Scale Flood Risk Assessments in Coastal Cities

NASA Astrophysics Data System (ADS)

Kulp, S. A.; Strauss, B.

2015-12-01

Local decision makers in coastal cities require accurate, accessible, and thorough assessments of flood exposure risk within their individual municipality, in their efforts to mitigate against damage due to future sea level rise. To fill this need, we have developed Climate Central's Surging Seas Risk Finder, an interactive data toolkit which presents our sea level rise and storm surge analysis for every coastal town, city, county, and state within the USA. Using this tool, policy makers can easily zoom in on their local place of interest to receive a detailed flood risk assessment, which synthesizes a wide range of features including total population, socially vulnerable population, housing, property value, road miles, power plants, schools, hospitals, and many other critical facilities. Risk Finder can also be used to identify specific points of interest in danger of exposure at different flood levels. Additionally, this tool provides localized storm surge probabilities and sea level rise projections at tidal gauges along the coast, so that users can quickly understand the risk of flooding in their area over the coming decades.

Diffraction modeling of finite subband EFC probing on dark hole contrast with WFIRST-CGI shaped pupil coronagraph

NASA Astrophysics Data System (ADS)

Zhou, Hanying; Krist, John; Nemati, Bijan

2016-08-01

Current coronagraph instrument design (CGI), as a part of a proposed NASA WFIRST (Wide-Field InfraRed Survey Telescope) mission, allocates two subband filters per full science band in order to contain system complexity and cost. We present our detailed investigation results on the adequacy of such limited number of finite subband filters in achieving full band dark hole contrast with shaped pupil coronagraph. The study is based on diffraction propagation modeling with realistic WFIRST optics, where each subband's complex field estimation is obtained, using Electric Field Conjugation (EFC) wavefront sensing / control algorithm, from pairwise pupil plane deformable mirror (DM) probing and image plane intensity averaging of the resulting fields of multiple (subband) wavelengths. Multiple subband choices and probing and control strategies are explored, including standard subband probing; mixed wavelength and/or weighted Jacobian matrix; subband probing with intensity subtraction; and extended subband probing with intensity subtraction. Overall, the investigation shows that the achievable contrast with limited number of finite subband EFC probing is about 2 2.5x worse than the designed post-EFC contrast for current SPC design. The result suggests that for future shaped pupil design, slightly larger over intended full bandwidth should be considered if it will be used with limited subbands for probing.

SiC/Mg multilayer coatings for SCORE coronagraph: long term stability analysis

NASA Astrophysics Data System (ADS)

Pelizzo, Maria Guglielmina; Fineschi, Silvano; Zuppella, Paola; Corso, Alain Jody; Windt, David L.; Nicolosi, Piergiorgio

2011-10-01

SiC/Mg multilayers have been used as coatings of the Sounding-rocket CORonagraphic Experiment (SCORE) telescope mirrors launched during the NASA HERSCHEL program. This materials couple has been largely studied by researchers since it provides higher performances than a standard Mo/Si multilayer; the SCORE mirrors show in fact a peak reflectance of around 40% at HeII 30.4 nm. Nevertheless, long term stability of this coating is an open problem. A study on the aging and stability of this multilayer has been carried on. SiC/Mg multilayer samples characterized by different structural parameters have been deposited. They have been measured just after deposition and four years later to verify degradation based on natural aging. Experimental results and analysis are presented.

PathogenFinder--distinguishing friend from foe using bacterial whole genome sequence data.

PubMed

Cosentino, Salvatore; Voldby Larsen, Mette; Møller Aarestrup, Frank; Lund, Ole

2013-01-01

Although the majority of bacteria are harmless or even beneficial to their host, others are highly virulent and can cause serious diseases, and even death. Due to the constantly decreasing cost of high-throughput sequencing there are now many completely sequenced genomes available from both human pathogenic and innocuous strains. The data can be used to identify gene families that correlate with pathogenicity and to develop tools to predict the pathogenicity of newly sequenced strains, investigations that previously were mainly done by means of more expensive and time consuming experimental approaches. We describe PathogenFinder (http://cge.cbs.dtu.dk/services/PathogenFinder/), a web-server for the prediction of bacterial pathogenicity by analysing the input proteome, genome, or raw reads provided by the user. The method relies on groups of proteins, created without regard to their annotated function or known involvement in pathogenicity. The method has been built to work with all taxonomic groups of bacteria and using the entire training-set, achieved an accuracy of 88.6% on an independent test-set, by correctly classifying 398 out of 449 completely sequenced bacteria. The approach here proposed is not biased on sets of genes known to be associated with pathogenicity, thus the approach could aid the discovery of novel pathogenicity factors. Furthermore the pathogenicity prediction web-server could be used to isolate the potential pathogenic features of both known and unknown strains.

In campus location finder using mobile application services

NASA Astrophysics Data System (ADS)

Fai, Low Weng; Audah, Lukman

2017-09-01

Navigation services become very common in this era, the application include Google Map, Waze and etc. Although navigation application contains the main routing service in open area but not all of the buildings are recorded in the database. In this project, an application is made for the indoor and outdoor navigation in Universiti Tun Hussein Onn Malaysia (UTHM). It is used to help outsider and new incoming students by navigating them from their current location to destination using mobile application name "U Finder". Thunkable website has been used to build the application for outdoor and indoor navigation. Outdoor navigation is linked to the Google Map and indoor navigation is using the QR code for positioning and routing picture for navigation. The outdoor navigation can route user to the main faculties in UTHM and indoor navigation is only done for the G1 building in UTHM.

Terrestrial Planet Finder: Coda to 10 Years of Technology Development

NASA Technical Reports Server (NTRS)

Lawson, Peter R.

2009-01-01

The Terrestrial Planet Finder (TPF) was proposed as a mission concept to the 2000 Decadal Survey, and received a very high ranking amongst the major initiatives that were then reviewed. As proposed, it was a formation flying array of four 3-m class mid-infrared telescopes, linked together as an interferometer. Its science goal was to survey 150 nearby stars for the presence of Earth-like planets, to detect signs of life or habitability, and to enable revolutionary advances in high angular resolution astrophysics. The Decadal Survey Committee recommended that $200M be invested to advance TPF technology development in the Decade of 2000-2010. This paper presents the results of NASA's investment.

Demonstrating Broadband Billion-to-One Contrast with the Visible Nulling Coronagraph

NASA Technical Reports Server (NTRS)

Hicks, Brian A.; Lyon, Richard G.; Petrone, Peter, III; Miller, Ian J.; Bolcar, Matthew R.; Clampin, Mark; Helmbrecht, Michael A.; Mallik, Udayan

2015-01-01

The key to broadband operation of the Visible Nulling Coronagraph (VNC) is achieving a condition of quasi- achromatic destructive interference between combined beams. Here we present efforts towards meeting this goal using Fresnel rhombs in each interferometric arm as orthogonally aligned half wave phase retarders. The milestone goal of the demonstration is to achieve 1 × 10-9 contrast at 2/D over a 40 nm bandpass centered at 633 nm. Rhombs have been designed and fabricated, and a multi-step approach to alignment using coarse positioners for each rhomb and pair has been developed to get within range of piezo stages used for fine positioning. The previously demonstrated narrowband VNC sensing and control approach that uses a segmented deformable mirror is being adapted to broadband to include fine positioning of the piezo-mounted rhombs, all demonstrated in a low-pressure environment.

IsoCleft Finder – a web-based tool for the detection and analysis of protein binding-site geometric and chemical similarities

PubMed Central

Najmanovich, Rafael

2013-01-01

IsoCleft Finder is a web-based tool for the detection of local geometric and chemical similarities between potential small-molecule binding cavities and a non-redundant dataset of ligand-bound known small-molecule binding-sites. The non-redundant dataset developed as part of this study is composed of 7339 entries representing unique Pfam/PDB-ligand (hetero group code) combinations with known levels of cognate ligand similarity. The query cavity can be uploaded by the user or detected automatically by the system using existing PDB entries as well as user-provided structures in PDB format. In all cases, the user can refine the definition of the cavity interactively via a browser-based Jmol 3D molecular visualization interface. Furthermore, users can restrict the search to a subset of the dataset using a cognate-similarity threshold. Local structural similarities are detected using the IsoCleft software and ranked according to two criteria (number of atoms in common and Tanimoto score of local structural similarity) and the associated Z-score and p-value measures of statistical significance. The results, including predicted ligands, target proteins, similarity scores, number of atoms in common, etc., are shown in a powerful interactive graphical interface. This interface permits the visualization of target ligands superimposed on the query cavity and additionally provides a table of pairwise ligand topological similarities. Similarities between top scoring ligands serve as an additional tool to judge the quality of the results obtained. We present several examples where IsoCleft Finder provides useful functional information. IsoCleft Finder results are complementary to existing approaches for the prediction of protein function from structure, rational drug design and x-ray crystallography. IsoCleft Finder can be found at: http://bcb.med.usherbrooke.ca/isocleftfinder. PMID:24555058

Teenage Pregnancy: An Intensive and Critical Problem in Search of a Solution. Student Fact Finder Leaflet.

ERIC Educational Resources Information Center

Glover-Smith, Alma

This document presents materials from a course designed to teach adolescents about teenage pregnancy and parenting. The materials are organized into nine modules, each of which contains instructions on how to use the module; a pre- and post-test on the information presented in the module; a fact finder leaflet of information; and relevant…

Electric Field Reconstruction in the Image Plane of a High-Contrast Coronagraph Using a Set of Pinholes Around the Lyot Plane

NASA Technical Reports Server (NTRS)

Giveon, Amir; Kern, Brian; Shaklan, Stuart; Wallace, Kent; Noecker, Charley

2012-01-01

The pair-wise estimation has been used now on various testbeds with different coronagraphs with the best contrast results to date. Pinholes estimate has been implemented and ready to be tested in closed loop correction. Pinholes estimate offers an independent method. We hope to improve the calibration process to gain better estimates.

NEOCE: a new external occulting coronagraph experiment for ultimate observations of the chromosphere, corona and interface

NASA Astrophysics Data System (ADS)

Damé, Luc; Fineschi, Silvano; Kuzin, Sergey; Von Fay-Siebenburgen, Erdélyi Robert

Several ground facilities and space missions are currently dedicated to the study of the Sun at high resolution and of the solar corona in particular. However, and despite significant progress with the advent of space missions and UV, EUV and XUV direct observations of the hot chromosphere and million-degrees coronal plasma, much is yet to be achieved in the understanding of these high temperatures, fine dynamic dissipative structures and of the coronal heating in general. Recent missions have shown the definite role of a wide range of waves and of the magnetic field deep in the inner corona, at the chromosphere-corona interface, where dramatic and physically fundamental changes occur. The dynamics of the chromosphere and corona is controlled and governed by the emerging magnetic field. Accordingly, the direct measurement of the chromospheric and coronal magnetic fields is of prime importance. The solar corona consists of many localised loop-like structures or threads with the plasmas brightening and fading independently. The plasma evolution in each thread is believed to be related to the formation of filaments, each one being dynamic, in a non-equilibrium state. The mechanism sustaining this dynamics, oscillations or waves (Alfvén or other magneto-plasma waves), requires both very high-cadence, multi-spectral observations, and high resolution and coronal magnetometry. This is foreseen in the future Space Mission NEOCE (New External Occulting Coronagraph Experiment), the ultimate new generation high-resolution coronagraphic heliospheric mission, to be proposed for ESA M4. NEOCE, an evolution of the HiRISE mission, is ideally placed at the L5 Lagrangian point (for a better follow-up of CMEs), and provides FUV imaging and spectro-imaging, EUV and XUV imaging and spectroscopy, and ultimate coronagraphy by a remote external occulter (two satellites in formation flying 375 m apart minimizing scattered light) allowing to characterize temperature, densities and

Design, development and validation of a new laryngo-pharyngeal endoscopic esthesiometer and range-finder based on the assessment of air-pulse variability determinants.

PubMed

Giraldo-Cadavid, Luis F; Agudelo-Otalora, Luis Mauricio; Burguete, Javier; Arbulu, Mario; Moscoso, William Daniel; Martínez, Fabio; Ortiz, Andrés Felipe; Diaz, Juan; Pantoja, Jaime A; Rueda-Arango, Andrés Felipe; Fernández, Secundino

2016-05-10

Laryngo-pharyngeal mechano-sensitivity (LPMS) is involved in dysphagia, sleep apnea, stroke, irritable larynx syndrome and cough hypersensitivity syndrome among other disorders. These conditions are associated with a wide range of airway reflex abnormalities. However, the current device for exploring LPMS is limited because it assesses only the laryngeal adductor reflex during fiber-optic endoscopic evaluations of swallowing and requires a high degree of expertise to obtain reliable results, introducing intrinsic expert variability and subjectivity. We designed, developed and validated a new air-pulse laryngo-pharyngeal endoscopic esthesiometer with a built-in laser range-finder (LPEER) based on the evaluation and control of air-pulse variability determinants and on intrinsic observer variability and subjectivity determinants of the distance, angle and site of stimulus impact. The LPEER was designed to be capable of delivering precise and accurate stimuli with a wide range of intensities that can explore most laryngo-pharyngeal reflexes. We initially explored the potential factors affecting the reliability of LPMS tests and included these factors in a multiple linear regression model. The following factors significantly affected the precision and accuracy of the test (P < 0.001): the tube conducting the air-pulses, the supply pressure of the system, the duration of the air-pulses, and the distance and angle between the end of the tube conducting the air-pulses and the site of impact. To control all of these factors, an LPEER consisting of an air-pulse generator and an endoscopic laser range-finder was designed and manufactured. We assessed the precision and accuracy of the LPEER's stimulus and range-finder according to the coefficient of variation (CV) and by looking at the differences between the measured properties and the desired values, and we performed a pilot validation on ten human subjects. The air-pulses and range-finder exhibited good precision and

Application of the FINDER system to the search for epithermal vein gold-silver deposits : Kushikino, Japan, a case study

USGS Publications Warehouse

Singer, Donald A.; Kouda, Ryoichi

1991-01-01

The FINDER system employs geometric probability, Bayesian statistics, and the normal probability density function to integrate spatial and frequency information to produce a map of probabilities of target centers. Target centers can be mineral deposits, alteration associated with mineral deposits, or any other target that can be represented by a regular shape on a two dimensional map. The size, shape, mean, and standard deviation for each variable are characterized in a control area and the results applied by means of FINDER to the study area. The Kushikino deposit consists of groups of quartz-calcite-adularia veins that produced 55 tonnes of gold and 456 tonnes of silver since 1660. Part of a 6 by 10 km area near Kushikino served as a control area. Within the control area, data plotting, contouring, and cluster analysis were used to identify the barren and mineralized populations. Sodium was found to be depleted in an elliptically shaped area 3.1 by 1.6 km, potassium was both depleted and enriched locally in an elliptically shaped area 3.0 by 1.3 km, and sulfur was enriched in an elliptically shaped area 5.8 by 1.6 km. The potassium, sodium, and sulfur content from 233 surface rock samples were each used in FINDER to produce probability maps for the 12 by 30 km study area which includes Kushikino. High probability areas for each of the individual variables are over and offset up to 4 km eastward from the main Kushikino veins. In general, high probability areas identified by FINDER are displaced from the main veins and cover not only the host andesite and the dacite-andesite that is about the same age as the Kushikino mineralization, but also younger sedimentary rocks, andesite, and tuff units east and northeast of Kushikino. The maps also display the same patterns observed near Kushikino, but with somewhat lower probabilities, about 1.5 km east of the old gold prospect, Hajima, and in a broad zone 2.5 km east-west and 1 km north-south, centered 2 km west of the

Lightning Radio Source Retrieval Using Advanced Lightning Direction Finder (ALDF) Networks

NASA Technical Reports Server (NTRS)

Koshak, William J.; Blakeslee, Richard J.; Bailey, J. C.

1998-01-01

A linear algebraic solution is provided for the problem of retrieving the location and time of occurrence of lightning ground strikes from an Advanced Lightning Direction Finder (ALDF) network. The ALDF network measures field strength, magnetic bearing and arrival time of lightning radio emissions. Solutions for the plane (i.e., no Earth curvature) are provided that implement all of tile measurements mentioned above. Tests of the retrieval method are provided using computer-simulated data sets. We also introduce a quadratic planar solution that is useful when only three arrival time measurements are available. The algebra of the quadratic root results are examined in detail to clarify what portions of the analysis region lead to fundamental ambiguities in source location. Complex root results are shown to be associated with the presence of measurement errors when the lightning source lies near an outer sensor baseline of the ALDF network. In the absence of measurement errors, quadratic root degeneracy (no source location ambiguity) is shown to exist exactly on the outer sensor baselines for arbitrary non-collinear network geometries. The accuracy of the quadratic planar method is tested with computer generated data sets. The results are generally better than those obtained from the three station linear planar method when bearing errors are about 2 deg. We also note some of the advantages and disadvantages of these methods over the nonlinear method of chi(sup 2) minimization employed by the National Lightning Detection Network (NLDN) and discussed in Cummins et al.(1993, 1995, 1998).

ASPIICS: a giant, white light and emission line coronagraph for the ESA proba-3 formation flight mission

NASA Astrophysics Data System (ADS)

Lamy, P. L.; Vivès, S.; Curdt, W.; Damé, L.; Davila, J.; Defise, J.-M.; Fineschi, S.; Heinzel, P.; Howard, Russel; Kuzin, S.; Schmutz, W.; Tsinganos, K.; Zhukov, A.

2017-11-01

Classical externally-occulted coronagraphs are presently limited in their performances by the distance between the external occulter and the front objective. The diffraction fringe from the occulter and the vignetted pupil which degrades the spatial resolution prevent useful observations of the white light corona inside typically 2-2.5 solar radii (Rsun). Formation flying offers and elegant solution to these limitations and allows conceiving giant, externally-occulted coronagraphs using a two-component space system with the external occulter on one spacecraft and the optical instrument on the other spacecraft at a distance of hundred meters [1, 2]. Such an instrument ASPIICS (Association de Satellites Pour l'Imagerie et l'Interférométrie de la Couronne Solaire) has been selected by the European Space Agency (ESA) to fly on its PROBA-3 mission of formation flying demonstration which is presently in phase B (Fig. 1). The classical design of an externally-occulted coronagraph is adapted to the formation flying configuration allowing the detection of the very inner corona as close as 0.04 solar radii from the solar limb. By tuning the position of the occulter spacecraft, it may even be possible to reach the chromosphere and the upper part of the spicules [3]. ASPIICS will perform (i) high spatial resolution imaging of the continuum K+F corona in photometric and polarimetric modes, (ii) high spatial resolution imaging of the E-corona in two coronal emission lines (CEL): Fe XIV and He I D3, and (iii) two-dimensional spectrophotometry of the Fe XIV emission line. ASPIICS will address the question of the coronal heating and the role of waves by characterizing propagating fluctuations (waves and turbulence) in the solar wind acceleration region and by looking for oscillations in the intensity and Doppler shift of spectral lines. The combined imaging and spectral diagnostics capabilities available with ASPIICS will allow mapping the velocity field of the corona both in the

The Project Of Another Low-Cost Metaphase Finder.

PubMed

Furukawa, Akira

2016-12-01

The most popular and 'gold standard' phenomenon in Biological dosimetry is the appearance of dicentric chromosomes in metaphase in white blood cells. The metaphase finder is a tool for biological dosimetry that finds metaphase cells on slide glasses. The author and a software company were using new special software that was faster than conventional systems. A Nikon Eclipse Ni-E microscope with motorised X-Y stage, 4× objective lens and 1920 × 1024 pixels colour camera for hardware were used. The software uses mathematical morphology filters. The new system was compact and low-priced. And the remarkable point is, this system can be applicable not only to human blood, but also to non-human samples. The speed was 208-236 s per 5 × 20 mm area, while capturing 378 images, which achieved the aim of the project. The false-positive ratio achieved below 5% in some slides. © The Author 2016. Published by Oxford University Press. All rights reserved. For Permissions, please email: journals.permissions@oup.com.

Electrons in the solar corona. III - Coronal streamers analysis from balloon-borne coronagraph

NASA Astrophysics Data System (ADS)

Dollfus, A.; Mouradian, Z.

1981-03-01

The solar corona is discussed on the basis of observations made during a 5-hour period in France in September 1971. Using a balloon at an altitude of 32,000 m, the solar corona was cinematographed from 2 to 5 solar radii with an externally occulted coronagraph. It is noted that motions in coronal features, when they occur, exhibit deformations of structures with velocities not exceeding a few tens of km/s. Several streamers were often involved simultaneously; these variations are compatible with magnetic changes or sudden reorganizations of lines of forces. Intensity and polarization measurements are shown to give the electron density with height in the quiet corona above the equator. Three-dimensional structures and localizations of the streamers are deduced from combined photometry, polarimetry, and ground-based K coronametry.

Evidence for a current sheet forming in the wake of a coronal mass ejection from multi-viewpoint coronagraph observations

NASA Astrophysics Data System (ADS)

Patsourakos, S.; Vourlidas, A.

2011-01-01

Context. Ray-like features observed by coronagraphs in the wake of coronal mass ejections (CMEs) are sometimes interpreted as the white light counterparts of current sheets (CSs) produced by the eruption. The 3D geometry of these ray-like features is largely unknown and its knowledge should clarify their association to the CS and place constraints on CME physics and coronal conditions. Aims: If these rays are related to field relaxation behind CMEs, therefore representing current sheets, then they should be aligned to the CME axis. With this study we test these important implications for the first time. Methods: An example of such a post-CME ray was observed by various coronagraphs, including these of the Sun Earth Connection Coronal and Heliospheric investigation (SECCHI) onboard the Solar Terrestrial Relations Observatory (STEREO) twin spacecraft and the Large Angle Spectrometric Coronagraph (LASCO) onboard the Solar and Heliospheric Observatory (SOHO). The ray was observed in the aftermath of a CME which occurred on 9 April 2008. The twin STEREO spacecraft were separated by about 48° on that day. This significant separation combined with a third “eye” view supplied by LASCO allow for a truly multi-viewpoint observation of the ray and of the CME. We applied 3D forward geometrical modeling to the CME and to the ray as simultaneously viewed by SECCHI-A and B and by SECCHI-A and LASCO, respectively. Results: We found that the ray can be approximated by a rectangular slab, nearly aligned with the CME axis, and much smaller than the CME in both terms of thickness and depth (≈0.05 and 0.15 R⊙ respectively). The ray electron density and temperature were substantially higher than their values in the ambient corona. We found that the ray and CME are significantly displaced from the associated post-CME flaring loops. Conclusions: The properties and location of the ray are fully consistent with the expectations of the standard CME theories for post-CME current

Structure finding in cosmological simulations: the state of affairs

NASA Astrophysics Data System (ADS)

Knebe, Alexander; Pearce, Frazer R.; Lux, Hanni; Ascasibar, Yago; Behroozi, Peter; Casado, Javier; Moran, Christine Corbett; Diemand, Juerg; Dolag, Klaus; Dominguez-Tenreiro, Rosa; Elahi, Pascal; Falck, Bridget; Gottlöber, Stefan; Han, Jiaxin; Klypin, Anatoly; Lukić, Zarija; Maciejewski, Michal; McBride, Cameron K.; Merchán, Manuel E.; Muldrew, Stuart I.; Neyrinck, Mark; Onions, Julian; Planelles, Susana; Potter, Doug; Quilis, Vicent; Rasera, Yann; Ricker, Paul M.; Roy, Fabrice; Ruiz, Andrés N.; Sgró, Mario A.; Springel, Volker; Stadel, Joachim; Sutter, P. M.; Tweed, Dylan; Zemp, Marcel

2013-10-01

The ever increasing size and complexity of data coming from simulations of cosmic structure formation demand equally sophisticated tools for their analysis. During the past decade, the art of object finding in these simulations has hence developed into an important discipline itself. A multitude of codes based upon a huge variety of methods and techniques have been spawned yet the question remained as to whether or not they will provide the same (physical) information about the structures of interest. Here we summarize and extent previous work of the `halo finder comparison project': we investigate in detail the (possible) origin of any deviations across finders. To this extent, we decipher and discuss differences in halo-finding methods, clearly separating them from the disparity in definitions of halo properties. We observe that different codes not only find different numbers of objects leading to a scatter of up to 20 per cent in the halo mass and Vmax function, but also that the particulars of those objects that are identified by all finders differ. The strength of the variation, however, depends on the property studied, e.g. the scatter in position, bulk velocity, mass and the peak value of the rotation curve is practically below a few per cent, whereas derived quantities such as spin and shape show larger deviations. Our study indicates that the prime contribution to differences in halo properties across codes stems from the distinct particle collection methods and - to a minor extent - the particular aspects of how the procedure for removing unbound particles is implemented. We close with a discussion of the relevance and implications of the scatter across different codes for other fields such as semi-analytical galaxy formation models, gravitational lensing and observables in general.

Simulation framework for electromagnetic effects in plasmonics, filter apertures, wafer scattering, grating mirrors, and nano-crystals

NASA Astrophysics Data System (ADS)

Ceperley, Daniel Peter

This thesis presents a Finite-Difference Time-Domain simulation framework as well as both scientific observations and quantitative design data for emerging optical devices. These emerging applications required the development of simulation capabilities to carefully control numerical experimental conditions, isolate and quantifying specific scattering processes, and overcome memory and run-time limitations on large device structures. The framework consists of a new version 7 of TEMPEST and auxiliary tools implemented as Matlab scripts. In improving the geometry representation and absorbing boundary conditions in TEMPEST from v6 the accuracy has been sustained and key improvements have yielded application specific speed and accuracy improvements. These extensions include pulsed methods, PML for plasmon termination, and plasmon and scattered field sources. The auxiliary tools include application specific methods such as signal flow graphs of plasmon couplers, Bloch mode expansions of sub-wavelength grating waves, and back-propagation methods to characterize edge scattering in diffraction masks. Each application posed different numerical hurdles and physical questions for the simulation framework. The Terrestrial Planet Finder Coronagraph required accurate modeling of diffraction mask structures too large for solely FDTD analysis. This analysis was achieved through a combination of targeted TEMPEST simulations and full system simulator based on thin mask scalar diffraction models by Ball Aerospace for JPL. TEMPEST simulation showed that vertical sidewalls were the strongest scatterers, adding nearly 2lambda of light per mask edge, which could be reduced by 20° undercuts. TEMPEST assessment of coupling in rapid thermal annealing was complicated by extremely sub-wavelength features and fine meshes. Near 100% coupling and low variability was confirmed even in the presence of unidirectional dense metal gates. Accurate analysis of surface plasmon coupling efficiency by

WFIRST: Data/Instrument Simulation Support at IPAC

NASA Astrophysics Data System (ADS)

Laine, Seppo; Akeson, Rachel; Armus, Lee; Bennett, Lee; Colbert, James; Helou, George; Kirkpatrick, J. Davy; Meshkat, Tiffany; Paladini, Roberta; Ramirez, Solange; Wang, Yun; Xie, Joan; Yan, Lin

2018-01-01

As part of WFIRST Science Center preparations, the IPAC Science Operations Center (ISOC) maintains a repository of 1) WFIRST data and instrument simulations, 2) tools to facilitate scientific performance and feasibility studies using the WFIRST, and 3) parameters summarizing the current design and predicted performance of the WFIRST telescope and instruments. The simulation repository provides access for the science community to simulation code, tools, and resulting analyses. Examples of simulation code with ISOC-built web-based interfaces include EXOSIMS (for estimating exoplanet yields in CGI surveys) and the Galaxy Survey Exposure Time Calculator. In the future the repository will provide an interface for users to run custom simulations of a wide range of coronagraph instrument (CGI) observations and sophisticated tools for designing microlensing experiments. We encourage those who are generating simulations or writing tools for exoplanet observations with WFIRST to contact the ISOC team so we can work with you to bring these to the attention of the broader astronomical community as we prepare for the exciting science that will be enabled by WFIRST.

Can a More User-Friendly Medicare Plan Finder Improve Consumers' Selection of Medicare Plans?

PubMed

Martino, Steven C; Kanouse, David E; Miranda, David J; Elliott, Marc N

2017-10-01

To evaluate the efficacy for consumers of two potential enhancements to the Medicare Plan Finder (MPF)-a simplified data display and a "quick links" home page designed to match the specific tasks that users seek to accomplish on the MPF. Participants (N = 641) were seniors and adult caregivers of seniors who were recruited from a national online panel. Participants browsed a simulated version of the MPF, made a hypothetical plan choice, and reported on their experience. Participants were randomly assigned to one of eight conditions in a fully factorial design: 2 home pages (quick links, current MPF home page) × 2 data displays (simplified, current MPF display) × 2 plan types (stand-alone prescription drug plan [PDP], Medicare Advantage plan with prescription drug coverage [MA-PD]). The quick links page resulted in more favorable perceptions of the MPF, improved users' understanding of the information, and increased the probability of choosing the objectively best plan. The simplified data display resulted in a more favorable evaluation of the website, better comprehension of the displayed information, and, among those choosing a PDP only, an increased probability of choosing the best plan. Design enhancements could markedly improve average website users' understanding, ability to use, and experience of using the MPF. © Health Research and Educational Trust.

A Hybrid Lyot Coronagraph for the Direct Imaging and Spectroscopy of Exoplanet Systems: Recent Results and Prospects

NASA Technical Reports Server (NTRS)

Trauger, John; Moody, Dwight; Gordon, Brian; Krist, John; Mawet, Dimitri

2011-01-01

We report our best laboratory contrast demonstrations achieved to date. We review the design, fabrication, performance, and future prospects of a hybrid focal plane occulter for exoplanet coronagraphy. Composed of thickness-profiled metallic and dielectric thin films vacuum deposited on a fused silica substrate, the hybrid occulter uses two superimposed thin films for control over both the real and imaginary parts of the complex attenuation pattern. Together with a deformable mirror for adjustment of wavefront phase, the hybrid Lyot coronagraph potentially exceeds billion-to one contrast over dark fields extending to within angular separations of 3 lambda/D (3 x the cosmological constant / diameter of the telescope) from the central star, over spectral bandwidths of 20 percent or more, and with throughput efficiencies up to 60 percent. We report laboratory contrasts of 3 x 10 (sup -10) degrees over 2 percent bandwidths, 6 x 10 (sup -10) degrees over 10 percent bandwidths, and 2 x 10 (sup -9) over 20 percent bandwidths, achieved across high contrast fields extending from an inner working angle of 3 lambda/D to a radius of 15 lambda/D. Occulter performance is analyzed in light of recent experiments and optical models, and prospects for further improvements are summarized. The science capabilities of the hybrid Lyot coronagraph are compared with requirements of the ACCESS mission, a representative exoplanet space telescope concept study for the direct imaging and spectroscopy of exoplanet systems. This work has been supported by NASA's Technology Demonstration for Exoplanet Missions (TDEM) program.

Connection between the CMEs in the coronagraph and the MCs near the Earth

NASA Astrophysics Data System (ADS)

Shen, C.; Wang, Y.

2016-12-01

Magnetic Clouds (MCs) are thought to be a subset of the interplanetary counterparts of Coronal Mass Ejections (CMEs) near the Earth. Using different models, the parameters of MCs are obtained based on the in situ observations. In recent, the propagation speed, the expansion speed, and poloidal speed of MCs are obtained based on the velocity-modified cylindrical force-free flux rope model developed by Wang et al. (2015). In this work, we first make the association between the MCs recorded by WIND and their source CMEs observed by SOHO. Then, the parameters of these MCs obtained by the model developed by Wang et al. (2016) will be compared with the parameters of the CMEs during their propagation in the coronagraph. The parameters of CMEs are obtained by the GCS model using multiple observations from SOHO and STEREO.

Flight Integral Field Spectrograph (IFS) Optical Design for WFIRST Coronagraphic Exoplanet Demonstration

NASA Technical Reports Server (NTRS)

Gong, Qian; Groff, Tyler D.; Zimmerman, Neil; Mandell, Avi; McElwain, Michael; Rizzo, Maxime; Saxena, Prabal

2017-01-01

Based on the experience from Prototype Imaging Spectrograph for Coronagraphic Exoplanet Studies (PISCES) for WFIRST, we have moved to the flight instrument design phase. The specifications for flight IFS have similarities and differences from the prototype. This paper starts with the science and system requirement, discusses a number of critical trade-offs: such as IFS type selection, lenslet array shape and layout versus detector pixel accuracy, how to accommodate the larger Field Of View (FOV) and wider wavelength band for a potential add-on StarShade occulter. Finally, the traditional geometric optical design is also investigated and traded: reflective versus refractive, telecentric versus non-telecentric relay. The relay before the lenslet array controls the chief angle distribution on the lenslet array. Our previous paper has addressed how the relay design combined with lenslet arraypinhole mask can further compress the residual star light and increase the contrast. Finally, a complete phase A IFS optical design is presented.

Enceladus Life Finder: the Search for Life in a Habitable Moon

NASA Technical Reports Server (NTRS)

Cable, Morgan L.; Clark, Karla; Lunine, Jonathan I.; Postberg, Frank; Reh, Kim; Spilker, Linda; Waite, J. Hunter

2016-01-01

Enceladus is one of the most intriguing bodies in the solar system. In addition to having one of the brightest and youngest surfaces, this small Saturnian moon was recently discovered to have a plume erupting from its south polar terrain and a global subsurface ocean. The Cassini Mission discovered organics and nitrogen-bearing molecules in the plume, as well as salts and silicates that strongly suggest ocean water in contact with a rocky core. However, Cassini's instruments lack sufficient resolution and mass range to determine if these organics are of biotic origin. The Enceladus Life Finder (ELF) is a Discovery-class mission that would use two state-of-the-art mass spectrometers to target the gas and grains of the plume and search for evidence of life in this alien ocean.

Coronagraphic Observations of the Lunar Sodium Exosphere

NASA Astrophysics Data System (ADS)

Killen, R. M.; Johnson, J. D.; Morgan, T. H.; Potter, A. E.

2017-12-01

We have designed, built and installed a small robotic coronagraph at the Winer Observatory in Sonoita, Arizona, in order to observe the sodium exosphere out to one-half degree around the Moon. Observations are obtained remotely every available clear night from our home base at Goddard Space Flight Center. Our data encompass lunations in 2015, 2016, and 2017, thus we have a long baseline of sodium exospheric calibrated images. We employ an Andover temperature-controlled 1.5 Å wide narrow-band filter centered on the sodium D2 line, and a similar 1.5 Å filter centered blueward of the D2 line by 5 Å. Exposures of 10 minutes are required to image the sodium corona at good signal to noise. Autoguiding is performed locking onto a small bright crater each night. Following each onband-offband exposure pair, on- and off-band images of the lunar surface are collected by taking a 0.1- 0.5 second exposures with the open filter. The sodium is calibrated using the counts in the open Moon images and the Hapke function. We use both dark and bright Hapke parameters for comparison check using Mare and highlands, respectively. In order to obtain the sodium profile around the entire limb, the images are transformed using a polar transform and the profiles are extracted automatically. We have derived zenith column abundances and surface abundances around the lunar limb for each observation and we fit these observations with a 3-dimensional model. We compare our lunar model derived from these observations with the data from the spectrograph onboard the LADEE spacecraft.

Optimization of Planet Finder Observing Strategy

NASA Astrophysics Data System (ADS)

Sinukoff, E.

2014-03-01

We evaluate radial velocity observing strategies to be considered for future planethunting surveys with the Automated Planet Finder, a new 2.4-m telescope at Lick Observatory. Observing strategies can be optimized to mitigate stellar noise, which can mask and imitate the weak Doppler signals of low-mass planets. We estimate and compare sensitivities of 5 different observing strategies to planets around G2-M2 dwarfs, constructing RV noise models for each stellar spectral type, accounting for acoustic, granulation, and magnetic activity modes. The strategies differ in exposure time, nightly and monthly cadence, and number of years. Synthetic RV time-series are produced by injecting a planet signal onto the stellar noise, sampled according to each observing strategy. For each star and each observing strategy, thousands of planet injection recovery trials are conducted to determine the detection efficiency as a function of orbital period, minimum mass, and eccentricity. We find that 4-year observing strategies of 10 nights per month are sensitive to planets ~25-40% lower in mass than the corresponding 1 year strategies of 30 nights per month. Three 5-minute exposures spaced evenly throughout each night provide a 10% gain in sensitivity over the corresponding single 15-minute exposure strategies. All strategies are sensitive to planets of lowest mass around the modeled K7 dwarf. This study indicates that APF surveys adopting the 4-year strategies should detect Earth-mass planets on < 10-day orbits around quiet late-K dwarfs as well as > 1.6 Earth-mass planets in their habitable zones.

Deep Imaging Search for Planets Forming in the TW Hya Protoplanetary Disk with the Keck/NIRC2 Vortex Coronagraph

NASA Astrophysics Data System (ADS)

Ruane, G.; Mawet, D.; Kastner, J.; Meshkat, T.; Bottom, M.; Femenía Castellá, B.; Absil, O.; Gomez Gonzalez, C.; Huby, E.; Zhu, Z.; Jenson-Clem, R.; Choquet, É.; Serabyn, E.

2017-08-01

Distinct gap features in the nearest protoplanetary disk, TW Hya (distance of 59.5 ± 0.9 pc), may be signposts of ongoing planet formation. We performed long-exposure thermal infrared coronagraphic imaging observations to search for accreting planets, especially within dust gaps previously detected in scattered light and submillimeter-wave thermal emission. Three nights of observations with the Keck/NIRC2 vortex coronagraph in L‧ (3.4-4.1 μm) did not reveal any statistically significant point sources. We thereby set strict upper limits on the masses of non-accreting planets. In the four most prominent disk gaps at 24, 41, 47, and 88 au, we obtain upper mass limits of 1.6-2.3, 1.1-1.6, 1.1-1.5, and 1.0-1.2 Jupiter masses (M J), assuming an age range of 7-10 Myr for TW Hya. These limits correspond to the contrast at 95% completeness (true positive fraction of 0.95) with a 1% chance of a false positive within 1″ of the star. We also approximate an upper limit on the product of the planet mass and planetary accretion rate of {M}{{p}}\\dot{M}≲ {10}-8 {M}{{J}}2 {{yr}}-1 implying that any putative ˜0.1 M J planet, which could be responsible for opening the 24 au gap, is presently accreting at rates insufficient to build up a Jupiter mass within TW Hya’s pre-main-sequence lifetime.

M-Finder: Uncovering functionally associated proteins from interactome data integrated with GO annotations

PubMed Central

2013-01-01

Background Protein-protein interactions (PPIs) play a key role in understanding the mechanisms of cellular processes. The availability of interactome data has catalyzed the development of computational approaches to elucidate functional behaviors of proteins on a system level. Gene Ontology (GO) and its annotations are a significant resource for functional characterization of proteins. Because of wide coverage, GO data have often been adopted as a benchmark for protein function prediction on the genomic scale. Results We propose a computational approach, called M-Finder, for functional association pattern mining. This method employs semantic analytics to integrate the genome-wide PPIs with GO data. We also introduce an interactive web application tool that visualizes a functional association network linked to a protein specified by a user. The proposed approach comprises two major components. First, the PPIs that have been generated by high-throughput methods are weighted in terms of their functional consistency using GO and its annotations. We assess two advanced semantic similarity metrics which quantify the functional association level of each interacting protein pair. We demonstrate that these measures outperform the other existing methods by evaluating their agreement to other biological features, such as sequence similarity, the presence of common Pfam domains, and core PPIs. Second, the information flow-based algorithm is employed to discover a set of proteins functionally associated with the protein in a query and their links efficiently. This algorithm reconstructs a functional association network of the query protein. The output network size can be flexibly determined by parameters. Conclusions M-Finder provides a useful framework to investigate functional association patterns with any protein. This software will also allow users to perform further systematic analysis of a set of proteins for any specific function. It is available online at http

FluReF, an automated flu virus reassortment finder based on phylogenetic trees.

PubMed

Yurovsky, Alisa; Moret, Bernard M E

2011-01-01

Reassortments are events in the evolution of the genome of influenza (flu), whereby segments of the genome are exchanged between different strains. As reassortments have been implicated in major human pandemics of the last century, their identification has become a health priority. While such identification can be done "by hand" on a small dataset, researchers and health authorities are building up enormous databases of genomic sequences for every flu strain, so that it is imperative to develop automated identification methods. However, current methods are limited to pairwise segment comparisons. We present FluReF, a fully automated flu virus reassortment finder. FluReF is inspired by the visual approach to reassortment identification and uses the reconstructed phylogenetic trees of the individual segments and of the full genome. We also present a simple flu evolution simulator, based on the current, source-sink, hypothesis for flu cycles. On synthetic datasets produced by our simulator, FluReF, tuned for a 0% false positive rate, yielded false negative rates of less than 10%. FluReF corroborated two new reassortments identified by visual analysis of 75 Human H3N2 New York flu strains from 2005-2008 and gave partial verification of reassortments found using another bioinformatics method. FluReF finds reassortments by a bottom-up search of the full-genome and segment-based phylogenetic trees for candidate clades--groups of one or more sampled viruses that are separated from the other variants from the same season. Candidate clades in each tree are tested to guarantee confidence values, using the lengths of key edges as well as other tree parameters; clades with reassortments must have validated incongruencies among segment trees. FluReF demonstrates robustness of prediction for geographically and temporally expanded datasets, and is not limited to finding reassortments with previously collected sequences. The complete source code is available from http://lcbb.epfl.ch/software.html.

Computer graphics testbed to simulate and test vision systems for space applications

NASA Technical Reports Server (NTRS)

Cheatham, John B.

1991-01-01

Artificial intelligence concepts are applied to robotics. Artificial neural networks, expert systems and laser imaging techniques for autonomous space robots are being studied. A computer graphics laser range finder simulator developed by Wu has been used by Weiland and Norwood to study use of artificial neural networks for path planning and obstacle avoidance. Interest is expressed in applications of CLIPS, NETS, and Fuzzy Control. These applications are applied to robot navigation.

MinFinder: Locating all the local minima of a function

NASA Astrophysics Data System (ADS)

Tsoulos, Ioannis G.; Lagaris, Isaac E.

2006-01-01

A new stochastic clustering algorithm is introduced that aims to locate all the local minima of a multidimensional continuous and differentiable function inside a bounded domain. The accompanying software (MinFinder) is written in ANSI C++. However, the user may code his objective function either in C++, C or Fortran 77. We compare the performance of this new method to the performance of Multistart and Topographical Multilevel Single Linkage Clustering on a set of benchmark problems. Program summaryTitle of program:MinFinder Catalogue identifier:ADWU Program summary URL:http://cpc.cs.qub.ac.uk/summaries/ADWU Program obtainable from: CPC Program Library, Queen's University of Belfast, N. Ireland Computer for which the program is designed and others on which is has been tested:The tool is designed to be portable in all systems running the GNU C++ compiler Installation:University of Ioannina, Greece Programming language used:GNU-C++, GNU-C, GNU Fortran 77 Memory required to execute with typical data:200 KB No. of bits in a word:32 No. of processors used:1 Has the code been vectorized or parallelized?:no No. of lines in distributed program, including test data, etc.:5797 No. of bytes in distributed program, including test data, etc.:588 121 Distribution format:gzipped tar file Nature of the physical problem:A multitude of problems in science and engineering are often reduced to minimizing a function of many variables. There are instances that a local optimum does not correspond to the desired physical solution and hence the search for a better solution is required. Local optimization techniques can be trapped in any local minimum. Global optimization is then the appropriate tool. For example, solving a non-linear system of equations via optimization, employing a "least squares" type of objective, one may encounter many local minima that do not correspond to solutions, i.e. they are far from zero. Method of solution:Using a uniform pdf, points are sampled from the

Coronagraphic Observations of the Lunar Sodium Exosphere Near the Lunar Surface

NASA Technical Reports Server (NTRS)

Potter, A. E.; Morgan, T. H.

1998-01-01

The sodium exosphere of the Moon was observed using a solar coronagraph to occult the illuminated surface of the Moon. Exceptionally dust-free atmospheric conditions were required to allow the faint emission from sunlight scattered by lunar sodium atoms to be distinguished from moonlight scattered from atmospheric dust. At 0300 UT on April 22, 1994, ideal conditions prevailed for a few hours, and one excellent image of the sodium exosphere was measured, with the Moon at a phase angle of 51 deg, 81 % illuminated. Analysis of the image data showed that the weighted mean temperature of the exosphere was 1280 K and that the sodium column density varied approximately as cosine-cubed of the latitude. A cosine-cubed variation is an unexpected result, since the flux per unit area of solar photons and solar particles varies as the cosine of latitude. It is suggested that this can be explained by a temperature dependence for the sputtering of sodium atoms from the surface. This is a characteristic feature of chemical sputtering, which has been previously proposed to explain the sodium exosphere of Mercury. A possible interaction between chemical sputtering and solar photons is suggested.

APIC: Absolute Position Interfero Coronagraph for direct exoplanet detection: first laboratory results

NASA Astrophysics Data System (ADS)

Allouche, Fatmé; Glindemann, Andreas; Aristidi, Eric; Vakili, Farrokh

2010-07-01

For the detection and direct imaging of exoplanets, when the intensity ratio between a star and its orbiting planet can largely exceed 106, coronagraphic methods are mandatory. In 1996, a concept of achromatic interferocoronagraph (AIC) was presented by J. Gay and Y. Rabbia for the detection of very faint stellar companions, such as exoplanets. In an earlier paper, we presented a modified version of the AIC permitting to determine the relative position of these faint companions with respect to the parent star, a problem unsolved in the original design of the AIC. Our modification lied in the use of cylindrical lens doublets as field rotator. By placing two of them in one arm of the interferometric set-up of AIC, we destroyed the axis of symmetry induced by the AIC's original design. Our theoretical study, along with the numerical computations, presented then, and the preliminary test bench results aiming at validating the cylindrical lens doublet field rotation capability, presented in this paper, show that the axis of symmetry is destroyed when one of the cylindrical doublets is rotated around the optic axis.

Formation Algorithms and Simulation Testbed

NASA Technical Reports Server (NTRS)

Wette, Matthew; Sohl, Garett; Scharf, Daniel; Benowitz, Edward

2004-01-01

Formation flying for spacecraft is a rapidly developing field that will enable a new era of space science. For one of its missions, the Terrestrial Planet Finder (TPF) project has selected a formation flying interferometer design to detect earth-like planets orbiting distant stars. In order to advance technology needed for the TPF formation flying interferometer, the TPF project has been developing a distributed real-time testbed to demonstrate end-to-end operation of formation flying with TPF-like functionality and precision. This is the Formation Algorithms and Simulation Testbed (FAST) . This FAST was conceived to bring out issues in timing, data fusion, inter-spacecraft communication, inter-spacecraft sensing and system-wide formation robustness. In this paper we describe the FAST and show results from a two-spacecraft formation scenario. The two-spacecraft simulation is the first time that precision end-to-end formation flying operation has been demonstrated in a distributed real-time simulation environment.

Deep UV to NIR Space Telescopes and Exoplanet Coronagraphs: A Trade Study on Throughput, Polarization, Mirror Coating Options and Requirements

NASA Technical Reports Server (NTRS)

Balasubramanian, Kunjithapatham; Shaklan, Stuart; Give'on, Amir; Cady, Eric; Marchen, Luis

2011-01-01

The NASA Exoplanet program and the Cosmic Origins program are exploring technical options to combine the visible to NIR performance requirements of a space coronagraph with the general astrophysics requirements of a space telescope covering the deep UV spectrum. Are there compatible options in terms of mirror coatings and telescope architecture to satisfy both goals? In this paper, we address some of the main concerns, particularly relating to polarization in the visible and throughput in the UV. Telescope architectures employing different coating options compatible with current technology are considered in this trade study.

Uncovering mass segregation with galaxy analogues in dark-matter simulations

NASA Astrophysics Data System (ADS)

Joshi, Gandhali D.; Parker, Laura C.; Wadsley, James

2016-10-01

We investigate mass segregation in group and cluster environments by identifying galaxy analogues in high-resolution dark-matter simulations. Subhaloes identified by the Amiga's Halo Finder (AHF) and ROCKSTAR halo finders have similar mass functions, independent of resolution, but different radial distributions due to significantly different subhalo hierarchies. We propose a simple way to classify subhaloes as galaxy analogues. The radial distributions of galaxy analogues agree well at large halocentric radii for both AHF and ROCKSTAR but disagree near parent halo centres where the phase-space information used by ROCKSTAR is essential. We see clear mass segregation at small radii (within 0.5 rvir) with average galaxy analogue mass decreasing with radius. Beyond the virial radius, we find a mild trend where the average galaxy analogue mass increases with radius. These mass segregation trends are strongest in small groups and dominated by the segregation of low-mass analogues. The lack of mass segregation in massive galaxy analogues suggests that the observed trends are driven by the complex accretion histories of the parent haloes rather than dynamical friction.

Diagnostic Simulations of the Lunar Exosphere using Coma and Tail

NASA Astrophysics Data System (ADS)

Lee, Dong Wook; Kim, Sang J.

2017-10-01

The characteristics of the lunar exosphere can be constrained by comparing simulated models with observational data of the coma and tail (Lee et al., JGR, 2011); and thus far a few independent approaches on this issue have been performed and presented in the literature. Since there are two-different observational constraints for the lunar exosphere, it is interesting to find the best exospheric model that can account for the observed characteristics of the coma and tail. Considering various initial conditions of different sources and space weather, we present preliminary time-dependent simulations between the initial and final stages of the development of the lunar tail. Based on an updated 3-D model, we are planning to conduct numerous simulations to constrain the best model parameters from the coma images obtained from coronagraph observations supported by a NASA monitoring program (Morgan, Killen, and Potter, AGU, 2015) and future tail data.

KF-finder: identification of key factors from host-microbial networks in cervical cancer.

PubMed

Hu, Jialu; Gao, Yiqun; Zheng, Yan; Shang, Xuequn

2018-04-24

The human body is colonized by a vast number of microbes. Microbiota can benefit many normal life processes, but can also cause many diseases by interfering the regular metabolism and immune system. Recent studies have demonstrated that the microbial community is closely associated with various types of cell carcinoma. The search for key factors, which also refer to cancer causing agents, can provide an important clue in understanding the regulatory mechanism of microbiota in uterine cervix cancer. In this paper, we investigated microbiota composition and gene expression data for 58 squamous and adenosquamous cell carcinoma. A host-microbial covariance network was constructed based on the 16s rRNA and gene expression data of the samples, which consists of 259 abundant microbes and 738 differentially expressed genes (DEGs). To search for risk factors from host-microbial networks, the method of bi-partite betweenness centrality (BpBC) was used to measure the risk of a given node to a certain biological process in hosts. A web-based tool KF-finder was developed, which can efficiently query and visualize the knowledge of microbiota and differentially expressed genes (DEGs) in the network. Our results suggest that prevotellaceade, tissierellaceae and fusobacteriaceae are the most abundant microbes in cervical carcinoma, and the microbial community in cervical cancer is less diverse than that of any other boy sites in health. A set of key risk factors anaerococcus, hydrogenophilaceae, eubacterium, PSMB10, KCNIP1 and KRT13 have been identified, which are thought to be involved in the regulation of viral response, cell cycle and epithelial cell differentiation in cervical cancer. It can be concluded that permanent changes of microbiota composition could be a major force for chromosomal instability, which subsequently enables the effect of key risk factors in cancer. All our results described in this paper can be freely accessed from our website at http://www.nwpu-bioinformatics.com/KF-finder/ .

Automatic Image Processing Workflow for the Keck/NIRC2 Vortex Coronagraph

NASA Astrophysics Data System (ADS)

Xuan, Wenhao; Cook, Therese; Ngo, Henry; Zawol, Zoe; Ruane, Garreth; Mawet, Dimitri

2018-01-01

The Keck/NIRC2 camera, equipped with the vortex coronagraph, is an instrument targeted at the high contrast imaging of extrasolar planets. To uncover a faint planet signal from the overwhelming starlight, we utilize the Vortex Image Processing (VIP) library, which carries out principal component analysis to model and remove the stellar point spread function. To bridge the gap between data acquisition and data reduction, we implement a workflow that 1) downloads, sorts, and processes data with VIP, 2) stores the analysis products into a database, and 3) displays the reduced images, contrast curves, and auxiliary information on a web interface. Both angular differential imaging and reference star differential imaging are implemented in the analysis module. A real-time version of the workflow runs during observations, allowing observers to make educated decisions about time distribution on different targets, hence optimizing science yield. The post-night version performs a standardized reduction after the observation, building up a valuable database that not only helps uncover new discoveries, but also enables a statistical study of the instrument itself. We present the workflow, and an examination of the contrast performance of the NIRC2 vortex with respect to factors including target star properties and observing conditions.

Speckle temporal stability in XAO coronagraphic images. II. Refine model for quasi-static speckle temporal evolution for VLT/SPHERE

NASA Astrophysics Data System (ADS)

Martinez, P.; Kasper, M.; Costille, A.; Sauvage, J. F.; Dohlen, K.; Puget, P.; Beuzit, J. L.

2013-06-01

Context. Observing sequences have shown that the major noise source limitation in high-contrast imaging is the presence of quasi-static speckles. The timescale on which quasi-static speckles evolve is determined by various factors, mechanical or thermal deformations, among others. Aims: Understanding these time-variable instrumental speckles and, especially, their interaction with other aberrations, referred to as the pinning effect, is paramount for the search for faint stellar companions. The temporal evolution of quasi-static speckles is, for instance, required for quantifying the gain expected when using angular differential imaging (ADI) and to determining the interval on which speckle nulling techniques must be carried out. Methods: Following an early analysis of a time series of adaptively corrected, coronagraphic images obtained in a laboratory condition with the high-order test bench (HOT) at ESO Headquarters, we confirm our results with new measurements carried out with the SPHERE instrument during its final test phase in Europe. The analysis of the residual speckle pattern in both direct and differential coronagraphic images enables the characterization of the temporal stability of quasi-static speckles. Data were obtained in a thermally actively controlled environment reproducing realistic conditions encountered at the telescope. Results: The temporal evolution of the quasi-static wavefront error exhibits a linear power law, which can be used to model quasi-static speckle evolution in the context of forthcoming high-contrast imaging instruments, with implications for instrumentation (design, observing strategies, data reduction). Such a model can be used for instance to derive the timescale on which non-common path aberrations must be sensed and corrected. We found in our data that quasi-static wavefront error increases with ~0.7 Å per minute.

Deriving and Constraining 3D CME Kinematic Parameters from Multi-Viewpoint Coronagraph Images

NASA Astrophysics Data System (ADS)

Thompson, B. J.; Mei, H. F.; Barnes, D.; Colaninno, R. C.; Kwon, R.; Mays, M. L.; Mierla, M.; Moestl, C.; Richardson, I. G.; Verbeke, C.

2017-12-01

Determining the 3D properties of a coronal mass ejection using multi-viewpoint coronagraph observations can be a tremendously complicated process. There are many factors that inhibit the ability to unambiguously identify the speed, direction and shape of a CME. These factors include the need to separate the "true" CME mass from shock-associated brightenings, distinguish between non-radial or deflected trajectories, and identify asymmetric CME structures. Additionally, different measurement methods can produce different results, sometimes with great variations. Part of the reason for the wide range of values that can be reported for a single CME is due to the difficulty in determining the CME's longitude since uncertainty in the angle of the CME relative to the observing image planes results in errors in the speed and topology of the CME. Often the errors quoted in an individual study are remarkably small when compared to the range of values that are reported by different authors for the same CME. For example, two authors may report speeds of 700 +- 50 km/sec and 500+-50 km/sec for the same CME. Clearly a better understanding of the accuracy of CME measurements, and an improved assessment of the limitations of the different methods, would be of benefit. We report on a survey of CME measurements, wherein we compare the values reported by different authors and catalogs. The survey will allow us to establish typical errors for the parameters that are commonly used as inputs for CME propagation models such as ENLIL and EUHFORIA. One way modelers handle inaccuracies in CME parameters is to use an ensemble of CMEs, sampled across ranges of latitude, longitude, speed and width. The CMEs simulated in order to determine the probability of a "direct hit" and, for the cases with a "hit," derive a range of possible arrival times. Our study will provide improved guidelines for generating CME ensembles that more accurately sample across the range of plausible values.

An Integral-Field Spectrograph for a Terrestrial Planet Finding Mission

NASA Technical Reports Server (NTRS)

Heap, Sara R.

2011-01-01

We describe a conceptual design for an integral field spectrograph for characterizing exoplanets that we developed for NASA's Terrestrial Planet Finder Coronagraph (TPF-C), although it is equally applicable to an external-occulter mission. The spectrograph fulfills all four scientific objectives of a terrestrial planet finding mission by: (1) Spectrally characterizing the atmospheres of detected planets in search of signatures of habitability or even biological activity; (2) Directly detecting terrestrial planets in the habitable zone around nearby stars; (3) Studying all constituents of a planetary system including terrestrial and giant planets, gas and dust around sun-like stars of different ages and metallicities; (4) Enabling simultaneous, high-spatial-resolution, spectroscopy of all astrophysical sources regardless of central source luminosity, such as AGN's, proplyds, etc.

LC-IMS-MS Feature Finder. Detecting Multidimensional Liquid Chromatography, Ion Mobility, and Mass Spectrometry Features in Complex Datasets

DOE Office of Scientific and Technical Information (OSTI.GOV)

Crowell, Kevin L.; Slysz, Gordon W.; Baker, Erin Shammel

2013-09-05

We introduce a command line software application LC-IMS-MS Feature Finder that searches for molecular ion signatures in multidimensional liquid chromatography-ion mobility spectrometry-mass spectrometry (LC-IMS-MS) data by clustering deisotoped peaks with similar monoisotopic mass, charge state, LC elution time, and ion mobility drift time values. The software application includes an algorithm for detecting and quantifying co-eluting chemical species, including species that exist in multiple conformations that may have been separated in the IMS dimension.

Range estimation techniques in single-station thunderstorm warning sensors based upon gated, wideband, magnetic direction finder technology

NASA Technical Reports Server (NTRS)

Pifer, Alburt E.; Hiscox, William L.; Cummins, Kenneth L.; Neumann, William T.

1991-01-01

Gated, wideband, magnetic direction finders (DFs) were originally designed to measure the bearing of cloud-to-ground lightning relative to the sensor. A recent addition to this device uses proprietary waveform discrimination logic to select return stroke signatures and certain range dependent features in the waveform to provide an estimate of range of flashes within 50 kms. The enhanced ranging techniques are discussed which were designed and developed for use in single station thunderstorm warning sensor. Included are the results of on-going evaluations being conducted under a variety of meteorological and geographic conditions.

Studying Notable Debris Disks In L-band with the Vortex Coronagraph

NASA Astrophysics Data System (ADS)

Patel, Rahul; Beichman, Charles; Choquet, Elodie; Mawet, Dimitri; Meshkat, Tiffany; ygouf, marie

2018-01-01

Resolved images of circumstellar disks are integral to our understanding of planetary systems, as the micron sized dust grains that comprise the disk are born from the collisional grinding of planetesimals by larger planets in the system. Resolved images are essential to determining grain properties that might otherwise be degenerate from analyzing the star’s spectral energy distribution. Though the majority of scattered light images of disks are obtained at optical and near-IR wavelengths, only a few have been imaged in the thermal IR at L-band. Probing the spatial features of disks at L-band opens up the possibility of constraining additional grain properties, such as water/ice features.Here, we present the results of our effort to image the disks of a few notable systems at L-band using the NIRC2 imager at Keck, in conjunction with the newly commissioned vector vortex coronagraph. The vortex, along with the QACITS fine guiding program installed at Keck, enables us to probe the small ~lambda/D angular separations of these systems, and reach contrasts of 1/100,000. We will discuss the systems that have been imaged, and lessons learned while imaging in L-band. Our analysis of these disks reveal features previously unseen, and will lay the foundation for followup studies by missions such as JWST at similar wavelengths from space.

Preliminary Analysis of Effect of Random Segment Errors on Coronagraph Performance

NASA Technical Reports Server (NTRS)

Stahl, Mark T.; Shaklan, Stuart B.; Stahl, H. Philip

2015-01-01

Are we alone in the Universe is probably the most compelling science question of our generation. To answer it requires a large aperture telescope with extreme wavefront stability. To image and characterize Earth-like planets requires the ability to block 10(exp 10) of the host stars light with a 10(exp -11) stability. For an internal coronagraph, this requires correcting wavefront errors and keeping that correction stable to a few picometers rms for the duration of the science observation. This requirement places severe specifications upon the performance of the observatory, telescope and primary mirror. A key task of the AMTD project (initiated in FY12) is to define telescope level specifications traceable to science requirements and flow those specifications to the primary mirror. From a systems perspective, probably the most important question is: What is the telescope wavefront stability specification? Previously, we suggested this specification should be 10 picometers per 10 minutes; considered issues of how this specification relates to architecture, i.e. monolithic or segmented primary mirror; and asked whether it was better to have few or many segmented. This paper reviews the 10 picometers per 10 minutes specification; provides analysis related to the application of this specification to segmented apertures; and suggests that a 3 or 4 ring segmented aperture is more sensitive to segment rigid body motion that an aperture with fewer or more segments.

Optimized principal component analysis on coronagraphic images of the fomalhaut system

DOE Office of Scientific and Technical Information (OSTI.GOV)

Meshkat, Tiffany; Kenworthy, Matthew A.; Quanz, Sascha P.

We present the results of a study to optimize the principal component analysis (PCA) algorithm for planet detection, a new algorithm complementing angular differential imaging and locally optimized combination of images (LOCI) for increasing the contrast achievable next to a bright star. The stellar point spread function (PSF) is constructed by removing linear combinations of principal components, allowing the flux from an extrasolar planet to shine through. The number of principal components used determines how well the stellar PSF is globally modeled. Using more principal components may decrease the number of speckles in the final image, but also increases themore » background noise. We apply PCA to Fomalhaut Very Large Telescope NaCo images acquired at 4.05 μm with an apodized phase plate. We do not detect any companions, with a model dependent upper mass limit of 13-18 M {sub Jup} from 4-10 AU. PCA achieves greater sensitivity than the LOCI algorithm for the Fomalhaut coronagraphic data by up to 1 mag. We make several adaptations to the PCA code and determine which of these prove the most effective at maximizing the signal-to-noise from a planet very close to its parent star. We demonstrate that optimizing the number of principal components used in PCA proves most effective for pulling out a planet signal.« less

Ground-based adaptive optics coronagraphic performance under closed-loop predictive control

NASA Astrophysics Data System (ADS)

Males, Jared R.; Guyon, Olivier

2018-01-01

The discovery of the exoplanet Proxima b highlights the potential for the coming generation of giant segmented mirror telescopes (GSMTs) to characterize terrestrial-potentially habitable-planets orbiting nearby stars with direct imaging. This will require continued development and implementation of optimized adaptive optics systems feeding coronagraphs on the GSMTs. Such development should proceed with an understanding of the fundamental limits imposed by atmospheric turbulence. Here, we seek to address this question with a semianalytic framework for calculating the postcoronagraph contrast in a closed-loop adaptive optics system. We do this starting with the temporal power spectra of the Fourier basis calculated assuming frozen flow turbulence, and then apply closed-loop transfer functions. We include the benefits of a simple predictive controller, which we show could provide over a factor of 1400 gain in raw point spread function contrast at 1 λ/D on bright stars, and more than a factor of 30 gain on an I=7.5 mag star such as Proxima. More sophisticated predictive control can be expected to improve this even further. Assuming a photon-noise limited observing technique such as high-dispersion coronagraphy, these gains in raw contrast will decrease integration times by the same large factors. Predictive control of atmospheric turbulence should therefore be seen as one of the key technologies that will enable ground-based telescopes to characterize terrestrial planets.

Analogous detection of circulating tumor cells using the AccuCyte® -CyteFinder® system and ISET system in patients with locally advanced and metastatic prostate cancer.

PubMed

van der Toom, Emma E; Groot, Vincent P; Glavaris, Stephanie A; Gemenetzis, Georgios; Chalfin, Heather J; Wood, Laura D; Wolfgang, Christopher L; de la Rosette, Jean J M C H; de Reijke, Theo M; Pienta, Kenneth J

2018-03-01

Circulating tumor cells (CTCs) can provide important information on patient's prognosis and treatment efficacy. Currently, a plethora of methods is available for the detection of these rare cells. We compared the outcomes of two of those methods to enumerate and characterize CTCs in patients with locally advanced and metastatic prostate cancer (PCa). First, the selection-free AccuCyte ® - CyteFinder ® system (RareCyte ® , Inc., Seattle, WA) and second, the ISET system (Rarecells Diagnostics, France), a CTC detection method based on cell size-exclusion. Peripheral blood samples were obtained from 15 patients with metastatic PCa and processed in parallel, using both methods according to manufacturer's protocol. CTCs were identified by immunofluorescence, using commercially available antibodies to pancytokeratin (PanCK), EpCAM, CD45/CD66b/CD34/CD11b/CD14 (AccuCyte ® - CyteFinder ® system), and pancytokeratin, vimentin (Vim) and CD45 (ISET system). The median CTC count was 5 CTCs/7.5 mL (range, 0-20) for the AccuCyte ® - CyteFinder ® system and 37 CTCs/7.5 mL (range, 8-139) for the ISET system (P < 0.001). Total CTC counts obtained for the two methods were correlated (r = 0.750, P = 0.001). When separating the total CTC count obtained with the ISET system in PanCK+/Vim- and PanCK+/Vim+ CTCs, the total CTC count obtained with the AccuCyte ® - CyteFinder ® system was moderately correlated with the PanCK+/Vim- CTCs, and strongly correlated with the PanCK+/Vim+ CTCs (r = 0.700, P = 0.004 and r = 0.810, P < 0.001, respectively). Our results highlight significant disparities in the enumeration and phenotype of CTCs detected by both techniques. Although the median amount of CTCs/7.5 mL differed significantly, total CTC counts of both methods were strongly correlated. For future studies, a more uniform approach to the isolation and definition of CTCs based on immunofluorescent stains is needed to provide reproducible results that can

The Integrated Cluster Finder for the ARCHES project

NASA Astrophysics Data System (ADS)

Mints, Alexey; Schwope, Axel; Rosen, Simon; Pineau, François-Xavier; Carrera, Francisco

2017-01-01

Context. Clusters of galaxies are important for cosmology and astrophysics. They may be discovered through either the summed optical/IR radiation originating from their member galaxies or via X-ray emission originating from the hot intracluster medium. X-ray samples are not affected by projection effects but a redshift determination typically needs optical and infrared follow-up to then infer X-ray temperatures and luminosities. Aims: We want to confirm serendipitously discovered X-ray emitting cluster candidates and measure their cosmological redshift through the analysis and exploration of multi-wavelength photometric catalogues. Methods: We developed a tool, the Integrated Cluster Finder (ICF), to search for clusters by determining overdensities of potential member galaxies in optical and infrared catalogues. Based on a spectroscopic meta-catalogue we calibrated colour-redshift relations that combine optical (SDSS) and IR data (UKIDSS, WISE). The tool is used to quantify the overdensity of galaxies against the background via a modified redMaPPer technique and to quantify the confidence of a cluster detection. Results: Cluster finding results are compared to reference catalogues found in the literature. The results agree to within 95-98%. The tool is used to confirm 488 out of 830 cluster candidates drawn from 3XMMe in the footprint of the SDSS and CFHT catalogues. Conclusions: The ICF is a flexible and highly efficient tool to search for galaxy clusters in multiple catalogues and is freely available to the community. It may be used to identify the cluster content in future X-ray catalogues from XMM-Newton and eventually from eROSITA.

THERMAL STRUCTURE OF CORONAL LOOPS AS SEEN WITH NORIKURA CORONAGRAPH

DOE Office of Scientific and Technical Information (OSTI.GOV)

Prasad, S. Krishna; Singh, Jagdev; Ichimoto, K., E-mail: krishna@iiap.res.in

2013-03-10

The thermal structure of a coronal loop, both along and across the loop, is vital in determining the exact plasma heating mechanism. High-resolution spectroscopic observations of the off-limb corona were made using the 25 cm Norikura coronagraph, located at Norikura, Japan. Observations on a number of days were made simultaneously in four forbidden iron emission lines, namely, the [Fe XI] 7892 A line, the [Fe XIII] 10747 A and 10798 A lines, and the [Fe XIV] 5303 A line and on some days made only in the [Fe XI] 7892 A and [Fe X] 6374 A lines. Using temperature sensitivemore » emission line ratios [Fe XIV] 5303 A/[Fe XIII] 10747 A and [Fe XI] 7892 A/[Fe X] 6374 A, we compute the electron temperatures along 18 different loop structures observed on different days. We find a significant negative temperature gradient in all of the structures observed in Fe XIV and Fe XIII and a positive temperature gradient in the structures observed in Fe XI and Fe X. Combining these results with the previous investigations by Singh and his collaborators, we infer that the loop tops, in general, appear hotter when observed in colder lines and colder when observed in relatively hotter lines as compared to their coronal foot points. We suggest that this contrasting trend observed in the temperature variation along the loop structures can be explained by a gradual interaction of different temperature plasma. The exact mechanism responsible for this interaction must be investigated further and has the potential to constrain loop heating models.« less

CME Flux Rope and Shock Identifications and Locations: Comparison of White Light Data, Graduated Cylindrical Shell Model, and MHD Simulations

NASA Technical Reports Server (NTRS)

Schmidt, J. M.; Cairns, Iver H.; Xie, Hong; St. Cyr, O. C.; Gopalswamy, N.

2016-01-01

Coronal mass ejections (CMEs) are major transient phenomena in the solar corona that are observed with ground-based and spacecraft-based coronagraphs in white light or with in situ measurements by spacecraft. CMEs transport mass and momentum and often drive shocks. In order to derive the CME and shock trajectories with high precision, we apply the graduated cylindrical shell (GCS) model to fit a flux rope to the CME directed toward STEREO A after about 19:00 UT on 29 November 2013 and check the quality of the heliocentric distance-time evaluations by carrying out a three-dimensional magnetohydrodynamic (MHD) simulation of the same CME with the Block Adaptive Tree Solar-Wind Roe Upwind Scheme (BATS-R-US) code. Heliocentric distances of the CME and shock leading edges are determined from the simulated white light images and magnetic field strength data. We find very good agreement between the predicted and observed heliocentric distances, showing that the GCS model and the BATS-R-US simulation approach work very well and are consistent. In order to assess the validity of CME and shock identification criteria in coronagraph images, we also compute synthetic white light images of the CME and shock. We find that the outer edge of a cloud-like illuminated area in the observed and predicted images in fact coincides with the leading edge of the CME flux rope and that the outer edge of a faint illuminated band in front of the CME leading edge coincides with the CME-driven shock front.

Debris Disks in Aggregate: Using Hubble Space Telescope Coronagraphic Imagery to Understand the Scattered-Light Disk Detection Rate

NASA Technical Reports Server (NTRS)

Grady, Carol A.

2011-01-01

Despite more than a decade of coronagraphic imaging of debris disk candidate stars, only 16 have been imaged in scattered light. Since imaged disks provide our best insight into processes which sculpt disks, and can provide signposts of the presence of giant planets at distances which would elude radial velocity and transit surveys, we need to understand under what conditions we detect the disks in scattered light, how these disks differ from the majority of debris disks, and how to increase the yield of disks which are imaged with 0.1" angular resolution. In this talk, I will review what we have learned from a shallow HSTINICMOS NIR survey of debris disks, and present first results from our on-going HST /STIS optical imaging of bright scattered-light disks.

Coronagraphic Imaging of Debris Disks from a High Altitude Balloon Platform

NASA Technical Reports Server (NTRS)

Unwin, Stephen; Traub, Wesley; Bryden, Geoffrey; Brugarolas, Paul; Chen, Pin; Guyon, Olivier; Hillenbrand, Lynne; Krist, John; Macintosh, Bruce; Mawet, Dimitri;

Forest Fire Finder - DOAS application to long-range forest fire detection

NASA Astrophysics Data System (ADS)

Valente de Almeida, Rui; Vieira, Pedro

2017-06-01

Fires are an important factor in shaping Earth's ecosystems. Plant and animal life, in almost every land habitat, are at least partially dependent on the effects of fire. However, their destructive force, which has often proven uncontrollable, is one of our greatest concerns, effectively resulting in several policies in the most important industrialised regions of the globe. This paper aims to comprehensively characterise the Forest Fire Finder (FFF), a forest fire detection system based mainly upon a spectroscopic technique called differential optical absorption spectroscopy (DOAS). The system is designed and configured with the goal of detecting higher-than-the-horizon smoke columns by measuring and comparing scattered sunlight spectra. The article covers hardware and software, as well as their interactions and specific algorithms for day mode operation. An analysis of data retrieved from several installations deployed in the course of the last 5 years is also presented. Finally, this paper features a discussion on the most prominent future improvements planned for the system, as well as its ramifications and adaptations, such as a thermal imaging system for short-range fire seeking or environmental quality control.

Event and Apparent Horizon Finders for 3 + 1 Numerical Relativity.

PubMed

Thornburg, Jonathan

2007-01-01

Event and apparent horizons are key diagnostics for the presence and properties of black holes. In this article I review numerical algorithms and codes for finding event and apparent horizons in numerically-computed spacetimes, focusing on calculations done using the 3 + 1 ADM formalism. The event horizon of an asymptotically-flat spacetime is the boundary between those events from which a future-pointing null geodesic can reach future null infinity and those events from which no such geodesic exists. The event horizon is a (continuous) null surface in spacetime. The event horizon is defined nonlocally in time : it is a global property of the entire spacetime and must be found in a separate post-processing phase after all (or at least the nonstationary part) of spacetime has been numerically computed. There are three basic algorithms for finding event horizons, based on integrating null geodesics forwards in time, integrating null geodesics backwards in time, and integrating null surfaces backwards in time. The last of these is generally the most efficient and accurate. In contrast to an event horizon, an apparent horizon is defined locally in time in a spacelike slice and depends only on data in that slice, so it can be (and usually is) found during the numerical computation of a spacetime. A marginally outer trapped surface (MOTS) in a slice is a smooth closed 2-surface whose future-pointing outgoing null geodesics have zero expansion Θ. An apparent horizon is then defined as a MOTS not contained in any other MOTS. The MOTS condition is a nonlinear elliptic partial differential equation (PDE) for the surface shape, containing the ADM 3-metric, its spatial derivatives, and the extrinsic curvature as coefficients. Most "apparent horizon" finders actually find MOTSs. There are a large number of apparent horizon finding algorithms, with differing trade-offs between speed, robustness, accuracy, and ease of programming. In axisymmetry, shooting algorithms work well

Simulations of coronagraphy with a dynamic hologram for the direct detection of exo-planets

NASA Astrophysics Data System (ADS)

Ricci, Davide; Le Coroller, Hervé; Labeyrie, Antoine; Piron, Pierre

2010-07-01

In a previous paper,1 we discussed an original solution to improve the performances of coronagraphs by adding, in the optical scheme, an adaptive hologram removing most of the residual speckle starlight. In our simulations, the detection limit in the flux ratio between a host star and a very near planet (5λ/D) improves over a factor 1000 (resp. 10000) when equipped with a hologram for cases of wavefront bumpiness imperfections of λ/20 (resp. λ/100). We derive, in this paper, the transmission accuracy required on the hologram pixels to achieve such goals. We show that preliminary tests could be performed on the basis of existing technologies.

Laboratory and On-sky Validation of the Shaped Pupil Coronagraph’s Sensitivity to Low-order Aberrations With Active Wavefront Control

NASA Astrophysics Data System (ADS)

Currie, Thayne; Kasdin, N. Jeremy; Groff, Tyler D.; Lozi, Julien; Jovanovic, Nemanja; Guyon, Olivier; Brandt, Timothy; Martinache, Frantz; Chilcote, Jeffrey; Skaf, Nour; Kuhn, Jonas; Pathak, Prashant; Kudo, Tomoyuki

2018-04-01

We present early laboratory simulations and extensive on-sky tests validating of the performance of a shaped pupil coronagraph (SPC) behind an extreme-AO corrected beam of the Subaru Coronagraphic Extreme Adaptive Optics (SCExAO) system. In tests with the SCExAO internal source/wavefront error simulator, the normalized intensity profile for the SPC degrades more slowly than for the Lyot coronagraph as low-order aberrations reduce the Strehl ratio from extremely high values (S.R. ∼ 0.93–0.99) to those characteristic of current ground-based extreme AO systems (S.R. ∼ 0.74–0.93) and then slightly lower values down to S.R. ∼ 0.57. On-sky SCExAO data taken with the SPC and other coronagraphs for brown dwarf/planet-hosting stars HD 1160 and HR 8799 provide further evidence for the SPC’s robustness to low-order aberrations. From H-band Strehl ratios of 80% to 70%, the Lyot coronagraph’s performance versus that of the SPC may degrade even faster on sky than is seen in our internal source simulations. The 5-σ contrast also degrades faster (by a factor of two) for the Lyot than the SPC. The SPC we use was designed as a technology demonstrator only, with a contrast floor, throughput, and outer working angle poorly matched for SCExAO’s current AO performance and poorly tuned for imaging the HR 8799 planets. Nevertheless, we detect HR 8799 cde with SCExAO/CHARIS using the SPC in broadband mode, where the S/N for planet e is within 30% of that obtained using the vortex coronagraph. The shaped-pupil coronagraph is a promising design demonstrated to be robust in the presence of low-order aberrations and may be well-suited for future ground and space-based direct imaging observations, especially those focused on follow-up exoplanet characterization and technology demonstration of deep contrast within well-defined regions of the image plane.

Using Voronoi Tessellations to identify groups in N-body Simulation

NASA Astrophysics Data System (ADS)

Gonzalez, R. E.; Theuns, T.

Dark matter N-body simulations often use a friends-of-friends (FOF) group finder to link together particles above a specified density threshold. An over density of 200 picks-out objects that can be identified with virialised dark matter haloes, based on the spherical collapse model for the formation of structure. When the halo contains significant substructure, as is the case in very high resolution simulations, then FOF will simply link all substructure to the parent halo. Many cosmological simulations now also include gas and stars, and these are often distributed differently from the dark matter. It is then not clear whether the structures identified by FOF are very physical. Here we use Voronoi tesselations to identify structures in hydrodynamical cosmological simulations, that contain dark matter, gas and stars. This adaptive technique allows accurate estimates of densities, and density gradients, for a non-structured distribution of points. We discuss how these estimates allow us to identify structures in the dark matter that can be identified with haloes, and in the stars, to identify galaxies.

Human Splicing Finder: an online bioinformatics tool to predict splicing signals.

PubMed

Desmet, François-Olivier; Hamroun, Dalil; Lalande, Marine; Collod-Béroud, Gwenaëlle; Claustres, Mireille; Béroud, Christophe

2009-05-01

Thousands of mutations are identified yearly. Although many directly affect protein expression, an increasing proportion of mutations is now believed to influence mRNA splicing. They mostly affect existing splice sites, but synonymous, non-synonymous or nonsense mutations can also create or disrupt splice sites or auxiliary cis-splicing sequences. To facilitate the analysis of the different mutations, we designed Human Splicing Finder (HSF), a tool to predict the effects of mutations on splicing signals or to identify splicing motifs in any human sequence. It contains all available matrices for auxiliary sequence prediction as well as new ones for binding sites of the 9G8 and Tra2-beta Serine-Arginine proteins and the hnRNP A1 ribonucleoprotein. We also developed new Position Weight Matrices to assess the strength of 5' and 3' splice sites and branch points. We evaluated HSF efficiency using a set of 83 intronic and 35 exonic mutations known to result in splicing defects. We showed that the mutation effect was correctly predicted in almost all cases. HSF could thus represent a valuable resource for research, diagnostic and therapeutic (e.g. therapeutic exon skipping) purposes as well as for global studies, such as the GEN2PHEN European Project or the Human Variome Project.

Human Splicing Finder: an online bioinformatics tool to predict splicing signals

PubMed Central

Desmet, François-Olivier; Hamroun, Dalil; Lalande, Marine; Collod-Béroud, Gwenaëlle; Claustres, Mireille; Béroud, Christophe

2009-01-01

Thousands of mutations are identified yearly. Although many directly affect protein expression, an increasing proportion of mutations is now believed to influence mRNA splicing. They mostly affect existing splice sites, but synonymous, non-synonymous or nonsense mutations can also create or disrupt splice sites or auxiliary cis-splicing sequences. To facilitate the analysis of the different mutations, we designed Human Splicing Finder (HSF), a tool to predict the effects of mutations on splicing signals or to identify splicing motifs in any human sequence. It contains all available matrices for auxiliary sequence prediction as well as new ones for binding sites of the 9G8 and Tra2-β Serine-Arginine proteins and the hnRNP A1 ribonucleoprotein. We also developed new Position Weight Matrices to assess the strength of 5′ and 3′ splice sites and branch points. We evaluated HSF efficiency using a set of 83 intronic and 35 exonic mutations known to result in splicing defects. We showed that the mutation effect was correctly predicted in almost all cases. HSF could thus represent a valuable resource for research, diagnostic and therapeutic (e.g. therapeutic exon skipping) purposes as well as for global studies, such as the GEN2PHEN European Project or the Human Variome Project. PMID:19339519

LOCKYER (Large Optimized Coronagraph for KeY Emission line Research): A SMEX Mission to Provide Crucial Measurements of the Genesis of the Solar Wind and CMEs

NASA Astrophysics Data System (ADS)

Ko, Y. K.; Vourlidas, A.; Korendyke, C.; Laming, J. M.

2016-12-01

The LOCKYER mission is designed to uncover the physical processes of acceleration and heating of the quiescent and transient solar wind. It builds on the success of the Ultraviolet Coronagraph Spectrometer (UVCS) on SOHO with a massive increase in effective area at Lyman-alpha (200x larger than UVCS), thanks to a modern optical design and the use of a 4m boom. The larger effective area enables spectral line observations from many ions, including He II (at 1640 Å), allowing us to access the region where the coronal plasma transitions from fluid to kinetic behavior. In addition, a visible light channel provides simultaneous high-resolution coronagraphic images for the global coronal structure and dynamics creating a greatly-expanded UVCS-LASCO `hybrid' instrument within the tight constraints of a SMEX mission. The LOCKYER mission aims to answer the following questions: 1) What are the physical processes responsible for the heating and acceleration of the primary (proton, electron, helium) and secondary (minor ion) plasma components of the fast and slow solar wind? 2) How are CMEs heated and accelerated? LOCKYER would greatly advance our knowledge of how and where the solar wind is formed, and how the variations in coronal microphysics impact the solar wind and heliosphere. The LOCKYER measurements are highly complementary to the Solar Probe Plus and Solar Orbiter measurements and provide detailed empirical descriptions of the coronal plasma at heights where the primary energy and momentum addition occur.

Development of Measurement Device of Working Radius of Crane Based on Single CCD Camera and Laser Range Finder

NASA Astrophysics Data System (ADS)

Nara, Shunsuke; Takahashi, Satoru

In this paper, what we want to do is to develop an observation device to measure the working radius of a crane truck. The device has a single CCD camera, a laser range finder and two AC servo motors. First, in order to measure the working radius, we need to consider algorithm of a crane hook recognition. Then, we attach the cross mark on the crane hook. Namely, instead of the crane hook, we try to recognize the cross mark. Further, for the observation device, we construct PI control system with an extended Kalman filter to track the moving cross mark. Through experiments, we show the usefulness of our device including new control system of mark tracking.

The Abacus Cosmos: A Suite of Cosmological N-body Simulations

NASA Astrophysics Data System (ADS)

Garrison, Lehman H.; Eisenstein, Daniel J.; Ferrer, Douglas; Tinker, Jeremy L.; Pinto, Philip A.; Weinberg, David H.

2018-06-01

We present a public data release of halo catalogs from a suite of 125 cosmological N-body simulations from the ABACUS project. The simulations span 40 wCDM cosmologies centered on the Planck 2015 cosmology at two mass resolutions, 4 × 1010 h ‑1 M ⊙ and 1 × 1010 h ‑1 M ⊙, in 1.1 h ‑1 Gpc and 720 h ‑1 Mpc boxes, respectively. The boxes are phase-matched to suppress sample variance and isolate cosmology dependence. Additional volume is available via 16 boxes of fixed cosmology and varied phase; a few boxes of single-parameter excursions from Planck 2015 are also provided. Catalogs spanning z = 1.5 to 0.1 are available for friends-of-friends and ROCKSTAR halo finders and include particle subsamples. All data products are available at https://lgarrison.github.io/AbacusCosmos.

HBT+: an improved code for finding subhaloes and building merger trees in cosmological simulations

NASA Astrophysics Data System (ADS)

Han, Jiaxin; Cole, Shaun; Frenk, Carlos S.; Benitez-Llambay, Alejandro; Helly, John

2018-02-01

Dark matter subhalos are the remnants of (incomplete) halo mergers. Identifying them and establishing their evolutionary links in the form of merger trees is one of the most important applications of cosmological simulations. The HBT (Hierachical Bound-Tracing) code identifies haloes as they form and tracks their evolution as they merge, simultaneously detecting subhaloes and building their merger trees. Here we present a new implementation of this approach, HBT+ , that is much faster, more user friendly, and more physically complete than the original code. Applying HBT+ to cosmological simulations, we show that both the subhalo mass function and the peak-mass function are well fitted by similar double-Schechter functions. The ratio between the two is highest at the high-mass end, reflecting the resilience of massive subhaloes that experience substantial dynamical friction but limited tidal stripping. The radial distribution of the most-massive subhaloes is more concentrated than the universal radial distribution of lower mass subhaloes. Subhalo finders that work in configuration space tend to underestimate the masses of massive subhaloes, an effect that is stronger in the host centre. This may explain, at least in part, the excess of massive subhaloes in galaxy cluster centres inferred from recent lensing observations. We demonstrate that the peak-mass function is a powerful diagnostic of merger tree defects, and the merger trees constructed using HBT+ do not suffer from the missing or switched links that tend to afflict merger trees constructed from more conventional halo finders. We make the HBT+ code publicly available.

ProGeRF: Proteome and Genome Repeat Finder Utilizing a Fast Parallel Hash Function

PubMed Central

Moraes, Walas Jhony Lopes; Rodrigues, Thiago de Souza; Bartholomeu, Daniella Castanheira

2015-01-01

Repetitive element sequences are adjacent, repeating patterns, also called motifs, and can be of different lengths; repetitions can involve their exact or approximate copies. They have been widely used as molecular markers in population biology. Given the sizes of sequenced genomes, various bioinformatics tools have been developed for the extraction of repetitive elements from DNA sequences. However, currently available tools do not provide options for identifying repetitive elements in the genome or proteome, displaying a user-friendly web interface, and performing-exhaustive searches. ProGeRF is a web site for extracting repetitive regions from genome and proteome sequences. It was designed to be efficient, fast, and accurate and primarily user-friendly web tool allowing many ways to view and analyse the results. ProGeRF (Proteome and Genome Repeat Finder) is freely available as a stand-alone program, from which the users can download the source code, and as a web tool. It was developed using the hash table approach to extract perfect and imperfect repetitive regions in a (multi)FASTA file, while allowing a linear time complexity. PMID:25811026

Surging Seas Risk Finder: A Simple Search-Based Web Tool for Local Sea Level Rise Projections, Coastal Flood Risk Forecasts, and Inundation Exposure Analysis

NASA Astrophysics Data System (ADS)

Strauss, B.; Dodson, D.; Kulp, S. A.; Rizza, D. H.

2016-12-01

Surging Seas Risk Finder (riskfinder.org) is an online tool for accessing extensive local projections and analysis of sea level rise; coastal floods; and land, populations, contamination sources, and infrastructure and other assets that may be exposed to inundation. Risk Finder was first published in 2013 for Florida, New York and New Jersey, expanding to all states in the contiguous U.S. by 2016, when a major new version of the tool was released with a completely new interface. The revised tool was informed by hundreds of survey responses from and conversations with planners, local officials and other coastal stakeholders, plus consideration of modern best practices for responsive web design and user interfaces, and social science-based principles for science communication. Overarching design principles include simplicity and ease of navigation, leading to a landing page with Google-like sparsity and focus on search, and to an architecture based on search, so that each coastal zip code, city, county, state or other place type has its own webpage gathering all relevant analysis in modular, scrollable units. Millions of users have visited the Surging Seas suite of tools to date, and downloaded thousands of files, for stated purposes ranging from planning to business to education to personal decisions; and from institutions ranging from local to federal government agencies, to businesses, to NGOs, and to academia.

High-Voltage Clock Driver for Photon-Counting CCD Characterization

NASA Technical Reports Server (NTRS)

Baker, Robert

2013-01-01

A document discusses the CCD97 from e2v technologies as it is being evaluated at Goddard Space Flight Center's Detector Characterization Laboratory (DCL) for possible use in ultra-low background noise space astronomy applications, such as Terrestrial Planet Finder Coronagraph (TPF-C). The CCD97 includes a photoncounting mode where the equivalent output noise is less than one electron. Use of this mode requires a clock signal at a voltage level greater than the level achievable by the existing CCD (charge-coupled-device) electronics. A high-voltage waveform generator has been developed in code 660/601 to support the CCD97 evaluation. The unit generates required clock waveforms at voltage levels from -20 to +50 V. It deals with standard and arbitrary waveforms and supports pixel rates from 50 to 500 kHz. The system is designed to interface with existing Leach CCD electronics.

Optical Coronagraphic Spectroscopy of AU Mic: Evidence of Time Variable Colors?

NASA Astrophysics Data System (ADS)

Lomax, Jamie R.; Wisniewski, John P.; Roberge, Aki; Donaldson, Jessica K.; Debes, John H.; Malumuth, Eliot M.; Weinberger, Alycia J.

2018-02-01

We present coronagraphic long slit spectra of AU Mic’s debris disk taken with the STIS instrument aboard the Hubble Space Telescope. Our spectra are the first spatially-resolved, scattered light spectra of the system’s disk, which we detect at projected distances between approximately 10 and 45 au. Our spectra cover a wavelength range between 5200 and 10200 Å. We find that the color of AU Mic’s debris disk is bluest at small (12–17 au) projected separations. These results both confirm and quantify the findings qualitatively noted by Krist et al. and are different than IR observations that suggested a uniform blue or gray color as a function of projected separation in this region of the disk. Unlike previous literature, which reported that the color of AU Mic’s disk became increasingly more blue as a function of projected separation beyond ∼30 au, we find the disk’s optical color between 35 and 45 au to be uniformly blue on the southeast side of the disk and decreasingly blue on the northwest side. We note that this apparent change in disk color at larger projected separations coincides with several fast, outward moving “features” that are passing through this region of the southeast side of the disk. We speculate that these phenomenon might be related and that the fast moving features could be changing the localized distribution of sub-micron-sized grains as they pass by, thereby reducing the blue color of the disk in the process. We encourage follow-up optical spectroscopic observations of AU Mic to both confirm this result and search for further modifications of the disk color caused by additional fast moving features propagating through the disk.

A Case Study in High Contrast Coronagraph for Planet Discovery: The Eclipse Concept and Support Laboratory Experience

NASA Technical Reports Server (NTRS)

Trauger, John T.

2005-01-01

Eclipse is a proposed NASA Discovery mission to perform a sensitive imaging survey of nearby planetary systems, including a survey for jovian-sized planets orbiting Sun-like stars to distances of 15 pc. We outline the science objectives of the Eclipse mission and review recent developments in the key enabling technologies. Eclipse is a space telescope concept for high-contrast visible-wavelength imaging and spectrophotometry. Its design incorporates a telescope with an unobscured aperture of 1.8 meters, a coronographic camera for suppression of diffracted light, and precise active wavefront correction for the suppression of scattered background light. For reference, Eclipse is designed to reduce the diffracted and scattered starlight between 0.33 and 1.5 arcseconds from the star by three orders of magnitude compared to any HST instrument. The Eclipse mission provides precursor science exploration and technology experience in support of NASA's Terrestrial Planet Finder (TPF) program.

Factors Influencing Depression Endpoints Research (FINDER): baseline results of Italian patients with depression

PubMed Central

Grassi, Luigi; Rossi, Andrea; Barraco, Alessandra

2009-01-01

Background Factors Influencing Depression Endpoints Research (FINDER) is a 6-month, prospective, observational study carried out in 12 European countries aimed at investigating health-related quality of life (HRQoL) in outpatients receiving pharmacological treatment for a first or new depressive episode. Baseline characteristics of patients enrolled in Italy are presented. Methods All treatment decisions were at the discretion of the investigator. Data were collected at baseline and after 3 and 6 months of treatment. Baseline evaluations included demographics, medical and psychiatric history, and medications used in the last 24 months and prescribed at enrolment. The Hospital Anxiety and Depression Scale (HADS), was adopted to evaluate depressive symptoms, while somatic and painful physical symptoms were assessed by using the Somatic Symptom Inventory (SSI) and a 0 to 100 mm visual analogue scale (VAS), HRQoL via 36-item Short Form Health Survey (SF-36), and the European Quality of Life 5-Dimensions (EQ-5D) instrument. Results A total of 513 patients were recruited across 38 sites. The mean ± standard deviation (SD) age at first depressive episode was 38.7 ± 15.9 years, the mean duration of depression 10.6 ± 12.3 years. The most common psychiatric comorbidities in the previous 24 months were anxiety/panic (72.6%) and obsessive/compulsive disorders (13.4%), while 35.9% had functional somatic syndromes. Most patients (65.1%) reported pain from any cause. Monotherapy with selective serotonin reuptake inhibitors (SSRIs) and tricyclic antidepressants (TCAs) was prescribed at enrolment in 64.5% and 6.4% of the cases, respectively. The most commonly prescribed agents were sertraline (17.3%), escitalopram (16.2%), venlaflaxine (15.6%) and paroxetine (14.8%). The mean HADS subscores for depression and anxiety were 13.3 ± 4.2 and 12.2 ± 3.9, respectively; 76.4% of patients could be defined as being 'probable cases' for depression and 66.2% for anxiety. The mean total

The three-dimensional analysis of hinode polar jets using images from LASCO C2, the STEREO COR2 coronagraphs, and SMEI

DOE Office of Scientific and Technical Information (OSTI.GOV)

Yu, H.-S.; Jackson, B. V.; Buffington, A.

2014-04-01

Images recorded by the X-ray Telescope on board the Hinode spacecraft are used to provide high-cadence observations of solar jetting activity. A selection of the brightest of these polar jets shows a positive correlation with high-speed responses traced into the interplanetary medium. LASCO C2 and STEREO COR2 coronagraph images measure the coronal response to some of the largest jets, and also the nearby background solar wind velocity, thereby giving a determination of their speeds that we compare with Hinode observations. When using the full Solar Mass Ejection Imager (SMEI) data set, we track these same high-speed solar jet responses intomore » the inner heliosphere and from these analyses determine their mass, flow energies, and the extent to which they retain their identity at large solar distances.« less

Analyzing and Visualizing Cosmological Simulations with ParaView

NASA Astrophysics Data System (ADS)

Woodring, Jonathan; Heitmann, Katrin; Ahrens, James; Fasel, Patricia; Hsu, Chung-Hsing; Habib, Salman; Pope, Adrian

2011-07-01

The advent of large cosmological sky surveys—ushering in the era of precision cosmology—has been accompanied by ever larger cosmological simulations. The analysis of these simulations, which currently encompass tens of billions of particles and up to a trillion particles in the near future, is often as daunting as carrying out the simulations in the first place. Therefore, the development of very efficient analysis tools combining qualitative and quantitative capabilities is a matter of some urgency. In this paper, we introduce new analysis features implemented within ParaView, a fully parallel, open-source visualization toolkit, to analyze large N-body simulations. A major aspect of ParaView is that it can live and operate on the same machines and utilize the same parallel power as the simulation codes themselves. In addition, data movement is in a serious bottleneck now and will become even more of an issue in the future; an interactive visualization and analysis tool that can handle data in situ is fast becoming essential. The new features in ParaView include particle readers and a very efficient halo finder that identifies friends-of-friends halos and determines common halo properties, including spherical overdensity properties. In combination with many other functionalities already existing within ParaView, such as histogram routines or interfaces to programming languages like Python, this enhanced version enables fast, interactive, and convenient analyses of large cosmological simulations. In addition, development paths are available for future extensions.

The instrument control software package for the Habitable-Zone Planet Finder spectrometer

NASA Astrophysics Data System (ADS)

Bender, Chad F.; Robertson, Paul; Stefansson, Gudmundur Kari; Monson, Andrew; Anderson, Tyler; Halverson, Samuel; Hearty, Frederick; Levi, Eric; Mahadevan, Suvrath; Nelson, Matthew; Ramsey, Larry; Roy, Arpita; Schwab, Christian; Shetrone, Matthew; Terrien, Ryan

2016-08-01

We describe the Instrument Control Software (ICS) package that we have built for The Habitable-Zone Planet Finder (HPF) spectrometer. The ICS controls and monitors instrument subsystems, facilitates communication with the Hobby-Eberly Telescope facility, and provides user interfaces for observers and telescope operators. The backend is built around the asynchronous network software stack provided by the Python Twisted engine, and is linked to a suite of custom hardware communication protocols. This backend is accessed through Python-based command-line and PyQt graphical frontends. In this paper we describe several of the customized subsystem communication protocols that provide access to and help maintain the hardware systems that comprise HPF, and show how asynchronous communication benefits the numerous hardware components. We also discuss our Detector Control Subsystem, built as a set of custom Python wrappers around a C-library that provides native Linux access to the SIDECAR ASIC and Hawaii-2RG detector system used by HPF. HPF will be one of the first astronomical instruments on sky to utilize this native Linux capability through the SIDECAR Acquisition Module (SAM) electronics. The ICS we have created is very flexible, and we are adapting it for NEID, NASA's Extreme Precision Doppler Spectrometer for the WIYN telescope; we will describe this adaptation, and describe the potential for use in other astronomical instruments.

Optical tolerances for the PICTURE-C mission: error budget for electric field conjugation, beam walk, surface scatter, and polarization aberration

NASA Astrophysics Data System (ADS)

Mendillo, Christopher B.; Howe, Glenn A.; Hewawasam, Kuravi; Martel, Jason; Finn, Susanna C.; Cook, Timothy A.; Chakrabarti, Supriya

2017-09-01

The Planetary Imaging Concept Testbed Using a Recoverable Experiment - Coronagraph (PICTURE-C) mission will directly image debris disks and exozodiacal dust around nearby stars from a high-altitude balloon using a vector vortex coronagraph. Four leakage sources owing to the optical fabrication tolerances and optical coatings are: electric field conjugation (EFC) residuals, beam walk on the secondary and tertiary mirrors, optical surface scattering, and polarization aberration. Simulations and analysis of these four leakage sources for the PICTUREC optical design are presented here.

Linear dark field control: simulation for implementation and testing on the UA wavefront control testbed

NASA Astrophysics Data System (ADS)

Miller, Kelsey; Guyon, Olivier

2016-07-01

This paper presents the early-stage simulation results of linear dark field control (LDFC) as a new approach to maintaining a stable dark hole within a stellar post-coronagraphic PSF. In practice, conventional speckle nulling is used to create a dark hole in the PSF, and LDFC is then employed to maintain the dark field by using information from the bright speckle field. The concept exploits the linear response of the bright speckle intensity to wavefront variations in the pupil, and therefore has many advantages over conventional speckle nulling as a method for stabilizing the dark hole. In theory, LDFC is faster, more sensitive, and more robust than using conventional speckle nulling techniques, like electric field conjugation, to maintain the dark hole. In this paper, LDFC theory, linear bright speckle characterization, and first results in simulation are presented as an initial step toward the deployment of LDFC on the UA Wavefront Control testbed in the coming year.

P-Finder: Reconstruction of Signaling Networks from Protein-Protein Interactions and GO Annotations.

PubMed

Young-Rae Cho; Yanan Xin; Speegle, Greg

2015-01-01

Because most complex genetic diseases are caused by defects of cell signaling, illuminating a signaling cascade is essential for understanding their mechanisms. We present three novel computational algorithms to reconstruct signaling networks between a starting protein and an ending protein using genome-wide protein-protein interaction (PPI) networks and gene ontology (GO) annotation data. A signaling network is represented as a directed acyclic graph in a merged form of multiple linear pathways. An advanced semantic similarity metric is applied for weighting PPIs as the preprocessing of all three methods. The first algorithm repeatedly extends the list of nodes based on path frequency towards an ending protein. The second algorithm repeatedly appends edges based on the occurrence of network motifs which indicate the link patterns more frequently appearing in a PPI network than in a random graph. The last algorithm uses the information propagation technique which iteratively updates edge orientations based on the path strength and merges the selected directed edges. Our experimental results demonstrate that the proposed algorithms achieve higher accuracy than previous methods when they are tested on well-studied pathways of S. cerevisiae. Furthermore, we introduce an interactive web application tool, called P-Finder, to visualize reconstructed signaling networks.

Wavefront error measurement of the concave ellipsoidal mirrors of the METIS coronagraph on ESA Solar Orbiter mission

NASA Astrophysics Data System (ADS)

Sandri, P.

2017-12-01

The paper describes the alignment technique developed for the wavefront error measurement of ellipsoidal mirrors presenting a central hole. The achievement of a good alignment with a classic setup at the finite conjugates when mirrors are uncoated cannot be based on the identification and materialization at naked eye of the retro-reflected spot by the mirror under test as the intensity of the retro-reflected spot results to be ≈1E-3 of the intensity of the injected laser beam of the interferometer. We present the technique developed for the achievement of an accurate alignment in the setup at the finite conjugate even in condition of low intensity based on the use of an autocollimator adjustable in focus position and a small polished flat surface on the rear side of the mirror. The technique for the alignment has successfully been used for the optical test of the concave ellipsoidal mirrors of the METIS coronagraph of the ESA Solar Orbiter mission. The presented method results to be advantageous in terms of precision and of time saving also when the mirrors are reflective coated and integrated into their mechanical hardware.

Factoring local sequence composition in motif significance analysis.

PubMed

Ng, Patrick; Keich, Uri

2008-01-01

We recently introduced a biologically realistic and reliable significance analysis of the output of a popular class of motif finders. In this paper we further improve our significance analysis by incorporating local base composition information. Relying on realistic biological data simulation, as well as on FDR analysis applied to real data, we show that our method is significantly better than the increasingly popular practice of using the normal approximation to estimate the significance of a finder's output. Finally we turn to leveraging our reliable significance analysis to improve the actual motif finding task. Specifically, endowing a variant of the Gibbs Sampler with our improved significance analysis we demonstrate that de novo finders can perform better than has been perceived. Significantly, our new variant outperforms all the finders reviewed in a recently published comprehensive analysis of the Harbison genome-wide binding location data. Interestingly, many of these finders incorporate additional information such as nucleosome positioning and the significance of binding data.

Distributed Computing Architecture for Image-Based Wavefront Sensing and 2 D FFTs

NASA Technical Reports Server (NTRS)

Smith, Jeffrey S.; Dean, Bruce H.; Haghani, Shadan

2006-01-01

Image-based wavefront sensing (WFS) provides significant advantages over interferometric-based wavefi-ont sensors such as optical design simplicity and stability. However, the image-based approach is computational intensive, and therefore, specialized high-performance computing architectures are required in applications utilizing the image-based approach. The development and testing of these high-performance computing architectures are essential to such missions as James Webb Space Telescope (JWST), Terrestial Planet Finder-Coronagraph (TPF-C and CorSpec), and Spherical Primary Optical Telescope (SPOT). The development of these specialized computing architectures require numerous two-dimensional Fourier Transforms, which necessitate an all-to-all communication when applied on a distributed computational architecture. Several solutions for distributed computing are presented with an emphasis on a 64 Node cluster of DSPs, multiple DSP FPGAs, and an application of low-diameter graph theory. Timing results and performance analysis will be presented. The solutions offered could be applied to other all-to-all communication and scientifically computationally complex problems.

Enceladus Life Finder: Search for Life in a Habitable Moon.

NASA Astrophysics Data System (ADS)

Lunine, J. I.; Waite, J. H., Jr.; Spilker, L. J.; Postberg, F.; Cable, M. L.; Srama, R.; Clark, K.; Lee, S. W.

2015-12-01

A thousand times smaller in mass than Ganymede, Enceladus was known from Voyager data to be extremely bright and a dearth of craters on some parts of its surface suggested geologic activity. Cassini discovered the presence and composition of a plume erupting from the south polar terrain of Enceladus, approximately 100 narrow, distinct "geysers" or "jets" that feed it, and anomalous thermal signatures along fractures from which the geysers erupt. Cassini discovered organic and nitrogen-bearing molecules in the plume vapor, and detected salts in the plume icy grains, arguing strongly for ocean water being in contact with a rocky core. As much as Cassini has done, it cannot tell us whether the ocean of Enceladus hosts an active biota today. Enceladus Life Finder (ELF) is a Discovery-class solar-powered Saturn orbiter designed to fly multiple times through the plume of Enceladus. It carries two state-of-the-art mass spectrometers designed to analyze the gas and grains in the plume. The goals of the mission are derived directly from the most recent decadal survey: first, to determine primordial sources of organics and sites of organic synthesis today, second, to determine if there are modern habitats in the solar system beyond Earth where the conditions for life exist today and third, if life exists there now. ELF conducts three tests for life. The first test looks for a non-abiotic distribution of amino acids, the second determines whether the carbon number distribution in fatty acids or isoprenoids is biased toward a particular rule, and the third measures carbon and hydrogen isotopic ratios, together with the abundance of methane relative to other alkanes, to assess whether the values fall in the range for biological processes. The ELF mission spacecraft conducts ten science plume fly-throughs; the baseline science is completed in the first five plume passages.

Patch Finder Plus (PFplus): a web server for extracting and displaying positive electrostatic patches on protein surfaces.

PubMed

Shazman, Shula; Celniker, Gershon; Haber, Omer; Glaser, Fabian; Mandel-Gutfreund, Yael

2007-07-01

Positively charged electrostatic patches on protein surfaces are usually indicative of nucleic acid binding interfaces. Interestingly, many proteins which are not involved in nucleic acid binding possess large positive patches on their surface as well. In some cases, the positive patches on the protein are related to other functional properties of the protein family. PatchFinderPlus (PFplus) http://pfp.technion.ac.il is a web-based tool for extracting and displaying continuous electrostatic positive patches on protein surfaces. The input required for PFplus is either a four letter PDB code or a protein coordinate file in PDB format, provided by the user. PFplus computes the continuum electrostatics potential and extracts the largest positive patch for each protein chain in the PDB file. The server provides an output file in PDB format including a list of the patch residues. In addition, the largest positive patch is displayed on the server by a graphical viewer (Jmol), using a simple color coding.

Patch Finder Plus (PFplus): A web server for extracting and displaying positive electrostatic patches on protein surfaces

PubMed Central

Shazman, Shula; Celniker, Gershon; Haber, Omer; Glaser, Fabian; Mandel-Gutfreund, Yael

2007-01-01

Positively charged electrostatic patches on protein surfaces are usually indicative of nucleic acid binding interfaces. Interestingly, many proteins which are not involved in nucleic acid binding possess large positive patches on their surface as well. In some cases, the positive patches on the protein are related to other functional properties of the protein family. PatchFinderPlus (PFplus) http://pfp.technion.ac.il is a web-based tool for extracting and displaying continuous electrostatic positive patches on protein surfaces. The input required for PFplus is either a four letter PDB code or a protein coordinate file in PDB format, provided by the user. PFplus computes the continuum electrostatics potential and extracts the largest positive patch for each protein chain in the PDB file. The server provides an output file in PDB format including a list of the patch residues. In addition, the largest positive patch is displayed on the server by a graphical viewer (Jmol), using a simple color coding. PMID:17537808

DOE Office of Scientific and Technical Information (OSTI.GOV)

Behroozi, Peter S.; Wechsler, Risa H.; Wu, Hao-Yi

We present a new algorithm for generating merger trees and halo catalogs which explicitly ensures consistency of halo properties (mass, position, and velocity) across time steps. Our algorithm has demonstrated the ability to improve both the completeness (through detecting and inserting otherwise missing halos) and purity (through detecting and removing spurious objects) of both merger trees and halo catalogs. In addition, our method is able to robustly measure the self-consistency of halo finders; it is the first to directly measure the uncertainties in halo positions, halo velocities, and the halo mass function for a given halo finder based on consistencymore » between snapshots in cosmological simulations. We use this algorithm to generate merger trees for two large simulations (Bolshoi and Consuelo) and evaluate two halo finders (ROCKSTAR and BDM). We find that both the ROCKSTAR and BDM halo finders track halos extremely well; in both, the number of halos which do not have physically consistent progenitors is at the 1%-2% level across all halo masses. Our code is publicly available at http://code.google.com/p/consistent-trees. Our trees and catalogs are publicly available at http://hipacc.ucsc.edu/Bolshoi/.« less

Scrambling and modal noise mitigation in the Habitable Zone Planet Finder fiber feed

NASA Astrophysics Data System (ADS)

Roy, Arpita; Halverson, Samuel; Mahadevan, Suvrath; Ramsey, Lawrence W.

2014-07-01

We present the baseline fiber feed design for the Habitable-zone Planet Finder (HPF), a precision radial velocity (RV) spectrograph designed to detect Earth analogs around M-dwarfs. HPF is a stabilized, fiber-fed, R˜50,000 spectrograph operating in the near-infrared (NIR) from 0.82 to 1.3 µm, and will be deployed on the Hobby- Eberly Telescope (HET) in Texas. While the essential function of the optical fibers is to deliver high throughput, this mode of light transport also provides the opportunity to introduce radial and azimuthal scrambling, which boosts instrument stability and thereby RV precision. Based on the unique requirements of HPF on the HET, we present initial tests showing very high scrambling gains via a compact scrambler in conjunction with octagonal fibers. Conversely, the propagation of light through the fibers injects modal noise, which can limit achievable RV precision. Laboratory tests of a custom-built mechanical agitator show significant gains over a static fiber feed. Overall, the fiber feed is designed to provide high relative throughput, excellent scrambling, and reliable modal noise suppression. We will also attempt to minimize focal ratio degradation (FRD) to the extent possible with the chosen configuration. HPF inculcates several other new technologies developed by the Penn State Optical-Infrared instrumentation group, including a rigorous calibration system, which are discussed separately in these proceedings.

Automatic Near-Real-Time Detection of CMEs in Mauna Loa K-Cor Coronagraph Images

NASA Astrophysics Data System (ADS)

Thompson, W. T.; St. Cyr, O. C.; Burkepile, J. T.; Posner, A.

2017-10-01

A simple algorithm has been developed to detect the onset of coronal mass ejections (CMEs), together with speed estimates, in near-real time using linearly polarized white-light solar coronal images from the Mauna Loa Solar Observatory K-Cor telescope. Ground observations in the low corona can warn of CMEs well before they appear in space coronagraphs. The algorithm used is a variation on the Solar Eruptive Event Detection System developed at George Mason University. It was tested against K-Cor data taken between 29 April 2014 and 20 February 2017, on days identified as containing CMEs. This resulted in testing of 139 days' worth of data containing 171 CMEs. The detection rate varied from close to 80% when solar activity was high down to as low as 20-30% when activity was low. The difference in effectiveness with solar cycle is attributed to the relative prevalence of strong CMEs between active and quiet periods. There were also 12 false detections, leading to an average false detection rate of 8.6%. The K-Cor data were also compared with major solar energetic particle (SEP) storms during this time period. There were three SEP events detected either at Earth or at one of the two STEREO spacecraft when K-Cor was observing during the relevant time period. The algorithm successfully generated alerts for two of these events, with lead times of 1-3 h before the SEP onset at 1 AU. The third event was not detected by the automatic algorithm because of the unusually broad width in position angle.

CME Simulations with Boundary Conditions Derived from Multiple Viewpoints of STEREO

NASA Astrophysics Data System (ADS)

Singh, T.; Yalim, M. S.; Pogorelov, N. V.

2017-12-01

Coronal Mass Ejections (CMEs) are major drivers of extreme space weather conditions, which is a matter of huge concern for our modern technologically dependent society. Development of numerical approaches that would reproduce CME propagation through the interplanetary space is an important step towards our capability to predict CME arrival time at Earth and their geo-effectiveness. It is also important that CMEs are propagating through a realistic, data-driven background solar wind (SW). In this study, we use a version of the flux-rope-driven Gibson-Low (GL) model to simulate CMEs. We derive inner boundary conditions for the GL flux rope model using the Graduate Cylindrical Shell (GCS) method. This method uses viewpoints from STEREO A and B, and SOHO/LASCO coronagraphs to determine the size and orientation of a CME flux rope as it starts to erupt from Sun. A flux rope created this way is inserted into an SDO/HMI vector magnetogram driven SW background obtained with the Multi-Scale Fluid-Kinetic Simulation Suite (MS-FLUKSS). Numerical results are compared with STEREO, SDO/AIA and SOHO/LASCO observations in particular in terms of the CME speed, acceleration and magnetic field structure.

The Habitability of Enceladus from Cassini and Enceladus Life Finder as the Next Step

NASA Astrophysics Data System (ADS)

Spilker, L. J.; Lunine, J. I.

2016-12-01

Enceladus is a tiny moon circling Saturn. Through Cassini's discoveries we now know that it has a global, geologically long-lived salt-water ocean inside, in contact with the silicate core, at which interface there is moderate-temperature hydrothermal activity perhaps akin to the Lost City vent structure on Earth's seafloor, which hosts a rich ecology. The ocean water, containing nanosilica grains from the hydrothermal vents, and large organic molecules not yet identified, is expressed directly and continuously into space via fissures in Enceladus' south polar region. Cassini has analyzed the composition of ice grains and gas by repeatedly flying through this plume on multiple flybys, so now we know how to detect unmistakable signs of ocean life with modern instruments on a subsequent mission. This makes Enceladus a natural laboratory for understanding how life - carbon- and water-based but not sharing Earth life's origin -arose. To do so quickly without waiting for the next Flagship opportunity requires a focussed mission that applies the most focussed and robust analytic techniques on the most easily accessed samples of the ocean—the plume itself. Enceladus Life Finder (ELF) was proposed to do just this, and we describe why a graceful, elvish approach to life detection is optimal.

Estimate Low and High Order Wavefront Using P1640 Calibrator Measurements

NASA Technical Reports Server (NTRS)

Zhai, C.; Vasisht, G.; Shao, M.; Lockhart, T.; Cady, E.; Oppenheimer, B.; Burruss, R.; Roberts, J.; Beichman, C.; Brenner, D.;

Latest Results From the QuakeFinder Statistical Analysis Framework

NASA Astrophysics Data System (ADS)

Kappler, K. N.; MacLean, L. S.; Schneider, D.; Bleier, T.

2017-12-01

Since 2005 QuakeFinder (QF) has acquired an unique dataset with outstanding spatial and temporal sampling of earth's magnetic field along several active fault systems. This QF network consists of 124 stations in California and 45 stations along fault zones in Greece, Taiwan, Peru, Chile and Indonesia. Each station is equipped with three feedback induction magnetometers, two ion sensors, a 4 Hz geophone, a temperature sensor, and a humidity sensor. Data are continuously recorded at 50 Hz with GPS timing and transmitted daily to the QF data center in California for analysis. QF is attempting to detect and characterize anomalous EM activity occurring ahead of earthquakes. There have been many reports of anomalous variations in the earth's magnetic field preceding earthquakes. Specifically, several authors have drawn attention to apparent anomalous pulsations seen preceding earthquakes. Often studies in long term monitoring of seismic activity are limited by availability of event data. It is particularly difficult to acquire a large dataset for rigorous statistical analyses of the magnetic field near earthquake epicenters because large events are relatively rare. Since QF has acquired hundreds of earthquakes in more than 70 TB of data, we developed an automated approach for finding statistical significance of precursory behavior and developed an algorithm framework. Previously QF reported on the development of an Algorithmic Framework for data processing and hypothesis testing. The particular instance of algorithm we discuss identifies and counts magnetic variations from time series data and ranks each station-day according to the aggregate number of pulses in a time window preceding the day in question. If the hypothesis is true that magnetic field activity increases over some time interval preceding earthquakes, this should reveal itself by the station-days on which earthquakes occur receiving higher ranks than they would if the ranking scheme were random. This can

AsteroidFinder - the space-borne telescope to search for NEO Asteroids

NASA Astrophysics Data System (ADS)

Hartl, M.; Mosebach, H.; Schubert, J.; Michaelis, H.; Mottola, S.; Kührt, E.; Schindler, K.

2017-11-01

This paper presents the mission profile as well as the optical configuration of the space-borne AsteroidFinder telescope. Its main objective is to retrieve asteroids with orbits interior to the earth's orbit. The instrument requires high sensitivity to detect asteroids with a limiting magnitude of equal or larger than 18.5mag (V-Band) and astrometric accuracy of 1arcsec (1σ). This requires a telescope aperture greater than 400cm2, high image stability, detector with high quantum efficiency (peak > 90%) and very low noise, which is only limited by zodiacal background. The telescope will observe the sky between 30° and 60° in solar elongation. The telescope optics is based on a Cook type TMA. An effective 2°×2° field of view (FOV) is achieved by a fast F/3.4 telescope with near diffraction-limited performance. The absence of centre obscuration or spiders in combination with an accessible intermediate field plane and exit pupil allow for efficient stray light mitigation. Design drivers for the telescope are the required point spread function (PSF) values, an extremely efficient stray light suppression (due to the magnitude requirement mentioned above), the detector performance, and the overall optical and mechanical stability for all orientations of the satellite. To accommodate the passive thermal stabilization scheme and the necessary structural stability, the materials selection for the telescope main structure and the mirrors are of vital importance. A focal plane with four EMCCD detectors is envisaged. The EMCCD technology features shorter integration times, which is in favor regarding the pointing performance of the satellite. The launch of the mission is foreseen for the year 2013 with a subsequent mission lifetime of at least 1 year.

NICMOS Coronagraphic Imaging of a Circumstellar Disk around the T Tauri Star GM Aurigae

NASA Astrophysics Data System (ADS)

Koerner, D. W.; Schneider, G.; Smith, B. A.; Becklin, E. E.; Hines, D. C.; Kirkpatrick, J. D.; Lowrance, P. J.; Meier, R.; Reike, M.; Terrile, R. J.; Thompson, R. I.; NICMOS/IDT EONS Teams

1998-12-01

We have carried out a coronagraphic imaging study of circumstellar disk candidates as part of NICMOS IDT investigations of the environments of nearby stars. Here we present images of circumstellar nebulosity around the classical T Tauri star, GM Aurigae, at lambda = 1.1 and 1.6 mu m. The emission extends beyond 2.8'' (450 AU) from the star with brightness falling off radially as R(-2.5) . The flux ratio between the two wavelengths differs little from that expected for a K5 star like GM Aur, suggesting that scattering grains include a substantial population with sizes larger than 1 mu m. Preliminary modeling of the emission confirms its origin in stellar light reflected off the surface of a flared circumstellar disk and indicates an inclination 60(deg) from face on. These results agree well with the appearance of CO(2->1) emission in aperture synthesis images from the Owens Valley Millimeter Array, and with the morphology of optical nebulosity in psf-subtracted exposures taken by the WFPC2 science team. Further, the high-resolution constraint on size and orientation enables a definitive interpretation of the velocity structure from kinematic modeling of CO(2->1) images at lower resolution: it is demonstrated unequivocally that the gas is centrifugally supported and in Keplerian rotation within the confines of a disk centered on the star. This work is supported by NASA grant NAG 5-3042, and based on observations with the NASA/ESA Hubble Space Telescope, obtained at the Space Telescope Science Institute, which is operated by the Association of Universities for Research in Astronomy, Inc. under NASA contract NAS5-26555.

High-contrast imaging in multi-star systems: progress in technology development and lab results

NASA Astrophysics Data System (ADS)

Belikov, Ruslan; Pluzhnik, Eugene; Bendek, Eduardo; Sirbu, Dan

2017-09-01

We present the continued progress and laboratory results advancing the technology readiness of Multi-Star Wavefront Control (MSWC), a method to directly image planets and disks in multi-star systems such as Alpha Centauri. This method works with almost any coronagraph (or external occulter with a DM) and requires little or no change to existing and mature hardware. In particular, it works with single-star coronagraphs and does not require the off-axis star(s) to be coronagraphically suppressed. Because of the ubiquity of multistar systems, this method increases the science yield of many missions and concepts such as WFIRST, Exo-C/S, HabEx, LUVOIR, and potentially enables the detection of Earthlike planets (if they exist) around our nearest neighbor star, Alpha Centauri, with a small and low-cost space telescope such as ACESat. Our lab demonstrations were conducted at the Ames Coronagraph Experiment (ACE) laboratory and show both the feasibility as well as the trade-offs involved in using MSWC. We show several simulations and laboratory tests at roughly TRL-3 corresponding to representative targets and missions, including Alpha Centauri with WFIRST. In particular, we demonstrate MSWC in Super-Nyquist mode, where the distance between the desired dark zone and the off-axis star is larger than the conventional (sub-Nyquist) control range of the DM. Our laboratory tests did not yet include a coronagraph, but did demonstrate significant speckle suppression from two independent light sources at sub- as well as super-Nyquist separations.

Reconnection-Driven Magnetohydrodynamic Turbulence in a Simulated Coronal-Hole Jet

NASA Technical Reports Server (NTRS)

Uritskiy, Vadim M.; Roberts, Merrill A.; DeVore, C. Richard; Karpen, Judith T.

2017-01-01

Extreme-ultraviolet and X-ray jets occur frequently in magnetically open coronal holes on the Sun, especially at high solar latitudes. Some of these jets are observed by white-light coronagraphs as they propagate through the outer corona toward the inner heliosphere, and it has been proposed that they give rise to microstreams and torsional Alfven waves detected in situ in the solar wind. To predict and understand the signatures of coronal-hole jets, we have performed a detailed statistical analysis of such a jet simulated with an adaptively refined magnetohydrodynamics model. The results confirm the generation and persistence of three-dimensional, reconnection-driven magnetic turbulence in the simulation. We calculate the spatial correlations of magnetic fluctuations within the jet and find that they agree best with the Meuller - Biskamp scaling model including intermittent current sheets of various sizes coupled via hydrodynamic turbulent cascade. The anisotropy of the magnetic fluctuations and the spatial orientation of the current sheets are consistent with an ensemble of nonlinear Alfven waves. These properties also reflect the overall collimated jet structure imposed by the geometry of the reconnecting magnetic field. A comparison with Ulysses observations shows that turbulence in the jet wake is in quantitative agreement with that in the fast solar wind.

Recognition of flow in everyday life using sensor agent robot with laser range finder

NASA Astrophysics Data System (ADS)

Goshima, Misa; Mita, Akira

2011-04-01

In the present paper, we suggest an algorithm for a sensor agent robot with a laser range finder to recognize the flows of residents in the living spaces in order to achieve flow recognition in the living spaces, recognition of the number of people in spaces, and the classification of the flows. House reform is or will be demanded to prolong the lifetime of the home. Adaption for the individuals is needed for our aging society which is growing at a rapid pace. Home autonomous mobile robots will become popular in the future for aged people to assist them in various situations. Therefore we have to collect various type of information of human and living spaces. However, a penetration in personal privacy must be avoided. It is essential to recognize flows in everyday life in order to assist house reforms and aging societies in terms of adaption for the individuals. With background subtraction, extra noise removal, and the clustering based k-means method, we got an average accuracy of more than 90% from the behavior from 1 to 3 persons, and also confirmed the reliability of our system no matter the position of the sensor. Our system can take advantages from autonomous mobile robots and protect the personal privacy. It hints at a generalization of flow recognition methods in the living spaces.

Transposon Insertion Finder (TIF): a novel program for detection of de novo transpositions of transposable elements.

PubMed

Nakagome, Mariko; Solovieva, Elena; Takahashi, Akira; Yasue, Hiroshi; Hirochika, Hirohiko; Miyao, Akio

2014-03-14

Transposition event detection of transposable element (TE) in the genome using short reads from the next-generation sequence (NGS) was difficult, because the nucleotide sequence of TE itself is repetitive, making it difficult to identify locations of its insertions by alignment programs for NGS. We have developed a program with a new algorithm to detect the transpositions from NGS data. In the process of tool development, we used next-generation sequence (NGS) data of derivative lines (ttm2 and ttm5) of japonica rice cv. Nipponbare, regenerated through cell culture. The new program, called a transposon insertion finder (TIF), was applied to detect the de novo transpositions of Tos17 in the regenerated lines. TIF searched 300 million reads of a line within 20 min, identifying 4 and 12 de novo transposition in ttm2 and ttm5 lines, respectively. All of the transpositions were confirmed by PCR/electrophoresis and sequencing. Using the program, we also detected new transposon insertions of P-element from NGS data of Drosophila melanogaster. TIF operates to find the transposition of any elements provided that target site duplications (TSDs) are generated by their transpositions.

Elemental Analysis of the JSC Mars-1 Soil Simulant using Laser Ablation and Magnetic Separation

NASA Technical Reports Server (NTRS)

Nasab, Ahab S.

2005-01-01

Future long-duration missions to Mars require capabilities in terms of manufacture of structures and chemical compounds essential for human habitat and exploratory activities. Currently, it is not feasible to import all the required raw and finished materials from Earth. In fact, essential items such as structural members as well as various gases for human consumption and material processing need to be largely extracted from the available planetary resources. The resources on Mars include its soil and rocks, its atmosphere and the polar caps. Mars atmosphere consists of 95% carbon dioxide and the balance contains small percentages of oxygen, nitrogen, and argon. The Mars regolith contains many metal oxides in various mineralogical forms. Presently, Martian soil samples are not available. However, a closely matched Martian soil simulant developed by the Johnson Space Center has been available for scientific research and engineering studies. The chemical makeup of this simulant is compared with the data from Viking Lander and Path Finder missions are shown..

Dissecting the evolution of dark matter subhaloes in the Bolshoi simulation

NASA Astrophysics Data System (ADS)

van den Bosch, Frank C.

2017-06-01

We present a comprehensive analysis of the evolution of dark matter subhaloes in the cosmological Bolshoi simulation. We identify a complete set of 12 unique evolution channels by which subhaloes evolve in between simulation outputs, and study their relative importance and demographics. We show that instantaneous masses and maximum circular velocities of individual subhaloes are extremely noisy, despite the use of a sophisticated, phase-space-based halo finder. We also show that subhaloes experience frequent penetrating encounters with other subhaloes (on average about one per dynamical time), and that subhaloes whose apo-centre lies outside the virial radius of their host (the 'ejected' or 'backsplash' haloes) experience tidal forces that modify their orbits. This results in an average fractional subhalo exchange rate among host haloes of ˜0.01 Gyr-1 (at the present time). In addition, we show that there are three distinct disruption channels; one in which subhaloes drop below the mass resolution limit of the simulation, one in which subhaloes 'merge' with their host halo largely driven by dynamical friction, and one in which subhaloes abruptly disintegrate. We estimate that roughly 80 per cent of all subhalo disruption in the Bolshoi simulation is numerical, rather than physical. This 'overmerging' is a serious road-block for the use of numerical simulations to interpret small-scale clustering, or for any other study that is sensitive to the detailed demographics of dark matter substructure.

A preliminary design for the GMT-Consortium Large Earth Finder (G-CLEF)

NASA Astrophysics Data System (ADS)

Szentgyorgyi, Andrew; Barnes, Stuart; Bean, Jacob; Bigelow, Bruce; Bouchez, Antonin; Chun, Moo-Young; Crane, Jeffrey D.; Epps, Harland; Evans, Ian; Evans, Janet; Frebel, Anna; Furesz, Gabor; Glenday, Alex; Guzman, Dani; Hare, Tyson; Jang, Bi-Ho; Jang, Jeong-Gyun; Jeong, Ueejong; Jordan, Andres; Kim, Kang-Min; Kim, Jihun; Li, Chih-Hao; Lopez-Morales, Mercedes; McCracken, Kenneth; McLeod, Brian; Mueller, Mark; Nah, Jakyung; Norton, Timothy; Oh, Heeyoung; Oh, Jae Sok; Ordway, Mark; Park, Byeong-Gon; Park, Chan; Park, Sung-Joon; Phillips, David; Plummer, David; Podgorski, William; Rodler, Florian; Seifahrt, Andreas; Tak, Kyung-Mo; Uomoto, Alan; Van Dam, Marcos A.; Walsworth, Ronald; Yu, Young Sam; Yuk, In-Soo

2014-08-01

The GMT-Consortium Large Earth Finder (G-CLEF) is an optical-band echelle spectrograph that has been selected as the first light instrument for the Giant Magellan Telescope (GMT). G-CLEF is a general-purpose, high dispersion spectrograph that is fiber fed and capable of extremely precise radial velocity measurements. The G-CLEF Concept Design (CoD) was selected in Spring 2013. Since then, G-CLEF has undergone science requirements and instrument requirements reviews and will be the subject of a preliminary design review (PDR) in March 2015. Since CoD review (CoDR), the overall G-CLEF design has evolved significantly as we have optimized the constituent designs of the major subsystems, i.e. the fiber system, the telescope interface, the calibration system and the spectrograph itself. These modifications have been made to enhance G-CLEF's capability to address frontier science problems, as well as to respond to the evolution of the GMT itself and developments in the technical landscape. G-CLEF has been designed by applying rigorous systems engineering methodology to flow Level 1 Scientific Objectives to Level 2 Observational Requirements and thence to Level 3 and Level 4. The rigorous systems approach applied to G-CLEF establishes a well defined science requirements framework for the engineering design. By adopting this formalism, we may flexibly update and analyze the capability of G-CLEF to respond to new scientific discoveries as we move toward first light. G-CLEF will exploit numerous technological advances and features of the GMT itself to deliver an efficient, high performance instrument, e.g. exploiting the adaptive optics secondary system to increase both throughput and radial velocity measurement precision.

Minimum Description Length Block Finder, a Method to Identify Haplotype Blocks and to Compare the Strength of Block Boundaries

PubMed Central

Mannila, H.; Koivisto, M.; Perola, M.; Varilo, T.; Hennah, W.; Ekelund, J.; Lukk, M.; Peltonen, L.; Ukkonen, E.

2003-01-01

We describe a new probabilistic method for finding haplotype blocks that is based on the use of the minimum description length (MDL) principle. We give a rigorous definition of the quality of a segmentation of a genomic region into blocks and describe a dynamic programming algorithm for finding the optimal segmentation with respect to this measure. We also describe a method for finding the probability of a block boundary for each pair of adjacent markers: this gives a tool for evaluating the significance of each block boundary. We have applied the method to the published data of Daly and colleagues. The results expose some problems that exist in the current methods for the evaluation of the significance of predicted block boundaries. Our method, MDL block finder, can be used to compare block borders in different sample sets, and we demonstrate this by applying the MDL-based method to define the block structure in chromosomes from population isolates. PMID:12761696

Minimum description length block finder, a method to identify haplotype blocks and to compare the strength of block boundaries.

PubMed

Mannila, H; Koivisto, M; Perola, M; Varilo, T; Hennah, W; Ekelund, J; Lukk, M; Peltonen, L; Ukkonen, E

2003-07-01

We describe a new probabilistic method for finding haplotype blocks that is based on the use of the minimum description length (MDL) principle. We give a rigorous definition of the quality of a segmentation of a genomic region into blocks and describe a dynamic programming algorithm for finding the optimal segmentation with respect to this measure. We also describe a method for finding the probability of a block boundary for each pair of adjacent markers: this gives a tool for evaluating the significance of each block boundary. We have applied the method to the published data of Daly and colleagues. The results expose some problems that exist in the current methods for the evaluation of the significance of predicted block boundaries. Our method, MDL block finder, can be used to compare block borders in different sample sets, and we demonstrate this by applying the MDL-based method to define the block structure in chromosomes from population isolates.

An Infrared Telescope for Planet Detection and General Astrophysics

NASA Technical Reports Server (NTRS)

Lillie, C. F.; Atkinson, C. B.; Casement, L. S.; Flannery, M. R.; Kroening, K. V.; Moses, S. L.

2004-01-01

NASA plans to launch a Terrestrial Planet Finder (TPF) mission in 2014 to detect and characterize Earth-like planets around nearby stars, perform comparative planetology studies, and obtain general astrophysics observations. During our recently completed a TPF Mission Architecture study for NASA/JPL we developed the conceptual design for a 28-meter telescope with an IR Coronagraph that meets these mission objectives. This telescope and the technology it embodies are directly applicable to future Far-IR and Submillimeter space missions. The detection of a 30th magnitude planet located within 50 milli-arc-seconds of a 5th (Visual) magnitude star is an exceptionally challenging objective. Observations in the thermal infrared (7-17 microns) are somewhat easier since the planet is "only" 15(sup m) fainter than the star at these wavelengths, but many severe challenges must still be overcome. These challenges include: 1. Designing a coronagraph for star:planet separations less than or equal to lambda/D. 2. Developing the deployment scheme for a 28m space telescope that can fit in an existing launch vehicle payload fairing. 3. Generating configuration layouts for the IR telescope, coronagraph, spacecraft bus, sunshade, solar array, and high-gain antenna. 4. Providing: Structural stability to within 10 microns to support the optics. Thermal control to achieve the necessary structural stability, as well as providing a stable (approx. 30K) thermal environment for the optics. Dynamics isolation from potential jitter sources. 5. Minimizing launch mass to provide the maximum payload for the science mission Interfacing to an EELV Heavy launch vehicle, including acoustic and stress loads for the launch environment. 6. Identifying the key technologies (which can be developed by 2009) that will enable TPF mission to be performed. 7. Generating a manufacturing plan that will permit TPF to be developed at a reasonable cost and schedule. Many of these design challenges result in

STIS CORONAGRAPHIC IMAGING OF FOMALHAUT: MAIN BELT STRUCTURE AND THE ORBIT OF FOMALHAUT b

DOE Office of Scientific and Technical Information (OSTI.GOV)

Kalas, Paul; Graham, James R.; Fitzgerald, Michael P.

2013-09-20

We present new optical coronagraphic data of Fomalhaut obtained with HST/STIS in 2010 and 2012. Fomalhaut b is recovered at both epochs to high significance. The observations include the discoveries of tenuous nebulosity beyond the main dust belt detected to at least 209 AU projected radius, and a ∼50 AU wide azimuthal gap in the belt northward of Fomalhaut b. The two epochs of Space Telescope Imaging Spectrograph (STIS) photometry exclude optical variability greater than 35%. A Markov chain Monte Carlo analysis demonstrates that the orbit of Fomalhaut b is highly eccentric, with e = 0.8 ± 0.1, a =more » 177 ± 68 AU, and q = 32 ± 24 AU. Fomalhaut b is apsidally aligned with the belt and 90% of allowed orbits have mutual inclination ≤36°. Fomalhaut b's orbit is belt crossing in the sky plane projection, but only 12% of possible orbits have ascending or descending nodes within a 25 AU wide belt annulus. The high eccentricity invokes a dynamical history where Fomalhaut b may have experienced a significant dynamical interaction with a hypothetical planet Fomalhaut c, and the current orbital configuration may be relatively short-lived. The Tisserand parameter with respect to a hypothetical Fomalhaut planet at 30 AU or 120 AU lies in the range 2-3, similar to highly eccentric dwarf planets in our solar system. We argue that Fomalhaut b's minimum mass is that of a dwarf planet in order for a circumplanetary satellite system to remain bound to a sufficient radius from the planet to be consistent with the dust scattered light hypothesis. In the coplanar case, Fomalhaut b will collide with the main belt around 2032, and the subsequent emergent phenomena may help determine its physical nature.« less

STIS Coronagraphic Imaging of Fomalhaut: Main Belt Structure and the Orbit of Fomalhaut b

NASA Technical Reports Server (NTRS)

Kalas, Paul; Graham, James R.; Fitzgerald, Michael P.; Clampin, Mark

2013-01-01

We present new optical coronagraphic data of Fomalhaut obtained with HST/STIS in 2010 and 2012. Fomalhaut b is recovered at both epochs to high significance. The observations include the discoveries of tenuous nebulosity beyond the main dust belt detected to at least 209AU projected radius, and a approx. 50AU wide azimuthal gap in the belt northward of Fomalhaut b. The two epochs of Space Telescope Imaging Spectrograph (STIS) photometry exclude optical variability greater than 35%. A Markov chain Monte Carlo analysis demonstrates that the orbit of Fomalhaut b is highly eccentric, with e = 0.8 +/- 0.1, a = 177 +/- 68AU, and q = 32 +/- 24AU. Fomalhaut b is apsidally aligned with the belt and 90% of allowed orbits have mutual inclination <=36 deg. Fomalhaut b's orbit is belt crossing in the sky plane projection, but only 12% of possible orbits have ascending or descending nodes within a 25AU wide belt annulus. The high eccentricity invokes a dynamical history where Fomalhaut b may have experienced a significant dynamical interaction with a hypothetical planet Fomalhaut c, and the current orbital configuration may be relatively short-lived. The Tisserand parameter with respect to a hypothetical Fomalhaut planet at 30AU or 120AU lies in the range 2-3, similar to highly eccentric dwarf planets in our solar system. We argue that Fomalhaut b's minimum mass is that of a dwarf planet in order for a circumplanetary satellite system to remain bound to a sufficient radius from the planet to be consistent with the dust scattered light hypothesis. In the coplanar case, Fomalhaut b will collide with the main belt around 2032, and the subsequent emergent phenomena may help determine its physical nature.

Referral Finder: Saving Time and Improving The Quality of In-hospital Referrals.

PubMed

Cathcart, Jennifer; Cowan, Neil; Tully, Vicki

2016-01-01

Making referrals to other hospital specialties is one of the key duties of the foundation doctor, which can be difficult and time consuming. In Ninewells hospital, Scotland, in our experience the effectiveness of referrals is limited by contact details not being readily accessible and foundation doctors not knowing what information is relevant to each specialty. We surveyed foundation doctors on their experience of the existing referral process to identify where we needed to focus to improve the process. The doctors reported significant delays in obtaining contact details from the operator, and found they did not know the specific information needed in each referral. To increase the information available to foundation doctors, we set up a page on the staff intranet called 'Referral Finder'. This page includes contact details, guidelines for referral, and links to relevant protocols for each specialty. By making this information readily accessible our objective was to increase the speed and quality of referrals. When surveyed two months after the web page was established, foundation doctors reported a reduction in calls to operator from baseline and reported achieving more effective referrals. When asked to comment, many doctors asked if the page could include details for other hospitals in our health board and provide more specialty specific information. This feedback prompted us to extend the scope of the page to include the district general hospital in our region, and update many of the existing details. Doctors were then surveyed after the updates, 100% agreed that the website saved time and there was a 49.3% reduction in doctors who reported not knowing the specific information needed for a referral. Having adequate information improved referrals and resulted in time saved. This would allow more time for patient care. The quality improvement project was praised among doctors as a useful, innovative and replicable project.

Optimal Jet Finder (v1.0 C++)

NASA Astrophysics Data System (ADS)

Chumakov, S.; Jankowski, E.; Tkachov, F. V.

2006-10-01

We describe a C++ implementation of the Optimal Jet Definition for identification of jets in hadronic final states of particle collisions. We explain interface subroutines and provide a usage example. The source code is available from http://www.inr.ac.ru/~ftkachov/projects/jets/. Program summaryTitle of program: Optimal Jet Finder (v1.0 C++) Catalogue identifier: ADSB_v2_0 Program summary URL:http://cpc.cs.qub.ac.uk/summaries/ADSB_v2_0 Program obtainable from: CPC Program Library, Queen's University of Belfast, N. Ireland Computer: any computer with a standard C++ compiler Tested with:GNU gcc 3.4.2, Linux Fedora Core 3, Intel i686; Forte Developer 7 C++ 5.4, SunOS 5.9, UltraSPARC III+; Microsoft Visual C++ Toolkit 2003 (compiler 13.10.3077, linker 7.10.30777, option /EHsc), Windows XP, Intel i686. Programming language used: C++ Memory required:˜1 MB (or more, depending on the settings) No. of lines in distributed program, including test data, etc.: 3047 No. of bytes in distributed program, including test data, etc.: 17 884 Distribution format: tar.gz Nature of physical problem: Analysis of hadronic final states in high energy particle collision experiments often involves identification of hadronic jets. A large number of hadrons detected in the calorimeter is reduced to a few jets by means of a jet finding algorithm. The jets are used in further analysis which would be difficult or impossible when applied directly to the hadrons. Grigoriev et al. [D.Yu. Grigoriev, E. Jankowski, F.V. Tkachov, Phys. Rev. Lett. 91 (2003) 061801] provide brief introduction to the subject of jet finding algorithms and a general review of the physics of jets can be found in [R. Barlow, Rep. Prog. Phys. 36 (1993) 1067]. Method of solution: The software we provide is an implementation of the so-called Optimal Jet Definition (OJD). The theory of OJD was developed in [F.V. Tkachov, Phys. Rev. Lett. 73 (1994) 2405; Erratum, Phys. Rev. Lett. 74 (1995) 2618; F.V. Tkachov, Int. J. Modern Phys

The GMT-Consortium Large Earth Finder (G-CLEF) : An Optical Echelle Spectrograph for the Giant Magellan Telescope (GMT) with Multi-Object Spectroscopy (MOS) Capability

NASA Astrophysics Data System (ADS)

Szentgyorgyi, Andrew

2017-09-01

"The GMT-Consortium Large Earth Finder (G-CLEF) is an optical band echelle spectrograph that has been selected as the first light instrument for the Giant Magellan Telescope (GMT). G-CLEF is a general purpose, high dispersion instrument that is fiber fed and capable of extremely precise radial velocity (PRV) measurements. G-CLEF will have a novel multi-object spectroscopy (MOS) capability that will be useful for a number of exoplanet science programs. I describe the general properties of G-CLEF and the systems engineering analyses, especially for PRV, that drove the current G-CLEF design. The requirements for calibration of the MOS channel are presented along with several novel approaches for achieving moderate radial velocity precision in the MOS mode."

Reconnection-driven Magnetohydrodynamic Turbulence in a Simulated Coronal-hole Jet

DOE Office of Scientific and Technical Information (OSTI.GOV)

Uritsky, Vadim M.; Roberts, Merrill A.; DeVore, C. Richard

Extreme-ultraviolet and X-ray jets occur frequently in magnetically open coronal holes on the Sun, especially at high solar latitudes. Some of these jets are observed by white-light coronagraphs as they propagate through the outer corona toward the inner heliosphere, and it has been proposed that they give rise to microstreams and torsional Alfvén waves detected in situ in the solar wind. To predict and understand the signatures of coronal-hole jets, we have performed a detailed statistical analysis of such a jet simulated by an adaptively refined magnetohydrodynamics model. The results confirm the generation and persistence of three-dimensional, reconnection-driven magnetic turbulencemore » in the simulation. We calculate the spatial correlations of magnetic fluctuations within the jet and find that they agree best with the Müller–Biskamp scaling model including intermittent current sheets of various sizes coupled via hydrodynamic turbulent cascade. The anisotropy of the magnetic fluctuations and the spatial orientation of the current sheets are consistent with an ensemble of nonlinear Alfvén waves. These properties also reflect the overall collimated jet structure imposed by the geometry of the reconnecting magnetic field. A comparison with Ulysses observations shows that turbulence in the jet wake is in quantitative agreement with that in the fast solar wind.« less

Galaxy groups in the low-redshift Universe

NASA Astrophysics Data System (ADS)

Lim, S. H.; Mo, H. J.; Lu, Yi; Wang, Huiyuan; Yang, Xiaohu

2017-09-01

We apply a halo-based group finder to four large redshift surveys, the 2MRS (Two Micron All-Sky Redshift Survey), 6dFGS (Six-degree Field Galaxy Survey), SDSS (Sloan Digital Sky Survey) and 2dFGRS (Two-degree Field Galaxy Redshift Survey), to construct group catalogues in the low-redshift Universe. The group finder is based on that of Yang et al. but with an improved halo mass assignment so that it can be applied uniformly to various redshift surveys of galaxies. Halo masses are assigned to groups according to proxies based on the stellar mass/luminosity of member galaxies. The performances of the group finder in grouping galaxies according to common haloes and in halo mass assignments are tested using realistic mock samples constructed from hydrodynamical simulations and empirical models of galaxy occupation in dark matter haloes. Our group finder finds ∼94 per cent of the correct true member galaxies for 90-95 per cent of the groups in the mock samples; the halo masses assigned by the group finder are un-biased with respect to the true halo masses, and have a typical uncertainty of ∼0.2 dex. The properties of group catalogues constructed from the observational samples are described and compared with other similar catalogues in the literature.

Large-scale and Long-duration Simulation of a Multi-stage Eruptive Solar Event

NASA Astrophysics Data System (ADS)

Jiang, chaowei; Hu, Qiang; Wu, S. T.

2015-04-01

We employ a data-driven 3D MHD active region evolution model by using the Conservation Element and Solution Element (CESE) numerical method. This newly developed model retains the full MHD effects, allowing time-dependent boundary conditions and time evolution studies. The time-dependent simulation is driven by measured vector magnetograms and the method of MHD characteristics on the bottom boundary. We have applied the model to investigate the coronal magnetic field evolution of AR11283 which was characterized by a pre-existing sigmoid structure in the core region and multiple eruptions, both in relatively small and large scales. We have succeeded in producing the core magnetic field structure and the subsequent eruptions of flux-rope structures (see https://dl.dropboxusercontent.com/u/96898685/large.mp4 for an animation) as the measured vector magnetograms on the bottom boundary evolve in time with constant flux emergence. The whole process, lasting for about an hour in real time, compares well with the corresponding SDO/AIA and coronagraph imaging observations. From these results, we show the capability of the model, largely data-driven, that is able to simulate complex, topological, and highly dynamic active region evolutions. (We acknowledge partial support of NSF grants AGS 1153323 and AGS 1062050, and data support from SDO/HMI and AIA teams).

Unsynchronized scanning with a low-cost laser range finder for real-time range imaging

NASA Astrophysics Data System (ADS)

Hatipoglu, Isa; Nakhmani, Arie

2017-06-01

Range imaging plays an essential role in many fields: 3D modeling, robotics, heritage, agriculture, forestry, reverse engineering. One of the most popular range-measuring technologies is laser scanner due to its several advantages: long range, high precision, real-time measurement capabilities, and no dependence on lighting conditions. However, laser scanners are very costly. Their high cost prevents widespread use in applications. Due to the latest developments in technology, now, low-cost, reliable, faster, and light-weight 1D laser range finders (LRFs) are available. A low-cost 1D LRF with a scanning mechanism, providing the ability of laser beam steering for additional dimensions, enables to capture a depth map. In this work, we present an unsynchronized scanning with a low-cost LRF to decrease scanning period and reduce vibrations caused by stop-scan in synchronized scanning. Moreover, we developed an algorithm for alignment of unsynchronized raw data and proposed range image post-processing framework. The proposed technique enables to have a range imaging system for a fraction of the price of its counterparts. The results prove that the proposed method can fulfill the need for a low-cost laser scanning for range imaging for static environments because the most significant limitation of the method is the scanning period which is about 2 minutes for 55,000 range points (resolution of 250x220 image). In contrast, scanning the same image takes around 4 minutes in synchronized scanning. Once faster, longer range, and narrow beam LRFs are available, the methods proposed in this work can produce better results.

Experimental Verification of Sparse Aperture Mask for Low Order Wavefront Sensing

NASA Astrophysics Data System (ADS)

Subedi, Hari; Kasdin, N. Jeremy

2017-01-01

To directly image exoplanets, future space-based missions are equipped with coronagraphs which manipulate the diffraction of starlight and create regions of high contrast called dark holes. Theoretically, coronagraphs can be designed to achieve the high level of contrast required to image exoplanets, which are billions of times dimmer than their host stars, however the aberrations caused by optical imperfections and thermal fluctuations cause the degradation of contrast in the dark holes. Focal plane wavefront control (FPWC) algorithms using deformable mirrors (DMs) are used to mitigate the quasi-static aberrations caused by optical imperfections. Although the FPWC methods correct the quasi-static aberrations, they are blind to dynamic errors caused by telescope jitter and thermal fluctuations. At Princeton's High Contrast Imaging Lab we have developed a new technique that integrates a sparse aperture mask with the coronagraph to estimate these low-order dynamic wavefront errors. This poster shows the effectiveness of a SAM Low-Order Wavefront Sensor in estimating and correcting these errors via simulation and experiment and compares the results to other methods, such as the Zernike Wavefront Sensor planned for WFIRST.

High-charge and multiple-star vortex coronagraphy from stacked vector vortex phase masks.

PubMed

Aleksanyan, Artur; Brasselet, Etienne

2018-02-01

Optical vortex phase masks are now installed at many ground-based large telescopes for high-contrast astronomical imaging. To date, such instrumental advances have been restricted to the use of helical phase masks of the lowest even order, while future giant telescopes will require high-order masks. Here we propose a single-stage on-axis scheme to create high-order vortex coronagraphs based on second-order vortex phase masks. By extending our approach to an off-axis design, we also explore the implementation of multiple-star vortex coronagraphy. An experimental laboratory demonstration is reported and supported by numerical simulations. These results offer a practical roadmap to the development of future coronagraphic tools with enhanced performances.

LobeFinder: A Convex Hull-Based Method for Quantitative Boundary Analyses of Lobed Plant Cells1[OPEN

PubMed Central

Wu, Tzu-Ching; Belteton, Samuel A.; Szymanski, Daniel B.; Umulis, David M.

2016-01-01

Dicot leaves are composed of a heterogeneous mosaic of jigsaw puzzle piece-shaped pavement cells that vary greatly in size and the complexity of their shape. Given the importance of the epidermis and this particular cell type for leaf expansion, there is a strong need to understand how pavement cells morph from a simple polyhedral shape into highly lobed and interdigitated cells. At present, it is still unclear how and when the patterns of lobing are initiated in pavement cells, and one major technological bottleneck to addressing the problem is the lack of a robust and objective methodology to identify and track lobing events during the transition from simple cell geometry to lobed cells. We developed a convex hull-based algorithm termed LobeFinder to identify lobes, quantify geometric properties, and create a useful graphical output of cell coordinates for further analysis. The algorithm was validated against manually curated images of pavement cells of widely varying sizes and shapes. The ability to objectively count and detect new lobe initiation events provides an improved quantitative framework to analyze mutant phenotypes, detect symmetry-breaking events in time-lapse image data, and quantify the time-dependent correlation between cell shape change and intracellular factors that may play a role in the morphogenesis process. PMID:27288363

Mapping the solar wind HI outflow velocity in the inner heliosphere by coronagraphic ultraviolet and visible-light observations

NASA Astrophysics Data System (ADS)

Dolei, S.; Susino, R.; Sasso, C.; Bemporad, A.; Andretta, V.; Spadaro, D.; Ventura, R.; Antonucci, E.; Abbo, L.; Da Deppo, V.; Fineschi, S.; Focardi, M.; Frassetto, F.; Giordano, S.; Landini, F.; Naletto, G.; Nicolini, G.; Nicolosi, P.; Pancrazzi, M.; Romoli, M.; Telloni, D.

2018-05-01

We investigated the capability of mapping the solar wind outflow velocity of neutral hydrogen atoms by using synergistic visible-light and ultraviolet observations. We used polarised brightness images acquired by the LASCO/SOHO and Mk3/MLSO coronagraphs, and synoptic Lyα line observations of the UVCS/SOHO spectrometer to obtain daily maps of solar wind H I outflow velocity between 1.5 and 4.0 R⊙ on the SOHO plane of the sky during a complete solar rotation (from 1997 June 1 to 1997 June 28). The 28-days data sequence allows us to construct coronal off-limb Carrington maps of the resulting velocities at different heliocentric distances to investigate the space and time evolution of the outflowing solar plasma. In addition, we performed a parameter space exploration in order to study the dependence of the derived outflow velocities on the physical quantities characterising the Lyα emitting process in the corona. Our results are important in anticipation of the future science with the Metis instrument, selected to be part of the Solar Orbiter scientific payload. It was conceived to carry out near-sun coronagraphy, performing for the first time simultaneous imaging in polarised visible-light and ultraviolet H I Lyα line, so providing an unprecedented view of the solar wind acceleration region in the inner corona. The movie (see Sect. 4.2) is available at https://www.aanda.org

Space-based Coronagraphic Imaging Polarimetry of the TW Hydrae Disk: Shedding New Light on Self-shadowing Effects

NASA Astrophysics Data System (ADS)

Poteet, Charles A.; Chen, Christine H.; Hines, Dean C.; Perrin, Marshall D.; Debes, John H.; Pueyo, Laurent; Schneider, Glenn; Mazoyer, Johan; Kolokolova, Ludmilla

2018-06-01

We present Hubble Space Telescope Near-Infrared Camera and Multi-Object Spectrometer coronagraphic imaging polarimetry of the TW Hydrae protoplanetary disk. These observations simultaneously measure the total and polarized intensity, allowing direct measurement of the polarization fraction across the disk. In accord with the self-shadowing hypothesis recently proposed by Debes et al., we find that the total and polarized intensity of the disk exhibits strong azimuthal asymmetries at projected distances consistent with the previously reported bright and dark ring-shaped structures (∼45–99 au). The sinusoidal-like variations possess a maximum brightness at position angles near ∼268°–300° and are up to ∼28% stronger in total intensity. Furthermore, significant radial and azimuthal variations are also detected in the polarization fraction of the disk. In particular, we find that regions of lower polarization fraction are associated with annuli of increased surface brightness, suggesting that the relative proportion of multiple-to-single scattering is greater along the ring and gap structures. Moreover, we find strong (∼20%) azimuthal variation in the polarization fraction along the shadowed region of the disk. Further investigation reveals that the azimuthal variation is not the result of disk flaring effects, but is instead from a decrease in the relative contribution of multiple-to-single scattering within the shadowed region. Employing a two-layer scattering surface, we hypothesize that the diminished contribution in multiple scattering may result from shadowing by an inclined inner disk, which prevents direct stellar light from reaching the optically thick underlying surface component.

A Glimpse at Quasar Host Galaxy Far-UV Emission, Using Damped Lyα's as Natural Coronagraphs

DOE PAGES

Cai, Zheng; Fan, Xiaohui; Noterdaeme, Pasquier; ...

2014-09-16

In merger-driven models of massive galaxy evolution, the luminous quasar phase is expected to be accompanied by vigorous star formation in quasar host galaxies. In this paper, we use high column density damped Lyα (DLA) systems along quasar sight lines as natural coronagraphs to directly study the far-UV (FUV) radiation from the host galaxies of luminous background quasars. Here, we have stacked the spectra of ~2000 DLA systems (N HI > 10 20.6cm –2) with a median absorption redshiftmore » $$\\langle$$z$$\\rangle$$ = 2.6 selected from quasars observed in the SDSS-III Baryon Oscillation Spectroscopic Survey. We detect residual flux in the dark troughs of the composite DLA spectra. The level of this residual flux significantly exceeds systematic errors in the Sloan Digital Sky Survey fiber sky subtraction; furthermore, the residual flux is strongly correlated with the continuum luminosity of the background quasar, while uncorrelated with DLA column density or metallicity. We conclude that the flux could be associated with the average FUV radiation from the background quasar host galaxies (with medium redshift $$\\langle$$z$$\\rangle$$ = 3.1) that is not blocked by the intervening DLA. Finally, assuming that all of the detected flux originates from quasar hosts, for the highest quasar luminosity bin ($$\\langle$$L$$\\rangle$$ = 2.5 × 10 13 L ⊙), the host galaxy has an FUV intensity of 1.5 ± 0.2 × 10 40 erg s –1 Å –1; this corresponds to an unobscured UV star formation rate of 9 M ⊙ yr –1.« less

The "grep" command but not FusionMap, FusionFinder or ChimeraScan captures the CIC-DUX4 fusion gene from whole transcriptome sequencing data on a small round cell tumor with t(4;19)(q35;q13).

PubMed

Panagopoulos, Ioannis; Gorunova, Ludmila; Bjerkehagen, Bodil; Heim, Sverre

2014-01-01

Whole transcriptome sequencing was used to study a small round cell tumor in which a t(4;19)(q35;q13) was part of the complex karyotype but where the initial reverse transcriptase PCR (RT-PCR) examination did not detect a CIC-DUX4 fusion transcript previously described as the crucial gene-level outcome of this specific translocation. The RNA sequencing data were analysed using the FusionMap, FusionFinder, and ChimeraScan programs which are specifically designed to identify fusion genes. FusionMap, FusionFinder, and ChimeraScan identified 1017, 102, and 101 fusion transcripts, respectively, but CIC-DUX4 was not among them. Since the RNA sequencing data are in the fastq text-based format, we searched the files using the "grep" command-line utility. The "grep" command searches the text for specific expressions and displays, by default, the lines where matches occur. The "specific expression" was a sequence of 20 nucleotides from the coding part of the last exon 20 of CIC (Reference Sequence: NM_015125.3) chosen since all the so far reported CIC breakpoints have occurred here. Fifteen chimeric CIC-DUX4 cDNA sequences were captured and the fusion between the CIC and DUX4 genes was mapped precisely. New primer combinations were constructed based on these findings and were used together with a polymerase suitable for amplification of GC-rich DNA templates to amplify CIC-DUX4 cDNA fragments which had the same fusion point found with "grep". In conclusion, FusionMap, FusionFinder, and ChimeraScan generated a plethora of fusion transcripts but did not detect the biologically important CIC-DUX4 chimeric transcript; they are generally useful but evidently suffer from imperfect both sensitivity and specificity. The "grep" command is an excellent tool to capture chimeric transcripts from RNA sequencing data when the pathological and/or cytogenetic information strongly indicates the presence of a specific fusion gene.

Development and validation of the Overlap Muon Track Finder for the CMS experiment

NASA Astrophysics Data System (ADS)

Dobosz, J.; Mietki, P.; Zawistowski, K.; Żarnecki, G.

2016-09-01

Present article is a description of the authors contribution in upgrade and analysis of performance of the Level-1 Muon Trigger of the CMS experiment. The authors are students of University of Warsaw and Gdansk University of Technology. They are collaborating with the CMS Warsaw Group. This article summarises students' work presented during the Students session during the Workshop XXXVIII-th IEEE-SPIE Joint Symposium Wilga 2016. In the first section the CMS experiment is briefly described and the importance of the trigger system is explained. There is also shown basic difference between old muon trigger strategy and the upgraded one. The second section is devoted to Overlap Muon Track Finder (OMTF). This is one of the crucial components of the Level-1 Muon Trigger. The algorithm of OMTF is described. In the third section there is discussed one of the event selection aspects - cut on the muon transverse momentum pT . Sometimes physical muon with pT bigger than a certain threshold is unnecessarily cut and physical muon with lower pT survives. To improve pT selection modified algorithm was proposed and its performance was studied. One of the features of the OMTF is that one physical muon often results in several muon candidates. The Ghost-Buster algorithm is designed to eliminate surplus candidates. In the fourth section this algorithm and its performance on different data samples are discussed. In the fifth section Local Data Acquisition System (Local DAQ) is briefly described. It supports initial system commissioning. The test done with OMTF Local DAQ are described. In the sixth section there is described development of web application used for the control and monitoring of CMS electronics. The application provides access to graphical user interface for manual control and the connection to the CMS hierarchical Run Control.

Joint Seismic-Geodetic Algorithm for Finite-Fault Detection and Slip Inversion in the West Coast ShakeAlert System

NASA Astrophysics Data System (ADS)

Smith, D. E.; Felizardo, C.; Minson, S. E.; Boese, M.; Langbein, J. O.; Murray, J. R.

2016-12-01

Finite-fault source algorithms can greatly benefit earthquake early warning (EEW) systems. Estimates of finite-fault parameters provide spatial information, which can significantly improve real-time shaking calculations and help with disaster response. In this project, we have focused on integrating a finite-fault seismic-geodetic algorithm into the West Coast ShakeAlert framework. The seismic part is FinDer 2, a C++ version of the algorithm developed by Böse et al. (2012). It interpolates peak ground accelerations and calculates the best fault length and strike from template matching. The geodetic part is a C++ version of BEFORES, the algorithm developed by Minson et al. (2014) that uses a Bayesian methodology to search for the most probable slip distribution on a fault of unknown orientation. Ultimately, these two will be used together where FinDer generates a Bayesian prior for BEFORES via the methodology of Minson et al. (2015), and the joint solution will generate estimates of finite-fault extent, strike, dip, best slip distribution, and magnitude. We have created C++ versions of both FinDer and BEFORES using open source libraries and have developed a C++ Application Protocol Interface (API) for them both. Their APIs allow FinDer and BEFORES to contribute to the ShakeAlert system via an open source messaging system, ActiveMQ. FinDer has been receiving real-time data, detecting earthquakes, and reporting messages on the development system for several months. We are also testing FinDer extensively with Earthworm tankplayer files. BEFORES has been tested with ActiveMQ messaging in the ShakeAlert framework, and works off a FinDer trigger. We are finishing the FinDer-BEFORES connections in this framework, and testing this system via seismic-geodetic tankplayer files. This will include actual and simulated data.

A glimpse at quasar host galaxy far-UV emission using damped Lyα's as natural coronagraphs

DOE Office of Scientific and Technical Information (OSTI.GOV)

Cai, Zheng; Fan, Xiaohui; Wang, Ran

2014-10-01

In merger-driven models of massive galaxy evolution, the luminous quasar phase is expected to be accompanied by vigorous star formation in quasar host galaxies. In this paper, we use high column density damped Lyα (DLA) systems along quasar sight lines as natural coronagraphs to directly study the far-UV (FUV) radiation from the host galaxies of luminous background quasars. We have stacked the spectra of ∼2000 DLA systems (N {sub H} {sub I} > 10{sup 20.6} cm{sup –2}) with a median absorption redshift (z) = 2.6 selected from quasars observed in the SDSS-III Baryon Oscillation Spectroscopic Survey. We detect residual fluxmore » in the dark troughs of the composite DLA spectra. The level of this residual flux significantly exceeds systematic errors in the Sloan Digital Sky Survey fiber sky subtraction; furthermore, the residual flux is strongly correlated with the continuum luminosity of the background quasar, while uncorrelated with DLA column density or metallicity. We conclude that the flux could be associated with the average FUV radiation from the background quasar host galaxies (with medium redshift (z) = 3.1) that is not blocked by the intervening DLA. Assuming that all of the detected flux originates from quasar hosts, for the highest quasar luminosity bin ((L) = 2.5 × 10{sup 13} L {sub ☉}), the host galaxy has an FUV intensity of 1.5 ± 0.2 × 10{sup 40} erg s{sup –1} Å{sup –1}; this corresponds to an unobscured UV star formation rate of 9 M {sub ☉} yr{sup –1}.« less

Local Context Finder (LCF) reveals multidimensional relationships among mRNA expression profiles of Arabidopsis responding to pathogen infection

PubMed Central

Katagiri, Fumiaki; Glazebrook, Jane

2003-01-01

A major task in computational analysis of mRNA expression profiles is definition of relationships among profiles on the basis of similarities among them. This is generally achieved by pattern recognition in the distribution of data points representing each profile in a high-dimensional space. Some drawbacks of commonly used pattern recognition algorithms stem from their use of a globally linear space and/or limited degrees of freedom. A pattern recognition method called Local Context Finder (LCF) is described here. LCF uses nonlinear dimensionality reduction for pattern recognition. Then it builds a network of profiles based on the nonlinear dimensionality reduction results. LCF was used to analyze mRNA expression profiles of the plant host Arabidopsis interacting with the bacterial pathogen Pseudomonas syringae. In one case, LCF revealed two dimensions essential to explain the effects of the NahG transgene and the ndr1 mutation on resistant and susceptible responses. In another case, plant mutants deficient in responses to pathogen infection were classified on the basis of LCF analysis of their profiles. The classification by LCF was consistent with the results of biological characterization of the mutants. Thus, LCF is a powerful method for extracting information from expression profile data. PMID:12960373

Exploring the Inner Acceleration Region of Solar Wind: A Study Based on Coronagraphic UV and Visible Light Data

NASA Astrophysics Data System (ADS)

Bemporad, A.

2017-09-01

This work combined coronagraphic visible light (VL) and UV data to provide with an unprecedented view of the inner corona where the nascent solar wind is accelerated. The UV (H I Lyα) and VL (polarized brightness) images (reconstructed with SOHO/UVCS, LASCO, and Mauna Loa data) have been analyzed with the Doppler dimming technique to provide for the first time daily 2D images of the radial wind speed between 1 and 6 R ⊙ over 1 month of observations. Results show that both polar and equatorial regions are characterized at the base of the corona by plasma outflows at speeds > 100 km s-1. The plasma is then decelerated within ˜1.5 R ⊙ at the poles and ˜2.0 R ⊙ at the equator, where local minima of the expansion speeds are reached, and gently reaccelerated higher up, reaching speeds typical of fast and slow wind components. The mass flux is highly variable with latitude and time at the equator and more uniform and stable over the poles. The polar flow is asymmetric, with speeds above the south pole lower than those above the north pole. A correlation (anticorrelation) between the wind speed and its density is found below (above) ˜1.8 R ⊙. The 2D distribution of forces responsible for deceleration and reacceleration of solar wind is provided and interpreted in terms of Alfvén waves. These results provide a possible connection between small-scale outflows reported with other instruments at the base of the corona and bulk wind flows measured higher up.

Modeling solar energetic particle events using ENLIL heliosphere simulations

NASA Astrophysics Data System (ADS)

Luhmann, J. G.; Mays, M. L.; Odstrcil, D.; Li, Yan; Bain, H.; Lee, C. O.; Galvin, A. B.; Mewaldt, R. A.; Cohen, C. M. S.; Leske, R. A.; Larson, D.; Futaana, Y.

2017-07-01

Solar energetic particle (SEP) event modeling has gained renewed attention in part because of the availability of a decade of multipoint measurements from STEREO and L1 spacecraft at 1 AU. These observations are coupled with improving simulations of the geometry and strength of heliospheric shocks obtained by using coronagraph images to send erupted material into realistic solar wind backgrounds. The STEREO and ACE measurements in particular have highlighted the sometimes surprisingly widespread nature of SEP events. It is thus an opportune time for testing SEP models, which typically focus on protons 1-100 MeV, toward both physical insight to these observations and potentially useful space radiation environment forecasting tools. Some approaches emphasize the concept of particle acceleration and propagation from close to the Sun, while others emphasize the local field line connection to a traveling, evolving shock source. Among the latter is the previously introduced SEPMOD treatment, based on the widely accessible and well-exercised WSA-ENLIL-cone model. SEPMOD produces SEP proton time profiles at any location within the ENLIL domain. Here we demonstrate a SEPMOD version that accommodates multiple, concurrent shock sources occurring over periods of several weeks. The results illustrate the importance of considering longer-duration time periods and multiple CME contributions in analyzing, modeling, and forecasting SEP events.

Visibility of Prominences Using the He i D3 Line Filter on the PROBA-3/ASPIICS Coronagraph

NASA Astrophysics Data System (ADS)

Jejčič, S.; Heinzel, P.; Labrosse, N.; Zhukov, A. N.; Bemporad, A.; Fineschi, S.; Gunár, S.

2018-02-01

We determine the optimal width and shape of the narrow-band filter centered on the He i D3 line for prominence and coronal mass ejection (CME) observations with the ASPIICS ( Association of Spacecraft for Polarimetric and Imaging Investigation of the Corona of the Sun) coronagraph onboard the PROBA-3 ( Project for On-board Autonomy) satellite, to be launched in 2020. We analyze He i D3 line intensities for three representative non-local thermal equilibrium prominence models at temperatures 8, 30, and 100 kK computed with a radiative transfer code and the prominence visible-light (VL) emission due to Thomson scattering on the prominence electrons. We compute various useful relations at prominence line-of-sight velocities of 0, 100, and 300 km s-1 for 20 Å wide flat filter and three Gaussian filters with a full-width at half-maximum (FWHM) equal to 5, 10, and 20 Å to show the relative brightness contribution of the He i D3 line and the prominence VL to the visibility in a given narrow-band filter. We also discuss possible signal contamination by Na i D1 and D2 lines, which otherwise may be useful to detect comets. Our results mainly show that i) an optimal narrow-band filter should be flat or somewhere between flat and Gaussian with an FWHM of 20 Å in order to detect fast-moving prominence structures, ii) the maximum emission in the He i D3 line is at 30 kK and the minimal at 100 kK, and iii) the ratio of emission in the He i D3 line to the VL emission can provide a useful diagnostic for the temperature of prominence structures. This ratio is up to 10 for hot prominence structures, up to 100 for cool structures, and up to 1000 for warm structures.

Introducing galactic structure finder: the multiple stellar kinematic structures of a simulated Milky Way mass galaxy

NASA Astrophysics Data System (ADS)

Obreja, Aura; Macciò, Andrea V.; Moster, Benjamin; Dutton, Aaron A.; Buck, Tobias; Wang, Gregory S. Stinson Liang

2018-04-01

We present the first results of applying Gaussian Mixture Models in the stellar kinematic space of normalized angular momentum and binding energy on NIHAO high resolution galaxies to separate the stars into multiple components. We exemplify this method using a simulated Milky Way analogue, whose stellar component hosts: thin and thick discs, classical and pseudo bulges, and a stellar halo. The properties of these stellar structures are in good agreement with observational expectations in terms of sizes, shapes and rotational support. Interestingly, the two kinematic discs show surface mass density profiles more centrally concentrated than exponentials, while the bulges and the stellar halo are purely exponential. We trace back in time the Lagrangian mass of each component separately to study their formation history. Between z ˜ 3 and the end of halo virialization, z ˜ 1.3, all components lose a fraction of their angular momentum. The classical bulge loses the most (˜95%) and the thin disc the least (˜60%). Both bulges formed their stars in-situ at high redshift, while the thin disc formed ˜98% in-situ, but with a constant SFR ˜ 1.5M⊙yr-1 over the last ˜ 11 Gyr. Accreted stars (6% of total stellar mass) are mainly incorporated to the thick disc or the stellar halo, which formed ex-situ 8% and 45% of their respective masses. Our analysis pipeline is freely available at https://github.com/aobr/gsf.

Fusing Range Measurements from Ultrasonic Beacons and a Laser Range Finder for Localization of a Mobile Robot

PubMed Central

Ko, Nak Yong; Kuc, Tae-Yong

2015-01-01

This paper proposes a method for mobile robot localization in a partially unknown indoor environment. The method fuses two types of range measurements: the range from the robot to the beacons measured by ultrasonic sensors and the range from the robot to the walls surrounding the robot measured by a laser range finder (LRF). For the fusion, the unscented Kalman filter (UKF) is utilized. Because finding the Jacobian matrix is not feasible for range measurement using an LRF, UKF has an advantage in this situation over the extended KF. The locations of the beacons and range data from the beacons are available, whereas the correspondence of the range data to the beacon is not given. Therefore, the proposed method also deals with the problem of data association to determine which beacon corresponds to the given range data. The proposed approach is evaluated using different sets of design parameter values and is compared with the method that uses only an LRF or ultrasonic beacons. Comparative analysis shows that even though ultrasonic beacons are sparsely populated, have a large error and have a slow update rate, they improve the localization performance when fused with the LRF measurement. In addition, proper adjustment of the UKF design parameters is crucial for full utilization of the UKF approach for sensor fusion. This study contributes to the derivation of a UKF-based design methodology to fuse two exteroceptive measurements that are complementary to each other in localization. PMID:25970259

Introducing galactic structure finder: the multiple stellar kinematic structures of a simulated Milky Way mass galaxy

NASA Astrophysics Data System (ADS)

Obreja, Aura; Macciò, Andrea V.; Moster, Benjamin; Dutton, Aaron A.; Buck, Tobias; Stinson, Gregory S.; Wang, Liang

2018-07-01

We present the first results of applying Gaussian Mixture Models in the stellar kinematic space of normalized angular momentum and binding energy on NIHAO high-resolution galaxies to separate the stars into multiple components. We exemplify this method, using a simulated Milky Way analogue, whose stellar component hosts thin and thick discs, classical and pseudo bulges, and a stellar halo. The properties of these stellar structures are in good agreement with observational expectations in terms of sizes, shapes, and rotational support. Interestingly, the two kinematic discs show surface mass density profiles more centrally concentrated than exponentials, while the bulges and the stellar halo are purely exponential. We trace back in time the Lagrangian mass of each component separately to study their formation history. Between z ˜ 3 and the end of halo virialization, z ˜ 1.3, all components lose a fraction of their angular momentum. The classical bulge loses the most (˜ 95 per cent) and the thin disc the least (˜ 60 per cent). Both bulges formed their stars in situ at high redshift, while the thin disc formed ˜ 98 per cent in situ, but with a constant SFR ˜ 1.5 M⊙ yr-1 over the last ˜11 Gyr. Accreted stars (6 per cent of total stellar mass) are mainly incorporated to the thick disc or the stellar halo, which formed ex situ 8 per cent and 45 per cent of their respective masses. Our analysis pipeline is freely available at https://github.com/aobr/gsf.

Detecting and Characterizing Exoplanets with the WFIRST Coronagraph: Colors of Planets in Standard and Designer Bandpasses-SETI

NASA Astrophysics Data System (ADS)

Turnbull, Margaret

The WFIRST mission is now envisioned to include a coronagraph for the purpose of direct detection of nearby exoplanets, including planets known to exist via radial velocity detection and new discoveries. Assuming that starlight rejection sufficient for planet detection (~1e-9) can be achieved, what can be learned about these planets given a realistic spectral resolution and signal-to-noise ratio? We propose to investigate the potential for WFIRST to efficiently discriminate planets from background sources, and to characterize planets in terms of important diagnostic atmospheric features, using broad- and intermediate band color data. We will map out this capability as a function of signal-to-noise ratio, bandpass location, and bandpass width. Our investigation will place emphasis on gas giants, ice giants, and mini-Neptunes (compatible with current AFTA-C baseline performance specifications), as well as a variety of super-Earths (an AFTA-C "stretch" goal). We will explore a variety of compositions, cloud types, phase angles, and (in the case of super-Earths with semi-transparent atmospheres) surface types. Noiseless spectra generated for these model planets will be passed through (a) standard bandpasses for comparison to prior work and (b) filter transmission curves corresponding to bandpasses of 5-20% over the full range of WFIRST's expected bandpass (400 - 1,000 nm). From this, filter combinations will be used to generate planet colors and find filter sets that most efficiently discriminate between planets and background sources, and between planets of different type. We will then repeat this exercise for S/N levels of 1-1,000 in order to (1) explore the true efficacy of broadband measurements in exoplanet studies, and (2) provide an estimate of total required integration time for a compelling WFIRST exoplanet program. To accomplish this, we will use model spectra for mini-Neptunes, and ice and gas giants of varying composition (Hu et al. 2013), and observed

ACE: AMY CDC (central drift chamber) fast track finder

DOE Office of Scientific and Technical Information (OSTI.GOV)

Mori, T.

1988-01-01

The central drift chamber (CDC) of the AMY detector at the TRISTAN e/sup /+//e/sup /-// collider features its fine granularity and multi-band structure. The tracking software named ACE which makes the most of these features shows an excellent performance for reconstruction of high multiplicity events with highly collimated jets. The obtained reconstruction efficiency is 97% for the particles coming from within 5 cm of the primary vertex with p/sub t/ /approx gt/ 500 MeVc in the simulated hadronic events. The processing time is on average less than 300 ms per hadronic event (simulated or real) on a FACOM M-382 computer.more » 3 refs., 5 figs.« less

Estimation of chromatic errors from broadband images for high contrast imaging

NASA Astrophysics Data System (ADS)

Sirbu, Dan; Belikov, Ruslan

2015-09-01

Usage of an internal coronagraph with an adaptive optical system for wavefront correction for direct imaging of exoplanets is currently being considered for many mission concepts, including as an instrument addition to the WFIRST-AFTA mission to follow the James Web Space Telescope. The main technical challenge associated with direct imaging of exoplanets with an internal coronagraph is to effectively control both the diffraction and scattered light from the star so that the dim planetary companion can be seen. For the deformable mirror (DM) to recover a dark hole region with sufficiently high contrast in the image plane, wavefront errors are usually estimated using probes on the DM. To date, most broadband lab demonstrations use narrowband filters to estimate the chromaticity of the wavefront error, but this reduces the photon flux per filter and requires a filter system. Here, we propose a method to estimate the chromaticity of wavefront errors using only a broadband image. This is achieved by using special DM probes that have sufficient chromatic diversity. As a case example, we simulate the retrieval of the spectrum of the central wavelength from broadband images for a simple shaped- pupil coronagraph with a conjugate DM and compute the resulting estimation error.

Evolution and propagation of the July 23, 2012, CME-driven shock: A 3-D MHD simulation result

NASA Astrophysics Data System (ADS)

Wu, S. T.; Dryer, Ph D., M.; Liou, K.; Wu, C. C.

2016-12-01

The interplanetary shock associated with the July 23, 2012 CME event is studied with the H3DMHD 3-D magnetohydrodynamic (MHD) simulation model. This backside CME event has been actively studied, probably due to its extremely fast propagating speed ( 2000 km/s) and large magnetic field magnitude ( 100 nT) at 1 AU. Some workers even compared this even with the Carrington event. In this study we focus on the acceleration and deceleration of the shock at the cobpoints. The H3DMHD is a data (photospheric magnetic field) driven model, which combines the HAF kinematic model for regions sunward of 18 Rs and the 3DMHD ideal MHD model for antisunward of 18 Rs up to 1.5 AU. To simulate the CME a gaussian velocity pulse is manually applied to the inner simulation boundary at 2.5 Rs above the flare site, with the initial peak velocity ( 3000 km/s) taken from the coronagraph measurements. In situ measurements of the solar wind parameters at STEREO-A are used to validate the simulation result, in particular the arrival time of the shock at STEREO-A. It is found, for this particular event, the CME-driven shock strength varies significantly across the shock surface. In general, the shock strength slowly weakened while propagating outward but stayed hypersonic (> Mach 5) for a cone shape region of a few 10's of degrees surrounding the shock nose. We will discuss our result in the context of the acceleration/deceleration of shock in a much slower background solar wind and the relationship of the shock strength with the flux of solar energetic particles observed by STEREO-A.

The GMT-Consortium Large Earth Finder (G-CLEF): an optical Echelle spectrograph for the Giant Magellan Telescope (GMT)

NASA Astrophysics Data System (ADS)

Szentgyorgyi, Andrew; Baldwin, Daniel; Barnes, Stuart; Bean, Jacob; Ben-Ami, Sagi; Brennan, Patricia; Budynkiewicz, Jamie; Chun, Moo-Young; Conroy, Charlie; Crane, Jeffrey D.; Epps, Harland; Evans, Ian; Evans, Janet; Foster, Jeff; Frebel, Anna; Gauron, Thomas; Guzmán, Dani; Hare, Tyson; Jang, Bi-Ho; Jang, Jeong-Gyun; Jordan, Andres; Kim, Jihun; Kim, Kang-Miin; Mendes de Oliveira, Claudia Mendes; Lopez-Morales, Mercedes; McCracken, Kenneth; McMuldroch, Stuart; Miller, Joseph; Mueller, Mark; Oh, Jae Sok; Onyuksel, Cem; Ordway, Mark; Park, Byeong-Gon; Park, Chan; Park, Sung-Joon; Paxson, Charles; Phillips, David; Plummer, David; Podgorski, William; Seifahrt, Andreas; Stark, Daniel; Steiner, Joao; Uomoto, Alan; Walsworth, Ronald; Yu, Young-Sam

2016-08-01

The GMT-Consortium Large Earth Finder (G-CLEF) will be a cross-dispersed, optical band echelle spectrograph to be delivered as the first light scientific instrument for the Giant Magellan Telescope (GMT) in 2022. G-CLEF is vacuum enclosed and fiber-fed to enable precision radial velocity (PRV) measurements, especially for the detection and characterization of low-mass exoplanets orbiting solar-type stars. The passband of G-CLEF is broad, extending from 3500Å to 9500Å. This passband provides good sensitivity at blue wavelengths for stellar abundance studies and deep red response for observations of high-redshift phenomena. The design of G-CLEF incorporates several novel technical innovations. We give an overview of the innovative features of the current design. G-CLEF will be the first PRV spectrograph to have a composite optical bench so as to exploit that material's extremely low coefficient of thermal expansion, high in-plane thermal conductivity and high stiffness-to-mass ratio. The spectrograph camera subsystem is divided into a red and a blue channel, split by a dichroic, so there are two independent refractive spectrograph cameras. The control system software is being developed in model-driven software context that has been adopted globally by the GMT. G-CLEF has been conceived and designed within a strict systems engineering framework. As a part of this process, we have developed a analytical toolset to assess the predicted performance of G-CLEF as it has evolved through design phases.

Removal of central obscuration and spider arm effects with beam-shaping coronagraphy

NASA Astrophysics Data System (ADS)

Abe, L.; Murakami, N.; Nishikawa, J.; Tamura, M.

2006-05-01

This paper describes a method for removing the effect of a centrally obscured aperture with additional spider arms in arbitrary geometrical configurations. The proposed method is based on a two-stage process where the light beam is first shaped to remove the central obscuration and spider arms, in order to feed a second, highly efficient coronagraph. The beam-shaping stage is a combination of a diffraction mask in the first focal plane and a complex amplitude filter located in the conjugate pupil. This paper specifically describes the case of using Lyot occulting masks and circular phase-shifting masks as diffracting components. The basic principle of the method is given along with an analytical description and numerical simulations. Substantial improvement in the performance of high-contrast coronagraphs can be obtained with this method, even if the beam-shaping filter is not perfectly manufactured.

The opto-mechanical design of the GMT-Consortium Large Earth Finder (G-CLEF)

NASA Astrophysics Data System (ADS)

Mueller, Mark; Szentgyorgyi, Andrew; Baldwin, Daniel; Bean, Jacob; Ben-Ami, Sagi; Brennan, Patricia; Budynkiewicz, J.; Chun, Moo-Yung; Crane, Jeffrey D.; Epps, Harland; Evans, Ian; Evans, Janet; Foster, Jeff; Frebel, Anna; Gauron, Thomas; Glenday, Alex; Hare, Tyson; Jang, Bi-Ho; Jang, Jeong-Gyun; Jordan, Andreas; Kim, Jihun; Kim, Kang-Min; Mendes de Oliveira, Claudia; Lopez-Morales, Mercedes; McCracken, Kenneth; McMuldroch, Stuart; Miller, Joseph; Oh, Jae Sok; Onyuksel, Cem; Ordway, Mark; Park, Chan; Park, Sung-Joon; Paxson, Charles; Phillips, David; Plummer, David; Podgorski, William; Seifahrt, Andreas; Steiner, Joao; Uomoto, Alan; Walsworth, Ronald; Yu, Young-Sam

2016-08-01

The GMT-Consortium Large Earth Finder (G-CLEF) is a fiber-fed, optical echelle spectrograph selected as the first light instrument for the Giant Magellan Telescope (GMT) now under construction at the Las Campanas Observatory in Chile. G-CLEF has been designed to be a general-purpose echelle spectrograph with precision radial velocity (PRV) capability for exoplanet detection. The radial velocity (RV) precision goal of G-CLEF is 10 cm/sec, necessary for detection of Earth-sized exoplanets. This goal imposes challenging stability requirements on the optical mounts and the overall spectrograph support structures especially when considering the instrument's operational environment. The accuracy of G-CLEF's PRV measurements will be influenced by minute changes in temperature and ambient air pressure as well as vibrations and micro gravity-vector variations caused by normal telescope slewing. For these reasons we have chosen to enclose G-CLEF's spectrograph in a well-insulated, vibration isolated vacuum chamber in a gravity invariant location on GMT's azimuth platform. Additional design constraints posed by the GMT telescope include: a limited space envelope, a thermal emission ceiling, and a maximum weight allowance. Other factors, such as manufacturability, serviceability, available technology and budget are also significant design drivers. All of the above considerations must be managed while ensuring performance requirements are achieved. In this paper, we discuss the design of G-CLEF's optical mounts and support structures including the choice of a low coefficient of thermal expansion (CTE) carbon-fiber optical bench to minimize the system's sensitivity to thermal soaks and gradients. We discuss design choices made to the vacuum chamber geared towards minimize the influence of daily ambient pressure variations on image motion during observation. We discuss the design of G-CLEF's insulated enclosure and thermal control systems which will maintain the spectrograph at

The opto-mechanical design of the GMT-consortium large earth finder (G-CLEF)

NASA Astrophysics Data System (ADS)

Mueller, Mark; Baldwin, Daniel; Bean, Jacob; Bergner, Henry; Bigelow, Bruce; Chun, Moo-Young; Crane, Jeffrey; Foster, Jeff; Fżrész, Gabor; Gauron, Thomas; Guzman, Dani; Hertz, Edward; Jordán, Andrés.; Kim, Kang-Min; McCracken, Kenneth; Norton, Timothy; Ordway, Mark; Park, Chan; Park, Sang; Podgorski, William A.; Szentgyorgyi, Andrew; Uomoto, Alan; Yuk, In-Soo

2014-08-01

The GMT-Consortium Large Earth Finder (G-CLEF) is a fiber fed, optical echelle spectrograph that has been selected as a first light instrument for the Giant Magellan Telescope (GMT) currently under construction at the Las Campanas Observatory in Chile's Atacama desert region. We designed G-CLEF as a general-purpose echelle spectrograph with precision radial velocity (PRV) capability used for exoplanet detection. The radial velocity (RV) precision goal of GCLEF is 10 cm/sec, necessary for detection of Earth-sized planets orbiting stars like our Sun in the habitable zone. This goal imposes challenging stability requirements on the optical mounts and the overall spectrograph support structures. Stability in instruments of this type is typically affected by changes in temperature, orientation, and air pressure as well as vibrations caused by telescope tracking. For these reasons, we have chosen to enclose G-CLEF's spectrograph in a thermally insulated, vibration isolated vacuum chamber and place it at a gravity invariant location on GMT's azimuth platform. Additional design constraints posed by the GMT telescope include: a limited space envelope, a thermal emission ceiling, and a maximum weight allowance. Other factors, such as manufacturability, serviceability, available technology and budget are also significant design drivers. All of the previously listed considerations must be managed while ensuring that performance requirements are achieved. In this paper, we discuss the design of G-CLEF's optical mounts and support structures including technical choices made to minimize the system's sensitivity to thermal gradients. A more general treatment of the properties of G-CLEF can be found elsewhere in these proceedings1. We discuss the design of the vacuum chamber which houses the irregularly shaped optical bench and optics while conforming to a challenging space envelope on GMT's azimuth platform. We also discuss the design of G-CLEF's insulated enclosure and thermal

The QuakeFinder Magnetometer Network - a Platform for Earth and Space Science Research

NASA Astrophysics Data System (ADS)

Bleier, T.; Kappler, K. N.; Schneider, D.

2016-12-01

QuakeFinder (QF) is a humanitarian research and development project attempting to characterize earth-emitting electromagnetic (EM) signals as potential precursors to earthquakes. Beginning in 2005, QF designed, built, deployed and now maintains an array of 165 remote monitoring stations in 6 countries (US/California, Taiwan, Greece, Indonesia, Peru and Chile). Having amassed approximately 70 TB of data and greater than 140 earthquakes (M4+), QF is focused on the data analysis and signal processing algorithms in our effort to enable a forecasting capability. QF's autonomous stations, located along major fault lines, collect and transmit electromagnetic readings from 3-axis induction magnetometers and positive/negative ion sensors, a geophone, as well as various station health status and local conditions. The induction magnetometers, oriented N-S,E-W and vertically, have a 40 nT range and 1 pT sensitivity. Data is continuously collected at 50 samples/sec (sps), GPS time-stamped and transmitted, primarily through cell phone networks, to our data center in Palo Alto, California. The induction magnetometers routinely detect subtle geomagnetic and ionospheric disturbances as observed worldwide. QF seeks to make available both historic data and the array platform to strategic partners in the EM-related research and operation fields. The QF system will be described in detail with examples of local and regional geomagnetic activity. The stations are robust and will be undergoing a system-level upgrade in the near future. Domestically, QF maintains a 98% `up time' among the 120 stations in California while internationally our metric is typically near 80%. Irregular cell phone reception is chief among the reasons for outages although little data has been lost as the stations can store up to 90 days of data. These data are retrieved by QF personnel or, when communication is reestablished, the QF data ingest process automatically updates the database. Planned station upgrades

MLSO Mark III K-Coronameter Observations of the CME Rate from 1989-1996

NASA Technical Reports Server (NTRS)

St Cyr, O. C.; Flint, Q. A.; Xie, H.; Webb, D. F.; Burkepile, J. T.; Lecinski, A. R.; Quirk, C.; Stanger, A. L.

2015-01-01

We report here an attempt to fill the 1990-1995 gap in the CME (coronal mass ejection) rate using the Mauna Loa Solar Observatory (MLSO)'s Mark III (Mk3) K-coronameter. The Mk3 instrument observed routinely several hours most days beginning in 1980 until it was upgraded to Mk4 in 1999. We describe the statistical properties of the CMEs detected during 1989-1996, and we determine a CME rate for each of those years. Since spaceborne coronagraphs have more complete duty cycles than a ground-based instrument at a single location, we compare the Mk3-derived CME rate from 1989 with the SMM C/P (Solar Maximum Mission Coronagraph/Polarimeter) coronagraph, and from 1996 with the SOHO (Solar and Hellospheric Observatory) LASCO (Large Angle and Spectrometric COronagraph) coronagraphs.

A 3D Voronoi+Gapper Galaxy Cluster Finder in Redshift Space to z ∼ 0.2 I: an Algorithm Optimized for the 2dFGRS

DOE Office of Scientific and Technical Information (OSTI.GOV)

Pereira, Sebastián; Campusano, Luis E.; Hitschfeld-Kahler, Nancy

This paper is the first in a series, presenting a new galaxy cluster finder based on a three-dimensional Voronoi Tesselation plus a maximum likelihood estimator, followed by gapping-filtering in radial velocity(VoML+G). The scientific aim of the series is a reassessment of the diversity of optical clusters in the local universe. A mock galaxy database mimicking the southern strip of the magnitude(blue)-limited 2dF Galaxy Redshift Survey (2dFGRS), for the redshift range 0.009 < z < 0.22, is built on the basis of the Millennium Simulation of the LCDM cosmology and a reference catalog of “Millennium clusters,” spannning across the 1.0 ×more » 10{sup 12}–1.0 × 10{sup 15} M {sub ⊙} h {sup −1} dark matter (DM) halo mass range, is recorded. The validation of VoML+G is performed through its application to the mock data and the ensuing determination of the completeness and purity of the cluster detections by comparison with the reference catalog. The execution of VoML+G over the 2dFGRS mock data identified 1614 clusters, 22% with N {sub g} ≥ 10, 64 percent with 10 > N {sub g} ≥ 5, and 14% with N {sub g} < 5. The ensemble of VoML+G clusters has a ∼59% completeness and a ∼66% purity, whereas the subsample with N {sub g} ≥ 10, to z ∼ 0.14, has greatly improved mean rates of ∼75% and ∼90%, respectively. The VoML+G cluster velocity dispersions are found to be compatible with those corresponding to “Millennium clusters” over the 300–1000 km s{sup −1} interval, i.e., for cluster halo masses in excess of ∼3.0 × 10{sup 13} M {sub ⊙} h {sup −1}.« less

A Demonstration of a Versatile Low-order Wavefront Sensor Tested on Multiple Coronographs

NASA Astrophysics Data System (ADS)

Singh, Garima; Lozi, Julien; Jovanovic, Nemanja; Guyon, Olivier; Baudoz, Pierre; Martinache, Frantz; Kudo, Tomoyuki

2017-09-01

Detecting faint companions in close proximity to stars is one of the major goals of current/planned ground- and space-based high-contrast imaging instruments. High-performance coronagraphs can suppress the diffraction features and gain access to companions at small angular separation. However, the uncontrolled pointing errors degrade the coronagraphic performance by leaking starlight around the coronagraphic focal-plane mask, preventing the detection of companions at small separations. A Lyot-stop low-order wavefront sensor (LLOWFS) was therefore introduced to calibrate and measure these aberrations for focal-plane phase mask coronagraphs. This sensor quantifies the variations in wavefront error decomposed into a few Zernike modes by reimaging the diffracted starlight rejected by a reflective Lyot stop. The technique was tested with several coronagraphs on the Subaru Coronagraphic Extreme Adaptive Optics (SCExAO) system at the Subaru Telescope. The wavefront was decomposed into 15 and 35 Zernike modes with an occulting and focal-plane phase mask coronagraph, respectively, which were used to drive a closed-loop correction in the laboratory. Using a 2000-actuator deformable mirror, a closed-loop pointing stability between 10-3-10-4 λ/D was achieved in the laboratory in H-band, with sub nanometer residuals for the other Zernike modes (Noll index > 4). On-sky, the low-order control of 10+ Zernike modes for the phase-induced amplitude apodization and the vector vortex coronagraphs was demonstrated, with a closed-loop pointing stability of {10}-4λ /D under good seeing and {10}-3λ /D under moderate seeing conditions readily achievable.

Multiple-Cone Sunshade for a Spaceborne Telescope

NASA Technical Reports Server (NTRS)

Cafferty, Terry; Ford, Virginia

2008-01-01

A document describes a sunshade assembly for the spaceborne telescope of the Terrestrial Planet Finder Coronagraph mission. During operation, the telescope is aimed at target stars in the semihemisphere away from the Earth's Sun. The observatory rotates about its pointing axis during a single star observation, resulting in relative movement of the Sun. The sunshade assembly protects the telescope against excessive solar-induced thermal distortions for times long enough to complete observations. The assembly includes a cylindrical baffle immediately surrounding the telescope, and a series of coaxial conical shields at half-cone angle increments of between 3 and 6. The black inner surface of the cylindrical baffle suppresses stray light. The outer surface of the cylindrical baffle and all the surfaces of the conical shields except the outermost one are specular and highly reflective in the infrared. The outer surface of the outer shield is a material with low solar absorptance and high infrared emittance, such as silverized Teflon or white paint. This arrangement strongly radiatively couples each shield layer more effectively to cold space than to adjacent shield layers. The result is that the solar-driven temperature gradients in the cylindrical baffle are nearly negated, and only weakly communicated to the highly-infrared-reflective face of the primary telescope mirror.

Enceladus life finder: the search for life in a habitable moon.

NASA Astrophysics Data System (ADS)

Lunine, Jonathan; Waite, Hunter; Postberg, Frank; Spilker, Linda; Clark, Karla

2015-04-01

Is there life elsewhere in the solar system? Guided by the principle that we can most easily recognize life as we know it -- life that requires liquid water -- Enceladus is particularly attractive because liquid water from its deep interior is actively erupting into space, making sampling of the interior straightforward. The Cassini Saturn Orbiter has provided the motivation. In particular, at high resolution, spatial coincidences between individual geysers and small-scale hot spots revealed the liquid reservoir supplying the eruptions to be not in the near-surface but deeper within the moon [1], putting on a firm foundation the principle that sampling the plume allows us to know the composition of the ocean. Sensitive gravity and topography measurements established the location and dimensions of that reservoir: ~ 35 km beneath the SPT ice shell and extending out to at least 50 degrees latitude, implying an interior ocean large enough to have been stable over geologic time [2]. The Cassini ion neutral mass spectrometer (INMS) discovered organic and nitrogen-bearing molecules in the plume vapour, and the Cosmic Dust Analyser (CDA) detected salts in the plume icy grains, arguing strongly for ocean water being in con-tact with a rocky core [3], [4]. As much as Cassini has done, it cannot provide detailed information on the ocean environment that allow for a quantitative assessment of the potential for life. Acquiring such knowledge represents the essential first step in characterizing the nature of the subsurface ocean and its biological potential. Enceladus Life Finder, or ELF, is a solar-powered Saturn orbiter designed to fly multiple times through the plume of Enceladus.The goals of the mission are derived directly from the most recent decadal survey: first, to determine primordial sources of organics and the sites of organic synthesis today, and second, to determine if there are modern habitats in the solar system beyond Earth where the conditions for life exist

Intermittent Reconnection Downflow Enhancements In A Simulated Flux Rope Eruption

NASA Astrophysics Data System (ADS)

Kliem, Bernhard; Linton, M. G.

2009-05-01

Supra-arcade downflows in X-ray and EUV flare emissions and post-eruption inflows in coronagraph data have been interpreted to be signatures of the downward reconnection outflow from a vertical (flare) current sheet. These downflows show an intermittent occurrence pattern, indicating that the reconnection is bursty in time or patchy in space, or both. We present MHD simulations of such reconnection in the realistic configuration of a vertical current sheet formed beneath and driven by an erupting flux rope. The reconnection is found to develop bursty outflows, both upward and downward, with the upward outflows generally showing the stronger variablity. While the reconnection starts early in the rise of the flux rope and its peak upward outflow velocity is closely correlated with the rope's rise velocity, the burstiness develops in a clear fashion only as the rope's height has increased from the initial position by about an order of magnitude, so that the current sheet has reached a sufficient vertical extent. The reconnection downflow shows a series of enhancements, each of them starting at a successively greater height from a newly developed magnetic X line. The plasma temporarily accelerated downward in such an enhancement soon turns into a gradual deceleration and then eventually comes to rest on top of previously accelerated plasma. These findings are consistent with the observations of intermittent downflows.

Optimal wavefront estimation of incoherent sources

NASA Astrophysics Data System (ADS)

Riggs, A. J. Eldorado; Kasdin, N. Jeremy; Groff, Tyler

2014-08-01

Direct imaging is in general necessary to characterize exoplanets and disks. A coronagraph is an instrument used to create a dim (high-contrast) region in a star's PSF where faint companions can be detected. All coronagraphic high-contrast imaging systems use one or more deformable mirrors (DMs) to correct quasi-static aberrations and recover contrast in the focal plane. Simulations show that existing wavefront control algorithms can correct for diffracted starlight in just a few iterations, but in practice tens or hundreds of control iterations are needed to achieve high contrast. The discrepancy largely arises from the fact that simulations have perfect knowledge of the wavefront and DM actuation. Thus, wavefront correction algorithms are currently limited by the quality and speed of wavefront estimates. Exposures in space will take orders of magnitude more time than any calculations, so a nonlinear estimation method that needs fewer images but more computational time would be advantageous. In addition, current wavefront correction routines seek only to reduce diffracted starlight. Here we present nonlinear estimation algorithms that include optimal estimation of sources incoherent with a star such as exoplanets and debris disks.

Simulation of Tropical Pacific and Atlantic Oceans Using a HYbrid Coordinate Ocean Model

DTIC Science & Technology

2005-01-01

with respect to cotemporal 1m temperature measured by buoys. The cli- matology was created by averaging into monthly means, then calculating...inconsistency could result in part from the different temporal averaging intervals of the two temperature climatologies. This question is further assessed in...observational temperature datasets (drifter and Path- finder) have different temporal averaging intervals. This question is further assessed in

A Harmonic Motion Experiment

ERIC Educational Resources Information Center

Gluck, P.; Krakower, Zeev

2010-01-01

We present a unit comprising theory, simulation and experiment for a body oscillating on a vertical spring, in which the simultaneous use of a force probe and an ultrasonic range finder enables one to explore quantitatively and understand many aspects of simple and damped harmonic motions. (Contains 14 figures.)

Sun-to-Earth simulations of geo-effective Coronal Mass Ejections with EUHFORIA: a heliospheric-magnetospheric model chain approach

NASA Astrophysics Data System (ADS)

Scolini, C.; Verbeke, C.; Gopalswamy, N.; Wijsen, N.; Poedts, S.; Mierla, M.; Rodriguez, L.; Pomoell, J.; Cramer, W. D.; Raeder, J.

2017-12-01

Coronal Mass Ejections (CMEs) and their interplanetary counterparts are considered to be the major space weather drivers. An accurate modelling of their onset and propagation up to 1 AU represents a key issue for more reliable space weather forecasts, and predictions about their actual geo-effectiveness can only be performed by coupling global heliospheric models to 3D models describing the terrestrial environment, e.g. magnetospheric and ionospheric codes in the first place. In this work we perform a Sun-to-Earth comprehensive analysis of the July 12, 2012 CME with the aim of testing the space weather predictive capabilities of the newly developed EUHFORIA heliospheric model integrated with the Gibson-Low (GL) flux rope model. In order to achieve this goal, we make use of a model chain approach by using EUHFORIA outputs at Earth as input parameters for the OpenGGCM magnetospheric model. We first reconstruct the CME kinematic parameters by means of single- and multi- spacecraft reconstruction methods based on coronagraphic and heliospheric CME observations. The magnetic field-related parameters of the flux rope are estimated based on imaging observations of the photospheric and low coronal source regions of the eruption. We then simulate the event with EUHFORIA, testing the effect of the different CME kinematic input parameters on simulation results at L1. We compare simulation outputs with in-situ measurements of the Interplanetary CME and we use them as input for the OpenGGCM model, so to investigate the magnetospheric response to solar perturbations. From simulation outputs we extract some global geomagnetic activity indexes and compare them with actual data records and with results obtained by the use of empirical relations. Finally, we discuss the forecasting capabilities of such kind of approach and its future improvements.

Validation of a new method for finding the rotational axes of the knee using both marker-based roentgen stereophotogrammetric analysis and 3D video-based motion analysis for kinematic measurements.

PubMed

Roland, Michelle; Hull, M L; Howell, S M

2011-05-01

In a previous paper, we reported the virtual axis finder, which is a new method for finding the rotational axes of the knee. The virtual axis finder was validated through simulations that were subject to limitations. Hence, the objective of the present study was to perform a mechanical validation with two measurement modalities: 3D video-based motion analysis and marker-based roentgen stereophotogrammetric analysis (RSA). A two rotational axis mechanism was developed, which simulated internal-external (or longitudinal) and flexion-extension (FE) rotations. The actual axes of rotation were known with respect to motion analysis and RSA markers within ± 0.0006 deg and ± 0.036 mm and ± 0.0001 deg and ± 0.016 mm, respectively. The orientation and position root mean squared errors for identifying the longitudinal rotation (LR) and FE axes with video-based motion analysis (0.26 deg, 0.28 m, 0.36 deg, and 0.25 mm, respectively) were smaller than with RSA (1.04 deg, 0.84 mm, 0.82 deg, and 0.32 mm, respectively). The random error or precision in the orientation and position was significantly better (p=0.01 and p=0.02, respectively) in identifying the LR axis with video-based motion analysis (0.23 deg and 0.24 mm) than with RSA (0.95 deg and 0.76 mm). There was no significant difference in the bias errors between measurement modalities. In comparing the mechanical validations to virtual validations, the virtual validations produced comparable errors to those of the mechanical validation. The only significant difference between the errors of the mechanical and virtual validations was the precision in the position of the LR axis while simulating video-based motion analysis (0.24 mm and 0.78 mm, p=0.019). These results indicate that video-based motion analysis with the equipment used in this study is the superior measurement modality for use with the virtual axis finder but both measurement modalities produce satisfactory results. The lack of significant differences between

Scale Estimation and Correction of the Monocular Simultaneous Localization and Mapping (SLAM) Based on Fusion of 1D Laser Range Finder and Vision Data.

PubMed

Zhang, Zhuang; Zhao, Rujin; Liu, Enhai; Yan, Kun; Ma, Yuebo

2018-06-15

This article presents a new sensor fusion method for visual simultaneous localization and mapping (SLAM) through integration of a monocular camera and a 1D-laser range finder. Such as a fusion method provides the scale estimation and drift correction and it is not limited by volume, e.g., the stereo camera is constrained by the baseline and overcomes the limited depth range problem associated with SLAM for RGBD cameras. We first present the analytical feasibility for estimating the absolute scale through the fusion of 1D distance information and image information. Next, the analytical derivation of the laser-vision fusion is described in detail based on the local dense reconstruction of the image sequences. We also correct the scale drift of the monocular SLAM using the laser distance information which is independent of the drift error. Finally, application of this approach to both indoor and outdoor scenes is verified by the Technical University of Munich dataset of RGBD and self-collected data. We compare the effects of the scale estimation and drift correction of the proposed method with the SLAM for a monocular camera and a RGBD camera.

THE CENTER OF LIGHT: SPECTROASTROMETRIC DETECTION OF EXOMOONS

DOE Office of Scientific and Technical Information (OSTI.GOV)

Agol, Eric; Jansen, Tiffany; Lacy, Brianna

2015-10-10

Direct imaging of extrasolar planets with future space-based coronagraphic telescopes may provide a means of detecting companion moons at wavelengths where the moon outshines the planet. We propose a detection strategy based on the positional variation of the center of light with wavelength, “spectroastrometry.” This new application of this technique could be used to detect an exomoon, to determine the exomoon’s orbit and the mass of the host exoplanet, and to disentangle the spectra of the planet and moon. We consider two model systems, for which we discuss the requirements for detection of exomoons around nearby stars. We simulate themore » characterization of an Earth–Moon analog system with spectroastrometry, showing that the orbit, the planet mass, and the spectra of both bodies can be recovered. To enable the detection and characterization of exomoons we recommend that coronagraphic telescopes should extend in wavelength coverage to 3 μm, and should be designed with spectroastrometric requirements in mind.« less

FASTPM: a new scheme for fast simulations of dark matter and haloes

NASA Astrophysics Data System (ADS)

Feng, Yu; Chu, Man-Yat; Seljak, Uroš; McDonald, Patrick

2016-12-01

We introduce FASTPM, a highly scalable approximated particle mesh (PM) N-body solver, which implements the PM scheme enforcing correct linear displacement (1LPT) evolution via modified kick and drift factors. Employing a two-dimensional domain decomposing scheme, FASTPM scales extremely well with a very large number of CPUs. In contrast to Comoving-Lagrangian (COLA) approach, we do not require to split the force or track separately the 2LPT solution, reducing the code complexity and memory requirements. We compare FASTPM with different number of steps (Ns) and force resolution factor (B) against three benchmarks: halo mass function from friends-of-friends halo finder; halo and dark matter power spectrum; and cross-correlation coefficient (or stochasticity), relative to a high-resolution TREEPM simulation. We show that the modified time stepping scheme reduces the halo stochasticity when compared to COLA with the same number of steps and force resolution. While increasing Ns and B improves the transfer function and cross-correlation coefficient, for many applications FASTPM achieves sufficient accuracy at low Ns and B. For example, Ns = 10 and B = 2 simulation provides a substantial saving (a factor of 10) of computing time relative to Ns = 40, B = 3 simulation, yet the halo benchmarks are very similar at z = 0. We find that for abundance matched haloes the stochasticity remains low even for Ns = 5. FASTPM compares well against less expensive schemes, being only 7 (4) times more expensive than 2LPT initial condition generator for Ns = 10 (Ns = 5). Some of the applications where FASTPM can be useful are generating a large number of mocks, producing non-linear statistics where one varies a large number of nuisance or cosmological parameters, or serving as part of an initial conditions solver.