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Sample records for fine-scale oscillatory banding

  1. Fine-scale oscillatory banding in otoliths from arctic charr (Salveninus alpinus) and pike (Esox lucius)

    SciTech Connect

    Meldrum, A.; Halden, N.M.

    1997-12-31

    Transmission electron microscopy of otoliths from the inner ear of arctic charr and pike has revealed the presence of fine banding on the scale of several nanometers. The thickness of the bands was observed to vary in different portions of the sample, and some areas were not banded. EDS analysis could not detect chemical differences within the bands, but electron diffraction showed that the crystallographic orientation of the bands is related by a lattice mismatch. Previously, banding on the scale of 50 to 100 microns was observed by SEM in otoliths from arctic charr and was attributed to seasonal variations in growth. The fine-scale banding observed in this study, however, is unlikely to represent a daily variation. Electron diffraction from the pike samples shows that the material is composed of CaCO{sub 3} having the both the vaterite and aragonite structure, and hydrous CaCO{sub 3} was also observed. The large-scale banding previously identified by SEM was not observed in the TEM despite attempts to intersect the boundaries of the micron-sized layers. The interaction of the electron beam with the sample material was investigated by conducting several electron-irradiation experiments. The electron beam was observed to interact strongly with the sample and caused the precipitation of cubic CaO from the calcium carbonate matrix. Bright-field imaging showed the development of fine grained ({approximately} 5 nm) randomly oriented crystallites which accumulated with increasing electron dose. These initial results suggest that the precipitation of CaO is not driven by electron-beam beating. Previously, a similar phase-change phenomenon has been observed in hydroxyapatite from dental enamel. Other Ca-bearing biominerals may therefore also be expected to be sensitive to electron irradiation.

  2. Fine-Scale Skeletal Banding Can Distinguish Symbiotic from Asymbiotic Species among Modern and Fossil Scleractinian Corals.

    PubMed

    Frankowiak, Katarzyna; Kret, Sławomir; Mazur, Maciej; Meibom, Anders; Kitahara, Marcelo V; Stolarski, Jarosław

    2016-01-01

    Understanding the evolution of scleractinian corals on geological timescales is key to predict how modern reef ecosystems will react to changing environmental conditions in the future. Important to such efforts has been the development of several skeleton-based criteria to distinguish between the two major ecological groups of scleractinians: zooxanthellates, which live in symbiosis with dinoflagellate algae, and azooxanthellates, which lack endosymbiotic dinoflagellates. Existing criteria are based on overall skeletal morphology and bio/geo-chemical indicators-none of them being particularly robust. Here we explore another skeletal feature, namely fine-scale growth banding, which differs between these two groups of corals. Using various ultra-structural imaging techniques (e.g., TEM, SEM, and NanoSIMS) we have characterized skeletal growth increments, composed of doublets of optically light and dark bands, in a broad selection of extant symbiotic and asymbiotic corals. Skeletons of zooxanthellate corals are characterized by regular growth banding, whereas in skeletons of azooxanthellate corals the growth banding is irregular. Importantly, the regularity of growth bands can be easily quantified with a coefficient of variation obtained by measuring bandwidths on SEM images of polished and etched skeletal surfaces of septa and/or walls. We find that this coefficient of variation (lower values indicate higher regularity) ranges from ~40 to ~90% in azooxanthellate corals and from ~5 to ~15% in symbiotic species. With more than 90% (28 out of 31) of the studied corals conforming to this microstructural criterion, it represents an easy and robust method to discriminate between zooxanthellate and azooxanthellate corals. This microstructural criterion has been applied to the exceptionally preserved skeleton of the Triassic (Norian, ca. 215 Ma) scleractinian Volzeia sp., which contains the first example of regular, fine-scale banding of thickening deposits in a fossil coral

  3. Fine-Scale Skeletal Banding Can Distinguish Symbiotic from Asymbiotic Species among Modern and Fossil Scleractinian Corals

    PubMed Central

    Frankowiak, Katarzyna; Kret, Sławomir; Mazur, Maciej; Meibom, Anders; Kitahara, Marcelo V.; Stolarski, Jarosław

    2016-01-01

    Understanding the evolution of scleractinian corals on geological timescales is key to predict how modern reef ecosystems will react to changing environmental conditions in the future. Important to such efforts has been the development of several skeleton-based criteria to distinguish between the two major ecological groups of scleractinians: zooxanthellates, which live in symbiosis with dinoflagellate algae, and azooxanthellates, which lack endosymbiotic dinoflagellates. Existing criteria are based on overall skeletal morphology and bio/geo-chemical indicators—none of them being particularly robust. Here we explore another skeletal feature, namely fine-scale growth banding, which differs between these two groups of corals. Using various ultra-structural imaging techniques (e.g., TEM, SEM, and NanoSIMS) we have characterized skeletal growth increments, composed of doublets of optically light and dark bands, in a broad selection of extant symbiotic and asymbiotic corals. Skeletons of zooxanthellate corals are characterized by regular growth banding, whereas in skeletons of azooxanthellate corals the growth banding is irregular. Importantly, the regularity of growth bands can be easily quantified with a coefficient of variation obtained by measuring bandwidths on SEM images of polished and etched skeletal surfaces of septa and/or walls. We find that this coefficient of variation (lower values indicate higher regularity) ranges from ~40 to ~90% in azooxanthellate corals and from ~5 to ~15% in symbiotic species. With more than 90% (28 out of 31) of the studied corals conforming to this microstructural criterion, it represents an easy and robust method to discriminate between zooxanthellate and azooxanthellate corals. This microstructural criterion has been applied to the exceptionally preserved skeleton of the Triassic (Norian, ca. 215 Ma) scleractinian Volzeia sp., which contains the first example of regular, fine-scale banding of thickening deposits in a fossil

  4. Shear bands in concentrated bacterial suspensions under oscillatory shear

    NASA Astrophysics Data System (ADS)

    Cheng, Xiang; Samanta, Devranjan; Xu, Xinliang

    2016-11-01

    Bacterial suspensions show interesting rheological behaviors such as a remarkable "superfluidic" state with vanishing viscosity. Although the bulk rheology of bacterial suspensions has been experimentally studied, shear profiles within bacterial suspensions have not been systematically explored so far. Here, by combining confocal rheometry with PIV, we investigated the flow behaviors of concentrated E. coli suspensions under planar oscillatory shear. We found that concentrated bacterial suspensions exhibit strong non-homogeneous flow profiles at low shear rates, where shear rates vanish away from the moving shear plate. We characterized the shape of the nonlinear shear profiles at different applied shear rates and bacterial concentrations and activities. The shear profiles follow a simple scaling relation with the applied shear rates and the enstrophy of suspensions, unexpected from the current hydrodynamic models of active fluids. We demonstrated that this scaling relation can be quantitatively understood by considering the power output of bacteria at different orientations with respect to shear flows. Our experiments reveal a profound influence of shear flows on the locomotion of bacteria and provide new insights into the dynamics of active fluids. The research is funded by ACS Petroleum Research Fund (54168-DNI9) and by the David & Lucile Packard Foundation. X. X. acknowledges support by the National Natural Science Foundation of China No. 11575020.

  5. Shear Banding of Soft Glassy Materials in Large Amplitude Oscillatory Shear

    NASA Astrophysics Data System (ADS)

    Radhakrishnan, Rangarajan; Fielding, Suzanne M.

    2016-10-01

    We study shear banding in soft glassy materials subject to a large amplitude oscillatory shear flow (LAOS). By numerical simulations of the widely used soft glassy rheology model, supplemented by more general physical arguments, we demonstrate strong banding over an extensive range of amplitudes and frequencies of the imposed shear rate γ ˙(t )=γ˙0cos (ω t ), even in materials that do not permit banding as their steady state response to a steadily imposed shear flow γ ˙=γ˙0=const. Highly counterintuitively, banding persists in LAOS even in the limit of zero frequency ω →0 , where one might a priori have expected a homogeneous flow response in a material that does not display banding under conditions of steadily imposed shear. We explain this finding in terms of an alternating competition within each cycle between glassy aging and flow rejuvenation. Our predictions have far-reaching implications for the flow behavior of aging yield stress fluids, suggesting a generic expectation of shear banding in flows of even arbitrarily slow time variation.

  6. Throwing out the rules: anticipatory alpha-band oscillatory attention mechanisms during task-set reconfigurations

    PubMed Central

    Foxe, John J.; Murphy, Jeremy W.; De Sanctis, Pierfilippo

    2015-01-01

    We assessed the role of alpha-band oscillatory activity during a task-switching design that required participants to switch between an auditory and a visual task, while task-relevant audio-visual inputs were simultaneously presented. Instructional cues informed participants which task to perform on a given trial and we assessed alpha-band power in the short 1.35-second period intervening between the cue and the task-imperative stimuli, on the premise that attentional biasing mechanisms would be deployed to resolve competition between the auditory and visual inputs. Prior work had shown that alpha-band activity was differentially deployed depending on the modality of the cued task. Here, we asked whether this activity would, in turn, be differentially deployed depending on whether participants had just made a switch of task, or were being asked to simply repeat the task. It is well-established that performance speed and accuracy are poorer on switch than on repeat trials. Here, however, the use of instructional cues completely mitigated these classic switch-costs. Measures of alpha-band synchronization/desynchronization showed that there was indeed greater and earlier differential deployment of alpha-band activity on switch versus repeat trials. Contrary to our hypothesis, this differential effect was entirely due to changes in the amount of desynchronization observed during switch and repeat trials of the visual task, with more desynchronization over both posterior and frontal scalp regions during switch-visual trials. These data imply that particularly vigorous, and essentially fully effective, anticipatory biasing mechanisms resolved the competition between competing auditory and visual inputs when a rapid switch of task was required. PMID:24689983

  7. Susceptibility to distraction in autism spectrum disorder: Probing the integrity of oscillatory alpha-band suppression mechanisms

    PubMed Central

    Murphy, Jeremy W.; Foxe, John J.; Peters, Joanna B.; Molholm, Sophie

    2014-01-01

    Scientific Abstract When attention is directed to one information stream over another, the brain can be configured in advance to selectively process the relevant stream and suppress potentially distracting inputs. One key mechanism of suppression is through the deployment of anticipatory alpha-band (~10Hz) oscillatory activity, with greater alpha-band power observed in cortical regions that will ultimately process the distracting stream. Atypical attention has been implicated in autism spectrum disorder (ASD), including greater interference by distracting task-irrelevant inputs. Here we tested the integrity of these alpha-band mechanisms in ASD using an intersensory attention task. EEG was recorded while participants were cued on a trial-by-trial basis to selectively deploy attention to the visual or auditory modality in anticipation of a target within the cued modality. Whereas typically developing children showed the predicted alpha-band modulation, with increased alpha-band power over parieto-occipital scalp when attention was deployed to the auditory compared to the visual modality, this differential pattern was entirely absent at the group level in the ASD cohort. Further, only the ASD group showed impaired performance due to the presence of task-irrelevant sensory information. These data suggest that impaired modulation of alpha-band activity plays a role in increased distraction from extraneous sensory inputs in ASD. PMID:24678054

  8. Oscillatory Alpha-Band Suppression Mechanisms during the Rapid Attentional Shifts Required to Perform an Anti-Saccade Task

    PubMed Central

    Belyusar, Daniel; Snyder, Adam C.; Frey, Hans-Peter; Harwood, Mark R.; Wallman, Josh; Foxe, John J.

    2015-01-01

    Neuroimaging has demonstrated anatomical overlap between covert and overt attention systems, although behavioral and electrophysiological studies have suggested that the two systems do not rely on entirely identical circuits or mechanisms. In a parallel line of research, topographically-specific modulations of alpha-band power (~8-14Hz) have been consistently correlated with anticipatory states during tasks requiring covert attention shifts. These tasks, however, typically employ cue-target-interval paradigms where attentional processes are examined across relatively protracted periods of time and not at the rapid timescales implicated during overt attention tasks. The anti-saccade task, where one must first covertly attend for a peripheral target, before executing a rapid overt attention shift (i.e. a saccade) to the opposite side of space, is particularly well-suited for examining the rapid dynamics of overt attentional deployments. Here, we asked whether alpha-band oscillatory mechanisms would also be associated with these very rapid overt shifts, potentially representing a common neural mechanism across overt and covert attention systems. High-density electroencephalography in conjunction with infra-red eye-tracking was recorded while participants engaged in both pro- and anti- saccade task blocks. Alpha power, time-locked to saccade onset, showed three distinct phases of significantly lateralized topographic shifts, all occurring within a period of less than one second, closely reflecting the temporal dynamics of anti-saccade performance. Only two such phases were observed during the pro-saccade task. These data point to substantially more rapid temporal dynamics of alpha-band suppressive mechanisms than previously established, and implicate oscillatory alpha-band activity as a common mechanism across both overt and covert attentional deployments. PMID:23041338

  9. Fine-scale characteristics of interplanetary sector

    NASA Technical Reports Server (NTRS)

    Behannon, K. W.; Neubauer, F. M.; Barnstoff, H.

    1980-01-01

    The structure of the interplanetary sector boundaries observed by Helios 1 within sector transition regions was studied. Such regions consist of intermediate (nonspiral) average field orientations in some cases, as well as a number of large angle directional discontinuities (DD's) on the fine scale (time scales 1 hour). Such DD's are found to be more similar to tangential than rotational discontinuities, to be oriented on average more nearly perpendicular than parallel to the ecliptic plane to be accompanied usually by a large dip ( 80%) in B and, with a most probable thickness of 3 x 10 to the 4th power km, significantly thicker previously studied. It is hypothesized that the observed structures represent multiple traversals of the global heliospheric current sheet due to local fluctuations in the position of the sheet. There is evidence that such fluctuations are sometimes produced by wavelike motions or surface corrugations of scale length 0.05 - 0.1 AU superimposed on the large scale structure.

  10. Geomedia: Mapping Colorado at a fine scale

    USGS Publications Warehouse

    Orndorff, R.

    2003-01-01

    Currently, only 24 percent of Colorado's spectacular geology has been mapped at the fine scale of 1:24,000. At the same time, the state hosts many geologic hazards. Most maps of Colorado are at much broader scales, failing to show detail of basic geology crucial to safe engineering and building practices in a state that had the third-fastest-growing population during the 1990s. And the 2000 Census showed that the state, despite some economic woes, remains one of the fastest growing. Detailed geologic maps also aid the mineral industries that help fuel such growth. Since 1992, the Colorado Geological Survey (CGS) has mapped 1:24,000-scale quadrangles in high-impact areas under the STATEMAP component of the National Cooperative Geologic Mapping Program. In 2002, CGS completed its 43rd geologic quadrangle map. The long-range plan for the state is to complete 116 high-priority quadrangles in the next 15 years. The survey's approach is to select rapidly growing areas with relatively high potential for hazards and map contiguous quadrangles. In addition to mapping bedrock, CGS geologists have mapped the Quaternary deposits at the surface. Understanding these deposits is extremely important for implementing sound engineering practices because of potential for subsidence and landslides. The CGS mapping has not only yielded information about potential hazards, but also advanced scientific understanding of the state.

  11. The effects of L-theanine on alpha-band oscillatory brain activity during a visuo-spatial attention task.

    PubMed

    Gomez-Ramirez, Manuel; Kelly, Simon P; Montesi, Jennifer L; Foxe, John J

    2009-06-01

    Background/Objectives Ingestion of the non-proteinic amino acid L-theanine (gamma-glutamylethylamide) has been shown to influence oscillatory brain activity in the alpha band (8-14 Hz) in humans during resting electroencephalographic (EEG) recordings and also during cognitive task performance. We have previously shown that ingestion of a 250-mg dose of L-theanine significantly reduced tonic (background) alpha power during a demanding intersensory (auditory-visual) attentional cueing task. Further, cue-related phasic changes in alpha power, indexing the shorter-term anticipatory biasing of attention between modalities, were stronger on L-theanine compared to placebo. This form of cue-contingent phasic alpha activity is also known to index attentional biasing within visual space. Specifically, when a relevant location is pre-cued, anticipatory alpha power increases contralateral to the location to be ignored. Here we investigate whether the effects of L-theanine on tonic and phasic alpha activity, found previously during intersensory attentional deployment, occur also during a visuospatial task. Subjects/Methods 168-channel EEG data were recorded from thirteen neurologically normal individuals while engaged in a highly demanding visuo-spatial attention task. Participants underwent testing on two separate days, ingesting either a 250-mg colorless and tasteless solution of L-theanine mixed with water, or a water-based solution placebo on each day in counterbalanced order. We compared the alpha-band activity when subjects ingested L-Theanine vs. Placebo. Results We found a significant reduction in tonic alpha for the L-theanine treatment compared to placebo, which was accompanied by a shift in scalp topography, indicative of treatment-related changes in the neural generators of oscillatory alpha activity. However, L-theanine did not measurably affect cue-related anticipatory alpha effects. Conclusions This pattern of results implies that L-theanine plays a more general

  12. Temporal expectation and attention jointly modulate auditory oscillatory activity in the beta band.

    PubMed

    Todorovic, Ana; Schoffelen, Jan-Mathijs; van Ede, Freek; Maris, Eric; de Lange, Floris P

    2015-01-01

    The neural response to a stimulus is influenced by endogenous factors such as expectation and attention. Current research suggests that expectation and attention exert their effects in opposite directions, where expectation decreases neural activity in sensory areas, while attention increases it. However, expectation and attention are usually studied either in isolation or confounded with each other. A recent study suggests that expectation and attention may act jointly on sensory processing, by increasing the neural response to expected events when they are attended, but decreasing it when they are unattended. Here we test this hypothesis in an auditory temporal cueing paradigm using magnetoencephalography in humans. In our study participants attended to, or away from, tones that could arrive at expected or unexpected moments. We found a decrease in auditory beta band synchrony to expected (versus unexpected) tones if they were unattended, but no difference if they were attended. Modulations in beta power were already evident prior to the expected onset times of the tones. These findings suggest that expectation and attention jointly modulate sensory processing.

  13. Impairments in Background and Event-Related Alpha-Band Oscillatory Activity in Patients with Schizophrenia

    PubMed Central

    Abeles, Ilana Y.; Gomez-Ramirez, Manuel

    2014-01-01

    Studies show that patients with schizophrenia exhibit impaired responses to sensory stimuli, especially at the early stages of neural processing. In particular, patients’ alpha-band (8–14 Hz) event-related desynchronization (ERD) and visual P1 event-related potential (ERP) component tend to be significantly reduced, with P1 ERP deficits greater for visual stimuli biased towards the magnocellular system. In healthy controls, studies show that pre-stimulus alpha (background alpha) plays a pivotal role in sensory processing and behavior, largely by shaping the neural responses to incoming stimuli. Here, we address whether patients’ ERD and P1 deficits stem from impairments in pre-stimulus alpha mechanisms. To address this question we recorded electrophysiological activity in patients with schizophrenia and healthy controls while they engaged in a visual discrimination task with low, medium, and high contrast stimuli. The results revealed a significant decrease in patients’ ERDs, which was largely driven by reductions in pre-stimulus alpha. These reductions were most prominent in right-hemispheric areas. We also observed a systematic relationship between pre-stimulus alpha and the P1 component across different contrast levels. However, this relationship was only observed in healthy controls. Taken together, these findings highlight a substantial anomaly in patients’ amplitude-based alpha background activity over visual areas. The results provide further support that pre-stimulus alpha activity plays an active role in perception by modulating the neural responses to incoming sensory inputs, a mechanism that seems to be compromised in schizophrenia. PMID:24646909

  14. Landscape and fine scale habitat associations of the Loggerhead Shrike

    USGS Publications Warehouse

    Michaels, H.L.; Cully, J.E.

    1998-01-01

    This study was conducted to determine landscape and fine-scale vegetative variables associated with breeding Loggerhead Shrikes (Lanius ludovicianus) on Fort Riley Military Reservation, Kansas. Because Fort Riley is an Army training site, the influences of training disturbance to the vegetation, and range management practices on bird habitat patterns were also investigated. Breeding birds were surveyed in 1995 and 1996 using point counts. Survey plots were identified, a priori, at the landscape scale as either grassland, savannah, or woodland edge according to cover by woody vegetation. In 1996, fine-scale habitat at survey points and at bird use sites was measured and a principal components analysis used to characterize the fine-scale herbaceous vegetation structure. A military disturbance index was developed to quantify the severity of vehicle disturbance to the vegetation at survey and bird use sites. Shrikes were associated with savannah habitat at the landscape scale. Sites used by Loggerhead Shrikes were characterized at the fine-scale by tall, sparse, structurally heterogeneous herbaceous vegetation with high standing dead plant cover and low litter cover. At the fine-scale, tree and shrub density did not differ between sites used and not used by shrikes. Used sites did not differ from survey sites with respect to military training disturbance, hay harvest, or the number of years since a site was last burned. Our results in this study suggest that the shifting mosaic of vegetation on Fort Riley resulting from training and range management practices maintains adequate habitat for breeding shrikes.

  15. On the Lundgren-Townsend model of turbulent fine scales

    NASA Astrophysics Data System (ADS)

    Pullin, D. I.; Saffman, P. G.

    1993-01-01

    Vorticity and velocity-derivative moments for homogeneous isotropic turbulence are calculated using the strained-spiral vortex model of turbulent fine scales given by Lundgren (1982). A specific form of the relaxing spiral vortex is proposed, modeled by a rolling-up vortex layer embedded in a background containing opposite signed vorticity and with zero total circulation at infinity.

  16. Anticipatory attentional suppression of visual features indexed by oscillatory alpha-band power increases: a high-density electrical mapping study.

    PubMed

    Snyder, Adam C; Foxe, John J

    2010-03-17

    Retinotopically specific increases in alpha-band ( approximately 10 Hz) oscillatory power have been strongly implicated in the suppression of processing for irrelevant parts of the visual field during the deployment of visuospatial attention. Here, we asked whether this alpha suppression mechanism also plays a role in the nonspatial anticipatory biasing of feature-based attention. Visual word cues informed subjects what the task-relevant feature of an upcoming visual stimulus (S2) was, while high-density electroencephalographic recordings were acquired. We examined anticipatory oscillatory activity in the Cue-to-S2 interval ( approximately 2 s). Subjects were cued on a trial-by-trial basis to attend to either the color or direction of motion of an upcoming dot field array, and to respond when they detected that a subset of the dots differed from the majority along the target feature dimension. We used the features of color and motion, expressly because they have well known, spatially separated cortical processing areas, to distinguish shifts in alpha power over areas processing each feature. Alpha power from dorsal regions increased when motion was the irrelevant feature (i.e., color was cued), and alpha power from ventral regions increased when color was irrelevant. Thus, alpha-suppression mechanisms appear to operate during feature-based selection in much the same manner as has been shown for space-based attention.

  17. A fine-scale chimpanzee genetic map from population sequencing.

    PubMed

    Auton, Adam; Fledel-Alon, Adi; Pfeifer, Susanne; Venn, Oliver; Ségurel, Laure; Street, Teresa; Leffler, Ellen M; Bowden, Rory; Aneas, Ivy; Broxholme, John; Humburg, Peter; Iqbal, Zamin; Lunter, Gerton; Maller, Julian; Hernandez, Ryan D; Melton, Cord; Venkat, Aarti; Nobrega, Marcelo A; Bontrop, Ronald; Myers, Simon; Donnelly, Peter; Przeworski, Molly; McVean, Gil

    2012-04-13

    To study the evolution of recombination rates in apes, we developed methodology to construct a fine-scale genetic map from high-throughput sequence data from 10 Western chimpanzees, Pan troglodytes verus. Compared to the human genetic map, broad-scale recombination rates tend to be conserved, but with exceptions, particularly in regions of chromosomal rearrangements and around the site of ancestral fusion in human chromosome 2. At fine scales, chimpanzee recombination is dominated by hotspots, which show no overlap with those of humans even though rates are similarly elevated around CpG islands and decreased within genes. The hotspot-specifying protein PRDM9 shows extensive variation among Western chimpanzees, and there is little evidence that any sequence motifs are enriched in hotspots. The contrasting locations of hotspots provide a natural experiment, which demonstrates the impact of recombination on base composition.

  18. Oscillatory alpha-band mechanisms and the deployment of spatial attention to anticipated auditory and visual target locations: Supramodal or sensory-specific control mechanisms?

    PubMed Central

    Banerjee, Snigdha; Snyder, Adam C.; Molholm, Sophie; Foxe, John J.

    2011-01-01

    Oscillatory alpha-band activity (8–15 Hz) over parieto-occipital cortex in humans plays an important role in suppression of processing for inputs at to-be-ignored regions of space, with increased alpha-band power observed over cortex contralateral to locations expected to contain distractors. It is unclear if similar processes operate during deployment of spatial attention in other sensory modalities. Evidence from lesion patients suggests that parietal regions house supramodal representations of space. The parietal lobes are prominent generators of alpha-oscillations; raising the possibility that alpha is a neural signature of supramodal spatial attention. Further, when spatial attention is deployed within vision, processing of task-irrelevant auditory inputs at attended locations is also enhanced, pointing to automatic links between spatial deployments across senses. Here, we asked whether lateralized alpha-band activity is also evident in a purely auditory spatial-cueing task, and whether it had the same underlying generator configuration as in a purely visuo-spatial task. If common to both sensory-systems, this would provide strong support for “supramodal” attention theory. Alternately, alpha-band differences between auditory and visual tasks would support a sensory-specific account. Lateralized shifts in alpha-band activity were indeed observed during a purely auditory-spatial task. Crucially, there were clear differences in scalp topographies of this alpha-activity depending on the sensory system within which spatial attention was deployed. Findings suggest that parietally-generated alpha-band mechanisms are central to attentional deployments across modalities but that they are invoked in a sensory-specific manner. The data support an interactivity account, whereby a supramodal system interacts with sensory-specific control systems during deployment of spatial attention. PMID:21734284

  19. Fine-scale human genetic structure in Western France

    PubMed Central

    Karakachoff, Matilde; Duforet-Frebourg, Nicolas; Simonet, Floriane; Le Scouarnec, Solena; Pellen, Nadine; Lecointe, Simon; Charpentier, Eric; Gros, Françoise; Cauchi, Stéphane; Froguel, Philippe; Copin, Nane; Balkau, B; Ducimetière, P; Eschwège;, E; Alhenc-Gelas, F; Girault, A; Fumeron, F; Marre, M; Roussel, R; Bonnet, F; Cauchi, S; Froguel, P; Cogneau, J; Born, C; Caces, E; Cailleau, M; Lantieri, O; Moreau, J G; Rakotozafy, F; Tichet, J; Le Tourneau, Thierry; Probst, Vincent; Le Marec, Hervé; Molinaro, Sabrina; Balkau, Beverley; Redon, Richard; Schott, Jean-Jacques; Blum, Michael GB; Dina, Christian

    2015-01-01

    The difficulties arising from association analysis with rare variants underline the importance of suitable reference population cohorts, which integrate detailed spatial information. We analyzed a sample of 1684 individuals from Western France, who were genotyped at genome-wide level, from two cohorts D.E.S.I.R and CavsGen. We found that fine-scale population structure occurs at the scale of Western France, with distinct admixture proportions for individuals originating from the Brittany Region and the Vendée Department. Genetic differentiation increases with distance at a high rate in these two parts of Northwestern France and linkage disequilibrium is higher in Brittany suggesting a lower effective population size. When looking for genomic regions informative about Breton origin, we found two prominent associated regions that include the lactase region and the HLA complex. For both the lactase and the HLA regions, there is a low differentiation between Bretons and Irish, and this is also found at the genome-wide level. At a more refined scale, and within the Pays de la Loire Region, we also found evidence of fine-scale population structure, although principal component analysis showed that individuals from different departments cannot be confidently discriminated. Because of the evidence for fine-scale genetic structure in Western France, we anticipate that rare and geographically localized variants will be identified in future full-sequence analyses. PMID:25182131

  20. Fine-scale human genetic structure in Western France.

    PubMed

    Karakachoff, Matilde; Duforet-Frebourg, Nicolas; Simonet, Floriane; Le Scouarnec, Solena; Pellen, Nadine; Lecointe, Simon; Charpentier, Eric; Gros, Françoise; Cauchi, Stéphane; Froguel, Philippe; Copin, Nane; Le Tourneau, Thierry; Probst, Vincent; Le Marec, Hervé; Molinaro, Sabrina; Balkau, Beverley; Redon, Richard; Schott, Jean-Jacques; Blum, Michael Gb; Dina, Christian

    2015-06-01

    The difficulties arising from association analysis with rare variants underline the importance of suitable reference population cohorts, which integrate detailed spatial information. We analyzed a sample of 1684 individuals from Western France, who were genotyped at genome-wide level, from two cohorts D.E.S.I.R and CavsGen. We found that fine-scale population structure occurs at the scale of Western France, with distinct admixture proportions for individuals originating from the Brittany Region and the Vendée Department. Genetic differentiation increases with distance at a high rate in these two parts of Northwestern France and linkage disequilibrium is higher in Brittany suggesting a lower effective population size. When looking for genomic regions informative about Breton origin, we found two prominent associated regions that include the lactase region and the HLA complex. For both the lactase and the HLA regions, there is a low differentiation between Bretons and Irish, and this is also found at the genome-wide level. At a more refined scale, and within the Pays de la Loire Region, we also found evidence of fine-scale population structure, although principal component analysis showed that individuals from different departments cannot be confidently discriminated. Because of the evidence for fine-scale genetic structure in Western France, we anticipate that rare and geographically localized variants will be identified in future full-sequence analyses.

  1. Oscillatory bands, neuronal synchrony and hippocampal function: implications of the effects of prenatal choline supplementation for sleep-dependent memory consolidation.

    PubMed

    Cheng, Ruey-Kuang; Williams, Christina L; Meck, Warren H

    2008-10-27

    Choline supplementation of the maternal diet has long-term facilitative effects on spatial and temporal memory processes in the offspring. To further delineate the impact of early nutritional status on brain and behavior, we examined effects of prenatal-choline availability on hippocampal oscillatory frequency bands in 12 month-old male and female rats. Adult offspring of time-pregnant dams that were given a deficient level of choline (DEF=0.0 g/kg), sufficient choline (CON=1.1 g/kg) or supplemental choline (SUP=3.5 g/kg) in their chow during embryonic days (ED) 12-17 were implanted with an electroencephalograph (EEG) electrode in the hippocampal dentate gyrus in combination with an electromyograph (EMG) electrode patch implanted in the nuchal muscle. Five consecutive 8-h recording sessions revealed differential patterns of EEG activity as a function of awake, slow-wave sleep (SWS) and rapid-eye movement (REM) sleep states and prenatal choline status. The main finding was that SUP rats displayed increased power levels of gamma (30-100 Hz) band oscillations during all phases of the sleep/wake cycle. These findings are discussed within the context of a general review of neuronal oscillations (e.g., delta, theta, and gamma bands) and synchronization across multiple brain regions in relation to sleep-dependent memory consolidation in the hippocampus.

  2. Fine-Scale Movements of the Broadnose Sevengill Shark and Its Main Prey, the Gummy Shark

    PubMed Central

    Barnett, Adam; Abrantes, Kátya G.; Stevens, John D.; Bruce, Barry D.; Semmens, Jayson M.

    2010-01-01

    Information on the fine-scale movement of predators and their prey is important to interpret foraging behaviours and activity patterns. An understanding of these behaviours will help determine predator-prey relationships and their effects on community dynamics. For instance understanding a predator's movement behaviour may alter pre determined expectations of prey behaviour, as almost any aspect of the prey's decisions from foraging to mating can be influenced by the risk of predation. Acoustic telemetry was used to study the fine-scale movement patterns of the Broadnose Sevengill shark Notorynchus cepedianus and its main prey, the Gummy shark Mustelus antarcticus, in a coastal bay of southeast Tasmania. Notorynchus cepedianus displayed distinct diel differences in activity patterns. During the day they stayed close to the substrate (sea floor) and were frequently inactive. At night, however, their swimming behaviour continually oscillated through the water column from the substrate to near surface. In contrast, M. antarcticus remained close to the substrate for the entire diel cycle, and showed similar movement patterns for day and night. For both species, the possibility that movement is related to foraging behaviour is discussed. For M. antarcticus, movement may possibly be linked to a diet of predominantly slow benthic prey. On several occasions, N. cepedianus carried out a sequence of burst speed events (increased rates of movement) that could be related to chasing prey. All burst speed events during the day were across the substrate, while at night these occurred in the water column. Overall, diel differences in water column use, along with the presence of oscillatory behaviour and burst speed events suggest that N. cepedianus are nocturnal foragers, but may opportunistically attack prey they happen to encounter during the day. PMID:21151925

  3. A FRAMEWORK FOR FINE-SCALE COMPUTATIONAL FLUID DYNAMICS AIR QUALITY MODELING AND ANALYSIS

    EPA Science Inventory

    Fine-scale Computational Fluid Dynamics (CFD) simulation of pollutant concentrations within roadway and building microenvironments is feasible using high performance computing. Unlike currently used regulatory air quality models, fine-scale CFD simulations are able to account rig...

  4. Solar chromospheric fine scale structures: dynamics and energetics

    NASA Astrophysics Data System (ADS)

    Tziotziou, K.

    2012-01-01

    The solar chromosphere is a very inhomogeneous and dynamic layer of the solar atmosphere that exhibits several phenomena on a wide range of spatial and temporal scales. High-resolution and long-duration observations, employing mostly lines, such as Halpha, the Ca II infrared lines and the Ca II H and K lines, obtained both from ground-based telescope facilities (e.g. DST, VTT, THEMIS, SST, DOT), as well as state-of-the-art satellites (e.g. SOHO, TRACE, HINODE) reveal an incredibly rich, dynamic and highly structured chromospheric environment. What is known in literature as the chromospheric fine-scale structure mainly consists of small fibrilar-like features that connect various parts of quiet/active regions or span across the chromospheric network cell interiors, showing a large diversity of both physical and dynamic characteristics. The highly dynamic, fine-scale chromospheric structures are mostly governed by flows which reflect the complex geometry and dynamics of the local magnetic field and play an important role in the propagation and dissipation of waves. A comprehensive study of these structures requires deep understanding of the physical processes involved and investigation of their intricate link with structures/processes at lower photospheric levels. Furthermore, due to their large number present on the solar surface, it is essential to investigate their impact on the mass and energy transport to higher atmospheric layers through processes such as magnetic reconnection and propagation of waves. The in-depth study of all aforementioned characteristics and processes, with the further addition of non-LTE physics, as well as the use of three-dimensional numerical simulations poses a fascinating challenge for both theory and numerical modeling of chromospheric fine-scale structures.

  5. Fine-Scale Filamentary Structure in Coronal Streamers

    NASA Technical Reports Server (NTRS)

    Woo, Richard; Armstrong, John W.; Bird, Michael K.; Paetzold, Martin

    1995-01-01

    Doppler scintillation measurements of a coronal streamer lasting several solar rotations have been conducted by Ulysses in 1991 over a heliocentric distance range of 14-77 R(sub 0). By showing that the solar corona is filamentary, and that Doppler frequency is the radio counterpart of white-light eclipse pictures processed to enhance spatial gradients, it is demonstrated that Doppler scintillation measurements provide the high spatial resolution that has long eluded white-light coronagraph measurements. The region of enhanced scintillation, spanning an angular extent of 1.8 deg in heliographic longitude, coincides with the radially expanding streamer stalk and represents filamentary structure with scale sizes at least as small as 340 km (0.5 sec) when extrapolated to the Sun. Within the stalk of the streamer, the fine-scale structure corresponding to scale sizes in the range of 20-340 km at the Sun and associated with closed magnetic fields amounts to a few percent of the mean density, while outside the stalk, the fine-scale structure associated with open fields is an order of magnitude lower. Clustering of filamentary structure that takes place within the stalk of the streamer is suggestive of multiple current sheets. Comparison with ISEE 3 in situ plasma measurements shows that significant evolution resulting from dynamic interaction with increasing heliocentric distance takes place by the time streamers reach Earth orbit.

  6. Fine-scale transient arcs seen in a shock aurora

    NASA Astrophysics Data System (ADS)

    Motoba, T.; Ebihara, Y.; Kadokura, A.; Weatherwax, A. T.

    2014-08-01

    We report, for the first time, fine-scale transient arcs that emerged successively within the initial 1-2 min evolutionary interval of a postnoon shock aurora on 14 July 2012. Data were acquired from ~2 Hz temporal resolution imaging of dayside aurora with a white light all-sky camera (ASC) at South Pole Station (magnetic latitude = -74.3°, magnetic local time = UT -3.5 h). Just after 1809:50 UT at which the initial response to an interplanetary (IP) shock was detected in the postnoon geosynchronous magnetic field, the ASC observed three successive transient arcs of which the locations shifted equatorward with an abrupt jump by ~0.2° in latitude. All of the transient arcs occurred in a closed field line region, ~1.0°-1.5° equatorward of the polar cap or open/closed field line boundary inferred from the intensity ratio of I630.0/I557.7 but just poleward of the shock-induced proton and diffuse-type electron aurorae. Each of the transient arcs had a latitudinal width of ~0.1° and a short lifetime of ~20-30 s. Although the obvious mechanism has still remained unclear, possible interpretations of the fine-scale transient arc features are discussed in terms of a local process of each of the magnetospheric origin (mode conversion) and ionospheric origin (feedback interaction) that may be induced by IP shock.

  7. Fine-scale adaptation in a clonal sea anemone.

    PubMed

    Sherman, Craig D H; Ayre, David J

    2008-06-01

    Local adaptation in response to fine-scale spatial heterogeneity is well documented in terrestrial ecosystems. In contrast, in marine environments local adaptation has rarely been documented or rigorously explored. This may reflect real or anticipated effects of genetic homogenization, resulting from widespread dispersal in the sea. However, evolutionary theory predicts that for the many benthic species with complex life histories that include both sexual and asexual phases, each parental habitat patch should become dominated by the fittest and most competitive clones. In this study we used genotypic mapping to show that within headlands, clones of the sea anemone Actinia tenebrosa show restricted distributions to specific habitats despite the potential for more widespread dispersal. On these same shores we used reciprocal transplant experiments that revealed strikingly better performance of clones within their natal rather than foreign habitats as judged by survivorship, asexual fecundity, and growth. These findings highlight the importance of selection for fine-scale environmental adaptation in marine taxa and imply that the genotypic structure of populations reflects extensive periods of interclonal competition and site-specific selection.

  8. The TRMM Multi-satellite Precipitation Analysis (TMPA): Quasi-Global Precipitation Estimates at Fine Scales

    NASA Technical Reports Server (NTRS)

    Huffman, George J.; Adler, Robert F.; Bolvin, David T.; Gu, Guojun; Nelkin, Eric J.; Bowman, Kenneth P.; Stocker, Erich; Wolff, David B.

    2006-01-01

    The TRMM Multi-satellite Precipitation Analysis (TMPA) provides a calibration-based sequential scheme for combining multiple precipitation estimates from satellites, as well as gauge analyses where feasible, at fine scales (0.25 degrees x 0.25 degrees and 3-hourly). It is available both after and in real time, based on calibration by the TRMM Combined Instrument and TRMM Microwave Imager precipitation products, respectively. Only the after-real-time product incorporates gauge data at the present. The data set covers the latitude band 50 degrees N-S for the period 1998 to the delayed present. Early validation results are as follows: The TMPA provides reasonable performance at monthly scales, although it is shown to have precipitation rate dependent low bias due to lack of sensitivity to low precipitation rates in one of the input products (based on AMSU-B). At finer scales the TMPA is successful at approximately reproducing the surface-observation-based histogram of precipitation, as well as reasonably detecting large daily events. The TMPA, however, has lower skill in correctly specifying moderate and light event amounts on short time intervals, in common with other fine-scale estimators. Examples are provided of a flood event and diurnal cycle determination.

  9. Object segmentation and reconstruction via an oscillatory neural network: interaction among learning, memory, topological organization and gamma-band synchronization.

    PubMed

    Magosso, E; Cuppini, C; Ursino, M

    2006-01-01

    Synchronization of neuronal activity in the gamma-band has been shown to play an important role in higher cognitive functions, by grouping together the necessary information in different cortical areas to achieve a coherent perception. In the present work, we used a neural network of Wilson-Cowan oscillators to analyze the problem of binding and segmentation of high-level objects. Binding is achieved by implementing in the network the similarity and prior knowledge Gestalt rules. Similarity law is realized via topological maps within the network. Prior knowledge originates by means of a Hebbian rule of synaptic change; objects are memorized in the network with different strengths. Segmentation is realized via a global inhibitor which allows desynchronisation among multiple objects avoiding interference. Simulation results performed with a 40x40 neural grid, using three simultaneous input objects, show that the network is able to recognize and segment objects in several different conditions (different degrees of incompleteness or distortion of input patterns), exhibiting the higher reconstruction performances the higher the strength of object memory. The presented model represents an integrated approach for investigating the relationships among learning, memory, topological organization and gamma-band synchronization.

  10. Parallel integer sorting with medium and fine-scale parallelism

    NASA Technical Reports Server (NTRS)

    Dagum, Leonardo

    1993-01-01

    Two new parallel integer sorting algorithms, queue-sort and barrel-sort, are presented and analyzed in detail. These algorithms do not have optimal parallel complexity, yet they show very good performance in practice. Queue-sort designed for fine-scale parallel architectures which allow the queueing of multiple messages to the same destination. Barrel-sort is designed for medium-scale parallel architectures with a high message passing overhead. The performance results from the implementation of queue-sort on a Connection Machine CM-2 and barrel-sort on a 128 processor iPSC/860 are given. The two implementations are found to be comparable in performance but not as good as a fully vectorized bucket sort on the Cray YMP.

  11. The fine scale structures of airflow over Bergen

    NASA Astrophysics Data System (ADS)

    Ólafsson, Haraldur; Rugaard Furevik, Birgitte; Asle Olseth, Jan; Edvard Grov, Ole

    2015-04-01

    A large network of automatic weather stations is operated in the the complex terrain of Bergen City and its surroundings. This so-called Bergen School of Meteorology network is used to explore the fine scale structures of the atmosphere in a föhn case and evaluate how numerical simulations perform in reproducing the details of the flow. In general, the vertical profile is well reproduced, as well as many details in the wind field, as long as the resolution permits adequate representation of the topography. The intermittent nature of the flow remains however a problem. A step towards better local forecasts may lie in predicting not only the fundamental parameters such as wind and temperature, but their local temporal variability as well.

  12. Fine-Scale Radio Studies of the Sun.

    DTIC Science & Technology

    1980-07-01

    7𔄁AD-A090 021 TUFTS UNIV MEDFORD .ASS MEPT O1F PHYSICS F/G 3/2 FINESCALE RADIO STUDIES OF THE SUN . (U) JUL 80 K R LANG, R F WILLSON FIg928-79-C-0010...UNCLASSIFIED AFGL-TR-80-O 190 NL ’!J!IEILEEIIE| llllllEEEEEnlnE ElllllllEEllEE AFGL-TR-80-0190 FINE-SCALE RADIO STUDIES OF THE SUN Kenneth R. Lang... the Sun # KY 15 Dec. 1978 - 15 June 1980. 6 PERFORMING O"G. RaPOIT %UMSE’R 7 AUTHOR~s) S. CONTRACT OR GRANT NUMIBER .i Kenneth R. Lang kRobert F

  13. Fine-scale genetic structuring on Manacus manacus leks.

    PubMed

    Shorey, L; Piertney, S; Stone, J; Höglund, J

    2000-11-16

    Leks have traditionally been considered as arenas where males compete to attract females and secure matings. Thus, direct fitness benefits mediated through competition between males to fertilize females have been considered to be the primary force driving the evolution of lekking behaviour. Inclusive fitness benefits mediated through kin selection may also be involved in lek formation and evolution, but to date this theory has been largely ignored. According to kin-selection theory, both reproducing and non-reproducing males may gain indirect inclusive fitness benefits. If females are attracted to larger leks, non-reproducing males add attractiveness to a lek, and therefore, in a genetically structured population, boost the reproductive success of kin. Theory predicts that the attractiveness of leks is plastic, and that males establish themselves on a lek in which the top male, in terms of reproductive success, is a close relative. Here we show that in white-bearded manakins (Manacus manacus), for which larger leks are more attractive to females and so secure the maximum number of matings, there is extraordinary fine-scale genetic structure, with leks being composed of clusters of related kin. We propose that males establish themselves where they find relatives to such an extent that they form groups within leks, and that such behaviour is consistent with kin-selection theory to maximize reproductive success of the group.

  14. The fine scale genetic structure of the British population

    PubMed Central

    Davison, Dan; Boumertit, Abdelhamid; Day, Tammy; Hutnik, Katarzyna; Royrvik, Ellen C; Cunliffe, Barry; Lawson, Daniel J; Falush, Daniel; Freeman, Colin; Pirinen, Matti; Myers, Simon; Robinson, Mark; Donnelly, Peter; Bodmer, Walter

    2015-01-01

    Summary Fine-scale genetic variation between human populations is interesting as a signature of historical demographic events and because of its potential for confounding disease studies. We use haplotype-based statistical methods to analyse genome-wide SNP data from a carefully chosen geographically diverse sample of 2,039 individuals from the United Kingdom (UK). This reveals a rich and detailed pattern of genetic differentiation with remarkable concordance between genetic clusters and geography. The regional genetic differentiation and differing patterns of shared ancestry with 6,209 individuals from across Europe carry clear signals of historical demographic events. We estimate the genetic contribution to SE England from Anglo-Saxon migrations to be under half, identify the regions not carrying genetic material from these migrations, suggest significant pre-Roman but post-Mesolithic movement into SE England from the Continent, and show that in non-Saxon parts of the UK there exist genetically differentiated subgroups rather than a general “Celtic” population. PMID:25788095

  15. A Parametric Study of Fine-scale Turbulence Mixing Noise

    NASA Technical Reports Server (NTRS)

    Khavaran, Abbas; Bridges, James; Freund, Jonathan B.

    2002-01-01

    The present paper is a study of aerodynamic noise spectra from model functions that describe the source. The study is motivated by the need to improve the spectral shape of the MGBK jet noise prediction methodology at high frequency. The predicted spectral shape usually appears less broadband than measurements and faster decaying at high frequency. Theoretical representation of the source is based on Lilley's equation. Numerical simulations of high-speed subsonic jets as well as some recent turbulence measurements reveal a number of interesting statistical properties of turbulence correlation functions that may have a bearing on radiated noise. These studies indicate that an exponential spatial function may be a more appropriate representation of a two-point correlation compared to its Gaussian counterpart. The effect of source non-compactness on spectral shape is discussed. It is shown that source non-compactness could well be the differentiating factor between the Gaussian and exponential model functions. In particular, the fall-off of the noise spectra at high frequency is studied and it is shown that a non-compact source with an exponential model function results in a broader spectrum and better agreement with data. An alternate source model that represents the source as a covariance of the convective derivative of fine-scale turbulence kinetic energy is also examined.

  16. Search for fine scale structures in high latitude solar wind

    NASA Technical Reports Server (NTRS)

    Livi, S.; Parenti, S.; Poletto, G.

    1995-01-01

    About 25 years ago, E. Parker suggested that, as a consequence of the inhomogeneous structure of the corona, the solar wind might consist of adjacent structures with different physical conditions. Since that suggestion was made, the solar wind plasma characteristics have been measured in situ through many experiments, but little has been done to check whether the solar wind shows any evidence for fine scale structures, and, in the affirmative, how far from the Sun these structures persist. A previous work on this subject, by Thieme, Marsch and Schwenn (1990), based on Helios data, lead these authors to claim that the solar wind, between 0.3 and 1 AU, is inhomogeneous on a scale consistent with the hypothesis that the plume-interplume plasmas, at those distances, still retain their identity. In this work we present preliminary results from an investigation of the solar wind fine structure from Ulysses high latitude observations. To this end, we have analyzed data over several months, during 1994, at times well after Ulysses's last encounter with the Heliospheric Current Sheet, when the spacecraft was at latitudes above 50 degrees. These data refer to high speed wind coming from southern polar coronal holes and are best suited for plume-interplume identification. We have performed a power spectra analysis of typical plasma parameters, to test whether the wind plasma consist of two distinct plasma populations. We also examined data to check whether there is any evidence for an horizontal pressure balance over the hypothesized distinct structures. Our results are discussed and compared with previous findings.

  17. Modelling Fine Scale Movement Corridors for the Tricarinate Hill Turtle

    NASA Astrophysics Data System (ADS)

    Mondal, I.; Kumar, R. S.; Habib, B.; Talukdar, G.

    2016-06-01

    Habitat loss and the destruction of habitat connectivity can lead to species extinction by isolation of population. Identifying important habitat corridors to enhance habitat connectivity is imperative for species conservation by preserving dispersal pattern to maintain genetic diversity. Circuit theory is a novel tool to model habitat connectivity as it considers habitat as an electronic circuit board and species movement as a certain amount of current moving around through different resistors in the circuit. Most studies involving circuit theory have been carried out at small scales on large ranging animals like wolves or pumas, and more recently on tigers. This calls for a study that tests circuit theory at a large scale to model micro-scale habitat connectivity. The present study on a small South-Asian geoemydid, the Tricarinate Hill-turtle (Melanochelys tricarinata), focuses on habitat connectivity at a very fine scale. The Tricarinate has a small body size (carapace length: 127-175 mm) and home range (8000-15000 m2), with very specific habitat requirements and movement patterns. We used very high resolution Worldview satellite data and extensive field observations to derive a model of landscape permeability at 1 : 2,000 scale to suit the target species. Circuit theory was applied to model potential corridors between core habitat patches for the Tricarinate Hill-turtle. The modelled corridors were validated by extensive ground tracking data collected using thread spool technique and found to be functional. Therefore, circuit theory is a promising tool for accurately identifying corridors, to aid in habitat studies of small species.

  18. On the Lundgren-Townsend model of turbulent fine scales

    NASA Astrophysics Data System (ADS)

    Pullin, D. I.; Saffman, P. G.

    1993-01-01

    The strained-spiral vortex model of turbulent fines scales given by Lundgren [Phys. Fluids 25, 2193 (1982)] is used to calculate vorticity and velocity-derivative moments for homogeneous isotropic turbulence. A specific form of the relaxing spiral vortex is proposed modeled by a rolling-up vortex layer embedded in a background containing opposite signed vorticity and with zero total circulation at infinity. The numerical values of two dimensionless groups are fixed in order to give a Kolmogorov constant and skewness which are within the range of experiment. This gives the result that the ratio of the ensemble average hyperskewness S2p+1≡ (∂u/∂x)2p+1/[(∂u/∂x)2](2p+1)/2 to the hyperflatness F2p≡(∂u/∂x)2p/[(∂u/∂x)2] p, p=2,3,..., is constant independent of Taylor-Reynolds number Rλ, as is the ratio of the 2pth moment of one component of the vorticity Ω2p≡ω2px/(ω2x)p to F2p. A cutoff in a relevant time integration is then used to eliminate vortex-sheet-induced divergences in the integrals corresponding to ω2px, p=2,3,..., and an assumption is made that the lateral scale of the spiral vortex in the model is the geometric mean of the Taylor and the Kolmogorov microscales. This gives Ω2p=Ω̂2pRλp/2-3/4, F2p=F̂2pRλp/2-3/4 and S2p+1=Ŝ2p+1Rλp/2-3/4, p=2,3,..., with explicit calculation of the numbers Ω̂2p, F̂2p, and Ŝ2p+1. The results of the model are compared with experimental compilation of Van Atta and Antonia [Phys. Fluids 23, 252 (1980)] for F4 and with the isotropic turbulence calculations of Kerr [J. Fluid Mech. 153, 31 (1985)] and of Vincent and Meneguzzi [J. Fluid Mech. 225, 1 (1991)].

  19. Jupiter's Great Red Spot: Fine-scale matches of model vorticity patterns to prevailing cloud patterns

    NASA Astrophysics Data System (ADS)

    Morales-Juberías, Raúl; Dowling, Timothy E.

    2013-07-01

    We report on a set of six new matches between fine-scale features in the vorticity field of a three-dimensional (3D), primitive-equation, finite-difference model of Jupiter's Great Red Spot that includes no clouds or cloud physics, and quasi-permanent structures in reflected visible-band images of the clouds. These add to similar success by Cho et al. (Cho, J., de la Torre Juárez, M., Ingersoll, A.P., Dritschel, D.G. [2001]. J. Geophys. Res. 106, 5099-5106), who earlier captured four characteristic features of the GRS, also reproduced here, using a 3D quasi-geostrophic, cloud-free contour-dynamics model. In that study and this, the key enabling model attribute is sufficient horizontal resolution, rather than the moist-convective and cloud-microphysics processes often required to match the patterns of clouds in terrestrial hurricanes. The only significant feature that these dry models do not capture is the episodic moist-convective plumes seen in the northwest quadrant adjacent to the GRS. We initialize with Jupiter's averaged zonal winds plus an approximately balanced, smooth 3D ellipsoidal anticyclone. The threshold horizontal grid-resolution to obtain the fine-scale matches is approximately Δy/Ld ≲ 0.15, where Δy ≲ 300 km is the meridional grid spacing and Ld ˜ 2000 km the Rossby deformation length. For models with this or finer horizontal resolution, the best correspondence with observations is reached after about six vortex turnaround times from initialization (˜30 Earth days), but good facsimiles of nearly all the studied features appear after only 1.5 turnaround times (˜7-8 days). We conclude that in images of Jupiter, it is not accurate to associate clouds with upward motion, since these dry models reproduce the observed cloud patterns without this association, and indeed the synoptic-scale vertical motions in the model, as well as those deduced from observations, do not at all correspond to the observed cloud patterns. Instead, Jupiter's cloud

  20. Fine-scale morphology of Tubeworm Slump, Monterey Canyon

    NASA Astrophysics Data System (ADS)

    Anderson, K.; Paull, C. K.; Caress, D. W.; Thomas, H.; Gwiazda, R.; Lundsten, E.

    2011-12-01

    Tubeworm Slump is a well-studied deep-sea slide scar on the northern rim of lower Monterey Canyon in approximately 2 km water depth. The interpretation of previous studies suggested that this feature was generated during a single massive slope failure event, which is consistent with the available surface ship multibeam data. High-resolution multibeam bathymetry (vertical precision of 0.15 m and horizontal resolution of 1.0 m) and 2-10 kHz Chirp seismic reflection profiles were recently collected using an autonomous underwater vehicle (AUV) revealing the fine scale morphology and shallow seafloor structure of this feature. The more detailed bathymetry provided by the AUV clearly shows that Tubeworm Slump is a composite of multiple slide events. The data were collected on two 17.5-hour-long dives in 1,850 to 2,650 m water depths and focused on surveying the approximately arcuate shaped scarp, which has a diameter of ~3.2 km and a maximum height of 300 m. An inertial navigation system combined with a Doppler velocity sonar allowed the AUV to fly pre-programmed grids at 3 knots while maintaining an altitude of 50 m above the bottom in this rough topography. The detailed bathymetry shows that the main scarp is actually composed of more than 20 smaller arcuate shaped scarps that are 100 to 400 m across. Crisp lineations, apparently outlining the edges of nearly horizontal beds that have been truncated by slope failures, are obvious within many of these smaller scarps. These lineations are more muted or absent in other places indicating variations in the thicknesses of the sediment drape and implying these small slope failure events are of multiple ages. Variations in the seafloor roughness also characterize distinct regions of the seafloor within the slide scar. On the eastern side of the main scar there is an especially distinctive lobe characterized by numerous blocks of rubble, tongues of debris, and side scarps that apparently cut across the adjacent sediment drape

  1. Fine-scale structure in the far-infrared Milky-Way

    NASA Technical Reports Server (NTRS)

    Waller, William H.; Wall, William F.; Reach, William T.; Varosi, Frank; Ebert, Rick; Laughlin, Gaylin; Boulanger, Francois

    1995-01-01

    This final report summarizes the work performed and which falls into five broad categories: (1) generation of a new data product (mosaics of the far-infrared emission in the Milky Way); (2) acquisition of associated data products at other wavelengths; (3) spatial filtering of the far-infrared mosaics and resulting images of the FIR fine-scale structure; (4) evaluation of the spatially filtered data; (5) characterization of the FIR fine-scale structure in terms of its spatial statistics; and (6) identification of interstellar counterparts to the FIR fine-scale structure.

  2. Fine-scale hydrodynamics influence the spatio-temporal distribution of harbour porpoises at a coastal hotspot

    NASA Astrophysics Data System (ADS)

    Jones, A. R.; Hosegood, P.; Wynn, R. B.; De Boer, M. N.; Butler-Cowdry, S.; Embling, C. B.

    2014-11-01

    The coastal Runnelstone Reef, off southwest Cornwall (UK), is characterised by complex topography and strong tidal flows and is a known high-density site for harbour porpoise (Phocoena phocoena); a European protected species. Using a multidisciplinary dataset including: porpoise sightings from a multi-year land-based survey, Acoustic Doppler Current Profiling (ADCP), vertical profiling of water properties and high-resolution bathymetry; we investigate how interactions between tidal flow and topography drive the fine-scale porpoise spatio-temporal distribution at the site. Porpoise sightings were distributed non-uniformly within the survey area with highest sighting density recorded in areas with steep slopes and moderate depths. Greater numbers of sightings were recorded during strong westward (ebbing) tidal flows compared to strong eastward (flooding) flows and slack water periods. ADCP and Conductivity Temperature Depth (CTD) data identified fine-scale hydrodynamic features, associated with cross-reef tidal flows in the sections of the survey area with the highest recorded densities of porpoises. We observed layered, vertically sheared flows that were susceptible to the generation of turbulence by shear instability. Additionally, the intense, oscillatory near surface currents led to hydraulically controlled flow that transitioned from subcritical to supercritical conditions; indicating that highly turbulent and energetic hydraulic jumps were generated along the eastern and western slopes of the reef. The depression and release of isopycnals in the lee of the reef during cross-reef flows revealed that the flow released lee waves during upslope currents at specific phases of the tidal cycle when the highest sighting rates were recorded. The results of this unique, fine-scale field study provide new insights into specific hydrodynamic features, produced through tidal forcing, that may be important for creating predictable foraging opportunities for porpoises at a

  3. Quantitative rainfall metrics for comparing volumetric rainfall retrievals to fine scale models

    NASA Astrophysics Data System (ADS)

    Collis, Scott; Tao, Wei-Kuo; Giangrande, Scott; Fridlind, Ann; Theisen, Adam; Jensen, Michael

    2013-04-01

    Precipitation processes play a significant role in the energy balance of convective systems for example, through latent heating and evaporative cooling. Heavy precipitation "cores" can also be a proxy for vigorous convection and vertical motions. However, comparisons between rainfall rate retrievals from volumetric remote sensors with forecast rain fields from high-resolution numerical weather prediction simulations are complicated by differences in the location and timing of storm morphological features. This presentation will outline a series of metrics for diagnosing the spatial variability and statistical properties of precipitation maps produced both from models and retrievals. We include existing metrics such as Contoured by Frequency Altitude Diagrams (Yuter and Houze 1995) and Statistical Coverage Products (May and Lane 2009) and propose new metrics based on morphology, cell and feature based statistics. Work presented focuses on observations from the ARM Southern Great Plains radar network consisting of three agile X-Band radar systems with a very dense coverage pattern and a C Band system providing site wide coverage. By combining multiple sensors resolutions of 250m2 can be achieved, allowing improved characterization of fine-scale features. Analyses compare data collected during the Midlattitude Continental Convective Clouds Experiment (MC3E) with simulations of observed systems using the NASA Unified Weather Research and Forecasting model. May, P. T., and T. P. Lane, 2009: A method for using weather radar data to test cloud resolving models. Meteorological Applications, 16, 425-425, doi:10.1002/met.150, 10.1002/met.150. Yuter, S. E., and R. A. Houze, 1995: Three-Dimensional Kinematic and Microphysical Evolution of Florida Cumulonimbus. Part II: Frequency Distributions of Vertical Velocity, Reflectivity, and Differential Reflectivity. Mon. Wea. Rev., 123, 1941-1963, doi:10.1175/1520-0493(1995)123<1941:TDKAME>2.0.CO;2.

  4. Fine-Scale Structure of Solar Polar Faculae and their relation to Magnetic Patches

    NASA Astrophysics Data System (ADS)

    Suematsu, Y.; Kaithakkal, A. J.

    2014-12-01

    The fine-scale structure and dynamics of solar polar faculae were studied using Hinode/SOT spectro-polarimetric and filtergraphic observations at polar regions. It is revealed that polar magnetic patches of large flux have substructures, with a few small faculae in the much larger patches. It was also found that faculae tend to have higher intrinsic magnetic field strengths compared with the non-facular regions inside the associated magnetic patches. G-band images reveal much thinner facular structures of close to 0.1 arcsec and the faculae appear as a cluster of thin tapered tube-like structures; individual size is about 0.2 x 0.5 arcsec, reaching the maximum closer mid-way to the limb, are likely projected on the limb-side neighboring granules with center-ward dark lanes. Typical lifetime of each facular elements is about five minutes, showing side-way motion during the life. Corresponding bright fine elongated structures are seen in Ca II H, although such structures are more numerous and therefore there does not always exist one-to-one correspondence of Ca II H bright structures with the G-band facular elements. In H-alpha and Na I D line wing, fibril structure emanating limb-ward from the faulae and Ca II H bright regions. Those facts imply that the polar faculae appear in the root of intense vertically-oriented thin magnetic flux tubes which are consistent with the result from the magnetic properties reduced from the spectro-polarimetry. Those results suggest that the Spruit's hot wall effect explains the appearance of faculae in intense vertically oriented flux tube whose formation is dynamically changing.

  5. Assessment of fine-scale parameterizations of turbulent dissipation rates near mixing hotspots in the deep ocean

    NASA Astrophysics Data System (ADS)

    Hibiya, Toshiyuki; Furuichi, Naoki; Robertson, Robin

    2012-12-01

    Shear-based and/or strain-based fine-scale parameterizations of turbulent dissipation rates in the deep ocean become erroneous near topographic features where internal wave spectra deviate from Garrett-Munk (GM). Although the Gregg-Henyey-Polzin (GHP) parameterization incorporates this spectral deviation, the applicability remains uncertain. We evaluate “α” and “β” representing the local internal wave energy in the high frequency (2f < ω < N) and low frequency (f < ω < 2f) bands, respectively, scaled by their corresponding values in GM using fine-scale vertical shear and strain simultaneously measured near mixing hotspots. The local internal wave spectra are biased toward higher frequencies (α/β ≫ 1) over rough bathymetry where high frequency internal waves are generated, whereas they are biased toward lower frequencies (α/β ≪ 1) at latitudes where high vertical wavenumber, near-inertial shears are created by parametric subharmonic instabilities. Compared with the shear-based and/or strain-based parameterizations, GHP more accurately estimates turbulent dissipation rates by compensating for deviations from GM.

  6. Fine-scale topography in sensory systems: insights from Drosophila and vertebrates.

    PubMed

    Kaneko, Takuya; Ye, Bing

    2015-09-01

    To encode the positions of sensory stimuli, sensory circuits form topographic maps in the central nervous system through specific point-to-point connections between pre- and postsynaptic neurons. In vertebrate visual systems, the establishment of topographic maps involves the formation of a coarse topography followed by that of fine-scale topography that distinguishes the axon terminals of neighboring neurons. It is known that intrinsic differences in the form of broad gradients of guidance molecules instruct coarse topography while neuronal activity is required for fine-scale topography. On the other hand, studies in the Drosophila visual system have shown that intrinsic differences in cell adhesion among the axon terminals of neighboring neurons instruct the fine-scale topography. Recent studies on activity-dependent topography in the Drosophila somatosensory system have revealed a role of neuronal activity in creating molecular differences among sensory neurons for establishing fine-scale topography, implicating a conserved principle. Here we review the findings in both Drosophila and vertebrates and propose an integrated model for fine-scale topography.

  7. Fine-scale topography in sensory systems: insights from Drosophila and vertebrates

    PubMed Central

    Kaneko, Takuya; Ye, Bing

    2015-01-01

    To encode the positions of sensory stimuli, sensory circuits form topographic maps in the central nervous system through specific point-to-point connections between pre- and post-synaptic neurons. In vertebrate visual systems, the establishment of topographic maps involves the formation of a coarse topography followed by that of fine-scale topography that distinguishes the axon terminals of neighboring neurons. It is known that intrinsic differences in the form of broad gradients of guidance molecules instruct coarse topography while neuronal activity is required for fine-scale topography. On the other hand, studies in the Drosophila visual system have shown that intrinsic differences in cell adhesion among the axon terminals of neighboring neurons instruct the fine-scale topography. Recent studies on activity-dependent topography in the Drosophila somatosensory system have revealed a role of neuronal activity in creating molecular differences among sensory neurons for establishing fine-scale topography, implicating a conserved principle. Here we review the findings in both Drosophila and vertebrates and propose an integrated model for fine-scale topography. PMID:26091779

  8. Computer-Assisted Experiments with Oscillatory Circuits

    ERIC Educational Resources Information Center

    Fernandes, J. C.; Ferraz, A.; Rogalski, M. S.

    2010-01-01

    A basic setup for data acquisition and analysis from an oscillatory circuit is described, with focus on its application as either low-pass, high-pass, band-pass or band-reject frequency filter. A homemade board containing the "RLC" elements allows for the interchange of some of them, in particular, for the easy change of the "R" value, and this…

  9. Downscaling future climate scenarios to fine scales for hydrologic and ecological modeling and analysis

    USGS Publications Warehouse

    Flint, Lorraine E.; Flint, Alan L.

    2012-01-01

    The methodology, which includes a sequence of rigorous analyses and calculations, is intended to reduce the addition of uncertainty to the climate data as a result of the downscaling while providing the fine-scale climate information necessary for ecological analyses. It results in new but consistent data sets for the US at 4 km, the southwest US at 270 m, and California at 90 m and illustrates the utility of fine-scale downscaling to analyses of ecological processes influenced by topographic complexity.

  10. Fine-Scale Population Estimation by 3D Reconstruction of Urban Residential Buildings

    PubMed Central

    Wang, Shixin; Tian, Ye; Zhou, Yi; Liu, Wenliang; Lin, Chenxi

    2016-01-01

    Fine-scale population estimation is essential in emergency response and epidemiological applications as well as urban planning and management. However, representing populations in heterogeneous urban regions with a finer resolution is a challenge. This study aims to obtain fine-scale population distribution based on 3D reconstruction of urban residential buildings with morphological operations using optical high-resolution (HR) images from the Chinese No. 3 Resources Satellite (ZY-3). Specifically, the research area was first divided into three categories when dasymetric mapping was taken into consideration. The results demonstrate that the morphological building index (MBI) yielded better results than built-up presence index (PanTex) in building detection, and the morphological shadow index (MSI) outperformed color invariant indices (CIIT) in shadow extraction and height retrieval. Building extraction and height retrieval were then combined to reconstruct 3D models and to estimate population. Final results show that this approach is effective in fine-scale population estimation, with a mean relative error of 16.46% and an overall Relative Total Absolute Error (RATE) of 0.158. This study gives significant insights into fine-scale population estimation in complicated urban landscapes, when detailed 3D information of buildings is unavailable. PMID:27775670

  11. A FRAMEWORK FOR FINE-SCALE COMPUTATIONAL FLUID DYNAMICS AIR QUALITY MODELING AND ANALYSIS

    EPA Science Inventory

    This paper discusses a framework for fine-scale CFD modeling that may be developed to complement the present Community Multi-scale Air Quality (CMAQ) modeling system which itself is a computational fluid dynamics model. A goal of this presentation is to stimulate discussions on w...

  12. 75 FR 60407 - Gulf of the Farallones National Marine Sanctuary Permit Application Project Titled: Fine Scale...

    Federal Register 2010, 2011, 2012, 2013, 2014

    2010-09-30

    ... From the Federal Register Online via the Government Publishing Office DEPARTMENT OF COMMERCE National Oceanic and Atmospheric Administration Gulf of the Farallones National Marine Sanctuary Permit Application Project Titled: Fine Scale, Long-Term Tracking of Adult White Sharks AGENCY: Office of...

  13. Fine-Scale Habitat Segregation between Two Ecologically Similar Top Predators

    PubMed Central

    Palomares, Francisco; Fernández, Néstor; Roques, Severine; Chávez, Cuauhtemoc; Silveira, Leandro; Keller, Claudia; Adrados, Begoña

    2016-01-01

    Similar, coexisting species often segregate along the spatial ecological axis. Here, we examine if two top predators (jaguars and pumas) present different fine-scale habitat use in areas of coexistence, and discuss if the observed pattern can be explained by the risk of interference competition between them. Interference competition theory predicts that pumas should avoid habitats or areas used by jaguars (the dominant species), and as a consequence should present more variability of niche parameters across study areas. We used non-invasive genetic sampling of faeces in 12 different areas and sensor satellite fine-scale habitat indices to answer these questions. Meta-analysis confirmed differences in fine-scale habitat use between jaguars and pumas. Furthermore, average marginality of the realized niches of pumas was more variable than those of jaguars, and tolerance (a measure of niche breadth) was on average 2.2 times higher in pumas than in jaguars, as expected under the interference competition risk hypothesis. The use of sensor satellite fine-scale habitat indices allowed the detection of subtle differences in the environmental characteristics of the habitats used by these two similar top predators, which, as a rule, until now were recorded using the same general habitat types. The detection of fine spatial segregation between these two top predators was scale-dependent. PMID:27187596

  14. Fine-scale population structure, inbreeding risk and avoidance in a wild insect population.

    PubMed

    Bretman, Amanda; Rodríguez-Muñoz, Rolando; Walling, Craig; Slate, Jon; Tregenza, Tom

    2011-07-01

    The ecological and evolutionary importance of fine-scale genetic structure within populations is increasingly appreciated. However, available data are largely restricted to wild vertebrates and eusocial insects. In addition, there is the expectation that most insects tend to have such large- and high-density populations and are so mobile that they are unlikely to face inbreeding risks through fine-scale population structuring. This has made the growing body of evidence for inbreeding avoidance in insects and its implication in mating systems evolution somewhat enigmatic. We present a 4-year study of a natural population of field crickets. Using detailed video monitoring combined with genotyping, we track the movement of all adults within the population and investigate genetic structure at a fine scale. We find some evidence for relatives being found in closer proximity, both across generations and within a single breeding season. Whilst incestuous matings are not avoided, population inbreeding is low, suggesting that mating is close to random and the limited fine-scale structure does not create significant inbreeding risk. Hence, there is little evidence for selective pressures associated with the evolution of inbreeding avoidance mechanisms in a closely related species.

  15. CFD MODELING OF FINE SCALE FLOW AND TRANSPORT IN THE HOUSTON METROPOLITAN AREA, TEXAS

    EPA Science Inventory

    Fine scale modeling of flows and air quality in Houston, Texas is being performed; the use of computational fluid dynamics (CFD) modeling is being applied to investigate the influence of morphologic structures on the within-grid transport and dispersion of sources in grid models ...

  16. IMPLEMENTATION OF AN URBAN CANOPY PARAMETERIZATION FOR FINE-SCALE SIMULATIONS

    EPA Science Inventory

    The Pennsylvania State University/National Center for Atmospheric Research Mesoscale Model (MM5) (Grell et al. 1994) has been modified to include an urban canopy parameterization (UCP) for fine-scale urban simulations ( 1 - km horizontal grid spacing ). The UCP accounts for dr...

  17. Methods for Improving Fine-Scale Applications of the WRF-CMAQ Modeling System

    EPA Science Inventory

    Presentation on the work in AMAD to improve fine-scale (e.g. 4km and 1km) WRF-CMAQ simulations. Includes iterative analysis, updated sea surface temperature and snow cover fields, and inclusion of impervious surface information (urban parameterization).

  18. On velocity gradient dynamics and fine-scale structure: experiments support DNS and models

    NASA Astrophysics Data System (ADS)

    Lawson, John; Dawson, James

    2015-11-01

    The fine scales of turbulence are embodied by statistics of velocity gradients. In solving exact equations for their evolution, the challenge is to specify how the pressure Hessian acts. This is determined by the footprints that ``structures'' of enstrophy and strain leave in conditional average pressure fields. We use direct and approximate conditional averaging methods to extract this structure from different turbulence datasets: a direct numerical simulation and a unique scanning tomography experiment in a ``French washing machine''. Direct comparisons between simulation and experiment show the structure and resulting dynamics are in excellent, quantitative agreement. This evidence supports existing modelling approaches and provides insights towards their refinement. Moreover, it demonstrates the dynamical significance and the reproducibility of fine-scale structure.

  19. Fine-Scale Focal DTAG Behavioral Study in the Gulf of Maine

    DTIC Science & Technology

    2011-09-30

    Several humpback whale stocks are showing stronger recovery than right whales , despite overlapping habitat usage on the feeding grounds in the...goal of this project is to obtain fine-scale behavior data from two endangered baleen whale species, the humpback whale (Megaptera novaengliae) and...tag data to: 1) determine the diel trends in dive profiles and horizontal movement patterns for tagged humpback and right whales on the Stellwagen

  20. Predictive Modelling to Identify Near-Shore, Fine-Scale Seabird Distributions during the Breeding Season.

    PubMed

    Warwick-Evans, Victoria C; Atkinson, Philip W; Robinson, Leonie A; Green, Jonathan A

    2016-01-01

    During the breeding season seabirds are constrained to coastal areas and are restricted in their movements, spending much of their time in near-shore waters either loafing or foraging. However, in using these areas they may be threatened by anthropogenic activities such as fishing, watersports and coastal developments including marine renewable energy installations. Although many studies describe large scale interactions between seabirds and the environment, the drivers behind near-shore, fine-scale distributions are not well understood. For example, Alderney is an important breeding ground for many species of seabird and has a diversity of human uses of the marine environment, thus providing an ideal location to investigate the near-shore fine-scale interactions between seabirds and the environment. We used vantage point observations of seabird distribution, collected during the 2013 breeding season in order to identify and quantify some of the environmental variables affecting the near-shore, fine-scale distribution of seabirds in Alderney's coastal waters. We validate the models with observation data collected in 2014 and show that water depth, distance to the intertidal zone, and distance to the nearest seabird nest are key predictors in the distribution of Alderney's seabirds. AUC values for each species suggest that these models perform well, although the model for shags performed better than those for auks and gulls. While further unexplained underlying localised variation in the environmental conditions will undoubtedly effect the fine-scale distribution of seabirds in near-shore waters we demonstrate the potential of this approach in marine planning and decision making.

  1. Predictive Modelling to Identify Near-Shore, Fine-Scale Seabird Distributions during the Breeding Season

    PubMed Central

    Warwick-Evans, Victoria C.; Atkinson, Philip W.; Robinson, Leonie A.; Green, Jonathan A.

    2016-01-01

    During the breeding season seabirds are constrained to coastal areas and are restricted in their movements, spending much of their time in near-shore waters either loafing or foraging. However, in using these areas they may be threatened by anthropogenic activities such as fishing, watersports and coastal developments including marine renewable energy installations. Although many studies describe large scale interactions between seabirds and the environment, the drivers behind near-shore, fine-scale distributions are not well understood. For example, Alderney is an important breeding ground for many species of seabird and has a diversity of human uses of the marine environment, thus providing an ideal location to investigate the near-shore fine-scale interactions between seabirds and the environment. We used vantage point observations of seabird distribution, collected during the 2013 breeding season in order to identify and quantify some of the environmental variables affecting the near-shore, fine-scale distribution of seabirds in Alderney’s coastal waters. We validate the models with observation data collected in 2014 and show that water depth, distance to the intertidal zone, and distance to the nearest seabird nest are key predictors in the distribution of Alderney’s seabirds. AUC values for each species suggest that these models perform well, although the model for shags performed better than those for auks and gulls. While further unexplained underlying localised variation in the environmental conditions will undoubtedly effect the fine-scale distribution of seabirds in near-shore waters we demonstrate the potential of this approach in marine planning and decision making. PMID:27031616

  2. FINE-SCALE STRUCTURES OF FLUX ROPES TRACKED BY ERUPTING MATERIAL

    SciTech Connect

    Li Ting; Zhang Jun E-mail: zjun@nao.cas.cn

    2013-06-20

    We present Solar Dynamics Observatory observations of two flux ropes tracked out by material from a surge and a failed filament eruption on 2012 July 29 and August 4, respectively. For the first event, the interaction between the erupting surge and a loop-shaped filament in the east seems to 'peel off' the filament and add bright mass into the flux rope body. The second event is associated with a C-class flare that occurs several minutes before the filament activation. The two flux ropes are, respectively, composed of 85 {+-} 12 and 102 {+-} 15 fine-scale structures, with an average width of about 1.''6. Our observations show that two extreme ends of the flux rope are rooted in opposite polarity fields and each end is composed of multiple footpoints (FPs) of fine-scale structures. The FPs of the fine-scale structures are located at network magnetic fields, with magnetic fluxes from 5.6 Multiplication-Sign 10{sup 18} Mx to 8.6 Multiplication-Sign 10{sup 19} Mx. Moreover, almost half of the FPs show converging motion of smaller magnetic structures over 10 hr before the appearance of the flux rope. By calculating the magnetic fields of the FPs, we deduce that the two flux ropes occupy at least 4.3 Multiplication-Sign 10{sup 20} Mx and 7.6 Multiplication-Sign 10{sup 20} Mx magnetic fluxes, respectively.

  3. Fine scale genetic structure in the wild ancestor of maize (Zea mays ssp. parviglumis).

    PubMed

    Van Heerwaarden, Joost; Ross-Ibarra, Jeffrey; Doebley, John; Glaubitz, Jeffrey C; González, Jose De Jesús Sánchez; Gaut, Brandon S; Eguiarte, Luis E

    2010-03-01

    Analysis of fine scale genetic structure in continuous populations of outcrossing plant species has traditionally been limited by the availability of sufficient markers. We used a set of 468 SNPs to characterize fine-scale genetic structure within and between two dense stands of the wild ancestor of maize, teosinte (Zea mays ssp. parviglumis). Our analyses confirmed that teosinte is highly outcrossing and showed little population structure over short distances. We found that the two populations were clearly genetically differentiated, although the actual level of differentiation was low. Spatial autocorrelation of relatedness was observed within both sites but was somewhat stronger in one of the populations. Using principal component analysis, we found evidence for significant local differentiation in the population with stronger spatial autocorrelation. This differentiation was associated with pronounced shifts in the first two principal components along the field. These shifts corresponded to changes in allele frequencies, potentially due to local topographical features. There was little evidence for selection at individual loci as a contributing factor to differentiation. Our results demonstrate that significant local differentiation may, but need not, co-occur with spatial autocorrelation of relatedness. The present study represents one of the most detailed analyses of local genetic structure to date and provides a benchmark for future studies dealing with fine scale patterns of genetic diversity in natural plant populations.

  4. Multipoint MMS observations of fine-scale SAPS structure in the inner magnetosphere

    NASA Astrophysics Data System (ADS)

    Erickson, P. J.; Matsui, H.; Foster, J. C.; Torbert, R. B.; Ergun, R. E.; Khotyaintsev, Yu. V.; Lindqvist, P.-A.; Argall, M. R.; Farrugia, C. J.; Paulson, K. W.; Strangeway, R. J.; Magnes, W.

    2016-07-01

    We present detailed observations of dynamic, fine-scale inner magnetosphere-ionosphere coupling at ˜3.9 RE in the Region 2 Birkeland field-aligned current (FAC). We find that observed electrodynamic spatial/temporal scales are primarily characteristic of magnetically mapped ionospheric structure. On 15 September 2015, conjugate Magnetospheric Multiscale (MMS) spacecraft and Millstone Hill radar observations show plasmasphere boundary region subauroral polarization stream (SAPS) electric fields at L = 4.0-4.2 near 21 MLT. MMS observations reveal high-altitude ˜1 mV/m fine-scale radial and azimuthal electric field perturbations over ≤0.15 L with high spatial coherence over ≥2-3 min and show outward motion within a broader FAC of ˜0.12 μA/m2. Our analysis shows that MMS electric field fluctuations are most likely reflective of SAPS ionospheric structure at scales of ˜22 km and with ionospheric closure of small-scale filamentary FAC perturbations. The results highlight the ionosphere's importance in regulating fine-scale magnetosphere-ionosphere structure.

  5. Parallelization of fine-scale computation in Agile Multiscale Modelling Methodology

    NASA Astrophysics Data System (ADS)

    Macioł, Piotr; Michalik, Kazimierz

    2016-10-01

    Nowadays, multiscale modelling of material behavior is an extensively developed area. An important obstacle against its wide application is high computational demands. Among others, the parallelization of multiscale computations is a promising solution. Heterogeneous multiscale models are good candidates for parallelization, since communication between sub-models is limited. In this paper, the possibility of parallelization of multiscale models based on Agile Multiscale Methodology framework is discussed. A sequential, FEM based macroscopic model has been combined with concurrently computed fine-scale models, employing a MatCalc thermodynamic simulator. The main issues, being investigated in this work are: (i) the speed-up of multiscale models with special focus on fine-scale computations and (ii) on decreasing the quality of computations enforced by parallel execution. Speed-up has been evaluated on the basis of Amdahl's law equations. The problem of `delay error', rising from the parallel execution of fine scale sub-models, controlled by the sequential macroscopic sub-model is discussed. Some technical aspects of combining third-party commercial modelling software with an in-house multiscale framework and a MPI library are also discussed.

  6. European Invasion of North American Pinus strobus at Large and Fine Scales: High Genetic Diversity and Fine-Scale Genetic Clustering over Time in the Adventive Range

    PubMed Central

    Mandák, Bohumil; Hadincová, Věroslava; Mahelka, Václav; Wildová, Radka

    2013-01-01

    Background North American Pinus strobus is a highly invasive tree species in Central Europe. Using ten polymorphic microsatellite loci we compared various aspects of the large-scale genetic diversity of individuals from 30 sites in the native distribution range with those from 30 sites in the European adventive distribution range. To investigate the ascertained pattern of genetic diversity of this intercontinental comparison further, we surveyed fine-scale genetic diversity patterns and changes over time within four highly invasive populations in the adventive range. Results Our data show that at the large scale the genetic diversity found within the relatively small adventive range in Central Europe, surprisingly, equals the diversity found within the sampled area in the native range, which is about thirty times larger. Bayesian assignment grouped individuals into two genetic clusters separating North American native populations from the European, non-native populations, without any strong genetic structure shown over either range. In the case of the fine scale, our comparison of genetic diversity parameters among the localities and age classes yielded no evidence of genetic diversity increase over time. We found that SGS differed across age classes within the populations under study. Old trees in general completely lacked any SGS, which increased over time and reached its maximum in the sapling stage. Conclusions Based on (1) the absence of difference in genetic diversity between the native and adventive ranges, together with the lack of structure in the native range, and (2) the lack of any evidence of any temporal increase in genetic diversity at four highly invasive populations in the adventive range, we conclude that population amalgamation probably first happened in the native range, prior to introduction. In such case, there would have been no need for multiple introductions from previously isolated populations, but only several introductions from

  7. Binary Oscillatory Crossflow Electrophoresis

    NASA Technical Reports Server (NTRS)

    Molloy, Richard F.; Gallagher, Christopher T.; Leighton, David T., Jr.

    1996-01-01

    We present preliminary results of our implementation of a novel electrophoresis separation technique: Binary Oscillatory Cross flow Electrophoresis (BOCE). The technique utilizes the interaction of two driving forces, an oscillatory electric field and an oscillatory shear flow, to create an active binary filter for the separation of charged species. Analytical and numerical studies have indicated that this technique is capable of separating proteins with electrophoretic mobilities differing by less than 10%. With an experimental device containing a separation chamber 20 cm long, 5 cm wide, and 1 mm thick, an order of magnitude increase in throughput over commercially available electrophoresis devices is theoretically possible.

  8. L-theanine and caffeine in combination affect human cognition as evidenced by oscillatory alpha-band activity and attention task performance.

    PubMed

    Kelly, Simon P; Gomez-Ramirez, Manuel; Montesi, Jennifer L; Foxe, John J

    2008-08-01

    Recent neuropharmacological research has suggested that certain constituents of tea may have modulatory effects on brain state. The bulk of this research has focused on either L-theanine or caffeine ingested alone (mostly the latter) and has been limited to behavioral testing, subjective rating, or neurophysiological assessments during resting. Here, we investigated the effects of both L-theanine and caffeine, ingested separately or together, on behavioral and electrophysiological indices of tonic (background) and phasic (event-related) visuospatial attentional deployment. Subjects underwent 4 d of testing, ingesting either placebo, 100 mg of L-theanine, 50 mg of caffeine, or these treatments combined. The task involved cued shifts of attention to the left or right visual hemifield in anticipation of an imperative stimulus requiring discrimination. In addition to behavioral measures, we examined overall, tonic attentional focus as well as phasic, cue-dependent anticipatory attentional biasing, as indexed by scalp-recorded alpha-band (8-14 Hz) activity. We found an increase in hit rate and target discriminability (d') for the combined treatment relative to placebo, and an increase in d' but not hit rate for caffeine alone, whereas no effects were detected for L-theanine alone. Electrophysiological results did not show increased differential biasing in phasic alpha across hemifields but showed lower overall tonic alpha power in the combined treatment, similar to previous findings at a larger dosage of L-theanine alone. This may signify a more generalized tonic deployment of attentional resources to the visual modality and may underlie the facilitated behavioral performance on the combined ingestion of these 2 major constituents of tea.

  9. Theta-band oscillatory activity differs between gamblers and nongamblers comorbid with attention-deficit hyperactivity disorder in a probabilistic reward-learning task.

    PubMed

    Abouzari, Mehdi; Oberg, Scott; Tata, Matthew

    2016-10-01

    Problemgambling is thought to be comorbid with attention-deficit hyperactivity disorder (ADHD). We tested whether gamblers and ADHD patients exhibit similar reward-related brain activity in response to feedback in a gambling task. A series of brain electrical responses can be observed in the electroencephalogram (EEG) and the stimulus-locked event-related potentials (ERP), when participants in a gambling task are given feedback regardless of winning or losing the previous bet. Here, we used a simplified computerized version of the Iowa Gambling Task (IGT) to assess differences in reinforcement-driven choice adaptation between unmedicated ADHD patients with or without problem gambling traits and contrasted with a sex- and age-matched control group. EEG was recorded from the participants while they were engaged in the task which contained two choice options with different net payouts and win/loss probabilities. Learning trend which shows the ability to acquire and use knowledge of the reward outcomes to obtain a positive financial outcome was not observed in ADHD gamblers versus nongamblers. Induced theta-band (4-8Hz) power over frontal cortex was significantly higher in gamblers versus nongamblers in all different high-risk/low-risk win/lose conditions. Whereas induced low alpha (9-11Hz) power at frontal electrodes could only differentiate high-risk lose between gamblers and nongamblers but not the other three conditions between the two groups. The results indicate that ADHD nongamblers do not share with problem gamblers underlying deficits in reward learning. These pilot data highlight the need for studies of ADHD in gambling to elucidate how motivational states are represented during feedback processing.

  10. The Impact of Fine-Scale Disturbances on the Predictability of Vegetation Dynamics and Carbon Flux

    PubMed Central

    Hurtt, G. C.; Thomas, R. Q.; Fisk, J. P.; Dubayah, R. O.; Sheldon, S. L.

    2016-01-01

    Predictions from forest ecosystem models are limited in part by large uncertainties in the current state of the land surface, as previous disturbances have important and lasting influences on ecosystem structure and fluxes that can be difficult to detect. Likewise, future disturbances also present a challenge to prediction as their dynamics are episodic and complex and occur across a range of spatial and temporal scales. While large extreme events such as tropical cyclones, fires, or pest outbreaks can produce dramatic consequences, small fine-scale disturbance events are typically much more common and may be as or even more important. This study focuses on the impacts of these smaller disturbance events on the predictability of vegetation dynamics and carbon flux. Using data on vegetation structure collected for the same domain at two different times, i.e. “repeat lidar data”, we test high-resolution model predictions of vegetation dynamics and carbon flux across a range of spatial scales at an important tropical forest site at La Selva Biological Station, Costa Rica. We found that predicted height change from a height-structured ecosystem model compared well to lidar measured height change at the domain scale (~150 ha), but that the model-data mismatch increased exponentially as the spatial scale of evaluation decreased below 20 ha. We demonstrate that such scale-dependent errors can be attributed to errors predicting the pattern of fine-scale forest disturbances. The results of this study illustrate the strong impact fine-scale forest disturbances have on forest dynamics, ultimately limiting the spatial resolution of accurate model predictions. PMID:27093157

  11. Contrasting patterns of fine-scale herb layer species composition in temperate forests

    NASA Astrophysics Data System (ADS)

    Chudomelová, Markéta; Zelený, David; Li, Ching-Feng

    2017-04-01

    Although being well described at the landscape level, patterns in species composition of forest herb layer are rarely studied at smaller scales. Here, we examined fine-scale environmental determinants and spatial structures of herb layer communities in thermophilous oak- and hornbeam dominated forests of the south-eastern part of the Czech Republic. Species composition of herb layer vegetation and environmental variables were recorded within a fixed grid of 2 × 2 m subplots regularly distributed within 1-ha quadrate plots in three forest stands. For each site, environmental models best explaining species composition were constructed using constrained ordination analysis. Spatial eigenvector mapping was used to model and account for spatial structures in community variation. Mean Ellenberg indicator values calculated for each subplot were used for ecological interpretation of spatially structured residual variation. The amount of variation explained by environmental and spatial models as well as the selection of variables with the best explanatory power differed among sites. As an important environmental factor, relative elevation was common to all three sites, while pH and canopy openness were shared by two sites. Both environmental and community variation was mostly coarse-scaled, as was the spatially structured portion of residual variation. When corrected for bias due to spatial autocorrelation, those environmental factors with already weak explanatory power lost their significance. Only a weak evidence of possibly omitted environmental predictor was found for autocorrelated residuals of site models using mean Ellenberg indicator values. Community structure was determined by different factors at different sites. The relative importance of environmental filtering vs. spatial processes was also site specific, implying that results of fine-scale studies tend to be shaped by local conditions. Contrary to expectations based on other studies, overall dominance of

  12. Fine-Scale Habitat Heterogeneity Influences Occupancy in Terrestrial Mammals in a Temperate Region of Australia.

    PubMed

    Stirnemann, Ingrid; Mortelliti, Alessio; Gibbons, Philip; Lindenmayer, David B

    2015-01-01

    Vegetation heterogeneity is an inherent feature of most ecosystems, characterises the structure of habitat, and is considered an important driver of species distribution patterns. However, quantifying fine-scale heterogeneity of vegetation cover can be time consuming, and therefore it is seldom measured. Here, we determine if heterogeneity is worthwhile measuring, in addition to the amount of cover, when examining species distribution patterns. Further, we investigated the effect of the surrounding landscape heterogeneity on species occupancy. We tested the effect of cover and heterogeneity of trees and shrubs, and the context of the surrounding landscape (number of habitats and distance to an ecotone) on site occupancy of three mammal species (the black wallaby [Wallabia bicolor], the long-nosed bandicoot [Perameles nasuta], and the bush rat [Rattus fuscipes]) within a naturally heterogeneous landscape in a temperate region of Australia. We found that fine-scale heterogeneity of vegetation attributes is an important driver of mammal occurrence of two of these species. Further, we found that, although all three species responded positively to vegetation heterogeneity, different mammals vary in their response to different types of vegetation heterogeneity measurement. For example, the black wallaby responded to the proximity of an ecotone, and the bush rat and the long-nosed bandicoot responded to fine-scale heterogeneity of small tree cover, whereas none of the mammals responded to broad scale heterogeneity (i.e., the number of habitat types). Our results highlight the influence of methodological decisions, such as how heterogeneity vegetation is measured, in quantifying species responses to habitat structures. The findings confirm the importance of choosing meaningful heterogeneity measures when modelling the factors influencing occupancy of the species of interest.

  13. Fine-Scale Habitat Heterogeneity Influences Occupancy in Terrestrial Mammals in a Temperate Region of Australia

    PubMed Central

    Stirnemann, Ingrid; Mortelliti, Alessio; Gibbons, Philip; Lindenmayer, David B.

    2015-01-01

    Vegetation heterogeneity is an inherent feature of most ecosystems, characterises the structure of habitat, and is considered an important driver of species distribution patterns. However, quantifying fine-scale heterogeneity of vegetation cover can be time consuming, and therefore it is seldom measured. Here, we determine if heterogeneity is worthwhile measuring, in addition to the amount of cover, when examining species distribution patterns. Further, we investigated the effect of the surrounding landscape heterogeneity on species occupancy. We tested the effect of cover and heterogeneity of trees and shrubs, and the context of the surrounding landscape (number of habitats and distance to an ecotone) on site occupancy of three mammal species (the black wallaby [Wallabia bicolor], the long-nosed bandicoot [Perameles nasuta], and the bush rat [Rattus fuscipes]) within a naturally heterogeneous landscape in a temperate region of Australia. We found that fine-scale heterogeneity of vegetation attributes is an important driver of mammal occurrence of two of these species. Further, we found that, although all three species responded positively to vegetation heterogeneity, different mammals vary in their response to different types of vegetation heterogeneity measurement. For example, the black wallaby responded to the proximity of an ecotone, and the bush rat and the long-nosed bandicoot responded to fine-scale heterogeneity of small tree cover, whereas none of the mammals responded to broad scale heterogeneity (i.e., the number of habitat types). Our results highlight the influence of methodological decisions, such as how heterogeneity vegetation is measured, in quantifying species responses to habitat structures. The findings confirm the importance of choosing meaningful heterogeneity measures when modelling the factors influencing occupancy of the species of interest. PMID:26394327

  14. The Impact of Fine-Scale Disturbances on the Predictability of Vegetation Dynamics and Carbon Flux.

    PubMed

    Hurtt, G C; Thomas, R Q; Fisk, J P; Dubayah, R O; Sheldon, S L

    2016-01-01

    Predictions from forest ecosystem models are limited in part by large uncertainties in the current state of the land surface, as previous disturbances have important and lasting influences on ecosystem structure and fluxes that can be difficult to detect. Likewise, future disturbances also present a challenge to prediction as their dynamics are episodic and complex and occur across a range of spatial and temporal scales. While large extreme events such as tropical cyclones, fires, or pest outbreaks can produce dramatic consequences, small fine-scale disturbance events are typically much more common and may be as or even more important. This study focuses on the impacts of these smaller disturbance events on the predictability of vegetation dynamics and carbon flux. Using data on vegetation structure collected for the same domain at two different times, i.e. "repeat lidar data", we test high-resolution model predictions of vegetation dynamics and carbon flux across a range of spatial scales at an important tropical forest site at La Selva Biological Station, Costa Rica. We found that predicted height change from a height-structured ecosystem model compared well to lidar measured height change at the domain scale (~150 ha), but that the model-data mismatch increased exponentially as the spatial scale of evaluation decreased below 20 ha. We demonstrate that such scale-dependent errors can be attributed to errors predicting the pattern of fine-scale forest disturbances. The results of this study illustrate the strong impact fine-scale forest disturbances have on forest dynamics, ultimately limiting the spatial resolution of accurate model predictions.

  15. Dispersal, Mating Events and Fine-Scale Genetic Structure in the Lesser Flat-Headed Bats

    PubMed Central

    Guo, Tingting; Flanders, Jon; Zhang, Shuyi

    2013-01-01

    Population genetic structure has important consequences in evolutionary processes and conservation genetics in animals. Fine-scale population genetic structure depends on the pattern of landscape, the permanent movement of individuals, and the dispersal of their genes during temporary mating events. The lesser flat-headed bat (Tylonycteris pachypus) is a nonmigratory Asian bat species that roosts in small groups within the internodes of bamboo stems and the habitats are fragmented. Our previous parentage analyses revealed considerable extra-group mating in this species. To assess the spatial limits and sex-biased nature of gene flow in the same population, we used 20 microsatellite loci and mtDNA sequencing of the ND2 gene to quantify genetic structure among 54 groups of adult flat-headed bats, at nine localities in South China. AMOVA and FST estimates revealed significant genetic differentiation among localities. Alternatively, the pairwise FST values among roosting groups appeared to be related to the incidence of associated extra-group breeding, suggesting the impact of mating events on fine-scale genetic structure. Global spatial autocorrelation analyses showed positive genetic correlation for up to 3 km, indicating the role of fragmented habitat and the specialized social organization as a barrier in the movement of individuals among bamboo forests. The male-biased dispersal pattern resulted in weaker spatial genetic structure between localities among males than among females, and fine-scale analyses supported that relatedness levels within internodes were higher among females than among males. Finally, only females were more related to their same sex roost mates than to individuals from neighbouring roosts, suggestive of natal philopatry in females. PMID:23349888

  16. Modelling Soil-Landscapes in Coastal California Hills Using Fine Scale Terrestrial Lidar

    NASA Astrophysics Data System (ADS)

    Prentice, S.; Bookhagen, B.; Kyriakidis, P. C.; Chadwick, O.

    2013-12-01

    Digital elevation models (DEMs) are the dominant input to spatially explicit digital soil mapping (DSM) efforts due to their increasing availability and the tight coupling between topography and soil variability. Accurate characterization of this coupling is dependent on DEM spatial resolution and soil sampling density, both of which may limit analyses. For example, DEM resolution may be too coarse to accurately reflect scale-dependent soil properties yet downscaling introduces artifactual uncertainty unrelated to deterministic or stochastic soil processes. We tackle these limitations through a DSM effort that couples moderately high density soil sampling with a very fine scale terrestrial lidar dataset (20 cm) implemented in a semiarid rolling hillslope domain where terrain variables change rapidly but smoothly over short distances. Our guiding hypothesis is that in this diffusion-dominated landscape, soil thickness is readily predicted by continuous terrain attributes coupled with catenary hillslope segmentation. We choose soil thickness as our keystone dependent variable for its geomorphic and hydrologic significance, and its tendency to be a primary input to synthetic ecosystem models. In defining catenary hillslope position we adapt a logical rule-set approach that parses common terrain derivatives of curvature and specific catchment area into discrete landform elements (LE). Variograms and curvature-area plots are used to distill domain-scale terrain thresholds from short range order noise characteristic of very fine-scale spatial data. The revealed spatial thresholds are used to condition LE rule-set inputs, rendering a catenary LE map that leverages the robustness of fine-scale terrain data to create a generalized interpretation of soil geomorphic domains. Preliminary regressions show that continuous terrain variables alone (curvature, specific catchment area) only partially explain soil thickness, and only in a subset of soils. For example, at spatial

  17. Patterns of fine-scale plant species richness in dry grasslands across the eastern Balkan Peninsula

    NASA Astrophysics Data System (ADS)

    Palpurina, Salza; Chytrý, Milan; Tzonev, Rossen; Danihelka, Jiří; Axmanová, Irena; Merunková, Kristina; Duchoň, Mário; Karakiev, Todor

    2015-02-01

    Fine-scale plant species richness varies across habitats, climatic and biogeographic regions, but the large-scale context of this variation is insufficiently explored. The patterns at the borders between biomes harbouring rich but different floras are of special interest. Dry grasslands of the eastern Balkan Peninsula, situated in the Eurasian forest-steppe zone and developed under Mediterranean influence, are a specific case of such biome transition. However, there are no studies assessing the patterns of fine-scale species richness and their underlying factors across the eastern Balkans. To explore these patterns, we sampled dry and semi-dry grasslands (phytosociological class Festuco-Brometea) across Bulgaria and SE Romania. In total, 172 vegetation plots of 10 × 10 m2 were sampled, in which all vascular plant species were recorded, soil depth was measured, and soil samples were collected and analysed in a laboratory for pH and plant-available nutrients. Geographic coordinates were used to extract selected climatic variables. Regression trees and linear regressions were used to quantify the relationships between species richness and environmental variables. Climatic factors were identified as the main drivers of species richness: (1) Species richness was strongly positively correlated with the mean temperature of the coldest month: sub-Mediterranean areas of S and E Bulgaria, characterized by warmer winters, were more species-rich. (2) Outside the sub-Mediterranean areas, species richness strongly increased with annual precipitation, which was primarily controlled by altitude. (3) Bedrock type and soil pH also significantly affected dry grassland richness outside the sub-Mediterranean areas. These results suggest that fine-scale species richness of dry grasslands over large areas is driven by processes at the regional level, especially by the difference in the species pools of large regions, in our case the Continental and Mediterranean biogeographic regions

  18. Direct and indirect genetic and fine-scale location effects on breeding date in song sparrows.

    PubMed

    Germain, Ryan R; Wolak, Matthew E; Arcese, Peter; Losdat, Sylvain; Reid, Jane M

    2016-11-01

    Quantifying direct and indirect genetic effects of interacting females and males on variation in jointly expressed life-history traits is central to predicting microevolutionary dynamics. However, accurately estimating sex-specific additive genetic variances in such traits remains difficult in wild populations, especially if related individuals inhabit similar fine-scale environments. Breeding date is a key life-history trait that responds to environmental phenology and mediates individual and population responses to environmental change. However, no studies have estimated female (direct) and male (indirect) additive genetic and inbreeding effects on breeding date, and estimated the cross-sex genetic correlation, while simultaneously accounting for fine-scale environmental effects of breeding locations, impeding prediction of microevolutionary dynamics. We fitted animal models to 38 years of song sparrow (Melospiza melodia) phenology and pedigree data to estimate sex-specific additive genetic variances in breeding date, and the cross-sex genetic correlation, thereby estimating the total additive genetic variance while simultaneously estimating sex-specific inbreeding depression. We further fitted three forms of spatial animal model to explicitly estimate variance in breeding date attributable to breeding location, overlap among breeding locations and spatial autocorrelation. We thereby quantified fine-scale location variances in breeding date and quantified the degree to which estimating such variances affected the estimated additive genetic variances. The non-spatial animal model estimated nonzero female and male additive genetic variances in breeding date (sex-specific heritabilities: 0·07 and 0·02, respectively) and a strong, positive cross-sex genetic correlation (0·99), creating substantial total additive genetic variance (0·18). Breeding date varied with female, but not male inbreeding coefficient, revealing direct, but not indirect, inbreeding

  19. Fine-Scale Genetic Structure and Reproductive Biology of the Blueberry Pathogen Monilinia vaccinii-corymbosi.

    PubMed

    Burchhardt, Kathleen M; Miller, Megan E; Cline, William O; Cubeta, Marc A

    2017-02-01

    The fungus Monilinia vaccinii-corymbosi, a pathogen of Vaccinium spp., requires asexual and sexual spore production to complete its life cycle. A recent study found population structuring of M. vaccinii-corymbosi over a broad spatial scale in the United States. In this study, we examined fine-scale genetic structuring, temporal dynamics, and reproductive biology within a 125-by-132-m blueberry plot from 2010 to 2012. In total, 395 isolates of M. vaccinii-corymbosi were sampled from infected shoots and fruit to examine their multilocus haplotype (MLH) using microsatellite markers. The MLH of 190 single-ascospore isolates from 21 apothecia was also determined. Little to no genetic differentiation and unrestricted gene flow were detected among four sampled time points and between infected tissue types. Discriminant analysis of principal components suggested genetic structuring within the field, with at least K = 3 genetically distinct clusters maintained over four sampled time points. Single-ascospore progeny from eight apothecia had identical MLH and at least two distinct MLH were detected from 13 apothecia. Tests for linkage disequilibrium suggested that genetically diverse ascospore progeny were the product of recombination. This study supports the idea that the fine-scale dynamics of M. vaccinii-corymbosi may be complex, with genetic structuring, inbreeding, and outcrossing detected in the study area.

  20. Fine-Scale Spatial Heterogeneity in the Distribution of Waterborne Protozoa in a Drinking Water Reservoir

    PubMed Central

    Burnet, Jean-Baptiste; Ogorzaly, Leslie; Penny, Christian; Cauchie, Henry-Michel

    2015-01-01

    Background: The occurrence of faecal pathogens in drinking water resources constitutes a threat to the supply of safe drinking water, even in industrialized nations. To efficiently assess and monitor the risk posed by these pathogens, sampling deserves careful design, based on preliminary knowledge on their distribution dynamics in water. For the protozoan pathogens Cryptosporidium and Giardia, only little is known about their spatial distribution within drinking water supplies, especially at fine scale. Methods: Two-dimensional distribution maps were generated by sampling cross-sections at meter resolution in two different zones of a drinking water reservoir. Samples were analysed for protozoan pathogens as well as for E. coli, turbidity and physico-chemical parameters. Results: Parasites displayed heterogeneous distribution patterns, as reflected by significant (oo)cyst density gradients along reservoir depth. Spatial correlations between parasites and E. coli were observed near the reservoir inlet but were absent in the downstream lacustrine zone. Measurements of surface and subsurface flow velocities suggest a role of local hydrodynamics on these spatial patterns. Conclusion: This fine-scale spatial study emphasizes the importance of sampling design (site, depth and position on the reservoir) for the acquisition of representative parasite data and for optimization of microbial risk assessment and monitoring. Such spatial information should prove useful to the modelling of pathogen transport dynamics in drinking water supplies. PMID:26404350

  1. Fine-scale population structure of blue whale wintering aggregations in the Gulf of California.

    PubMed

    Costa-Urrutia, Paula; Sanvito, Simona; Victoria-Cota, Nelva; Enríquez-Paredes, Luis; Gendron, Diane

    2013-01-01

    Population differentiation in environments without well-defined geographical barriers represents a challenge for wildlife management. Based on a comprehensive database of individual sighting records (1988-2009) of blue whales from the winter/calving Gulf of California, we assessed the fine-scale genetic and spatial structure of the population using individual-based approaches. Skin samples of 187 individuals were analyzed for nine microsatellite loci. A single population with no divergence among years and months and no isolation by distance (Rxy = 0.1-0.001, p>0.05) were found. We ran two bayesian clustering methods using Structure and Geneland softwares in two different ways: 1) a general analysis including all individuals in which a single cluster was identified with both softwares; 2) a specific analysis of females only in which two main clusters (Loreto Bay and northern areas, and San Jose-La Paz Bay area) were revealed by Geneland program. This study provides information indicating that blue whales wintering in the Gulf of California are part of a single population unit and showed a fine-scale structure among females, possibly associated with their high site fidelity, particularly when attending calves. It is likely that the loss of genetic variation is minimized by male mediated gene flow, which may reduce the genetic drift effect. Opportunities for kin selection may also influence calf survival and, in consequence, have a positive impact on population demography in this small and endangered population.

  2. Networks Depicting the Fine-Scale Co-Occurrences of Fungi in Soil Horizons

    PubMed Central

    Toju, Hirokazu; Kishida, Osamu; Katayama, Noboru; Takagi, Kentaro

    2016-01-01

    Fungi in soil play pivotal roles in nutrient cycling, pest controls, and plant community succession in terrestrial ecosystems. Despite the ecosystem functions provided by soil fungi, our knowledge of the assembly processes of belowground fungi has been limited. In particular, we still have limited knowledge of how diverse functional groups of fungi interact with each other in facilitative and competitive ways in soil. Based on the high-throughput sequencing data of fungi in a cool-temperate forest in northern Japan, we analyzed how taxonomically and functionally diverse fungi showed correlated fine-scale distributions in soil. By uncovering pairs of fungi that frequently co-occurred in the same soil samples, networks depicting fine-scale co-occurrences of fungi were inferred at the O (organic matter) and A (surface soil) horizons. The results then led to the working hypothesis that mycorrhizal, endophytic, saprotrophic, and pathogenic fungi could form compartmentalized (modular) networks of facilitative, antagonistic, and/or competitive interactions in belowground ecosystems. Overall, this study provides a research basis for further understanding how interspecific interactions, along with sharing of niches among fungi, drive the dynamics of poorly explored biospheres in soil. PMID:27861486

  3. Fine-Scale Population Structure of Blue Whale Wintering Aggregations in the Gulf of California

    PubMed Central

    Costa-Urrutia, Paula; Sanvito, Simona; Victoria-Cota, Nelva; Enríquez-Paredes, Luis; Gendron, Diane

    2013-01-01

    Population differentiation in environments without well-defined geographical barriers represents a challenge for wildlife management. Based on a comprehensive database of individual sighting records (1988–2009) of blue whales from the winter/calving Gulf of California, we assessed the fine-scale genetic and spatial structure of the population using individual-based approaches. Skin samples of 187 individuals were analyzed for nine microsatellite loci. A single population with no divergence among years and months and no isolation by distance (Rxy = 0.1–0.001, p>0.05) were found. We ran two Bayesian clustering methods using Structure and Geneland softwares in two different ways: 1) a general analysis including all individuals in which a single cluster was identified with both softwares; 2) a specific analysis of females only in which two main clusters (Loreto Bay and northern areas, and San Jose-La Paz Bay area) were revealed by Geneland program. This study provides information indicating that blue whales wintering in the Gulf of California are part of a single population unit and showed a fine-scale structure among females, possibly associated with their high site fidelity, particularly when attending calves. It is likely that the loss of genetic variation is minimized by male mediated gene flow, which may reduce the genetic drift effect. Opportunities for kin selection may also influence calf survival and, in consequence, have a positive impact on population demography in this small and endangered population. PMID:23505485

  4. Theory and data for simulating fine-scale human movement in an urban environment

    PubMed Central

    Perkins, T. Alex; Garcia, Andres J.; Paz-Soldán, Valerie A.; Stoddard, Steven T.; Reiner, Robert C.; Vazquez-Prokopec, Gonzalo; Bisanzio, Donal; Morrison, Amy C.; Halsey, Eric S.; Kochel, Tadeusz J.; Smith, David L.; Kitron, Uriel; Scott, Thomas W.; Tatem, Andrew J.

    2014-01-01

    Individual-based models of infectious disease transmission depend on accurate quantification of fine-scale patterns of human movement. Existing models of movement either pertain to overly coarse scales, simulate some aspects of movement but not others, or were designed specifically for populations in developed countries. Here, we propose a generalizable framework for simulating the locations that an individual visits, time allocation across those locations, and population-level variation therein. As a case study, we fit alternative models for each of five aspects of movement (number, distance from home and types of locations visited; frequency and duration of visits) to interview data from 157 residents of the city of Iquitos, Peru. Comparison of alternative models showed that location type and distance from home were significant determinants of the locations that individuals visited and how much time they spent there. We also found that for most locations, residents of two neighbourhoods displayed indistinguishable preferences for visiting locations at various distances, despite differing distributions of locations around those neighbourhoods. Finally, simulated patterns of time allocation matched the interview data in a number of ways, suggesting that our framework constitutes a sound basis for simulating fine-scale movement and for investigating factors that influence it. PMID:25142528

  5. Fine-scale estimations of bioclimatic change in the Valencia region, Spain

    NASA Astrophysics Data System (ADS)

    Miró, Juan Javier; Estrela, María José; Caselles, Vicente; Olcina-Cantos, Jorge

    2016-11-01

    Recent advances in statistical downscaling have allowed the reconstruction of temperatures for the complete 1948-2011 period in a spatial resolution of 90 m and without gaps for the Valencian Community (Spain) and bordering areas. It presently enables analyses in this region, which allows the determination of recent temperature changes at subregional and local scales. The present work focuses on obtaining the thermicity index according to Rivas-Martínez, a well-known indicator of different thermotypes associated with bioclimatic horizons. The change in this index, which has happened in the region between 1948 and 2011, was calculated by generating fine-scale maps of the potential extension of different thermotypes. The results show a greater regression for the thermotypes in a finicolous position, e.g. Orotemperate, Supratemperate and Supramediterranean horizons, which herein indicate greater potential vulnerability in climate change. In the absence of, and given the need for, such fine-scale information, this work should be useful for specialized researchers to spatially limit the potentially most vulnerable biotopes to climate change.

  6. Fine-Scale Crossover Rate Variation on the Caenorhabditis elegans X Chromosome

    PubMed Central

    Bernstein, Max R.; Rockman, Matthew V.

    2016-01-01

    Meiotic recombination creates genotypic diversity within species. Recombination rates vary substantially across taxa, and the distribution of crossovers can differ significantly among populations and between sexes. Crossover locations within species have been found to vary by chromosome and by position within chromosomes, where most crossover events occur in small regions known as recombination hotspots. However, several species appear to lack hotspots despite significant crossover heterogeneity. The nematode Caenorhabditis elegans was previously found to have the least fine-scale variation in crossover distribution among organisms studied to date. It is unclear whether this pattern extends to the X chromosome given its unique compaction through the pachytene stage of meiotic prophase in hermaphrodites. We generated 798 recombinant nested near-isogenic lines (NILs) with crossovers in a 1.41 Mb region on the left arm of the X chromosome to determine if its recombination landscape is similar to that of the autosomes. We find that the fine-scale variation in crossover rate is lower than that of other model species, and is inconsistent with hotspots. The relationship of genomic features to crossover rate is dependent on scale, with GC content, histone modifications, and nucleosome occupancy being negatively associated with crossovers. We also find that the abundances of 4- to 6-bp DNA motifs significantly explain crossover density. These results are consistent with recombination occurring at unevenly distributed sites of open chromatin. PMID:27172189

  7. Magnetic Signatures of Fine-scale Processes in the Ocean Surface Layer

    NASA Astrophysics Data System (ADS)

    Soloviev, A.; Dean, C.; Avera, W. E.

    2015-12-01

    Fine-scale processes in the upper ocean turbulent boundary layer may have a measurable electromagnetic signature. In order to study magnetic signatures of these fine-scale processes, we have applied a magnetohydrodynamic (MHD) model combining a 3D computational fluid dynamics model and electromagnetic block, based on ANSYS Fluent software. In addition, the hydrodynamic component of the MHD model is coupled with a radar imaging algorithm, which potentially provides a link to synthetic aperture radar (SAR) satellite imagery. Capabilities of this model have been demonstrated using a simulation and observation of an internal wave soliton in the Straits of Florida, observed with in situ instrumentation (ADCP mooring) and COSMO Sky Med (SAR) satellite image. We have applied this model to study magnetic signatures of surface waves, freshwater lenses, spatially coherent organized motions in the near-surface layer of the ocean (Langmuir circulation and ramp-like structures), and bio-turbulence induced by diel vertical migrations of zooplankton in some areas of the ocean. Investigation of electromagnetic signatures in upper ocean processes offers a valuable new prospect in air-sea interaction.

  8. Differential oscillatory encoding of foreign speech.

    PubMed

    Pérez, Alejandro; Carreiras, Manuel; Gillon Dowens, Margaret; Duñabeitia, Jon Andoni

    2015-08-01

    Neuronal oscillations play a key role in auditory perception of verbal input, with the oscillatory rhythms of the brain showing synchronization with specific frequencies of speech. Here we investigated the neural oscillatory patterns associated with perceiving native, foreign, and unknown speech. Spectral power and phase synchronization were compared to those of a silent context. Power synchronization to native speech was found in frequency ranges corresponding to the theta band, while no synchronization patterns were found for the foreign speech context and the unknown language context. For phase synchrony, the native and unknown languages showed higher synchronization in the theta-band than the foreign language when compared to the silent condition. These results suggest that neural synchronization patterns are markedly different for native and foreign languages.

  9. Pressure spectra for vortex models of fine-scale homogeneous turbulence

    NASA Astrophysics Data System (ADS)

    Pullin, D. I.

    1995-04-01

    Pressure spectra at large wave numbers are calculated for Lundgren-Townsend vortex models of the fine scales of homogeneous turbulence. Specific results are given for the Burgers vortex and also for the Lundgren-strained spiral vortex. For the latter case, it is found that the contribution to the shell-summed spectrum produced by the interaction between the axisymmetric and nonaxisymmetric components of the velocity field is proportional to k-7/3 (k=‖k‖ is the modulus of the wave number) in agreement with Kolmogorov-type dimensional arguments. Numerical estimates of the dimensionless prefactors for this component are obtained in Kolmogorov scaling variables and comparisons are made with results from the Batchelor-Kolmogorov theory, and with experimental measurement.

  10. MHD Wave Modes Resolved in Fine-Scale Chromospheric Magnetic Structures

    NASA Astrophysics Data System (ADS)

    Verth, G.; Jess, D. B.

    2016-02-01

    Due to its complex and dynamic fine-scale structure, the chromosphere is a particularly challenging region of the Sun's atmosphere to understand. It is now widely accepted that to model chromospheric dynamics, even on a magnetohydrodynamic (MHD) scale, while also calculating spectral line emission, one must realistically include the effects of partial ionization and radiative transfer in a multi-fluid plasma under non-LTE conditions. Accurate quantification of MHD wave energetics must be founded on a precise identification of the actual wave mode being observed. This chapter focuses on MHD kink-mode identification, MHD sausage mode identification, and MHD torsional Alfvén wave identification. It then reviews progress in determining more accurate energy flux estimations of specific MHD wave modes observed in the chromosphere. The chapter finally examines how the discovery of these MHD wave modes has helped us advance the field of chromospheric magnetoseismology.

  11. Strontium isotopes delineate fine-scale natal origins and migration histories of Pacific salmon

    USGS Publications Warehouse

    Brennan, Sean R.; Zimmerman, Christian E.; Fernandez, Diego P.; Cerling, Thure E.; McPhee, Megan V.; Wooller, Matthew J.

    2015-01-01

    Highly migratory organisms present major challenges to conservation efforts. This is especially true for exploited anadromous fish species, which exhibit long-range dispersals from natal sites, complex population structures, and extensive mixing of distinct populations during exploitation. By tracing the migratory histories of individual Chinook salmon caught in fisheries using strontium isotopes, we determined the relative production of natal habitats at fine spatial scales and different life histories. Although strontium isotopes have been widely used in provenance research, we present a new robust framework to simultaneously assess natal sources and migrations of individuals within fishery harvests through time. Our results pave the way for investigating how fine-scale habitat production and life histories of salmon respond to perturbations—providing crucial insights for conservation.

  12. Ecological segregation drives fine-scale cytotype distribution of Senecio carniolicus in the Eastern Alps

    PubMed Central

    Hülber, Karl; Sonnleitner, Michaela; Flatscher, Ruth; Berger, Andreas; Dobrovsky, Rainer; Niessner, Sophie; Nigl, Thomas; Schneeweiss, Gerald M.; Kubešová, Magdalena; Rauchová, Jana; Suda, Jan; Schönswetter, Peter

    2011-01-01

    In order to uncover patterns and processes of segregation of co-existing cytotypes, we investigated a zone in the eastern Alps (Austria) where diploid and hexaploid individuals of the alpine herb Senecio carniolicus Willd. (Asteraceae) co-occur. Linking the fine-scale distribution of cytotypes to environmental and spatial factors revealed segregation along an ecological gradient, which was also reflected in the cytotype-associated plant assemblages. Compared to diploids, hexaploids are found in more species-rich and denser communities. This may be due to their better competitive ability and lower tolerance of abiotic stress compared to the diploids. The lack of any intermediate cytotypes suggests the presence of strong reproductive isolation mechanisms, whose nature is, however, elusive. PMID:22318659

  13. Strontium isotopes delineate fine-scale natal origins and migration histories of Pacific salmon

    PubMed Central

    Brennan, Sean R.; Zimmerman, Christian E.; Fernandez, Diego P.; Cerling, Thure E.; McPhee, Megan V.; Wooller, Matthew J.

    2015-01-01

    Highly migratory organisms present major challenges to conservation efforts. This is especially true for exploited anadromous fish species, which exhibit long-range dispersals from natal sites, complex population structures, and extensive mixing of distinct populations during exploitation. By tracing the migratory histories of individual Chinook salmon caught in fisheries using strontium isotopes, we determined the relative production of natal habitats at fine spatial scales and different life histories. Although strontium isotopes have been widely used in provenance research, we present a new robust framework to simultaneously assess natal sources and migrations of individuals within fishery harvests through time. Our results pave the way for investigating how fine-scale habitat production and life histories of salmon respond to perturbations—providing crucial insights for conservation. PMID:26601173

  14. Effects of Fine-Scale Landscape Variability on Satellite-Derived Land Surface Temperature Products Over Sparse Vegetation Canopies

    NASA Astrophysics Data System (ADS)

    Powell, R. L.; Goulden, M.; Peterson, S.; Roberts, D. A.; Still, C. J.

    2015-12-01

    Temperature is a primary environmental control on biological systems and processes at a range of spatial and temporal scales, from controlling biochemical processes such as photosynthesis to influencing continental-scale species distribution. The Landsat satellite series provides a long record (since the mid-1980s) of relatively high spatial resolution thermal infrared (TIR) imagery, from which we derive land surface temperature (LST) grids. Here, we investigate fine spatial resolution factors that influence Landsat-derived LST over a spectrally and spatially heterogeneous landscape. We focus on paired sites (inside/outside a 1994 fire scar) within a pinyon-juniper scrubland in Southern California. The sites have nearly identical micro-meteorology and vegetation species composition, but distinctly different vegetation abundance and structure. The tower at the unburned site includes a number of in-situ imaging tools to quantify vegetation properties, including a thermal camera on a pan-tilt mount, allowing hourly characterization of landscape component temperatures (e.g., sunlit canopy, bare soil, leaf litter). We use these in-situ measurements to assess the impact of fine-scale landscape heterogeneity on estimates of LST, including sensitivity to (i) the relative abundance of component materials, (ii) directional effects due to solar and viewing geometry, (iii) duration of sunlit exposure for each compositional type, and (iv) air temperature. To scale these properties to Landsat spatial resolution (~100-m), we characterize the sub-pixel composition of landscape components (in addition to shade) by applying spectral mixture analysis (SMA) to the Landsat Operational Land Imager (OLI) spectral bands and test the sensitivity of the relationships established with the in-situ data at this coarser scale. The effects of vegetation abundance and cover height versus other controls on satellite-derived estimates of LST will be assessed by comparing estimates at the burned vs

  15. Breed Locally, Disperse Globally: Fine-Scale Genetic Structure Despite Landscape-Scale Panmixia in a Fire-Specialist

    PubMed Central

    Pierson, Jennifer C.; Allendorf, Fred W.; Drapeau, Pierre; Schwartz, Michael K.

    2013-01-01

    An exciting advance in the understanding of metapopulation dynamics has been the investigation of how populations respond to ephemeral patches that go ‘extinct’ during the lifetime of an individual. Previous research has shown that this scenario leads to genetic homogenization across large spatial scales. However, little is known about fine-scale genetic structuring or how this changes over time in ephemeral patches. We predicted that species that specialize on ephemeral habitats will delay dispersal to exploit natal habitat patches while resources are plentiful and thus display fine-scale structure. To investigate this idea, we evaluated the effect of frequent colonization of ephemeral habitats on the fine-scale genetic structure of a fire specialist, the black-backed woodpecker (Picoides arcticus) and found a pattern of fine-scale genetic structure. We then tested for differences in spatial structure between sexes and detected a pattern consistent with male-biased dispersal. We also detected a temporal increase in relatedness among individuals within newly burned forest patches. Our results indicate that specialist species that outlive their ephemeral patches can accrue significant fine-scale spatial structure that does not necessarily affect spatial structure at larger scales. This highlights the importance of both spatial and temporal scale considerations in both sampling and data interpretation of molecular genetic results. PMID:23825646

  16. Breed locally, disperse globally: fine-scale genetic structure despite landscape-scale panmixia in a fire-specialist.

    PubMed

    Pierson, Jennifer C; Allendorf, Fred W; Drapeau, Pierre; Schwartz, Michael K

    2013-01-01

    An exciting advance in the understanding of metapopulation dynamics has been the investigation of how populations respond to ephemeral patches that go 'extinct' during the lifetime of an individual. Previous research has shown that this scenario leads to genetic homogenization across large spatial scales. However, little is known about fine-scale genetic structuring or how this changes over time in ephemeral patches. We predicted that species that specialize on ephemeral habitats will delay dispersal to exploit natal habitat patches while resources are plentiful and thus display fine-scale structure. To investigate this idea, we evaluated the effect of frequent colonization of ephemeral habitats on the fine-scale genetic structure of a fire specialist, the black-backed woodpecker (Picoides arcticus) and found a pattern of fine-scale genetic structure. We then tested for differences in spatial structure between sexes and detected a pattern consistent with male-biased dispersal. We also detected a temporal increase in relatedness among individuals within newly burned forest patches. Our results indicate that specialist species that outlive their ephemeral patches can accrue significant fine-scale spatial structure that does not necessarily affect spatial structure at larger scales. This highlights the importance of both spatial and temporal scale considerations in both sampling and data interpretation of molecular genetic results.

  17. Fine-scale features on bioreplicated decoys of the emerald ash borer provide necessary visual verisimilitude

    NASA Astrophysics Data System (ADS)

    Domingue, Michael J.; Pulsifer, Drew P.; Narkhede, Mahesh S.; Engel, Leland G.; Martín-Palma, Raúl J.; Kumar, Jayant; Baker, Thomas C.; Lakhtakia, Akhlesh

    2014-03-01

    The emerald ash borer (EAB), Agrilus planipennis, is an invasive tree-killing pest in North America. Like other buprestid beetles, it has an iridescent coloring, produced by a periodically layered cuticle whose reflectance peaks at 540 nm wavelength. The males perform a visually mediated ritualistic mating flight directly onto females poised on sunlit leaves. We attempted to evoke this behavior using artificial visual decoys of three types. To fabricate decoys of the first type, a polymer sheet coated with a Bragg-stack reflector was loosely stamped by a bioreplicating die. For decoys of the second type, a polymer sheet coated with a Bragg-stack reflector was heavily stamped by the same die and then painted green. Every decoy of these two types had an underlying black absorber layer. Decoys of the third type were produced by a rapid prototyping machine and painted green. Fine-scale features were absent on the third type. Experiments were performed in an American ash forest infested with EAB, and a European oak forest home to a similar pest, the two-spotted oak borer (TSOB), Agrilus biguttatus. When pinned to leaves, dead EAB females, dead TSOB females, and bioreplicated decoys of both types often evoked the complete ritualized flight behavior. Males also initiated approaches to the rapidly prototyped decoy, but would divert elsewhere without making contact. The attraction of the bioreplicated decoys was also demonstrated by providing a high dc voltage across the decoys that stunned and killed approaching beetles. Thus, true bioreplication with fine-scale features is necessary to fully evoke ritualized visual responses in insects, and provides an opportunity for developing insecttrapping technologies.

  18. Unresolved Fine-scale Structure in Solar Coronal Loop-tops

    NASA Astrophysics Data System (ADS)

    Scullion, E.; Rouppe van der Voort, L.; Wedemeyer, S.; Antolin, P.

    2014-12-01

    New and advanced space-based observing facilities continue to lower the resolution limit and detect solar coronal loops in greater detail. We continue to discover even finer substructures within coronal loop cross-sections, in order to understand the nature of the solar corona. Here, we push this lower limit further to search for the finest coronal loop substructures, through taking advantage of the resolving power of the Swedish 1 m Solar Telescope/CRisp Imaging Spectro-Polarimeter (CRISP), together with co-observations from the Solar Dynamics Observatory/Atmospheric Image Assembly (AIA). High-resolution imaging of the chromospheric Hα 656.28 nm spectral line core and wings can, under certain circumstances, allow one to deduce the topology of the local magnetic environment of the solar atmosphere where its observed. Here, we study post-flare coronal loops, which become filled with evaporated chromosphere that rapidly condenses into chromospheric clumps of plasma (detectable in Hα) known as a coronal rain, to investigate their fine-scale structure. We identify, through analysis of three data sets, large-scale catastrophic cooling in coronal loop-tops and the existence of multi-thermal, multi-stranded substructures. Many cool strands even extend fully intact from loop-top to footpoint. We discover that coronal loop fine-scale strands can appear bunched with as many as eight parallel strands within an AIA coronal loop cross-section. The strand number density versus cross-sectional width distribution, as detected by CRISP within AIA-defined coronal loops, most likely peaks at well below 100 km, and currently, 69% of the substructure strands are statistically unresolved in AIA coronal loops.

  19. Fine-scale spatial genetic structure and dispersal among spotted salamander (Ambystoma maculatum) breeding populations.

    PubMed

    Zamudio, Kelly R; Wieczorek, Ania M

    2007-01-01

    We examined fine-scale genetic variation among breeding aggregations of the spotted salamander (Ambystoma maculatum) to quantify dispersal, interpopulation connectivity and population genetic structure. Spotted salamanders rely on temporary ponds or wetlands for aggregate breeding. Adequate breeding sites are relatively isolated from one another and field studies suggest considerable adult site fidelity; therefore, we expected to find population structure and differentiation at small spatial scales. We used microsatellites to estimate population structure and dispersal among 29 breeding aggregations in Tompkins County, New York, USA, an area encompassing 1272 km(2). Bayesian and frequency-based analyses revealed fine-scale genetic structure with two genetically defined demes: the North deme included seven breeding ponds, and the South deme included 13 ponds. Nine ponds showed evidence of admixture between these two genetic pools. Bayesian assignment tests for detection of interpopulation dispersal indicate that immigration among ponds is common within demes, and that certain populations serve as sources of immigrants to neighbouring ponds. Likewise, spatial genetic correlation analyses showed that populations < or = 4.8 km distant from each other show significant genetic correlation that is not evident at higher scales. Within-population levels of relatedness are consistently larger than expected if mating were completely random across ponds, and in the case of a few ponds, within-population processes such as inbreeding or reproductive skew contribute significantly to differentiation from neighbouring ponds. Our data underscore the importance of these within-population processes as a source of genetic diversity across the landscape, despite considerable population connectivity. Our data further suggest that spotted salamander breeding groups behave as metapopulations, with population clusters as functional units, but sufficient migration among demes to allow for

  20. An Improvement of Fine Scale Wind Field Prediction using WRF/MMIF Models for CALPUFF Application.

    NASA Astrophysics Data System (ADS)

    Kim, A. L.; Koo, Y. S.

    2014-12-01

    Accurate simulation of CALPUFF dispersion modeling is largely dependent on the data sets which are properly resolved in the spatial and temporal evolution of meteorological field on a wide range of scales. The fine scale field wind of 100 m spatial resolution is required for the CALPUFF modeling in the complex terrain near the coastal area. The objective of this paper is to provide information how to calculate the fine scale wind field using recent advances in the meteorological model. The diagnostic model of CALMET has been used to generate fine grid scale wind field by interpolating output of mesoscale prognostic weather models of MM5 (short for Fifth-Generation Penn State/NCAR Mesoscale Model) and WRF (Weather Research and Forecast). The MMIF(The Mesoscale Model Interface Program) interfacial program directly converting WRF meteorological output to formats appropriate for CALPUFF modeling without diagnostic interpolations is recently developed. The modeling comparison between WRF/CALMET and WRF/MMIF was carried out to find out a best way in generating fine wind field in the complex geological conditions. For the WRF/CALMET modeling, WRF model output of 900m grid resolution was provided to CALMET model and CALMET then calculated the fine grid resolution of 100m by diagnostically interpolating the WRF output. For the WRF/MMIF modeling, the WRF model directly calculate the fine grid of 100m and the MMIF program was used to convert WRF data. In order to validate model performance of two methods, simulated variables of meteorological fields were compared with observations at the landfill site near the coast in KOREA. It is found that WRF/MMIF is in better agreement with observations than CALWRF/CALMET in respect to the statics of RMSE and IOA. CALPUFF modeling with landfill emission data of H2S was performed and compared with monitoring data to identify effects on meteorological data on the final outcome of CALPUFF dispersion modeling.

  1. Lack of sex-biased dispersal promotes fine-scale genetic structure in alpine ungulates

    USGS Publications Warehouse

    Roffler, Gretchen H.; Talbot, Sandra L.; Luikart, Gordon; Sage, George K.; Pilgrim, Kristy L.; Adams, Layne G.; Schwartz, Michael K.

    2014-01-01

    Identifying patterns of fine-scale genetic structure in natural populations can advance understanding of critical ecological processes such as dispersal and gene flow across heterogeneous landscapes. Alpine ungulates generally exhibit high levels of genetic structure due to female philopatry and patchy configuration of mountain habitats. We assessed the spatial scale of genetic structure and the amount of gene flow in 301 Dall’s sheep (Ovis dalli dalli) at the landscape level using 15 nuclear microsatellites and 473 base pairs of the mitochondrial (mtDNA) control region. Dall’s sheep exhibited significant genetic structure within contiguous mountain ranges, but mtDNA structure occurred at a broader geographic scale than nuclear DNA within the study area, and mtDNA structure for other North American mountain sheep populations. No evidence of male-mediated gene flow or greater philopatry of females was observed; there was little difference between markers with different modes of inheritance (pairwise nuclear DNA F ST = 0.004–0.325; mtDNA F ST = 0.009–0.544), and males were no more likely than females to be recent immigrants. Historical patterns based on mtDNA indicate separate northern and southern lineages and a pattern of expansion following regional glacial retreat. Boundaries of genetic clusters aligned geographically with prominent mountain ranges, icefields, and major river valleys based on Bayesian and hierarchical modeling of microsatellite and mtDNA data. Our results suggest that fine-scale genetic structure in Dall’s sheep is influenced by limited dispersal, and structure may be weaker in populations occurring near ancestral levels of density and distribution in continuous habitats compared to other alpine ungulates that have experienced declines and marked habitat fragmentation.

  2. Clonal growth and fine-scale genetic structure in tanoak (Notholithocarpus densiflorus: Fagaceae).

    PubMed

    Dodd, Richard S; Mayer, Wasima; Nettel, Alejandro; Afzal-Rafii, Zara

    2013-01-01

    The combination of sprouting and reproduction by seed can have important consequences on fine-scale spatial distribution of genetic structure (SGS). SGS is an important consideration for species' restoration because it determines the minimum distance among seed trees to maximize genetic diversity while not prejudicing locally adapted genotypes. Local environmental conditions can be expected to influence levels of clonal spread and SGS, particularly in the case of disturbance regimes such as fire. Here, we characterize fine-scale genetic structure and clonal spread in tanoak from drier upland sites and more mesic lowland woodlands. Clonal spread was a significant mode of stand development, but spread was limited on average to about 5-6 m. Gene dispersal was decomposed into clonal and sexual components. The latter varied according to whether it was estimated from all ramets with the clonal component removed or for a single ramet per genet. We used the difference in these 2 estimates of gene dispersal as a measure of the effect of clonality on effective population size in this species. Although upland sites had a greater number of ramets per genet, most of the other indices computed were not significantly different. However, they tended to show greater heterozygote excess and shorter gene dispersal distances than the lowland sites. The average distance among inferred sibships on upland sites was approximately at the scale of maximum clonal range. This was not the case on lowland sites, where sibs were more dispersed. We recommend minimum distances among seed trees to avoid selecting clones and to maximize genetic diversity for restoration.

  3. Unresolved fine-scale structure in solar coronal loop-tops

    SciTech Connect

    Scullion, E.; Van der Voort, L. Rouppe; Wedemeyer, S.; Antolin, P.

    2014-12-10

    New and advanced space-based observing facilities continue to lower the resolution limit and detect solar coronal loops in greater detail. We continue to discover even finer substructures within coronal loop cross-sections, in order to understand the nature of the solar corona. Here, we push this lower limit further to search for the finest coronal loop substructures, through taking advantage of the resolving power of the Swedish 1 m Solar Telescope/CRisp Imaging Spectro-Polarimeter (CRISP), together with co-observations from the Solar Dynamics Observatory/Atmospheric Image Assembly (AIA). High-resolution imaging of the chromospheric Hα 656.28 nm spectral line core and wings can, under certain circumstances, allow one to deduce the topology of the local magnetic environment of the solar atmosphere where its observed. Here, we study post-flare coronal loops, which become filled with evaporated chromosphere that rapidly condenses into chromospheric clumps of plasma (detectable in Hα) known as a coronal rain, to investigate their fine-scale structure. We identify, through analysis of three data sets, large-scale catastrophic cooling in coronal loop-tops and the existence of multi-thermal, multi-stranded substructures. Many cool strands even extend fully intact from loop-top to footpoint. We discover that coronal loop fine-scale strands can appear bunched with as many as eight parallel strands within an AIA coronal loop cross-section. The strand number density versus cross-sectional width distribution, as detected by CRISP within AIA-defined coronal loops, most likely peaks at well below 100 km, and currently, 69% of the substructure strands are statistically unresolved in AIA coronal loops.

  4. Binary Oscillatory Crossflow Electrophoresis

    NASA Technical Reports Server (NTRS)

    Molloy, Richard F.; Gallagher, Christopher T.; Leighton, David T., Jr.

    1997-01-01

    Electrophoresis has long been recognized as an effective analytic technique for the separation of proteins and other charged species, however attempts at scaling up to accommodate commercial volumes have met with limited success. In this report we describe a novel electrophoretic separation technique - Binary Oscillatory Crossflow Electrophoresis (BOCE). Numerical simulations indicate that the technique has the potential for preparative scale throughputs with high resolution, while simultaneously avoiding many problems common to conventional electrophoresis. The technique utilizes the interaction of an oscillatory electric field and a transverse oscillatory shear flow to create an active binary filter for the separation of charged protein species. An oscillatory electric field is applied across the narrow gap of a rectangular channel inducing a periodic motion of charged protein species. The amplitude of this motion depends on the dimensionless electrophoretic mobility, alpha = E(sub o)mu/(omega)d, where E(sub o) is the amplitude of the electric field oscillations, mu is the dimensional mobility, omega is the angular frequency of oscillation and d is the channel gap width. An oscillatory shear flow is induced along the length of the channel resulting in the separation of species with different mobilities. We present a model that predicts the oscillatory behavior of charged species and allows estimation of both the magnitude of the induced convective velocity and the effective diffusivity as a function of a in infinitely long channels. Numerical results indicate that in addition to the mobility dependence, the steady state behavior of solute species may be strongly affected by oscillating fluid into and out of the active electric field region at the ends of the cell. The effect is most pronounced using time dependent shear flows of the same frequency (cos((omega)t)) flow mode) as the electric field oscillations. Under such conditions, experiments indicate that

  5. Fine-Scale Density Wave Structure of Saturn's Main Rings: A Hydrodynamic Theory

    NASA Astrophysics Data System (ADS)

    Griv, Evgeny; Gedalin, Michael

    The theoretical studies of Maxwell (1859) have showed that the rings around Saturn could not be solid or liquid, but rather a swarm of millions of individual particles rotating in separate concentric orbits at different speeds. A modern very popular model of the particles in Saturn's rings is a smooth ice sphere, whose restitution coefficient is quite high (exceeding 0.63) and decreases as the collision velocity increases. In this work, the linear stability of the Saturnian ring disk of mutually gravitating and physically colliding particles is examined with special emphasis on its fine-scale of the order of 100 m density wave structure, that is, almost regularly spaced, aligned cylindric density enhancements and optically-thin zones with the width and the spacing between them of roughly several tens particle diameters. Jeans' instabilities of small-amplitude gravity perturbations (e.g., those produced by a spontaneous disturbance) are analyzed analytically through the use of Navier-Stokes dynamical equations of a compressible fluid. An essential feature of this study is that the theory is not restricted by any assumptions regarding the thickness of the system. The simple model of the system is considered: the ring disk is considered to be thin, a weakly spatially inhomogeneous, and its structure is considered in a horizontally local short-wave approximation. We show that the disk is probably unstable and gravity perturbations grow effectively within a few orbital periods; self-gravitation plays a key role in the formation of the fine-scale structure while particle collisions play a secondary role. The predictions of the theory are compared with recent observations of Saturn's rings by the Cassini spacecraft and are found to be in good agreement. Particulary, it appears very likely that some of the microstructures observed in Saturn's A and B rings -both axisymmetric and nonaxisymmetric ones -are manifestations of these effects produced by Jeans' gravitational

  6. On Time/Space Aggregation of Fine-Scale Error Estimates (Invited)

    NASA Astrophysics Data System (ADS)

    Huffman, G. J.

    2013-12-01

    Estimating errors inherent in fine time/space-scale satellite precipitation data sets is still an on-going problem and a key area of active research. Complicating features of these data sets include the intrinsic intermittency of the precipitation in space and time and the resulting highly skewed distribution of precipitation rates. Additional issues arise from the subsampling errors that satellites introduce, the errors due to retrieval algorithms, and the correlated error that retrieval and merger algorithms sometimes introduce. Several interesting approaches have been developed recently that appear to make progress on these long-standing issues. At the same time, the monthly averages over 2.5°x2.5° grid boxes in the Global Precipitation Climatology Project (GPCP) Satellite-Gauge (SG) precipitation data set follow a very simple sampling-based error model (Huffman 1997) with coefficients that are set using coincident surface and GPCP SG data. This presentation outlines the unsolved problem of how to aggregate the fine-scale errors (discussed above) to an arbitrary time/space averaging volume for practical use in applications, reducing in the limit to simple Gaussian expressions at the monthly 2.5°x2.5° scale. Scatter diagrams with different time/space averaging show that the relationship between the satellite and validation data improves due to the reduction in random error. One of the key, and highly non-linear, issues is that fine-scale estimates tend to have large numbers of cases with points near the axes on the scatter diagram (one of the values is exactly or nearly zero, while the other value is higher). Averaging 'pulls' the points away from the axes and towards the 1:1 line, which usually happens for higher precipitation rates before lower rates. Given this qualitative observation of how aggregation affects error, we observe that existing aggregation rules, such as the Steiner et al. (2003) power law, only depend on the aggregated precipitation rate

  7. Fine-Scale Relief in the Amazon Drives Large Scale Ecohydrological Processes

    NASA Astrophysics Data System (ADS)

    Nobre, A. D.; Cuartas, A.; Hodnett, M.; Saleska, S. R.

    2014-12-01

    Access to soil water by roots is a key ecophysiological factor for plant productivity in natural systems. Periodically during dry seasons or critically during episodic climate droughts, shortage of water supply can reduce or severely impair plant life. At the other extreme persistent soil waterlogging will limit root respiration and restrict local establishment to adapted species, usually leading to stunted and less productive communities. Soil-water availability is therefore a very important climate variable controlling plant physiology and ecosystem dynamics. Terra-firme, the non-seasonally floodable terrain that covers 82% of the landscape in Amazonia,[1] supports the most massive part of the rainforest ecosystem. The availability of soil water data for terra-firme is scant and very coarse. This lack of data has hampered observational and modeling studies aiming to develop a large-scale integrative ecohydrological picture of Amazonia and its vulnerability to climate change. We have mapped the Amazon basin with a new terrain model developed in our group (HAND, Height Above the Nearest drainage[2]), delineating soil water environments using topographical data from the SRTM digital elevation model (250 m horizontal interpolated resolution). The preliminary results show that more than 50% of Terra-firme has the water table very close to the surface (up to 2 m deep), while the remainder of the upland landscape has variable degree of dependence on non-saturated soil (vadose layer). The mapping also shows extremely heterogeneous patterns of fine-scale relief across the basin, which implies complex ecohydrological regional forcing on the forest physiology. Ecoclimate studies should therefore take into account fine-scale relief and its implications for soil-water availability to plant processes. [1] Melack, J. M., & Hess, L. L. (2011). Remote sensing of the distribution and extent of wetlands in the Amazon basin. In W. J. Junk & M. Piedade (Eds.), Amazonian floodplain

  8. Fine-scale density wave structure of Saturn's A and B rings: Theory and simulations

    NASA Astrophysics Data System (ADS)

    Griv, Evgeny

    We examine the linear stability of the Saturnian ring disk of mutually gravitating and physically colliding particles with special emphasis on its fine-scale of the order of 100 m density wave structure, that is, almost regularly spaced, aligned cylindric density enhancements and optically-thin zones with the width and the spacing between them of roughly several tens particle diameters. We analyze the Jeans’ instabilities of gravity perturbations (e.g. those produced by a spontaneous disturbance) analytically by using the Navier-Stokes dynamical equations of a compressible fluid. For the first time in planetary ring dynamics, the theory is not restricted by any assumptions about the thickness of the system. We consider a simple model of the system consisting of a three-dimensional ring disk that is weakly inhomogeneous and whose structure is analyzed by making a horizontally local short-wave approximation. We demonstrate that the disk is Jeans-unstable and that gravity perturbations grow effectively within a few orbital periods. We find that self-gravitation plays a key role in the formation of the fine structure. The predictions of the theory are compared with observations of Saturn’s rings by the Cassini spacecraft and are found to be in good agreement. In particular, it appears very likely that some of the quasi-periodic microstructures observed in Saturn’s A and B rings - both axisymmetric and nonaxisymmetric ones - are manifestations of these effects. Thus, one can attribute the fine-scale structure observed in Saturn’s A and B rings in Cassini data to the development of free Lin-Shu type compression waves, or density waves -- normal modes -- developing in the plane of the system. From the well-developed theory of galactic spiral density waves, a free density wave is known to rotate in a rigid-body manner and to not be affected by differential rotation of the ring disk. We argue that the quasi-periodic density enhancements revealed in Cassini data are

  9. Novel laboratory methods for determining the fine scale electrical resistivity structure of core

    NASA Astrophysics Data System (ADS)

    Haslam, E. P.; Gunn, D. A.; Jackson, P. D.; Lovell, M. A.; Aydin, A.; Prance, R. J.; Watson, P.

    2014-12-01

    High-resolution electrical resistivity measurements are made on saturated rocks using novel laboratory instrumentation and multiple electrical voltage measurements involving in principle a four-point electrode measurement but with a single, moving electrode. Flat, rectangular core samples are scanned by varying the electrode position over a range of hundreds of millimetres with an accuracy of a tenth of a millimetre. Two approaches are tested involving a contact electrode and a non-contact electrode arrangement. The first galvanic method uses balanced cycle switching of a floating direct current (DC) source to minimise charge polarisation effects masking the resistivity distribution related to fine scale structure. These contacting electrode measurements are made with high common mode noise rejection via differential amplification with respect to a reference point within the current flow path. A computer based multifunction data acquisition system logs the current through the sample and voltages along equipotentials from which the resistivity measurements are derived. Multiple measurements are combined to create images of the surface resistivity structure, with variable spatial resolution controlled by the electrode spacing. Fine scale sedimentary features and open fractures in saturated rocks are interpreted from the measurements with reference to established relationships between electrical resistivity and porosity. Our results successfully characterise grainfall lamination and sandflow cross-stratification in a brine saturated, dune bedded core sample representative of a southern North Sea reservoir sandstone, studied using the system in constant current, variable voltage mode. In contrast, in a low porosity marble, identification of open fracture porosity against a background very low matrix porosity is achieved using the constant voltage, variable current mode. This new system is limited by the diameter of the electrode that for practical reasons can only be

  10. FINE SCALE AIR QUALITY MODELING USING DISPERSION AND CMAQ MODELING APPROACHES: AN EXAMPLE APPLICATION IN WILMINGTON, DE

    EPA Science Inventory

    Characterization of spatial variability of air pollutants in an urban setting at fine scales is critical for improved air toxics exposure assessments, for model evaluation studies and also for air quality regulatory applications. For this study, we investigate an approach that su...

  11. A New Multibeam Sonar Technique for Evaluating Fine-Scale Fish Behavior Near Hydroelectric Dam Guidance Structures

    SciTech Connect

    Johnson, Robert L.; Simmons, Mary Ann; Simmons, Carver S.; Blanton, Susan L.; Coutant, C.

    2002-03-07

    This book chapter describes a Dual-Head Multibeam Sonar (DHMS) system developed by Battelle and deployed at two dam sites on the Snake and Columbia rivers in Washington State to evaluate the fine-scale (

  12. Polygamy and an absence of fine-scale structure in Dendroctonus ponderosae (Hopk.) (Coleoptera: Curcilionidae) confirmed using molecular markers.

    PubMed

    Janes, J K; Roe, A D; Rice, A V; Gorrell, J C; Coltman, D W; Langor, D W; Sperling, F A H

    2016-01-01

    An understanding of mating systems and fine-scale spatial genetic structure is required to effectively manage forest pest species such as Dendroctonus ponderosae (mountain pine beetle). Here we used genome-wide single-nucleotide polymorphisms to assess the fine-scale genetic structure and mating system of D. ponderosae collected from a single stand in Alberta, Canada. Fine-scale spatial genetic structure was absent within the stand and the majority of genetic variation was best explained at the individual level. Relatedness estimates support previous reports of pre-emergence mating. Parentage assignment tests indicate that a polygamous mating system better explains the relationships among individuals within a gallery than the previously reported female monogamous/male polygynous system. Furthermore, there is some evidence to suggest that females may exploit the galleries of other females, at least under epidemic conditions. Our results suggest that current management models are likely to be effective across large geographic areas based on the absence of fine-scale genetic structure.

  13. Polygamy and an absence of fine-scale structure in Dendroctonus ponderosae (Hopk.) (Coleoptera: Curcilionidae) confirmed using molecular markers

    PubMed Central

    Janes, J K; Roe, A D; Rice, A V; Gorrell, J C; Coltman, D W; Langor, D W; Sperling, F A H

    2016-01-01

    An understanding of mating systems and fine-scale spatial genetic structure is required to effectively manage forest pest species such as Dendroctonus ponderosae (mountain pine beetle). Here we used genome-wide single-nucleotide polymorphisms to assess the fine-scale genetic structure and mating system of D. ponderosae collected from a single stand in Alberta, Canada. Fine-scale spatial genetic structure was absent within the stand and the majority of genetic variation was best explained at the individual level. Relatedness estimates support previous reports of pre-emergence mating. Parentage assignment tests indicate that a polygamous mating system better explains the relationships among individuals within a gallery than the previously reported female monogamous/male polygynous system. Furthermore, there is some evidence to suggest that females may exploit the galleries of other females, at least under epidemic conditions. Our results suggest that current management models are likely to be effective across large geographic areas based on the absence of fine-scale genetic structure. PMID:26286666

  14. Significant spatial aggregation and fine-scale genetic structure in the homosporous fern Cyrtomium falcatum (Dryopteridaceae).

    PubMed

    Chung, Mi Yoon; Chung, Myong Gi

    2013-08-01

    Spores of homosporous ferns are small, wind-borne and thus have the potential for long-distance dispersal. This common perception has led to a prediction of near-random spatial genetic structure within fern populations. Spore dispersal and spore bank studies, however, indicate that most spores fall close to the maternal plant (< 5 m), supporting a prediction of significant fine-scale genetic structure (FSGS) within populations. To determine which of these two hypotheses is more likely to occur in nature, we measured inbreeding and quantified the spatial distribution of individuals and allozyme-based genotypes using spatial autocorrelation methods within four populations of the fern Cyrtomium falcatum in southern South Korea. Inbreeding levels were low, and all populations exhibited significant aggregation of individuals and strong FSGS. The present results support the second hypothesis, and the substantial FSGS in C. falcatum could reflect the unique features of most homosporous ferns (outcrossing mating systems that lead a majority of spores to occur at short distances and a very limited dispersal distance of male gametes). Although fern spores are physically analogous to orchid seeds, the intensity of FSGS exhibited in C. falcatum is four times stronger than that in 16 terrestrial orchid species.

  15. Inter-annual maintenance of the fine-scale genetic structure in a biennial plant.

    PubMed

    Valverde, Javier; Gómez, José María; García, Cristina; Sharbel, Timothy F; Jiménez, María Noelia; Perfectti, Francisco

    2016-11-24

    Within plant populations, space-restricted gene movement, together with environmental heterogeneity, can result in a spatial variation in gene frequencies. In biennial plants, inter-annual flowering migrants can homogenize gene frequencies between consecutive cohorts. However, the actual impact of these migrants on spatial genetic variation remains unexplored. Here, we used 10 nuclear microsatellite and one plastid genetic marker to characterize the spatial genetic structure within two consecutive cohorts in a population of the biennial plant Erysimum mediohispanicum (Brassicaceae). We explored the maintenance of this structure between consecutive flowering cohorts at different levels of complexity, and investigated landscape effects on gene flow. We found that cohorts were not genetically differentiated and showed a spatial genetic structure defined by a negative genetic-spatial correlation at fine scale that varied in intensity with compass directions. This spatial genetic structure was maintained when comparing plants from different cohorts. Additionally, genotypes were consistently associated with environmental factors such as light availability and soil composition, but to a lesser extent compared with the spatial autocorrelation. We conclude that inter-annual migrants, in combination with limited seed dispersal and environmental heterogeneity, play a major role in shaping and maintaining the spatial genetic structure among cohorts in this biennial plant.

  16. Regulation of the demographic structure in isomorphic biphasic life cycles at the spatial fine scale.

    PubMed

    Vieira, Vasco Manuel Nobre de Carvalho da Silva; Mateus, Marcos Duarte

    2014-01-01

    Isomorphic biphasic algal life cycles often occur in the environment at ploidy abundance ratios (Haploid:Diploid) different from 1. Its spatial variability occurs within populations related to intertidal height and hydrodynamic stress, possibly reflecting the niche partitioning driven by their diverging adaptation to the environment argued necessary for their prevalence (evolutionary stability). Demographic models based in matrix algebra were developed to investigate which vital rates may efficiently generate an H:D variability at a fine spatial resolution. It was also taken into account time variation and type of life strategy. Ploidy dissimilarities in fecundity rates set an H:D spatial structure miss-fitting the ploidy fitness ratio. The same happened with ploidy dissimilarities in ramet growth whenever reproductive output dominated the population demography. Only through ploidy dissimilarities in looping rates (stasis, breakage and clonal growth) did the life cycle respond to a spatially heterogeneous environment efficiently creating a niche partition. Marginal locations were more sensitive than central locations. Related results have been obtained experimentally and numerically for widely different life cycles from the plant and animal kingdoms. Spore dispersal smoothed the effects of ploidy dissimilarities in fertility and enhanced the effects of ploidy dissimilarities looping rates. Ploidy dissimilarities in spore dispersal could also create the necessary niche partition, both over the space and time dimensions, even in spatial homogeneous environments and without the need for conditional differentiation of the ramets. Fine scale spatial variability may be the key for the prevalence of isomorphic biphasic life cycles, which has been neglected so far.

  17. Relative influence upon microwave emissivity of fine-scale stratigraphy, internal scattering, and dielectric properties

    USGS Publications Warehouse

    England, A.W.

    1976-01-01

    The microwave emissivity of relatively low-loss media such as snow, ice, frozen ground, and lunar soil is strongly influenced by fine-scale layering and by internal scattering. Radiometric data, however, are commonly interpreted using a model of emission from a homogeneous, dielectric halfspace whose emissivity derives exclusively from dielectric properties. Conclusions based upon these simple interpretations can be erroneous. Examples are presented showing that the emission from fresh or hardpacked snow over either frozen or moist soil is governed dominantly by the size distribution of ice grains in the snowpack. Similarly, the thickness of seasonally frozen soil and the concentration of rock clasts in lunar soil noticeably affect, respectively, the emissivities of northern latitude soils in winter and of the lunar regolith. Petrophysical data accumulated in support of the geophysical interpretation of microwave data must include measurements of not only dielectric properties, but also of geometric factors such as finescale layering and size distributions of grains, inclusions, and voids. ?? 1976 Birkha??user Verlag.

  18. Fine-scale genetic correlates to condition and migration in a wild cervid

    PubMed Central

    Northrup, Joseph M; Shafer, Aaron B A; Anderson, Charles R; Coltman, David W; Wittemyer, George

    2014-01-01

    The relationship between genetic variation and phenotypic traits is fundamental to the study and management of natural populations. Such relationships often are investigated by assessing correlations between phenotypic traits and heterozygosity or genetic differentiation. Using an extensive data set compiled from free-ranging mule deer (Odocoileus hemionus), we combined genetic and ecological data to (i) examine correlations between genetic differentiation and migration timing, (ii) screen for mitochondrial haplotypes associated with migration timing, and (iii) test whether nuclear heterozygosity was associated with condition. Migration was related to genetic differentiation (more closely related individuals migrated closer in time) and mitochondrial haplogroup. Body fat was related to heterozygosity at two nuclear loci (with antagonistic patterns), one of which is situated near a known fat metabolism gene in mammals. Despite being focused on a widespread panmictic species, these findings revealed a link between genetic variation and important phenotypes at a fine scale. We hypothesize that these correlations are either the result of mixing refugial lineages or differential mitochondrial haplotypes influencing energetics. The maintenance of phenotypic diversity will be critical to enable the potential tracking of changing climatic conditions, and these correlates highlight the need to consider evolutionary mechanisms in management, even in widely distributed panmictic species. PMID:25469172

  19. Fine-Scale Human Population Structure in Southern Africa Reflects Ecogeographic Boundaries.

    PubMed

    Uren, Caitlin; Kim, Minju; Martin, Alicia R; Bobo, Dean; Gignoux, Christopher R; van Helden, Paul D; Möller, Marlo; Hoal, Eileen G; Henn, Brenna M

    2016-09-01

    Recent genetic studies have established that the KhoeSan populations of southern Africa are distinct from all other African populations and have remained largely isolated during human prehistory until ∼2000 years ago. Dozens of different KhoeSan groups exist, belonging to three different language families, but very little is known about their population history. We examine new genome-wide polymorphism data and whole mitochondrial genomes for >100 South Africans from the ≠Khomani San and Nama populations of the Northern Cape, analyzed in conjunction with 19 additional southern African populations. Our analyses reveal fine-scale population structure in and around the Kalahari Desert. Surprisingly, this structure does not always correspond to linguistic or subsistence categories as previously suggested, but rather reflects the role of geographic barriers and the ecology of the greater Kalahari Basin. Regardless of subsistence strategy, the indigenous Khoe-speaking Nama pastoralists and the N|u-speaking ≠Khomani (formerly hunter-gatherers) share ancestry with other Khoe-speaking forager populations that form a rim around the Kalahari Desert. We reconstruct earlier migration patterns and estimate that the southern Kalahari populations were among the last to experience gene flow from Bantu speakers, ∼14 generations ago. We conclude that local adoption of pastoralism, at least by the Nama, appears to have been primarily a cultural process with limited genetic impact from eastern Africa.

  20. Evaluation of Species Distribution Model Algorithms For Fine-Scale Container Breeding Mosquito Risk Prediction

    PubMed Central

    Khatchikian, C.; Sangermano, F.; Kendell, D.; Livdahl, T.

    2010-01-01

    The present work evaluates the use of species distribution model (SDM) algorithms to classify high density of small container Aedes mosquitoes at a fine scale, in the Bermuda islands. Weekly ovitrap data collected by the Health Department of Bermuda (UK) for the years 2006 and 2007 were used for the models. The models evaluated included the following algorithms: Bioclim, Domain, GARP, logistic regression, and MaxEnt. Models were evaluated according to performance and robustness. The area Receiver Operating Characteristic (ROC) curve was used to evaluate each model’s performance, and robustness was assessed considering the spatial correlation between classification risks for the two datasets. Relative to the other algorithms, logistic regression was the best model for classifying high risk areas, and the maximum entropy approach (MaxEnt) presented the second best performance. We report the importance of covariables for these two models, and discuss the utility of SDMs for vector control efforts and the potential for the development of scripts that automate the task of creating risk assessment maps. PMID:21198711

  1. Passive acoustic methods for fine-scale tracking of harbour porpoises in tidal rapids.

    PubMed

    Macaulay, Jamie; Gordon, Jonathan; Gillespie, Douglas; Malinka, Chloë; Northridge, Simon

    2017-02-01

    The growing interest in generating electrical power from tidal currents using tidal turbine generators raises a number of environmental concerns, including the risk that marine mammals might be injured or killed through collision with rotating turbine blades. To understand this risk, information on how marine mammals use tidal rapid habitats and in particular, their underwater movements and dive behaviour is required. Porpoises, which are the most abundant small cetacean at most European tidal sites, are difficult animals to tag, and the limited size of tidal habitats means that any telemetered animal would be likely to spend only a small proportion of time within them. Here, an alternative approach is explored, whereby passive acoustic monitoring (PAM) is used to obtain fine scale geo-referenced tracks of harbour porpoises in tidal rapid areas. Large aperture hydrophone arrays are required to obtain accurate locations of animals from PAM data and automated algorithms are necessary to process the large quantities of acoustic data collected on such systems during a typical survey. Methods to automate localisation, including a method to match porpoise detections on different hydrophones and separate different vocalising animals, and an assessment of the localisation accuracy of the large aperture hydrophone array are presented.

  2. Does temperature affect the accuracy of vented pressure transducer in fine-scale water level measurement?

    NASA Astrophysics Data System (ADS)

    Liu, Z.; Higgins, C. W.

    2015-03-01

    Submersible pressure transducers have been utilized for collecting water level data since the early 1960s. Together with a digital data logger, it is a convenient way to record water level fluctuations for long-term monitoring. Despite the wide use of pressure transducers for water level monitoring, little has been reported regarding their accuracy and performance under field conditions. The effects of temperature fluctuations on the output of vented pressure transducers were considered in this study. The pressure transducers were tested under both laboratory and field conditions. The results of this study indicate that temperature fluctuation has a strong effect on the transducer output. Rapid changes in temperature introduce noise and fluctuations in the water level readings under a constant hydraulic head while the absolute temperature is also related to sensor errors. The former is attributed to venting and the latter is attributed to temperature compensation effects in the strain gauges. Individual pressure transducers responded differently to the thermal fluctuations in the same testing environment. In the field of surface hydrology, especially when monitoring fine-scale water level fluctuations, ignoring or failing to compensate for the temperature effect can introduce considerable error into pressure transducer readings. It is recommended that a performance test for the pressure transducer is conducted before field deployment.

  3. Fine-scale urbanization affects Odonata species diversity in ponds of a megacity (Paris, France)

    NASA Astrophysics Data System (ADS)

    Jeanmougin, Martin; Leprieur, Fabien; Loïs, Grégoire; Clergeau, Philippe

    2014-08-01

    Current developments in urban ecology include very few studies focused on pond ecosystems, though ponds are recognized as biodiversity hotspots. Using Odonata as an indicator model, we explored changes in species composition in ponds localized along an urban gradient of a megacity (Paris, France). We then assessed the relative importance of local- and landscape-scale variables in shaping Odonata α-diversity patterns using a model-averaging approach. Analyses were performed for adult (A) and adult plus exuviae (AE) census data. At 26 ponds, we recorded 657 adults and 815 exuviae belonging to 17 Odonata species. The results showed that the Odonata species assemblage composition was not determined by pond localization along the urban gradient. Similarly, pond characteristics were found to be similar among urban, suburban and periurban ponds. The analyses of AE census data revealed that fine-scale urbanization (i.e., increased density of buildings surrounding ponds) negatively affects Odonata α-diversity. In contrast, pond localization along the urban gradient weakly explained the α-diversity patterns. Several local-scale variables, such as the coverage of submerged macrophytes, were found to be significant drivers of Odonata α-diversity. Together, these results show that the degree of urbanization around ponds must be considered instead of pond localization along the urban gradient when assessing the potential impacts of urbanization on Odonata species diversity. This work also indicates the importance of exuviae sampling in understanding the response of Odonata to urbanization.

  4. Dynamics of land change in India: a fine-scale spatial analysis

    NASA Astrophysics Data System (ADS)

    Meiyappan, P.; Roy, P. S.; Sharma, Y.; Jain, A. K.; Ramachandran, R.; Joshi, P. K.

    2015-12-01

    Land is scarce in India: India occupies 2.4% of worlds land area, but supports over 1/6th of worlds human and livestock population. This high population to land ratio, combined with socioeconomic development and increasing consumption has placed tremendous pressure on India's land resources for food, feed, and fuel. In this talk, we present contemporary (1985 to 2005) spatial estimates of land change in India using national-level analysis of Landsat imageries. Further, we investigate the causes of the spatial patterns of change using two complementary lines of evidence. First, we use statistical models estimated at macro-scale to understand the spatial relationships between land change patterns and their concomitant drivers. This analysis using our newly compiled extensive socioeconomic database at village level (~630,000 units), is 100x higher in spatial resolution compared to existing datasets, and covers over 200 variables. The detailed socioeconomic data enabled the fine-scale spatial analysis with Landsat data. Second, we synthesized information from over 130 survey based case studies on land use drivers in India to complement our macro-scale analysis. The case studies are especially useful to identify unobserved variables (e.g. farmer's attitude towards risk). Ours is the most detailed analysis of contemporary land change in India, both in terms of national extent, and the use of detailed spatial information on land change, socioeconomic factors, and synthesis of case studies.

  5. Unexpected fine-scale population structure in a broadcast-spawning Antarctic marine mollusc.

    PubMed

    Hoffman, Joseph I; Clarke, Andy; Clark, Melody S; Fretwell, Peter; Peck, Lloyd S

    2012-01-01

    Several recent empirical studies have challenged the prevailing dogma that broadcast-spawning species exhibit little or no population genetic structure by documenting genetic discontinuities associated with large-scale oceanographic features. However, relatively few studies have explored patterns of genetic differentiation over fine spatial scales. Consequently, we used a hierarchical sampling design to investigate the basis of a weak but significant genetic difference previously reported between Antarctic limpets (Nacella concinna) sampled from Adelaide and Galindez Islands near the base of the Antarctic Peninsula. Three sites within Ryder Bay, Adelaide Island (Rothera Point, Leonie and Anchorage Islands) were each sub-sampled three times, yielding a total of 405 samples that were genotyped at 155 informative Amplified Fragment Length Polymorphisms (AFLPs). Contrary to our initial expectations, limpets from Anchorage Island were found to be subtly, but significantly distinct from those sampled from the other sites. This suggests that local processes may play an important role in generating fine-scale population structure even in species with excellent dispersal capabilities, and highlights the importance of sampling at multiple spatial scales in population genetic surveys.

  6. Inter-annual maintenance of the fine-scale genetic structure in a biennial plant

    PubMed Central

    Valverde, Javier; Gómez, José María; García, Cristina; Sharbel, Timothy F.; Jiménez, María Noelia; Perfectti, Francisco

    2016-01-01

    Within plant populations, space-restricted gene movement, together with environmental heterogeneity, can result in a spatial variation in gene frequencies. In biennial plants, inter-annual flowering migrants can homogenize gene frequencies between consecutive cohorts. However, the actual impact of these migrants on spatial genetic variation remains unexplored. Here, we used 10 nuclear microsatellite and one plastid genetic marker to characterize the spatial genetic structure within two consecutive cohorts in a population of the biennial plant Erysimum mediohispanicum (Brassicaceae). We explored the maintenance of this structure between consecutive flowering cohorts at different levels of complexity, and investigated landscape effects on gene flow. We found that cohorts were not genetically differentiated and showed a spatial genetic structure defined by a negative genetic-spatial correlation at fine scale that varied in intensity with compass directions. This spatial genetic structure was maintained when comparing plants from different cohorts. Additionally, genotypes were consistently associated with environmental factors such as light availability and soil composition, but to a lesser extent compared with the spatial autocorrelation. We conclude that inter-annual migrants, in combination with limited seed dispersal and environmental heterogeneity, play a major role in shaping and maintaining the spatial genetic structure among cohorts in this biennial plant. PMID:27883087

  7. Fine-scale spatial genetic dynamics over the life cycle of the tropical tree Prunus africana

    PubMed Central

    Berens, D G; Braun, C; González-Martínez, S C; Griebeler, E M; Nathan, R; Böhning-Gaese, K

    2014-01-01

    Studying fine-scale spatial genetic patterns across life stages is a powerful approach to identify ecological processes acting within tree populations. We investigated spatial genetic dynamics across five life stages in the insect-pollinated and vertebrate-dispersed tropical tree Prunus africana in Kakamega Forest, Kenya. Using six highly polymorphic microsatellite loci, we assessed genetic diversity and spatial genetic structure (SGS) from seed rain and seedlings, and different sapling stages to adult trees. We found significant SGS in all stages, potentially caused by limited seed dispersal and high recruitment rates in areas with high light availability. SGS decreased from seed and early seedling stages to older juvenile stages. Interestingly, SGS was stronger in adults than in late juveniles. The initial decrease in SGS was probably driven by both random and non-random thinning of offspring clusters during recruitment. Intergenerational variation in SGS could have been driven by variation in gene flow processes, overlapping generations in the adult stage or local selection. Our study shows that complex sequential processes during recruitment contribute to SGS of tree populations. PMID:24849171

  8. Fine-scale genetic differentiation of a temperate herb: relevance of local environments and demographic change

    PubMed Central

    Sato, Yasuhiro; Kudoh, Hiroshi

    2014-01-01

    The genetic structure of a plant species is shaped by environmental adaptation and demographic factors, but their relative contributions are still unknown. To examine the environment- or geography-related differentiation, we quantified genetic variation among 41 populations of a temperate herb, Arabidopsis halleri subsp. gemmifera (Brassicaceae). We analysed 19 microsatellite loci, which showed a significant population differentiation and a moderate within-population genetic diversity (global Gst = 0.42 and Hs = 0.19). Our structure analysis and phylogenetic network did not detect more than two genetic groups across the Japanese mainland but found fine-scale genetic differentiations and admixed patterns around the central area. Across the Japanese mainland, we found significant evidence for isolation-by-distance but not for isolation-by-environments. However, at least within the central area, the magnitude of genetic differentiation tended to increase with microhabitat dissimilarity under light conditions and water availability. Furthermore, most populations have been estimated to experience a recent decline in the effective population size, indicating a possibility of bottleneck effects on the pattern of genetic variation. These findings highlight a potential influence of the microhabitat conditions and demographic changes on the local-scale genetic differentiation among natural plant populations. PMID:25387749

  9. Fine-scale behavioural differences distinguish resource use by ecomorphs in a closed ecosystem

    PubMed Central

    Hawley, Kate L.; Rosten, Carolyn M.; Christensen, Guttorm; Lucas, Martyn C.

    2016-01-01

    Temporal differences in habitat use and foraging specialisms between ecomorphs represent aspects of behavioural phenotype that are poorly understood with regard to the origin and maintenance of ecological diversity. We tested the role of behaviour in resource use divergence of two Arctic charr (Salvelinus alpinus) phenotypes, a slim, putatively pelagic-dwelling morph and a robust, putatively littoral-dwelling generalist morph, over an annual cycle, using biotelemetry and stable isotopes. Pelagic morph charr exhibited significantly greater δC13 depletion, concordant with increased zooplanktivory, than for the Littoral morph. Although three-dimensional space-use of the morphs strongly overlapped, on average, the Littoral morph used that habitat 19.3% more than the Pelagic morph. Pelagic morph fish were significantly more active, further from the lake bed and at greater depth than Littoral fish (annual means respectively, Pelagic, 0.069BLs−1, 8.21 m and 14.11 m; Littoral, 0.047BLs−1, 5.87 m and 10.47 m). Patterns of habitat use differed between ecomorphs at key times, such as during autumn and at ice break, likely related to spawning and resumption of intensive foraging respectively. Extensive space-use overlap, but fine-scale differences in habitat use between charr ecomorphs, suggests the importance of competition for generating and maintaining polymorphism, and its potential for promoting reproductive isolation and evolution in sympatry. PMID:27098197

  10. Reduced fine-scale spatial genetic structure in grazed populations of Dianthus carthusianorum.

    PubMed

    Rico, Y; Wagner, H H

    2016-11-01

    Strong spatial genetic structure in plant populations can increase homozygosity, reducing genetic diversity and adaptive potential. The strength of spatial genetic structure largely depends on rates of seed dispersal and pollen flow. Seeds without dispersal adaptations are likely to be dispersed over short distances within the vicinity of the mother plant, resulting in spatial clustering of related genotypes (fine-scale spatial genetic structure, hereafter spatial genetic structure (SGS)). However, primary seed dispersal by zoochory can promote effective dispersal, increasing the mixing of seeds and influencing SGS within plant populations. In this study, we investigated the effects of seed dispersal by rotational sheep grazing on the strength of SGS and genetic diversity using 11 nuclear microsatellites for 49 populations of the calcareous grassland forb Dianthus carthusianorum. Populations connected by rotational sheep grazing showed significantly weaker SGS and higher genetic diversity than populations in ungrazed grasslands. Independent of grazing treatment, small populations showed significantly stronger SGS and lower genetic diversity than larger populations, likely due to genetic drift. A lack of significant differences in the strength of SGS and genetic diversity between populations that were recently colonized and pre-existing populations suggested that populations colonized after the reintroduction of rotational sheep grazing were likely founded by colonists from diverse source populations. We conclude that dispersal by rotational sheep grazing has the potential to considerably reduce SGS within D. carthusianorum populations. Our study highlights the effectiveness of landscape management by rotational sheep grazing to importantly reduce genetic structure at local scales within restored plant populations.

  11. Mapping to Support Fine Scale Epidemiological Cholera Investigations: A Case Study of Spatial Video in Haiti

    PubMed Central

    Curtis, Andrew; Blackburn, Jason K.; Smiley, Sarah L.; Yen, Minmin; Camilli, Andrew; Alam, Meer Taifur; Ali, Afsar; Morris, J. Glenn

    2016-01-01

    The cartographic challenge in many developing world environments suffering a high disease burden is a lack of granular environmental covariates suitable for modeling disease outcomes. As a result, epidemiological questions, such as how disease diffuses at intra urban scales are extremely difficult to answer. This paper presents a novel geospatial methodology, spatial video, which can be used to collect and map environmental covariates, while also supporting field epidemiology. An example of epidemic cholera in a coastal town of Haiti is used to illustrate the potential of this new method. Water risks from a 2012 spatial video collection are used to guide a 2014 survey, which concurrently included the collection of water samples, two of which resulted in positive lab results “of interest” (bacteriophage specific for clinical cholera strains) to the current cholera situation. By overlaying sample sites on 2012 water risk maps, a further fifteen proposed water sample locations are suggested. These resulted in a third spatial video survey and an additional “of interest” positive water sample. A potential spatial connection between the “of interest” water samples is suggested. The paper concludes with how spatial video can be an integral part of future fine-scale epidemiological investigations for different pathogens. PMID:26848672

  12. Fine-Scale Genetic Structure Arises during Range Expansion of an Invasive Gecko

    PubMed Central

    Short, Kristen Harfmann; Petren, Kenneth

    2011-01-01

    Processes of range expansion are increasingly important in light of current concerns about invasive species and range shifts due to climate change. Theoretical studies suggest that genetic structuring may occur during range expansion. Ephemeral genetic structure can have important evolutionary implications, such as propagating genetic changes along the wave front of expansion, yet few studies have shown evidence of such structure. We tested the hypothesis that genetic structure arises during range expansion in Hemidactylus mabouia, a nocturnal African gecko recently introduced to Florida, USA. Twelve highly variable microsatellite loci were used to screen 418 individuals collected from 43 locations from four sampling sites across Florida, representing a gradient from earlier (∼1990s) to very recent colonization. We found earlier colonized locations had little detectable genetic structure and higher allelic richness than more recently colonized locations. Genetic structuring was pronounced among locations at spatial scales of tens to hundreds of meters near the leading edge of range expansion. Despite the rapid pace of range expansion in this introduced gecko, dispersal is limited among many suitable habitat patches. Fine-scale genetic structure is likely the result of founder effects during colonization of suitable habitat patches. It may be obscured over time and by scale-dependent modes of dispersal. Further studies are needed to determine if such genetic structure affects adaptation and trait evolution in range expansions and range shifts. PMID:22053186

  13. Population genomic footprints of fine-scale differentiation between habitats in Mediterranean blue tits.

    PubMed

    Szulkin, M; Gagnaire, P-A; Bierne, N; Charmantier, A

    2016-01-01

    Linking population genetic variation to the spatial heterogeneity of the environment is of fundamental interest to evolutionary biology and ecology, in particular when phenotypic differences between populations are observed at biologically small spatial scales. Here, we applied restriction-site associated DNA sequencing (RAD-Seq) to test whether phenotypically differentiated populations of wild blue tits (Cyanistes caeruleus) breeding in a highly heterogeneous environment exhibit genetic structure related to habitat type. Using 12 106 SNPs in 197 individuals from deciduous and evergreen oak woodlands, we applied complementary population genomic analyses, which revealed that genetic variation is influenced by both geographical distance and habitat type. A fine-scale genetic differentiation supported by genome- and transcriptome-wide analyses was found within Corsica, between two adjacent habitats where blue tits exhibit marked differences in breeding time while nesting < 6 km apart. Using redundancy analysis (RDA), we show that genomic variation remains associated with habitat type when controlling for spatial and temporal effects. Finally, our results suggest that the observed patterns of genomic differentiation were not driven by a small proportion of highly differentiated loci, but rather emerged through a process such as habitat choice, which reduces gene flow between habitats across the entire genome. The pattern of genomic isolation-by-environment closely matches differentiation observed at the phenotypic level, thereby offering significant potential for future inference of phenotype-genotype associations in a heterogeneous environment.

  14. Fine scale endemism on coral reefs: archipelagic differentiation in turbinid gastropods.

    PubMed

    Meyer, Christopher P; Geller, Jonathan B; Paulay, Gustav

    2005-01-01

    The perceived wide geographic range of organisms in the sea, facilitated by ready dispersal of waterborne dispersal stages, is a challenge for hypotheses of marine speciation but a boon to efforts of marine conservation. Wide species ranges are especially striking in the reef-rich Indo-west Pacific, the largest and most diverse marine biogeographic region, extending across half the planet. The insular marine biota of the tropical Pacific is characterized by wide-ranging species and provides the most striking examples of long distance dispersal, with endemism largely confined to the most remote island groups. Here we show that the gastropod Astralium "rhodostomum" has developed endemic clades on almost every Pacific archipelago sampled, a pattern unprecedented in marine biogeography, and reminiscent of the terrestrial biota of oceanic islands. Mitochondrial DNA sequences indicate that this species-complex is comprised of at least 30 geographically isolated clades, separated by as little as 180 km. Evidence suggests that such fine scale endemism and high diversity is not exceptional, but likely characterizes a substantial fraction of the reef biota. These results imply that (1) marine speciation can regularly occur over much finer spatial scales than generally accepted, (2) the diversity of coral reefs is even higher than suggested by morphology-based estimates, and (3) conservation efforts need to focus at the archipelagic level in the sea as on land.

  15. Fine-Scale Zonal Flow Suppression of Electron Temperature Gradient Turbulence

    SciTech Connect

    Parker, S. E.; Kohut, J. J.; Chen, Y.; Lin, Z.; Hinton, F. L.; Lee, W. W.

    2006-11-30

    It is found in collisionless Electron Temperature Gradient (ETG) turbulence simulations that, while zonal flows are weak at early times, the zonal flows continue to grow algebraically (proportional to time). These fine-scale zonal flows have a radial wave number such that kr{rho}i > 1 and kr{rho}e < 1. Eventually, the zonal flows grow to a level that suppresses the turbulence due to ExB shearing. The final electron energy flux is found to be relatively low. These conclusions are based on particle convergence studies with adiabatic ion electrostatic flux-tube gyrokinetic {delta}f particle simulations run for long times. The Rosenbluth-Hinton random walk mechanism is given as an explanation for the long time build up of the zonal flow in ETG turbulence and it is shown that the generation is (k perpendicular {rho}e)2 smaller than for isomorphic Ion Temperature Gradient (ITG) problem. This mechanism for zonal flow generation here is different than the modulational instability mechanism for ITG turbulence. These results are important because previous results indicated zonal flows were unimportant for ETG turbulence. Weak collisional damping of the zonal flow is also shown to be a n important effect.

  16. Fine scale mapping of the structure and composition of the Elkhorn Slough (California, USA) tidal plume

    NASA Astrophysics Data System (ADS)

    Fischer, Andrew M.; Ryan, John P.; Rienecker, Erich V.

    2017-01-01

    Fine scale mapping of the structure and composition of a tidal ebb plume from a highly modified coastal lagoon (Elkhorn Slough, California, USA) was conducted by combining in situ, observational data sets from surface underway mapping, autonomous underwater vehicle (AUV) profiles, drifter tracking and the analysis of plume structure indices. The results reveal a 6-m-deep, jet-like, sediment laden plume extending one km offshore at low tide, which becomes entrained in the prevailing nearshore circulation. The plume that exits the slough is significantly different from the water that enters the slough. The rapidly evolving discharge plume is associated with elevated and highly correlated (r = 0.93) concentrations of dissolved organic matter and nitrate. While dissolved constituents remain in the shallow plume and are transported northward with the prevailing current, sediment may settle quickly through the water column and can be transported southwestward with the littoral currents. This study illustrates the applications of AUVs, when coupled with additional datasets, for generating higher resolution observational snapshots of dynamic and ephemeral tidal plumes. The results provide unique perspective on small-scale dynamics of an estuarine plume and its influence on coastal ecology.

  17. Fine-scale patterns of population stratification confound rare variant association tests.

    PubMed

    O'Connor, Timothy D; Kiezun, Adam; Bamshad, Michael; Rich, Stephen S; Smith, Joshua D; Turner, Emily; Leal, Suzanne M; Akey, Joshua M

    2013-01-01

    Advances in next-generation sequencing technology have enabled systematic exploration of the contribution of rare variation to Mendelian and complex diseases. Although it is well known that population stratification can generate spurious associations with common alleles, its impact on rare variant association methods remains poorly understood. Here, we performed exhaustive coalescent simulations with demographic parameters calibrated from exome sequence data to evaluate the performance of nine rare variant association methods in the presence of fine-scale population structure. We find that all methods have an inflated spurious association rate for parameter values that are consistent with levels of differentiation typical of European populations. For example, at a nominal significance level of 5%, some test statistics have a spurious association rate as high as 40%. Finally, we empirically assess the impact of population stratification in a large data set of 4,298 European American exomes. Our results have important implications for the design, analysis, and interpretation of rare variant genome-wide association studies.

  18. Genomic valorization of the fine scale classification of small millet landraces in southern India.

    PubMed

    Newmaster, Steven G; Ragupathy, Subramanyam; Dhivya, Shanmughanandhan; Jijo, Chitilappilly Joseph; Sathishkumar, Ramalingam; Patel, Kirit

    2013-02-01

    Our research seeks to investigate genomic diversity of landraces of millet, addressing a key uncertainty that will provide a framework for (i) a DNA barcode method that could be used for fast, sensitive, and accurate identification of millet landraces, and (ii) millet landrace conservation including biocultural diversity. We found considerable intraspecific variation among 15 landraces representing six species of small millets using nuclear regions (ITS, ITS1, and ITS2); there was no variation in plastid regions (rbcL, matK, and trnH-psbA). An efficacious ITS2 DNA barcode was used to make 100% accurate landrace assignments for 150 blind samples representing 15 landraces. Our research revealed that genomic variation is aligned with a fine-scale classification of landraces using traditional knowledge (TK) of local farmers. The landrace classification was highly correlated with traits (morphological, agricultural, and cultural utility) associated with considerable factors such as yield, drought tolerance, growing season, medicinal properties, and nutrition. This could provide a DNA-based model for conservation of genetic diversity and the associated bicultural diversity (TK) of millet landraces, which has sustained marginal farming communities in harsh environments for many generations.

  19. Limited Dispersal and Significant Fine - Scale Genetic Structure in a Tropical Montane Parrot Species

    PubMed Central

    Klauke, Nadine; Schaefer, H. Martin; Bauer, Michael; Segelbacher, Gernot

    2016-01-01

    Tropical montane ecosystems are biodiversity hotspots harbouring many endemics that are confined to specific habitat types within narrow altitudinal ranges. While deforestation put these ecosystems under threat, we still lack knowledge about how heterogeneous environments like the montane tropics promote population connectivity and persistence. We investigated the fine-scale genetic structure of the two largest subpopulations of the endangered El Oro parakeet (Pyrrhura orcesi) endemic to the Ecuadorian Andes. Specifically, we assessed the genetic divergence between three sites separated by small geographic distances but characterized by a heterogeneous habitat structure. Although geographical distances between sites are small (3–17 km), we found genetic differentiation between all sites. Even though dispersal capacity is generally high in parrots, our findings indicate that dispersal is limited even on this small geographic scale. Individual genotype assignment revealed similar genetic divergence across a valley (~ 3 km distance) compared to a continuous mountain range (~ 13 km distance). Our findings suggest that geographic barriers promote genetic divergence even on small spatial scales in this endangered endemic species. These results may have important implications for many other threatened and endemic species, particularly given the upslope shift of species predicted from climate change. PMID:28033364

  20. Fine-scale population structure in a deep-sea teleost (orange roughy, Hoplostethus atlanticus)

    NASA Astrophysics Data System (ADS)

    Carlsson, Jens; Shephard, Samuel; Coughlan, James; Trueman, Clive N.; Rogan, Emer; Cross, Tom F.

    2011-06-01

    Microsatellite and otolith chemistry variability were analysed to assess fine scale genetic structure in the deep-sea teleost orange roughy ( Hoplostethus atlanticus). The Porcupine Bank located on the continental shelf west of Ireland, comprises a complex system of mounds and flat areas that are broken up by canyons. Orange roughy form spawning aggregations on mounds and flat areas, and were heavily fished until the resource was depleted. By analysing adults in spawning condition and juvenile orange roughy from six mounds and one flat area, shallow but significant genetic population structure was evident ( FST=0.0031, Dest across loci=0.0306 and G-test). Most of the structure was accounted for by inclusion of a sample from the flats (six of ten significant pairwise FST estimates and G-tests, and five of the highest Dest estimates included the flat sample). While the flat sample contributed most to the genetic structure, there was still significant (albeit weaker) structure among mound samples. The observed structure was supported by otolith analyses. Fish caught as late juveniles in either the flat or mound areas showed consistent differences in chemistry at the otolith core throughout the initial 10 years of growth, which could indicate site fidelity. We hypothesise that seafloor topographic structures (mounds and flats) may provide discrete spawning areas for orange roughy and that the limited gene flow between these spawning areas is insufficient to counteract genetic drift.

  1. A nanobuffer reporter library for fine-scale imaging and perturbation of endocytic organelles

    PubMed Central

    Wang, Chensu; Wang, Yiguang; Li, Yang; Bodemann, Brian; Zhao, Tian; Ma, Xinpeng; Huang, Gang; Hu, Zeping; DeBerardinis, Ralph J.; White, Michael A.; Gao, Jinming

    2015-01-01

    Endosomes, lysosomes and related catabolic organelles are a dynamic continuum of vacuolar structures that impact a number of cell physiological processes such as protein/lipid metabolism, nutrient sensing and cell survival. Here we develop a library of ultra-pH-sensitive fluorescent nanoparticles with chemical properties that allow fine-scale, multiplexed, spatio-temporal perturbation and quantification of catabolic organelle maturation at single organelle resolution to support quantitative investigation of these processes in living cells. Deployment in cells allows quantification of the proton accumulation rate in endosomes; illumination of previously unrecognized regulatory mechanisms coupling pH transitions to endosomal coat protein exchange; discovery of distinct pH thresholds required for mTORC1 activation by free amino acids versus proteins; broad-scale characterization of the consequence of endosomal pH transitions on cellular metabolomic profiles; and functionalization of a context-specific metabolic vulnerability in lung cancer cells. Together, these biological applications indicate the robustness and adaptability of this nanotechnology-enabled ‘detection and perturbation' strategy. PMID:26437053

  2. Population density and sex do not influence fine-scale natal dispersal in roe deer.

    PubMed

    Gaillard, J-M; Hewison, A J M; Kjellander, P; Pettorelli, N; Bonenfant, C; Van Moorter, B; Liberg, O; Andren, H; Van Laere, G; Klein, F; Angibault, J-M; Coulon, A; Vanpé, C

    2008-09-07

    It is commonly assumed that the propensity to disperse and the dispersal distance of mammals should increase with increasing density and be greater among males than among females. However, most empirical evidence, especially on large mammals, has focused on highly polygynous and dimorphic species displaying female-defence mating tactics. We tested these predictions on roe deer, a weakly polygynous species of large herbivore exhibiting a resource-defence mating tactic at a fine spatial scale. Using three long-term studies of populations that were subject to the experimental manipulation of size, we did not find any support for either prediction, whether in terms of dispersal probability or dispersal distance. Our findings of similar dispersal patterns in both sexes of roe deer suggest that the underlying cause of natal dispersal is not related to inbreeding avoidance in this species. The absence of positive density dependence in fine-scale dispersal behaviour suggests that roe deer natal dispersal is a pre-saturation process that is shaped by heterogeneities in habitat quality rather than by density per se.

  3. Fabrication of 3D fine scale PZT components by ink-jet prototyping process

    NASA Astrophysics Data System (ADS)

    Noguera, R.; Dossou-Yovo, C.; Lejeune, M.; Chartier, T.

    2005-09-01

    Different investigations have been carried out to optimize an ink-jet printing technique, devoted to the fabrication of 3D fine scale PZT parts, by adjustment of the fluid properties of the ceramic suspensions and by controlling the ejection and impact phenomena. A 10 vol% PZT loaded suspension characterized by a Newtonian behavior, corresponding to a viscosity of 10mPa.s and to a ratio Re/We1/2 of 5.98 has been selected. The ejection and impact phenomena strongly depend on the driving parameters of the printing head, in particular the formation of the droplet, with satellite or not, as well as its velocity and volume which are function of the pulse amplitude. Moreover, the conditions of ejection (droplet velocity and volume) control the characteristics of the deposit (definition, spreading, thickness uniformity). Sintered PZT pillar array has been achieved by ink-jet printing with a definition equal to 50μm. These structures could be very useful to improve the performances of 1-3 ceramic polymer composites for imaging probes or more generally for ultrasonic transducers and also of micro-deformable mirrors for optical adaptive systems.

  4. Mapping to Support Fine Scale Epidemiological Cholera Investigations: A Case Study of Spatial Video in Haiti.

    PubMed

    Curtis, Andrew; Blackburn, Jason K; Smiley, Sarah L; Yen, Minmin; Camilli, Andrew; Alam, Meer Taifur; Ali, Afsar; Morris, J Glenn

    2016-02-03

    The cartographic challenge in many developing world environments suffering a high disease burden is a lack of granular environmental covariates suitable for modeling disease outcomes. As a result, epidemiological questions, such as how disease diffuses at intra urban scales are extremely difficult to answer. This paper presents a novel geospatial methodology, spatial video, which can be used to collect and map environmental covariates, while also supporting field epidemiology. An example of epidemic cholera in a coastal town of Haiti is used to illustrate the potential of this new method. Water risks from a 2012 spatial video collection are used to guide a 2014 survey, which concurrently included the collection of water samples, two of which resulted in positive lab results "of interest" (bacteriophage specific for clinical cholera strains) to the current cholera situation. By overlaying sample sites on 2012 water risk maps, a further fifteen proposed water sample locations are suggested. These resulted in a third spatial video survey and an additional "of interest" positive water sample. A potential spatial connection between the "of interest" water samples is suggested. The paper concludes with how spatial video can be an integral part of future fine-scale epidemiological investigations for different pathogens.

  5. Fine-scale genetic structure of grape phylloxera from the roots and leaves of Vitis.

    PubMed

    Corrie, A M; Hoffmann, A A

    2004-02-01

    Patterns of variation at microsatellite loci suggest that root populations of the pest grape phylloxera (Daktulosphaira vitifoliae) are largely parthenogenetic in Australian vineyards. To investigate reproduction in leaf galling phylloxera and the association between these individuals and phylloxera on roots, we examined in detail genetic variation in phylloxera from a vineyard block. Some genotypes found on leaf galls within this block were not present on roots, whereas others spanned both zones. There was no evidence that genotypes on roots were the product of sexual reproduction in leaf galls. mtDNA variation was not associated with the location of the phylloxera clones. The spatial distribution of genotypes within a root population was further investigated by intensively sampling phylloxera from another vineyard block. Join-count spatial autocorrelation statistics were used to explore fine-scale spatial structure. Clones were nonrandomly distributed within the block and there was evidence that the distribution of clones followed rows. These findings suggest firstly that there is limited dispersal of root and leaf feeding phylloxera, and secondly that factors, other than vine host, are likely to be important and contribute to clonal structure within populations.

  6. Fine-scale diversity and distribution of ectomycorrhizal fungal mycelium in a Scots pine forest.

    PubMed

    Anderson, Ian C; Genney, David R; Alexander, Ian J

    2014-03-01

    Ectomycorrhizal (ECM) mycelium is a key component of the ectomycorrhizal symbiosis, yet we know little regarding the fine-scale diversity and distribution of mycelium in ECM fungal communities. We collected four 20 × 20 × 2-cm(3) (800-cm(3)) slices of Scots pine (Pinus sylvestris) forest soil and divided each into 100 2 × 2 × 2-cm(3) (8-cm(3)) cubes. The presence of mycelium of ECM fungi was determined using an internal transcribed spacer (ITS) database terminal restriction fragment length polymorphism (T-RFLP) approach. As expected, many more ECM fungi were detected as mycelium than as ectomycorrhizas in a cube or slice. More surprisingly, up to one-quarter of the 43 species previously detected as ectomycorrhizas over an area of 400 m(2) could be detected in a single 8-cm(3) cube, and up to three-quarters in a single 800-cm(3) slice. ECM mycelium frequency decreased markedly with depth and there were distinct 'hotspots' of mycelium in the moss/F1 layer. Our data demonstrate a high diversity of ECM mycelium in a small (8-cm(3) ) volume of substrate, and indicate that the spatial scale at which ECM species are distributed as mycelium may be very different from the spatial scale at which they are distributed as tips.

  7. Population density and sex do not influence fine-scale natal dispersal in roe deer

    PubMed Central

    Gaillard, J.-M; Hewison, A.J.M; Kjellander, P; Pettorelli, N; Bonenfant, C; Van Moorter, B; Liberg, O; Andren, H; Van Laere, G; Klein, F; Angibault, J.-M; Coulon, A; Vanpé, C

    2008-01-01

    It is commonly assumed that the propensity to disperse and the dispersal distance of mammals should increase with increasing density and be greater among males than among females. However, most empirical evidence, especially on large mammals, has focused on highly polygynous and dimorphic species displaying female-defence mating tactics. We tested these predictions on roe deer, a weakly polygynous species of large herbivore exhibiting a resource-defence mating tactic at a fine spatial scale. Using three long-term studies of populations that were subject to the experimental manipulation of size, we did not find any support for either prediction, whether in terms of dispersal probability or dispersal distance. Our findings of similar dispersal patterns in both sexes of roe deer suggest that the underlying cause of natal dispersal is not related to inbreeding avoidance in this species. The absence of positive density dependence in fine-scale dispersal behaviour suggests that roe deer natal dispersal is a pre-saturation process that is shaped by heterogeneities in habitat quality rather than by density per se. PMID:18505718

  8. Ultra-Fine Scale Spatially-Integrated Mapping of Habitat and Occupancy Using Structure-From-Motion

    PubMed Central

    McDowall, Philip; Lynch, Heather J.

    2017-01-01

    Organisms respond to and often simultaneously modify their environment. While these interactions are apparent at the landscape extent, the driving mechanisms often occur at very fine spatial scales. Structure-from-Motion (SfM), a computer vision technique, allows the simultaneous mapping of organisms and fine scale habitat, and will greatly improve our understanding of habitat suitability, ecophysiology, and the bi-directional relationship between geomorphology and habitat use. SfM can be used to create high-resolution (centimeter-scale) three-dimensional (3D) habitat models at low cost. These models can capture the abiotic conditions formed by terrain and simultaneously record the position of individual organisms within that terrain. While coloniality is common in seabird species, we have a poor understanding of the extent to which dense breeding aggregations are driven by fine-scale active aggregation or limited suitable habitat. We demonstrate the use of SfM for fine-scale habitat suitability by reconstructing the locations of nests in a gentoo penguin colony and fitting models that explicitly account for conspecific attraction. The resulting digital elevation models (DEMs) are used as covariates in an inhomogeneous hybrid point process model. We find that gentoo penguin nest site selection is a function of the topography of the landscape, but that nests are far more aggregated than would be expected based on terrain alone, suggesting a strong role of behavioral aggregation in driving coloniality in this species. This integrated mapping of organisms and fine scale habitat will greatly improve our understanding of fine-scale habitat suitability, ecophysiology, and the complex bi-directional relationship between geomorphology and habitat use. PMID:28076351

  9. Ultra-Fine Scale Spatially-Integrated Mapping of Habitat and Occupancy Using Structure-From-Motion.

    PubMed

    McDowall, Philip; Lynch, Heather J

    2017-01-01

    Organisms respond to and often simultaneously modify their environment. While these interactions are apparent at the landscape extent, the driving mechanisms often occur at very fine spatial scales. Structure-from-Motion (SfM), a computer vision technique, allows the simultaneous mapping of organisms and fine scale habitat, and will greatly improve our understanding of habitat suitability, ecophysiology, and the bi-directional relationship between geomorphology and habitat use. SfM can be used to create high-resolution (centimeter-scale) three-dimensional (3D) habitat models at low cost. These models can capture the abiotic conditions formed by terrain and simultaneously record the position of individual organisms within that terrain. While coloniality is common in seabird species, we have a poor understanding of the extent to which dense breeding aggregations are driven by fine-scale active aggregation or limited suitable habitat. We demonstrate the use of SfM for fine-scale habitat suitability by reconstructing the locations of nests in a gentoo penguin colony and fitting models that explicitly account for conspecific attraction. The resulting digital elevation models (DEMs) are used as covariates in an inhomogeneous hybrid point process model. We find that gentoo penguin nest site selection is a function of the topography of the landscape, but that nests are far more aggregated than would be expected based on terrain alone, suggesting a strong role of behavioral aggregation in driving coloniality in this species. This integrated mapping of organisms and fine scale habitat will greatly improve our understanding of fine-scale habitat suitability, ecophysiology, and the complex bi-directional relationship between geomorphology and habitat use.

  10. Coexistence of sympatric carnivores in relatively homogeneous Mediterranean landscapes: functional importance of habitat segregation at the fine-scale level.

    PubMed

    Soto, Carolina; Palomares, Francisco

    2015-09-01

    One of the main objectives of community ecology is to understand the conditions allowing species to coexist. However, few studies have investigated the role of fine-scale habitat use segregation in the functioning of guild communities in relatively homogeneous landscapes where opportunities for coexistence are likely to be the most restrictive. We investigate how the process of habitat use differentiation at the home range level according to the degree of specialism/generalism of species can lead to coexistence between guild species. We examine differences in fine-scale habitat use and niche separation as potential mechanisms explaining the coexistence of five sympatric carnivore species that differ in life history traits (Iberian lynx, Eurasian badger, Egyptian mongoose, common genet and red fox) by collecting data from systematic track censuses in a relatively homogeneous Mediterranean landscape. We found that a higher degree of specialism determines the segregation of species among the fine-scale ecological niche dimensions defined using quantitative elements associated with vegetation, landscape, prey availability and human disturbance. The species with the lowest total performance over the set of variables did not exhibit segregation in the use of habitat at this level. Our study indicates that in relatively homogeneous landscapes, there exist subtle patterns of habitat partitioning over small-scale gradients of habitat determinants as a function of the degree of specialism of carnivore species within a guild. Our results also suggest that coexistence between generalist species may be permitted by fine-scale spatial-temporal segregation of activity patterns or trophic resource consumption, but not fine-scale habitat use differentiation.

  11. Optimal Phase Oscillatory Network

    NASA Astrophysics Data System (ADS)

    Follmann, Rosangela

    2013-03-01

    Important topics as preventive detection of epidemics, collective self-organization, information flow and systemic robustness in clusters are typical examples of processes that can be studied in the context of the theory of complex networks. It is an emerging theory in a field, which has recently attracted much interest, involving the synchronization of dynamical systems associated to nodes, or vertices, of the network. Studies have shown that synchronization in oscillatory networks depends not only on the individual dynamics of each element, but also on the combination of the topology of the connections as well as on the properties of the interactions of these elements. Moreover, the response of the network to small damages, caused at strategic points, can enhance the global performance of the whole network. In this presentation we explore an optimal phase oscillatory network altered by an additional term in the coupling function. The application to associative-memory network shows improvement on the correct information retrieval as well as increase of the storage capacity. The inclusion of some small deviations on the nodes, when solutions are attracted to a false state, results in additional enhancement of the performance of the associative-memory network. Supported by FAPESP - Sao Paulo Research Foundation, grant number 2012/12555-4

  12. Oscillatory counter-centrifugation

    NASA Astrophysics Data System (ADS)

    Xu, Shujing; Nadim, Ali

    2016-02-01

    In ordinary centrifugation, a suspended particle that is heavier than the displaced fluid migrates away from the rotation axis when the fluid-filled container rotates steadily about that axis. In contrast a particle that is lighter than the displaced fluid (e.g., a bubble) migrates toward the rotation axis in a centrifuge. In this paper, we show theoretically that if a fluid-filled container rotates in an oscillatory manner as a rigid body about an axis, at high enough oscillation frequencies, the sense of migration of suspended particles is reversed. That is, in that case particles denser than the fluid migrate inward, while those that are lighter than the fluid move outward. We term this unusual phenomenon "Oscillatory Counter-Centrifugation" or OCC, for short. Through application of the method of averaging to the equations of motion, we derive a simple criterion to predict the occurrence of OCC. The analysis also reveals that the time-average of the Coriolis force in the radial direction is the term that is responsible for this effect. In addition, we analyze the effects of the Basset history force and the Rubinow-Keller lift force on particle trajectories and find that OCC persists even when these forces are active. The phenomenon awaits experimental verification.

  13. Strobes: an oscillatory combustion.

    PubMed

    Corbel, Justine M L; Lingen, Joost N J; Zevenbergen, John F; Gijzeman, Onno L J; Meijerink, Andries

    2012-04-26

    Strobe compositions belong to the class of solid combustions. They are mixtures of powdered ingredients. When ignited, the combustion front evolves in an oscillatory fashion, and flashes of light are produced by intermittence. They have fascinated many scientists since their discovery at the beginning of the 20th century. However, the chemical and physical processes involved in this curious oscillatory combustion remain unknown. Several theories have been proposed: One claims that two different reactions occur: one during the slow dark phase and another during the fast flash phase. The alternation between the phases is ascribed to heat variations. Other theories suggest that the formation of intermediate species during the dark phase and the change of phase are caused by variations in their concentration. A ternary strobe composition with ammonium perchlorate, magnalium, and barium sulfate is analyzed. The role of barium sulfate is studied by replacing it by other metal sulfates that have different physical properties (melting points), and the burning of the compositions is recorded with a high-speed camera and a spectrometer coupled with a charge-coupled device (CCD) camera. Experimental results show noticeable differences in the physical and chemical processes involved in the strobe reactions.

  14. Fine-scale genetic structure of Triatoma infestans in the Argentine Chaco.

    PubMed

    Piccinali, Romina Valeria; Gürtler, Ricardo Esteban

    2015-08-01

    The patterns of genetic structure in natural populations provide essential information for the improvement of pest management strategies including those targeting arthropod vectors of human diseases. We analyzed the patterns of fine-scale genetic structure in Triatoma infestans in a well-defined rural area close to Pampa del Indio, in the Argentine Arid-Humid Chaco transition, where a longitudinal study on house infestation and wing geometric morphometry is being conducted since 2007. A total of 228 insects collected in 16 domestic and peridomestic sites from two rural communities was genotyped for 10 microsatellite loci and analyzed. We did not find departures from Hardy-Weinberg expectations in collection sites, with three exceptions probably due to null alleles and substructuring. Domestic sites were more variable than peridomestic sites suggesting the presence of older bug populations in domestic sites or higher effective population sizes. Significant genetic structure was detected using F-statistics, a discriminant analysis of principal components and Bayesian clustering algorithms in an area of only 6.32 km(2). Microsatellite markers detected population structuring at a finer geographic scale (180-6300 m) than a previous study based on wing geometric morphometry (>4000 m). The spatial distribution of genetic variability was more properly explained by a hierarchical island than by an isolation-by-distance model. This study illustrates that, despite more than a decade without vector control interventions enhancing differentiation, genetic structure can be detected in T. infestans populations, particularly applying spatial information. This supports the potential of genetic studies to provide key information for hypothesis testing of the origins of house reinfestation.

  15. Causes and consequences of fine-scale population structure in a critically endangered freshwater seal

    PubMed Central

    2014-01-01

    Background Small, genetically uniform populations may face an elevated risk of extinction due to reduced environmental adaptability and individual fitness. Fragmentation can intensify these genetic adversities and, therefore, dispersal and gene flow among subpopulations within an isolated population is often essential for maintaining its viability. Using microsatellite and mtDNA data, we examined genetic diversity, spatial differentiation, interregional gene flow, and effective population sizes in the critically endangered Saimaa ringed seal (Phoca hispida saimensis), which is endemic to the large but highly fragmented Lake Saimaa in southeastern Finland. Results Microsatellite diversity within the subspecies (HE = 0.36) ranks among the lowest thus far recorded within the order Pinnipedia, with signs of ongoing loss of individual heterozygosity, reflecting very low effective subpopulation sizes. Bayesian assignment analyses of the microsatellite data revealed clear genetic differentiation among the main breeding areas, but interregional structuring was substantially weaker in biparentally inherited microsatellites (FST = 0.107) than in maternally inherited mtDNA (FST = 0.444), indicating a sevenfold difference in the gene flow mediated by males versus females. Conclusions Genetic structuring in the population appears to arise from the joint effects of multiple factors, including small effective subpopulation sizes, a fragmented lacustrine habitat, and behavioural dispersal limitation. The fine-scale differentiation found in the landlocked Saimaa ringed seal is especially surprising when contrasted with marine ringed seals, which often exhibit near-panmixia among subpopulations separated by hundreds or even thousands of kilometres. Our results demonstrate that population structures of endangered animals cannot be predicted based on data on even closely related species or subspecies. PMID:25005257

  16. Regulation of the Demographic Structure in Isomorphic Biphasic Life Cycles at the Spatial Fine Scale

    PubMed Central

    Vieira, Vasco Manuel Nobre de Carvalho da Silva; Mateus, Marcos Duarte

    2014-01-01

    Isomorphic biphasic algal life cycles often occur in the environment at ploidy abundance ratios (Haploid:Diploid) different from 1. Its spatial variability occurs within populations related to intertidal height and hydrodynamic stress, possibly reflecting the niche partitioning driven by their diverging adaptation to the environment argued necessary for their prevalence (evolutionary stability). Demographic models based in matrix algebra were developed to investigate which vital rates may efficiently generate an H:D variability at a fine spatial resolution. It was also taken into account time variation and type of life strategy. Ploidy dissimilarities in fecundity rates set an H:D spatial structure miss-fitting the ploidy fitness ratio. The same happened with ploidy dissimilarities in ramet growth whenever reproductive output dominated the population demography. Only through ploidy dissimilarities in looping rates (stasis, breakage and clonal growth) did the life cycle respond to a spatially heterogeneous environment efficiently creating a niche partition. Marginal locations were more sensitive than central locations. Related results have been obtained experimentally and numerically for widely different life cycles from the plant and animal kingdoms. Spore dispersal smoothed the effects of ploidy dissimilarities in fertility and enhanced the effects of ploidy dissimilarities looping rates. Ploidy dissimilarities in spore dispersal could also create the necessary niche partition, both over the space and time dimensions, even in spatial homogeneous environments and without the need for conditional differentiation of the ramets. Fine scale spatial variability may be the key for the prevalence of isomorphic biphasic life cycles, which has been neglected so far. PMID:24658603

  17. The empirical Bayes estimators of fine-scale population structure in high gene flow species.

    PubMed

    Kitada, Shuichi; Nakamichi, Reiichiro; Kishino, Hirohisa

    2017-02-27

    An empirical Bayes (EB) pairwise FST estimator was previously introduced and evaluated for its performance by numerical simulation. In this study, we conducted coalescent simulations and generated genetic population structure mechanistically, and compared the performance of the EBFST with Nei's GST , Nei & Chesser's bias-corrected GST (GST _NC ), Weir & Cockerham's ϴ (ϴWC ),( and ϴ with finite sample correction (ϴWC _F ). We also introduced EB estimators for Hedrick' G'ST and Jost' D. We applied these estimators to publicly available SNP genotypes of Atlantic herring. We also examined the power to detect the environmental factors causing the population structure. Our coalescent simulations revealed that the finite sample correction of ϴWC is necessary to assess population structure using pairwise FST values. For microsatellite markers, EBFST performed the best among the present estimators regarding both bias and precision under high gene flow scenarios (FST >0.032). For 300 SNPs, EBFST had the highest precision in all cases, but the bias was negative and greater than those for GST_NC and (ϴWC_F ) in all cases. GST_NC and (ϴWC_F ) performed very similarly at all levels of FST . As the number of loci increased up to 10 000, the precision of GST_NC and ϴWC_F became slightly better than for EBFST for cases with FST >0.004, even though the size of the bias remained constant. The EB estimators described the fine-scale population structure of the herring, and revealed that ~56% of the genetic differentiation was caused by sea surface temperature and salinity. The R package FINEPOP for implementing all estimators used here is available on CRAN. This article is protected by copyright. All rights reserved.

  18. Fine Scale ANUClimate Data for Ecosystem Modeling and Assessment of Plant Functional Types

    NASA Astrophysics Data System (ADS)

    Hutchinson, M. F.; Kesteven, J. L.; Xu, T.; Evans, B. J.; Togashi, H. F.; Stein, J. L.

    2015-12-01

    High resolution spatially extended values of climate variables play a central role in the assessment of climate and projected future climate in ecosystem modeling. The ground based meteorological network remains a key resource for deriving these spatially extended climate variables. We report on the production, and applications, of new anomaly based fine scale spatial interpolations of key climate variables at daily and monthly time scale, across the Australian continent. The methods incorporate several innovations that have significantly improved spatial predictive accuracy, as well as providing a platform for the incorporation of additional remotely sensed data. The interpolated climate data are supporting many continent-wide ecosystem modeling applications and are playing a key role in testing optimality hypotheses associated with plant functional types (PFTs). The accuracy, and robustness to data error, of anomaly-based interpolation has been enhanced by incorporating physical process aspects of the different climate variables and employing robust statistical methods implemented in the ANUSPLIN package. New regression procedures have also been developed to estimate "background" monthly climate normals from all stations with minimal records to substantially increase the density of supporting spatial networks. Monthly mean temperature interpolation has been enhanced by incorporating process based coastal effects that have reduced predictive error by around 10%. Overall errors in interpolated monthly temperature fields are around 25% less than errors reported by an earlier study. For monthly and daily precipitation, a new anomaly structure has been devised to take account of the skewness in precipitation data and the large proportion of zero values that present significant challenges to standard interpolation methods. The many applications include continent-wide Gross Primary Production modeling and assessing constraints on light and water use efficiency derived

  19. Predicting fine-scale distributions of peripheral aquatic species in headwater streams

    USGS Publications Warehouse

    DeRolph, Christopher R.; Nelson, S.; Kwak, Thomas J.; Hain, Ernie F.

    2015-01-01

    Headwater species and peripheral populations that occupy habitat at the edge of a species range may hold an increased conservation value to managers due to their potential to maximize intraspecies diversity and species' adaptive capabilities in the context of rapid environmental change. The southern Appalachian Mountains are the southern extent of the geographic range of native Salvelinus fontinalis and naturalized Oncorhynchus mykiss and Salmo trutta in eastern North America. We predicted distributions of these peripheral, headwater wild trout populations at a fine scale to serve as a planning and management tool for resource managers to maximize resistance and resilience of these populations in the face of anthropogenic stressors. We developed correlative logistic regression models to predict occurrence of brook trout, rainbow trout, and brown trout for every interconfluence stream reach in the study area. A stream network was generated to capture a more consistent representation of headwater streams. Each of the final models had four significant metrics in common: stream order, fragmentation, precipitation, and land cover. Strahler stream order was found to be the most influential variable in two of the three final models and the second most influential variable in the other model. Greater than 70% presence accuracy was achieved for all three models. The underrepresentation of headwater streams in commonly used hydrography datasets is an important consideration that warrants close examination when forecasting headwater species distributions and range estimates. Additionally, it appears that a relative watershed position metric (e.g., stream order) is an important surrogate variable (even when elevation is included) for biotic interactions across the landscape in areas where headwater species distributions are influenced by topographical gradients.

  20. Predicting fine-scale distributions of peripheral aquatic species in headwater streams

    SciTech Connect

    DeRolph, Christopher R.; Nelson, Stacy A. C.; Kwak, Thomas J.; Hain, Ernie F.

    2014-12-09

    Headwater species and peripheral populations that occupy habitat at the edge of a species range may hold an increased conservation value to managers due to their potential to maximize intraspecies diversity and species' adaptive capabilities in the context of rapid environmental change. The southern Appalachian Mountains are the southern extent of the geographic range of native Salvelinus fontinalis and naturalized Oncorhynchus mykiss and Salmo trutta in eastern North America. In this paper, we predicted distributions of these peripheral, headwater wild trout populations at a fine scale to serve as a planning and management tool for resource managers to maximize resistance and resilience of these populations in the face of anthropogenic stressors. We developed correlative logistic regression models to predict occurrence of brook trout, rainbow trout, and brown trout for every interconfluence stream reach in the study area. A stream network was generated to capture a more consistent representation of headwater streams. Each of the final models had four significant metrics in common: stream order, fragmentation, precipitation, and land cover. Strahler stream order was found to be the most influential variable in two of the three final models and the second most influential variable in the other model. Greater than 70% presence accuracy was achieved for all three models. The underrepresentation of headwater streams in commonly used hydrography datasets is an important consideration that warrants close examination when forecasting headwater species distributions and range estimates. Finally and additionally, it appears that a relative watershed position metric (e.g., stream order) is an important surrogate variable (even when elevation is included) for biotic interactions across the landscape in areas where headwater species distributions are influenced by topographical gradients.

  1. Predicting fine-scale distributions of peripheral aquatic species in headwater streams

    DOE PAGES

    DeRolph, Christopher R.; Nelson, Stacy A. C.; Kwak, Thomas J.; ...

    2014-12-09

    Headwater species and peripheral populations that occupy habitat at the edge of a species range may hold an increased conservation value to managers due to their potential to maximize intraspecies diversity and species' adaptive capabilities in the context of rapid environmental change. The southern Appalachian Mountains are the southern extent of the geographic range of native Salvelinus fontinalis and naturalized Oncorhynchus mykiss and Salmo trutta in eastern North America. In this paper, we predicted distributions of these peripheral, headwater wild trout populations at a fine scale to serve as a planning and management tool for resource managers to maximize resistancemore » and resilience of these populations in the face of anthropogenic stressors. We developed correlative logistic regression models to predict occurrence of brook trout, rainbow trout, and brown trout for every interconfluence stream reach in the study area. A stream network was generated to capture a more consistent representation of headwater streams. Each of the final models had four significant metrics in common: stream order, fragmentation, precipitation, and land cover. Strahler stream order was found to be the most influential variable in two of the three final models and the second most influential variable in the other model. Greater than 70% presence accuracy was achieved for all three models. The underrepresentation of headwater streams in commonly used hydrography datasets is an important consideration that warrants close examination when forecasting headwater species distributions and range estimates. Finally and additionally, it appears that a relative watershed position metric (e.g., stream order) is an important surrogate variable (even when elevation is included) for biotic interactions across the landscape in areas where headwater species distributions are influenced by topographical gradients.« less

  2. Imaging of Non-Resolved Objects Using the Fine Scale Optical Range

    NASA Astrophysics Data System (ADS)

    Pollock, T.; Grubb, P. M.

    2012-09-01

    The Fine Scale Optical Range (FiScOR) has been designed and assembled at the Space Engineering Research Center(SERC) at Texas A&M University to study the efficacy of on-orbit debris characterization using small space-based cameras. Physically, this facility permits imaging of small, one to two centimeter models of simple or complex shapes from a distance sufficiently great to produce image sizes of about one pixel. The objects are designed in 3D CAD and produced in plastic by 3D printing. They are then surfaced with real materials such as multi-layer insulation (MLI) and silicon solar cell fragments. Details, such as slight faceting in solar cell arrays, are achieved to dimensions as fine as 200 micrometers. Mechanisms are provided to rotate and translate the object. Illumination sources approximating the solar spectrum are used. Light curves are recorded using CCD or CMOS cameras which may be cooled or operated at ambient temperature. This research supports a more extensive body of work for the Air Force Research Lab and others examining image processing with noise terms for cameras imaging in visible and near-visible light, and assessing operational effects using synthetic space images created in the lab. For the study reported herein, a few simple objects (cubes, cylinders, etc.), two satellite models, and some shapes representing debris were imaged using a high frame rate color (Bayer mask) camera. Data obtained were compared with Phong models, and to a limited extent, with night sky images obtained using the 0.8m telescope near Stephenville, TX and smaller instruments located near College Station, TX. In some tests, low lighting levels were used to permit estimation of the maximum range at which an equivalent orbiting object would be detected by a particular camera/lens combination. Results demonstrating the potential contribution of this approach to non resolved space object characterization will be presented.

  3. Air pollution, health and social deprivation: A fine-scale risk assessment.

    PubMed

    Morelli, Xavier; Rieux, Camille; Cyrys, Josef; Forsberg, Bertil; Slama, Rémy

    2016-05-01

    Risk assessment studies often ignore within-city variations of air pollutants. Our objective was to quantify the risk associated with fine particulate matter (PM2.5) exposure in 2 urban areas using fine-scale air pollution modeling and to characterize how this risk varied according to social deprivation. In Grenoble and Lyon areas (0.4 and 1.2 million inhabitants, respectively) in 2012, PM2.5 exposure was estimated on a 10×10m grid by coupling a dispersion model to population density. Outcomes were mortality, lung cancer and term low birth weight incidences. Cases attributable to air pollution were estimated overall and stratifying areas according to the European Deprivation Index (EDI), taking 10µg/m(3) yearly average as reference (counterfactual) level. Estimations were repeated assuming spatial homogeneity of air pollutants within urban area. Median PM2.5 levels were 18.1 and 19.6μg/m(3) in Grenoble and Lyon urban areas, respectively, corresponding to 114 (5.1% of total, 95% confidence interval, CI, 3.2-7.0%) and 491 non-accidental deaths (6.0% of total, 95% CI 3.7-8.3%) attributable to long-term exposure to PM2.5, respectively. Attributable term low birth weight cases represented 23.6% of total cases (9.0-37.1%) in Grenoble and 27.6% of cases (10.7-42.6%) in Lyon. In Grenoble, 6.8% of incident lung cancer cases were attributable to air pollution (95% CI 3.1-10.1%). Risk was lower by 8 to 20% when estimating exposure through background stations. Risk was highest in neighborhoods with intermediate to higher social deprivation. Risk assessment studies relying on background stations to estimate air pollution levels may underestimate the attributable risk.

  4. Using Sensitivity Analysis and Fine-Scale Field Measurements to Understand How Canopy Interception Models Function

    NASA Astrophysics Data System (ADS)

    Siegert, C. M.; Levia, D. F., Jr.; Dowtin, A. L.; Hudson, S.; Linhoss, A.

    2015-12-01

    The capacity of the forest canopy to intercept precipitation and partition the remaining water into throughfall and stemflow largely influences the surface water budget in forested ecosystems. These processes are controlled by species-specific traits, canopy seasonality, and meteorological conditions. The complexity of these interacting factors at varying temporal and spatial scales can lead to errors in estimating canopy interception and reduce accuracy of derivative watershed hydrologic modeling efforts. To improve interception estimates, model calibration and validation must be assessed using long-term, fine-scale field measurements that capture the variability of all interacting factors. As such, field measurements of subcanopy hydrologic fluxes and meteorological conditions during discrete storm events were taken from 2007 to 2012 in a deciduous forest dominated by Fagus grandifolia and Liriodendron tulipifera in Fair Hill, Maryland, USA. Preliminary results suggest that many of the current interception models (e.g., Gash and Rutter-types) are driven primarily by evaporation terms. However, field measurements indicate that a large degree of variability in both throughfall and stemflow partitioning is derived from biophysical characteristics. For example, even within the small 12-hectare research catchment, differences in species composition induced by slight changes in elevation, coupled with slope orientation, resulted in sufficient canopy variability whereby throughfall fluxes were definitively different across small distances. Additionally, smaller trees were more efficient in generating stemflow, while species with smoother bark generated large quantities of stemflow under a variety of storm conditions—a mechanism that may further confound modeling efforts. To improve canopy interception estimates, model sensitivity analysis was used to determine the influence of current model parameters and how biophysical canopy characteristics may be further

  5. Predicting fine-scale distributions of peripheral aquatic species in headwater streams

    PubMed Central

    DeRolph, Christopher R; Nelson, Stacy A C; Kwak, Thomas J; Hain, Ernie F

    2015-01-01

    Headwater species and peripheral populations that occupy habitat at the edge of a species range may hold an increased conservation value to managers due to their potential to maximize intraspecies diversity and species' adaptive capabilities in the context of rapid environmental change. The southern Appalachian Mountains are the southern extent of the geographic range of native Salvelinus fontinalis and naturalized Oncorhynchus mykiss and Salmo trutta in eastern North America. We predicted distributions of these peripheral, headwater wild trout populations at a fine scale to serve as a planning and management tool for resource managers to maximize resistance and resilience of these populations in the face of anthropogenic stressors. We developed correlative logistic regression models to predict occurrence of brook trout, rainbow trout, and brown trout for every interconfluence stream reach in the study area. A stream network was generated to capture a more consistent representation of headwater streams. Each of the final models had four significant metrics in common: stream order, fragmentation, precipitation, and land cover. Strahler stream order was found to be the most influential variable in two of the three final models and the second most influential variable in the other model. Greater than 70% presence accuracy was achieved for all three models. The underrepresentation of headwater streams in commonly used hydrography datasets is an important consideration that warrants close examination when forecasting headwater species distributions and range estimates. Additionally, it appears that a relative watershed position metric (e.g., stream order) is an important surrogate variable (even when elevation is included) for biotic interactions across the landscape in areas where headwater species distributions are influenced by topographical gradients. PMID:25628872

  6. Fine-scale predictions of distributions of Chagas disease vectors in the state of Guanajuato, Mexico.

    PubMed

    López-Cárdenas, Jorge; Gonzalez Bravo, Francisco Ernesto; Salazar Schettino, Paz Maria; Gallaga Solorzano, Juan Carlos; Ramírez Barba, Ector; Martinez Mendez, Joel; Sánchez-Cordero, V; Peterson, A Townsend; Ramsey, J M

    2005-11-01

    One of the most daunting challenges for Chagas disease surveillance and control in Mexico is the lack of community level data on vector distributions. Although many states now have assembled representative domestic triatomine collections, only two triatomine specimens had been collected and reported previously from the state of Guanajuato. Field personnel from the state's Secretaría de Salud conducted health promotion activities in 43 of the 46 counties in the state and received donations of a total of 2,522 triatomine specimens between 1998 and 2002. All specimens were identified, and live insects examined for Trypanosoma cruzi. In an effort to develop fine-scale distributional data for Guanajuato, collection localities were georeferenced and ecological niches were modeled for each species by using evolutionary-computing approaches. Five species were collected: Triatoma mexicana (Herrich-Schaeffer), Triatoma longipennis (Usinger), Triatoma pallidipennis (Stål), Triatoma barberi (Usinger), and Triatoma dimidiata (Latreille) from 201 communities located at elevations of 870-2,200 m. Based on collection success, T. mexicana had the broadest dispersion, although niche mapping indicates that T. barberi represents the greatest risk for transmission of Chagas disease in the state. T. dimidiata was represented in collections by a single adult collected from one village outside the predicted area for all species. For humans, an estimated 3,755,380 individuals are at risk for vector transmission in the state, with an incidence of 3,500 new cases per year; overall seroprevalences of 2.6% indicate that 97,640 individuals are infected with T. cruzi at present, including 29,300 chronic cases.

  7. Fine-scale statistics of temperature and its derivatives in convective turbulence

    NASA Astrophysics Data System (ADS)

    Emran, M. S.; Schumacher, J.

    We study the fine-scale statistics of temperature and its derivatives in turbulent Rayleighnard convection. Direct numerical simulations are carried out in a cylindrical cell with unit aspect ratio filled with a fluid with Prandtl number equal to 0.7 for Rayleigh numbers between 107 and 109. The probability density function of the temperature or its fluctuations is found to be always non-Gaussian. The asymmetry and strength of deviations from the Gaussian distribution are quantified as a function of the cell height. The deviations of the temperature fluctuations from the local isotropy, as measured by the skewness of the vertical derivative of the temperature fluctuations, decrease in the bulk, but increase in the thermal boundary layer for growing Rayleigh number, respectively. Similarly to the passive scalar mixing, the probability density function of the thermal dissipation rate deviates significantly from a log-normal distribution. The distribution is fitted well by a stretched exponential form. The tails become more extended with increasing Rayleigh number which displays an increasing degree of small-scale intermittency of the thermal dissipation field for both the bulk and the thermal boundary layer. We find that the thermal dissipation rate due to the temperature fluctuations is not only dominant in the bulk of the convection cell, but also yields a significant contribution to the total thermal dissipation in the thermal boundary layer. This is in contrast to the ansatz used in scaling theories and can explain the differences in the scaling of the total thermal dissipation rate with respect to the Rayleigh number.

  8. Evaluation of multispectral, fine scale digital imagery as a tool for mapping stream morphology

    NASA Astrophysics Data System (ADS)

    Wright, Andrea; Marcus, W. Andrew; Aspinall, Richard

    2000-05-01

    Multispectral digital imagery acquired from Soda Butte and Cache Creeks, Montana and Wyoming was used in conjunction with field data to classify and map hydrogeomorphic stream units on four stream reaches. The morphologic units that were field mapped were eddy drop zones, glides, low gradient riffles, high gradient riffles, lateral scour pools, attached bars, detached bars, and large woody debris. Unsupervised and supervised classifications of the imagery were used to develop a Maximum Joint Probability classification and an Alternative Joint Probability classification of the stream reaches. The Maximum Joint Probability classification allowed only one of the image classes to represent each hydrogeomorphic unit on the field map and resulted in relatively low overall accuracies for identification of these units of 10% to 50%. The Alternative Joint Probability classification allowed each image class to represent any geomorphic unit where the probability of a correct classification was greater than random. In this technique, two or three image classes were assigned to represent each hydrogeomorphic unit, resulting in higher overall accuracies of 28% to 80%. Accurate classification of hydrogeomorphic units was hampered by poor rectification of imagery with the field maps because of inadequate ground control points. In general, the largest hydrogeomorphic units were most accurately classified, whereas units that were small in area or spatially linear were least likely to be accurately classified. The results of this study demonstrated that multispectral digital imagery has the potential to be a useful tool for mapping hydrogeomorphic stream units at fine scales. Imagery to be an effective tool, however, careful measures such as accurate documentation of ground control points must be taken to ensure accurate rectification of the imagery with field maps.

  9. Fine-scale tracking of marine turtles using GPS-Argos PTTs.

    PubMed

    Yasuda, Tohya; Arai, Nobuaki

    2005-05-01

    High-accuracy location data of wildlife telemetry using conventional satellite location systems are difficult to obtain. However, such data are necessary to clarify the nature of movements and home range sizes of animals. In order to measure the high-accuracy location data, we developed new GPS-Argos Platform Terminal Transmitters (PTTs) which transmit both the conventional location and GPS location simultaneously. Two experiments, one in an artificial rearing pond and the other in the open sea, were performed. First, two hawksbill turtles were tracked with the PTTs in a 5 ha breeding pond in Thailand. Their home ranges using both data were calculated and found to be 2.96 ha and 0.93 ha by the GPS data, and 156,740 ha and 184,478 ha by a conventional data. Secondly, a female green turtle attached with the GPS-Argos was released from the coast of Pangnga Province, Thailand. There was a relationship between depth and speed of travel based on the GPS data. The data from the PTT showed that the turtle moved south along the coastline at the depth of less than 20 m for 5 days, and then stayed at a depth of less than 10 m for 4 days. However, we could not find any clear relationship using conventional data. Only a meandering movement at a variety of depths was observed. The results of the two experiments indicated the PTTs have an enormous potential for enhancing our understanding of fine-scale movement patterns and home ranges of marine turtles.

  10. Oscillatory Threshold Logic

    PubMed Central

    Borresen, Jon; Lynch, Stephen

    2012-01-01

    In the 1940s, the first generation of modern computers used vacuum tube oscillators as their principle components, however, with the development of the transistor, such oscillator based computers quickly became obsolete. As the demand for faster and lower power computers continues, transistors are themselves approaching their theoretical limit and emerging technologies must eventually supersede them. With the development of optical oscillators and Josephson junction technology, we are again presented with the possibility of using oscillators as the basic components of computers, and it is possible that the next generation of computers will be composed almost entirely of oscillatory devices. Here, we demonstrate how coupled threshold oscillators may be used to perform binary logic in a manner entirely consistent with modern computer architectures. We describe a variety of computational circuitry and demonstrate working oscillator models of both computation and memory. PMID:23173034

  11. Combined atom-probe and electron microscopy characterization of fine scale structures in aged primary coolant pipe stainless steel

    SciTech Connect

    Bentley, J.; Miller, M.K.

    1986-01-01

    The capabilities and complementary nature of atom probe field-ion microscopy (APFIM) and analytical electron microscopy (AEM) for the characterization of fine-scale microstructures are illustrated by examination of the changes that occur after long term thermal aging of cast CF 8 and CF 8M duplex stainless steels. In material aged at 300 or 400/sup 0/C for up to 70,000 h, the ferrite had spinodally decomposed into a modulated fine-scaled interconnected network consisting of an iron-rich ..cap alpha.. phase and a chromium-enriched ..cap alpha..' phase with periodicities of between 2 and 9 nm. G-phase precipitates 2 to 10 nm in diameter were also observed in the ferrite at concentrations of more than 10/sup 21/ m/sup -3/. The reported degradation in mechanical properties is most likely a consequence of the spinodal decomposition in the ferrite.

  12. Detection of a Fine-scale Discontinuity of Photospheric Magnetic Fields Associated with Solar Coronal Loop Brightenings

    NASA Astrophysics Data System (ADS)

    Song, Donguk; Chae, Jongchul; Park, Soyoung; Cho, Kyung-Suk; Lim, Eun-Kyung; Ahn, Kwangsu; Cao, Wenda

    2015-09-01

    We present the transient brightening of a coronal loop and an associated fine-scale magnetic discontinuity detected in the photosphere. Utilizing the high-resolution data taken with the Fast Imaging Solar Spectrograph and InfraRed Imaging Magnetograph of the New Solar Telescope at Big Bear Solar Observatory, we detect a narrow lane of intense horizontal magnetic field representing a magnetic discontinuity. It was visible as a dark lane partially encircling a pore in the continuum image, and was located near one of the footpoints of a small coronal loop that experienced transient brightenings. The horizontal field strength gradually increased before the loop brightening, and then rapidly decreased in the impulsive phase of the brightening, suggesting the increase of the magnetic non-potentiality at the loop footpoint and the sudden release of magnetic energy via magnetic reconnection. Our results support the nanoflare theory that coronal heating events are caused by magnetic reconnection events at fine-scale magnetic discontinuities.

  13. DETECTION OF A FINE-SCALE DISCONTINUITY OF PHOTOSPHERIC MAGNETIC FIELDS ASSOCIATED WITH SOLAR CORONAL LOOP BRIGHTENINGS

    SciTech Connect

    Song, Donguk; Chae, Jongchul; Park, Soyoung; Cho, Kyung-Suk; Lim, Eun-Kyung; Ahn, Kwangsu; Cao, Wenda

    2015-09-10

    We present the transient brightening of a coronal loop and an associated fine-scale magnetic discontinuity detected in the photosphere. Utilizing the high-resolution data taken with the Fast Imaging Solar Spectrograph and InfraRed Imaging Magnetograph of the New Solar Telescope at Big Bear Solar Observatory, we detect a narrow lane of intense horizontal magnetic field representing a magnetic discontinuity. It was visible as a dark lane partially encircling a pore in the continuum image, and was located near one of the footpoints of a small coronal loop that experienced transient brightenings. The horizontal field strength gradually increased before the loop brightening, and then rapidly decreased in the impulsive phase of the brightening, suggesting the increase of the magnetic non-potentiality at the loop footpoint and the sudden release of magnetic energy via magnetic reconnection. Our results support the nanoflare theory that coronal heating events are caused by magnetic reconnection events at fine-scale magnetic discontinuities.

  14. Fine Scale Structure observed in the Total Electron Content above the Sub-Auroral, Auroral, and Polar Ionosphere

    NASA Astrophysics Data System (ADS)

    Coster, A. J.; Thomas, E. G.; Vierinen, J.; Rideout, W. E.

    2015-12-01

    This paper details recent improvements in TEC observations made in the sub-auroral, auroral, and polar regions. The goal is high-resolution measurements of both medium and fine-scale TEC-gradients. To achieve this, the number of GNSS receivers processed was more than doubled, due to agreements made with multiple government and commercial agencies, such as those involved with highway transportation and precision farming. Following the increase in GNSS observations, additional improvements were made in the MIT Haystack GNSS data processing algorithms, allowing for finer grid spacing of the output TEC data. Merging data sets also increased sensitivity. Scintillation data from several GNSS receivers have been overlaid on top of all-sky camera images showing evidence of aurora. These data sets have been merged with the measured background TEC to monitor the development both medium and fine-scale TEC gradients. Data from multiple geomagnetic storms and auroral events in this solar cycle will be presented.

  15. A nanobuffer reporter library for fine-scale imaging and perturbation of endocytic organelles | Office of Cancer Genomics

    Cancer.gov

    Endosomes, lysosomes and related catabolic organelles are a dynamic continuum of vacuolar structures that impact a number of cell physiological processes such as protein/lipid metabolism, nutrient sensing and cell survival. Here we develop a library of ultra-pH-sensitive fluorescent nanoparticles with chemical properties that allow fine-scale, multiplexed, spatio-temporal perturbation and quantification of catabolic organelle maturation at single organelle resolution to support quantitative investigation of these processes in living cells.

  16. Frontal Oscillatory Dynamics Predict Feedback Learning and Action Adjustment

    ERIC Educational Resources Information Center

    van de Vijver, Irene; Ridderinkhof, K. Richard; Cohen, Michael X.

    2011-01-01

    Frontal oscillatory dynamics in the theta (4-8 Hz) and beta (20-30 Hz) frequency bands have been implicated in cognitive control processes. Here we investigated the changes in coordinated activity within and between frontal brain areas during feedback-based response learning. In a time estimation task, participants learned to press a button after…

  17. Fine-Scale Spatial Variability of Precipitation, Soil, and Plant Water Isotopes

    NASA Astrophysics Data System (ADS)

    Goldsmith, G. R.; Braun, S.; Romero, C.; Engbersen, N.; Gessler, A.; Siegwolf, R. T.; Schmid, L.

    2015-12-01

    constrain the variability within different water sources across space (e.g. when vizualized as isoscapes), as well as the extent of fractionation among those sources as water moves through the critical zone. In doing so, we also provide insight into how environment shapes this fine-scale variation in order to inform future applications of water isotopes.

  18. Fine-scale spatial variation in plant species richness and its relationship to environmental conditions in coastal marshlands

    USGS Publications Warehouse

    Mancera, J.E.; Meche, G.C.; Cardona-Olarte, P.P.; Castaneda-Moya, E.; Chiasson, R.L.; Geddes, N.A.; Schile, L.M.; Wang, H.G.; Guntenspergen, G.R.; Grace, J.B.

    2005-01-01

    Previous studies have shown that variations in environmental conditions play a major role in explaining variations in plant species richness at community and landscape scales. In this study, we considered the degree to which fine-scale spatial variations in richness could be related to fine-scale variations in abiotic and biotic factors. To examine spatial variation in richness, grids of 1 m(2) plots were laid out at five sites within a coastal riverine wetland landscape. At each site, a 5 x 7 array of plots was established adjacent to the river's edge with plots one meter apart. In addition to the estimation of species richness, environmental measurements included sediment salinity, plot microelevation, percent of plot recently disturbed, and estimated community biomass. Our analysis strategy was to combine the use of structural equation modeling (path modeling) with an assessment of spatial association. Mantel's tests revealed significant spatial autocorrelation in species richness at four of the five sites sampled, indicating that richness in a plot correlated with the richness of nearby plots. We subsequently considered the degree to which spatial autocorrelations in richness could be explained by spatial autocorrelations in environmental conditions. Once data were corrected for environmental correlations, spatial autocorrelation in residual species richness could not be detected at any site. Based on these results, we conclude that in this coastal wetland, there appears to be a fine-scale mapping of diversity to microgradients in environmental conditions.

  19. Oscillatory growth for twisting crystals.

    PubMed

    Ibaraki, Shunsuke; Ise, Ryuta; Ishimori, Koichiro; Oaki, Yuya; Sazaki, Gen; Yokoyama, Etsuro; Tsukamoto, Katsuo; Imai, Hiroaki

    2015-05-18

    We demonstrate the oscillatory phenomenon for the twisting growth of a triclinic crystal through in situ observation of the concentration field around the growing tip of a needle by high-resolution phase-shift interferometry.

  20. Solar fine scale structures in the corona, transition region, and lower atmosphere

    NASA Technical Reports Server (NTRS)

    Moses, Dan; Cook, J. W.; Bartoe, J. -D. F.; Brueckner, G. E.; Dere, K. P.; Webb, D. F.; Davis, J. M.; Harvey, J. W.; Realy, F.; Martin, S. F.

    1994-01-01

    The American Science and Engineering Soft X-ray Imaging Payload and the Naval Research Laboratory High Resolution Telescope and Spectrograph (HRTS) were launched from White Sands on 1987 December 11 in coordinated sounding rocket flights. The goal was to investigate the correspondence of fine-scale structures from different temperature regimes in the solar atmosphere, and particularly the relationship between X-ray bright points (XBPs) and transition region explosive events. We present results of the analysis of co-aligned X-ray images, maps of sites of transition region explosive events observed in C IV 10(exp 5), HRTS 1600 A spectroheliograms of the T(sub min) region, and ground-based magnetogram and He I 10830 A images. We examined the relationship of He I 10830 A dark features and evolving magnetic features which correspond to XBPs. We note a frequent double ribbon pattern of the He I dark feature counterparts to XBPs. We discuss an analysis of the relationship of XBPs to evolving magnetic features by Webb et al., which shows that converging magnetic features of opposite polarity are the most significant magnetic field counterparts to XBPs. The magnetic bipolar features associated with XBPs appear as prominent network elements in chromospheric and transition region images. The features in C IV observations corresponding to XBP sites are in general bright, larger scale (approximately 10 arcsec) regions of complex velocity fields of order 40 km/s, which is typical of brighter C IV network elements. These C IV features do not reach the approximately 100 km/s velocities seen in the C IV explosive events. Also, there are many similar C IV bright network features without a corresponding XBP in the X-ray image. The transition region explosive events do not correspond directly to XBPs. The explosive events appear to be concentrated in the quiet Sun at the edges of strong network, or within weaker field strength network regions. We find a greater number of C IV events

  1. Fine-scale ignimbrite morphology revealed in LiDAR at Crater Lake, OR

    NASA Astrophysics Data System (ADS)

    Robinson, J. E.; Bacon, C. R.; Wright, H. M.

    2011-12-01

    Mount Mazama erupted ~7,700 years ago resulting in the collapse of Crater Lake caldera, ash fall across the Pacific Northwest, and emplacement of compositionally zoned ignimbrite. Early climactic ignimbrite contains uniform rhyodacitic pumice and traveled far from the vent, whereas late, less mobile ignimbrite is dominated by crystal-rich andesitic scoria and mafic crystal mush. Funded by the USGS, NPS, and FHWA, the DOGAMI-led Oregon LiDAR Consortium contracted with Watershed Services to collect ~800 km2 of LiDAR over Crater Lake National Park from Aug 2010 to Sept 2010. Ground laser returns have an average density of 1.63 returns/m2 over the heavily forested area of interest. The data have a lateral RMSE and vertical accuracy of 0.05 m. A bare earth terrain model allows a virtual removal of the forest, revealing fine-scale surface morphology, notably in the climactic ignimbrite. Secondary pyroclastic flows, explosion craters, erosion by water, and compaction-related deformation modified the originally smooth ignimbrite surface. Distinct pyroclastic flow fronts are evident in the LiDAR in Annie Creek valley. Leveed flows stand approximately 5 m above the lower ignimbrite surface, and individual toes are about 1-2 m high. Preliminary field checking indicates that rhyodacitic pumice dominates the lower ignimbrite surface, but the leveed flows are a subequal mix of locally oxidized rhyodacitic pumice and andesitic scoria. We hypothesize that these deposits were secondary pyroclastic flows formed by gravitational failure of late ignimbrite. In the Castle Creek valley, is a 2-meter collapse scarp that may have spawned a small secondary pyroclastic flow; several such headwall scarps are present in Sand Creek valley. Differential compaction features are common in many thick ignimbrites. We suggest this caused the deformation of the ignimbrite apparent in the LiDAR. In Annie Creek valley are a series of flow parallel asymmetric ridges, with shallower slopes toward the

  2. Magnesium content within the skeletal architecture of the coral Montastraea faveolata: locations of brucite precipitation and implications to fine-scale data fluctuations

    USGS Publications Warehouse

    Buster, N.A.; Holmes, C.W.

    2006-01-01

    Small portions of coral cores were analyzed using a high-resolution laser ablation inductively coupled plasma mass spectrometer (LA ICP-MS) to determine the geochemical signatures within and among specific skeletal structures in the large framework coral, Montastraea faveolata. Vertical transects were sampled along three parallel skeletal structures: endothecal (septal flank), corallite wall, and exothecal (costal flank) areas. The results demonstrate that trace element levels varied among the three structures. Magnesium (Mg) varied among adjacent structures and was most abundant within the exothecal portion of the skeleton. Scanning electron microscopy (SEM) revealed the presence of hexagonal crystals forming thick discs, pairs or doublets of individual crystals, and rosettes in several samples. High Mg within these crystals was confirmed with energy dispersive spectroscopy (EDS), infrared spectrometry, and LA ICP-MS. The chemical composition is consistent with the mineral brucite [Mg(OH2)]. These crystals are located exclusively in the exothecal area of the skeleton, are often associated with green endolithic algae, and are commonly associated with increased Mg levels found in the adjacent corallite walls. Although scattered throughout the exothecal, the brucite crystals are concentrated within green bands where levels of Mg increase substantially relative to other portions of the skeleton. The presence and locations of high-Mg crystals may explain the fine-scale fluctuations in Mg data researchers have been questioning for years.

  3. The slowed brain: cortical oscillatory activity in hepatic encephalopathy.

    PubMed

    Butz, Markus; May, Elisabeth S; Häussinger, Dieter; Schnitzler, Alfons

    2013-08-15

    Oscillatory activity of the human brain has received growing interest as a key mechanism of large-scale integration across different brain regions. Besides a crucial role of oscillatory activity in the emergence of other neurological and psychiatric diseases, recent evidence indicates a key role in the pathophysiology of hepatic encephalopathy (HE). This review summarizes the current knowledge on pathological alterations of oscillatory brain activity in association with liver dysfunction and HE in the context of spontaneous brain activity, motor symptoms, sensory processing, and attention. The existing literature demonstrates a prominent slowing of the frequency of oscillatory activity as shown for spontaneous brain activity at rest, with respect to deficits of motor behavior and motor symptoms, and in the context of visual attention processes. The observed slowing extends across different subsystems of the brain and has been confirmed across different frequency bands, providing evidence for ubiquitous changes of oscillatory activity in HE. For example, the frequency of cortico-muscular coherence in HE patients appears at the frequency of the mini-asterixis (⩽12Hz), while cirrhotics without overt signs of HE show coherence similar to healthy subjects, i.e. at 13-30Hz. Interestingly, the so-called critical flicker frequency (CFF) as a measure of the processing of an oscillating visual stimulus has emerged as a useful tool to quantify HE disease severity, correlating with behavioral and neurophysiological alterations. Moreover, the CFF reliably distinguishes patients with manifest HE from cirrhotics without any signs of HE and healthy controls using a cut-off frequency of 39Hz. In conclusion, oscillatory activity is globally slowed in HE in close association with HE symptoms and disease severity. Although the underlying causal mechanisms are not yet understood, these results indicate that pathological changes of oscillatory activity play an important role in the

  4. Spatial and seasonal patterns of fine-scale to mesoscale upper ocean dynamics in an Eastern Boundary Current System

    NASA Astrophysics Data System (ADS)

    Grados, Daniel; Bertrand, Arnaud; Colas, François; Echevin, Vincent; Chaigneau, Alexis; Gutiérrez, Dimitri; Vargas, Gary; Fablet, Ronan

    2016-03-01

    The physical forcing of the ocean surface includes a variety of energetic processes, ranging from internal wave (IW) to submesoscale and mesoscale, associated with characteristic horizontal scales. While the description of mesoscale ocean dynamics has greatly benefited from the availability of satellite data, observations of finer scale patterns remain scarce. Recent studies showed that the vertical displacements of the oxycline depth, which separates the well-mixed oxygenated surface layer from the less oxygenated deeper ocean, estimated by acoustics, provide a robust proxy of isopycnal displacements over a wide range of horizontal scales. Using a high-resolution and wide-range acoustic data set in the Northern Humboldt Current System (NHCS) off Peru, the spatial and temporal patterns of fine-scale-to-mesoscale upper ocean dynamics are investigated. The spectral content of oxycline/pycnocline profiles presents patterns characteristic of turbulent flows, from the mesoscale to the fine scale, and an energization at the IW scale (2 km-200 m). On the basis of a typology performed on 35,000 structures we characterized six classes of physical structures according to their shape and scale range. The analysis reveals the existence of distinct features for the fine-scale range below ∼2-3 km, and clearly indicates the existence of intense IW and submesoscale activity over the entire NHCS region. Structures at scales smaller than ∼2 km were more numerous and energetic in spring than in summer. Their spatiotemporal variability supports the interpretation that these processes likely relate to IW generation by interactions between tidal flows, stratification and the continental slope. Given the impact of the physical forcing on the biogeochemical and ecological dynamics in EBUS, these processes should be further considered in future ecosystem studies based on observations and models. The intensification of upper ocean stratification resulting from climate change makes such

  5. Estimation of fine-scale recombination intensity variation in the white-echinus interval of D. melanogaster

    PubMed Central

    Singh, Nadia D.; Aquadro, Charles F.; Clark, Andrew G.

    2009-01-01

    Accurate assessment of local recombination rate variation is crucial for understanding the recombination process and for determining the impact of natural selection on linked sites. In Drosophila, local recombination intensity has been estimated primarily by statistical approaches, estimating the local slope of the relationship between the physical and genetic maps. However, these estimates are limited in resolution, and as a result, the physical scale at which recombination intensity varies in Drosophila is largely unknown. While there is some evidence suggesting as much as a 40-fold variation in crossover rate at a local scale in D. pseudoobscura, little is known about the fine-scale structure of recombination rate variation in D. melanogaster. Here, we experimentally examine the fine-scale distribution of crossover events in a 1.2 Mb region on the D. melanogaster X chromosome using a classic genetic mapping approach. Our results show that crossover frequency is significantly heterogeneous within this region, varying ~ 3.5 fold. Simulations suggest that this degree of heterogeneity is sufficient to affect levels of standing nucleotide diversity, although the magnitude of this effect is small. We recover no statistical association between empirical estimates of nucleotide diversity and recombination intensity, which is likely due to the limited number of loci sampled in our population genetic dataset. However, codon bias is significantly negatively correlated with fine-scale recombination intensity estimates, as expected. Our results shed light on the relevant physical scale to consider in evolutionary analyses relating to recombination rate, and highlight the motivations to increase the resolution of the recombination map in Drosophila. PMID:19504037

  6. Fine-scale genetic population structure in a mobile marine mammal: inshore bottlenose dolphins in Moreton Bay, Australia.

    PubMed

    Ansmann, Ina C; Parra, Guido J; Lanyon, Janet M; Seddon, Jennifer M

    2012-09-01

    Highly mobile marine species in areas with no obvious geographic barriers are expected to show low levels of genetic differentiation. However, small-scale variation in habitat may lead to resource polymorphisms and drive local differentiation by adaptive divergence. Using nuclear microsatellite genotyping at 20 loci, and mitochondrial control region sequencing, we investigated fine-scale population structuring of inshore bottlenose dolphins (Tursiops aduncus) inhabiting a range of habitats in and around Moreton Bay, Australia. Bayesian structure analysis identified two genetic clusters within Moreton Bay, with evidence of admixture between them (F(ST) = 0.05, P = 0.001). There was only weak isolation by distance but one cluster of dolphins was more likely to be found in shallow southern areas and the other in the deeper waters of the central northern bay. In further analysis removing admixed individuals, southern dolphins appeared genetically restricted with lower levels of variation (AR = 3.252, π = 0.003) and high mean relatedness (r = 0.239) between individuals. In contrast, northern dolphins were more diverse (AR = 4.850, π = 0.009) and were mixing with a group of dolphins outside the bay (microsatellite-based STRUCTURE analysis), which appears to have historically been distinct from the bay dolphins (mtDNA Φ(ST) = 0.272, P < 0.001). This study demonstrates the ability of genetic techniques to expose fine-scale patterns of population structure and explore their origins and mechanisms. A complex variety of inter-related factors including local habitat variation, differential resource use, social behaviour and learning, and anthropogenic disturbances are likely to have played a role in driving fine-scale population structure among bottlenose dolphins in Moreton Bay.

  7. Green light: gross primary production influences seasonal stream N export by controlling fine-scale N dynamics.

    PubMed

    Lupon, Anna; Martí, Eugènia; Sabater, Francesc; Bernal, Susana

    2016-01-01

    Monitoring nutrient concentrations at fine-scale temporal resolution contributes to a better understanding of nutrient cycling in stream ecosystems. However, the mechanisms underlying fine-scale nutrient dynamics and its implications for budget catchent fluxes are still poorly understood. To gain understanding of patterns and controls of fine-scale stream nitrogen (N) dynamics and to assess how they affect hydrological N fluxes, we explored diel variation in stream nitrate (NO3-) concentration along a headwater stream with increasing riparian area and channel width. At the downstream site, the highest day-night variations occurred in early spring, when stream NO3- concentrations were 13% higher at night than at daytime. Such day-night variations were strongly related to daily light inputs (R2 = 0.74) and gross primary production (GPP; R2 = 0.74), and they showed an excellent fit with day-night NO- variations predicted from GPP (R2 = 0.85). These results suggest that diel fluctuations in stream NO3- concentration were mainly driven by photoautotrophic N uptake. Terrestrial influences were discarded because no simultaneous diel variations in stream discharge, riparian groundwater level, or riparian solute concentration were observed. In contrast to the downstream site, no diel variations in NO3- concentration occurred at the upstream site, likely because water temperature was colder (10 degrees C vs. 12 degrees C) and light availability was lower (4 vs. 9 mol x m(-2) x d(-1)). Although daily GPP was between 10- and 100-fold lower than daily respiration, photoautotrophic N uptake contributed to a 10% reduction in spring NO3- loads at the downstream site. Our study clearly shows that the activity of photoautotrophs can substantially change over time and along the stream continuum in response to key environmental drivers such as light and temperature, and further, that its capacity to regulate diel and seasonal N fluxes can be important even in low-productivity streams.

  8. Fine scale population genetic structure of Varroa destructor, an ectoparasitic mite of the honey bee (Apis mellifera).

    PubMed

    Dynes, Travis L; De Roode, Jacobus C; Lyons, Justine I; Berry, Jennifer A; Delaplane, Keith S; Brosi, Berry J

    2016-01-01

    Varroa destructor is an obligate ectoparasitic mite and the most important biotic threat currently facing honey bees (Apis mellifera). We used neutral microsatellites to analyze previously unreported fine scale population structure of V. destructor, a species characterized by extreme lack of genetic diversity owing to multiple bottleneck events, haplodiploidy, and primarily brother-sister matings. Our results surprisingly indicate that detectable hierarchical genetic variation exists between apiaries, between colonies within an apiary, and even within colonies. This finding of within-colony parasite diversity provides empirical evidence that the spread of V. destructor is not accomplished solely by vertical transmission but that horizontal transmission (natural or human-mediated) must occur regularly.

  9. Wavelet analysis of fine-scale structures in the Saturnian B and C rings using data from the Cassini spacecraft

    SciTech Connect

    Postnikov, E. B. Loskutov, A. Yu.

    2007-03-15

    A continuous wavelet transform with a complex Morlet basis offers an effective method for the analysis of an instant variable periodicity in the spatially inhomogeneous matter density in the radial structure of Saturn's rings. An original algorithm that reduces the integral transform to solving a Cauchy problem for a partial differential equation is used for an analysis of the images of Saturn's B and C rings, which were obtained in the second half of 2004 from the Cassini spacecraft. This paper is a continuation of our preceding study of the fine-scale structure of Saturn's rings reported in Zh. Eksp. Teor. Fiz. 128, 752 (2005) [JETP 101, 646 (2005)].

  10. Oscillatory integration windows in neurons

    PubMed Central

    Gupta, Nitin; Singh, Swikriti Saran; Stopfer, Mark

    2016-01-01

    Oscillatory synchrony among neurons occurs in many species and brain areas, and has been proposed to help neural circuits process information. One hypothesis states that oscillatory input creates cyclic integration windows: specific times in each oscillatory cycle when postsynaptic neurons become especially responsive to inputs. With paired local field potential (LFP) and intracellular recordings and controlled stimulus manipulations we directly test this idea in the locust olfactory system. We find that inputs arriving in Kenyon cells (KCs) sum most effectively in a preferred window of the oscillation cycle. With a computational model, we show that the non-uniform structure of noise in the membrane potential helps mediate this process. Further experiments performed in vivo demonstrate that integration windows can form in the absence of inhibition and at a broad range of oscillation frequencies. Our results reveal how a fundamental coincidence-detection mechanism in a neural circuit functions to decode temporally organized spiking. PMID:27976720

  11. Oscillatory integration windows in neurons.

    PubMed

    Gupta, Nitin; Singh, Swikriti Saran; Stopfer, Mark

    2016-12-15

    Oscillatory synchrony among neurons occurs in many species and brain areas, and has been proposed to help neural circuits process information. One hypothesis states that oscillatory input creates cyclic integration windows: specific times in each oscillatory cycle when postsynaptic neurons become especially responsive to inputs. With paired local field potential (LFP) and intracellular recordings and controlled stimulus manipulations we directly test this idea in the locust olfactory system. We find that inputs arriving in Kenyon cells (KCs) sum most effectively in a preferred window of the oscillation cycle. With a computational model, we show that the non-uniform structure of noise in the membrane potential helps mediate this process. Further experiments performed in vivo demonstrate that integration windows can form in the absence of inhibition and at a broad range of oscillation frequencies. Our results reveal how a fundamental coincidence-detection mechanism in a neural circuit functions to decode temporally organized spiking.

  12. Fine-scale genetic structure reflects sex-specific dispersal strategies in a population of sociable weavers (Philetairus socius).

    PubMed

    van Dijk, René E; Covas, Rita; Doutrelant, Claire; Spottiswoode, Claire N; Hatchwell, Ben J

    2015-08-01

    Dispersal is a critical driver of gene flow, with important consequences for population genetic structure, social interactions and other biological processes. Limited dispersal may result in kin-structured populations in which kin selection may operate, but it may also increase the risk of kin competition and inbreeding. Here, we use a combination of long-term field data and molecular genetics to examine dispersal patterns and their consequences for the population genetics of a highly social bird, the sociable weaver (Philetairus socius), which exhibits cooperation at various levels of sociality from nuclear family groups to its unique communal nests. Using 20 years of data, involving capture of 6508 birds and 3151 recaptures at 48 colonies, we found that both sexes exhibit philopatry and that any dispersal occurs over relatively short distances. Dispersal is female-biased, with females dispersing earlier, further, and to less closely related destination colonies than males. Genotyping data from 30 colonies showed that this pattern of dispersal is reflected by fine-scale genetic structure for both sexes, revealed by isolation by distance in terms of genetic relatedness and significant genetic variance among colonies. Both relationships were stronger among males than females. Crucially, significant relatedness extended beyond the level of the colony for both sexes. Such fine-scale population genetic structure may have played an important role in the evolution of cooperative behaviour in this species, but it may also result in a significant inbreeding risk, against which female-biased dispersal alone is unlikely to be an effective strategy.

  13. Genetic Geostatistical Framework for Spatial Analysis of Fine-Scale Genetic Heterogeneity in Modern Populations: Results from the KORA Study.

    PubMed

    Diaz-Lacava, A N; Walier, M; Holler, D; Steffens, M; Gieger, C; Furlanello, C; Lamina, C; Wichmann, H E; Becker, T

    2015-01-01

    Aiming to investigate fine-scale patterns of genetic heterogeneity in modern humans from a geographic perspective, a genetic geostatistical approach framed within a geographic information system is presented. A sample collected for prospective studies in a small area of southern Germany was analyzed. None indication of genetic heterogeneity was detected in previous analysis. Socio-demographic and genotypic data of German citizens were analyzed (212 SNPs; n = 728). Genetic heterogeneity was evaluated with observed heterozygosity (H O ). Best-fitting spatial autoregressive models were identified, using socio-demographic variables as covariates. Spatial analysis included surface interpolation and geostatistics of observed and predicted patterns. Prediction accuracy was quantified. Spatial autocorrelation was detected for both socio-demographic and genetic variables. Augsburg City and eastern suburban areas showed higher H O values. The selected model gave best predictions in suburban areas. Fine-scale patterns of genetic heterogeneity were observed. In accordance to literature, more urbanized areas showed higher levels of admixture. This approach showed efficacy for detecting and analyzing subtle patterns of genetic heterogeneity within small areas. It is scalable in number of loci, even up to whole-genome analysis. It may be suggested that this approach may be applicable to investigate the underlying genetic history that is, at least partially, embedded in geographic data.

  14. The influence of fine-scale habitat features on regional variation in population performance of alpine White-tailed Ptarmigan

    USGS Publications Warehouse

    Fedy, B.; Martin, K.

    2011-01-01

    It is often assumed (explicitly or implicitly) that animals select habitat features to maximize fitness. However, there is often a mismatch between preferred habitats and indices of individual and population measures of performance. We examined the influence of fine-scale habitat selection on the overall population performance of the White-tailed Ptarmigan (Lagopus leucura), an alpine specialist, in two subdivided populations whose habitat patches are configured differently. The central region of Vancouver Island, Canada, has more continuous and larger habitat patches than the southern region. In 2003 and 2004, using paired logistic regression between used (n = 176) and available (n = 324) sites, we identified food availability, distance to standing water, and predator cover as preferred habitat components . We then quantified variation in population performance in the two regions in terms of sex ratio, age structure (n = 182 adults and yearlings), and reproductive success (n = 98 females) on the basis of 8 years of data (1995-1999, 2002-2004). Region strongly influenced females' breeding success, which, unsuccessful hens included, was consistently higher in the central region (n = 77 females) of the island than in the south (n = 21 females, P = 0.01). The central region also had a much higher proportion of successful hens (87%) than did the south (55%, P < 0.001). In light of our findings, we suggest that population performance is influenced by a combination of fine-scale habitat features and coarse-scale habitat configuration. ?? The Cooper Ornithological Society 2011.

  15. Flight paths of seabirds soaring over the ocean surface enable measurement of fine-scale wind speed and direction.

    PubMed

    Yonehara, Yoshinari; Goto, Yusuke; Yoda, Ken; Watanuki, Yutaka; Young, Lindsay C; Weimerskirch, Henri; Bost, Charles-André; Sato, Katsufumi

    2016-08-09

    Ocean surface winds are an essential factor in understanding the physical interactions between the atmosphere and the ocean. Surface winds measured by satellite scatterometers and buoys cover most of the global ocean; however, there are still spatial and temporal gaps and finer-scale variations of wind that may be overlooked, particularly in coastal areas. Here, we show that flight paths of soaring seabirds can be used to estimate fine-scale (every 5 min, ∼5 km) ocean surface winds. Fine-scale global positioning system (GPS) positional data revealed that soaring seabirds flew tortuously and ground speed fluctuated presumably due to tail winds and head winds. Taking advantage of the ground speed difference in relation to flight direction, we reliably estimated wind speed and direction experienced by the birds. These bird-based wind velocities were significantly correlated with wind velocities estimated by satellite-borne scatterometers. Furthermore, extensive travel distances and flight duration of the seabirds enabled a wide range of high-resolution wind observations, especially in coastal areas. Our study suggests that seabirds provide a platform from which to measure ocean surface winds, potentially complementing conventional wind measurements by covering spatial and temporal measurement gaps.

  16. Fine-Scale Habitat Associations of a Terrestrial Salamander: The Role of Environmental Gradients and Implications for Population Dynamics

    PubMed Central

    Peterman, William E.; Semlitsch, Raymond D.

    2013-01-01

    Environmental gradients are instrumental in shaping the distribution and local abundance of species because at the most fundamental level, an organism’s performance is constrained by the environment it inhabits. In topographically complex landscapes, slope, aspect, and vegetative cover interact to affect solar exposure, creating temperature-moisture gradients and unique microclimates. The significance of the interaction of abiotic gradients and biotic factors such as competition, movement, or physiology has long been recognized, but the scale at which these factors vary on the landscape has generally precluded their inclusion in spatial abundance models. We used fine-scale spatial data relating to surface-soil moisture, temperature, and canopy cover to describe the spatial distribution of abundance of a terrestrial salamander, Plethodon albagula, across the landscape. Abundance was greatest in dense-canopy ravine habitats with high moisture and low solar exposure, resulting in a patchy distribution of abundance. We hypothesize that these patterns reflect the physiological constraints of Plethodontid salamanders. Furthermore, demographic cohorts were not uniformly distributed among occupied plots on the landscape. The probability of gravid female occurrence was nearly uniform among occupied plots, but juveniles were much more likely to occur on plots with lower surface temperatures. The disconnect between reproductive effort and recruitment suggests that survival differs across the landscape and that local population dynamics vary spatially. Our study demonstrates a connection between abundance, fine-scale environmental gradients, and population dynamics, providing a foundation for future research concerning movement, population connectivity, and physiology. PMID:23671586

  17. Fine-scale flight strategies of gulls in urban airflows indicate risk and reward in city living.

    PubMed

    Shepard, Emily L C; Williamson, Cara; Windsor, Shane P

    2016-09-26

    Birds modulate their flight paths in relation to regional and global airflows in order to reduce their travel costs. Birds should also respond to fine-scale airflows, although the incidence and value of this remains largely unknown. We resolved the three-dimensional trajectories of gulls flying along a built-up coastline, and used computational fluid dynamic models to examine how gulls reacted to airflows around buildings. Birds systematically altered their flight trajectories with wind conditions to exploit updraughts over features as small as a row of low-rise buildings. This provides the first evidence that human activities can change patterns of space-use in flying birds by altering the profitability of the airscape. At finer scales still, gulls varied their position to select a narrow range of updraught values, rather than exploiting the strongest updraughts available, and their precise positions were consistent with a strategy to increase their velocity control in gusty conditions. Ultimately, strategies such as these could help unmanned aerial vehicles negotiate complex airflows. Overall, airflows around fine-scale features have profound implications for flight control and energy use, and consideration of this could lead to a paradigm-shift in the way ecologists view the urban environment.This article is part of the themed issue 'Moving in a moving medium: new perspectives on flight'.

  18. Fine-scale flight strategies of gulls in urban airflows indicate risk and reward in city living

    PubMed Central

    Shepard, Emily L. C.

    2016-01-01

    Birds modulate their flight paths in relation to regional and global airflows in order to reduce their travel costs. Birds should also respond to fine-scale airflows, although the incidence and value of this remains largely unknown. We resolved the three-dimensional trajectories of gulls flying along a built-up coastline, and used computational fluid dynamic models to examine how gulls reacted to airflows around buildings. Birds systematically altered their flight trajectories with wind conditions to exploit updraughts over features as small as a row of low-rise buildings. This provides the first evidence that human activities can change patterns of space-use in flying birds by altering the profitability of the airscape. At finer scales still, gulls varied their position to select a narrow range of updraught values, rather than exploiting the strongest updraughts available, and their precise positions were consistent with a strategy to increase their velocity control in gusty conditions. Ultimately, strategies such as these could help unmanned aerial vehicles negotiate complex airflows. Overall, airflows around fine-scale features have profound implications for flight control and energy use, and consideration of this could lead to a paradigm-shift in the way ecologists view the urban environment. This article is part of the themed issue ‘Moving in a moving medium: new perspectives on flight’. PMID:27528784

  19. Flight paths of seabirds soaring over the ocean surface enable measurement of fine-scale wind speed and direction

    PubMed Central

    Yonehara, Yoshinari; Goto, Yusuke; Yoda, Ken; Watanuki, Yutaka; Young, Lindsay C.; Weimerskirch, Henri; Bost, Charles-André; Sato, Katsufumi

    2016-01-01

    Ocean surface winds are an essential factor in understanding the physical interactions between the atmosphere and the ocean. Surface winds measured by satellite scatterometers and buoys cover most of the global ocean; however, there are still spatial and temporal gaps and finer-scale variations of wind that may be overlooked, particularly in coastal areas. Here, we show that flight paths of soaring seabirds can be used to estimate fine-scale (every 5 min, ∼5 km) ocean surface winds. Fine-scale global positioning system (GPS) positional data revealed that soaring seabirds flew tortuously and ground speed fluctuated presumably due to tail winds and head winds. Taking advantage of the ground speed difference in relation to flight direction, we reliably estimated wind speed and direction experienced by the birds. These bird-based wind velocities were significantly correlated with wind velocities estimated by satellite-borne scatterometers. Furthermore, extensive travel distances and flight duration of the seabirds enabled a wide range of high-resolution wind observations, especially in coastal areas. Our study suggests that seabirds provide a platform from which to measure ocean surface winds, potentially complementing conventional wind measurements by covering spatial and temporal measurement gaps. PMID:27457932

  20. Fine-scale ecological and economic assessment of climate change on olive in the Mediterranean Basin reveals winners and losers.

    PubMed

    Ponti, Luigi; Gutierrez, Andrew Paul; Ruti, Paolo Michele; Dell'Aquila, Alessandro

    2014-04-15

    The Mediterranean Basin is a climate and biodiversity hot spot, and climate change threatens agro-ecosystems such as olive, an ancient drought-tolerant crop of considerable ecological and socioeconomic importance. Climate change will impact the interactions of olive and the obligate olive fruit fly (Bactrocera oleae), and alter the economics of olive culture across the Basin. We estimate the effects of climate change on the dynamics and interaction of olive and the fly using physiologically based demographic models in a geographic information system context as driven by daily climate change scenario weather. A regional climate model that includes fine-scale representation of the effects of topography and the influence of the Mediterranean Sea on regional climate was used to scale the global climate data. The system model for olive/olive fly was used as the production function in our economic analysis, replacing the commonly used production-damage control function. Climate warming will affect olive yield and fly infestation levels across the Basin, resulting in economic winners and losers at the local and regional scales. At the local scale, profitability of small olive farms in many marginal areas of Europe and elsewhere in the Basin will decrease, leading to increased abandonment. These marginal farms are critical to conserving soil, maintaining biodiversity, and reducing fire risk in these areas. Our fine-scale bioeconomic approach provides a realistic prototype for assessing climate change impacts in other Mediterranean agro-ecosystems facing extant and new invasive pests.

  1. Landscape Management of Fire and Grazing Regimes Alters the Fine-Scale Habitat Utilisation by Feral Cats

    PubMed Central

    McGregor, Hugh W.; Legge, Sarah; Jones, Menna E.; Johnson, Christopher N.

    2014-01-01

    Intensification of fires and grazing by large herbivores has caused population declines in small vertebrates in many ecosystems worldwide. Impacts are rarely direct, and usually appear driven via indirect pathways, such as changes to predator-prey dynamics. Fire events and grazing may improve habitat and/or hunting success for the predators of small mammals, however, such impacts have not been documented. To test for such an interaction, we investigated fine-scale habitat selection by feral cats in relation to fire, grazing and small-mammal abundance. Our study was conducted in north-western Australia, where small mammal populations are sensitive to changes in fire and grazing management. We deployed GPS collars on 32 cats in landscapes with contrasting fire and grazing treatments. Fine-scale habitat selection was determined using discrete choice modelling of cat movements. We found that cats selected areas with open grass cover, including heavily-grazed areas. They strongly selected for areas recently burnt by intense fires, but only in habitats that typically support high abundance of small mammals. Intense fires and grazing by introduced herbivores created conditions that are favoured by cats, probably because their hunting success is improved. This mechanism could explain why, in northern Australia, impacts of feral cats on small mammals might have increased. Our results suggest the impact of feral cats could be reduced in most ecosystems by maximising grass cover, minimising the incidence of intense fires, and reducing grazing by large herbivores. PMID:25329902

  2. Fine-scale spatial genetic structure and clonal distribution of the cold-water coral Lophelia pertusa

    NASA Astrophysics Data System (ADS)

    Dahl, M. P.; Pereyra, R. T.; Lundälv, T.; André, C.

    2012-12-01

    Determining the spatial genetic structure within and among cold-water coral populations is crucial to understanding population dynamics, assessing the resilience of cold-water coral communities and estimating genetic effects of habitat fragmentation for conservation. The spatial distribution of genetic diversity in natural populations depends on the species' mode of reproduction, and coral species often have a mixed strategy of sexual and asexual reproduction. We describe the clonal architecture of a cold-water coral reef and the fine-scale population genetic structure (<35 km) of five reef localities in the NE Skagerrak. This study represents the first of this type of analysis from deep waters. We used thirteen microsatellite loci to estimate gene flow and genotypic diversity and to describe the fine-scale spatial distribution of clonal individuals of Lophelia pertusa. Within-population genetic diversity was high in four of the five reef localities. These four reefs constitute a genetic cluster with asymmetric gene flow that indicates metapopulation dynamics. One locality, the Säcken reef, was genetically isolated and depauperate. Asexual reproduction was found to be a highly important mode of reproduction for L. pertusa: 35 genetic individuals were found on the largest reef, with the largest clone covering an area of nearly 300 m2.

  3. Landscape management of fire and grazing regimes alters the fine-scale habitat utilisation by feral cats.

    PubMed

    McGregor, Hugh W; Legge, Sarah; Jones, Menna E; Johnson, Christopher N

    2014-01-01

    Intensification of fires and grazing by large herbivores has caused population declines in small vertebrates in many ecosystems worldwide. Impacts are rarely direct, and usually appear driven via indirect pathways, such as changes to predator-prey dynamics. Fire events and grazing may improve habitat and/or hunting success for the predators of small mammals, however, such impacts have not been documented. To test for such an interaction, we investigated fine-scale habitat selection by feral cats in relation to fire, grazing and small-mammal abundance. Our study was conducted in north-western Australia, where small mammal populations are sensitive to changes in fire and grazing management. We deployed GPS collars on 32 cats in landscapes with contrasting fire and grazing treatments. Fine-scale habitat selection was determined using discrete choice modelling of cat movements. We found that cats selected areas with open grass cover, including heavily-grazed areas. They strongly selected for areas recently burnt by intense fires, but only in habitats that typically support high abundance of small mammals. Intense fires and grazing by introduced herbivores created conditions that are favoured by cats, probably because their hunting success is improved. This mechanism could explain why, in northern Australia, impacts of feral cats on small mammals might have increased. Our results suggest the impact of feral cats could be reduced in most ecosystems by maximising grass cover, minimising the incidence of intense fires, and reducing grazing by large herbivores.

  4. Fine-scale nutrient and carbonate system dynamics around cold-water coral reefs in the northeast Atlantic

    PubMed Central

    Findlay, Helen S.; Hennige, Sebastian J.; Wicks, Laura C.; Navas, Juan Moreno; Woodward, E. Malcolm S.; Roberts, J. Murray

    2014-01-01

    Ocean acidification has been suggested as a serious threat to the future existence of cold-water corals (CWC). However, there are few fine-scale temporal and spatial datasets of carbonate and nutrients conditions available for these reefs, which can provide a baseline definition of extant conditions. Here we provide observational data from four different sites in the northeast Atlantic that are known habitats for CWC. These habitats differ by depth and by the nature of the coral habitat. At depths where CWC are known to occur across these sites the dissolved inorganic carbon ranged from 2088 to 2186 μmol kg−1, alkalinity ranged from 2299 to 2346 μmol kg−1, and aragonite Ω ranged from 1.35 to 2.44. At two sites fine-scale hydrodynamics caused increased variability in the carbonate and nutrient conditions over daily time-scales. The observed high level of variability must be taken into account when assessing CWC sensitivities to future environmental change. PMID:24441283

  5. Identifying Where REDD+ Financially Out-Competes Oil Palm in Floodplain Landscapes Using a Fine-Scale Approach

    PubMed Central

    MacMillan, Douglas C.; Xofis, Panteleimon; Ancrenaz, Marc; Tzanopoulos, Joseph; Ong, Robert; Goossens, Benoit; Koh, Lian Pin; Del Valle, Christian; Peter, Lucy; Morel, Alexandra C.; Lackman, Isabelle; Chung, Robin; Kler, Harjinder; Ambu, Laurentius; Baya, William; Knight, Andrew T.

    2016-01-01

    Reducing Emissions from Deforestation and forest Degradation (REDD+) aims to avoid forest conversion to alternative land-uses through financial incentives. Oil-palm has high opportunity costs, which according to current literature questions the financial competitiveness of REDD+ in tropical lowlands. To understand this more, we undertook regional fine-scale and coarse-scale analyses (through carbon mapping and economic modelling) to assess the financial viability of REDD+ in safeguarding unprotected forest (30,173 ha) in the Lower Kinabatangan floodplain in Malaysian Borneo. Results estimate 4.7 million metric tons of carbon (MgC) in unprotected forest, with 64% allocated for oil-palm cultivations. Through fine-scale mapping and carbon accounting, we demonstrated that REDD+ can outcompete oil-palm in regions with low suitability, with low carbon prices and low carbon stock. In areas with medium oil-palm suitability, REDD+ could outcompete oil palm in areas with: very high carbon and lower carbon price; medium carbon price and average carbon stock; or, low carbon stock and high carbon price. Areas with high oil palm suitability, REDD+ could only outcompete with higher carbon price and higher carbon stock. In the coarse-scale model, oil-palm outcompeted REDD+ in all cases. For the fine-scale models at the landscape level, low carbon offset prices (US $3 MgCO2e) would enable REDD+ to outcompete oil-palm in 55% of the unprotected forests requiring US $27 million to secure these areas for 25 years. Higher carbon offset price (US $30 MgCO2e) would increase the competitiveness of REDD+ within the landscape but would still only capture between 69%-74% of the unprotected forest, requiring US $380–416 million in carbon financing. REDD+ has been identified as a strategy to mitigate climate change by many countries (including Malaysia). Although REDD+ in certain scenarios cannot outcompete oil palm, this research contributes to the global REDD+ debate by: highlighting REDD

  6. Identifying Where REDD+ Financially Out-Competes Oil Palm in Floodplain Landscapes Using a Fine-Scale Approach.

    PubMed

    Abram, Nicola K; MacMillan, Douglas C; Xofis, Panteleimon; Ancrenaz, Marc; Tzanopoulos, Joseph; Ong, Robert; Goossens, Benoit; Koh, Lian Pin; Del Valle, Christian; Peter, Lucy; Morel, Alexandra C; Lackman, Isabelle; Chung, Robin; Kler, Harjinder; Ambu, Laurentius; Baya, William; Knight, Andrew T

    2016-01-01

    Reducing Emissions from Deforestation and forest Degradation (REDD+) aims to avoid forest conversion to alternative land-uses through financial incentives. Oil-palm has high opportunity costs, which according to current literature questions the financial competitiveness of REDD+ in tropical lowlands. To understand this more, we undertook regional fine-scale and coarse-scale analyses (through carbon mapping and economic modelling) to assess the financial viability of REDD+ in safeguarding unprotected forest (30,173 ha) in the Lower Kinabatangan floodplain in Malaysian Borneo. Results estimate 4.7 million metric tons of carbon (MgC) in unprotected forest, with 64% allocated for oil-palm cultivations. Through fine-scale mapping and carbon accounting, we demonstrated that REDD+ can outcompete oil-palm in regions with low suitability, with low carbon prices and low carbon stock. In areas with medium oil-palm suitability, REDD+ could outcompete oil palm in areas with: very high carbon and lower carbon price; medium carbon price and average carbon stock; or, low carbon stock and high carbon price. Areas with high oil palm suitability, REDD+ could only outcompete with higher carbon price and higher carbon stock. In the coarse-scale model, oil-palm outcompeted REDD+ in all cases. For the fine-scale models at the landscape level, low carbon offset prices (US $3 MgCO2e) would enable REDD+ to outcompete oil-palm in 55% of the unprotected forests requiring US $27 million to secure these areas for 25 years. Higher carbon offset price (US $30 MgCO2e) would increase the competitiveness of REDD+ within the landscape but would still only capture between 69%-74% of the unprotected forest, requiring US $380-416 million in carbon financing. REDD+ has been identified as a strategy to mitigate climate change by many countries (including Malaysia). Although REDD+ in certain scenarios cannot outcompete oil palm, this research contributes to the global REDD+ debate by: highlighting REDD

  7. Fine scale population genetic structure of Varroa destructor, an ectoparasitic mite of the honey bee (Apis mellifera)

    PubMed Central

    Dynes, Travis L.; De Roode, Jacobus C.; Lyons, Justine I.; Berry, Jennifer A.; Delaplane, Keith S.; Brosi, Berry J.

    2016-01-01

    Varroa destructor is an obligate ectoparasitic mite and the most important biotic threat currently facing honey bees (Apis mellifera). We used neutral microsatellites to analyze previously unreported fine scale population structure of V. destructor, a species characterized by extreme lack of genetic diversity owing to multiple bottleneck events, haplodiploidy, and primarily brother-sister matings. Our results surprisingly indicate that detectable hierarchical genetic variation exists between apiaries, between colonies within an apiary, and even within colonies. This finding of within-colony parasite diversity provides empirical evidence that the spread of V. destructor is not accomplished solely by vertical transmission but that horizontal transmission (natural or human-mediated) must occur regularly. PMID:27812229

  8. Fine-scale genetic variation and evolution of West Nile Virus in a transmission "hot spot" in suburban Chicago, USA.

    PubMed

    Bertolotti, Luigi; Kitron, Uriel D; Walker, Edward D; Ruiz, Marilyn O; Brawn, Jeffrey D; Loss, Scott R; Hamer, Gabriel L; Goldberg, Tony L

    2008-05-10

    Mosquitoes and birds were sampled for West Nile virus (WNV) in suburban Chicago, USA, in a "hot spot" of arboviral transmission. Viral genetic diversity within this area was similar to that within Illinois and the United States. Diversity was higher among viruses from mosquitoes than from birds, higher among viruses from birds in urban "green spaces" than from birds in residential areas, but lower among viruses from mosquitoes in green spaces than from mosquitoes in residential areas. Viral transmission was distance-limited, as evidenced by decreasing autocorrelation of WNV sequences with increasing geographic separation. The evolutionary rate of WNV within the study area between 21 July and 4 October 2005 was ten times higher than that for WNV across North America between 2002 and 2005. These results indicate that WNV transmission and evolutionary dynamics can vary seasonally and in response to fine-scale environmental conditions and landscape characteristics related to urbanization.

  9. Adaptive radiation by waves of gene transfer leads to fine-scale resource partitioning in marine microbes

    PubMed Central

    Hehemann, Jan-Hendrik; Arevalo, Philip; Datta, Manoshi S.; Yu, Xiaoqian; Corzett, Christopher H.; Henschel, Andreas; Preheim, Sarah P.; Timberlake, Sonia; Alm, Eric J.; Polz, Martin F.

    2016-01-01

    Adaptive radiations are important drivers of niche filling, since they rapidly adapt a single clade of organisms to ecological opportunities. Although thought to be common for animals and plants, adaptive radiations have remained difficult to document for microbes in the wild. Here we describe a recent adaptive radiation leading to fine-scale ecophysiological differentiation in the degradation of an algal glycan in a clade of closely related marine bacteria. Horizontal gene transfer is the primary driver in the diversification of the pathway leading to several ecophysiologically differentiated Vibrionaceae populations adapted to different physical forms of alginate. Pathway architecture is predictive of function and ecology, underscoring that horizontal gene transfer without extensive regulatory changes can rapidly assemble fully functional pathways in microbes. PMID:27653556

  10. Spatial Heterogeneity in Ecologically Important Climate Variables at Coarse and Fine Scales in a High-Snow Mountain Landscape

    PubMed Central

    Ford, Kevin R.; Ettinger, Ailene K.; Lundquist, Jessica D.; Raleigh, Mark S.; Hille Ris Lambers, Janneke

    2013-01-01

    Climate plays an important role in determining the geographic ranges of species. With rapid climate change expected in the coming decades, ecologists have predicted that species ranges will shift large distances in elevation and latitude. However, most range shift assessments are based on coarse-scale climate models that ignore fine-scale heterogeneity and could fail to capture important range shift dynamics. Moreover, if climate varies dramatically over short distances, some populations of certain species may only need to migrate tens of meters between microhabitats to track their climate as opposed to hundreds of meters upward or hundreds of kilometers poleward. To address these issues, we measured climate variables that are likely important determinants of plant species distributions and abundances (snow disappearance date and soil temperature) at coarse and fine scales at Mount Rainier National Park in Washington State, USA. Coarse-scale differences across the landscape such as large changes in elevation had expected effects on climatic variables, with later snow disappearance dates and lower temperatures at higher elevations. However, locations separated by small distances (∼20 m), but differing by vegetation structure or topographic position, often experienced differences in snow disappearance date and soil temperature as great as locations separated by large distances (>1 km). Tree canopy gaps and topographic depressions experienced later snow disappearance dates than corresponding locations under intact canopy and on ridges. Additionally, locations under vegetation and on topographic ridges experienced lower maximum and higher minimum soil temperatures. The large differences in climate we observed over small distances will likely lead to complex range shift dynamics and could buffer species from the negative effects of climate change. PMID:23762277

  11. Spatial heterogeneity in ecologically important climate variables at coarse and fine scales in a high-snow mountain landscape.

    PubMed

    Ford, Kevin R; Ettinger, Ailene K; Lundquist, Jessica D; Raleigh, Mark S; Hille Ris Lambers, Janneke

    2013-01-01

    Climate plays an important role in determining the geographic ranges of species. With rapid climate change expected in the coming decades, ecologists have predicted that species ranges will shift large distances in elevation and latitude. However, most range shift assessments are based on coarse-scale climate models that ignore fine-scale heterogeneity and could fail to capture important range shift dynamics. Moreover, if climate varies dramatically over short distances, some populations of certain species may only need to migrate tens of meters between microhabitats to track their climate as opposed to hundreds of meters upward or hundreds of kilometers poleward. To address these issues, we measured climate variables that are likely important determinants of plant species distributions and abundances (snow disappearance date and soil temperature) at coarse and fine scales at Mount Rainier National Park in Washington State, USA. Coarse-scale differences across the landscape such as large changes in elevation had expected effects on climatic variables, with later snow disappearance dates and lower temperatures at higher elevations. However, locations separated by small distances (∼20 m), but differing by vegetation structure or topographic position, often experienced differences in snow disappearance date and soil temperature as great as locations separated by large distances (>1 km). Tree canopy gaps and topographic depressions experienced later snow disappearance dates than corresponding locations under intact canopy and on ridges. Additionally, locations under vegetation and on topographic ridges experienced lower maximum and higher minimum soil temperatures. The large differences in climate we observed over small distances will likely lead to complex range shift dynamics and could buffer species from the negative effects of climate change.

  12. Fine-Scale Exposure to Allergenic Pollen in the Urban Environment: Evaluation of Land Use Regression Approach

    PubMed Central

    Hjort, Jan; Hugg, Timo T.; Antikainen, Harri; Rusanen, Jarmo; Sofiev, Mikhail; Kukkonen, Jaakko; Jaakkola, Maritta S.; Jaakkola, Jouni J.K.

    2015-01-01

    Background: Despite the recent developments in physically and chemically based analysis of atmospheric particles, no models exist for resolving the spatial variability of pollen concentration at urban scale. Objectives: We developed a land use regression (LUR) approach for predicting spatial fine-scale allergenic pollen concentrations in the Helsinki metropolitan area, Finland, and evaluated the performance of the models against available empirical data. Methods: We used grass pollen data monitored at 16 sites in an urban area during the peak pollen season and geospatial environmental data. The main statistical method was generalized linear model (GLM). Results: GLM-based LURs explained 79% of the spatial variation in the grass pollen data based on all samples, and 47% of the variation when samples from two sites with very high concentrations were excluded. In model evaluation, prediction errors ranged from 6% to 26% of the observed range of grass pollen concentrations. Our findings support the use of geospatial data–based statistical models to predict the spatial variation of allergenic grass pollen concentrations at intra-urban scales. A remote sensing–based vegetation index was the strongest predictor of pollen concentrations for exposure assessments at local scales. Conclusions: The LUR approach provides new opportunities to estimate the relations between environmental determinants and allergenic pollen concentration in human-modified environments at fine spatial scales. This approach could potentially be applied to estimate retrospectively pollen concentrations to be used for long-term exposure assessments. Citation: Hjort J, Hugg TT, Antikainen H, Rusanen J, Sofiev M, Kukkonen J, Jaakkola MS, Jaakkola JJ. 2016. Fine-scale exposure to allergenic pollen in the urban environment: evaluation of land use regression approach. Environ Health Perspect 124:619–626; http://dx.doi.org/10.1289/ehp.1509761 PMID:26452296

  13. Fine-scale genetic structure and cryptic associations reveal evidence of kin-based sociality in the African forest elephant.

    PubMed

    Schuttler, Stephanie G; Philbrick, Jessica A; Jeffery, Kathryn J; Eggert, Lori S

    2014-01-01

    Spatial patterns of relatedness within animal populations are important in the evolution of mating and social systems, and have the potential to reveal information on species that are difficult to observe in the wild. This study examines the fine-scale genetic structure and connectivity of groups within African forest elephants, Loxodonta cyclotis, which are often difficult to observe due to forest habitat. We tested the hypothesis that genetic similarity will decline with increasing geographic distance, as we expect kin to be in closer proximity, using spatial autocorrelation analyses and Tau K(r) tests. Associations between individuals were investigated through a non-invasive genetic capture-recapture approach using network models, and were predicted to be more extensive than the small groups found in observational studies, similar to fission-fusion sociality found in African savanna (Loxodonta africana) and Asian (Elephas maximus) species. Dung samples were collected in Lopé National Park, Gabon in 2008 and 2010 and genotyped at 10 microsatellite loci, genetically sexed, and sequenced at the mitochondrial DNA control region. We conducted analyses on samples collected at three different temporal scales: a day, within six-day sampling sessions, and within each year. Spatial autocorrelation and Tau K(r) tests revealed genetic structure, but results were weak and inconsistent between sampling sessions. Positive spatial autocorrelation was found in distance classes of 0-5 km, and was strongest for the single day session. Despite weak genetic structure, individuals within groups were significantly more related to each other than to individuals between groups. Social networks revealed some components to have large, extensive groups of up to 22 individuals, and most groups were composed of individuals of the same matriline. Although fine-scale population genetic structure was weak, forest elephants are typically found in groups consisting of kin and based on matrilines

  14. Fine-scale natal homing and localized movement as shaped by sex and spawning habitat in chinook salmon

    USGS Publications Warehouse

    Neville, Helen; Isaak, Daniel; Dunham, J.B.; Thurow, Russel; Rieman, B.

    2006-01-01

    Natal homing is a hallmark of the life history of salmonid fishes, but the spatial scale of homing within local, naturally reproducing salmon populations is still poorly understood. Accurate homing (paired with restricted movement) should lead to the existence of fine-scale genetic structuring due to the spatial clustering of related individuals on spawning grounds. Thus, we explored the spatial resolution of natal homing using genetic associations among individual Chinook salmon (Oncorhynchus tshawytscha) in an interconnected stream network. We also investigated the relationship between genetic patterns and two factors hypothesized to influence natal homing and localized movements at finer scales in this species, localized patterns in the distribution of spawning gravels and sex. Spatial autocorrelation analyses showed that spawning locations in both sub-basins of our study site were spatially clumped, but the upper sub-basin generally had a larger spatial extent and continuity of redd locations than the lower sub-basin, where the distribution of redds and associated habitat conditions were more patchy. Male genotypes were not autocorrelated at any spatial scale in either sub-basin. Female genotypes showed significant spatial autocorrelation and genetic patterns for females varied in the direction predicted between the two sub-basins, with much stronger autocorrelation in the sub-basin with less continuity in spawning gravels. The patterns observed here support predictions about differential constraints and breeding tactics between the two sexes and the potential for fine-scale habitat structure to influence the precision of natal homing and localized movements of individual Chinook salmon on their breeding grounds.

  15. Fine scale patterns in microbial extracellular enzyme activity during leaf litter decomposition in a stream and its floodplain.

    PubMed

    Smart, Kurt A; Jackson, Colin R

    2009-10-01

    Microorganisms mediate the decomposition of leaf-litter through the release of extracellular enzymes. The surfaces of decomposing leaves are both chemically and physically heterogeneous, and spatial patterns in microbial enzyme activity on the litter surface should provide insights into fine-scale patterns of leaf-litter decomposition. Platanus occidentalis leaves were collected from the floodplain of a third-order stream in northern Mississippi, enclosed in individual litter bags, and placed in the stream channel and in the floodplain. Replicate leaves were collected approximately monthly over a 9-month period and assayed for spatial variation in microbial extracellular enzyme activity and rates of organic matter (OM) decomposition. Spatial variation in enzyme activity was measured by sampling 96 small discs (5-mm diameter) cut from each leaf. Discs were assayed for the activity of enzymes involved in lignin (oxidative enzymes) and cellulose (beta-glucosidase, cellobiohydrolase) degradation. Rates of OM loss were greater in the stream than the floodplain. Activities of all enzymes displayed high variability in both environments, with severalfold differences across individual leaves, and replicate leaves varied greatly in their distribution of activities. Geostatistical analysis revealed no clear patterns in spatial distribution of activity over time or among replicates, and replicate leaves were highly variable. These results show that fine-scale spatial heterogeneity occurs on decomposing leaves, but the level of spatial variability varies among individual leaves at the measured spatial scales. This study is the first to use geostatistical analyses to analyze landscape patterns of microbial activity on decomposing leaf litter and in conjunction with studies of the microbial community composition and/or substrate characteristics, should provide key insights into the function of these processes.

  16. Fine-scale population structure and riverscape genetics of brook trout (Salvelinus fontinalis) distributed continuously along headwater channel networks

    USGS Publications Warehouse

    Kanno, Yoichiro; Vokoun, Jason C.; Letcher, Benjamin H.

    2011-01-01

    Linear and heterogeneous habitat makes headwater stream networks an ideal ecosystem in which to test the influence of environmental factors on spatial genetic patterns of obligatory aquatic species. We investigated fine-scale population structure and influence of stream habitat on individual-level genetic differentiation in brook trout (Salvelinus fontinalis) by genotyping eight microsatellite loci in 740 individuals in two headwater channel networks (7.7 and 4.4 km) in Connecticut, USA. A weak but statistically significant isolation-by-distance pattern was common in both sites. In the field, many tagged individuals were recaptured in the same 50-m reaches within a single field season (summer to fall). One study site was characterized with a hierarchical population structure, where seasonal barriers (natural falls of 1.5–2.5 m in height during summer base-flow condition) greatly reduced gene flow and perceptible spatial patterns emerged because of the presence of tributaries, each with a group of genetically distinguishable individuals. Genetic differentiation increased when pairs of individuals were separated by high stream gradient (steep channel slope) or warm stream temperature in this site, although the evidence of their influence was equivocal. In a second site, evidence for genetic clusters was weak at best, but genetic differentiation between individuals was positively correlated with number of tributary confluences. We concluded that the population-level movement of brook trout was limited in the study headwater stream networks, resulting in the fine-scale population structure (genetic clusters and clines) even at distances of a few kilometres, and gene flow was mitigated by ‘riverscape’ variables, particularly by physical barriers, waterway distance (i.e. isolation-by-distance) and the presence of tributaries.

  17. Effects of currents and tides on fine-scale use of marine bird habitats in a Southeast Alaska hotspot

    USGS Publications Warehouse

    Drew, Gary S.; Piatt, John F.; Hill, David J.

    2013-01-01

    Areas with high species richness have become focal points in the establishment of marine protected areas, but an understanding of the factors that support this diversity is still incomplete. In coastal areas, tidal currents—modulated by bathymetry and manifested in variable speeds—are a dominant physical feature of the environment. However, difficulties resolving tidally affected currents and depths at fine spatial-temporal scales have limited our ability to understand their influence the distribution of marine birds. We used a hydrographic model of the water mass in Glacier Bay, Alaska to link depths and current velocities with the locations of 15 common marine bird species observed during fine-scale boat-based surveys of the bay conducted during June of four consecutive years (2000-2003). Marine birds that forage on the bottom tended to occupy shallow habitats with slow-moving currents; mid-water foragers used habitats with intermediate depths and current speeds; and surface-foraging species tended to use habitats with fast-moving, deep waters. Within foraging groups there was variability among species in their use of habitats. While species obligated to foraging near bottom were constrained to use similar types of habitat, species in the mid-water foraging group were associated with a wider range of marine habitat characteristics. Species also showed varying levels of site use depending on tide stage. The dramatic variability in bottom topography—especially the presence of numerous sills, islands, headlands and channels—and large tidal ranges in Glacier Bay create a wide range of current-affected fine-scale foraging habitats that may contribute to the high diversity of marine bird species found there.

  18. Fine scale climatic and soil variability effects on plant species cover along the Front Range of Colorado, USA

    NASA Astrophysics Data System (ADS)

    Cumming, William Frank Preston

    Fine scale studies are rarely performed to address landscape level responses to microclimatic variability. Is it the timing, distribution, and magnitude of soil temperature and moisture that affects what species emerge each season and, in turn, their resilience to fluctuations in microclimate. For this dissertation research, I evaluated the response of vegetation change to microclimatic variability within two communities over a three year period (2009-2012) utilizing 25 meter transects at two locations along the Front Range of Colorado near Boulder, CO and Golden, CO respectively. To assess microclimatic variability, spatial and temporal autocorrelation analyses were performed with soil temperature and moisture. Species cover was assessed along several line transects and correlated with microclimatic variability. Spatial and temporal autocorrelograms are useful tools in identifying the degree of dependency of soil temperature and moisture on the distance and time between pairs of measurements. With this analysis I found that a meter spatial resolution and two-hour measurements are sufficient to capture the fine scale variability in soil properties throughout the year. By comparing this to in situ measurements of soil properties and species percent cover I found that there are several plant functional types and/or species origin in particular that are more sensitive to variations in temperature and moisture than others. When all seasons, locations, correlations, and regional climate are looked at, it is the month of March that stands out in terms of significance. Additionally, of all of the vegetation types represented at these two sites C4, C3, native, non-native, and forb species seem to be the most sensitive to fluctuations in soil temperature, moisture, and regional climate in the spring season. The steady decline in percent species cover the study period and subsequent decrease in percent species cover and size at both locations may indicate that certain are

  19. How Elephant Seals (Mirounga leonina) Adjust Their Fine Scale Horizontal Movement and Diving Behaviour in Relation to Prey Encounter Rate

    PubMed Central

    Jouma’a, Joffrey; Picard, Baptiste; Guinet, Christophe

    2016-01-01

    Understanding the diving behaviour of diving predators in relation to concomitant prey distribution could have major practical applications in conservation biology by allowing the assessment of how changes in fine scale prey distribution impact foraging efficiency and ultimately population dynamics. The southern elephant seal (Mirounga leonina, hereafter SES), the largest phocid, is a major predator of the southern ocean feeding on myctophids and cephalopods. Because of its large size it can carry bio-loggers with minimal disturbance. Moreover, it has great diving abilities and a wide foraging habitat. Thus, the SES is a well suited model species to study predator diving behaviour and the distribution of ecologically important prey species in the Southern Ocean. In this study, we examined how SESs adjust their diving behaviour and horizontal movements in response to fine scale prey encounter densities using high resolution accelerometers, magnetometers, pressure sensors and GPS loggers. When high prey encounter rates were encountered, animals responded by (1) diving and returning to the surface with steeper angles, reducing the duration of transit dive phases (thus improving dive efficiency), and (2) exhibiting more horizontally and vertically sinuous bottom phases. In these cases, the distance travelled horizontally at the surface was reduced. This behaviour is likely to counteract horizontal displacement from water currents, as they try to remain within favourable prey patches. The prey encounter rate at the bottom of dives decreased with increasing diving depth, suggesting a combined effect of decreased accessibility and prey density with increasing depth. Prey encounter rate also decreased when the bottom phases of dives were spread across larger vertical extents of the water column. This result suggests that the vertical aggregation of prey can regulate prey density, and as a consequence impact the foraging success of SESs. To our knowledge, this is one of

  20. Effects of seed bank disturbance on the fine-scale genetic structure of populations of the rare shrub Grevillea macleayana.

    PubMed

    England, P R; Whelan, R J; Ayre, D J

    2003-11-01

    Dispersal in most plants is mediated by the movement of seeds and pollen, which move genes across the landscape differently. Grevillea macleayana is a rare, fire-dependent Australian shrub with large seeds lacking adaptations for dispersal; yet it produces inflorescences adapted to pollination by highly mobile vertebrates (eg birds). Interpreting fine-scale genetic structure in the light of these two processes is confounded by the recent imposition of anthropogenic disturbances with potentially contrasting genetic consequences: (1) the unusual foraging behaviour of exotic honeybees and 2. widespread disturbance of the soil-stored seedbank by road building and quarrying. To test for evidence of fine-scale genetic structure within G. macleayana populations and to test the prediction that such structure might be masked by disturbance of the seed bank, we sampled two sites in undisturbed habitat and compared their genetic structure with two sites that had been strongly affected by road building using a test for spatial autocorrelation of genotypes. High selfing levels inferred from genotypes at all four sites implies that pollen dispersal is limited. Consistent with this, we observed substantial spatial clustering of genes at 10 m or less in the two undisturbed populations and argue that this reflects the predicted effects of both high selfing levels and limited seed dispersal. In contrast, at the two sites disturbed by road building, spatial autocorrelation was weak. This suggests there has been mixing of the seed bank, counteracting the naturally low dispersal and elevated selfing due to honeybees. Pollination between near neighbours with reduced relatedness potentially has fitness consequences for G. macleayana in disturbed sites.

  1. Fine-scale mapping of vector habitats using very high resolution satellite imagery: a liver fluke case-study.

    PubMed

    De Roeck, Els; Van Coillie, Frieke; De Wulf, Robert; Soenen, Karen; Charlier, Johannes; Vercruysse, Jozef; Hantson, Wouter; Ducheyne, Els; Hendrickx, Guy

    2014-12-01

    The visualization of vector occurrence in space and time is an important aspect of studying vector-borne diseases. Detailed maps of possible vector habitats provide valuable information for the prediction of infection risk zones but are currently lacking for most parts of the world. Nonetheless, monitoring vector habitats from the finest scales up to farm level is of key importance to refine currently existing broad-scale infection risk models. Using Fasciola hepatica, a parasite liver fluke, as a case in point, this study illustrates the potential of very high resolution (VHR) optical satellite imagery to efficiently and semi-automatically detect detailed vector habitats. A WorldView2 satellite image capable of <5m resolution was acquired in the spring of 2013 for the area around Bruges, Belgium, a region where dairy farms suffer from liver fluke infections transmitted by freshwater snails. The vector thrives in small water bodies (SWBs), such as ponds, ditches and other humid areas consisting of open water, aquatic vegetation and/or inundated grass. These water bodies can be as small as a few m2 and are most often not present on existing land cover maps because of their small size. We present a classification procedure based on object-based image analysis (OBIA) that proved valuable to detect SWBs at a fine scale in an operational and semi-automated way. The classification results were compared to field and other reference data such as existing broad-scale maps and expert knowledge. Overall, the SWB detection accuracy reached up to 87%. The resulting fine-scale SWB map can be used as input for spatial distribution modelling of the liver fluke snail vector to enable development of improved infection risk mapping and management advice adapted to specific, local farm situations.

  2. Frequency-dependent oscillatory neural profiles during imitation.

    PubMed

    Sugata, Hisato; Hirata, Masayuki; Tamura, Yuichi; Onishi, Hisao; Goto, Tetsu; Araki, Toshihiko; Yorifuji, Shiro

    2017-04-10

    Imitation is a complex process that includes higher-order cognitive and motor function. This process requires an observation-execution matching system that transforms an observed action into an identical movement. Although the low-gamma band is thought to reflect higher cognitive processes, no studies have focused on it. Here, we used magnetoencephalography (MEG) to examine the neural oscillatory changes including the low-gamma band during imitation. Twelve healthy, right-handed participants performed a finger task consisting of four conditions (imitation, execution, observation, and rest). During the imitation and execution conditions, significant event-related desynchronizations (ERDs) were observed at the left frontal, central, and parietal MEG sensors in the alpha, beta, and low-gamma bands. Functional connectivity analysis at the sensor level revealed an imitation-related connectivity between a group of frontal sensors and a group of parietal sensors in the low-gamma band. Furthermore, source reconstruction with synthetic aperture magnetometry showed significant ERDs in the low-gamma band in the left sensorimotor area and the middle frontal gyrus (MFG) during the imitation condition when compared with the other three conditions. Our results suggest that the oscillatory neural activities of the low-gamma band at the sensorimotor area and MFG play an important role in the observation-execution matching system related to imitation.

  3. Frequency-dependent oscillatory neural profiles during imitation

    PubMed Central

    Sugata, Hisato; Hirata, Masayuki; Tamura, Yuichi; Onishi, Hisao; Goto, Tetsu; Araki, Toshihiko; Yorifuji, Shiro

    2017-01-01

    Imitation is a complex process that includes higher-order cognitive and motor function. This process requires an observation-execution matching system that transforms an observed action into an identical movement. Although the low-gamma band is thought to reflect higher cognitive processes, no studies have focused on it. Here, we used magnetoencephalography (MEG) to examine the neural oscillatory changes including the low-gamma band during imitation. Twelve healthy, right-handed participants performed a finger task consisting of four conditions (imitation, execution, observation, and rest). During the imitation and execution conditions, significant event-related desynchronizations (ERDs) were observed at the left frontal, central, and parietal MEG sensors in the alpha, beta, and low-gamma bands. Functional connectivity analysis at the sensor level revealed an imitation-related connectivity between a group of frontal sensors and a group of parietal sensors in the low-gamma band. Furthermore, source reconstruction with synthetic aperture magnetometry showed significant ERDs in the low-gamma band in the left sensorimotor area and the middle frontal gyrus (MFG) during the imitation condition when compared with the other three conditions. Our results suggest that the oscillatory neural activities of the low-gamma band at the sensorimotor area and MFG play an important role in the observation-execution matching system related to imitation. PMID:28393878

  4. Observability of fine-scale ocean dynamics in the northwestern Mediterranean Sea

    NASA Astrophysics Data System (ADS)

    Morrow, Rosemary; Carret, Alice; Birol, Florence; Nino, Fernando; Valladeau, Guillaume; Boy, Francois; Bachelier, Celine; Zakardjian, Bruno

    2017-01-01

    band.

  5. Cortico-pallidal oscillatory connectivity in patients with dystonia.

    PubMed

    Neumann, Wolf-Julian; Jha, Ashwani; Bock, Antje; Huebl, Julius; Horn, Andreas; Schneider, Gerd-Helge; Sander, Tillmann H; Litvak, Vladimir; Kühn, Andrea A

    2015-07-01

    Primary dystonia has been associated with an underlying dysfunction of a wide network of brain regions including the motor cortex, basal ganglia, cerebellum, brainstem and spinal cord. Dystonia can be effectively treated by pallidal deep brain stimulation although the mechanism of this effect is not well understood. Here, we sought to characterize cortico-basal ganglia functional connectivity using a frequency-specific measure of connectivity-coherence. We recorded direct local field potentials from the human pallidum simultaneously with whole head magnetoencephalography to characterize functional connectivity in the cortico-pallidal oscillatory network in nine patients with idiopathic dystonia. Three-dimensional cortico-pallidal coherence images were compared to surrogate images of phase shuffled data across patients to reveal clusters of significant coherence (family-wise error P < 0.01, voxel extent 1000). Three frequency-specific, spatially-distinct cortico-pallidal networks have been identified: a pallido-temporal source of theta band (4-8 Hz) coherence, a pallido-cerebellar source of alpha band (7-13 Hz) coherence and a cortico-pallidal source of beta band (13-30 Hz) coherence over sensorimotor areas. Granger-based directionality analysis revealed directional coupling with the pallidal local field potentials leading in the theta and alpha band and the magnetoencephalographic cortical source leading in the beta band. The degree of pallido-cerebellar coupling showed an inverse correlation with dystonic symptom severity. Our data extend previous findings in patients with Parkinson's disease describing motor cortex-basal ganglia oscillatory connectivity in the beta band to patients with dystonia. Source coherence analysis revealed two additional frequency-specific networks involving the temporal cortex and the cerebellum. Pallido-cerebellar oscillatory connectivity and its association with dystonic symptoms provides further confirmation of cerebellar involvement

  6. Microscale mapping of oscillatory flows

    NASA Astrophysics Data System (ADS)

    Nedev, Spas; Carretero-Palacios, S.; Kirchner, S. R.; Jäckel, F.; Feldmann, J.

    2014-10-01

    We present an optofluidic method that allows the two-dimensional vectorial near-field mapping of oscillatory flows with micron-scale resolution. An oscillatory flow created by a microsource (an optically trapped silica particle set to oscillate in a dipole-type mode) is detected by another twin silica particle independently trapped and located in the vicinity of the source. Fourier analysis of the motion of the detecting particle at different points in space and time renders the vectorial velocity map around the oscillating microsphere. The method introduced here paves the way for in-situ characterization of fast mixing microscale devices and for new detection methods able to provide location and recognition (due to the field pattern) of moving sources that may be applied to both artificial and living microobjects, including macromolecules, cells, and microorganisms.

  7. Oscillatory phase shapes syllable perception

    PubMed Central

    ten Oever, Sanne; Sack, Alexander T.

    2015-01-01

    The role of oscillatory phase for perceptual and cognitive processes is being increasingly acknowledged. To date, little is known about the direct role of phase in categorical perception. Here we show in two separate experiments that the identification of ambiguous syllables that can either be perceived as /da/ or /ga/ is biased by the underlying oscillatory phase as measured with EEG and sensory entrainment to rhythmic stimuli. The measured phase difference in which perception is biased toward /da/ or /ga/ exactly matched the different temporal onset delays in natural audiovisual speech between mouth movements and speech sounds, which last 80 ms longer for /ga/ than for /da/. These results indicate the functional relationship between prestimulus phase and syllable identification, and signify that the origin of this phase relationship could lie in exposure and subsequent learning of unique audiovisual temporal onset differences. PMID:26668393

  8. Regulation of yeast oscillatory dynamics

    PubMed Central

    Murray, Douglas B.; Beckmann, Manfred; Kitano, Hiroaki

    2007-01-01

    When yeast cells are grown continuously at high cell density, a respiratory oscillation percolates throughout the population. Many essential cellular functions have been shown to be separated temporally during each cycle; however, the regulatory mechanisms involved in oscillatory dynamics remain to be elucidated. Through GC-MS analysis we found that the majority of metabolites show oscillatory dynamics, with 70% of the identified metabolite concentrations peaking in conjunction with NAD(P)H. Through statistical analyses of microarray data, we identified that biosynthetic events have a defined order, and this program is initiated when respiration rates are increasing. We then combined metabolic, transcriptional data and statistical analyses of transcription factor activity, identified the top oscillatory parameters, and filtered a large-scale yeast interaction network according to these parameters. The analyses and controlled experimental perturbation provided evidence that a transcriptional complex formed part of the timing circuit for biosynthetic, reductive, and cell cycle programs in the cell. This circuitry does not act in isolation because both have strong translational, proteomic, and metabolic regulatory mechanisms. Our data lead us to conclude that the regulation of the respiratory oscillation revolves around coupled subgraphs containing large numbers of proteins and metabolites, with a potential to oscillate, and no definable hierarchy, i.e., heterarchical control. PMID:17284613

  9. Multiphase patterns in periodically forced oscillatory systems

    SciTech Connect

    Elphick, C.; Hagberg, A.; Meron, E.

    1999-05-01

    Periodic forcing of an oscillatory system produces frequency locking bands within which the system frequency is rationally related to the forcing frequency. We study extended oscillatory systems that respond to uniform periodic forcing at one quarter of the forcing frequency (the 4:1 resonance). These systems possess four coexisting stable states, corresponding to uniform oscillations with successive phase shifts of {pi}/2. Using an amplitude equation approach near a Hopf bifurcation to uniform oscillations, we study front solutions connecting different phase states. These solutions divide into two groups: {pi} fronts separating states with a phase shift of {pi} and {pi}/2 fronts separating states with a phase shift of {pi}/2. We find a type of front instability where a stationary {pi} front {open_quotes}decomposes{close_quotes} into a pair of traveling {pi}/2 fronts as the forcing strength is decreased. The instability is degenerate for an amplitude equation with cubic nonlinearities. At the instability point a continuous family of pair solutions exists, consisting of {pi}/2 fronts separated by distances ranging from zero to infinity. Quintic nonlinearities lift the degeneracy at the instability point but do not change the basic nature of the instability. We conjecture the existence of similar instabilities in higher 2n:1 resonances (n=3,4,{hor_ellipsis}) where stationary {pi} fronts decompose into {ital n} traveling {pi}/n fronts. The instabilities designate transitions from stationary two-phase patterns to traveling 2n-phase patterns. As an example, we demonstrate with a numerical solution the collapse of a four-phase spiral wave into a stationary two-phase pattern as the forcing strength within the 4:1 resonance is increased. {copyright} {ital 1999} {ital The American Physical Society}

  10. Computer-assisted experiments with oscillatory circuits

    NASA Astrophysics Data System (ADS)

    Fernandes, J. C.; Ferraz, A.; Rogalski, M. S.

    2010-03-01

    A basic setup for data acquisition and analysis from an oscillatory circuit is described, with focus on its application as either low-pass, high-pass, band-pass or band-reject frequency filter. A homemade board containing the RLC elements allows for the interchange of some of them, in particular, for the easy change of the R value, and this makes apparent for the student its influence on the damping factor. The function generator operates in the swap frequency mode over a suitable frequency range and all the circuit parameters are chosen to provide a reasonable set of data for all the electronic filters studied. The output data are acquired through a commercially available DAQ board and data analysis is performed using a graphing and fitting workspace. The main objective is to develop a methodology of teaching the laboratory material through a computer-based environment devised to help students to appreciate how the governing equations work and to visualize their practical applications.

  11. Interaction between fine-scale landforms and vegetation patterns in alkali landscapes - case study based on remotely sensed data

    NASA Astrophysics Data System (ADS)

    Deák, Balázs; Valkó, Orsolya; Tóthmérész, Béla; Alexander, Cici; Mücke, Werner; Kania, Adam; Tamás, János; Heilmeier, Hermann

    2015-04-01

    Vertical position is an important driver of vegetation zonation at multiple scales, via determining abiotic environmental parameters like climate, soil properties and water balance. Despite small-scale elevation differences are proven to significantly influence soil salt content and water balance; relationships between elevation and vegetation types are rarely studied in inland alkali landscapes. Alkali landscapes of the Pannonian biogeographical region comprise the most connected salt-affected landscape in continental Europe which provides unique opportunities for studying elevation-vegetation relationships. For linking elevation data with vegetation patterns, remote sensing techniques offer a vital solution. Application of airborne laser scanning is a feasible tool for providing an elevation model of extent areas. Our goal was to test the correlation between fine-scale differences in vertical position and vegetation patterns in inland alkali landscapes by using field vegetation data and elevation data generated using airborne laser scanning. We studied whether the vertical position influences vegetation patterns at the level of main vegetation categories or even at the level of associations. Our study sites were situated in a lowland alkali landscape in Hortobágy National Park (East-Hungary). Associations of the study site can be grouped into four main vegetation categories: (i) loess grasslands, (ii) alkali steppes, (iii) open alkali swards and (iv) alkali meadows. Even though we detected a very limited range in the vertical position (121 cm) of the main vegetation categories; they were well separated along their vertical positions. The detected elevation gradient likely corresponds to environmental gradients (soil type, salt accumulation and water balance). At the level of association types, a more detailed elevation-based distinction was also possible in many cases. Based on the digital terrain model, we revealed a fine-scale vertical vegetation gradient. Our

  12. The fine-scale remobilization of metals in the surface sediment of the North-East Atlantic

    NASA Astrophysics Data System (ADS)

    Fones, Gary R.; Davison, William; Hamilton-Taylor, John

    2004-08-01

    Vertical profiles of trace metals were measured at 1-mm intervals by deploying DGT probes in sediment cores collected from the deep Atlantic Ocean (Feni Drift) before and after the spring phytoplankton bloom. DGT (diffusive gradients in thin-films) accumulates metals on a chelating resin after their diffusive transport through a layer of hydrogel. The mean concentration of metal in the porewaters at the surface of the device during its deployment was derived from the measured mass of metal. Well-defined laboratory systems were used to establish the reproducibility and accuracy of the DGT technique for measuring metals at 1-mm intervals. The Fe and Mn profiles showed the expected redox sequence with depth, with additional fine-scale (2-5 mm) features. The close correspondence between the Mn and Co profiles, on both coarse and fine scales, showed that their chemistry is closely coupled in sediments as well as water columns. Changes in the background concentrations of Cd, Cu, Ni and Zn with depth were well correlated with Mn and Co, but the four metals also displayed mm-scale maxima that were largely independent of Mn, Co or Fe. Two-dimensional measurements at a 100- μm resolution on a DGT probe, deployed in situ with an autonomous lander, showed that the maxima were most likely associated with near-spherical, highly localised sources. The results were consistent with release of Cd, Cu, Ni and Zn from organic and planktonic skeletal material. Where there was associated release of Mn and/or Fe, through their oxides acting as electron acceptors in the decomposition of the organic matter, trace metals could also be supplied by release from the oxides. The microniches responsible for high local concentrations of metals in the porewaters were hypothesised to be due to downward mixing of material by burrowing organisms, known to be prevalent in these sediments. Much of this material appeared to be present as faecal pellets of various origins, with sizes in the range of 50

  13. Fine-scale spatial structure of the exploited infaunal bivalve Cerastoderma edule on the French Atlantic coast

    NASA Astrophysics Data System (ADS)

    Boldina, Inna; Beninger, Peter G.

    2013-02-01

    Investigations of biomass, production, and anthropogenic impact require knowledge of the spatial distribution of the species concerned. Studies of the spatial distribution of soft-sediment infauna are inherently difficult, because the organisms are generally not readily visible, necessitating painstaking excavation. Although the large-scale (tens of km) distribution patterns of infaunal bivalves have been studied previously, the fine-scale (1 to tens of meters) has received much less attention. We investigated the fine-scale spatial distribution of the edible cockle Cerastoderma edule at a fishing-impacted site and a non-impacted site on an intertidal mudflat in Bourgneuf Bay, France, in 2009-2010. A preliminary study using a 1 m spatial lag was performed to determine the optimum lags for a nested sampling design. Cohorts were identified using Bhattacharya-resolved size-frequency distributions and verification of isotropy, and the spatial characteristics of each cohort were determined using Moran's I auto-correlation coefficient. The non-impacted site presented one strongly-aggregated main cohort, C3, (Moran's I = 0.67 to - 0.34, spatial range 16 to 20 m, inter-patch distance 41 to 51 m). The impacted site presented two main cohorts, C2 (1.31 cm mean shell length, SL) and C3 (2.11 cm SL) both of which also showed a patchy spatial distribution (C2: Moran's I = 0.7 to - 0.72, spatial range 22 to 35 m; inter-patch distance 63 to 90 m; C3: Moran's I = 0.41 to - 0.63, spatial range 36 to 58 m, inter-patch distance not defined). The C3 cohort was less aggregated than the C2; possibly due to the homogenizing effect of fishing, which typically proceeds via a Lévy walk foraging model. Our results show that the spatial distributions of C. edule retained a strongly aggregated character over the 8 months of the study, suggesting that these characteristics are powerfully maintained by recruitment/post-recruitment processes, despite intense fishing pressure throughout the

  14. Effect of fine scale microstructure and inclusions on the toughness of ultra high strength low alloy medium carbon steels

    NASA Astrophysics Data System (ADS)

    Choudhary, Pranay

    When fracture is due to micro-void coalescence the toughness of ultra high strength steels is determined by the nature of the inclusions in the steel and by the fine-scale microstructure of the steel. It has been previously shown for the steels HY180 (0.1 wt.% carbon) and AF1410 (0.16 wt.% carbon) that one can improve toughness by increasing inclusion spacing through the use of rare-earths and similarly increase toughness by having inclusion types that are resistant to void nucleation though the use of titanium additions. The purpose of this work has been to determine the extent to which rare-earth additions and titanium additions can be used to control inclusion characteristics and improve the toughness of ultra high strength low alloy steels such as 4340 (0.4 wt.% carbon) and 300M. Because silicon additions on the order of 2 wt.% can be used to increase the strength of 0.4 wt.% carbon low-alloy steels without resorting to increased carbon levels, this work also examined the degree to which silicon content influences the inclusion distributions when rare-earth additions or titanium additions are used to modify inclusion type. Two separate low-alloy systems, 4340 and Base+Ni+Si series alloys were investigated. Extensive mechanical testing was performed by tensile testing, plane strain fracture toughness tests and Charpy impact toughness tests. True stress-true strain curves were obtained by applying the method of Bridgman. The inclusion analysis of the micrographs obtained using SEM was used to obtain the average inclusion radius, inclusion volume fraction and inclusion spacing. Void nucleation curves were obtained to characterize the strain at which inclusions first nucleate voids. Subsequently the critical interfacial stress at which these inclusions nucleate voids was also obtained. The retained austenite content was measured using X-Ray diffraction while analysis of thin foils and extraction replicas was performed using Transmission Electron Microscopy (TEM

  15. Using fine-scale fuel measurements to assess wildland fuels, potential fire behavior and hazard mitigation treatments in the southeastern USA.

    SciTech Connect

    Ottmar, Roger, D.; Blake, John, I.; Crolly, William, T.

    2012-01-01

    The inherent spatial and temporal heterogeneity of fuelbeds in forests of the southeastern United States may require fine scale fuel measurements for providing reliable fire hazard and fuel treatment effectiveness estimates. In a series of five papers, an intensive, fine scale fuel inventory from the Savanna River Site in the southeastern United States is used for building fuelbeds and mapping fire behavior potential, evaluating fuel treatment options for effectiveness, and providing a comparative analysis of landscape modeled fire behavior using three different data sources including the Fuel Characteristic Classification System, LANDFIRE, and the Southern Wildfire Risk Assessment. The research demonstrates that fine scale fuel measurements associated with fuel inventories repeated over time can be used to assess broad scale wildland fire potential and hazard mitigation treatment effectiveness in the southeastern USA and similar fire prone regions. Additional investigations will be needed to modify and improve these processes and capture the true potential of these fine scale data sets for fire and fuel management planning.

  16. Fine-scale population structure of Malays in Peninsular Malaysia and Singapore and implications for association studies.

    PubMed

    Hoh, Boon-Peng; Deng, Lian; Julia-Ashazila, Mat Jusoh; Zuraihan, Zakaria; Nur-Hasnah, Ma'amor; Nur-Shafawati, Ab Rajab; Hatin, Wan Isa; Endom, Ismail; Zilfalil, Bin Alwi; Khalid, Yusoff; Xu, Shuhua

    2015-07-22

    Fine scale population structure of Malays - the major population in Malaysia, has not been well studied. This may have important implications for both evolutionary and medical studies. Here, we investigated the population sub-structure of Malay involving 431 samples collected from all states from peninsular Malaysia and Singapore. We identified two major clusters of individuals corresponding to the north and south peninsular Malaysia. On an even finer scale, the genetic coordinates of the geographical Malay populations are in correlation with the latitudes (R(2) = 0.3925; P = 0.029). This finding is further supported by the pairwise FST of Malay sub-populations, of which the north and south regions showed the highest differentiation (FST [North-south] = 0.0011). The collective findings therefore suggest that population sub-structure of Malays are more heterogenous than previously expected even within a small geographical region, possibly due to factors like different genetic origins, geographical isolation, could result in spurious association as demonstrated in our analysis. We suggest that cautions should be taken during the stage of study design or interpreting the association signals in disease mapping studies which are expected to be conducted in Malay population in the near future.

  17. Mother–offspring distances reflect sex differences in fine-scale genetic structure of eastern grey kangaroos

    PubMed Central

    King, Wendy J; Garant, Dany; Festa-Bianchet, Marco

    2015-01-01

    Natal dispersal affects life history and population biology and causes gene flow. In mammals, dispersal is usually male-biased so that females tend to be philopatric and surrounded by matrilineal kin, which may lead to preferential associations among female kin. Here we combine genetic analyses and behavioral observations to investigate spatial genetic structure and sex-biased dispersal patterns in a high-density population of mammals showing fission–fusion group dynamics. We studied eastern grey kangaroos (Macropus giganteus) over 2 years at Wilsons Promontory National Park, Australia, and found weak fine-scale genetic structure among adult females in both years but no structure among adult males. Immature male kangaroos moved away from their mothers at 18–25 months of age, while immature females remained near their mothers until older. A higher proportion of male (34%) than female (6%) subadults and young adults were observed to disperse, although median distances of detected dispersals were similar for both sexes. Adult females had overlapping ranges that were far wider than the maximum extent of spatial genetic structure found. Female kangaroos, although weakly philopatric, mostly encounter nonrelatives in fission–fusion groups at high density, and therefore kinship is unlikely to strongly affect sociality. PMID:26045958

  18. RAD sequencing resolves fine-scale population structure in a benthic invertebrate: implications for understanding phenotypic plasticity

    PubMed Central

    Weigand, Hannah; Weiss, Martina; Fawcett, Katie; Lehman, Katrin; Clark, M. S.; Leese, Florian; McMinn, Carrie; Moore, Heather; Hoffman, Joseph I.

    2017-01-01

    The field of molecular ecology is transitioning from the use of small panels of classical genetic markers such as microsatellites to much larger panels of single nucleotide polymorphisms (SNPs) generated by approaches like RAD sequencing. However, few empirical studies have directly compared the ability of these methods to resolve population structure. This could have implications for understanding phenotypic plasticity, as many previous studies of natural populations may have lacked the power to detect genetic differences, especially over micro-geographic scales. We therefore compared the ability of microsatellites and RAD sequencing to resolve fine-scale population structure in a commercially important benthic invertebrate by genotyping great scallops (Pecten maximus) from nine populations around Northern Ireland at 13 microsatellites and 10 539 SNPs. The shells were then subjected to morphometric and colour analysis in order to compare patterns of phenotypic and genetic variation. We found that RAD sequencing was superior at resolving population structure, yielding higher Fst values and support for two distinct genetic clusters, whereas only one cluster could be detected in a Bayesian analysis of the microsatellite dataset. Furthermore, appreciable phenotypic variation was observed in size-independent shell shape and coloration, including among localities that could not be distinguished from one another genetically, providing support for the notion that these traits are phenotypically plastic. Taken together, our results suggest that RAD sequencing is a powerful approach for studying population structure and phenotypic plasticity in natural populations. PMID:28386419

  19. Fine-Scale Ecological and Genetic Population Structure of Two Whitefish (Coregoninae) Species in the Vicinity of Industrial Thermal Emissions

    PubMed Central

    Graham, Carly F.; Eberts, Rebecca L.; Morgan, Thomas D.; Boreham, Douglas R.; Lance, Stacey L.; Manzon, Richard G.; Martino, Jessica A.; Rogers, Sean M.; Wilson, Joanna Y.; Somers, Christopher M.

    2016-01-01

    Thermal pollution from industrial processes can have negative impacts on the spawning and development of cold-water fish. Point sources of thermal effluent may need to be managed to avoid affecting discrete populations. Correspondingly, we examined fine-scale ecological and genetic population structure of two whitefish species (Coregonus clupeaformis and Prosopium cylindraceum) on Lake Huron, Canada, in the immediate vicinity of thermal effluent from nuclear power generation. Niche metrics using δ13C and δ15N stable isotopes showed high levels of overlap (48.6 to 94.5%) in resource use by adult fish captured in areas affected by thermal effluent compared to nearby reference locations. Isotopic niche size, a metric of resource use diversity, was 1.3- to 2.8-fold higher than reference values in some thermally affected areas, indicative of fish mixing. Microsatellite analyses of genetic population structure (Fst, STRUCTURE and DAPC) indicated that fish captured at all locations in the vicinity of the power plant were part of a larger population extending beyond the study area. In concert, ecological and genetic markers do not support the presence of an evolutionarily significant unit in the vicinity of the power plant. Thus, future research should focus on the potential impacts of thermal emissions on development and recruitment. PMID:26807722

  20. Fine-scale spatial genetic structure analysis of the black truffle Tuber aestivum and its link to aroma variability.

    PubMed

    Molinier, Virginie; Murat, Claude; Frochot, Henri; Wipf, Daniel; Splivallo, Richard

    2015-08-01

    Truffles are symbiotic fungi in high demand by food connoisseurs. Improving yield and product quality requires a better understanding of truffle genetics and aroma biosynthesis. One aim here was to investigate the diversity and fine-scale spatial genetic structure of the Burgundy truffle Tuber aestivum. The second aim was to assess how genetic structuring along with fruiting body maturation and geographical origin influenced single constituents of truffle aroma. A total of 39 Burgundy truffles collected in two orchards were characterized in terms of aroma profile (SPME-GC/MS) and genotype (microsatellites). A moderate genetic differentiation was observed between the populations of the two orchards. An important seasonal and spatial genetic structuring was detected. Within one orchard, individuals belonging to the same genet were generally collected during a single season and in the close vicinity from each other. Maximum genet size nevertheless ranged from 46 to 92 m. Geographical origin or maturity only had minor effects on aroma profiles but genetic structuring, specifically clonal identity, had a pronounced influence on the concentrations of C8 - and C4 -VOCs. Our results highlight a high seasonal genetic turnover and indicate that the aroma of Burgundy truffle is influenced by the identity of single clones/genets.

  1. Fine-Scale Heterogeneity in Crossover Rate in the garnet-scalloped Region of the Drosophila melanogaster X Chromosome

    PubMed Central

    Singh, Nadia D.; Stone, Eric A.; Aquadro, Charles F.; Clark, Andrew G.

    2013-01-01

    Homologous recombination affects myriad aspects of genome evolution, from standing levels of nucleotide diversity to the efficacy of natural selection. Rates of crossing over show marked variability at all scales surveyed, including species-, population-, and individual-level differences. Even within genomes, crossovers are nonrandomly distributed in a wide diversity of taxa. Although intra- and intergenomic heterogeneities in crossover distribution have been documented in Drosophila, the scale and degree of crossover rate heterogeneity remain unclear. In addition, the genetic features mediating this heterogeneity are unknown. Here we quantify fine-scale heterogeneity in crossover distribution in a 2.1-Mb region of the Drosophila melanogaster X chromosome by localizing crossover breakpoints in 2500 individuals, each containing a single crossover in this specific X chromosome region. We show 90-fold variation in rates of crossing over at a 5-kb scale, place this variation in the context of several aspects of genome evolution, and identify several genetic features associated with crossover rates. Our results shed new light on the scale and magnitude of crossover rate heterogeneity in D. melanogaster and highlight potential features mediating this heterogeneity. PMID:23410829

  2. Fine-scale kin recognition in the absence of social familiarity in the Siberian jay, a monogamous bird species.

    PubMed

    Griesser, Michael; Halvarsson, Peter; Drobniak, Szymon M; Vilà, Carles

    2015-11-01

    Kin recognition is a critical element to kin cooperation, and in vertebrates, it is primarily based on associative learning. Recognition of socially unfamiliar kin occurs rarely, and it is reported only in vertebrate species where promiscuity prevents recognition of first-order relatives. However, it is unknown whether the recognition of socially unfamiliar kin can evolve in monogamous species. Here, we investigate whether genetic relatedness modulates aggression among group members in Siberian jays (Perisoreus infaustus). This bird species is genetically and socially monogamous and lives in groups that are formed through the retention of offspring beyond independence, and the immigration of socially unfamiliar nonbreeders. Observations on feeders showed that genetic relatedness modulated aggression of breeders towards immigrants in a graded manner, in that they chased most intensely the immigrant group members that were genetically the least related. However, cross-fostering experiments showed that breeders were equally tolerant towards their own and cross-fostered young swapped as nestlings. Thus, breeders seem to use different mechanisms to recognize socially unfamiliar individuals and own offspring. As Siberian jays show a high degree of nepotism during foraging and predator encounters, inclusive fitness benefits may play a role for the evolution of fine-scale kin recognition. More generally, our results suggest that fine-graded kin recognition can evolve independently of social familiarity, highlighting the evolutionary importance of kin recognition for social species.

  3. The Fate of Priority Areas for Conservation in Protected Areas: A Fine-Scale Markov Chain Approach

    NASA Astrophysics Data System (ADS)

    Tattoni, Clara; Ciolli, Marco; Ferretti, Fabrizio

    2011-02-01

    Park managers in alpine areas must deal with the increase in forest coverage that has been observed in most European mountain areas, where traditional farming and agricultural practices have been abandoned. The aim of this study is to develop a fine-scale model of a broad area to support the managers of Paneveggio Nature Park (Italy) in conservation planning by focusing on the fate of priority areas for conservation in the next 50-100 years. GIS analyses were performed to assess the afforestation dynamic over time using two historical maps (from 1859 and 1936) and a series of aerial photographs and ortho-photos (taken from 1954 to 2006) covering a time span of 150 years. The results show an increase in the forest surface area of about 35%. Additionally, the forest became progressively more compact and less fragmented, with a consequent loss of ecotones and open habitats that are important for biodiversity. Markov chain-cellular automata models were used to project future changes, evaluating the effects on a habitat scale. Simulations show that some habitats defined as priority by the EU Habitat Directive will be compromised by the forest expansion by 2050 and suffer a consistent loss by 2100. This protocol, applied to other areas, can be used for designing long-term management measures with a focus on habitats where conservation status is at risk.

  4. Fine-Scale Ecological and Genetic Population Structure of Two Whitefish (Coregoninae) Species in the Vicinity of Industrial Thermal Emissions.

    PubMed

    Graham, Carly F; Eberts, Rebecca L; Morgan, Thomas D; Boreham, Douglas R; Lance, Stacey L; Manzon, Richard G; Martino, Jessica A; Rogers, Sean M; Wilson, Joanna Y; Somers, Christopher M

    2016-01-01

    Thermal pollution from industrial processes can have negative impacts on the spawning and development of cold-water fish. Point sources of thermal effluent may need to be managed to avoid affecting discrete populations. Correspondingly, we examined fine-scale ecological and genetic population structure of two whitefish species (Coregonus clupeaformis and Prosopium cylindraceum) on Lake Huron, Canada, in the immediate vicinity of thermal effluent from nuclear power generation. Niche metrics using δ13C and δ15N stable isotopes showed high levels of overlap (48.6 to 94.5%) in resource use by adult fish captured in areas affected by thermal effluent compared to nearby reference locations. Isotopic niche size, a metric of resource use diversity, was 1.3- to 2.8-fold higher than reference values in some thermally affected areas, indicative of fish mixing. Microsatellite analyses of genetic population structure (Fst, STRUCTURE and DAPC) indicated that fish captured at all locations in the vicinity of the power plant were part of a larger population extending beyond the study area. In concert, ecological and genetic markers do not support the presence of an evolutionarily significant unit in the vicinity of the power plant. Thus, future research should focus on the potential impacts of thermal emissions on development and recruitment.

  5. Impact of soil matric potential on the fine-scale spatial distribution and activity of specific microbial degrader communities.

    PubMed

    Monard, Cécile; Mchergui, Chokri; Nunan, Naoise; Martin-Laurent, Fabrice; Vieublé-Gonod, Laure

    2012-09-01

    The impact of the soil matric potential on the relationship between the relative abundance of degraders and their activity and on the spatial distribution of both at fine scales was determined to understand the role of environmental conditions in the degradation of organic substrates. The mineralization of (13) C-glucose and (13) C-2,4-dichlorophenoxyacetic acid (2,4-D) was measured at different matric potentials (-0.001, -0.01 and -0.316 MPa) in 6 × 6 × 6 mm(3) cubes excised from soil cores. At the end of the incubation, total bacterial and 2,4-D degrader abundances were determined by quantifying the 16S rRNA and the tfdA genes, respectively. The mineralization of 2,4-D was more sensitive to changes in matric potential than was that of glucose. The amount and spatial structure of 2,4-D mineralization decreased with matric potential, whilst the spatial variability increased. On the other hand, the spatial variation of glucose mineralization was less affected by changes in matric potential. The relationship between the relative abundance of 2,4-D degraders and 2,4-D mineralization was significantly affected by matric potential: the relative abundance of tfdA needed to be higher to reach a given level of 2,4-D mineralization in dryer than in moister conditions. The data show how microbial interactions with their microhabitat can have an impact on soil processes at larger scales.

  6. Kinship, inbreeding and fine-scale spatial structure influence gut microbiota in a hindgut-fermenting tortoise.

    PubMed

    Yuan, Michael L; Dean, Samantha H; Longo, Ana V; Rothermel, Betsie B; Tuberville, Tracey D; Zamudio, Kelly R

    2015-05-01

    Herbivorous vertebrates rely on complex communities of mutualistic gut bacteria to facilitate the digestion of celluloses and hemicelluloses. Gut microbes are often convergent based on diet and gut morphology across a phylogenetically diverse group of mammals. However, little is known about microbial communities of herbivorous hindgut-fermenting reptiles. Here, we investigate how factors at the individual level might constrain the composition of gut microbes in an obligate herbivorous reptile. Using multiplexed 16S rRNA gene sequencing, we characterized the faecal microbial community of a population of gopher tortoises (Gopherus polyphemus) and examined how age, genetic diversity, spatial structure and kinship influence differences among individuals. We recovered phylotypes associated with known cellulolytic function, including candidate phylum Termite Group 3, suggesting their importance for gopher tortoise digestion. Although host genetic structure did not explain variation in microbial composition and community structure, we found that fine-scale spatial structure, inbreeding, degree of relatedness and possibly ontogeny shaped patterns of diversity in faecal microbiomes of gopher tortoises. Our findings corroborate widespread convergence of faecal-associated microbes based on gut morphology and diet and demonstrate the role of spatial and demographic structure in driving differentiation of gut microbiota in natural populations.

  7. Fine scale variability of hyporheic hydrochemistry in salmon spawning gravels with contrasting groundwater-surface water interactions

    NASA Astrophysics Data System (ADS)

    Malcolm, I. A.; Soulsby, C.; Youngson, A. F.; Tetzlaff, D.

    2009-02-01

    There is increasing realisation of the importance of groundwater-surface water (GW-SW) interactions in understanding freshwater ecology. A study that assessed the influence of local GW-SW interactions on shallow (<250 mm) hyporheic water quality at two contrasting salmon spawning locations in Scotland, UK is reported. At a groundwater-dominated site, continuous logging sensors revealed that hyporheic dissolved oxygen (DO) concentrations changed rapidly in response to changing hydrological conditions. Low volume (25 ml) spot samples revealed fine-scale spatial variability (<0.05 m) consistent with a vertically shifting boundary layer between source waters. At a surface-water-dominated location, hyporheic water was typically characterised by high DO and electrical conductivity values, characteristic of surface water. Small reductions in DO at this site are hypothesised to be associated with short residence hyporheic discharge. A comparison between in-situ (logging DO sensor data) and ex-situ (small volume sampling) methods revealed good agreement, potentially allowing deployment of the two methods in stratified sampling programmes. This study demonstrates that hyporheic water quality varies over fine spatial and temporal scales and that future studies need to design sampling strategies that consider the scales appropriate to both the ecology and the hyporheic processes of interest.

  8. Local topography shapes fine-scale spatial genetic structure in the Arkansas Valley evening primrose, Oenothera harringtonii (Onagraceae).

    PubMed

    Rhodes, Matthew K; Fant, Jeremie B; Skogen, Krissa A

    2014-01-01

    Identifying factors that shape the spatial distribution of genetic variation is crucial to understanding many population- and landscape-level processes. In this study, we explore fine-scale spatial genetic structure in Oenothera harringtonii (Onagraceae), an insect-pollinated, gravity-dispersed herb endemic to the grasslands of south-central and southeastern Colorado, USA. We genotyped 315 individuals with 11 microsatellite markers and utilized a combination of spatial autocorrelation analyses and landscape genetic models to relate life history traits and landscape features to dispersal processes. Spatial genetic structure was consistent with theoretical expectations of isolation by distance, but this pattern was weak (Sp = 0.00374). Anisotropic analyses indicated that spatial genetic structure was markedly directional, in this case consistent with increased dispersal along prominent slopes. Landscape genetic models subsequently confirmed that spatial genetic variation was significantly influenced by local topographic heterogeneity, specifically that geographic distance, elevation and aspect were important predictors of spatial genetic structure. Among these variables, geographic distance was ~68% more important than elevation in describing spatial genetic variation, and elevation was ~42% more important than aspect after removing the effect of geographic distance. From these results, we infer a mechanism of hydrochorous seed dispersal along major drainages aided by seasonal monsoon rains. Our findings suggest that landscape features may shape microevolutionary processes at much finer spatial scales than typically considered, and stress the importance of considering how particular dispersal vectors are influenced by their environmental context.

  9. Fine-Scale Topographic Analysis of Rock Size Distributions Derived from High-Resolution Ground-Based LiDAR

    NASA Astrophysics Data System (ADS)

    Finnegan, D. C.; Arcone, S. A.; Bulmer, M. H.; Anderson, S. W.

    2007-05-01

    Quantitative factors such as RMS height, correlation lengths and surface slope derived from fine-scale topographic datasets hold the potential for characterizing surface morphology in relation to its underlying geologic processes. In an attempt to better understand the relationships between topographic roughness characteristics and geologic processes responsible for creating a distinct surface morphology, we utilize ground-based terrestrial LiDAR and coincidental orthorectified imagery to quantify the variability in RMS heights and correlation lengths. The purpose of this study is to understand directly how various topographic data collection techniques such as LiDAR and manual field-based measurements compare to one another and which techniques are most appropriate for characterizing topography at various scales. Topographic data from several platforms were acquired over desert surfaces in the Mojave Desert near Palm Springs, California and southwestern Arizona. The desert surfaces imaged in the Mojave contained average rock sizes ranging from decimeters to a maximum size near one meter and revealed wide variations in RMS heights and correlation lengths, in keeping with the highly variable surface. Alternately, the Arizona site exhibits less topographic variability and consistent statistics. The data are useful for characterizing the roughness of surfaces for a variety of disciplines, such as penetration of remote sensing signals, upwelling of radiation and characterizing the genetic origin of surfaces. Furthermore, these data become essential to airborne and ground-based imaging sensors and understanding how topographic irregularities affect data fidelity.

  10. Fine-Scale Distribution and Spatial Variability of Benthic Invertebrate Larvae in an Open Coastal Embayment in Nova Scotia, Canada

    PubMed Central

    Daigle, Rémi M.; Metaxas, Anna; deYoung, Brad

    2014-01-01

    This study quantified the fine- scale (0.5 km) of variability in the horizontal distributions of benthic invertebrate larvae and related this variability to that in physical and biological variables, such as density, temperature, salinity, fluorescence and current velocity. Larvae were sampled in contiguous 500-m transects along two perpendicular 10-km transects with a 200-µm plankton ring net (0.75-m diameter) in St. George’s Bay, Nova Scotia, Canada, in Aug 2009. Temperature, conductivity, pressure and fluorescence were measured with a CTD cast at each station, and currents were measured with an Acoustic Doppler Current Profiler moored at the intersection of the 2 transects. Gastropod, bivalve and, to a lesser extent, bryozoan larvae had very similar spatial distributions, but the distribution of decapod larvae had a different pattern. These findings suggest that taxonomic groups with functionally similar larvae have similar dispersive properties such as distribution and spatial variability, while the opposite is true for groups with functionally dissimilar larvae. The spatial variability in larval distributions was anisotropic and matched the temporal/spatial variability in the current velocity. We postulate that in a system with no strong oceanographic features, the scale of spatially coherent physical forcing (e.g. tidal periodicity) can regulate the formation or maintenance of larval patches; however, swimming ability may modulate it. PMID:25153075

  11. Extensive cryptic species diversity and fine-scale endemism in the marine red alga Portieria in the Philippines

    PubMed Central

    Payo, Dioli Ann; Leliaert, Frederik; Verbruggen, Heroen; D'hondt, Sofie; Calumpong, Hilconida P.; De Clerck, Olivier

    2013-01-01

    We investigated species diversity and distribution patterns of the marine red alga Portieria in the Philippine archipelago. Species boundaries were tested based on mitochondrial, plastid and nuclear encoded loci, using a general mixed Yule-coalescent (GMYC) model-based approach and a Bayesian multilocus species delimitation method. The outcome of the GMYC analysis of the mitochondrial encoded cox2-3 dataset was highly congruent with the multilocus analysis. In stark contrast with the current morphology-based assumption that the genus includes a single, widely distributed species in the Indo-West Pacific (Portieria hornemannii), DNA-based species delimitation resulted in the recognition of 21 species within the Philippines. Species distributions were found to be highly structured with most species restricted to island groups within the archipelago. These extremely narrow species ranges and high levels of intra-archipelagic endemism contrast with the wide-held belief that marine organisms generally have large geographical ranges and that endemism is at most restricted to the archipelagic level. Our results indicate that speciation in the marine environment may occur at spatial scales smaller than 100 km, comparable with some terrestrial systems. Our finding of fine-scale endemism has important consequences for marine conservation and management. PMID:23269854

  12. From fine-scale foraging to home ranges: a semivariance approach to identifying movement modes across spatiotemporal scales.

    PubMed

    Fleming, Chris H; Calabrese, Justin M; Mueller, Thomas; Olson, Kirk A; Leimgruber, Peter; Fagan, William F

    2014-05-01

    Understanding animal movement is a key challenge in ecology and conservation biology. Relocation data often represent a complex mixture of different movement behaviors, and reliably decomposing this mix into its component parts is an unresolved problem in movement ecology. Traditional approaches, such as composite random walk models, require that the timescales characterizing the movement are all similar to the usually arbitrary data-sampling rate. Movement behaviors such as long-distance searching and fine-scale foraging, however, are often intermixed but operate on vastly different spatial and temporal scales. An approach that integrates the full sweep of movement behaviors across scales is currently lacking. Here we show how the semivariance function (SVF) of a stochastic movement process can both identify multiple movement modes and solve the sampling rate problem. We express a broad range of continuous-space, continuous-time stochastic movement models in terms of their SVFs, connect them to relocation data via variogram regression, and compare them using standard model selection techniques. We illustrate our approach using Mongolian gazelle relocation data and show that gazelle movement is characterized by ballistic foraging movements on a 6-h timescale, fast diffusive searching with a 10-week timescale, and asymptotic diffusion over longer timescales.

  13. Fine-scale habitat use of reintroduced black-footed ferrets on prairie dog colonies in New Mexico

    USGS Publications Warehouse

    Chipault, Jennifer G.; Biggins, Dean E.; Detling, James K.; Long, Dustin H.; Reich, Robin M.

    2012-01-01

    Black-footed ferrets (Mustela nigripes) are among the most endangered animals in North America. Reintroductions of captive-born ferrets onto prairie dog (Cynomys spp.) colonies are crucial to the conservation of the species. In September 2007, captive-born ferrets were released on a black-tailed prairie dog (Cynomys ludovicianus) colony at the Vermejo Park Ranch, New Mexico. Ferret kits experimentally released in areas of comparatively low and high prairie dog burrow densities were located via spotlight surveys. Some maturing ferret kits were subsequently translocated to areas of low and high burrow densities on nearby prairie dog colonies. For 2 months, fine-scale habitat use was quantified by mapping all burrow openings within a 30-m radius of each ferret location. Spatial statistics accounted for autocorrelation in the burrow densities in areas used by ferrets. It was hypothesized that ferrets would select areas of high burrow densities within colonies; however, burrow densities in areas used by ferrets were generally similar to the available burrow densities. Because ferrets used areas with burrow densities similar to densities available at the colony level and because of the potential energetic benefits for ferrets using areas with high burrow densities, releasing ferrets on colonies with high burrow densities might increase reintroduction success.

  14. Resource selection models are useful in predicting fine-scale distributions of black-footed ferrets in prairie dog colonies

    USGS Publications Warehouse

    Eads, David A.; Jachowski, David S.; Biggins, Dean E.; Livieri, Travis M.; Matchett, Marc R.; Millspaugh, Joshua J.

    2012-01-01

    Wildlife-habitat relationships are often conceptualized as resource selection functions (RSFs)—models increasingly used to estimate species distributions and prioritize habitat conservation. We evaluated the predictive capabilities of 2 black-footed ferret (Mustela nigripes) RSFs developed on a 452-ha colony of black-tailed prairie dogs (Cynomys ludovicianus) in the Conata Basin, South Dakota. We used the RSFs to project the relative probability of occurrence of ferrets throughout an adjacent 227-ha colony. We evaluated performance of the RSFs using ferret space use data collected via postbreeding spotlight surveys June–October 2005–2006. In home ranges and core areas, ferrets selected the predicted "very high" and "high" occurrence categories of both RSFs. Count metrics also suggested selection of these categories; for each model in each year, approximately 81% of ferret locations occurred in areas of very high or high predicted occurrence. These results suggest usefulness of the RSFs in estimating the distribution of ferrets throughout a black-tailed prairie dog colony. The RSFs provide a fine-scale habitat assessment for ferrets that can be used to prioritize releases of ferrets and habitat restoration for prairie dogs and ferrets. A method to quickly inventory the distribution of prairie dog burrow openings would greatly facilitate application of the RSFs.

  15. Fine-scale spatial distribution of orchid mycorrhizal fungi in the soil of host-rich grasslands.

    PubMed

    Voyron, Samuele; Ercole, Enrico; Ghignone, Stefano; Perotto, Silvia; Girlanda, Mariangela

    2017-02-01

    Mycorrhizal fungi are essential for the survival of orchid seedlings under natural conditions. The distribution of these fungi in soil can constrain the establishment and resulting spatial arrangement of orchids at the local scale, but the actual extent of occurrence and spatial patterns of orchid mycorrhizal (OrM) fungi in soil remain largely unknown. We addressed the fine-scale spatial distribution of OrM fungi in two orchid-rich Mediterranean grasslands by means of high-throughput sequencing of fungal ITS2 amplicons, obtained from soil samples collected either directly beneath or at a distance from adult Anacamptis morio and Ophrys sphegodes plants. Like ectomycorrhizal and arbuscular mycobionts, OrM fungi (tulasnelloid, ceratobasidioid, sebacinoid and pezizoid fungi) exhibited significant horizontal spatial autocorrelation in soil. However, OrM fungal read numbers did not correlate with distance from adult orchid plants, and several of these fungi were extremely sporadic or undetected even in the soil samples containing the orchid roots. Orchid mycorrhizal 'rhizoctonias' are commonly regarded as unspecialized saprotrophs. The sporadic occurrence of mycobionts of grassland orchids in host-rich stands questions the view of these mycorrhizal fungi as capable of sustained growth in soil.

  16. Cultural transmission of tool use combined with habitat specializations leads to fine-scale genetic structure in bottlenose dolphins.

    PubMed

    Kopps, Anna M; Ackermann, Corinne Y; Sherwin, William B; Allen, Simon J; Bejder, Lars; Krützen, Michael

    2014-05-07

    Socially learned behaviours leading to genetic population structure have rarely been described outside humans. Here, we provide evidence of fine-scale genetic structure that has probably arisen based on socially transmitted behaviours in bottlenose dolphins (Tursiops sp.) in western Shark Bay, Western Australia. We argue that vertical social transmission in different habitats has led to significant geographical genetic structure of mitochondrial DNA (mtDNA) haplotypes. Dolphins with mtDNA haplotypes E or F are found predominantly in deep (more than 10 m) channel habitat, while dolphins with a third haplotype (H) are found predominantly in shallow habitat (less than 10 m), indicating a strong haplotype-habitat correlation. Some dolphins in the deep habitat engage in a foraging strategy using tools. These 'sponging' dolphins are members of one matriline, carrying haplotype E. This pattern is consistent with what had been demonstrated previously at another research site in Shark Bay, where vertical social transmission of sponging had been shown using multiple lines of evidence. Using an individual-based model, we found support that in western Shark Bay, socially transmitted specializations may have led to the observed genetic structure. The reported genetic structure appears to present an example of cultural hitchhiking of mtDNA haplotypes on socially transmitted foraging strategies, suggesting that, as in humans, genetic structure can be shaped through cultural transmission.

  17. Fine-scale planktonic habitat partitioning at a shelf-slope front revealed by a high-resolution imaging system

    NASA Astrophysics Data System (ADS)

    Greer, Adam T.; Cowen, Robert K.; Guigand, Cedric M.; Hare, Jonathan A.

    2015-02-01

    Ocean fronts represent productive regions of the ocean, but predator-prey interactions within these features are poorly understood partially due to the coarse-scale and biases of net-based sampling methods. We used the In Situ Ichthyoplankton Imaging System (ISIIS) to sample across a front near the Georges Bank shelf edge on two separate sampling days in August 2010. Salinity characterized the transition from shelf to slope water, with isopycnals sloping vertically, seaward, and shoaling at the thermocline. A frontal feature defined by the convergence of isopycnals and a surface temperature gradient was sampled inshore of the shallowest zone of the shelf-slope front. Zooplankton and larval fishes were abundant on the shelf side of the front and displayed taxon-dependent depth distributions but were rare in the slope waters. Supervised automated particle counting showed small particles with high solidity, verified to be zooplankton (copepods and appendicularians), aggregating near surface above the front. Salps were most abundant in zones of intermediate chlorophyll-a fluorescence, distinctly separate from high abundances of other grazers and found almost exclusively in colonial form (97.5%). Distributions of gelatinous zooplankton differed among taxa but tended to follow isopycnals. Fine-scale sampling revealed distinct habitat partitioning of various planktonic taxa, resulting from a balance of physical and biological drivers in relation to the front.

  18. Activity patterns and fine-scale resource partitioning in the gregarious Kihansi spray toad Nectophrynoides asperginis in captivity.

    PubMed

    Rija, Alfan A; Goboro, Ezekiel M; Mwamende, Kuruthumu A; Said, Abubakari; Kohi, Edward M; Hassan, Shombe N

    2014-01-01

    Understanding the behavior of species threatened with extinction is important for conservation planning and for solving problems facing species in captivity and the wild. We examined diurnal activity budgets and habitat use of the extinct in the wild Kihansi spray toad to provide insights into ongoing conservation initiatives for this species. Observations on eight target behaviors were made each morning and evening for 14 days, in two subpopulations at Kihansi and University of Dar es Salaam captive breeding centers. There were significantly more bouts of resting than calling, amplexing, hunting, walking, climbing, or feeding. There was no difference in mean time spent in each activity between the two subpopulations. The use of habitat was variable between age classes, subpopulations and sampling time. Young toads spent significantly more time resting at the top of vegetation and on walls while adults rested more on logs. Further, adults foraged more on the walls and vegetation in the morning and on the ground in the evening. Contrastingly, young toads foraged more on the ground in the morning and switched to elevated patches during evening. The similarity of the toads' behavior suggests that important biological traits are still maintained in captivity and retained across toad generations. Furthermore, temporal and spatial variations in the use of habitat structures between age groups suggest fine-scale resource partitioning to reduce competition in this gregarious species. These results highlight the importance of maintaining diverse habitat structures in captivity and are useful for planning species reintroduction and future restocking programs.

  19. Fine-scale ecological and genetic population structure of two whitefish (Coregoninae) species in the vicinity of industrial thermal emissions

    SciTech Connect

    Graham, Carly F.; Eberts, Rebecca L.; Morgan, Thomas D.; Boreham, Douglas R.; Lance, Stacey L.; Manzon, Richard G.; Martino, Jessica A.; Rogers, Sean M.; Wilson, Joanna Y.; Somers, Christopher M.; Britton, Robert

    2016-01-25

    Thermal pollution from industrial processes can have negative impacts on the spawning and development of cold-water fish. Point sources of thermal effluent may need to be managed to avoid affecting discrete populations. Correspondingly, we examined fine-scale ecological and genetic population structure of two whitefish species (Coregonus clupeaformis and Prosopium cylindraceum) on Lake Huron, Canada, in the immediate vicinity of thermal effluent from nuclear power generation. Niche metrics using δ13C and δ15N stable isotopes showed high levels of overlap (48.6 to 94.5%) in resource use by adult fish captured in areas affected by thermal effluent compared to nearby reference locations. Isotopic niche size, a metric of resource use diversity, was 1.3- to 2.8-fold higher than reference values in some thermally affected areas, indicative of fish mixing. Microsatellite analyses of genetic population structure (Fst, STRUCTURE and DAPC) indicated that fish captured at all locations in the vicinity of the power plant were part of a larger population extending beyond the study area. In concert, ecological and genetic markers do not support the presence of an evolutionarily significant unit in the vicinity of the power plant. Furthermore, future research should focus on the potential impacts of thermal emissions on development and recruitment.

  20. Fine-scale ecological and genetic population structure of two whitefish (Coregoninae) species in the vicinity of industrial thermal emissions

    DOE PAGES

    Graham, Carly F.; Eberts, Rebecca L.; Morgan, Thomas D.; ...

    2016-01-25

    Thermal pollution from industrial processes can have negative impacts on the spawning and development of cold-water fish. Point sources of thermal effluent may need to be managed to avoid affecting discrete populations. Correspondingly, we examined fine-scale ecological and genetic population structure of two whitefish species (Coregonus clupeaformis and Prosopium cylindraceum) on Lake Huron, Canada, in the immediate vicinity of thermal effluent from nuclear power generation. Niche metrics using δ13C and δ15N stable isotopes showed high levels of overlap (48.6 to 94.5%) in resource use by adult fish captured in areas affected by thermal effluent compared to nearby reference locations. Isotopicmore » niche size, a metric of resource use diversity, was 1.3- to 2.8-fold higher than reference values in some thermally affected areas, indicative of fish mixing. Microsatellite analyses of genetic population structure (Fst, STRUCTURE and DAPC) indicated that fish captured at all locations in the vicinity of the power plant were part of a larger population extending beyond the study area. In concert, ecological and genetic markers do not support the presence of an evolutionarily significant unit in the vicinity of the power plant. Furthermore, future research should focus on the potential impacts of thermal emissions on development and recruitment.« less

  1. Fine scale patterns of genetic partitioning in the rediscovered African crocodile, Crocodylus suchus (Saint-Hilaire 1807)

    PubMed Central

    Shirley, Matthew H.; Hekkala, Evon R.

    2016-01-01

    Landscape heterogeneity, phylogenetic history, and stochasticity all influence patterns of geneflow and connectivity in wild vertebrates. Fine-scale patterns of genetic partitioning may be particularly important for the sustainable management of widespread species in trade, such as crocodiles. We examined genetic variation within the rediscovered African crocodile, Crocodylus suchus, across its distribution in West and Central Africa. We genotyped 109 individuals at nine microsatellite loci from 16 sampling localities and used three Bayesian clustering techniques and an analysis of contemporary gene flow to identify population structure across the landscape. We identified up to eight genetic clusters that largely correspond to populations isolated in coastal wetland systems and across large distances. Crocodile population clusters from the interior were readily distinguished from coastal areas, which were further subdivided by distance and drainage basin. Migration analyses indicated contemporary migration only between closely positioned coastal populations. These findings indicate high levels of population structure throughout the range of C. suchus and we use our results to suggest a role for molecular tools in identifying crocodile conservation units for this species. Further research, including additional sampling throughout the Congo and Niger drainages, would clarify both the landscape connectivity and management of this species. PMID:27114867

  2. Fine-scale heterogeneity in crossover rate in the garnet-scalloped region of the Drosophila melanogaster X chromosome.

    PubMed

    Singh, Nadia D; Stone, Eric A; Aquadro, Charles F; Clark, Andrew G

    2013-06-01

    Homologous recombination affects myriad aspects of genome evolution, from standing levels of nucleotide diversity to the efficacy of natural selection. Rates of crossing over show marked variability at all scales surveyed, including species-, population-, and individual-level differences. Even within genomes, crossovers are nonrandomly distributed in a wide diversity of taxa. Although intra- and intergenomic heterogeneities in crossover distribution have been documented in Drosophila, the scale and degree of crossover rate heterogeneity remain unclear. In addition, the genetic features mediating this heterogeneity are unknown. Here we quantify fine-scale heterogeneity in crossover distribution in a 2.1-Mb region of the Drosophila melanogaster X chromosome by localizing crossover breakpoints in 2500 individuals, each containing a single crossover in this specific X chromosome region. We show 90-fold variation in rates of crossing over at a 5-kb scale, place this variation in the context of several aspects of genome evolution, and identify several genetic features associated with crossover rates. Our results shed new light on the scale and magnitude of crossover rate heterogeneity in D. melanogaster and highlight potential features mediating this heterogeneity.

  3. Oscillatory flow braking: inner magnetosphere observations

    NASA Astrophysics Data System (ADS)

    Panov, E. V.; Nakamura, R.; Baumjohann, W.; Angelopoulos, V.

    2013-12-01

    We search for damped oscillatory flow braking events observed by THEMIS/ARTEMIS in the near-Earth plasma sheet when their counterpart in the inner magnetosphere was observed. By comparing the particle and magnetic field data in the two locations we analyze the feedback of the inner magnetosphere to plasma sheet oscillatory flow braking. We discuss the possible role of the oscillatory flow events for plasma injection into the inner magnetosphere.

  4. Heteroclinic contours in oscillatory ensembles.

    PubMed

    Komarov, M A; Osipov, G V; Zhou, C S

    2013-02-01

    In this work, we study the onset of sequential activity in ensembles of neuronlike oscillators with inhibitorylike coupling between them. The winnerless competition (WLC) principle is a dynamical concept underlying sequential activity generation. According to the WLC principle, stable heteroclinic sequences in the phase space of a network model represent sequential metastable dynamics. We show that stable heteroclinic sequences and stable heteroclinic channels, connecting saddle limit cycles, can appear in oscillatory models of neural activity. We find the key bifurcations which lead to the occurrence of sequential activity as well as heteroclinic sequences and channels.

  5. Fluctuations of Prestimulus Oscillatory Power Predict Subjective Perception of Tactile Simultaneity

    PubMed Central

    Halacz, Johanna; van Dijk, Hanneke; Kahlbrock, Nina; Schnitzler, Alfons

    2012-01-01

    Oscillatory activity is modulated by sensory stimulation but can also fluctuate in the absence of sensory input. Recent studies have demonstrated that such fluctuations of oscillatory activity can have substantial influence on the perception of subsequent stimuli. In the present study, we employed a simultaneity task in the somatosensory domain to study the role of prestimulus oscillatory activity on the temporal perception of 2 events. Subjects received electrical stimulations of the left and right index finger with varying stimulus onset asynchronies (SOAs) and reported their subjective perception of simultaneity, while brain activity was recorded with magnetoencephalography. With intermediate SOAs (30 and 45 ms), subjects frequently misperceived the stimulation as simultaneously. We compared neuronal oscillatory power in these conditions and found that power in the high beta band (∼20 to 40 Hz) in primary and secondary somatosensory cortex prior to the electrical stimulation predicted subjects' reports of simultaneity. Additionally, prestimulus alpha-band power influenced perception in the condition SOA 45 ms. Our results indicate that fluctuations of ongoing oscillatory activity in the beta and alpha bands shape subjective perception of physically identical stimulation. PMID:22114082

  6. Fluctuations of prestimulus oscillatory power predict subjective perception of tactile simultaneity.

    PubMed

    Lange, Joachim; Halacz, Johanna; van Dijk, Hanneke; Kahlbrock, Nina; Schnitzler, Alfons

    2012-11-01

    Oscillatory activity is modulated by sensory stimulation but can also fluctuate in the absence of sensory input. Recent studies have demonstrated that such fluctuations of oscillatory activity can have substantial influence on the perception of subsequent stimuli. In the present study, we employed a simultaneity task in the somatosensory domain to study the role of prestimulus oscillatory activity on the temporal perception of 2 events. Subjects received electrical stimulations of the left and right index finger with varying stimulus onset asynchronies (SOAs) and reported their subjective perception of simultaneity, while brain activity was recorded with magnetoencephalography. With intermediate SOAs (30 and 45 ms), subjects frequently misperceived the stimulation as simultaneously. We compared neuronal oscillatory power in these conditions and found that power in the high beta band (∼20 to 40 Hz) in primary and secondary somatosensory cortex prior to the electrical stimulation predicted subjects' reports of simultaneity. Additionally, prestimulus alpha-band power influenced perception in the condition SOA 45 ms. Our results indicate that fluctuations of ongoing oscillatory activity in the beta and alpha bands shape subjective perception of physically identical stimulation.

  7. Oscillatory Flow Testing in a Sandbox - Towards Oscillatory Hydraulic Tomography

    NASA Astrophysics Data System (ADS)

    Zhou, Y.; Lim, D.; Cupola, F.; Cardiff, M. A.

    2014-12-01

    Detailed knowledge of subsurface hydraulic properties is important for predicting groundwater flow and contaminant transport. The spatial variation of hydraulic properties in the shallow subsurface has been extensively studied in the past two decades. A recent approach to characterize subsurface properties is hydraulic tomography, in which pressure data from multiple constant-rate pumping tests is inverted using a numerical model. Many laboratory sandbox studies have explored the performance of hydraulic tomography under different controlled conditions and shown that detailed heterogeneity information can be extracted (Liu et al., 2002, Illman et al., 2007, 2008, 2010a, 2010b, Liu et al., 2007, 2008, Xiang et al., 2009, Yin and Illman, 2009, Liu and Kitanidis, 2011, Berg and Illman, 2011a). Recently, Cardiff et al. (2013) proposed a modified approach of Oscillatory Hydraulic Tomography (OHT) - in which periodic pumping signals of different frequencies are used for aquifer stimulation - to characterize aquifer properties. The potential advantages of OHT over traditional hydraulic tomography include: 1) no net injection or extraction of water; 2) little movement of existing contamination; 3) minimal impact of model boundary conditions; and 4) robust extraction of oscillatory signals from noisy data. To evaluate the premise of OHT, we built a highly-instrumented 2-D laboratory sandbox and record pressure responses to periodic pumping tests. In our setup, the laboratory sandbox is filled with sand of known hydraulic properties, and we measure aquifer responses at a variety of testing frequencies. The signals recorded are processed using Fourier-domain analysis, and compared against expected results under linear (Darcian) theory. The responses are analyzed using analytical and numerical models, which provide key insights as to: 1) how "effective" hydraulic properties estimated using homogeneous models are associated with aquifer heterogeneity; and 2) how OHT is able to

  8. DISTINCTIVE FINE-SCALE MORPHOLOGY OF GAS-RICH SITES ON THE CASCADIA MARGIN NEAR BULLSEYE VENT

    NASA Astrophysics Data System (ADS)

    Thomas, H.; Paull, C. K.; Caress, D. W.; Ussler, W.; Lundsten, E.; Riedel, M.

    2009-12-01

    High-resolution multibeam bathymetry (vertical precision of 0.15 m and horizontal resolution of 1.0 m) and 2-10 kHz chirp seismic reflection profiles were recently collected over a small section of the Cascadia continental margin off British Columbia. The surveys were conducted using an autonomous underwater vehicle (AUV) and reveal in unprecedented detail fine-scale morphology and shallow seafloor structure. An inertial navigation system aided by a Doppler velocity log allows the AUV to fly pre-programmed grids with 150 m line spacing at 3 knots while maintaining an altitude of 50 m above the seafloor. The data were collected on three 17-hour-long dives in 1170 to 1410 m water depths focused on a 9.5 km long and ~3 km wide area on both sides of a node on the scientific research cable deployed by the Canadian Neptune Project. These surveys also cover the near seafloor associated with gas hydrate research boreholes at ODP Site 889/890, and IODP Site 1328 (Bullseye Vent). While the fine-scale texture of the seafloor is generally smooth throughout the surveyed area, there are notable exceptions. The crests of the tectonic ridges show a very distinctive hummocky topography. This topography is characterized by a highly irregular surface formed by small sometimes circular ~0.5 m deep pits, local highs and lows separated by ~0.5 m high ledges that could be formed by irregularly eroded bedding surfaces. Similar shapes also occur at larger scales including crater-like features that are up to 80 m across, raised rims, and more than 5 m deep central ‘crater’. A similar texture has been observed in other AUV surveys associated with methane-derived carbonate bearing sites known to overlie near seafloor gas hydrate deposits on Hydrate Ridge. Prior to this survey Bullseye Vent was believed to be associated with a roughly circular subtle topographic high (~2 m high) with a ~350 m diameter. The AUV data reveal Bullseye Vent to be a depression (~300 m long, ~70 m wide, up to 7 m

  9. Fine-Scale Community Structure Analysis of ANME in Nyegga Sediments with High and Low Methane Flux

    PubMed Central

    Roalkvam, Irene; Dahle, Håkon; Chen, Yifeng; Jørgensen, Steffen Leth; Haflidason, Haflidi; Steen, Ida Helene

    2012-01-01

    To obtain knowledge on how regional variations in methane seepage rates influence the stratification, abundance, and diversity of anaerobic methanotrophs (ANME), we analyzed the vertical microbial stratification in a gravity core from a methane micro-seeping area at Nyegga by using 454-pyrosequencing of 16S rRNA gene tagged amplicons and quantitative PCR. These data were compared with previously obtained data from the more active G11 pockmark, characterized by higher methane flux. A down core stratification and high relative abundance of ANME were observed in both cores, with transition from an ANME-2a/b dominated community in low-sulfide and low methane horizons to ANME-1 dominance in horizons near the sulfate-methane transition zone. The stratification was over a wider spatial region and at greater depth in the core with lower methane flux, and the total 16S rRNA copy numbers were two orders of magnitude lower than in the sediments at G11 pockmark. A fine-scale view into the ANME communities at each location was achieved through operational taxonomical units (OTU) clustering of ANME-affiliated sequences. The majority of ANME-1 sequences from both sampling sites clustered within one OTU, while ANME-2a/b sequences were represented in unique OTUs. We suggest that free-living ANME-1 is the most abundant taxon in Nyegga cold seeps, and also the main consumer of methane. The observation of specific ANME-2a/b OTUs at each location could reflect that organisms within this clade are adapted to different geochemical settings, perhaps due to differences in methane affinity. Given that the ANME-2a/b population could be sustained in less active seepage areas, this subgroup could be potential seed populations in newly developed methane-enriched environments. PMID:22715336

  10. Fine-scale Clonal Structure and Diversity within Patches of a Clone-forming Dioecious Shrub, Ilex leucoclada (Aquifoliaceae)

    PubMed Central

    TORIMARU, TAKESHI; TOMARU, NOBUHIRO

    2004-01-01

    • Background and Aims The mode of reproduction (sexual vs. asexual) is likely to have important effects on genetic variation and its spatial distribution within plant populations. An investigation was undertaken of fine-scale clonal structure and diversity within patches of Ilex leucoclada (a clone-forming dioecious shrub). • Methods Six patches were selected in a 1-ha plot previously established in an old-growth beech forest. Two of the selected patches were composed predominantly of stems with male flowers (male patch), and two contained stems with predominantly female flowers (female patch). The remaining two patches contained stems with male flowers and stems with female flowers in more or less equal proportions (mixed patch). Different genets were distinguished using random amplified polymorphic DNA (RAPD) markers. • Key Results One hundred and fifty-six genets with different RAPD phenotypes were identified among 1928 stems from the six patches. Among the six patches, the male patches had the lowest clonal diversity, and the mixed patches had the highest. Distribution maps of the genets showed that they extended downhill, reflecting natural layering that occurred when stems were pressed to the ground by heavy snow. In every patch, there were a few large genets with many stems and many small genets with a few stems. • Conclusion The differences in clonal diversity among patches may be due to differences in seedling recruitment frequencies. The skewed distribution of genet size (defined as the number of stems per genet) within patches may be due to differences in the timing of germination, or age (with early-establishing genets having clear advantages for acquiring resources) and/or intraspecific competition. PMID:15546930

  11. Fine-scale alongshore variability over the inner continental shelf revealed by fiber-optic distributed temperature sensing

    NASA Astrophysics Data System (ADS)

    Connolly, T.; Kirincich, A.

    2015-12-01

    The physical dynamics of the inner continental shelf determine the exchange of heat, nutrients, and other tracers between the nearshore environment and deeper ocean. At locations where the coastline and bathymetry are not uniform, there is likely to be significant exchange associated with with complex three-dimensional flow structures. Resolving such features in observations remains a challenge, particularly below the surface where satellites and high-frequency radar do not measure. To obtain high-resolution measurements of subsurface alongshore temperature variability during a field study on inner-shelf exchange, a fiber-optic distributed temperature sensing (DTS) system was deployed at the Martha's Vineyard Coastal Observatory off the southern coast of New England. The DTS system emits a laser down a fiber-optic cable and measures the intensity of Raman backscatter at different frequencies, which provides an estimate of the surrounding ocean temperature at 1-m intervals along the cable. In this study, a 5-km fiber-optic cable was deployed along the seafloor at the 17-m isobath for a duration of over three months. The fine-scale measurements of temperature along the cable reveal sharp fronts that propagate along the bottom and are associated with rapid near-bottom cooling. When these features are present, which is only when the water column is stratified, their appearance is linked with the tidal cycle. The direction of propagation, calculated at a location where the cable turns inshore, has a significant alongshore component and suggests that the propagating fronts originate at a tidal mixing front where strong tidal currents flow over a shallow shoal. The fronts decay as they travel, indicating that they influence the alongshore thermal structure of the water column. These DTS observations provide a new perspective on the complex three-dimensional circulation associated with the combination of strong tides, stratification and shallow bathymetry.

  12. Characterization of turbulence from a fine-scale parameterization and microstructure measurements in the Mediterranean Sea during the BOUM experiment

    NASA Astrophysics Data System (ADS)

    Cuypers, Y.; Bouruet-Aubertot, P.; Marec, C.; Fuda, J.-L.

    2012-08-01

    One of the main purposes of the BOUM experiment was to find evidence of the possible impact of submesoscale dynamics on biogeochemical cycles. To this aim physical as well as biogeochemical data were collected along a zonal transect through the western and eastern basins of the Mediterranean Sea. Along this transect 3-day fixed point stations were performed within anticyclonic eddies during which microstructure measurements of the temperature gradient were collected over the top 100 m of the water column. We focus here on the characterization of turbulent mixing. The analysis of microstructure measurements revealed a high level of turbulent kinetic energy (TKE) dissipation rate in the seasonal pycnocline and a moderate level below with mean values of the order of 10-6 W kg-1 and 10-8 W kg-1, respectively. The Gregg Henyey (Gregg, 1989) fine-scale parameterization of TKE dissipation rate produced by internal wave breaking, and adapted here following Polzin et al. (1995) to take into account the strain to shear ratio, was first compared to these direct measurements with favorable results. The parameterization was then applied to the whole data set. Within the eddies, a significant increase of dissipation at the top and base of eddies associated with strong near-inertial waves is observed. Vertical turbulent diffusivity is increased both in these regions and in the weakly stratified eddy core. The stations collected along the East-West transect provide an overview of parameterized TKE dissipation rates and vertical turbulent diffusivity over a latitudinal section of the Mediterranean Sea. Strong TKE dissipation rates are found within the first 500 m and up to 1500 m above the bottom. Close to the bottom where the stratification is weak, the inferred vertical turbulent diffusivity can reach Kz≃10-3 m2 s-1 and may therefore have a strong impact on the upward diffusive transport of deep waters masses.

  13. Fine-Scale Cartography of Human Impacts along French Mediterranean Coasts: A Relevant Map for the Management of Marine Ecosystems.

    PubMed

    Holon, Florian; Mouquet, Nicolas; Boissery, Pierre; Bouchoucha, Marc; Delaruelle, Gwenaelle; Tribot, Anne-Sophie; Deter, Julie

    2015-01-01

    Ecosystem services provided by oceans and seas support most human needs but are threatened by human activities. Despite existing maps illustrating human impacts on marine ecosystems, information remains either large-scale but rough and insufficient for stakeholders (1 km² grid, lack of data along the coast) or fine-scale but fragmentary and heterogeneous in methodology. The objectives of this study are to map and quantify the main pressures exerted on near-coast marine ecosystems, at a large spatial scale though in fine and relevant resolution for managers (one pixel = 20 x 20 m). It focuses on the French Mediterranean coast (1,700 km of coastline including Corsica) at a depth of 0 to 80 m. After completing and homogenizing data presently available under GIS on the bathymetry and anthropogenic pressures but also on the seabed nature and ecosystem vulnerability, we provide a fine modeling of the extent and impacts of 10 anthropogenic pressures on marine habitats. The considered pressures are man-made coastline, boat anchoring, aquaculture, urban effluents, industrial effluents, urbanization, agriculture, coastline erosion, coastal population and fishing. A 1:10 000 continuous habitat map is provided considering 11 habitat classes. The marine bottom is mostly covered by three habitats: infralittoral soft bottom, Posidonia oceanica meadows and circalittoral soft bottom. Around two thirds of the bottoms are found within medium and medium high cumulative impact categories. Seagrass meadows are the most impacted habitats. The most important pressures (in area and intensity) are urbanization, coastal population, coastal erosion and man-made coastline. We also identified areas in need of a special management interest. This work should contribute to prioritize environmental needs, as well as enhance the development of indicators for the assessment of the ecological status of coastal systems. It could also help better apply and coordinate management measures at a relevant

  14. Fine-Scale Cartography of Human Impacts along French Mediterranean Coasts: A Relevant Map for the Management of Marine Ecosystems

    PubMed Central

    Holon, Florian; Mouquet, Nicolas; Boissery, Pierre; Bouchoucha, Marc; Delaruelle, Gwenaelle; Tribot, Anne-Sophie; Deter, Julie

    2015-01-01

    Ecosystem services provided by oceans and seas support most human needs but are threatened by human activities. Despite existing maps illustrating human impacts on marine ecosystems, information remains either large-scale but rough and insufficient for stakeholders (1 km² grid, lack of data along the coast) or fine-scale but fragmentary and heterogeneous in methodology. The objectives of this study are to map and quantify the main pressures exerted on near-coast marine ecosystems, at a large spatial scale though in fine and relevant resolution for managers (one pixel = 20 x 20 m). It focuses on the French Mediterranean coast (1,700 km of coastline including Corsica) at a depth of 0 to 80 m. After completing and homogenizing data presently available under GIS on the bathymetry and anthropogenic pressures but also on the seabed nature and ecosystem vulnerability, we provide a fine modeling of the extent and impacts of 10 anthropogenic pressures on marine habitats. The considered pressures are man-made coastline, boat anchoring, aquaculture, urban effluents, industrial effluents, urbanization, agriculture, coastline erosion, coastal population and fishing. A 1:10 000 continuous habitat map is provided considering 11 habitat classes. The marine bottom is mostly covered by three habitats: infralittoral soft bottom, Posidonia oceanica meadows and circalittoral soft bottom. Around two thirds of the bottoms are found within medium and medium high cumulative impact categories. Seagrass meadows are the most impacted habitats. The most important pressures (in area and intensity) are urbanization, coastal population, coastal erosion and man-made coastline. We also identified areas in need of a special management interest. This work should contribute to prioritize environmental needs, as well as enhance the development of indicators for the assessment of the ecological status of coastal systems. It could also help better apply and coordinate management measures at a relevant

  15. High Genetic Diversity and Fine-Scale Spatial Structure in the Marine Flagellate Oxyrrhis marina (Dinophyceae) Uncovered by Microsatellite Loci

    PubMed Central

    Lowe, Chris D.; Montagnes, David J. S.; Martin, Laura E.; Watts, Phillip C.

    2010-01-01

    Free-living marine protists are often assumed to be broadly distributed and genetically homogeneous on large spatial scales. However, an increasing application of highly polymorphic genetic markers (e.g., microsatellites) has provided evidence for high genetic diversity and population structuring on small spatial scales in many free-living protists. Here we characterise a panel of new microsatellite markers for the common marine flagellate Oxyrrhis marina. Nine microsatellite loci were used to assess genotypic diversity at two spatial scales by genotyping 200 isolates of O. marina from 6 broad geographic regions around Great Britain and Ireland; in one region, a single 2 km shore line was sampled intensively to assess fine-scale genetic diversity. Microsatellite loci resolved between 1–6 and 7–23 distinct alleles per region in the least and most variable loci respectively, with corresponding variation in expected heterozygosities (He) of 0.00–0.30 and 0.81–0.93. Across the dataset, genotypic diversity was high with 183 genotypes detected from 200 isolates. Bayesian analysis of population structure supported two model populations. One population was distributed across all sampled regions; the other was confined to the intensively sampled shore, and thus two distinct populations co-occurred at this site. Whilst model-based analysis inferred a single UK-wide population, pairwise regional FST values indicated weak to moderate population sub-division (0.01–0.12), but no clear correlation between spatial and genetic distance was evident. Data presented in this study highlight extensive genetic diversity for O. marina; however, it remains a substantial challenge to uncover the mechanisms that drive genetic diversity in free-living microorganisms. PMID:21203414

  16. Contrasting patterns of clonality and fine-scale genetic structure in two rare sedges with differing geographic distributions

    PubMed Central

    Binks, R M; Millar, M A; Byrne, M

    2015-01-01

    For plants with mixed reproductive capabilities, asexual reproduction is more frequent in rare species and is considered a strategy for persistence when sexual recruitment is limited. We investigate whether asexual reproduction contributes to the persistence of two co-occurring, rare sedges that both experience irregular seed set and if their differing geographic distributions have a role in the relative contribution of clonality. Genotypic richness was high (R=0.889±0.02) across the clustered populations of Lepidosperma sp. Mt Caudan and, where detected, clonal patches were small, both in ramet numbers (⩽3 ramets/genet) and physical size (1.3±0.1 m). In contrast, genotypic richness was lower in the isolated L. sp. Parker Range populations, albeit more variable (R=0.437±0.13), with genets as large as 17 ramets and up to 5.8 m in size. Aggregated clonal growth generated significant fine-scale genetic structure in both species but to a greater spatial extent and with additional genet-level structure in L. sp. Parker Range that is likely due to restricted seed dispersal. Despite both species being rare, asexual reproduction clearly has a more important role in the persistence of L. sp. Parker Range than L. sp. Mt Caudan. This is consistent with our prediction that limitations to sexual reproduction, via geographic isolation to effective gene exchange, can lead to greater contributions of asexual reproduction. These results demonstrate the role of population isolation in affecting the balance of alternate reproductive modes and the contextual nature of asexual reproduction in rare species. PMID:25873148

  17. Human Social Behavior and Demography Drive Patterns of Fine-Scale Dengue Transmission in Endemic Areas of Colombia.

    PubMed

    Padmanabha, Harish; Correa, Fabio; Rubio, Camilo; Baeza, Andres; Osorio, Salua; Mendez, Jairo; Jones, James Holland; Diuk-Wasser, Maria A

    2015-01-01

    Dengue is known to transmit between humans and A. aegypti mosquitoes living in neighboring houses. Although transmission is thought to be highly heterogeneous in both space and time, little is known about the patterns and drivers of transmission in groups of houses in endemic settings. We carried out surveys of PCR positivity in children residing in 2-block patches of highly endemic cities of Colombia. We found high levels of heterogeneity in PCR positivity, varying from less than 30% in 8 of the 10 patches to 56 and 96%, with the latter patch containing 22 children simultaneously PCR positive (PCR22) for DEN2. We then used an agent-based model to assess the likely eco-epidemiological context of this observation. Our model, simulating daily dengue dynamics over a 20 year period in a single two block patch, suggests that the observed heterogeneity most likely derived from variation in the density of susceptible people. Two aspects of human adaptive behavior were critical to determining this density: external social relationships favoring viral introduction (by susceptible residents or infectious visitors) and immigration of households from non-endemic areas. External social relationships generating frequent viral introduction constituted a particularly strong constraint on susceptible densities, thereby limiting the potential for explosive outbreaks and dampening the impact of heightened vectorial capacity. Dengue transmission can be highly explosive locally, even in neighborhoods with significant immunity in the human population. Variation among neighborhoods in the density of local social networks and rural-to-urban migration is likely to produce significant fine-scale heterogeneity in dengue dynamics, constraining or amplifying the impacts of changes in mosquito populations and cross immunity between serotypes.

  18. Human Social Behavior and Demography Drive Patterns of Fine-Scale Dengue Transmission in Endemic Areas of Colombia

    PubMed Central

    Padmanabha, Harish; Correa, Fabio; Rubio, Camilo; Baeza, Andres; Osorio, Salua; Mendez, Jairo; Jones, James Holland; Diuk-Wasser, Maria A

    2015-01-01

    Dengue is known to transmit between humans and A. aegypti mosquitoes living in neighboring houses. Although transmission is thought to be highly heterogeneous in both space and time, little is known about the patterns and drivers of transmission in groups of houses in endemic settings. We carried out surveys of PCR positivity in children residing in 2-block patches of highly endemic cities of Colombia. We found high levels of heterogeneity in PCR positivity, varying from less than 30% in 8 of the 10 patches to 56 and 96%, with the latter patch containing 22 children simultaneously PCR positive (PCR22) for DEN2. We then used an agent-based model to assess the likely eco-epidemiological context of this observation. Our model, simulating daily dengue dynamics over a 20 year period in a single two block patch, suggests that the observed heterogeneity most likely derived from variation in the density of susceptible people. Two aspects of human adaptive behavior were critical to determining this density: external social relationships favoring viral introduction (by susceptible residents or infectious visitors) and immigration of households from non-endemic areas. External social relationships generating frequent viral introduction constituted a particularly strong constraint on susceptible densities, thereby limiting the potential for explosive outbreaks and dampening the impact of heightened vectorial capacity. Dengue transmission can be highly explosive locally, even in neighborhoods with significant immunity in the human population. Variation among neighborhoods in the density of local social networks and rural-to-urban migration is likely to produce significant fine-scale heterogeneity in dengue dynamics, constraining or amplifying the impacts of changes in mosquito populations and cross immunity between serotypes. PMID:26656072

  19. Fine-Scale Genetic Structure of Monilinia fructicola During Brown Rot Epidemics Within Individual Peach Tree Canopies.

    PubMed

    Everhart, S E; Scherm, H

    2015-04-01

    The purpose of this study was to determine the fine-scale genetic structure of populations of the brown rot pathogen Monilinia fructicola within individual peach tree canopies to better understand within-tree plant pathogen diversity and to complement previous work on spatiotemporal development of brown rot disease at the canopy level. Across 3 years in a total of six trees, we monitored disease development, collected isolates from every M. fructicola symptom during the course of the season, and created high-resolution three-dimensional maps of all symptom and isolate locations within individual canopies using an electromagnetic digitizer. Each canopy population (65 to 173 isolates per tree) was characterized using a set of 13 microsatellite markers and analyzed for evidence of spatial genetic autocorrelation among isolates during the epidemic phase of the disease. Results showed high genetic diversity (average uh=0.529) and high genotypic diversity (average D=0.928) within canopies. The percentage of unique multilocus genotypes within trees was greater for blossom blight isolates (78.2%) than for fruit rot isolates (51.3%), indicating a greater contribution of clonal reproduction during the preharvest epidemic. For fruit rot isolates, between 54.2 and 81.7% of isolates were contained in one to four dominant clonal genotypes per tree having at least 10 members. All six fruit rot populations showed positive and significant spatial genetic autocorrelation for distance classes between 0.37 and 1.48 m. Despite high levels of within-tree pathogen diversity, the contribution of locally available inoculum combined with short-distance dispersal is likely the main factor generating clonal population foci and associated spatial genetic clustering within trees.

  20. Disturbances can control fine-scale pedodiversity in old-growth forest: is the soil evolution theory disturbed as well?

    NASA Astrophysics Data System (ADS)

    Šamonil, P.; Vašíčková, I.; Daněk, P.; Janík, D.; Adam, D.

    2014-04-01

    Biota-soil interaction in natural ecosystems is an area of considerable research. Our hypothesis is that individual trees play a significant role through biomechanical and biochemical disturbances in soil formation in temperate forest resulting in complex spatial pattern of disturbance regimes and a close relationship between disturbance histories and soil units. In Žofínský Prales (Czech Republic) - the fourth oldest, continuously protected reserve in Europe and the only SIGEO site in continental Europe - in time and space we compared extensive dendrochronological, soil and pit-mound microtopography data on an area of 42.01 ha collected in 2008-2012. The datasets differ in terms of information complexity and length of memory. Tree cores contain complex information about disturbance history of the past 350 years, footprints of the specific tree uprooting disturbance can persist 1700 years, and soils representing extensive composite phenotype have been developing for at least the entire postglacial period (10 500 years). On average, 6.18-13.41% of the canopy was disturbed on individual soil units per decade. Even though the "backbone" of key events in the development of the forest ecosystem remained the same (e.g. the 1870s, 1880s and 1980s), the internal structure of disturbance history often differed among soil units; the most exceptional were Gleysols and Histosols, where important feedback from soil to trees was expected. However characteristics of treethrow dynamics as well as frequencies of stronger releases in core series significantly differed also along a gradient of terrestrial soil weathering and leaching (Haplic Cambisols - Dystric Cambisols - Entic Podzols - Albic Podzols). Results suggest the existence of several disturbance regimes within the forest controlling fine-scale pedodiversity.

  1. Disturbances can control fine-scale pedodiversity in old-growth forests: is the soil evolution theory disturbed as well?

    NASA Astrophysics Data System (ADS)

    Šamonil, P.; Vašíčková, I.; Daněk, P.; Janík, D.; Adam, D.

    2014-10-01

    Biota-soil interactions in natural ecosystems are the subject of considerable research. Our hypothesis is that individual trees play a significant role through biomechanical and biochemical disturbances affecting soil formation in temperate forests, resulting in a complex spatial pattern of disturbance regimes and a close relationship between disturbance histories and soil units. In Žofínský Prales (Czech Republic) - the fourth oldest, continuously protected reserve in Europe and the first site of global research network SIGEO (Smithsonian Institution Global Earth Observatories) in continental Europe - we compared extensive dendrochronological, soil and pit-mound microtopography data both temporally and spatially from an area of anthropogenically unaffected 42 ha collected from 2008-2012. These data sets differ in terms of information complexity and length of memory: tree cores contain complex information about the disturbance history of the past 350 years, footprints of disturbances from the uprooting of a specific tree can persist 1700 years, and soils represent an extensive composite phenotype that has been developing for at least the entire postglacial period (10 500 years). On average, 6.18-13.41% of the canopy on individual soil units was disturbed per decade. Even though the "backbone" of key events in the development of the forest ecosystem remained the same (e.g. the 1870s, 1880s and 1980s), the internal structure of disturbance history often differed among soil units; the most exceptional were Gleysols and Histosols, where important feedback from soil to trees was expected. However, the characteristics of treethrow dynamics as well as the frequencies of stronger releases in core series also significantly differed along a gradient of terrestrial soil weathering and leaching (Haplic Cambisols - Dystric Cambisols - Entic Podzols - Albic Podzols). These results suggest the existence of several disturbance regimes within the forest, controlling fine-scale

  2. Fine-scale geographic variation in photosynthetic-related traits of Picea glauca seedlings indicates local adaptation to climate.

    PubMed

    Benomar, Lahcen; Lamhamedi, Mohammed S; Villeneuve, Isabelle; Rainville, André; Beaulieu, Jean; Bousquet, Jean; Margolis, Hank A

    2015-08-01

    Climate-related variations in functional traits of boreal tree species can result both from physiological acclimation and genetic adaptation of local populations to their biophysical environment. To improve our understanding and prediction of the physiological and growth responses of populations to climate change, we studied the role of climate of seed origin in determining variations in functional traits and its implications for tree improvement programs for a commonly reforested boreal conifer, white spruce (Picea glauca (Moench) Voss). We evaluated growth, root-to-shoot ratio (R/S), specific leaf area (SLA), needle nitrogen (N(mass)), total non-structural carbohydrates (NSC) and photosynthetic traits of 3-year-old seedlings in a greenhouse experiment using seed from six seed orchards (SO) representing the different regions where white spruce is reforested in Québec. Height and total dry mass (TDM) were positively correlated with photosynthetic capacity (A(max)), stomatal conductance (g(s)) and mesophyll conductance (g(m)). Total dry mass, but not height growth, was strongly correlated with latitude of seed origin (SO) and associated climate variables. A(max), g(s), g(m) and more marginally, photosynthetic nitrogen-use efficiency (PNUE) were positively associated with the mean July temperature of the SO, while water use efficiency (WUE) was negatively associated. Maximum rates of carboxylation (V(cmax)), maximum rates of electron transport (J(max)), SLA, N(mass), NSC and R/S showed no pattern. Our results did not demonstrate a higher Amax for northern seed orchards, although this has been previously hypothesized as an adaptation mechanism for maintaining carbon uptake in northern regions. We suggest that gs, gm, WUE and PNUE are the functional traits most associated with fine-scale geographic clines and with the degree of local adaptation of white spruce populations to their biophysical environments. These geographic patterns may reflect in situ adaptive genetic

  3. Fine scale habitat use by age-1 stocked muskellunge and wild northern pike in an upper St. Lawrence River bay

    USGS Publications Warehouse

    Farrell, John M.; Kapuscinski, Kevin L.; Underwood, Harold

    2014-01-01

    Radio telemetry of stocked muskellunge (n = 6) and wild northern pike (n = 6) was used to track late summer and fall movements from a common release point in a known shared nursery bay to test the hypothesis that age-1 northern pike and stocked muskellunge segregate and have different habitat affinities. Water depth, temperature, substrate and aquatic vegetation variables were estimated for each muskellunge (n = 103) and northern pike (n = 131) position and nested ANOVA comparisons by species indicated differences in habitat use. Muskellunge exhibited a greater displacement from the release point and used habitat in shallower water depths (mean = 0.85 m, SE = 0.10) than northern pike (mean = 1.45 m, SE = 0.08). Both principal components analysis (PCA) and principal components ordination (PCO) were used to interpret underlying gradients relative to fish positions in two-dimensional space. Our analysis indicated that a separation of age-1 northern pike and muskellunge occurred 7 d post-release. This first principal component explained 48% of the variation in habitat use. Northern pike locations were associated with deeper habitats that generally had softer silt substrates and dense submersed vegetation. Muskellunge locations post-acclimation showed greater association with shallower habitats containing firmer sandy and clay substrates and emergent vegetation. The observed differences in habitat use suggest that fine-scale ecological separation occurred between these stocked muskellunge and wild northern pike, but small sample sizes and potential for individual variation limit extension of these conclusions. Further research is needed to determine if these patterns exist between larger samples of fishes over a greater range of habitats.

  4. High genetic diversity and fine-scale spatial structure in the marine flagellate Oxyrrhis marina (Dinophyceae) uncovered by microsatellite loci.

    PubMed

    Lowe, Chris D; Montagnes, David J S; Martin, Laura E; Watts, Phillip C

    2010-12-23

    Free-living marine protists are often assumed to be broadly distributed and genetically homogeneous on large spatial scales. However, an increasing application of highly polymorphic genetic markers (e.g., microsatellites) has provided evidence for high genetic diversity and population structuring on small spatial scales in many free-living protists. Here we characterise a panel of new microsatellite markers for the common marine flagellate Oxyrrhis marina. Nine microsatellite loci were used to assess genotypic diversity at two spatial scales by genotyping 200 isolates of O. marina from 6 broad geographic regions around Great Britain and Ireland; in one region, a single 2 km shore line was sampled intensively to assess fine-scale genetic diversity. Microsatellite loci resolved between 1-6 and 7-23 distinct alleles per region in the least and most variable loci respectively, with corresponding variation in expected heterozygosities (H(e)) of 0.00-0.30 and 0.81-0.93. Across the dataset, genotypic diversity was high with 183 genotypes detected from 200 isolates. Bayesian analysis of population structure supported two model populations. One population was distributed across all sampled regions; the other was confined to the intensively sampled shore, and thus two distinct populations co-occurred at this site. Whilst model-based analysis inferred a single UK-wide population, pairwise regional F(ST) values indicated weak to moderate population sub-division (0.01-0.12), but no clear correlation between spatial and genetic distance was evident. Data presented in this study highlight extensive genetic diversity for O. marina; however, it remains a substantial challenge to uncover the mechanisms that drive genetic diversity in free-living microorganisms.

  5. Combined Use of GPS and Accelerometry Reveals Fine Scale Three-Dimensional Foraging Behaviour in the Short-Tailed Shearwater

    PubMed Central

    Berlincourt, Maud; Angel, Lauren P.; Arnould, John P. Y.

    2015-01-01

    Determining the foraging behaviour of free-ranging marine animals is fundamental for assessing their habitat use and how they may respond to changes in the environment. However, despite recent advances in bio-logging technology, collecting information on both at-sea movement patterns and activity budgets still remains difficult in small pelagic seabird species due to the constraints of instrument size. The short-tailed shearwater, the most abundant seabird species in Australia (ca 23 million individuals), is a highly pelagic procellariiform. Despite its ecological importance to the region, almost nothing is known about its at-sea behaviour, in particular, its foraging activity. Using a combination of GPS and tri-axial accelerometer data-loggers, the fine scale three-dimensional foraging behaviour of 10 breeding individuals from two colonies was investigated. Five at-sea behaviours were identified: (1) resting on water, (2) flapping flight, (3) gliding flight, (4) foraging (i.e., surface foraging and diving events), and (5) taking-off. There were substantial intra- and inter- individual variations in activity patterns, with individuals spending on average 45.8% (range: 17.1–70.0%) of time at sea resting on water and 18.2% (range: 2.3–49.6%) foraging. Individuals made 76.4 ± 65.3 dives (range: 8–237) per foraging trip (mean duration 9.0 ± 1.9 s), with dives also recorded during night-time. With the continued miniaturisation of recording devices, the use of combined data-loggers could provide us with further insights into the foraging behaviour of small procellariiforms, helping to better understand interactions with their prey. PMID:26439491

  6. Implications of Fine-Scale Geochemical Depth Trends in the Active Layer of a Continuous Permafrost Landscape near Barrow, Alaska

    NASA Astrophysics Data System (ADS)

    Newman, B. D.; Heikoop, J. M.; Throckmorton, H.; Wilson, C. J.; Wullschleger, S. D.

    2014-12-01

    As part of the US DOE, Office of Science, Next Generation Ecosystem Experiment-Arctic project, we have been using environmental tracers (naturally occurring stable isotopes and geochemical species) to understand hydrological and geochemical processes within polygonal ground in a continuous permafrost area in the Arctic coastal plain. The study site is characterized by a thin zone of active layer development (typically <50 cm). This condition makes it difficult to understand development of geochemical gradients between the near surface and the frost line because traditional sampling using pumping causes mixing which can obscure depth gradients. We have applied a passive approach by using a series of diffusion cells that are installed at different depths within the active zone. The cells are filled with deionized water and over time, they equilibrate with the adjacent active layer water chemistry (ions diffuse into the cell, but the water in the cell does not exchange). Using this approach we have collected a series of fine resolution depth profiles within saturated zones in the active layer. Results over the last three years often show well-developed and sometimes substantial geochemical gradients for multiple analytes. Such gradients imply minimal vertical mixing within the active zone. Reductions in permeability with depth and lack of strong hydrological gradients likely limit vertical mixing. We also noted that the strength of the depth gradients varies across the landscape reflecting differences related to microtopography and drainage conditions. These results suggest that there are likely to be substantial fine-scale depth variations in biogeochemical processes such as methane and carbon dioxide production. Hydrological models should also reflect limited mixing with depth.

  7. Seasonal effects and fine-scale population dynamics of Aedes taeniorhynchus, a major disease vector in the Galapagos Islands.

    PubMed

    Bataille, Arnaud; Cunningham, Andrew A; Cruz, Marilyn; Cedeno, Virna; Goodman, Simon J

    2010-10-01

    Characterization of the fine-scale population dynamics of the mosquito Aedes taeniorhynchus is needed to improve our understanding of its role as a disease vector in the Galapagos Islands. We used microsatellite data to assess the genetic structure of coastal and highland mosquito populations and patterns of gene flow between the two habitats through time on Santa Cruz Island. In addition, we assessed possible associations of mosquito abundance and genetic diversity with environmental variables. The coastal and highland mosquito populations were highly differentiated from each other all year round, with some gene flow detected only during periods of increased precipitation. The results support the hypothesis that selection arising from ecological differences between habitats is driving adaptation and divergence in A. taeniorhynchus, and maintaining long-term genetic differentiation of the populations against gene flow. The highland and lowland populations may constitute an example of incipient speciation in progress. Highland populations were characterized by lower observed heterozygosity and allelic richness, suggesting a founder effect and/or lower breeding site availability in the highlands. A lack of reduction in genetic diversity over time in highland populations suggests that they survive dry periods as dormant eggs. Association between mosquito abundance and precipitation was strong in the highlands, whereas tide height was the main factor affecting mosquito abundance on the coast. Our findings suggests differences in the infection dynamics of mosquito-borne parasites in the highlands compared to the coast, and a higher risk of mosquito-driven disease spread across these habitats during periods of increased precipitation.

  8. Combined Use of GPS and Accelerometry Reveals Fine Scale Three-Dimensional Foraging Behaviour in the Short-Tailed Shearwater.

    PubMed

    Berlincourt, Maud; Angel, Lauren P; Arnould, John P Y

    2015-01-01

    Determining the foraging behaviour of free-ranging marine animals is fundamental for assessing their habitat use and how they may respond to changes in the environment. However, despite recent advances in bio-logging technology, collecting information on both at-sea movement patterns and activity budgets still remains difficult in small pelagic seabird species due to the constraints of instrument size. The short-tailed shearwater, the most abundant seabird species in Australia (ca 23 million individuals), is a highly pelagic procellariiform. Despite its ecological importance to the region, almost nothing is known about its at-sea behaviour, in particular, its foraging activity. Using a combination of GPS and tri-axial accelerometer data-loggers, the fine scale three-dimensional foraging behaviour of 10 breeding individuals from two colonies was investigated. Five at-sea behaviours were identified: (1) resting on water, (2) flapping flight, (3) gliding flight, (4) foraging (i.e., surface foraging and diving events), and (5) taking-off. There were substantial intra- and inter- individual variations in activity patterns, with individuals spending on average 45.8% (range: 17.1-70.0%) of time at sea resting on water and 18.2% (range: 2.3-49.6%) foraging. Individuals made 76.4 ± 65.3 dives (range: 8-237) per foraging trip (mean duration 9.0 ± 1.9 s), with dives also recorded during night-time. With the continued miniaturisation of recording devices, the use of combined data-loggers could provide us with further insights into the foraging behaviour of small procellariiforms, helping to better understand interactions with their prey.

  9. Collective phase description of oscillatory convection

    SciTech Connect

    Kawamura, Yoji; Nakao, Hiroya

    2013-12-15

    We formulate a theory for the collective phase description of oscillatory convection in Hele-Shaw cells. It enables us to describe the dynamics of the oscillatory convection by a single degree of freedom which we call the collective phase. The theory can be considered as a phase reduction method for limit-cycle solutions in infinite-dimensional dynamical systems, namely, stable time-periodic solutions to partial differential equations, representing the oscillatory convection. We derive the phase sensitivity function, which quantifies the phase response of the oscillatory convection to weak perturbations applied at each spatial point, and analyze the phase synchronization between two weakly coupled Hele-Shaw cells exhibiting oscillatory convection on the basis of the derived phase equations.

  10. Not so different after all: The same oscillatory processes support different types of attention.

    PubMed

    Frey, Julia Natascha; Ruhnau, Philipp; Weisz, Nathan

    2015-11-11

    Scientific research from the last two decades has provided a vast amount of evidence that brain oscillations reflect physiological activity enabling diverse cognitive processes. The goal of this review is to give a broad empirical and conceptual overview of how ongoing oscillatory activity may support attention processes. Keeping in mind that definitions of cognitive constructs like attention are prone to being blurry and ambiguous, the present review focuses mainly on the neural correlates of 'top-down' attention deployment. In particular, we will discuss modulations of (ongoing) oscillatory activity during spatial, temporal, selective, and internal attention. Across these seemingly distinct attentional domains, we will summarize studies showing the involvement of two oscillatory processes observed during attention deployment: power modulations mainly in the alpha band, and phase modulations in lower frequency bands. This article is part of a Special Issue entitled SI: Prediction and Attention.

  11. Oscillatory Serotonin Function in Depression

    PubMed Central

    Salomon, Ronald M.; Cowan, Ronald L.

    2013-01-01

    Oscillations in brain activities with periods of minutes to hours may be critical for normal mood behaviors. Ultradian (faster than circadian) rhythms of mood behaviors and associated central nervous system activities are altered in depression. Recent data suggest that ultradian rhythms in serotonin (5HT) function also change in depression. In two separate studies, 5HT metabolites in cerebrospinal fluid (CSF) were measured every 10 m for 24 h before and after chronic antidepressant treatment. Antidepressant treatments were associated with enhanced ultradian amplitudes of CSF metabolite levels. Another study used resting-state functional magnetic resonance imaging (fMRI)to measure amplitudes of dorsal raphé activation cycles following sham or active dietary depletions of the 5HT precursor (tryptophan). During depletion, amplitudes of dorsal raphé activation cycles increased with rapid 6 s periods (about 0.18 Hz)while functional connectivity weakened between dorsal raphé and thalamus at slower periods of 20 s (0.05 Hz). A third approach studied MDMA (ecstasy) users because of their chronically diminished 5HT function compared to non-MDMA polysubstance users (Karageorgiou et al., 2009). Compared to a non-MDMA using cohort, MDMA users showed diminished fMRI intra-regional coherence in motor regions along with altered functional connectivity, again suggesting effects of altered 5HT oscillatory function. These data support a hypothesis that qualities of ultradian oscillations in 5HT function may critically influence moods and behaviors. Dysfunctional 5HT rhythms in depression may be a common endpoint and biomarker for depression, linking dysfunction of slow brain network oscillators to 5HT mechanisms affected by commonly available treatments. 5HT oscillatory dysfunction may define illness subtypes and predict responses to serotonergic agents. Further studies of 5HT oscillations in depression are indicated. PMID:23592367

  12. Parametric oscillatory instability in a signal-recycled LIGO interferometer

    SciTech Connect

    Vyatchanin, S P; Strigin, S E

    2007-12-31

    The undesirable effect of parametric oscillatory instability in a LIGO (Laser Interferometer Gravitational-Wave Observatory) laser gravitational-wave antenna with a signal-recirculation mirror is analysed in detail. The instability is manifested in excitation of the Stokes optical mode and elastic mechanical mode of the mirror. It is shown that, if the eigenfrequencies of Fabry-Perot resonators in the interferometer arms are different, the parametric instability is quite small due to a small passband band width. (fifth seminar in memory of d.n. klyshko)

  13. Frontal oscillatory dynamics predict feedback learning and action adjustment.

    PubMed

    van de Vijver, Irene; Ridderinkhof, K Richard; Cohen, Michael X

    2011-12-01

    Frontal oscillatory dynamics in the theta (4-8 Hz) and beta (20-30 Hz) frequency bands have been implicated in cognitive control processes. Here we investigated the changes in coordinated activity within and between frontal brain areas during feedback-based response learning. In a time estimation task, participants learned to press a button after specific, randomly selected time intervals (300-2000 msec) using the feedback after each button press (correct, too fast, too slow). Consistent with previous findings, theta-band activity over medial frontal scalp sites (presumably reflecting medial frontal cortex activity) was stronger after negative feedback, whereas beta-band activity was stronger after positive feedback. Theta-band power predicted learning only after negative feedback, and beta-band power predicted learning after positive and negative feedback. Furthermore, negative feedback increased theta-band intersite phase synchrony (a millisecond resolution measure of functional connectivity) among right lateral prefrontal, medial frontal, and sensorimotor sites. These results demonstrate the importance of frontal theta- and beta-band oscillations and intersite communication in the realization of reinforcement learning.

  14. Characterizing Oscillatory Bursts in Single-Trial EEG Data

    NASA Technical Reports Server (NTRS)

    Knuth, K. H.; Shah, A. S.; Lakatos, P.; Schroeder, C. E.

    2004-01-01

    Oscillatory bursts in numerous bands ranging from low (theta) to high frequencies (e.g., gamma) undoubtedly play an important role in cortical dynamics. Largely because of the inadequacy of existing analytic techniques. however, oscillatory bursts and their role in cortical processing remains poorly understood. To study oscillatory bursts effectively one must be able to isolate them and characterize them in the single trial. We describe a series of straightforward analysis techniques that produce useful indices of burst characteristics. First, stimulus-evoked responses are estimated using Differentially Variable Component Analysis (dVCA), and are subtracted from the single-trial. The single-trial characteristics of the evoked responses are stored to identify possible correlations with burst activity. Time-frequency (T-F), or wavelet, analyses are then applied to the single trial residuals. While T-F plots have been used in recent studies to identify and isolate bursts, we go further by fitting each burst in the T-F plot with a two-dimensional Gaussian. This provides a set of burst characteristics, such as, center time. burst duration, center frequency. frequency dispersion. and amplitude, all of which contribute to the accurate characterization of the individual burst. The burst phase can also be estimated. Burst characteristics can be quantified with several standard techniques (e.g.. histogramming and clustering), as well as Bayesian techniques (e.g., blocking) to allow a more parametric description analysis of the characteristics of oscillatory bursts, and the relationships of specific parameters to cortical excitability and stimulus integration.

  15. NetView: a high-definition network-visualization approach to detect fine-scale population structures from genome-wide patterns of variation.

    PubMed

    Neuditschko, Markus; Khatkar, Mehar S; Raadsma, Herman W

    2012-01-01

    High-throughput sequencing and single nucleotide polymorphism (SNP) genotyping can be used to infer complex population structures. Fine-scale population structure analysis tracing individual ancestry remains one of the major challenges. Based on network theory and recent advances in SNP chip technology, we investigated an unsupervised network clustering method called Super Paramagnetic Clustering (Spc). When applied to whole-genome marker data it identifies the natural divisions of groups of individuals into population clusters without use of prior ancestry information. Furthermore, we optimised an analysis pipeline called NetView, a high-definition network visualization, starting with computation of genetic distance, followed clustering using Spc and finally visualization of clusters with Cytoscape. We compared NetView against commonly used methodologies including Principal Component Analyses (PCA) and a model-based algorithm, Admixture, on whole-genome-wide SNP data derived from three previously described data sets: simulated (2.5 million SNPs, 5 populations), human (1.4 million SNPs, 11 populations) and cattle (32,653 SNPs, 19 populations). We demonstrate that individuals can be effectively allocated to their correct population whilst simultaneously revealing fine-scale structure within the populations. Analyzing the human HapMap populations, we identified unexpected genetic relatedness among individuals, and population stratification within the Indian, African and Mexican samples. In the cattle data set, we correctly assigned all individuals to their respective breeds and detected fine-scale population sub-structures reflecting different sample origins and phenotypes. The NetView pipeline is computationally extremely efficient and can be easily applied on large-scale genome-wide data sets to assign individuals to particular populations and to reproduce fine-scale population structures without prior knowledge of individual ancestry. NetView can be used on any

  16. Two behavioural traits promote fine-scale species segregation and moderate hybridisation in a recovering sympatric fur seal population

    PubMed Central

    2010-01-01

    Background In systems where two or more species experience secondary contact, behavioural factors that regulate interspecific gene flow may be important for maintaining species boundaries and reducing the incidence of hybridisation. At subantarctic Macquarie Island, two species of fur seal breed in close proximity to one another, hybridise at very high levels (up to 21% of hybrid pups are born annually), yet retain discrete gene pools. Using spatial and genetic information collected for pups and adults over twelve years, we assessed two behavioural traits - inter-annual site fidelity and differences in habitat use between the species - as possible contributors to the maintenance of this species segregation. Further, we explored the breakdown of these traits in pure-species individuals and hybrids. Results We found virtually complete spatial segregation of the parental species, with only one exception; a single territory that contained adults of both species and also the highest concentration of hybrid pups. The spatial distribution of each species was closely linked to habitat type (pebbled vs boulder beaches), with members of each species breeding almost exclusively on one type or the other but hybrids breeding on both or at the junction between habitats. Inter-annual site fidelity was high for both sexes of pure-species adults, with 66% of females and all males returning to the same territory or a neighbouring one in different years. An important consequence for pure females of breeding on the 'wrong' habitat type, and thus in a heterospecific aggregation, was the production of hybrid pups. Low habitat fidelity of hybrid females facilitated bi-directional backcrossing, resulting in more diverse hybrid offspring. Conclusion In a disturbed system where two sympatric fur seal species breed in close proximity, discrete gene pools are retained by extremely fine-scale and strong spatial segregation of the species. Two behavioural traits were found to be important in

  17. Elastic Full Waveform Inversion reveals the fine-scale structure of Axial Volcano on the Juan de Fuca Ridge

    NASA Astrophysics Data System (ADS)

    Arnulf, A. F.; Harding, A. J.; Kent, G.

    2012-12-01

    Axial volcano (sometimes referred to as "Axial seamount" or "Axial") is located at 46N, 130W at the intersection of the Juan de Fuca Ridge and the Cobb-Eickelberg seamount chain. It is the most recent eruptive center of the Cobb hotspot, which last erupted in 2011. The volcano rises ~700 m above the adjacent ridge axis and its summit features a U-shaped caldera open to the southeast, which hosts an active hydrothermal field and very young lava flows. Located at the junction of a mid-ocean ridge and a volcanic hotspot, Axial volcano is atypical and its internal structure remains poorly understood. Here, we present results from an elastic full waveform inversion (FWI) along multiple seismic lines that span the whole volcano. We have used a multi-stage FWI, inverting successively wide-angle reflections and refractions arrivals from downward extrapolated streamer data, then windowed short offset reflections from the underlying magma chamber. Our final models show fine scale velocity structures with spatial resolutions of tens of meters. Our results indicate that Layer 2A thickness is extremely heterogeneous (350-900 m) within the volcano with abrupt vertical throws of >300 m beneath the caldera walls that suggests the tectonic thinning of a geologically defined Layer 2A. Interestingly, Layer 2A appears to be extremely thin beneath the active hydrothermal field and the most recent lava flows, on the southeast end of the caldera, where sheeted dikes might lay <100 m beneath the seafloor. On the other hand, the nearby caldera center is filled by successive lava sequences (~450 m thick) that further appear to be micro faulted, suggesting a constant interplay between magmatic and tectonic processes. Surface velocities show limited variation over the whole volcano and may suggest relative recent formation, considering the rapid increase in layer 2A velocity with age. Finally, our velocity structures image a wide and complex magma chamber system beneath the volcano at depth

  18. Fine Scale Structure of Low and Ultra-Low Velocity Patches in the Lowermost Mantle: Some Case Studies

    NASA Astrophysics Data System (ADS)

    Yuan, K.; Romanowicz, B. A.; French, S.

    2015-12-01

    The lowermost part of the mantle, which is roughly halfway to the center of the earth, plays a key role as a thermal and chemical boundary layer between the solid, silicate mantle and fluid, iron outer core. Constraining the seismic velocity structure in this region provides important insights on mantle dynamics, and core-mantle interactions. Recently, global shear wave velocity tomography has confirmed the presence of broad plume conduits extending vertically through the lower mantle in the vicinity of major hotspots (SEMUCB-WM1, French and Romanowicz, 2015). These conduits are rooted in D" in patches of strongly reduced shear velocity, at least some of which, such as Hawaii, appear to contain known ultra low velocity zones (e.g. Cottaar and Romanowicz, 2012). We seek to determine whether these patches generally contain ULVZs, and to contrast them with less extreme structures such as the PERM anomaly (Lekic et al., 2012). Because global tomography cannot resolve such fine scale structure, we apply forward modeling of higher frequency (10-20s) Sdiff waveforms in 3D complex structures using the Spectral Element Method. We focus on Iceland, Hawaii and the PERM anomaly, and Sdiff observations at USArray and/or dense broadband arrays in Europe. In all three cases, Sdiff waveforms are clearly distorted by these anomalies, with either a complex coda and/or evidence for amplitude focusing. As a start, we design simple cylindrical models of shear velocity reduction, and contrast the best fitting ones at each location considered in terms of diameter, height above the core-mantle boundary and strength of velocity reduction. We refine previously obtained models for Hawaii and the Perm Anomaly. For Iceland, the waveforms show a strong azimuthally dependent post-cursor, with maximum travel time delay of ~20s and focusing effects. The preliminary best fitting model shows a structure of 700km in diameter, ~15% reduction in shear wave velocity, extending ~40 km above the core

  19. Upper ocean fine-scale features in synthetic aperture radar imagery. Part I: Simultaneous satellite and in-situ measurements

    NASA Astrophysics Data System (ADS)

    Soloviev, A.; Maingot, C.; Matt, S.; Fenton, J.; Lehner, S.; Brusch, S.; Perrie, W. A.; Zhang, B.

    2011-12-01

    The new generation of synthetic aperture radar (SAR) satellites provides high resolution images that open new opportunities for identifying and studying fine features in the upper ocean. The problem is, however, that SAR images of the sea surface can be affected by atmospheric phenomena (rain cells, fronts, internal waves, etc.). Implementation of in-situ techniques in conjunction with SAR is instrumental for discerning the origin of features on the image. This work is aimed at the interpretation of natural and artificial features in SAR images. These features can include fresh water lenses, sharp frontal interfaces, internal wave signatures, as well as slicks of artificial and natural origin. We have conducted field experiments in the summer of 2008 and 2010 and in the spring of 2011 to collect in-situ measurements coordinated with overpasses of the TerraSAR-X, RADARSAT-2, ALOS PALSAR, and COSMO SkyMed satellites. The in-situ sensors deployed in the Straits of Florida included a vessel-mounted sonar and CTD system to record near-surface data on stratification and frontal boundaries, a bottom-mounted Nortek AWAC system to gather information on currents and directional wave spectra, an ADCP mooring at a 240 m isobath, and a meteorological station. A nearby NOAA NEXRAD Doppler radar station provided a record of rainfall in the area. Controlled releases of menhaden fish oil were performed from our vessel before several satellite overpasses in order to evaluate the effect of surface active materials on visibility of sea surface features in SAR imagery under different wind-wave conditions. We found evidence in the satellite images of rain cells, squall lines, internal waves of atmospheric and possibly oceanic origin, oceanic frontal interfaces and submesoscale eddies, as well as anthropogenic signatures of ships and their wakes, and near-shore surface slicks. The combination of satellite imagery and coordinated in-situ measurements was helpful in interpreting fine-scale

  20. Arctic fungal communities associated with roots of Bistorta vivipara do not respond to the same fine-scale edaphic gradients as the aboveground vegetation.

    PubMed

    Mundra, Sunil; Halvorsen, Rune; Kauserud, Håvard; Müller, Eike; Vik, Unni; Eidesen, Pernille B

    2015-03-01

    Soil conditions and microclimate are important determinants of the fine-scale distribution of plant species in the Arctic, creating locally heterogeneous vegetation. We hypothesize that root-associated fungal (RAF) communities respond to the same fine-scale environmental gradients as the aboveground vegetation, creating a coherent pattern between aboveground vegetation and RAF. We explored how RAF communities of the ectomycorrhizal (ECM) plant Bistorta vivipara and aboveground vegetation structure of arctic plants were affected by biotic and abiotic variables at 0.3-3.0-m scales. RAF communities were determined using pyrosequencing. Composition and spatial structure of RAF and aboveground vegetation in relation to collected biotic and abiotic variables were analysed by ordination and semi-variance analyses. The vegetation was spatially structured along soil C and N gradients, whereas RAF lacked significant spatial structure. A weak relationship between RAF community composition and the cover of two ECM plants, B. vivipara and S. polaris, was found, and RAF richness increased with host root length and root weight. Results suggest that the fine-scale spatial structure of RAF communities of B. vivipara and the aboveground vegetation are driven by different factors. At fine spatial scales, neighbouring ECM plants may affect RAF community composition, whereas soil nutrients gradients structure the vegetation.

  1. SYSTEMATIC MOTION OF FINE-SCALE JETS AND SUCCESSIVE RECONNECTION IN SOLAR CHROMOSPHERIC ANEMONE JET OBSERVED WITH THE SOLAR OPTICAL TELESCOPE/HINODE

    SciTech Connect

    Singh, K. A. P.; Nishida, K.; Shibata, K.; Isobe, H.

    2012-11-20

    The Solar Optical Telescope (SOT) on board Hinode allows observations with high spatiotemporal resolution and stable image quality. A {lambda}-shaped chromospheric anemone jet was observed in high resolution with SOT/Hinode. We found that several fine-scale jets were launched from one end of the footpoint to the other. These fine-scale jets ({approx}1.5-2.5 Mm) gradually move from one end of the footpoint to the other and finally merge into a single jet. This process occurs recurrently, and as time progresses the jet activity becomes more and more violent. The time evolution of the region below the jet in Ca II H filtergram images taken with SOT shows that various parts (or knots) appear at different positions. These bright knots gradually merge into each other during the maximum phase. The systematic motion of the fine-scale jets is observed when different knots merge into each other. Such morphology would arise due to the emergence of a three-dimensional twisted flux rope in which the axial component (or the guide field) appears in the later stages of the flux rope emergence. The partial appearance of the knots could be due to the azimuthal magnetic field that appears during the early stage of the flux rope emergence. If the guide field is strong and reconnection occurs between the emerging flux rope and an ambient magnetic field, this could explain the typical feature of systematic motion in chromospheric anemone jets.

  2. Systematic Motion of Fine-scale Jets and Successive Reconnection in Solar Chromospheric Anemone Jet Observed with the Solar Optical Telescope/Hinode

    NASA Astrophysics Data System (ADS)

    Singh, K. A. P.; Isobe, H.; Nishida, K.; Shibata, K.

    2012-11-01

    The Solar Optical Telescope (SOT) on board Hinode allows observations with high spatiotemporal resolution and stable image quality. A λ-shaped chromospheric anemone jet was observed in high resolution with SOT/Hinode. We found that several fine-scale jets were launched from one end of the footpoint to the other. These fine-scale jets (~1.5-2.5 Mm) gradually move from one end of the footpoint to the other and finally merge into a single jet. This process occurs recurrently, and as time progresses the jet activity becomes more and more violent. The time evolution of the region below the jet in Ca II H filtergram images taken with SOT shows that various parts (or knots) appear at different positions. These bright knots gradually merge into each other during the maximum phase. The systematic motion of the fine-scale jets is observed when different knots merge into each other. Such morphology would arise due to the emergence of a three-dimensional twisted flux rope in which the axial component (or the guide field) appears in the later stages of the flux rope emergence. The partial appearance of the knots could be due to the azimuthal magnetic field that appears during the early stage of the flux rope emergence. If the guide field is strong and reconnection occurs between the emerging flux rope and an ambient magnetic field, this could explain the typical feature of systematic motion in chromospheric anemone jets.

  3. Higher fine-scale genetic structure in peripheral than in core populations of a long-lived and mixed-mating conifer - eastern white cedar (Thuja occidentalis L.)

    PubMed Central

    2012-01-01

    Background Fine-scale or spatial genetic structure (SGS) is one of the key genetic characteristics of plant populations. Several evolutionary and ecological processes and population characteristics influence the level of SGS within plant populations. Higher fine-scale genetic structure may be expected in peripheral than core populations of long-lived forest trees, owing to the differences in the magnitude of operating evolutionary and ecological forces such as gene flow, genetic drift, effective population size and founder effects. We addressed this question using eastern white cedar (Thuja occidentalis) as a model species for declining to endangered long-lived tree species with mixed-mating system. Results We determined the SGS in two core and two peripheral populations of eastern white cedar from its Maritime Canadian eastern range using six nuclear microsatellite DNA markers. Significant SGS ranging from 15 m to 75 m distance classes was observed in the four studied populations. An analysis of combined four populations revealed significant positive SGS up to the 45 m distance class. The mean positive significant SGS observed in the peripheral populations was up to six times (up to 90 m) of that observed in the core populations (15 m). Spatial autocorrelation coefficients and correlograms of single and sub-sets of populations were statistically significant. The extent of within-population SGS was significantly negatively correlated with all genetic diversity parameters. Significant heterogeneity of within-population SGS was observed for 0-15 m and 61-90 m between core and peripheral populations. Average Sp, and gene flow distances were higher in peripheral (Sp = 0.023, σg = 135 m) than in core (Sp = 0.014, σg = 109 m) populations. However, the mean neighborhood size was higher in the core (Nb = 82) than in the peripheral (Nb = 48) populations. Conclusion Eastern white cedar populations have significant fine-scale genetic structure at short distances. Peripheral

  4. Control of oscillatory thermocapillary convection in microgravity

    NASA Technical Reports Server (NTRS)

    Neitzel, G. Paul

    1994-01-01

    Laboratory and numerical experiments are underway to generate, and subsequently suppress, oscillatory thermocapillary convection in thin layer of silicone oil. The laboratory experiments have succeeded in characterizing the flow state in a limited range of Bond number-Marangoni number space of interest, identifying states of: (1) steady, unicellular, thermocapillary convection; (2) steady, multicellular, thermocapillary convection; and (3) oscillatory thermocapillary convection. Comparisons between experimental results and stability computations for a related basic state will be made.

  5. Studies of oscillatory combustion and fuel vaporization

    NASA Technical Reports Server (NTRS)

    Borman, G. L.; Myers, P. S.; Uyehara, O. A.

    1972-01-01

    Research projects involving oscillatory combustion and fuel vaporization are reported. Comparisons of experimental and theoretical droplet vaporization histories under ambient conditions such that the droplet may approach its thermodynamic critical point are presented. Experimental data on instantaneous heat transfer from a gas to a solid surface under conditions of oscillatory pressure with comparisons to an unsteady one-dimensional model are analyzed. Droplet size and velocity distribution in a spray as obtained by use of a double flash fluorescent method were investigated.

  6. Long Term Variability of the Canary Current Upwelling System inferred from Fine Scale Analysis of Satellite-derived SST

    NASA Astrophysics Data System (ADS)

    Relvas, P.; Luis, J. M.; Silva, P. L.; Santos, A. M.

    2011-12-01

    SST trends were created upon the slopes of the linear fits applied to each pixel. They show a generalized warming of the entire region. However, alternate patches of significantly different warming rates are observed, ranging from large scale down to mesoscale sized features that corresponds to known oceanographic structures, like coastal upwelling features. Going deep into short spatial scales, the spatial heterogeneities of the ocean became evident, revealing the importance of the mesoscale in the response to the global warming. The detail in the warming variability obtained here results in a large extent from the fine scale analysis and the numerical processing carefully designed to avoid trend bias in the climatological studies. Kilpatrick, K., G. Podestá, and R. Evans (2001), Overview of the NOAA/NASA Pathfinder algorithm for sea surface temperature and associated match-up database, J. Geophys. Res., 106, 9179-919

  7. Control of Cavity Resonance Using Oscillatory Blowing

    NASA Technical Reports Server (NTRS)

    Scarfe, Alison Lamp; Chokani, Ndaona

    2000-01-01

    The near-zero net mass oscillatory blowing control of a subsonic cavity flow has been experimentally investigated. An actuator was designed and fabricated to provide both steady and oscillatory blowing over a range of blowing amplitudes and forcing frequencies. The blowing was applied just upstream of the cavity front Wall through interchangeable plate configurations These configurations enabled the effects of hole size, hole shape, and blowing angle to be examined. A significant finding is that in terms of the blowing amplitude, the near zero net mass oscillatory blowing is much more effective than steady blowing; momentum coefficients Lip two orders of magnitude smaller than those required for steady blowing are sufficient to accomplish the same control of cavity resonance. The detailed measurements obtained in the experiment include fluctuating pressure data within the cavity wall, and hot-wire measurements of the cavity shear layer. Spectral and wavelet analysis techniques are applied to understand the dynamics and mechanisms of the cavity flow with control. The oscillatory blowing, is effective in enhancing the mixing in the cavity shear layer and thus modifying the feedback loop associated with the cavity resonance. The nonlinear interactions in the cavity flow are no longer driven by the resonant cavity modes but by the forcing associated with the oscillatory blowing. The oscillatory blowing does not suppress the mode switching behavior of the cavity flow, but the amplitude modulation is reduced.

  8. Advantages of Oscillatory Hydraulic Tomography

    NASA Astrophysics Data System (ADS)

    Kitanidis, P. K.; Bakhos, T.; Cardiff, M. A.; Barrash, W.

    2012-12-01

    Characterizing the subsurface is significant for most hydrogeologic studies, such as those involving site remediation and groundwater resource explo¬ration. A variety of hydraulic and geophysical methods have been developed to estimate hydraulic conductivity and specific storage. Hydraulic methods based on the analysis of conventional pumping tests allow the estimation of conductivity and storage without need for approximate petrophysical relations, which is an advantage over most geophysical methods that first estimate other properties and then infer values of hydraulic parameters. However, hydraulic methods have the disadvantage that the head-change signal decays with distance from the pumping well and thus becomes difficult to separate from noise except in close proximity to the source. Oscillatory hydraulic tomography (OHT) is an emerging technology to im¬age the subsurface. This method utilizes the idea of imposing sinusoidally varying pressure or discharge signals at several points, collecting head observations at several other points, and then processing these data in a tomographic fashion to estimate conductivity and storage coefficients. After an overview of the methodology, including a description of the most important potential advantages and challenges associated with this approach, two key promising features of the approach will be discussed. First, the signal at an observation point is orthogonal to and thus can be separated from nuisance inputs like head fluctuation from production wells, evapotranspiration, irrigation, and changes in the level of adjacent streams. Second, although the signal amplitude may be weak, one can extract the phase and amplitude of the os¬cillatory signal by collecting measurements over a longer time, thus compensating for the effect of large distance through longer sampling period.

  9. Fine-Scale Mapping by Spatial Risk Distribution Modeling for Regional Malaria Endemicity and Its Implications under the Low-to-Moderate Transmission Setting in Western Cambodia

    PubMed Central

    Okami, Suguru; Kohtake, Naohiko

    2016-01-01

    The disease burden of malaria has decreased as malaria elimination efforts progress. The mapping approach that uses spatial risk distribution modeling needs some adjustment and reinvestigation in accordance with situational changes. Here we applied a mathematical modeling approach for standardized morbidity ratio (SMR) calculated by annual parasite incidence using routinely aggregated surveillance reports, environmental data such as remote sensing data, and non-environmental anthropogenic data to create fine-scale spatial risk distribution maps of western Cambodia. Furthermore, we incorporated a combination of containment status indicators into the model to demonstrate spatial heterogeneities of the relationship between containment status and risks. The explanatory model was fitted to estimate the SMR of each area (adjusted Pearson correlation coefficient R2 = 0.774; Akaike information criterion AIC = 149.423). A Bayesian modeling framework was applied to estimate the uncertainty of the model and cross-scale predictions. Fine-scale maps were created by the spatial interpolation of estimated SMRs at each village. Compared with geocoded case data, corresponding predicted values showed conformity [Spearman’s rank correlation r = 0.662 in the inverse distance weighed interpolation and 0.645 in ordinal kriging (95% confidence intervals of 0.414–0.827 and 0.368–0.813, respectively), Welch’s t-test; Not significant]. The proposed approach successfully explained regional malaria risks and fine-scale risk maps were created under low-to-moderate malaria transmission settings where reinvestigations of existing risk modeling approaches were needed. Moreover, different representations of simulated outcomes of containment status indicators for respective areas provided useful insights for tailored interventional planning, considering regional malaria endemicity. PMID:27415623

  10. Broad- to fine-scale population genetic patterning in the smallmouth bass Micropterus dolomieu across the Laurentian Great Lakes and beyond: an interplay of behaviour and geography.

    PubMed

    Stepien, Carol A; Murphy, Douglas J; Strange, Rex Meade

    2007-04-01

    Analysis of population genetic relationships reveals the signatures of current processes such as spawning behaviour and migration, as well as those of historical events including vicariance and climate change. This study examines these signatures through testing broad- to fine-scale genetic patterns among smallmouth bass Micropterus dolomieu spawning populations across their native Great Lakes range and outgroup areas, with fine-scale concentration in Lake Erie. Our primary hypotheses include whether genetic patterns result from behavioural and/or geographical isolation, specifically: (i) Are spawning groups in interconnected waterways genetically separable? (ii) What is the degree of isolation across and among lakes, basins, and tributaries? (iii) Do genetic divergences correspond to geographical distances? and (iv) Are historical colonization patterns from glacial refugia retained? Variation at eight nuclear microsatellite DNA loci are analysed for 666 smallmouth bass from 28 locations, including 425 individuals in Lake Erie; as well as Lakes Superior, Huron, and Ontario, and outgroups from the Mississippi, Ohio, St. Lawrence, and Hudson River drainages. Results reveal marked genetic differences among lake and river populations, as well as surprisingly high divergences among closely spaced riverine sites. Results do not fit an isolation-by-geographical-distance prediction for fine-scale genetic patterns, but show weak correspondence across large geographical scales. Genetic relationships thus are consistent with hypotheses regarding divergent origins through vicariance in glacial refugia, followed by colonization pathways establishing modern-day Great Lakes populations, and maintenance through behavioural site fidelity. Conservation management practices thus should preserve genetic identity and unique characters among smallmouth bass populations.

  11. Fine-scale heat flow, shallow heat sources, and decoupled circulation systems at two sea-floor hydrothermal sites, Middle Valley, northern Juan de Fuca Ridge

    SciTech Connect

    Stein, J.S.; Fisher, A.T.; Langseth, M.; Jin, W.; Iturrino, G.; Davis, E.

    1998-12-01

    Fine-scale heat-flow patterns at two areas of active venting in Middle Valley, a sedimented rift on the northern Juan de Fuca Ridge, provide thermal evidence of shallow hydrothermal reservoirs beneath the vent fields. The extreme variability of heat flow is explained by conductive heating immediately adjacent to vents and shallow circulation within sediments above the reservoir. This secondary circulation is hydrologically separated from the deeper system feeding the vents by a shallow conductive lid within the sediments. A similar separation of shallow and deep circulation may also occur at sediment-free ridge-crest hydrothermal environments.

  12. How brain oscillations form memories--a processing based perspective on oscillatory subsequent memory effects.

    PubMed

    Hanslmayr, Simon; Staudigl, Tobias

    2014-01-15

    Brain oscillations are increasingly recognized by memory researchers as a useful tool to unravel the neural mechanisms underlying the formation of a memory trace. However, the increasing numbers of published studies paint a rather complex picture of the relation between brain oscillations and memory formation. Concerning oscillatory amplitude, for instance, increases as well as decreases in various frequency bands (theta, alpha, beta and gamma) were associated with memory formation. These results cast doubt on frameworks putting forward the idea of an oscillatory signature that is uniquely related to memory formation. In an attempt to clarify this issue we here provide an alternative perspective, derived from classic cognitive frameworks/principles of memory. On the basis of Craik's levels of processing framework and Tulving's encoding specificity principle we hypothesize that brain oscillations during encoding might primarily reflect the perceptual and cognitive processes engaged by the encoding task. These processes may then lead to later successful retrieval depending on their overlap with the processes engaged by the memory test. As a consequence, brain oscillatory correlates of memory formation could vary dramatically depending on how the memory is encoded, and on how it is being tested later. Focusing on oscillatory amplitude changes and on theta-to-gamma cross-frequency coupling, we here review recent evidence showing how brain oscillatory subsequent memory effects can be modulated, and sometimes even be reversed, by varying encoding tasks, and the contextual overlap between encoding and retrieval.

  13. Oscillatory correlates of moral decision-making: Effect of personality.

    PubMed

    Knyazev, Gennady G; Savostyanov, Alexander N; Bocharov, Andrey V; Dorosheva, Elena A; Tamozhnikov, Sergey S; Saprigyn, Alexander E

    2016-01-01

    The role of emotion in moral decision-making is still a matter of debate. Greene, Sommerville, Nystrom, Darley, and Cohen (2001) argue that 'personal' moral judgments are driven by emotional responses, while 'impersonal' judgments are largely driven by cognitive processes. In this study, oscillatory correlates of decision-making were compared in moral personal, moral impersonal, and nonmoral conditions, as well as in trials associated with utilitarian (i.e., favoring the 'greater good' over individual rights) and non-utilitarian choices. Event-related synchronization in delta and theta bands was greater in the right temporal lobe in personal than in both nonmoral and impersonal moral condition. Graph-theoretical analysis of connectivity patterns showed the prominent role of the orbitofrontal and cingulate cortices in personal moral decision-making, implying greater emotional and self-processing. Higher conscientiousness and intellect and lower behavioral activation were associated with greater difference in oscillatory responses between utilitarian and non-utilitarian choices in personal than in impersonal condition, indicating that sensitivity to moral issues and the ability to grasp the nuances of moral situation are essential for understanding the implications of utilitarian choices in personal and impersonal conditions.

  14. Long-term changes in the fine-scale population structure of coho salmon populations (Oncorhynchus kisutch) subject to extensive supportive breeding.

    PubMed

    Eldridge, W H; Myers, J M; Naish, K A

    2009-10-01

    The long-term viability of a metapopulation depends partly on the gene flow among sub-populations. Management approaches such as translocations and supportive breeding between closely related populations may affect gene flow and overall structure, and therefore viability. Here, we examined temporal changes in the fine-scale population structure of coho salmon (Oncorhynchus kisutch) by comparing archived (1938) and modern (2001-2005) populations in six rivers within a single conservation unit (Puget Sound, Washington) sampled before and after an extended period of between-river transfers and releases of millions of cultured salmon. Genotype frequencies at eight microsatellite loci showed that current populations descended from historical Puget Sound populations, but populations in different rivers that exchanged fish for hatchery propagation share more of their ancestry recently than they did historically. Historically, populations in different rivers were isolated by geographic distance, but that relationship is no longer significant. Allelic richness among all populations declined significantly, suggesting that genetic drift has increased because of a population bottleneck. Populations in different rivers and within the same river have become more diverged, providing further evidence for a widespread bottleneck. Previously, we observed that genetic distance significantly decreased with the number of fish exchanged; however, some populations apparently resisted introgression. Altered gene flow and lost diversity may affect the complexity, and therefore resiliency of sub-populations within a conservation unit. Plans for artificial culture need to maintain existing genetic diversity and avoid disrupting the fine-scale structure by using local populations for parents whenever possible.

  15. Farms, pastures and woodlands: the fine-scale distribution of Palearctic Culicoides spp. biting midges along an agro-ecological gradient.

    PubMed

    Rigot, T; Drubbel, M Vercauteren; Delécolle, J-C; Gilbert, M

    2013-03-01

    The spatial epidemiology of Bluetongue virus (BTV) at the landscape level relates to the fine-scale distribution and dispersal capacities of its vectors, midges belonging to the genus Culicoides Latreille (Diptera: Ceratopogonidae). Although many previous researches have carried out Culicoides sampling on farms, little is known of the fine-scale distribution of Culicoides in the landscape immediately surrounding farms. The aim of this study was to gain a better understanding of Culicoides populations at increasing distances from typical dairy farms in north-west Europe, through the use of eight Onderstepoort-type black-light traps positioned along linear transects departing from farms, going through pastures and entering woodlands. A total of 16 902 Culicoides were collected in autumn 2008 and spring 2009. The majority were females, of which more than 97% were recognized as potential vectors. In pastures, we found decreasing numbers of female Culicoides as a function of the distance to the farm. This pattern was modelled by leptokurtic models, with parameters depending on season and species. By contrast, the low number of male Culicoides caught were homogeneously distributed along the transects. When transects entered woodlands, we found a higher abundance of Culicoides than expected considering the distance of the sampling sites to the farm, although this varied according to species.

  16. Fine-scale velocity structure of upper oceanic crust from full waveform inversion of downward continued seismic reflection data at the Lucky Strike Volcano, Mid-Atlantic Ridge

    NASA Astrophysics Data System (ADS)

    Arnulf, A. F.; Harding, A. J.; Singh, S. C.; Kent, G. M.; Crawford, W.

    2012-04-01

    We present a fine-scale 2D velocity structure beneath the Lucky Strike Volcano on the Mid-Atlantic Ridge (MAR) using an elastic full waveform inversion (FWI) method. The FWI is a data driven procedure that allows simultaneous exploitation of both reflections and refractions energy in multi-channel seismic data to create a single self-consistent, high-resolution velocity image of the upper crust that can be used for geologic interpretation. The long-wavelength background P-wave velocity model required by the local optimization approach was created using a combination of downward continuation and 3D first-arrival travel-time tomography. The elastic waveform inversion was applied to carefully windowed downward continued data, where wide-angle reflections and refractions arrive in front of the water-wave and are thus isolated from the high-amplitude seafloor scattering energy that is particularly acute in areas of rough igneous seafloor. Waveform inversion reduces the misfit of the initial model by 76% after 19 iterations and strongly reduced the size of the residuals relative to the signal size. The final model shows fine scale structure beneath the northern part of the Lucky Strike volcano on a resolution of tens of meters. Evidence for successive lava sequences testifies to the constructional origin of the upper section of layer 2A. Normal faults are revealed within the shallow crust and are strongly correlated with seafloor observations.

  17. Analysis of spatial genetic structure in an expanding Pinus halepensis population reveals development of fine-scale genetic clustering over time.

    PubMed

    Troupin, D; Nathan, R; Vendramin, G G

    2006-10-01

    We analysed the change of spatial genetic structure (SGS) of reproductive individuals over time in an expanding Pinus halepensis population. To our knowledge, this is the first empirical study to analyse the temporal component of SGS by following the dynamics of successive cohorts of the same population over time, rather than analysing different age cohorts at a single time. SGS is influenced by various factors including restricted gene dispersal, microenvironmental selection, mating patterns and the spatial pattern of reproductive individuals. Several factors that affect SGS are expected to vary over time and as adult density increases. Using air photo analysis, tree-ring dating and molecular marker analysis we reconstructed the spread of reproductive individuals over 30 years beginning from five initial individuals. In the early stages, genotypes were distributed randomly in space. Over time and with increasing density, fine-scale (< 20 m) SGS developed and the magnitude of genetic clustering increased. The SGS was strongly affected by the initial spatial distribution and genetic variation of the founding individuals. The development of SGS may be explained by fine-scale environmental heterogeneity and possibly microenvironmental selection. Inbreeding and variation in reproductive success may have enhanced SGS magnitude over time.

  18. A Face in the Crowd: A Non-Invasive and Cost Effective Photo-Identification Methodology to Understand the Fine Scale Movement of Eastern Water Dragons

    PubMed Central

    Gardiner, Riana Zanarivero; Doran, Erik; Strickland, Kasha; Carpenter-Bundhoo, Luke; Frère, Celine

    2014-01-01

    Ectothermic vertebrates face many challenges of thermoregulation. Many species rely on behavioral thermoregulation and move within their landscape to maintain homeostasis. Understanding the fine-scale nature of this regulation through tracking techniques can provide a better understanding of the relationships between such species and their dynamic environments. The use of animal tracking and telemetry technology has allowed the extensive collection of such data which has enabled us to better understand the ways animals move within their landscape. However, such technologies do not come without certain costs: they are generally invasive, relatively expensive, can be too heavy for small sized animals and unreliable in certain habitats. This study provides a cost-effective and non-invasive method through photo-identification, to determine fine scale movements of individuals. With our methodology, we have been able to find that male eastern water dragons (Intellagama leuseurii) have home ranges one and a half times larger than those of females. Furthermore, we found intraspecific differences in the size of home ranges depending on the time of the day. Lastly, we found that location mostly influenced females’ home ranges, but not males and discuss why this may be so. Overall, we provide valuable information regarding the ecology of the eastern water dragon, but most importantly demonstrate that non-invasive photo-identification can be successfully applied to the study of reptiles. PMID:24835073

  19. A face in the crowd: a non-invasive and cost effective photo-identification methodology to understand the fine scale movement of eastern water dragons.

    PubMed

    Gardiner, Riana Zanarivero; Doran, Erik; Strickland, Kasha; Carpenter-Bundhoo, Luke; Frère, Celine

    2014-01-01

    Ectothermic vertebrates face many challenges of thermoregulation. Many species rely on behavioral thermoregulation and move within their landscape to maintain homeostasis. Understanding the fine-scale nature of this regulation through tracking techniques can provide a better understanding of the relationships between such species and their dynamic environments. The use of animal tracking and telemetry technology has allowed the extensive collection of such data which has enabled us to better understand the ways animals move within their landscape. However, such technologies do not come without certain costs: they are generally invasive, relatively expensive, can be too heavy for small sized animals and unreliable in certain habitats. This study provides a cost-effective and non-invasive method through photo-identification, to determine fine scale movements of individuals. With our methodology, we have been able to find that male eastern water dragons (Intellagama leuseurii) have home ranges one and a half times larger than those of females. Furthermore, we found intraspecific differences in the size of home ranges depending on the time of the day. Lastly, we found that location mostly influenced females' home ranges, but not males and discuss why this may be so. Overall, we provide valuable information regarding the ecology of the eastern water dragon, but most importantly demonstrate that non-invasive photo-identification can be successfully applied to the study of reptiles.

  20. Brain oscillatory signatures of motor tasks.

    PubMed

    Ramos-Murguialday, Ander; Birbaumer, Niels

    2015-06-01

    Noninvasive brain-computer-interfaces (BCI) coupled with prosthetic devices were recently introduced in the rehabilitation of chronic stroke and other disorders of the motor system. These BCI systems and motor rehabilitation in general involve several motor tasks for training. This study investigates the neurophysiological bases of an EEG-oscillation-driven BCI combined with a neuroprosthetic device to define the specific oscillatory signature of the BCI task. Controlling movements of a hand robotic orthosis with motor imagery of the same movement generates sensorimotor rhythm oscillation changes and involves three elements of tasks also used in stroke motor rehabilitation: passive and active movement, motor imagery, and motor intention. We recorded EEG while nine healthy participants performed five different motor tasks consisting of closing and opening of the hand as follows: 1) motor imagery without any external feedback and without overt hand movement, 2) motor imagery that moves the orthosis proportional to the produced brain oscillation change with online proprioceptive and visual feedback of the hand moving through a neuroprosthetic device (BCI condition), 3) passive and 4) active movement of the hand with feedback (seeing and feeling the hand moving), and 5) rest. During the BCI condition, participants received contingent online feedback of the decrease of power of the sensorimotor rhythm, which induced orthosis movement and therefore proprioceptive and visual information from the moving hand. We analyzed brain activity during the five conditions using time-frequency domain bootstrap-based statistical comparisons and Morlet transforms. Activity during rest was used as a reference. Significant contralateral and ipsilateral event-related desynchronization of sensorimotor rhythm was present during all motor tasks, largest in contralateral-postcentral, medio-central, and ipsilateral-precentral areas identifying the ipsilateral precentral cortex as an integral

  1. Oscillatory athermal quasistatic deformation of a model glass

    NASA Astrophysics Data System (ADS)

    Fiocco, Davide; Foffi, Giuseppe; Sastry, Srikanth

    2013-08-01

    We report computer simulations of oscillatory athermal quasistatic shear deformation of dense amorphous samples of a three-dimensional model glass former. A dynamical transition is observed as the amplitude of the deformation is varied: For large values of the amplitude the system exhibits diffusive behavior and loss of memory of the initial conditions, whereas localization is observed for small amplitudes. Our results suggest that the same kind of transition found in driven colloidal systems is present in the case of amorphous solids (e.g., metallic glasses). The onset of the transition is shown to be related to the onset of energy dissipation. Shear banding is observed for large system sizes, without, however, affecting qualitative aspects of the transition.

  2. Spectral analysis of oscillatory neural circuits.

    PubMed

    Miller, W L; Sigvardt, K A

    1998-04-30

    Oscillatory dynamics are found at all levels of the nervous system. The goal of our current research on the control of rhythmic motor output by the lamprey spinal cord is to determine the features of neuronal coupling that lead to stable oscillatory activity and precisely-controlled intersegmental phase. Since our experimental manipulations can greatly increase the variability of the ventral root bursting pattern, it is important for us to employ a data analysis method which remains valid independent of this variability. Traditional analysis approaches which rely on identification of burst event times do not generally satisfy this requirement. In this paper, we illustrate the application of a straightforward statistically-based method for determining important parameters of oscillatory motor circuits using Fourier spectral analysis of spike trains. The frequency, phase, and their variabilities can be quantified; and the relative strength of coupling between different parts of the circuit can be tested for statistical significance. The approach we adopt is highly convenient for neuroscientists who study oscillatory systems as it operates directly on trains of action potentials stored as lists of event times (point-processes). Basic concepts and practical issues concerning use of Fourier analysis are discussed.

  3. Acoustic oscillatory pressure control for ramjet

    SciTech Connect

    Brown, R.S.; Dunlap, R.

    1988-08-02

    A method for controlling the acoustic oscillatory pressures generated by gas flow at the combustor inlet to a ramjet engine, the inlet including a sudden geometry expansion is described characterized by; restricting the inlet at the sudden expansion geometry such that the gas flow separates upstream and has a vena contracta downstream of the restricted inlet.

  4. Fine-Scale Comparison of TOMS Total Ozone Data with Model Analysis of an Intense Midwestern Cyclone

    NASA Technical Reports Server (NTRS)

    Olsen, Mark A.; Gallus, William A., Jr.; Stanford, John L.; Brown, John M.

    2000-01-01

    High-resolution (approx. 40 km) along-track total column ozone data from the Total Ozone Mapping Spectrometer (TOMS) instrument are compared with a high-resolution mesoscale numerical model analysis of an intense cyclone in the Midwestern United States. Total ozone increased by 100 DU (nearly 38%) as the TOMS instrument passed over the associated tropopause fold region. Complex structure is seen in the meteorological fields and compares well with the total ozone observations. Ozone data support the meteorological analysis showing that stratospheric descent was confined to levels above approx. 600 hPa; significant positive potential vorticity at lower levels is attributable to diabetic processes. Likewise, meteorological fields show that two pronounced ozone streamers extending north and northeastward into Canada at high levels are not bands of stratospheric air feeding into the cyclone; one is a channel of exhaust downstream from the system, and the other apparently previously connected the main cyclonic circulation to a southward intrusion of polar stratospheric air and advected eastward as the cut-off cyclone evolved. Good agreement between small-scale features in the model output and total ozone data underscores the latter's potential usefulness in diagnosing upper tropospheric/lower stratospheric dynamics and kinematics.

  5. Intra-annual response of tree growth to climate in temperate forests: larger implications of fine-scale responses

    NASA Astrophysics Data System (ADS)

    McMahon, S.; Parker, G. G.

    2013-12-01

    Tree growth is a key component in the movement of carbon through terrestrial ecosystems. Although correlating annual growth rates to temperature an precipitation averages is the most common approach to extrapolating climate sensitivities, individual trees respond to weather at a much finer temporal scale. This response, further, is sensitive to many environmental factors and that sensitivity can depend on species, individual location in the species range, or size of the individual among other factors. Using weekly and bi-weekly measurements of dendrometer bands on 100 trees in three sites in the eastern US (Massachusetts, Virginia, and Maryland) over four years, we fit functional forms to intra-annual growth and compared patterns in productivity response to daily temperature and water balance information. We also determined phenological patterns in growth initiation, cessation, and maximum rate. We found that across size classes and species, trees respond to high temperatures and minor droughts by pausing in diameter increase. Although water retention may contribute some to this pattern, large differences in end-of-year biomass gain demonstrate a clear relationship between these pauses and overall annual carbon gain. Species did show some distinct patterns in this sensitivity and the overall phenology of growth. Further, the growing season as defined by when the majority of biomass increase actually occurred was much smaller than the leaf-out season indicating that droughts and heat-waves in a key subset of the green season can have a disproportionate effect on tree carbon uptake and forest carbon balance.

  6. Fine-scale genetic analyses reveal unexpected spatial-temporal heterogeneity in two natural populations of the commercial mushroom Agaricus bisporus.

    PubMed

    Xu, Jianping; Desmerger, Christophe; Callac, Philippe

    2002-05-01

    This study examined the fine-scale genetic variation of the commercial mushroom, Agaricus bisporus, over 2 years at two sites in France. One site was a meadow fertilized with horse manure and disturbed regularly by humans; the other was a Monterey cypress forest free of human disturbance. Altogether, 50 mushrooms were collected and analysed for mitochondrial and nuclear genetic variation marked by RFLPs and multilocus enzyme electrophoretic polymorphisms. Population samples from these two sites were genetically different and both sites contained high levels of genetic diversity. No identical genotypes were found at either site between the 2 years and there was little evidence for extensive vegetative clonality for this species. Contrary to expectations, very limited evidence of pseudohomothallic reproduction was found. Results from tests of Hardy-Weinberg equilibrium and genotypic equilibrium showed that outcrossing and recombination have played significant roles in both populations. The results demonstrated spatial-temporal genetic heterogeneity of A. bisporus in natural populations.

  7. Genetic and morphometric differences demonstrate fine-scale population substructure of the yellow perch Perca flavescens: need for redefined management units

    USGS Publications Warehouse

    Kocovsky, Patrick M.; Sullivan, Timothy J.; Knight, Carey T.; Stepien, Carol A.

    2013-01-01

    Whole-body morphometrics and 15 nuclear DNA microsatellite loci were analysed for 158 Perca flavescens collected during the spawning season from four spawning locations in central Lake Erie, two along the northern shore and two along the southern shore, to evaluate fine-scale variation (spanning 17-94 km). Results showed significant morphological and genetic differences among P. flavescens from the four locations. The magnitudes of differences were unrelated to geographic distance, demonstrating spatially heterogeneous levels of genetic divergence. These results linked morphometric and genetic variation, showing a discontinuity of scale between currently defined management units and population structure of P. flavescens in Lake Erie, and support that P. flavescens might exist as one or more metapopulations. Findings demonstrate the value of using complementary techniques for evaluating population structure.

  8. Fine-scale population epigenetic structure in relation to gastrointestinal parasite load in red grouse (Lagopus lagopus scotica)

    PubMed Central

    WENZEL, MARIUS A; PIERTNEY, STUART B

    2014-01-01

    Epigenetic modification of cytosine methylation states can be elicited by environmental stresses and may be a key process affecting phenotypic plasticity and adaptation. Parasites are potent stressors with profound physiological and ecological effects on their host, but there is little understanding in how parasites may influence host methylation states. Here, we estimate epigenetic diversity and differentiation among 21 populations of red grouse (Lagopus lagopus scotica) in north-east Scotland and test for association of gastrointestinal parasite load (caecal nematode Trichostrongylus tenuis) with hepatic genome-wide and locus-specific methylation states. Following methylation-sensitive AFLP (MSAP), 129 bands, representing 73 methylation-susceptible and 56 nonmethylated epiloci, were scored across 234 individuals. The populations differed significantly in genome-wide methylation levels and were also significantly epigenetically (FSC = 0.0227; P < 0.001) and genetically (FSC = 0.0058; P < 0.001) differentiated. Parasite load was not associated with either genome-wide methylation levels or epigenetic differentiation. Instead, we found eight disproportionately differentiated epilocus-specific methylation states (FST outliers) using bayescan software and significant positive and negative association of 35 methylation states with parasite load from bespoke generalized estimating equations (GEE), simple logistic regression (sam) and Bayesian environmental analysis (bayenv2). Following Sanger sequencing, genome mapping and geneontology (go) annotation, some of these epiloci were linked to genes involved in regulation of cell cycle, signalling, metabolism, immune system and notably rRNA methylation, histone acetylation and small RNAs. These findings demonstrate an epigenetic signature of parasite load in populations of a wild bird and suggest intriguing physiological effects of parasite-associated cytosine methylation. PMID:24943398

  9. Fine-scale population epigenetic structure in relation to gastrointestinal parasite load in red grouse (Lagopus lagopus scotica).

    PubMed

    Wenzel, Marius A; Piertney, Stuart B

    2014-09-01

    Epigenetic modification of cytosine methylation states can be elicited by environmental stresses and may be a key process affecting phenotypic plasticity and adaptation. Parasites are potent stressors with profound physiological and ecological effects on their host, but there is little understanding in how parasites may influence host methylation states. Here, we estimate epigenetic diversity and differentiation among 21 populations of red grouse (Lagopus lagopus scotica) in north-east Scotland and test for association of gastrointestinal parasite load (caecal nematode Trichostrongylus tenuis) with hepatic genome-wide and locus-specific methylation states. Following methylation-sensitive AFLP (MSAP), 129 bands, representing 73 methylation-susceptible and 56 nonmethylated epiloci, were scored across 234 individuals. The populations differed significantly in genome-wide methylation levels and were also significantly epigenetically (F(SC) = 0.0227; P < 0.001) and genetically (F(SC) = 0.0058; P < 0.001) differentiated. Parasite load was not associated with either genome-wide methylation levels or epigenetic differentiation. Instead, we found eight disproportionately differentiated epilocus-specific methylation states (F(ST) outliers) using bayescan software and significant positive and negative association of 35 methylation states with parasite load from bespoke generalized estimating equations (GEE), simple logistic regression (sam) and Bayesian environmental analysis (bayenv2). Following Sanger sequencing, genome mapping and geneontology (go) annotation, some of these epiloci were linked to genes involved in regulation of cell cycle, signalling, metabolism, immune system and notably rRNA methylation, histone acetylation and small RNAs. These findings demonstrate an epigenetic signature of parasite load in populations of a wild bird and suggest intriguing physiological effects of parasite-associated cytosine methylation.

  10. A fine-scale assessment of using barriers to conserve native stream salmonids: a case study in Akokala Creek, Glacier National Park, USA

    USGS Publications Warehouse

    Muhlfeld, Clint C.; D'Angelo, Vincent S.; S. T. Kalinowski,; Landguth, Erin L.; C. C. Downs,; J. Tohtz,; Kershner, Jeffrey L.

    2012-01-01

    Biologists are often faced with the difficult decision in managing native salmonids of where and when to install barriers as a conservation action to prevent upstream invasion of nonnative fishes. However, fine-scale approaches to assess long-term persistence of populations within streams and watersheds chosen for isolation management are often lacking. We employed a spatially-explicit approach to evaluate stream habitat conditions, relative abundance, and genetic diversity of native westslope cutthroat trout (Oncorhynchus clarkii lewisi) within the Akokala Creek watershed in Glacier National Park- a population threatened by introgressive hybridization with nonnative rainbow trout (O. mykiss) from nearby sources. The systematic survey of 24 stream reaches showed broad overlap in fish population and suitable habitat characteristics among reaches and no natural barriers to fish migration were found. Analysis of population structure using 16 microsatellite loci showed modest amounts of genetic diversity among reaches, and that fish from Long Bow Creek were the only moderately distinct genetic group. We then used this information to assess the potential impacts of three barrier placement scenarios on long-term population persistence and genetic diversity. The two barrier placement scenarios in headwater areas generally failed to meet general persistence criteria for minimum population size (2,500 individuals, Ne = 500), maintenance of long-term genetic diversity (He), and no population subdivision. Conversely, placing a barrier near the stream mouth and selectively passing non-hybridized, migratory spawners entering Akokala Creek met all persistence criteria and may offer the best option to conserve native trout populations and life history diversity. Systematic, fine-scale stream habitat, fish distribution, and genetic assessments in streams chosen for barrier installation are needed in conjunction with broader scale assessments to understand the potential impacts of

  11. The impact of extensive clonal growth on fine-scale mating patterns: a full paternity analysis of a lily-of-the-valley population (Convallaria majalis)

    PubMed Central

    Vandepitte, Katrien; De Meyer, Tim; Jacquemyn, Hans; Roldán-Ruiz, Isabel; Honnay, Olivier

    2013-01-01

    Background and Aims The combination of clonality and a mating system promoting outcrossing is considered advantageous because outcrossing avoids the fitness costs of selfing within clones (geitonogamy) while clonality assures local persistence and increases floral display. The spatial spread of genetically identical plants (ramets) may, however, also decrease paternal diversity (the number of sires fertilizing a given dam) and fertility, particularly towards the centre of large clumped clones. This study aimed to quantify the impact of extensive clonal growth on fine-scale paternity patterns in a population of the allogamous Convallaria majalis. Methods A full analysis of paternity was performed by genotyping all flowering individuals and all viable seeds produced during a single season using AFLP. Mating patterns were examined and the spatial position of ramets was related to the extent of multiple paternity, fruiting success and seed production. Key Results The overall outcrossing rate was high (91 %) and pollen flow into the population was considerable (27 %). Despite extensive clonal growth, multiple paternity was relatively common (the fraction of siblings sharing the same father was 0·53 within ramets). The diversity of offspring collected from reproductive ramets surrounded by genetically identical inflorescences was as high as among offspring collected from ramets surrounded by distinct genets. There was no significant relationship between the similarity of the pollen load received by two ramets and the distance between them. Neither the distance of ramets with respect to distinct genets nor the distance to the genet centre significantly affected fruiting success or seed production. Conclusions Random mating and considerable pollen inflow most probably implied that pollen dispersal distances were sufficiently high to mitigate local mate scarcity despite extensive clonal spread. The data provide no evidence for the intrusion of clonal growth on fine-scale

  12. RAD genotyping reveals fine-scale genetic structuring and provides powerful population assignment in a widely distributed marine species, the American lobster (Homarus americanus).

    PubMed

    Benestan, Laura; Gosselin, Thierry; Perrier, Charles; Sainte-Marie, Bernard; Rochette, Rémy; Bernatchez, Louis

    2015-07-01

    Deciphering genetic structure and inferring connectivity in marine species have been challenging due to weak genetic differentiation and limited resolution offered by traditional genotypic methods. The main goal of this study was to assess how a population genomics framework could help delineate the genetic structure of the American lobster (Homarus americanus) throughout much of the species' range and increase the assignment success of individuals to their location of origin. We genotyped 10 156 filtered SNPs using RAD sequencing to delineate genetic structure and perform population assignment for 586 American lobsters collected in 17 locations distributed across a large portion of the species' natural distribution range. Our results revealed the existence of a hierarchical genetic structure, first separating lobsters from the northern and southern part of the range (FCT  = 0.0011; P-value = 0.0002) and then revealing a total of 11 genetically distinguishable populations (mean FST  = 0.00185; CI: 0.0007-0.0021, P-value < 0.0002), providing strong evidence for weak, albeit fine-scale population structuring within each region. A resampling procedure showed that assignment success was highest with a subset of 3000 SNPs having the highest FST . Applying Anderson's (Molecular Ecology Resources, 2010, 10, 701) method to avoid 'high-grading bias', 94.2% and 80.8% of individuals were correctly assigned to their region and location of origin, respectively. Lastly, we showed that assignment success was positively associated with sample size. These results demonstrate that using a large number of SNPs improves fine-scale population structure delineation and population assignment success in a context of weak genetic structure. We discuss the implications of these findings for the conservation and management of highly connected marine species, particularly regarding the geographic scale of demographic independence.

  13. Inbreeding avoidance drives consistent variation of fine-scale genetic structure caused by dispersal in the seasonal mating system of Brandt's voles.

    PubMed

    Liu, Xiao Hui; Yue, Ling Fen; Wang, Da Wei; Li, Ning; Cong, Lin

    2013-01-01

    Inbreeding depression is a major evolutionary and ecological force influencing population dynamics and the evolution of inbreeding-avoidance traits such as mating systems and dispersal. Mating systems and dispersal are fundamental determinants of population genetic structure. Resolving the relationships among genetic structure, seasonal breeding-related mating systems and dispersal will facilitate our understanding of the evolution of inbreeding avoidance. The goals of this study were as follows: (i) to determine whether females actively avoided mating with relatives in a group-living rodent species, Brandt's voles (Lasiopodomys brandtii), by combined analysis of their mating system, dispersal and genetic structure; and (ii) to analyze the relationships among the variation in fine-genetic structure, inbreeding avoidance, season-dependent mating strategies and individual dispersal. Using both individual- and population-level analyses, we found that the majority of Brandt's vole groups consisted of close relatives. However, both group-specific FISs, an inbreeding coefficient that expresses the expected percentage rate of homozygosity arising from a given breeding system, and relatedness of mates showed no sign of inbreeding. Using group pedigrees and paternity analysis, we show that the mating system of Brandt's voles consists of a type of polygyny for males and extra-group polyandry for females, which may decrease inbreeding by increasing the frequency of mating among distantly-related individuals. The consistent variation in within-group relatedness, among-group relatedness and fine-scale genetic structures was mostly due to dispersal, which primarily occurred during the breeding season. Biologically relevant variation in the fine-scale genetic structure suggests that dispersal during the mating season may be a strategy to avoid inbreeding and drive the polygynous and extra-group polyandrous mating system of this species.

  14. Understory Plant Community Composition Is Associated with Fine-Scale Above- and Below-Ground Resource Heterogeneity in Mature Lodgepole Pine (Pinus contorta) Forests

    PubMed Central

    McIntosh, Anne C. S.; Macdonald, S. Ellen; Quideau, Sylvie A.

    2016-01-01

    Understory plant communities play critical ecological roles in forest ecosystems. Both above- and below-ground ecosystem properties and processes influence these communities but relatively little is known about such effects at fine (i.e., one to several meters within-stand) scales, particularly for forests in which the canopy is dominated by a single species. An improved understanding of these effects is critical for understanding how understory biodiversity is regulated in such forests and for anticipating impacts of changing disturbance regimes. Our primary objective was to examine the patterns of fine-scale variation in understory plant communities and their relationships to above- and below-ground resource and environmental heterogeneity within mature lodgepole pine forests. We assessed composition and diversity of understory vegetation in relation to heterogeneity of both the above-ground (canopy tree density, canopy and tall shrub basal area and cover, downed wood biomass, litter cover) and below-ground (soil nutrient availability, decomposition, forest floor thickness, pH, and phospholipid fatty acids (PLFAs) and multiple carbon-source substrate-induced respiration (MSIR) of the forest floor microbial community) environment. There was notable variation in fine-scale plant community composition; cluster and indicator species analyses of the 24 most commonly occurring understory species distinguished four assemblages, one for which a pioneer forb species had the highest cover levels, and three others that were characterized by different bryophyte species having the highest cover. Constrained ordination (distance-based redundancy analysis) showed that two above-ground (mean tree diameter, litter cover) and eight below-ground (forest floor pH, plant available boron, microbial community composition and function as indicated by MSIR and PLFAs) properties were associated with variation in understory plant community composition. These results provide novel insights

  15. Fine-scale refuges can buffer demographic and genetic processes against short-term climatic variation and disturbance: a 22-year case study of an arboreal marsupial.

    PubMed

    Banks, Sam C; Lorin, Thibault; Shaw, Robyn E; McBurney, Lachlan; Blair, David; Blyton, Michaela D J; Smith, Annabel L; Pierson, Jennifer C; Lindenmayer, David B

    2015-08-01

    Ecological disturbance and climate are key drivers of temporal dynamics in the demography and genetic diversity of natural populations. Microscale refuges are known to buffer species' persistence against environmental change, but the effects of such refuges on demographic and genetic patterns in response to short-term environmental variation are poorly understood. We quantified demographic and genetic responses of mountain brushtail possums (Trichosurus cunninghami) to rainfall variability (1992-2013) and to a major wildfire. We hypothesized that there would be underlying differences in demographic and genetic processes between an unburnt mesic refuge and a topographically exposed zone that was burnt in 2009. Fire caused a 2-year decrease in survival in the burnt zone, but the population grew after the fire due to immigration, leading to increased expected heterozygosity. We documented a fire-related behavioural shift, where the rate of movement by individuals in the unburnt refuge to the burnt zone decreased after fire. Irrespective of the fire, there were long-term differences in demographic and genetic parameters between the mesic/unburnt refuge and the nonmesic/burnt zone. Survival was high and unaffected by rainfall in the refuge, but lower and rainfall-dependent in the nonmesic zone. Net movement of individuals was directional, from the mesic refuge to the nonmesic zone, suggesting fine-scale source-sink dynamics. There were higher expected heterozygosity (HE ) and temporal genetic stability in the refuge, but lower HE and marked temporal genetic structure in the exposed habitat, consistent with reduced generational overlap caused by elevated mortality and immigration. Thus, fine-scale refuges can mediate the short-term demographic and genetic effects of climate and ecological disturbance.

  16. Understory Plant Community Composition Is Associated with Fine-Scale Above- and Below-Ground Resource Heterogeneity in Mature Lodgepole Pine (Pinus contorta) Forests.

    PubMed

    McIntosh, Anne C S; Macdonald, S Ellen; Quideau, Sylvie A

    2016-01-01

    Understory plant communities play critical ecological roles in forest ecosystems. Both above- and below-ground ecosystem properties and processes influence these communities but relatively little is known about such effects at fine (i.e., one to several meters within-stand) scales, particularly for forests in which the canopy is dominated by a single species. An improved understanding of these effects is critical for understanding how understory biodiversity is regulated in such forests and for anticipating impacts of changing disturbance regimes. Our primary objective was to examine the patterns of fine-scale variation in understory plant communities and their relationships to above- and below-ground resource and environmental heterogeneity within mature lodgepole pine forests. We assessed composition and diversity of understory vegetation in relation to heterogeneity of both the above-ground (canopy tree density, canopy and tall shrub basal area and cover, downed wood biomass, litter cover) and below-ground (soil nutrient availability, decomposition, forest floor thickness, pH, and phospholipid fatty acids (PLFAs) and multiple carbon-source substrate-induced respiration (MSIR) of the forest floor microbial community) environment. There was notable variation in fine-scale plant community composition; cluster and indicator species analyses of the 24 most commonly occurring understory species distinguished four assemblages, one for which a pioneer forb species had the highest cover levels, and three others that were characterized by different bryophyte species having the highest cover. Constrained ordination (distance-based redundancy analysis) showed that two above-ground (mean tree diameter, litter cover) and eight below-ground (forest floor pH, plant available boron, microbial community composition and function as indicated by MSIR and PLFAs) properties were associated with variation in understory plant community composition. These results provide novel insights

  17. Rhythms and blues: modulation of oscillatory synchrony and the mechanism of action of antidepressant treatments

    PubMed Central

    Leuchter, Andrew F.; Hunter, Aimee M.; Krantz, David E.; Cook, Ian A.

    2015-01-01

    Treatments for major depressive disorder (MDD) act at different hierarchical levels of biological complexity, ranging from the individual synapse to the brain as a whole. Theories of antidepressant medication action traditionally have focused on the level of cell-to-cell interaction and synaptic neurotransmission. However, recent evidence suggests that modulation of synchronized electrical activity in neuronal networks is a common effect of antidepressant treatments, including not only medications, but also neuromodulatory treatments such as repetitive transcranial magnetic stimulation. Synchronization of oscillatory network activity in particular frequency bands has been proposed to underlie neurodevelopmental and learning processes, and also may be important in the mechanism of action of antidepressant treatments. Here, we review current research on the relationship between neuroplasticity and oscillatory synchrony, which suggests that oscillatory synchrony may help mediate neuroplastic changes related to neurodevelopment, learning, and memory, as well as medication and neuromodulatory treatment for MDD. We hypothesize that medication and neuromodulation treatments may have related effects on the rate and pattern of neuronal firing, and that these effects underlie antidepressant efficacy. Elucidating the mechanisms through which oscillatory synchrony may be related to neuroplasticity could lead to enhanced treatment strategies for MDD. PMID:25809789

  18. Rhythms and blues: modulation of oscillatory synchrony and the mechanism of action of antidepressant treatments.

    PubMed

    Leuchter, Andrew F; Hunter, Aimee M; Krantz, David E; Cook, Ian A

    2015-05-01

    Treatments for major depressive disorder (MDD) act at different hierarchical levels of biological complexity, ranging from the individual synapse to the brain as a whole. Theories of antidepressant medication action traditionally have focused on the level of cell-to-cell interaction and synaptic neurotransmission. However, recent evidence suggests that modulation of synchronized electrical activity in neuronal networks is a common effect of antidepressant treatments, including not only medications, but also neuromodulatory treatments such as repetitive transcranial magnetic stimulation. Synchronization of oscillatory network activity in particular frequency bands has been proposed to underlie neurodevelopmental and learning processes, and also may be important in the mechanism of action of antidepressant treatments. Here, we review current research on the relationship between neuroplasticity and oscillatory synchrony, which suggests that oscillatory synchrony may help mediate neuroplastic changes related to neurodevelopment, learning, and memory, as well as medication and neuromodulatory treatment for MDD. We hypothesize that medication and neuromodulation treatments may have related effects on the rate and pattern of neuronal firing, and that these effects underlie antidepressant efficacy. Elucidating the mechanisms through which oscillatory synchrony may be related to neuroplasticity could lead to enhanced treatment strategies for MDD.

  19. SAETTA: fine-scale observation of the total lightning activity in the framework of the CORSiCA atmospheric observatory

    NASA Astrophysics Data System (ADS)

    Coquillat, Sylvain; Defer, Eric; Lambert, Dominique; Martin, Jean-Michel; Pinty, Jean-Pierre; Pont, Véronique; Prieur, Serge

    2015-04-01

    Located in the West Mediterranean basin, Corsica is strategically positioned for atmospheric studies referred by MISTRALS/HyMeX and MISTRALS/CHARMEX programs. The implementation of the project of atmospheric observatory CORSiCA (supported by the Collectivité Territoriale de Corse via CPER/FEDER funds) was an opportunity to strengthen the potential observation of convective events causing heavy rainfall and flash floods, by acquiring a total lightning activity detection system adapted to storm tracking at a regional scale. This detection system called SAETTA (Suivi de l'Activité Electrique Tridimensionnelle Totale de l'Atmosphère) is a network of 12 LMA stations (Lightning Mapping Array). Developed by New Mexico Tech (USA), the instrument allows observing lightning flashes in 3D and real time, at high temporal and spatial resolutions. It detects the radiations emitted by cloud discharges in the 60-66 MHz band, in a radius of about 300 km from the centre of the network, in passive mode and standalone (solar panel and battery). Each LMA station samples the signal at high rate (80 microseconds), records data on internal hard disk, and transmits a decimated signal in real-time via the 3G phone network. The decimated data are received on a server that calculates the position of the detected sources by the time-of-arrival method and manages a quasi real-time display on a website. The non decimated data intended for research applications are recovered later on the field. Deployed in May and June 2014, SAETTA operated nominally from July 13 to October 20, 2014. It is to be definitively re-installed in spring 2015 after a hardware updating. The operation of SAETTA is contractually scheduled until the end of 2019, but it is planned to continue well beyond to obtain longer-term observations for addressing issues related to climatic trends. SAETTA has great scientific potential in a broad range of topics: physics of discharge; monitoring and simulation of storm systems

  20. Oscillatory flow around discs and through orifices

    NASA Astrophysics Data System (ADS)

    Debernardinis, B.; Graham, J. M. R.; Parker, K. H.

    1980-11-01

    Examples of unsteady, axisymmetric, separated flows are modeled, including unbounded oscillatory flow around a disk and bounded oscillatory flow through a sharp-edged orifice. Calculations are made, assuming that the flow is inviscid and that the shed vortex sheets can be represented by sequences of discrete vortex rings. The solid bodies, i.e., the disk or the orifice and bounding tube, are also represented by a distribution of bound discrete vortex rings whose strenghts are chosen to satisfy the Neumann or zero normal velocity boundary condition. The results of flow visualization experiments and, for the orifice, pressure drop measurements are reported. In general, the gross properties of the flows are predicted accurately.

  1. REMOTE OSCILLATORY RESPONSES TO A SOLAR FLARE

    SciTech Connect

    Andic, A.; McAteer, R. T. J.

    2013-07-20

    The processes governing energy storage and release in the Sun are both related to the solar magnetic field. We demonstrate the existence of a magnetic connection between the energy released by a flare and increased oscillatory power in the lower solar atmosphere. The oscillatory power in active regions tends to increase in response to explosive events at other locations, but not in the active region itself. We carry out timing studies and show that this effect is probably caused by a large-scale magnetic connection between the regions, instead of a globally-propagating wave. We show that oscillations tend to exist in longer-lived wave trains with short periods (P < 200 s) at the time of a flare. These wave trains may be mechanisms by which flare energy can be redistributed throughout the solar atmosphere.

  2. Oscillatory phenomena in a solar network region

    NASA Astrophysics Data System (ADS)

    Tsiropoula, Georgia; Tziotziou, Kostas; Schwartz, Pavol; Heinzel, Petr

    2009-03-01

    We examine oscillatory phenomena in a solar network region from multi-wavelength, observations obtained by the ground-based Dutch Open Telescope (DOT), and by instruments on the spacecraft Solar and Heliospheric Observatory (SoHO). The observations were obtained during a coordinated observing campaign on October 14, 2005. The temporal variations of the intensities and velocities in two distinct regions of the quiet Sun were investigated: one containing several dark mottles and the other several bright points defining the network boundaries (NB). The aim is to find similarities and/or differences in the oscillatory phenomena observed in these two regions and in different spectral lines formed from the chromosphere to the transition region, as well as propagation characteristics of waves.

  3. Large Amplitude Oscillatory Shear near Jamming

    NASA Astrophysics Data System (ADS)

    Tighe, Brian; Dagois-Bohy, Simon; Somfai, Ellak; van Hecke, Martin

    2014-11-01

    Jammed solids such as foams and emulsions can be driven with oscillatory shear at finite strain amplitude and frequency. On a macro scale, this induces nonlinearities such as strain softening and shear thinning. On the micro scale one observes the onset of irreversibility, caging, and long-time diffusion. Using simulations of soft viscous spheres, we systematically vary the distance to the jamming transition. We correlate crossovers in the microscopic and macroscopic response, and construct scaling arguments to explain their relationships.

  4. A microwave dielectric resonant oscillatory circuit

    NASA Astrophysics Data System (ADS)

    Sigov, A. S.; Shvartsburg, A. B.

    2016-07-01

    Bias currents in a thin dielectric nonconducting torus are investigated, and the resonant mode of excitation of these currents is established. The similarity of the frequency spectrum of such a dielectric element to the spectra of a classical Thomson oscillatory circuit and a metamaterial with negative permittivity is demonstrated. The resonant frequency of electromagnetic oscillations of the ring dielectric circuit and magnetic and electric fields of such a circuit under resonant excitation are determined.

  5. Phase Waves in Oscillatory Chemical Reactions.

    DTIC Science & Technology

    number of waves emitted from a center of heterogeneous catalysis , the rate of wave emission. the lifetime of each wave, the asymptotic wave pattern, the...A theory is presented for the effect of heterogeneity on an oscillatory chemically reactive system in a stable limit cycle such as in heterogeneous ... catalysis . A perturbation technique is developed free of secular behavior for the solution of the non-linear partial differential equations. The

  6. Oscillatory dynamics of investment and capacity utilization

    NASA Astrophysics Data System (ADS)

    Greenblatt, R. E.

    2017-01-01

    Capitalist economic systems display a wide variety of oscillatory phenomena whose underlying causes are often not well understood. In this paper, I consider a very simple model of the reciprocal interaction between investment, capacity utilization, and their time derivatives. The model, which gives rise periodic oscillations, predicts qualitatively the phase relations between these variables. These predictions are observed to be consistent in a statistical sense with econometric data from the US economy.

  7. [High-frequency oscillatory ventilation in neonates].

    PubMed

    2002-09-01

    High-frequency oscillatory ventilation (HFOV) may be considered as an alternative in the management of severe neonatal respiratory failure requiring mechanical ventilation. In patients with diffuse pulmonary disease, HFOV can applied as a rescue therapy with a high lung volume strategy to obtain adequate alveolar recruitment. We review the mechanisms of gas exchange, as well as the indications, monitoring and special features of the use HVOF in the neonatal period.

  8. Colloidal polycrystalline monolayers under oscillatory shear

    NASA Astrophysics Data System (ADS)

    Buttinoni, Ivo; Steinacher, Mathias; Spanke, Hendrik Th.; Pokki, Juho; Bahmann, Severin; Nelson, Bradley; Foffi, Giuseppe; Isa, Lucio

    2017-01-01

    In this paper we probe the structural response to oscillatory shear deformations of polycrystalline monolayers of soft repulsive colloids with varying area fraction over a broad range of frequencies and amplitudes. The particles are confined at a fluid interface, sheared using a magnetic microdisk, and imaged through optical microscopy. The structural and mechanical response of soft materials is highly dependent on their microstructure. If crystals are well understood and deform through the creation and mobilization of specific defects, the situation is much more complex for disordered jammed materials, where identifying structural motifs defining plastically rearranging regions remains an elusive task. Our materials fall between these two classes and allow the identification of clear pathways for structural evolution. In particular, we demonstrate that large enough strains are able to fluidize the system, identifying critical strains that fulfill a local Lindemann criterion. Conversely, smaller strains lead to localized and erratic irreversible particle rearrangements due to the motion of structural defects. In this regime, oscillatory shear promotes defect annealing and leads to the growth of large crystalline domains. Numerical simulations help identify the population of rearranging particles with those exhibiting the largest deviatoric stresses and indicate that structural evolution proceeds towards the minimization of the stress stored in the system. The particles showing high deviatoric stresses are localized around grain boundaries and defects, providing a simple criterion to spot regions likely to rearrange plastically under oscillatory shear.

  9. Modeling Stromatolite Growth Under Oscillatory Flows

    NASA Astrophysics Data System (ADS)

    Patel, H. J.; Gong, J.; Tice, M. M.

    2014-12-01

    Stromatolite growth models based on diffusion limited aggregation (DLA) has been fairly successful at producing features commonly recognized in stromatolitic structures in the rock record. These models generally require slow mixing of solutes at time scales comparable to the growth of organisms and largely ignore fluid erosions. Recent research on microbial mats suggests that fluid flow might have a dominant control on the formation, deformation and erosion of surface microbial structures, raising the possibility that different styles of fluid flow may influence the morphology of stromatolites. Many stromatolites formed in relatively high energy, shallow water environments under oscillatory currents driven by wind-induced waves. In order to investigate the potential role of oscillatory flows in shaping stromatolites, we are constructing a numerical model of stromatolite growth parameterized by flume experiments with cyanobacterial biofilms. The model explicitly incorporates reaction-diffusion processes, surface deformation and erosion, biomass growth, sedimentation and mineral precipitation. A Lattice-Boltzmann numerical scheme was applied to the reaction-diffusion equations in order to boost computational efficiency. A basic finite element method was employed to compute surface deformation and erosion. Growth of biomass, sedimentation and carbonate precipitation was based on a modified discrete cellular automata scheme. This model will be used to test an alternative hypothesis for the formation of stromatolites in higher energy, shallow and oscillatory flow environments.

  10. Bicycling and Walking are Associated with Different Cortical Oscillatory Dynamics

    PubMed Central

    Storzer, Lena; Butz, Markus; Hirschmann, Jan; Abbasi, Omid; Gratkowski, Maciej; Saupe, Dietmar; Schnitzler, Alfons; Dalal, Sarang S.

    2016-01-01

    Although bicycling and walking involve similar complex coordinated movements, surprisingly Parkinson’s patients with freezing of gait typically remain able to bicycle despite severe difficulties in walking. This observation suggests functional differences in the motor networks subserving bicycling and walking. However, a direct comparison of brain activity related to bicycling and walking has never been performed, neither in healthy participants nor in patients. Such a comparison could potentially help elucidating the cortical involvement in motor control and the mechanisms through which bicycling ability may be preserved in patients with freezing of gait. The aim of this study was to contrast the cortical oscillatory dynamics involved in bicycling and walking in healthy participants. To this end, EEG and EMG data of 14 healthy participants were analyzed, who cycled on a stationary bicycle at a slow cadence of 40 revolutions per minute (rpm) and walked at 40 strides per minute (spm), respectively. Relative to walking, bicycling was associated with a stronger power decrease in the high beta band (23–35 Hz) during movement initiation and execution, followed by a stronger beta power increase after movement termination. Walking, on the other hand, was characterized by a stronger and persisting alpha power (8–12 Hz) decrease. Both bicycling and walking exhibited movement cycle-dependent power modulation in the 24–40 Hz range that was correlated with EMG activity. This modulation was significantly stronger in walking. The present findings reveal differential cortical oscillatory dynamics in motor control for two types of complex coordinated motor behavior, i.e., bicycling and walking. Bicycling was associated with a stronger sustained cortical activation as indicated by the stronger high beta power decrease during movement execution and less cortical motor control within the movement cycle. We speculate this to be due to the more continuous nature of bicycling

  11. Dopamine depresses cholinergic oscillatory network activity in rat hippocampus.

    PubMed

    Weiss, Torsten; Veh, Rüdiger W; Heinemann, Uwe

    2003-11-01

    The dopaminergic neuronal system is implicated in cognitive processes in a variety of brain regions including the mesolimbic system. We have investigated whether dopamine also affects synchronized network activity in the hippocampus, which has been ascribed to play a pivotal role in memory formation. Gamma frequency (20-80 Hz) oscillations were induced by the cholinergic agonist carbachol. Oscillatory activity was examined in area CA3 of Wistar rat hippocampal slices, employing field potential and intracellular recordings. Application of carbachol initiated synchronized population activity in the gamma band at 40 Hz. Induced gamma activity persisted over hours and required GABAA receptors. Dopamine reversibly decreased the integrated gamma band power of the carbachol rhythm by 62%, while its frequency was not changed. By contrast, individual pyramidal cells recorded during carbachol-induced field gamma activity exhibited theta frequency (5-15 Hz) membrane potential oscillations that were not altered by dopamine. The dopamine effect on the field gamma activity was mimicked by the D1 receptor agonist SKF-383393 and partially antagonized by the D1 antagonist SCH-23390. Conversely, the D2 receptor agonist quinpirole failed to depress the oscillations, and the D2 antagonist sulpiride did not prevent the suppressive dopamine effect. The data indicate that dopamine strongly depresses cholinergic gamma oscillations in area CA3 of rat hippocampus by activation of D1-like dopamine receptors and that this effect is most likely mediated via impairment of interneurons involved in generation and maintenance of the carbachol-induced network rhythm.

  12. Oscillatory Brain Activity Reveals Linguistic Prints in the Quantity Code

    PubMed Central

    Salillas, Elena; Barraza, Paulo; Carreiras, Manuel

    2015-01-01

    Number representations change through education, although it is currently unclear whether and how language could impact the magnitude representation that we share with other species. The most prominent view is that language does not play any role in modulating the core numeric representation involved in the contrast of quantities. Nevertheless, possible cultural hints on the numerical magnitude representation are currently on discussion focus. In fact, the acquisition of number words provides linguistic input that the quantity system may not ignore. Bilingualism offers a window to the study of this question, especially in bilinguals where the two number wording systems imply also two different numerical systems, such as in Basque-Spanish bilinguals. The present study evidences linguistic prints in the core number representational system through the analysis of EEG oscillatory activity during a simple number comparison task. Gamma band synchronization appears when Basque-Spanish bilinguals compare pairs of Arabic numbers linked through the Basque base-20 wording system, but it does not if the pairs are related through the base-10 system. Crucially, this gamma activity, originated in a left fronto-parietal network, only appears in bilinguals who learned math in Basque and not in equivalent proficiency bilinguals who learned math in Spanish. Thus, this neural index reflected in gamma band synchrony appears to be triggered by early learning experience with the base-20 numerical associations in Basque number words. PMID:25875210

  13. EEG oscillatory phase-dependent markers of corticospinal excitability in the resting brain.

    PubMed

    Berger, Barbara; Minarik, Tamas; Liuzzi, Gianpiero; Hummel, Friedhelm C; Sauseng, Paul

    2014-01-01

    Functional meaning of oscillatory brain activity in various frequency bands in the human electroencephalogram (EEG) is increasingly researched. While most research focuses on event-related changes of brain activity in response to external events there is also increasing interest in internal brain states influencing information processing. Several studies suggest amplitude changes of EEG oscillatory activity selectively influencing cortical excitability, and more recently it was shown that phase of EEG activity (instantaneous phase) conveys additional meaning. Here we review this field with many conflicting findings and further investigate whether corticospinal excitability in the resting brain is dependent on a specific spontaneously occurring brain state reflected by amplitude and instantaneous phase of EEG oscillations. We applied single pulse transcranial magnetic stimulation (TMS) over the left sensorimotor cortex, while simultaneously recording ongoing oscillatory activity with EEG. Results indicate that brain oscillations reflect rapid, spontaneous fluctuations of cortical excitability. Instantaneous phase but not amplitude of oscillations at various frequency bands at stimulation site at the time of TMS-pulse is indicative for brain states associated with different levels of excitability (defined by size of the elicited motor evoked potential). These results are further evidence that ongoing brain oscillations directly influence neural excitability which puts further emphasis on their role in orchestrating neuronal firing in the brain.

  14. Strengths and weaknesses of Global Positioning System (GPS) data-loggers and semi-structured interviews for capturing fine-scale human mobility: findings from Iquitos, Peru.

    PubMed

    Paz-Soldan, Valerie A; Reiner, Robert C; Morrison, Amy C; Stoddard, Steven T; Kitron, Uriel; Scott, Thomas W; Elder, John P; Halsey, Eric S; Kochel, Tadeusz J; Astete, Helvio; Vazquez-Prokopec, Gonzalo M

    2014-06-01

    Quantifying human mobility has significant consequences for studying physical activity, exposure to pathogens, and generating more realistic infectious disease models. Location-aware technologies such as Global Positioning System (GPS)-enabled devices are used increasingly as a gold standard for mobility research. The main goal of this observational study was to compare and contrast the information obtained through GPS and semi-structured interviews (SSI) to assess issues affecting data quality and, ultimately, our ability to measure fine-scale human mobility. A total of 160 individuals, ages 7 to 74, from Iquitos, Peru, were tracked using GPS data-loggers for 14 days and later interviewed using the SSI about places they visited while tracked. A total of 2,047 and 886 places were reported in the SSI and identified by GPS, respectively. Differences in the concordance between methods occurred by location type, distance threshold (within a given radius to be considered a match) selected, GPS data collection frequency (i.e., 30, 90 or 150 seconds) and number of GPS points near the SSI place considered to define a match. Both methods had perfect concordance identifying each participant's house, followed by 80-100% concordance for identifying schools and lodgings, and 50-80% concordance for residences and commercial and religious locations. As the distance threshold selected increased, the concordance between SSI and raw GPS data increased (beyond 20 meters most locations reached their maximum concordance). Processing raw GPS data using a signal-clustering algorithm decreased overall concordance to 14.3%. The most common causes of discordance as described by a sub-sample (n=101) with whom we followed-up were GPS units being accidentally off (30%), forgetting or purposely not taking the units when leaving home (24.8%), possible barriers to the signal (4.7%) and leaving units home to recharge (4.6%). We provide a quantitative assessment of the strengths and weaknesses of

  15. Strengths and Weaknesses of Global Positioning System (GPS) Data-Loggers and Semi-structured Interviews for Capturing Fine-scale Human Mobility: Findings from Iquitos, Peru

    PubMed Central

    Paz-Soldan, Valerie A.; Reiner, Robert C.; Morrison, Amy C.; Stoddard, Steven T.; Kitron, Uriel; Scott, Thomas W.; Elder, John P.; Halsey, Eric S.; Kochel, Tadeusz J.; Astete, Helvio; Vazquez-Prokopec, Gonzalo M.

    2014-01-01

    Quantifying human mobility has significant consequences for studying physical activity, exposure to pathogens, and generating more realistic infectious disease models. Location-aware technologies such as Global Positioning System (GPS)-enabled devices are used increasingly as a gold standard for mobility research. The main goal of this observational study was to compare and contrast the information obtained through GPS and semi-structured interviews (SSI) to assess issues affecting data quality and, ultimately, our ability to measure fine-scale human mobility. A total of 160 individuals, ages 7 to 74, from Iquitos, Peru, were tracked using GPS data-loggers for 14 days and later interviewed using the SSI about places they visited while tracked. A total of 2,047 and 886 places were reported in the SSI and identified by GPS, respectively. Differences in the concordance between methods occurred by location type, distance threshold (within a given radius to be considered a match) selected, GPS data collection frequency (i.e., 30, 90 or 150 seconds) and number of GPS points near the SSI place considered to define a match. Both methods had perfect concordance identifying each participant's house, followed by 80–100% concordance for identifying schools and lodgings, and 50–80% concordance for residences and commercial and religious locations. As the distance threshold selected increased, the concordance between SSI and raw GPS data increased (beyond 20 meters most locations reached their maximum concordance). Processing raw GPS data using a signal-clustering algorithm decreased overall concordance to 14.3%. The most common causes of discordance as described by a sub-sample (n = 101) with whom we followed-up were GPS units being accidentally off (30%), forgetting or purposely not taking the units when leaving home (24.8%), possible barriers to the signal (4.7%) and leaving units home to recharge (4.6%). We provide a quantitative assessment of the strengths and

  16. Oscillatory Extinction Of Spherical Diffusion Flames

    NASA Technical Reports Server (NTRS)

    Law, C. K.; Yoo, S. W.; Christianson, E. W.

    2003-01-01

    Since extinction has been observed in an oscillatory manner in Le greater than 1 premixed flames, it is not unreasonable to expect that extinction could occur in an unsteady manner for diffusion flames. Indeed, near-limit oscillations have been observed experimentally under microgravity conditions for both candle flames and droplet flames. Furthermore, the analysis of Cheatham and Matalon on the unsteady behavior of diffusion flames with heat loss, identified an oscillatory regime which could be triggered by either a sufficiently large Lewis number (even without heat loss) or an appreciable heat loss (even for Le=1). In light of these recent understanding, the present investigation aims to provide a well-controlled experiment that can unambiguously demonstrate the oscillation of diffusion flames near both the transport- and radiation-induced limits. That is, since candle and jet flames are stabilized through flame segments that are fundamentally premixed in nature, and since premixed flames are prone to oscillate, there is the possibility that the observed oscillation of these bulk diffusion flames could be triggered and sustained by the oscillation of the premixed flame segments. Concerning the observed oscillatory droplet extinction, it is well-known that gas-phase oscillation in heterogeneous burning can be induced by and is thereby coupled with condensed-phase unsteadiness. Consequently, a convincing experiment on diffusion flame oscillation must exclude any ingredients of premixed flames and other sources that may either oscillate themselves or promote the oscillation of the diffusion flame. The present experiment on burner-generated spherical flames with a constant reactant supply endeavored to accomplish this goal. The results are further compared with those from computational simulation for further understanding and quantification of the flame dynamics and extinction.

  17. Fine-scale movements of rural free-ranging dogs in conservation areas in the temperate rainforest of the coastal range of southern Chile

    USGS Publications Warehouse

    Sepulveda, Maximiliano; Pelican, Katherine; Cross, Paul C.; Eguren, Antonieta; Singer, Randall S.

    2015-01-01

    Domestic dogs can play a variety of important roles for farmers. However, when in proximity to conservation areas, the presence of rural free-ranging dogs can be problematic due to the potential for predation of, competition with, or transmission of infectious disease to local threatened fauna. We used a frequent location radio tracking technology to study rural free-ranging dog movements and habitat use into sensitive conservation habitats. To achieve a better understanding of foray behaviors in dogs we monitored dogs (n = 14) in rural households located in an isolated area between the Valdivian Coastal Reserve and the Alerce Costero National Park in southern Chile. Dogs were mostly located near households (<200 m) but exhibited a diurnal pattern of directed excursions (forays) away from their home locations. Dogs spent, on average, 5.3% of their time in forays with average per dog foray distances from the house ranging 0.5–1.9 km (maximum distance detected 4.3 km). Foraying behavior was positively associated with pasture habitat compared to forest habitat including protected lands. Foraying dogs rarely used forest habitat and, when entered, trails and/or roads were selected for movement. Our study provides important information about how dogs interact in a fine-scale with wildlife habitat, and, in particular, protected lands, providing insight into how dog behavior might drive wildlife interactions, and, in turn, how an understanding of dog behavior can be used to manage these interactions.

  18. Fine scale daily movements and habitat use of East Pacific green turtles at a shallow coastal lagoon in Baja California Sur, Mexico

    USGS Publications Warehouse

    Senko, Jesse; Koch, Volker; Megill, William M.; Carthy, Raymond R.; Templeton, R.obert P.; Nichols, Wallace J.

    2010-01-01

    Green turtles spend most of their lives in coastal foraging areas where they face multiple anthropogenic impacts. Therefore, understanding their spatial use in this environment is a priority for conservation efforts. We studied the fine scale daily movements and habitat use of East Pacific green turtles (Chelonia mydas) at Laguna San Ignacio, a shallow coastal lagoon in Baja California Sur, Mexico where sea turtles are subject to high levels of gillnet bycatch and directed hunting. Six turtles ranging from 44.6 to 83.5 cm in straight carapace length were tracked for short deployments (1 to 6 d) with GPS-VHF telemetry. Turtles were active throughout diurnal, nocturnal, and crepuscular periods. Although they moved greater total distances during daytime, their speed of travel and net displacement remained consistent throughout 24-h periods. A positive selection for areas of seagrass and moderate water depth (5 to 10 m) was determined using Ivlev's electivity index, with neutral selection for shallow water (< 5 m) and avoidance of deep water (> 10 m). Turtles exhibited two distinct behavioral movement patterns: circular movements with high fidelity to the capture–release location and meandering movements with low fidelity to the capture–release location. Our results indicate that green turtles were active throughout the diel cycle while traveling large distances and traversing multiple habitats over short temporal scales.

  19. Direct genetic evidence for reproductive philopatry and associated fine-scale migrations in female blacktip reef sharks (Carcharhinus melanopterus) in French Polynesia.

    PubMed

    Mourier, Johann; Planes, Serge

    2013-01-01

    Conservation of top predators has been emphasized as essential in an ecosystem due to their role in trophic chain regulation. Optimizing conservation strategies for these endangered marine top predators requires direct estimates of breeding patterns and connectivity as these are essential to understanding the population dynamics. There have been some attempts to investigate breeding patterns of reef sharks from litter reconstruction using molecular analyses. However, direct fine-scale migrations of female sharks for parturition as well as connectivity at a medium scale like between islands remain mostly unknown. We used microsatellite DNA markers and a likelihood-based parentage analysis to determine breeding patterns of female blacktip reef sharks in Moorea (Society Islands, French Polynesia). Most females gave birth at their home island but some migrated to specific nursery areas outside the area they are attached to, sometimes going to another island 50 km away across deep ocean. Our analysis also revealed that females migrated to the same nursery for every birthing event. Many offspring showed a high level of inbreeding indicating an overall reduced population size, restricted movements and dispersal, or specific mating behaviour. Females represent the vectors that transport the genes at nursery grounds, and their fidelity should thus define reproductive units. As females seem to be philopatric, males could be the ones dispersing genes between populations. These results highlight the need to conserve coastal zones where female reef sharks seem to exhibit philopatry during the breeding season.

  20. Host islands within the California Northern Channel Islands create fine-scale genetic structure in two sympatric species of the symbiotic ectomycorrhizal fungus Rhizopogon.

    PubMed

    Grubisha, Lisa C; Bergemann, Sarah E; Bruns, Thomas D

    2007-05-01

    We have examined fine-scale genetic structure of the symbiotic ectomycorrhizal fungi Rhizopogon occidentalis and R. vulgaris on two of the California Channel Islands using five and six microsatellite loci, respectively. Both Rhizopogon species are sympatric on Santa Cruz and Santa Rosa Islands and are ectomycorrhizal with bishop pine (Pinus muricata) on both islands or Santa Rosa Island Torrey pine (P. torreyana ssp. insularis) on Santa Rosa. The combination of disjunct pine host distributions and geographic barriers within and among the islands have created highly structured Rhizopogon populations over very short distances (8.5 km on Santa Cruz Island; F(ST) = 0.258, F(ST) = 0.056, R. occidentalis and R. vulgaris, respectively). Both species show similar patterns of genetic differentiation as a result of limited dispersal between host populations as revealed by a significant isolation by distance relationship (r = 0.69, P < 0.04; r = 0.93, P < 0.001, R. occidentalis and R. vulgaris, respectively) and Bayesian clustering analyses, and is most likely a function of the small foraging range of the few mammals that disperse Rhizopogon on these islands and the enormous spore bank characteristic of Rhizopogon species.

  1. Fine-scale habitat use by orang-utans in a disturbed peat swamp forest, central Kalimantan, and implications for conservation management.

    PubMed

    Morrogh-Bernard, Helen C; Husson, Simon J; Harsanto, Fransiskus A; Chivers, David J

    2014-01-01

    This study was conducted to see how orang-utans (Pongo pygmaeus wurmbii) were coping with fine-scale habitat disturbance in a selectively logged peat swamp forest in Central Kalimantan, Borneo. Seven habitat classes were defined, and orang-utans were found to use all of these, but were selective in their preference for certain classes over others. Overall, the tall forest classes (≥20 m) were preferred. They were preferred for feeding, irrespective of canopy connectivity, whereas classes with a connected canopy (canopy cover ≥75%), irrespective of canopy height, were preferred for resting and nesting, suggesting that tall trees are preferred for feeding and connected canopy for security and protection. The smaller forest classes (≤10 m high) were least preferred and were used mainly for travelling from patch to patch. Thus, selective logging is demonstrated here to be compatible with orang-utan survival as long as large food trees and patches of primary forest remain. Logged forest, therefore, should not automatically be designated as 'degraded'. These findings have important implications for forest management, forest classification and the designation of protected areas for orang-utan conservation.

  2. Modulation of habitat-based conservation plans by fishery opportunity costs: a New Caledonia case study using fine-scale catch data.

    PubMed

    Deas, Marilyn; Andréfouët, Serge; Léopold, Marc; Guillemot, Nicolas

    2014-01-01

    Numerous threats impact coral reefs and conservation actions are urgently needed. Fast production of marine habitat maps promotes the use of habitat-only conservation plans, where a given percentage of the area of each habitat is set as conservation objectives. However, marine reserves can impact access to fishing grounds and generate opportunity costs for fishers that need to be minimized. In New Caledonia (Southwest Pacific), we used fine-scale fishery catch maps to define nineteen opportunity costs layers (expressed as biomass catch loss) considering i) total catches, ii) target fish families, iii) local marine tenure, and iv) gear type. The expected lower impacts on fishery catch when using the different cost constraints were ranked according to effectiveness in decreasing the costs generated by the habitat-only scenarios. The exercise was done for two habitat maps with different thematic richness. In most cases, habitat conservation objectives remained achievable, but effectiveness varied widely between scenarios and between habitat maps. The results provide practical guidelines for coral reef conservation and management. Habitat-only scenarios can be used to initiate conservation projects with stakeholders but the costs induced by such scenarios can be lowered by up to 50-60% when detailed exhaustive fishery data are used. When using partial data, the gain would be only in the 15-25% range. The best compromises are achieved when using local data.

  3. Fine-scale landscape genetics of the American badger (Taxidea taxus): disentangling landscape effects and sampling artifacts in a poorly understood species

    PubMed Central

    Kierepka, E M; Latch, E K

    2016-01-01

    Landscape genetics is a powerful tool for conservation because it identifies landscape features that are important for maintaining genetic connectivity between populations within heterogeneous landscapes. However, using landscape genetics in poorly understood species presents a number of challenges, namely, limited life history information for the focal population and spatially biased sampling. Both obstacles can reduce power in statistics, particularly in individual-based studies. In this study, we genotyped 233 American badgers in Wisconsin at 12 microsatellite loci to identify alternative statistical approaches that can be applied to poorly understood species in an individual-based framework. Badgers are protected in Wisconsin owing to an overall lack in life history information, so our study utilized partial redundancy analysis (RDA) and spatially lagged regressions to quantify how three landscape factors (Wisconsin River, Ecoregions and land cover) impacted gene flow. We also performed simulations to quantify errors created by spatially biased sampling. Statistical analyses first found that geographic distance was an important influence on gene flow, mainly driven by fine-scale positive spatial autocorrelations. After controlling for geographic distance, both RDA and regressions found that Wisconsin River and Agriculture were correlated with genetic differentiation. However, only Agriculture had an acceptable type I error rate (3–5%) to be considered biologically relevant. Collectively, this study highlights the benefits of combining robust statistics and error assessment via simulations and provides a method for hypothesis testing in individual-based landscape genetics. PMID:26243136

  4. Development of a multiplex PCR assay for fine-scale population genetic analysis of the Komodo monitor Varanus komodoensis based on 18 polymorphic microsatellite loci.

    PubMed

    Ciofi, Claudio; Tzika, Athanasia C; Natali, Chiara; Watts, Phillip C; Sulandari, Sri; Zein, Moch S A; Milinkovitch, Michel C

    2011-05-01

    Multiplex PCR assays for the coamplification of microsatellite loci allow rapid and cost-effective genetic analyses and the production of efficient screening protocols for international breeding programs. We constructed a partial genomic library enriched for di-nucleotide repeats and characterized 14 new microsatellite loci for the Komodo monitor (or Komodo dragon, Varanus komodoensis). Using these novel microsatellites and four previously described loci, we developed multiplex PCR assays that may be loaded on a genetic analyser in three separate panels. We tested the novel set of microsatellites for polymorphism using 69 individuals from three island populations and evaluated the resolving power of the entire panel of 18 loci by conducting (i) a preliminary assignment test to determine population(s) of origin and (ii) a parentage analysis for 43 captive Komodo monitors. This panel of polymorphic loci proved useful for both purposes and thus can be exploited for fine-scale population genetic analyses and as part of international captive breeding programs directed at maintaining genetically viable ex situ populations and reintroductions.

  5. Fine-scale parallel patterns in diversity of small benthic Arctic charr (Salvelinus alpinus) in relation to the ecology of lava/groundwater habitats

    PubMed Central

    Kristjánsson, Bjarni K; Skúlason, Skúli; Snorrason, Sigurður S; Noakes, David LG

    2012-01-01

    It is critical to study factors that are important for origin and maintenance of biological diversity. A comparative approach involving a large number of populations is particularly useful. We use this approach to study the relationship between ecological factors and phenotypic diversity in Icelandic Arctic charr (Salvelinus alpinus). Numerous populations of small benthic charr have evolved in lava springs in Iceland. These charr appear morphologically similar, but differ in important morphological features related to feeding. We found a clear relationship between diversity in morphology, diet, and ecological factors among populations. In particular, there were clear differences in morphology and diet between fish coming from habitats where the lava spring flowed on as a stream compared to habitats where the lava spring flowed into a pond. Our study shows that ecological factors are important for the origin and maintenance of biological diversity. The relationship between phenotype and ecological factors are observed on a fine scale, when comparing numerous populations that are phenotypically similar. This strongly suggests that for understanding, managing, and conserving biological diversity important ecological variables have to be taken into the account. PMID:22833787

  6. Global positioning system data-loggers: a tool to quantify fine-scale movement of domestic animals to evaluate potential for zoonotic transmission to an endangered wildlife population.

    PubMed

    Parsons, Michele B; Gillespie, Thomas R; Lonsdorf, Elizabeth V; Travis, Dominic; Lipende, Iddi; Gilagiza, Baraka; Kamenya, Shadrack; Pintea, Lilian; Vazquez-Prokopec, Gonzalo M

    2014-01-01

    Domesticated animals are an important source of pathogens to endangered wildlife populations, especially when anthropogenic activities increase their overlap with humans and wildlife. Recent work in Tanzania reports the introduction of Cryptosporidium into wild chimpanzee populations and the increased risk of ape mortality associated with SIVcpz-Cryptosporidium co-infection. Here we describe the application of novel GPS technology to track the mobility of domesticated animals (27 goats, 2 sheep and 8 dogs) with the goal of identifying potential routes for Cryptosporidium introduction into Gombe National Park. Only goats (5/27) and sheep (2/2) were positive for Cryptosporidium. Analysis of GPS tracks indicated that a crop field frequented by both chimpanzees and domesticated animals was a potential hotspot for Cryptosporidium transmission. This study demonstrates the applicability of GPS data-loggers in studies of fine-scale mobility of animals and suggests that domesticated animal-wildlife overlap should be considered beyond protected boundaries for long-term conservation strategies.

  7. Fine-scale spatio-temporal variation in tiger Panthera tigris diet: Effect of study duration and extent on estimates of tiger diet in Chitwan National Park, Nepal

    USGS Publications Warehouse

    Kapfer, Paul M.; Streby, Henry M.; Gurung, B.; Simcharoen, A.; McDougal, C.C.; Smith, J.L.D.

    2011-01-01

    Attempts to conserve declining tiger Panthera tigris populations and distributions have experienced limited success. The poaching of tiger prey is a key threat to tiger persistence; a clear understanding of tiger diet is a prerequisite to conserve dwindling populations. We used unpublished data on tiger diet in combination with two previously published studies to examine fine-scale spatio-temporal changes in tiger diet relative to prey abundance in Chitwan National Park, Nepal, and aggregated data from the three studies to examine the effect that study duration and the size of the study area have on estimates of tiger diet. Our results correspond with those of previous studies: in all three studies, tiger diet was dominated by members of Cervidae; small to medium-sized prey was important in one study. Tiger diet was unrelated to prey abundance, and the aggregation of studies indicates that increasing study duration and study area size both result in increased dietary diversity in terms of prey categories consumed, and increasing study duration changed which prey species contributed most to tiger diet. Based on our results, we suggest that managers focus their efforts on minimizing the poaching of all tiger prey, and that future studies of tiger diet be of long duration and large spatial extent to improve our understanding of spatio-temporal variation in estimates of tiger diet. ?? 2011 Wildlife Biology, NKV.

  8. Fine-Scale Characteristics of Temperature, Wind, and Turbulence in the Lower Atmosphere (0-1,300 m) Over the South Peruvian Coast

    NASA Astrophysics Data System (ADS)

    Balsley, Ben B.; Lawrence, Dale A.; Woodman, Ronald F.; Fritts, David C.

    2013-04-01

    We report results of preliminary high-resolution in situ atmospheric measurements through the boundary layer and lower atmosphere over the southern coast of Perú. This region of the coast is of particular interest because it lies adjacent to the northern coastal edge of the sub-tropical south-eastern Pacific, a very large area of ocean having a persistent stratus deck located just below the marine boundary layer (MBL) inversion. Typically, the boundary layer in this region during winter is topped by a quasi-permanent, well-defined, and very large temperature gradient. The data presented herein examine fine-scale details of the coastal atmosphere at a point where the edge of this MBL extends over the coastline as a result of persistent onshore flow. Atmospheric data were gathered using a recently-developed in-house constructed, GPS-controlled, micro-autonomous-vehicle aircraft (the DataHawk). Measured quantities include high-resolution profiles of temperature, wind, and turbulence structure from the surface to 1,300 m.

  9. Fine-scale landscape genetics of the American badger (Taxidea taxus): disentangling landscape effects and sampling artifacts in a poorly understood species.

    PubMed

    Kierepka, E M; Latch, E K

    2016-01-01

    Landscape genetics is a powerful tool for conservation because it identifies landscape features that are important for maintaining genetic connectivity between populations within heterogeneous landscapes. However, using landscape genetics in poorly understood species presents a number of challenges, namely, limited life history information for the focal population and spatially biased sampling. Both obstacles can reduce power in statistics, particularly in individual-based studies. In this study, we genotyped 233 American badgers in Wisconsin at 12 microsatellite loci to identify alternative statistical approaches that can be applied to poorly understood species in an individual-based framework. Badgers are protected in Wisconsin owing to an overall lack in life history information, so our study utilized partial redundancy analysis (RDA) and spatially lagged regressions to quantify how three landscape factors (Wisconsin River, Ecoregions and land cover) impacted gene flow. We also performed simulations to quantify errors created by spatially biased sampling. Statistical analyses first found that geographic distance was an important influence on gene flow, mainly driven by fine-scale positive spatial autocorrelations. After controlling for geographic distance, both RDA and regressions found that Wisconsin River and Agriculture were correlated with genetic differentiation. However, only Agriculture had an acceptable type I error rate (3-5%) to be considered biologically relevant. Collectively, this study highlights the benefits of combining robust statistics and error assessment via simulations and provides a method for hypothesis testing in individual-based landscape genetics.

  10. Global Positioning System Data-Loggers: A Tool to Quantify Fine-Scale Movement of Domestic Animals to Evaluate Potential for Zoonotic Transmission to an Endangered Wildlife Population

    PubMed Central

    Parsons, Michele B.; Gillespie, Thomas R.; Lonsdorf, Elizabeth V.; Travis, Dominic; Lipende, Iddi; Gilagiza, Baraka; Kamenya, Shadrack; Pintea, Lilian; Vazquez-Prokopec, Gonzalo M.

    2014-01-01

    Domesticated animals are an important source of pathogens to endangered wildlife populations, especially when anthropogenic activities increase their overlap with humans and wildlife. Recent work in Tanzania reports the introduction of Cryptosporidium into wild chimpanzee populations and the increased risk of ape mortality associated with SIVcpz-Cryptosporidium co-infection. Here we describe the application of novel GPS technology to track the mobility of domesticated animals (27 goats, 2 sheep and 8 dogs) with the goal of identifying potential routes for Cryptosporidium introduction into Gombe National Park. Only goats (5/27) and sheep (2/2) were positive for Cryptosporidium. Analysis of GPS tracks indicated that a crop field frequented by both chimpanzees and domesticated animals was a potential hotspot for Cryptosporidium transmission. This study demonstrates the applicability of GPS data-loggers in studies of fine-scale mobility of animals and suggests that domesticated animal–wildlife overlap should be considered beyond protected boundaries for long-term conservation strategies. PMID:25365070

  11. Fine-Scale Measurements Of Turbulence In The Lower Troposphere: An Intercomparison Between A Kite- And Balloon-Borne, And A Helicopter-Borne Measurement System

    NASA Astrophysics Data System (ADS)

    Muschinski, Andreas; Frehich, Ror; Jensen, Mike; Hugo, Ron; Hoff, Axel; Eaton, Frank; Balsley, Ben

    Two state-of-the-art, high-resolution, in situ turbulence measurement systems, which can be deployed at altitudes well above the atmospheric surface layer, are compared: the Tethered Lifting System (TLS) of the Cooperative Institute for Research in Environmental Sciences (CIRES)at the University of Colorado, Boulder, Colorado, and the helicopter-borneturbulence measurement system HELIPOD of the Technical UniversityBraunschweig, Germany, and the University of Hanover, Germany. Whilethe CIRES TLS is a fixed-point platform, HELIPOD is a moving platform.On the basis of data taken with the two systems in separate field campaigns,the system capabilities are quantified and discussed. Criteria for instrumentalrequirements are presented. It is shown that both the CIRES TLS and HELIPODare well suited for measuring fine-scale turbulence that is characterized by very small temperature structure parameters 106 K2 m-2/3 and smaller) and very small energy dissipation rates (10-7 m2 s-3 and smaller). The authors are not aware of any other turbulence measurement systems that have similar capabilities and can be deployed at altitudes of up to several kilometres. The HELIPOD is ideal for high-resolution horizontal measurements while the TLS is ideal for high-resolution vertical measurements using multiple sensors attached to a suspended line.

  12. Oscillatory Instability in a Two-Fluid Benard Problem.

    DTIC Science & Technology

    1984-04-01

    1963-A ( MRC Technical Summary Report #2681 OSCILLATORY INSTABILITY IN Ar TWO-FLUID BENARD PROBLEM CV Yuriko Renardy and Daniel D. Joseph 4.o...MATHEMATICS RESEARCH CENTER OSCILLATORY INSTABILITY IN A TWO-FLUID BENARD PROBLEM Yuriko Renardy I and Daniel D. Joseph * ’ 2 Technical Summary Report #2681...C. ° * .* * .* • * . -t . . . . .. . . . " -".- ." . o ,- OSCILLATORY INSTABILITY IN A WO-FLUID BENARD PROBLEM Yuriko RenardyI and Daniel D

  13. A procedure for oscillatory parameter identification

    SciTech Connect

    Trudnowski, D.J.; Donnelly, M.K.; Hauer, J.F.

    1994-02-01

    A procedure is proposed where a power system is excited with a low-level pseduo-random probing signal and the frequency, damping, magnitude, and shape of oscillatory modes are identified using spectral density estimation and frequency-domain transfer-function identification. Attention is focussed on identifying system modes in the presence of noise. Two examples cases are studied: identification of electromechanical oscillation modes in a 16-machine power system; and turbine-generator shaft modes of a 3-machine power plant feeding a series-compensated 500-kV network.

  14. Dynamics of macroautophagy: Modeling and oscillatory behavior

    NASA Astrophysics Data System (ADS)

    Han, Kyungreem; Kwon, Hyun Woong; Kang, Hyuk; Kim, Jinwoong; Lee, Myung-Shik; Choi, M. Y.

    2012-02-01

    We propose a model for macroautophagy and study the resulting dynamics of autophagy in a system isolated from its extra-cellular environment. It is found that the intracellular concentrations of autophagosomes and autolysosomes display oscillations with their own natural frequencies. Such oscillatory behaviors, which are interrelated to the dynamics of intracellular ATP, amino acids, and proteins, are consistent with the very recent biological observations. Implications of this theoretical study of autophagy are discussed, with regard to the possibility of guiding molecular studies of autophagy.

  15. Enhancing Rotational Diffusion Using Oscillatory Shear

    NASA Astrophysics Data System (ADS)

    Leahy, Brian D.; Cheng, Xiang; Ong, Desmond C.; Liddell-Watson, Chekesha; Cohen, Itai

    2013-05-01

    Taylor dispersion—shear-induced enhancement of translational diffusion—is an important phenomenon with applications ranging from pharmacology to geology. Through experiments and simulations, we show that rotational diffusion is also enhanced for anisotropic particles in oscillatory shear. This enhancement arises from variations in the particle’s rotation (Jeffery orbit) and depends on the strain amplitude, rate, and particle aspect ratio in a manner that is distinct from the translational diffusion. This separate tunability of translational and rotational diffusion opens the door to new techniques for controlling positions and orientations of suspended anisotropic colloids.

  16. Oscillatory neuronal dynamics associated with manual acupuncture: a magnetoencephalography study using beamforming analysis

    PubMed Central

    Asghar, Aziz U. R.; Johnson, Robyn L.; Woods, William; Green, Gary G. R.; Lewith, George; MacPherson, Hugh

    2012-01-01

    Magnetoencephalography (MEG) enables non-invasive recording of neuronal activity, with reconstruction methods providing estimates of underlying brain source locations and oscillatory dynamics from externally recorded neuromagnetic fields. The aim of our study was to use MEG to determine the effect of manual acupuncture on neuronal oscillatory dynamics. A major problem in MEG investigations of manual acupuncture is the absence of onset times for each needle manipulation. Given that beamforming (spatial filtering) analysis is not dependent upon stimulus-driven responses being phase-locked to stimulus onset, we postulated that beamforming could reveal source locations and induced changes in neuronal activity during manual acupuncture. In a beamformer analysis, a two-minute period of manual acupuncture needle manipulation delivered to the ipsilateral right LI-4 (Hegu) acupoint was contrasted with a two-minute baseline period. We considered oscillatory power changes in the theta (4–8 Hz), alpha (8–13 Hz), beta (13–30 Hz), and gamma (30–100 Hz) frequency bands. We found significant decreases in beta band power in the contralateral primary somatosensory cortex and superior frontal gyrus (SFG). In the ipsilateral cerebral hemisphere, we found significant power decreases in beta and gamma frequency bands in only the SFG. No significant power modulations were found in theta and alpha bands. Our results indicate that beamforming is a useful analytical tool to reconstruct underlying neuronal activity associated with manual acupuncture. Our main finding was of beta power decreases in primary somatosensory cortex and SFG, which opens up a line of future investigation regarding whether this contributes toward an underlying mechanism of acupuncture. PMID:23248594

  17. Oscillatory neuronal dynamics associated with manual acupuncture: a magnetoencephalography study using beamforming analysis.

    PubMed

    Asghar, Aziz U R; Johnson, Robyn L; Woods, William; Green, Gary G R; Lewith, George; Macpherson, Hugh

    2012-01-01

    Magnetoencephalography (MEG) enables non-invasive recording of neuronal activity, with reconstruction methods providing estimates of underlying brain source locations and oscillatory dynamics from externally recorded neuromagnetic fields. The aim of our study was to use MEG to determine the effect of manual acupuncture on neuronal oscillatory dynamics. A major problem in MEG investigations of manual acupuncture is the absence of onset times for each needle manipulation. Given that beamforming (spatial filtering) analysis is not dependent upon stimulus-driven responses being phase-locked to stimulus onset, we postulated that beamforming could reveal source locations and induced changes in neuronal activity during manual acupuncture. In a beamformer analysis, a two-minute period of manual acupuncture needle manipulation delivered to the ipsilateral right LI-4 (Hegu) acupoint was contrasted with a two-minute baseline period. We considered oscillatory power changes in the theta (4-8 Hz), alpha (8-13 Hz), beta (13-30 Hz), and gamma (30-100 Hz) frequency bands. We found significant decreases in beta band power in the contralateral primary somatosensory cortex and superior frontal gyrus (SFG). In the ipsilateral cerebral hemisphere, we found significant power decreases in beta and gamma frequency bands in only the SFG. No significant power modulations were found in theta and alpha bands. Our results indicate that beamforming is a useful analytical tool to reconstruct underlying neuronal activity associated with manual acupuncture. Our main finding was of beta power decreases in primary somatosensory cortex and SFG, which opens up a line of future investigation regarding whether this contributes toward an underlying mechanism of acupuncture.

  18. Oscillatory spin transport in spin Hall multilayers

    NASA Astrophysics Data System (ADS)

    Barsukov, Igor; Gonçalves, A. M.; Soledade, P.; Passos, C. A. C.; Costa, M.; Souza-Neto, N. M.; Garcia, F.; Lee, H. K.; Smith, A.; Tretiakov, O.; Krivorotov, I. N.; Sampaio, L. C.

    We study multilayers of sputtered Pt/(d)Cu/Py as a function of the Cu thickness d using ferromagnetic resonance (FMR). The FMR linewidth reveals a linear dependence on the frequency with negligible inhomogeneous contribution. The Gilbert damping falls smoothly with increasing d, but presents a strong superimposed oscillation with a period of ~1.5nm. We attribute this behavior to RKKY-like spin transport in the confinement of the Cu layer. The induced perpendicular anisotropy due to the proximity effect shows a similar behavior. We evaluate the induced magnetic moment on Pt using x-ray magnetic circular dichroism and find that it decreases with increasing Cu thickness smoothly. Again, we see oscillations of the magnetic moment and show that the oscillatory spin transport affects proximity induced magnetism in Pt. We extend our study to multilayer systems with increased oxidation levels and with out-of-plane crystal texture, in order to investigate the effects of disorder and electron's k-vectors that are responsible for the oscillatory spin transport.

  19. Feedback control of subcritical oscillatory instabilities.

    PubMed

    Golovin, A A; Nepomnyashchy, A A

    2006-04-01

    Feedback control of a subcritical oscillatory instability is investigated in the framework of a globally-controlled complex Ginzburg-Landau equation that describes the nonlinear dynamics near the instability threshold. The control is based on a feedback loop between the system linear growth rate and the maximum of the amplitude of the emerging pattern. It is shown that such control can suppress the blow up and result in the formation of spatially localized pulses similar to oscillons. In the one-dimensional case, depending on the values of the linear and nonlinear dispersion coefficients, several types of the pulse dynamics are possible in which the computational domain contains: (i) a single stationary pulse; (ii) several coexisting stationary pulses; (iii) competing pulses that appear one after another at random locations so that at each moment of time there is only one pulse in the domain; (iv) spatiotemporally chaotic system of short pulses; (v) spatially-synchronized pulses. Similar dynamic behavior is found also in the two-dimensional case. The effect of the feedback delay is also studied. It is shown that the increase of the delay leads to an oscillatory instability of the pulses and the formation of pulses with oscillating amplitude.

  20. Passive swimming in viscous oscillatory flows

    NASA Astrophysics Data System (ADS)

    Jo, Ikhee; Huang, Yangyang; Zimmermann, Walter; Kanso, Eva

    2016-12-01

    Fluid-based locomotion at low Reynolds number is subject to the constraints of Purcell's scallop theorem: reciprocal shape kinematics identical under a time-reversal symmetry cannot cause locomotion. In particular, a single degree-of-freedom scallop undergoing opening and closing motions cannot swim. Most strategies for symmetry breaking and locomotion rely on direct control of the swimmer's shape kinematics. Less is known about indirect control via actuation of the fluid medium. To address how such indirect actuation strategies can lead to locomotion, we analyze a Λ -shaped model system analogous to Purcell's scallop but able to deform passively in oscillatory flows. Neutrally buoyant scallops undergo no net locomotion. We show that dense, elastic scallops can exhibit passive locomotion in zero-mean oscillatory flows. We examine the efficiency of swimming parallel to the background flow and analyze the stability of these motions. We observe transitions from stable to unstable swimming, including ordered transitions from fluttering to chaoticlike motions and tumbling. Our results demonstrate that flow oscillations can be used to passively actuate and control the motion of microswimmers, which may be relevant to applications such as surgical robots and cell sorting and manipulation in microfluidic devices.

  1. Oscillatory vortex formation behind a movable plat

    NASA Astrophysics Data System (ADS)

    Vukicevic, Marija; Pedrizzetti, Gianni

    2010-11-01

    INTRODUCTION: A wide spectra of application, from industrial to environmental and biological, involve fluid-structure interaction (FSI) at a fundamental level. We investigate a 2D FSI problem for a rigid structure hinged on a wall, freely rotating by the action of an oscillatory fluid flow. METHODS: The Navier-Stokes equations are solved simultaneously with the body dynamics. An accurate numerical solution is developed on the conformal map of the time-varying physical domain. RESULTS: The FSI is primarily influenced by the vortex formation process and by the interaction between vortices generated during the sequential flow oscillations. The emerging bodies can be arranged into a three main groups. The first, made of heavy bodies, terminates the motion during the first few oscillations with the impact of the body on the wall. On the other extreme, the third group made of relatively light bodies presents a flow-driven motion that oscillates periodically in time. In a wide intermediate range, the body oscillates in time presenting non periodic features. CONCLUSIONS: The process of oscillatory vortex formation in presence of fluid-structure interaction shows the emergence of various phenomena that were analyzed in details. In this specific application the results demonstrate that the FSI range from linear to chaotic interaction and finite-time collapse.

  2. Ripple morphology under oscillatory flow: 2. Experiments

    NASA Astrophysics Data System (ADS)

    Pedocchi, F.; GarcíA, M. H.

    2009-12-01

    Recent large-scale laboratory experiments on the formation of ripples under oscillatory flow are presented. The experiments were performed in the Large Oscillatory Water-Sediment Tunnel (LOWST) at University of Illinois at Urbana-Champaign, using 250 μm silica sand as sediment. The dimensions of the ripples formed under a wide range of flow conditions are compared with some of the existing predictors and with a new predictor presented in a companion paper. For a given near-bed water excursion the size of the ripples is observed to initially decrease with the increase of the maximum orbital velocity, as has been suggested before. However, an abrupt change of the ripple size and the transition to large round-crested ripples is observed when the maximum orbital velocity becomes larger than 0.5 m/s. Above this value the size of these round-crested ripples continuously increased with the increase of the maximum orbital velocity. Additionally, anorbital ripples were never formed despite the long water excursions used in several of our experiments, confirming that anorbital ripples are only formed in fine sands. Finally, the performance of the existing planform geometry predictors and a newly proposed predictor is evaluated using our new experimental data. The results confirm that the bed planform geometry is controlled by the wave Reynolds number and the particle size. The comparison or the new data with previous results from narrow facilities shows that the facility width can restrict the development of bed form three-dimensionality.

  3. Amyloid fibril networks nucleated under oscillatory shear

    NASA Astrophysics Data System (ADS)

    Batzli, Kiersten; Love, Brian

    2013-03-01

    The process of amyloid fibril formation is of interest due to the link between these self-aggregating proteins and the progression of neurodegenerative disease. More recently, research has been directed at the exploitation of self-assembly properties of amyloid proteins for use as templates for nanowires and fibrillar networks. Insulin is an ideal protein for these purposes due to the ease of aggregation, as well as the large aspect ratio and high chemical stability of the produced fibrils. Insulin in pH 2 solution quickly forms aggregates in the presence of 65 °C heat. We have investigated the effect of oscillatory shear on the nucleation and growth of amyloid fibrillar networks using rheology and TEM to characterize the mechanical properties and structure of the network respectively. We contrast networks nucleated under oscillatory shear with networks nucleated in static and agitated conditions, and discuss network properties in the context of use in templating nanostructures. We find that the structural characteristics of the formed networks, including the density of fibrils, are affected by shear during the nucleation phase of amyloid growth.

  4. Fine-scale vertical distribution of coastal and offshore copepods in the Golfo de Arauco, central Chile, during the upwelling season

    NASA Astrophysics Data System (ADS)

    Castro, Leonardo R.; Troncoso, Victor A.; Figueroa, Dante R.

    2007-11-01

    In order to understand the mechanism by which zooplankters from different origins co-occur during the upwelling season within Golfo de Arauco, one of the most productive areas in central Chile, we assessed short term variations in the vertical distribution of the most abundant copepod species. Fine-scale, day and night vertical zooplankton sampling was done with a pump over 12 days in summer. The water column in the gulf consisted of three layers: Equatorial Subsurface Water of low dissolved oxygen content in the deeper part of the water column, strong temperature and oxygen gradients at mid-depth (15-25 m), and a layer of warmer, more oxygenated, less saline water at the surface. Copepods within the gulf originated from offshore, from the continental shelf, and from the coastal area. Most taxa showed distinctive vertical distributions. Three copepod groups were identified by their mean weighted depths of residence. One group included shallow residents found above the thermocline/oxycline ( Acartia tonsa, Centropages brachiatus, Corycaeus sp., Paracalanus parvus, Oncaea sp.). A second group was comprised by species distributed at or below the thermocline/oxycline ( Oithona sp., Oncaea conifera, Lucicutia sp., Metridia sp., Heterorhabdus papilliger). The third group was composed of vertical migrators that crossed the thermocline/oxycline ( Calanus chilensis, Calanoides patagoniensis, Aetideus armatus, Pleuromamma piseki). In spite of their different vertical distribution ranges, the most abundant and frequent copepod species ( P. parvus, C. chilensis, C. patagoniensis, C. brachiatus) share a common capacity to withstand wide ranges of oxygen concentration and temperature. This characteristic, along with the capacity to vary their life strategies under different environmental conditions, seems to facilitate the maintenance of large numbers of copepods in coastal waters along the Humboldt Current.

  5. Nest suitability, fine-scale population structure and male-mediated dispersal of a solitary ground nesting bee in an urban landscape.

    PubMed

    López-Uribe, Margarita M; Morreale, Stephen J; Santiago, Christine K; Danforth, Bryan N

    2015-01-01

    Bees are the primary pollinators of flowering plants in almost all ecosystems. Worldwide declines in bee populations have raised awareness about the importance of their ecological role in maintaining ecosystem functioning. The naturally strong philopatric behavior that some bee species show can be detrimental to population viability through increased probability of inbreeding. Furthermore, bee populations found in human-altered landscapes, such as urban areas, can experience lower levels of gene flow and effective population sizes, increasing potential for inbreeding depression in wild bee populations. In this study, we investigated the fine-scale population structure of the solitary bee Colletes inaequalis in an urbanized landscape. First, we developed a predictive spatial model to detect suitable nesting habitat for this ground nesting bee and to inform our field search for nests. We genotyped 18 microsatellites in 548 female individuals collected from nest aggregations throughout the study area. Genetic relatedness estimates revealed that genetic similarity among individuals was slightly greater within nest aggregations than among randomly chosen individuals. However, genetic structure among nest aggregations was low (Nei's GST = 0.011). Reconstruction of parental genotypes revealed greater genetic relatedness among females than among males within nest aggregations, suggesting male-mediated dispersal as a potentially important mechanism of population connectivity and inbreeding avoidance. Size of nesting patch was positively correlated with effective population size, but not with other estimators of genetic diversity. We detected a positive trend between geographic distance and genetic differentiation between nest aggregations. Our landscape genetic models suggest that increased urbanization is likely associated with higher levels of inbreeding. Overall, these findings emphasize the importance of density and distribution of suitable nesting patches for enhancing

  6. From broadscale patterns to fine-scale processes: habitat structure influences genetic differentiation in the pitcher plant midge across multiple spatial scales.

    PubMed

    Rasic, Gordana; Keyghobadi, Nusha

    2012-01-01

    The spatial scale at which samples are collected and analysed influences the inferences that can be drawn from landscape genetic studies. We examined genetic structure and its landscape correlates in the pitcher plant midge, Metriocnemus knabi, an inhabitant of the purple pitcher plant, Sarracenia purpurea, across several spatial scales that are naturally delimited by the midge's habitat (leaf, plant, cluster of plants, bog and system of bogs). We analysed 11 microsatellite loci in 710 M. knabi larvae from two systems of bogs in Algonquin Provincial Park (Canada) and tested the hypotheses that variables related to habitat structure are associated with genetic differentiation in this midge. Up to 54% of variation in individual-based genetic distances at several scales was explained by broadscale landscape variables of bog size, pitcher plant density within bogs and connectivity of pitcher plant clusters. Our results indicate that oviposition behaviour of females at fine scales, as inferred from the spatial locations of full-sib larvae, and spatially limited gene flow at broad scales represent the important processes underlying observed genetic patterns in M. knabi. Broadscale landscape features (bog size and plant density) appear to influence oviposition behaviour of midges, which in turn influences the patterns of genetic differentiation observed at both fine and broad scales. Thus, we inferred linkages among genetic patterns, landscape patterns and ecological processes across spatial scales in M. knabi. Our results reinforce the value of exploring such links simultaneously across multiple spatial scales and landscapes when investigating genetic diversity within a species.

  7. Fine-Scale Vertical Stratification and Guild Composition of Saproxylic Beetles in Lowland and Montane Forests: Similar Patterns despite Low Faunal Overlap

    PubMed Central

    Weiss, Matthias; Procházka, Jiří; Schlaghamerský, Jiří; Cizek, Lukas

    2016-01-01

    Objective The finer scale patterns of arthropod vertical stratification in forests are rarely studied and poorly understood. Further, there are no studies investigating whether and how altitude affects arthropod vertical stratification in temperate forests. We therefore investigated the fine-scale vertical stratification of diversity and guild structure of saproxylic beetles in temperate lowland and montane forests and compared the resulting patterns between the two habitats. Methods The beetles were sampled with flight intercept traps arranged into vertical transects (sampling heights 0.4, 1.2, 7, 14, and 21 m). A triplet of such transects was installed in each of the five sites in the lowland and in the mountains; 75 traps were used in each forest type. Results 381 species were collected in the lowlands and 236 species in the mountains. Only 105 species (21%) were found at both habitats; in the montane forest as well as in the lowlands, the species richness peaked at 1.2 m, and the change in assemblage composition was most rapid near the ground. The assemblages clearly differed between the understorey (0.4 m, 1.2 m) and the canopy (7 m, 14 m, 21 m) and between the two sampling heights within the understorey, but less within the canopy. The stratification was better pronounced in the lowland, where canopy assemblages were richer than those near the forest floor (0.4 m). In the mountains the samples from 14 and 21 m were more species poor than those from the lower heights. The guild structure was similar in both habitats. Conclusions The main patterns of vertical stratification and guild composition were strikingly similar between the montane and the lowland forest despite the low overlap of their faunas. The assemblages of saproxylic beetles were most stratified near ground. The comparisons of species richness between canopy and understorey may thus give contrasting results depending on the exact sampling height in the understorey. PMID:26978783

  8. Fine scale genetic and physical mapping using interstitial deletion mutants of Lr34 /Yr18: a disease resistance locus effective against multiple pathogens in wheat.

    PubMed

    Spielmeyer, W; Singh, R P; McFadden, H; Wellings, C R; Huerta-Espino, J; Kong, X; Appels, R; Lagudah, E S

    2008-02-01

    The Lr34/Yr18 locus has contributed to durable, non-race specific resistance against leaf rust (Puccinia triticina) and stripe rust (P. striiformis f. sp. tritici) in wheat (Triticum aestivum). Lr34/Yr18 also cosegregates with resistance to powdery mildew (Pm38) and a leaf tip necrosis phenotype (Ltn1). Using a high resolution mapping family from a cross between near-isogenic lines in the "Thatcher" background we demonstrated that Lr34/Yr18 also cosegregated with stem rust resistance in the field. Lr34/Yr18 probably interacts with unlinked genes to provide enhanced stem rust resistance in "Thatcher". In view of the relatively low levels of DNA polymorphism reported in the Lr34/Yr18 region, gamma irradiation of the single chromosome substitution line, Lalbahadur(Parula7D) that carries Lr34/Yr18 was used to generate several mutant lines. Characterisation of the mutants revealed a range of highly informative genotypes, which included variable size deletions and an overlapping set of interstitial deletions. The mutants enabled a large number of wheat EST derived markers to be mapped and define a relatively small physical region on chromosome 7DS that carried Lr34/Yr18. Fine scale genetic mapping confirmed the physical mapping and identified a genetic interval of less than 0.5 cM, which contained Lr34/Yr18. Both rice and Brachypodium genome sequences provided useful information for fine mapping of ESTs in wheat. Gene order was more conserved between wheat and Brachypodium than with rice but these smaller grass genomes did not reveal sequence information that could be used to identify a candidate gene for rust resistance in wheat. We predict that Lr34/Yr18 is located within a large insertion in wheat not found at syntenic positions in Brachypodium and rice.

  9. Disappearing Arctic tundra ponds: Fine-scale analysis of surface hydrology in drained thaw lake basins over a 65 year period (1948-2013)

    NASA Astrophysics Data System (ADS)

    Andresen, Christian G.; Lougheed, Vanessa L.

    2015-03-01

    Long-term fine-scale dynamics of surface hydrology in Arctic tundra ponds (less than 1 ha) are largely unknown; however, these small water bodies may contribute substantially to carbon fluxes, energy balance, and biodiversity in the Arctic system. Change in pond area and abundance across the upper Barrow Peninsula, Alaska, was assessed by comparing historic aerial imagery (1948) and modern submeter resolution satellite imagery (2002, 2008, and 2010). This was complemented by photogrammetric analysis of low-altitude kite-borne imagery in combination with field observations (2010-2013) of pond water and thaw depth transects in seven ponds of the International Biological Program historic research site. Over 2800 ponds in 22 drained thaw lake basins (DTLB) with different geological ages were analyzed. We observed a net decrease of 30.3% in area and 17.1% in number of ponds over the 62 year period. The inclusion of field observations of pond areas in 1972 from a historic research site confirms the linear downward trend in area. Pond area and number were dependent on the age of DTLB; however, changes through time were independent of DTLB age, with potential long-term implications for the hypothesized geomorphologic landscape succession of the thaw lake cycle. These losses were coincident with increases in air temperature, active layer, and density and cover of aquatic emergent plants in ponds. Increased evaporation due to warmer and longer summers, permafrost degradation, and transpiration from encroaching aquatic emergent macrophytes are likely the factors contributing to the decline in surface area and number of ponds.

  10. Imaging the Fine-Scale Structure of the San Andreas Fault in the Northern Gabilan Range with Explosion and Earthquake Sources

    NASA Astrophysics Data System (ADS)

    Xin, H.; Thurber, C. H.; Zhang, H.; Wang, F.

    2014-12-01

    A number of geophysical studies have been carried out along the San Andreas Fault (SAF) in the Northern Gabilan Range (NGR) with the purpose of characterizing in detail the fault zone structure. Previous seismic research has revealed the complex structure of the crustal volume in the NGR region in two-dimensions (Thurber et al., 1996, 1997), and there has been some work on the three-dimensional (3D) structure at a coarser scale (Lin and Roecker, 1997). In our study we use earthquake body-wave arrival times and differential times (P and S) and explosion arrival times (only P) to image the 3D P- and S-wave velocity structure of the upper crust along the SAF in the NGR using double-difference (DD) tomography. The earthquake and explosion data types have complementary strengths - the earthquake data have good resolution at depth and resolve both Vp and Vs structure, although only where there are sufficient seismic rays between hypocenter and stations, whereas the explosions contribute very good near-surface resolution but for P waves only. The original dataset analyzed by Thurber et al. (1996, 1997) included data from 77 local earthquakes and 8 explosions. We enlarge the dataset with 114 more earthquakes that occurred in the study area, obtain improved S-wave picks using an automated picker, and include absolute and cross-correlation differential times. The inversion code we use is the algorithm tomoDD (Zhang and Thurber, 2003). We assess how the P and S velocity models and earthquake locations vary as we alter the inversion parameters and the inversion grid. The new inversion results show clearly the fine-scale structure of the SAF at depth in 3D, sharpening the image of the velocity contrast from the southwest side to the northeast side.

  11. Nest Suitability, Fine-Scale Population Structure and Male-Mediated Dispersal of a Solitary Ground Nesting Bee in an Urban Landscape

    PubMed Central

    López-Uribe, Margarita M.; Morreale, Stephen J.; Santiago, Christine K.; Danforth, Bryan N.

    2015-01-01

    Bees are the primary pollinators of flowering plants in almost all ecosystems. Worldwide declines in bee populations have raised awareness about the importance of their ecological role in maintaining ecosystem functioning. The naturally strong philopatric behavior that some bee species show can be detrimental to population viability through increased probability of inbreeding. Furthermore, bee populations found in human-altered landscapes, such as urban areas, can experience lower levels of gene flow and effective population sizes, increasing potential for inbreeding depression in wild bee populations. In this study, we investigated the fine-scale population structure of the solitary bee Colletes inaequalis in an urbanized landscape. First, we developed a predictive spatial model to detect suitable nesting habitat for this ground nesting bee and to inform our field search for nests. We genotyped 18 microsatellites in 548 female individuals collected from nest aggregations throughout the study area. Genetic relatedness estimates revealed that genetic similarity among individuals was slightly greater within nest aggregations than among randomly chosen individuals. However, genetic structure among nest aggregations was low (Nei’s GST = 0.011). Reconstruction of parental genotypes revealed greater genetic relatedness among females than among males within nest aggregations, suggesting male-mediated dispersal as a potentially important mechanism of population connectivity and inbreeding avoidance. Size of nesting patch was positively correlated with effective population size, but not with other estimators of genetic diversity. We detected a positive trend between geographic distance and genetic differentiation between nest aggregations. Our landscape genetic models suggest that increased urbanization is likely associated with higher levels of inbreeding. Overall, these findings emphasize the importance of density and distribution of suitable nesting patches for

  12. Host Identity Matters in the Amphibian-Batrachochytrium dendrobatidis System: Fine-Scale Patterns of Variation in Responses to a Multi-Host Pathogen

    PubMed Central

    Gervasi, Stephanie; Gondhalekar, Carmen; Olson, Deanna H.; Blaustein, Andrew R.

    2013-01-01

    Species composition within ecological assemblages can drive disease dynamics including pathogen invasion, spread, and persistence. In multi-host pathogen systems, interspecific variation in responses to infection creates important context dependency when predicting the outcome of disease. Here, we examine the responses of three sympatric host species to a single fungal pathogen, Batrachochytrium dendrobatidis, which is associated with worldwide amphibian population declines and extinctions. Using an experimental approach, we show that amphibian species from three different genera display significant differences in patterns of pathgen-induced mortality as well as the magnitude and temporal dynamics of infection load. We exposed amphibians to one of four inoculation dose treatments at both larval and post- metamorphic stages and quantified infection load on day 8 and day 15 post-inoculation. Of the three species examined, only one (the Pacific treefrog; Pseudacris regilla) displayed “dose-dependent” responses; survival was reduced and infection load was elevated as inoculation dose was increased. We observed a reduction in survival but no differences in infection load across pathogen treatments in Cascades frogs (Rana cascadae). Western toads (Anaxyrus boreas) displayed differences in infection load but no differences in survival across pathogen treatments. Within species, responses to the pathogen varied with life history stage, and the most heavily infected species at the larval stage was different from the most heavily infected species at the post-metamorphic stage. Temporal changes in infection load were species and life history stage-specific. We show that variation in susceptibility to this multi-host pathogen is complex when viewed at a fine-scale and may be mediated through intrinsic host traits. PMID:23382904

  13. The Challenge of Planning Conservation Strategies in Threatened Seascapes: Understanding the Role of Fine Scale Assessments of Community Response to Cumulative Human Pressures.

    PubMed

    Guarnieri, Giuseppe; Bevilacqua, Stanislao; De Leo, Francesco; Farella, Giulio; Maffia, Anna; Terlizzi, Antonio; Fraschetti, Simonetta

    2016-01-01

    Assessing the distribution and intensity of human threats to biodiversity is a prerequisite for effective spatial planning, harmonizing conservation purposes with sustainable development. In the Mediterranean Sea, the management of Marine Protected Areas (MPAs) is rarely based on explicit consideration of the distribution of multiple stressors, with direct assessment of their effects on ecosystems. This gap limits the effectiveness of protection and is conducive to conflicts among stakeholders. Here, a fine scale assessment of the potential effects of different combinations of stressors (both land- and marine-based) on vulnerable rocky habitats (i.e. lower midlittoral and shallow infralittoral) along 40 km of coast in the western Mediterranean (Ionian Sea) has been carried out. The study area is a paradigmatic example of socio-ecological interactions, where several human uses and conservation measures collide. Significant differences in the structure of assemblages according to different combinations of threats were observed, indicating distinct responses of marine habitats to different sets of human pressures. A more complex three-dimensional structure, higher taxon richness and β-diversity characterized assemblages subject to low versus high levels of human pressure, consistently across habitats. In addition, the main drivers of change were: closeness to the harbour, water quality, and the relative extension of beaches. Our findings suggest that, although efforts to assess cumulative impacts at large scale may help in individuating priority areas for conservation purposes, the fact that such evaluations are often based on expert opinions and not on actual studies limits their ability to represent real environmental conditions at local scale. Systematic evaluations of local scale effects of anthropogenic drivers of change on biological communities should complement broad scale management strategies to achieve effective sustainability of human exploitation of

  14. Fine-Scale Mapping at 9p22.2 Identifies Candidate Causal Variants That Modify Ovarian Cancer Risk in BRCA1 and BRCA2 Mutation Carriers.

    PubMed

    Vigorito, Elena; Kuchenbaecker, Karoline B; Beesley, Jonathan; Adlard, Julian; Agnarsson, Bjarni A; Andrulis, Irene L; Arun, Banu K; Barjhoux, Laure; Belotti, Muriel; Benitez, Javier; Berger, Andreas; Bojesen, Anders; Bonanni, Bernardo; Brewer, Carole; Caldes, Trinidad; Caligo, Maria A; Campbell, Ian; Chan, Salina B; Claes, Kathleen B M; Cohn, David E; Cook, Jackie; Daly, Mary B; Damiola, Francesca; Davidson, Rosemarie; Pauw, Antoine de; Delnatte, Capucine; Diez, Orland; Domchek, Susan M; Dumont, Martine; Durda, Katarzyna; Dworniczak, Bernd; Easton, Douglas F; Eccles, Diana; Edwinsdotter Ardnor, Christina; Eeles, Ros; Ejlertsen, Bent; Ellis, Steve; Evans, D Gareth; Feliubadalo, Lidia; Fostira, Florentia; Foulkes, William D; Friedman, Eitan; Frost, Debra; Gaddam, Pragna; Ganz, Patricia A; Garber, Judy; Garcia-Barberan, Vanesa; Gauthier-Villars, Marion; Gehrig, Andrea; Gerdes, Anne-Marie; Giraud, Sophie; Godwin, Andrew K; Goldgar, David E; Hake, Christopher R; Hansen, Thomas V O; Healey, Sue; Hodgson, Shirley; Hogervorst, Frans B L; Houdayer, Claude; Hulick, Peter J; Imyanitov, Evgeny N; Isaacs, Claudine; Izatt, Louise; Izquierdo, Angel; Jacobs, Lauren; Jakubowska, Anna; Janavicius, Ramunas; Jaworska-Bieniek, Katarzyna; Jensen, Uffe Birk; John, Esther M; Vijai, Joseph; Karlan, Beth Y; Kast, Karin; Investigators, KConFab; Khan, Sofia; Kwong, Ava; Laitman, Yael; Lester, Jenny; Lesueur, Fabienne; Liljegren, Annelie; Lubinski, Jan; Mai, Phuong L; Manoukian, Siranoush; Mazoyer, Sylvie; Meindl, Alfons; Mensenkamp, Arjen R; Montagna, Marco; Nathanson, Katherine L; Neuhausen, Susan L; Nevanlinna, Heli; Niederacher, Dieter; Olah, Edith; Olopade, Olufunmilayo I; Ong, Kai-Ren; Osorio, Ana; Park, Sue Kyung; Paulsson-Karlsson, Ylva; Pedersen, Inge Sokilde; Peissel, Bernard; Peterlongo, Paolo; Pfeiler, Georg; Phelan, Catherine M; Piedmonte, Marion; Poppe, Bruce; Pujana, Miquel Angel; Radice, Paolo; Rennert, Gad; Rodriguez, Gustavo C; Rookus, Matti A; Ross, Eric A; Schmutzler, Rita Katharina; Simard, Jacques; Singer, Christian F; Slavin, Thomas P; Soucy, Penny; Southey, Melissa; Steinemann, Doris; Stoppa-Lyonnet, Dominique; Sukiennicki, Grzegorz; Sutter, Christian; Szabo, Csilla I; Tea, Muy-Kheng; Teixeira, Manuel R; Teo, Soo-Hwang; Terry, Mary Beth; Thomassen, Mads; Tibiletti, Maria Grazia; Tihomirova, Laima; Tognazzo, Silvia; van Rensburg, Elizabeth J; Varesco, Liliana; Varon-Mateeva, Raymonda; Vratimos, Athanassios; Weitzel, Jeffrey N; McGuffog, Lesley; Kirk, Judy; Toland, Amanda Ewart; Hamann, Ute; Lindor, Noralane; Ramus, Susan J; Greene, Mark H; Couch, Fergus J; Offit, Kenneth; Pharoah, Paul D P; Chenevix-Trench, Georgia; Antoniou, Antonis C

    2016-01-01

    Population-based genome wide association studies have identified a locus at 9p22.2 associated with ovarian cancer risk, which also modifies ovarian cancer risk in BRCA1 and BRCA2 mutation carriers. We conducted fine-scale mapping at 9p22.2 to identify potential causal variants in BRCA1 and BRCA2 mutation carriers. Genotype data were available for 15,252 (2,462 ovarian cancer cases) BRCA1 and 8,211 (631 ovarian cancer cases) BRCA2 mutation carriers. Following genotype imputation, ovarian cancer associations were assessed for 4,873 and 5,020 SNPs in BRCA1 and BRCA 2 mutation carriers respectively, within a retrospective cohort analytical framework. In BRCA1 mutation carriers one set of eight correlated candidate causal variants for ovarian cancer risk modification was identified (top SNP rs10124837, HR: 0.73, 95%CI: 0.68 to 0.79, p-value 2× 10-16). These variants were located up to 20 kb upstream of BNC2. In BRCA2 mutation carriers one region, up to 45 kb upstream of BNC2, and containing 100 correlated SNPs was identified as candidate causal (top SNP rs62543585, HR: 0.69, 95%CI: 0.59 to 0.80, p-value 1.0 × 10-6). The candidate causal in BRCA1 mutation carriers did not include the strongest associated variant at this locus in the general population. In sum, we identified a set of candidate causal variants in a region that encompasses the BNC2 transcription start site. The ovarian cancer association at 9p22.2 may be mediated by different variants in BRCA1 mutation carriers and in the general population. Thus, potentially different mechanisms may underlie ovarian cancer risk for mutation carriers and the general population.

  15. Don't forget the porpoise: acoustic monitoring reveals fine scale temporal variation between bottlenose dolphin and harbour porpoise in Cardigan Bay SAC.

    PubMed

    Nuuttila, Hanna K; Courtene-Jones, Winnie; Baulch, Sarah; Simon, Malene; Evans, Peter G H

    2017-01-01

    Populations of bottlenose dolphin and harbour porpoise inhabit Cardigan Bay, which was designated a Special Area of Conservation (SAC), with bottlenose dolphin listed as a primary feature for its conservation status. Understanding the abundance, distribution and habitat use of species is fundamental for conservation and the implementation of management. Bottlenose dolphin and harbour porpoise usage of feeding sites within Cardigan Bay SAC was examined using passive acoustic monitoring. Acoustic detections recorded with calibrated T-PODs (acoustic data loggers) indicated harbour porpoise to be present year round and in greater relative abundance than bottlenose dolphin. Fine-scale temporal partitioning between the species occurred at three levels: (1) seasonal differences, consistent between years, with porpoise detections peaking in winter months and dolphin detections in summer months; (2) diel variation, consistent across sites, seasons and years, with porpoise detections highest at night and dolphin detections highest shortly after sunrise; and (3) tidal variation was observed with peak dolphin detections occurring during ebb at the middle of the tidal cycle and before low tide, whereas harbour porpoise detections were highest at slack water, during and after high water with a secondary peak recorded during and after low water. General Additive Models (GAMs) were applied to better understand the effects of each covariate. The reported abundance and distribution of the two species, along with the temporal variation observed, have implications for the design and management of protected areas. Currently, in the UK, no SACs have been formally designated for harbour porpoise while three exist for bottlenose dolphins. Here, we demonstrate a need for increased protection and species-specific mitigation measures for harbour porpoise.

  16. Fine-Scale Mapping of the FGFR2 Breast Cancer Risk Locus: Putative Functional Variants Differentially Bind FOXA1 and E2F1

    PubMed Central

    Meyer, Kerstin B.; O’Reilly, Martin; Michailidou, Kyriaki; Carlebur, Saskia; Edwards, Stacey L.; French, Juliet D.; Prathalingham, Radhika; Dennis, Joe; Bolla, Manjeet K.; Wang, Qin; de Santiago, Ines; Hopper, John L.; Tsimiklis, Helen; Apicella, Carmel; Southey, Melissa C.; Schmidt, Marjanka K.; Broeks, Annegien; Van ’t Veer, Laura J.; Hogervorst, Frans B.; Muir, Kenneth; Lophatananon, Artitaya; Stewart-Brown, Sarah; Siriwanarangsan, Pornthep; Fasching, Peter A.; Lux, Michael P.; Ekici, Arif B.; Beckmann, Matthias W.; Peto, Julian; dos Santos Silva, Isabel; Fletcher, Olivia; Johnson, Nichola; Sawyer, Elinor J.; Tomlinson, Ian; Kerin, Michael J.; Miller, Nicola; Marme, Federick; Schneeweiss, Andreas; Sohn, Christof; Burwinkel, Barbara; Guénel, Pascal; Truong, Thérèse; Laurent-Puig, Pierre; Menegaux, Florence; Bojesen, Stig E.; Nordestgaard, Børge G.; Nielsen, Sune F.; Flyger, Henrik; Milne, Roger L.; Zamora, M. Pilar; Arias, Jose I.; Benitez, Javier; Neuhausen, Susan; Anton-Culver, Hoda; Ziogas, Argyrios; Dur, Christina C.; Brenner, Hermann; Müller, Heiko; Arndt, Volker; Stegmaier, Christa; Meindl, Alfons; Schmutzler, Rita K.; Engel, Christoph; Ditsch, Nina; Brauch, Hiltrud; Brüning, Thomas; Ko, Yon-Dschun; Nevanlinna, Heli; Muranen, Taru A.; Aittomäki, Kristiina; Blomqvist, Carl; Matsuo, Keitaro; Ito, Hidemi; Iwata, Hiroji; Yatabe, Yasushi; Dörk, Thilo; Helbig, Sonja; Bogdanova, Natalia V.; Lindblom, Annika; Margolin, Sara; Mannermaa, Arto; Kataja, Vesa; Kosma, Veli-Matti; Hartikainen, Jaana M.; Chenevix-Trench, Georgia; Wu, Anna H.; Tseng, Chiu-chen; Van Den Berg, David; Stram, Daniel O.; Lambrechts, Diether; Thienpont, Bernard; Christiaens, Marie-Rose; Smeets, Ann; Chang-Claude, Jenny; Rudolph, Anja; Seibold, Petra; Flesch-Janys, Dieter; Radice, Paolo; Peterlongo, Paolo; Bonanni, Bernardo; Bernard, Loris; Couch, Fergus J.; Olson, Janet E.; Wang, Xianshu; Purrington, Kristen; Giles, Graham G.; Severi, Gianluca; Baglietto, Laura; McLean, Catriona; Haiman, Christopher A.; Henderson, Brian E.; Schumacher, Fredrick; Le Marchand, Loic; Simard, Jacques; Goldberg, Mark S.; Labrèche, France; Dumont, Martine; Teo, Soo-Hwang; Yip, Cheng-Har; Phuah, Sze-Yee; Kristensen, Vessela; Grenaker Alnæs, Grethe; Børresen-Dale, Anne-Lise; Zheng, Wei; Deming-Halverson, Sandra; Shrubsole, Martha; Long, Jirong; Winqvist, Robert; Pylkäs, Katri; Jukkola-Vuorinen, Arja; Kauppila, Saila; Andrulis, Irene L.; Knight, Julia A.; Glendon, Gord; Tchatchou, Sandrine; Devilee, Peter; Tollenaar, Robert A.E.M.; Seynaeve, Caroline M.; García-Closas, Montserrat; Figueroa, Jonine; Chanock, Stephen J.; Lissowska, Jolanta; Czene, Kamila; Darabi, Hartef; Eriksson, Kimael; Hooning, Maartje J.; Martens, John W.M.; van den Ouweland, Ans M.W.; van Deurzen, Carolien H.M.; Hall, Per; Li, Jingmei; Liu, Jianjun; Humphreys, Keith; Shu, Xiao-Ou; Lu, Wei; Gao, Yu-Tang; Cai, Hui; Cox, Angela; Reed, Malcolm W.R.; Blot, William; Signorello, Lisa B.; Cai, Qiuyin; Pharoah, Paul D.P.; Ghoussaini, Maya; Harrington, Patricia; Tyrer, Jonathan; Kang, Daehee; Choi, Ji-Yeob; Park, Sue K.; Noh, Dong-Young; Hartman, Mikael; Hui, Miao; Lim, Wei-Yen; Buhari, Shaik A.; Hamann, Ute; Försti, Asta; Rüdiger, Thomas; Ulmer, Hans-Ulrich; Jakubowska, Anna; Lubinski, Jan; Jaworska, Katarzyna; Durda, Katarzyna; Sangrajrang, Suleeporn; Gaborieau, Valerie; Brennan, Paul; McKay, James; Vachon, Celine; Slager, Susan; Fostira, Florentia; Pilarski, Robert; Shen, Chen-Yang; Hsiung, Chia-Ni; Wu, Pei-Ei; Hou, Ming-Feng; Swerdlow, Anthony; Ashworth, Alan; Orr, Nick; Schoemaker, Minouk J.; Ponder, Bruce A.J.; Dunning, Alison M.; Easton, Douglas F.

    2013-01-01

    The 10q26 locus in the second intron of FGFR2 is the locus most strongly associated with estrogen-receptor-positive breast cancer in genome-wide association studies. We conducted fine-scale mapping in case-control studies genotyped with a custom chip (iCOGS), comprising 41 studies (n = 89,050) of European ancestry, 9 Asian ancestry studies (n = 13,983), and 2 African ancestry studies (n = 2,028) from the Breast Cancer Association Consortium. We identified three statistically independent risk signals within the locus. Within risk signals 1 and 3, genetic analysis identified five and two variants, respectively, highly correlated with the most strongly associated SNPs. By using a combination of genetic fine mapping, data on DNase hypersensitivity, and electrophoretic mobility shift assays to study protein-DNA binding, we identified rs35054928, rs2981578, and rs45631563 as putative functional SNPs. Chromatin immunoprecipitation showed that FOXA1 preferentially bound to the risk-associated allele (C) of rs2981578 and was able to recruit ERα to this site in an allele-specific manner, whereas E2F1 preferentially bound the risk variant of rs35054928. The risk alleles were preferentially found in open chromatin and bound by Ser5 phosphorylated RNA polymerase II, suggesting that the risk alleles are associated with changes in transcription. Chromatin conformation capture demonstrated that the risk region was able to interact with the promoter of FGFR2, the likely target gene of this risk region. A role for FOXA1 in mediating breast cancer susceptibility at this locus is consistent with the finding that the FGFR2 risk locus primarily predisposes to estrogen-receptor-positive disease. PMID:24290378

  17. Fine-Scale Mapping at 9p22.2 Identifies Candidate Causal Variants That Modify Ovarian Cancer Risk in BRCA1 and BRCA2 Mutation Carriers

    PubMed Central

    Vigorito, Elena; Kuchenbaecker, Karoline B.; Beesley, Jonathan; Adlard, Julian; Agnarsson, Bjarni A.; Andrulis, Irene L.; Arun, Banu K.; Barjhoux, Laure; Belotti, Muriel; Benitez, Javier; Berger, Andreas; Bojesen, Anders; Bonanni, Bernardo; Brewer, Carole; Caldes, Trinidad; Caligo, Maria A.; Campbell, Ian; Chan, Salina B.; Claes, Kathleen B. M.; Cohn, David E.; Cook, Jackie; Daly, Mary B.; Damiola, Francesca; Davidson, Rosemarie; de Pauw, Antoine; Delnatte, Capucine; Diez, Orland; Domchek, Susan M.; Dumont, Martine; Durda, Katarzyna; Dworniczak, Bernd; Easton, Douglas F.; Eccles, Diana; Edwinsdotter Ardnor, Christina; Eeles, Ros; Ejlertsen, Bent; Ellis, Steve; Evans, D. Gareth; Feliubadalo, Lidia; Fostira, Florentia; Foulkes, William D.; Friedman, Eitan; Frost, Debra; Gaddam, Pragna; Ganz, Patricia A.; Garber, Judy; Garcia-Barberan, Vanesa; Gauthier-Villars, Marion; Gehrig, Andrea; Gerdes, Anne-Marie; Giraud, Sophie; Godwin, Andrew K.; Goldgar, David E.; Hake, Christopher R.; Hansen, Thomas V. O.; Healey, Sue; Hodgson, Shirley; Hogervorst, Frans B. L.; Houdayer, Claude; Hulick, Peter J.; Imyanitov, Evgeny N.; Isaacs, Claudine; Izatt, Louise; Izquierdo, Angel; Jacobs, Lauren; Jakubowska, Anna; Janavicius, Ramunas; Jaworska-Bieniek, Katarzyna; Jensen, Uffe Birk; John, Esther M.; Vijai, Joseph; Karlan, Beth Y.; Kast, Karin; Investigators, KConFab; Khan, Sofia; Kwong, Ava; Laitman, Yael; Lester, Jenny; Lesueur, Fabienne; Liljegren, Annelie; Lubinski, Jan; Mai, Phuong L.; Manoukian, Siranoush; Mazoyer, Sylvie; Meindl, Alfons; Mensenkamp, Arjen R.; Montagna, Marco; Nathanson, Katherine L.; Neuhausen, Susan L.; Nevanlinna, Heli; Niederacher, Dieter; Olah, Edith; Olopade, Olufunmilayo I.; Ong, Kai-ren; Osorio, Ana; Park, Sue Kyung; Paulsson-Karlsson, Ylva; Pedersen, Inge Sokilde; Peissel, Bernard; Peterlongo, Paolo; Pfeiler, Georg; Phelan, Catherine M.; Piedmonte, Marion; Poppe, Bruce; Pujana, Miquel Angel; Radice, Paolo; Rennert, Gad; Rodriguez, Gustavo C.; Rookus, Matti A.; Ross, Eric A.; Schmutzler, Rita Katharina; Simard, Jacques; Singer, Christian F.; Slavin, Thomas P.; Soucy, Penny; Southey, Melissa; Steinemann, Doris; Stoppa-Lyonnet, Dominique; Sukiennicki, Grzegorz; Sutter, Christian; Szabo, Csilla I.; Tea, Muy-Kheng; Teixeira, Manuel R.; Teo, Soo-Hwang; Terry, Mary Beth; Thomassen, Mads; Tibiletti, Maria Grazia; Tihomirova, Laima; Tognazzo, Silvia; van Rensburg, Elizabeth J.; Varesco, Liliana; Varon-Mateeva, Raymonda; Vratimos, Athanassios; Weitzel, Jeffrey N.; McGuffog, Lesley; Kirk, Judy; Toland, Amanda Ewart; Hamann, Ute; Lindor, Noralane; Ramus, Susan J.; Greene, Mark H.; Couch, Fergus J.; Offit, Kenneth; Pharoah, Paul D. P.; Chenevix-Trench, Georgia; Antoniou, Antonis C.

    2016-01-01

    Population-based genome wide association studies have identified a locus at 9p22.2 associated with ovarian cancer risk, which also modifies ovarian cancer risk in BRCA1 and BRCA2 mutation carriers. We conducted fine-scale mapping at 9p22.2 to identify potential causal variants in BRCA1 and BRCA2 mutation carriers. Genotype data were available for 15,252 (2,462 ovarian cancer cases) BRCA1 and 8,211 (631 ovarian cancer cases) BRCA2 mutation carriers. Following genotype imputation, ovarian cancer associations were assessed for 4,873 and 5,020 SNPs in BRCA1 and BRCA 2 mutation carriers respectively, within a retrospective cohort analytical framework. In BRCA1 mutation carriers one set of eight correlated candidate causal variants for ovarian cancer risk modification was identified (top SNP rs10124837, HR: 0.73, 95%CI: 0.68 to 0.79, p-value 2× 10−16). These variants were located up to 20 kb upstream of BNC2. In BRCA2 mutation carriers one region, up to 45 kb upstream of BNC2, and containing 100 correlated SNPs was identified as candidate causal (top SNP rs62543585, HR: 0.69, 95%CI: 0.59 to 0.80, p-value 1.0 × 10−6). The candidate causal in BRCA1 mutation carriers did not include the strongest associated variant at this locus in the general population. In sum, we identified a set of candidate causal variants in a region that encompasses the BNC2 transcription start site. The ovarian cancer association at 9p22.2 may be mediated by different variants in BRCA1 mutation carriers and in the general population. Thus, potentially different mechanisms may underlie ovarian cancer risk for mutation carriers and the general population. PMID:27463617

  18. The Challenge of Planning Conservation Strategies in Threatened Seascapes: Understanding the Role of Fine Scale Assessments of Community Response to Cumulative Human Pressures

    PubMed Central

    Guarnieri, Giuseppe; Bevilacqua, Stanislao; De Leo, Francesco; Farella, Giulio; Maffia, Anna; Terlizzi, Antonio; Fraschetti, Simonetta

    2016-01-01

    Assessing the distribution and intensity of human threats to biodiversity is a prerequisite for effective spatial planning, harmonizing conservation purposes with sustainable development. In the Mediterranean Sea, the management of Marine Protected Areas (MPAs) is rarely based on explicit consideration of the distribution of multiple stressors, with direct assessment of their effects on ecosystems. This gap limits the effectiveness of protection and is conducive to conflicts among stakeholders. Here, a fine scale assessment of the potential effects of different combinations of stressors (both land- and marine-based) on vulnerable rocky habitats (i.e. lower midlittoral and shallow infralittoral) along 40 km of coast in the western Mediterranean (Ionian Sea) has been carried out. The study area is a paradigmatic example of socio-ecological interactions, where several human uses and conservation measures collide. Significant differences in the structure of assemblages according to different combinations of threats were observed, indicating distinct responses of marine habitats to different sets of human pressures. A more complex three-dimensional structure, higher taxon richness and β-diversity characterized assemblages subject to low versus high levels of human pressure, consistently across habitats. In addition, the main drivers of change were: closeness to the harbour, water quality, and the relative extension of beaches. Our findings suggest that, although efforts to assess cumulative impacts at large scale may help in individuating priority areas for conservation purposes, the fact that such evaluations are often based on expert opinions and not on actual studies limits their ability to represent real environmental conditions at local scale. Systematic evaluations of local scale effects of anthropogenic drivers of change on biological communities should complement broad scale management strategies to achieve effective sustainability of human exploitation of

  19. Control of Cavity Resonance Using Steady and Oscillatory Blowing

    NASA Technical Reports Server (NTRS)

    Lamp, Alison M.; Chokani, Ndaona

    1999-01-01

    An experimental study to investigate the effect of steady and oscillatory (with zero net mass flux) blowing on cavity resonance is undertaken. The objective is to study the basic mechanisms of the control of cavity resonance. An actuator is designed and calibrated to generate either steady blowing or oscillatory blowing with A zero net mass flux. The results of the experiment show that both steady and oscillatory blowing are effective, and reduce the amplitude of the dominant resonant mode by 1OdB. The oscillatory blowing is however found to be more superior in that the same effectiveness could be accomplished with a momentum coefficient an order of magnitude smaller than for steady blowing. The experiment also confirms the results of previous computations that suggest the forcing frequency for oscillatory blowing must not be at harmonic frequencies of the cavity resonant modes.

  20. Oscillatory high hydrostatic pressure inactivation of Zygosaccharomyces bailii.

    PubMed

    Palou, E; López-Malo, A; Barbosa-Cánovas, G V; Welti-Chanes, J; Swanson, B G

    1998-09-01

    Zygosaccharomyces bailii inactivation was evaluated in oscillatory high hydrostatic pressure (HHP) treatments at sublethal pressures (207, 241, or 276 MPa) and compared with continuous HHP treatments in laboratory model systems with a water activity (aw) of 0.98 and pH 3.5. The yeast was inoculated into laboratory model systems and subjected to HHP in sterile bags. Two HHP treatments were conducted: continuous (holding times of 5, 10, 15, 20, 30, 60, or 90 min) and oscillatory (two, three, or four cycles with holding times of 5 min and two cycles with holding times of 10 min). Oscillatory pressure treatments increased the effectiveness of HHP processing. For equal holding times, Z. bailii counts decreased as the number of cycles increased. Holding times of 20 min in HHP oscillatory treatments at 276 MPa assured inactivation (< 10 CFU/ml) of Z. bailii initial inoculum. Oscillatory pressurization could be useful to decrease Z. bailii inactivation time.

  1. Shadows of music-language interaction on low frequency brain oscillatory patterns.

    PubMed

    Carrus, Elisa; Koelsch, Stefan; Bhattacharya, Joydeep

    2011-10-01

    Electrophysiological studies investigating similarities between music and language perception have relied exclusively on the signal averaging technique, which does not adequately represent oscillatory aspects of electrical brain activity that are relevant for higher cognition. The current study investigated the patterns of brain oscillations during simultaneous processing of music and language using visually presented sentences and auditorily presented chord sequences. Music-syntactically regular or irregular chord functions were presented in sync with syntactically or semantically correct or incorrect words. Irregular chord functions (presented simultaneously with a syntactically correct word) produced an early (150-250 ms) spectral power decrease over anterior frontal regions in the theta band (5-7 Hz) and a late (350-700 ms) power increase in both the delta and the theta band (2-7 Hz) over parietal regions. Syntactically incorrect words (presented simultaneously with a regular chord) elicited a similar late power increase in delta-theta band over parietal sites, but no early effect. Interestingly, the late effect was significantly diminished when the language-syntactic and music-syntactic irregularities occurred at the same time. Further, the presence of a semantic violation occurring simultaneously with regular chords produced a significant increase in later delta-theta power at posterior regions; this effect was marginally decreased when the identical semantic violation occurred simultaneously with a music syntactical violation. Altogether, these results show that low frequency oscillatory networks get activated during the syntactic processing of both music and language, and further, these networks may possibly be shared.

  2. Laser velocimeter application to oscillatory liquid flows

    NASA Technical Reports Server (NTRS)

    Gartrell, L. R.

    1978-01-01

    A laser velocimeter technique was used to measure the mean velocity and the frequency characteristics of an oscillatory flow component generated with a rotating flapper in liquid flow system at Reynolds numbers approximating 93,000. The velocity information was processed in the frequency domain using a tracker whose output was used to determine the flow spectrum. This was accomplished with the use of an autocorrelator/Fourier transform analyzer and a spectrum averaging analyzer where induced flow oscillations up to 40 Hz were detected. Tests were conducted at a mean flow velocity of approximately 2 m/s. The experimental results show that the laser velocimeter can provide quantitative information such as liquid flow velocity and frequency spectrum with a possible application to cryogenic fluid flows.

  3. Automatic control of oscillatory penetration apparatus

    DOEpatents

    Lucon, Peter A

    2015-01-06

    A system and method for controlling an oscillatory penetration apparatus. An embodiment is a system and method for controlling a sonic drill having a displacement and an operating range and operating at a phase difference, said sonic drill comprising a push-pull piston and eccentrics, said method comprising: operating the push-pull piston at an initial push-pull force while the eccentrics are operated at a plurality of different operating frequencies within the operating range of the sonic drill and measuring the displacement at each operating frequency; determining an efficient operating frequency for the material being drilled and operating the eccentrics at said efficient operating frequency; determining the phase difference at which the sonic drill is operating; and if the phase difference is not substantially equal to minus ninety degrees, operating the push-pull piston at another push-pull force.

  4. Oscillatory patterns in a rotating aqueous suspension.

    PubMed

    Breu, A P J; Kruelle, C A; Rehberg, I

    2004-02-01

    Suspensions of granular material in glycerin-water mixtures agitated in horizontally aligned rotating tubes show a whole variety of patterns. The stationary pattern of a homogeneous distribution and a chain of rings have been investigated before. Here we report on two types of oscillatory states in the same system. For a certain range of the rotation frequency and sufficiently high viscosity traveling waves propagate with constant velocity back and forth along the tube in an almost homogeneous distribution of sedimenting particles. The transition from a stationary to the traveling-wave state is found to be an imperfect supercritical bifurcation. The dependence of the wave length and speed on the tube's rotation frequency and the dynamic viscosity of the fluid are determined. Experiments with low viscosities show no traveling waves but low-frequency oscillations, when the previously known chain of rings undergoes a secondary instability.

  5. Vortex generation in oscillatory canopy flow

    NASA Astrophysics Data System (ADS)

    Ghisalberti, Marco; Schlosser, Tamara

    2013-03-01

    In this paper, we demonstrate for the first time the generation of coherent vortices at the top of a canopy in oscillatory (i.e., wave-dominated) flow. Through a series of flow visualization experiments, vortex formation is shown to occur when two conditions described by the Keulegan-Carpenter (KC) and Reynolds (Re) numbers are met. First, the wave period must be sufficiently long to allow the generation of the shear-driven instability at the top of the canopy; this occurs when KC ≳ 5. Second, the vortex instability must be able to overcome the stabilizing effects of viscosity; this occurs when Re ≳ 1000. The vortices greatly increase the rate of vertical mixing within the canopy, such that any prediction of residence time in a coastal canopy requires an understanding of whether vortex generation is occurring.

  6. Phase Slips in Oscillatory Hair Bundles

    NASA Astrophysics Data System (ADS)

    Roongthumskul, Yuttana; Shlomovitz, Roie; Bruinsma, Robijn; Bozovic, Dolores

    2013-04-01

    Hair cells of the inner ear contain an active amplifier that allows them to detect extremely weak signals. As one of the manifestations of an active process, spontaneous oscillations arise in fluid immersed hair bundles of in vitro preparations of selected auditory and vestibular organs. We measure the phase-locking dynamics of oscillatory bundles exposed to low-amplitude sinusoidal signals, a transition that can be described by a saddle-node bifurcation on an invariant circle. The transition is characterized by the occurrence of phase slips, at a rate that is dependent on the amplitude and detuning of the applied drive. The resultant staircase structure in the phase of the oscillation can be described by the stochastic Adler equation, which reproduces the statistics of phase slip production.

  7. Essentially Non-Oscillatory and Weighted Essentially Non-Oscillatory Schemes for Hyperbolic Conservation Laws

    NASA Technical Reports Server (NTRS)

    Shu, Chi-Wang

    1997-01-01

    In these lecture notes we describe the construction, analysis, and application of ENO (Essentially Non-Oscillatory) and WENO (Weighted Essentially Non-Oscillatory) schemes for hyperbolic conservation laws and related Hamilton- Jacobi equations. ENO and WENO schemes are high order accurate finite difference schemes designed for problems with piecewise smooth solutions containing discontinuities. The key idea lies at the approximation level, where a nonlinear adaptive procedure is used to automatically choose the locally smoothest stencil, hence avoiding crossing discontinuities in the interpolation procedure as much as possible. ENO and WENO schemes have been quite successful in applications, especially for problems containing both shocks and complicated smooth solution structures, such as compressible turbulence simulations and aeroacoustics. These lecture notes are basically self-contained. It is our hope that with these notes and with the help of the quoted references, the reader can understand the algorithms and code them up for applications.

  8. Oscillatory coupling in writing and writer's cramp.

    PubMed

    Butz, Markus; Timmermann, Lars; Gross, Joachim; Pollok, Bettina; Dirks, Martin; Hefter, Harald; Schnitzler, Alfons

    2006-01-01

    Writing is a highly skilled and overlearned movement. In patients suffering from writer's cramp, a focal task-induced dystonia, writing is impaired or even impossible due to involuntary muscle contractions and abnormal posture, which occur as soon as the person picks up a pen or within writing a few words. The underlying pathophysiological mechanisms of this movement disorder are not fully understood up to now. The aim of the present study was to unravel the oscillatory network underlying physiological writing in healthy subjects and dystonic writing in writer's cramp patients. Using whole-head magnetoencephalography (MEG) and the analysis tool dynamic imaging of coherent sources (DICS) we studied oscillatory neural coupling during writing in eleven healthy subjects and eight patients suffering from writer's cramp. Simultaneous recording of brain activity with MEG and activity of forearm and hand muscles with surface electromyography (EMG) was performed while subjects were writing for five minutes with their dominant right hand. Applying DICS sources of strongest cerebro-muscular coherence and cerebro-cerebral coherence during writing were identified, which consistently included six brain areas in both, the control subjects and the patients: contralateral and ipsilateral sensorimotor cortex, ipsilateral cerebellum, contralateral thalamus, contralateral premotor and posterior parietal cortex. Coherence between cortical sources and muscles appeared primarily in the frequency of writing movements (3-7 Hz) while coherence between cerebral sources occurred primarily around 10 Hz (8-13 Hz). Interestingly, consistent coupling between both sensorimotor cortices was observed in patients only, whereas coupling between ipsilateral cerebellum and the contralateral posterior parietal cortex was found in control subjects only. These results are consistent with the often described bilateral pathophysiology and impaired sensorimotor integration in writer's cramp patients.

  9. Oscillatory Phenomena in a Solar Network Region

    NASA Astrophysics Data System (ADS)

    Tziotziou, K.; Tsiropoula, G.; Schwartz, P.; Heinzel, P.

    2008-09-01

    Multi-wavelength, multi-instrument observations, obtained during a coordinated observing campaign on October 2005 by the ground-based Dutch Open Telescope (DOT), and by instruments on the spacecraft Solar and Heliospheric Observatory (SoHO) and Transition Region and Coronal Explorer (TRACE), are used to study oscillatory phenomena in a solar network region. Temporal variations of the intensities and velocities in a region of the quiet Sun containing several dark mottles and in a region with several bright points defining the network boundaries (NB) are investigated with the aim of finding similarities and/or differences in the oscillatory phenomena observed in these two regions and in different spectral lines formed from the chromosphere to the transition region, as well as propagation characteristics of waves. A wavelet, phase difference and coherence analyses were performed indicating a periodicity around 5 min in all considered lines for both regions. V-V phase differences in the NB region point to an upward propagation of, most probably, acoustic waves, while in the region of mottles they indicate a non vertical propagation of waves, due to the presence of several inclined mottles along the line-of-sight. In mottles, for periods of 250-400 s the phase difference is mainly negative suggesting that propagating waves encounter a boundary and are refracted and reflected. However, limitations arising from the complex topology of the magnetic field, the formation conditions and heights of the examined spectral lines and the low spatial resolution of the space instruments influence the exact interpretation of the phase differences.

  10. Droplet migration characteristics in confined oscillatory microflows

    NASA Astrophysics Data System (ADS)

    Chaudhury, Kaustav; Mandal, Shubhadeep; Chakraborty, Suman

    2016-02-01

    We analyze the migration characteristics of a droplet in an oscillatory flow field in a parallel plate microconfinement. Using phase field formalism, we capture the dynamical evolution of the droplet over a wide range of the frequency of the imposed oscillation in the flow field, drop size relative to the channel gap, and the capillary number. The latter two factors imply the contribution of droplet deformability, commonly considered in the study of droplet migration under steady shear flow conditions. We show that the imposed oscillation brings an additional time complexity in the droplet movement, realized through temporally varying drop shape, flow direction, and the inertial response of the droplet. As a consequence, we observe a spatially complicated pathway of the droplet along the transverse direction, in sharp contrast to the smooth migration under a similar yet steady shear flow condition. Intuitively, the longitudinal component of the droplet movement is in tandem with the flow continuity and evolves with time at the same frequency as that of the imposed oscillation, although with an amplitude decreasing with the frequency. The time complexity of the transverse component of the movement pattern, however, cannot be rationalized through such intuitive arguments. Towards bringing out the underlying physics, we further endeavor in a reciprocal identity based analysis. Following this approach, we unveil the time complexities of the droplet movement, which appear to be sufficient to rationalize the complex movement patterns observed through the comprehensive simulation studies. These results can be of profound importance in designing droplet based microfluidic systems in an oscillatory flow environment.

  11. FIFTH SEMINAR IN MEMORY OF D.N. KLYSHKO: Parametric oscillatory instability in a signal-recycled LIGO interferometer

    NASA Astrophysics Data System (ADS)

    Vyatchanin, S. P.; Strigin, S. E.

    2007-12-01

    The undesirable effect of parametric oscillatory instability in a LIGO (Laser Interferometer Gravitational-Wave Observatory) laser gravitational-wave antenna with a signal-recirculation mirror is analysed in detail. The instability is manifested in excitation of the Stokes optical mode and elastic mechanical mode of the mirror. It is shown that, if the eigenfrequencies of Fabry-Perot resonators in the interferometer arms are different, the parametric instability is quite small due to a small passband band width.

  12. Single-trial analysis of cortical oscillatory activities during voluntary movements using empirical mode decomposition (EMD)-based spatiotemporal approach.

    PubMed

    Lee, Po-Lei; Shang, Li-Zen; Wu, Yu-Te; Shu, Chih-Hung; Hsieh, Jen-Chuen; Lin, Yung-Yang; Wu, Chi-Hsun; Liu, Yu-Lu; Yang, Chia-Yen; Sun, Chia-Wei; Shyu, Kuo-Kai

    2009-08-01

    This study presents a method based on empirical mode decomposition (EMD) and a spatial template-based matching approach to extract sensorimotor oscillatory activities from multi-channel magnetoencephalographic (MEG) measurements during right index finger lifting. The longitudinal gradiometer of the sensor unit which presents most prominent SEF was selected on which each single-trial recording was decomposed into a set of intrinsic mode functions (IMFs). The correlation between each IMF of the selected channel and raw data on other channels were created and represented as a spatial map. The sensorimotor-related IMFs with corresponding correlational spatial map exhibiting large values on primary sensorimotor area (SMI) were selected via spatial-template matching process. Trial-specific alpha and beta bands were determined in sensorimotor-related oscillatory activities using a two-spectrum comparison between the spectra obtained from baseline period (-4 to -3 s) and movement-onset period (-0.5 to 0.5 s). Sensorimotor-related oscillatory activities were filtered within the trial-specific frequency bands to resolve task-related oscillatory activities. Results demonstrated that the optimal phase and amplitude information were preserved not only for alpha suppression (event-related desynchronization) and beta rebound (event-related synchronization) but also for profound analysis of subtle dynamics across trials. The retention of high SNR in the extracted oscillatory activities allow various methods of source estimation that can be applied to study the intricate brain dynamics of motor control mechanisms. The present study enables the possibility of investigating cortical pathophysiology of movement disorder on a trial-by-trial basis which also permits an effective alternative for participants or patients who can not endure lengthy procedures or are incapable of sustaining long experiments.

  13. Asymmetric reproductive isolation between terminal forms of the salamander ring species Ensatina eschscholtzii revealed by fine-scale genetic analysis of a hybrid zone

    PubMed Central

    2011-01-01

    Background Ring species, exemplified by salamanders of the Ensatina eschscholtzii complex, represent a special window into the speciation process because they allow the history of species formation to be traced back in time through the geographically differentiated forms connecting the two terminal forms of the ring. Of particular interest is the nature and extent of reproductive isolation between the geographically terminal forms, in this case E. e. eschscholtzii and E. e. klauberi. Previous studies have documented infrequent hybridization at the end of the ring. Here, we report the first fine-scale genetic analysis of a hybrid zone between the terminal forms in southern California using individual-based Bayesian analyses of multilocus genetic data to estimate levels and direction of hybridization and maximum-likelihood analysis of linkage disequilibrium and cline shape to make inferences about migration and selection in the hybrid zone. Results The center of the hybrid zone has a high proportion of hybrids, about half of which were classified as F1s. Clines are narrow with respect to dispersal, and there are significant deviations from Hardy-Weinberg equilibrium as well as nonrandom associations (linkage disequilibria) between alleles characteristic of each parental type. There is cytonuclear discordance, both in terms of introgression and the geographic position of mitochondrial versus nuclear clines. Genetic disequilibrium is concentrated on the eschscholtzii side of the zone. Nearly all hybrids possess klauberi mtDNA, indicating that most hybrids are formed from female klauberi mating with male eschscholtzii or male hybrids (but not vice versa). Conclusions Our results are consistent with a tension zone trapped at an ecotone, with gene combinations characteristic of klauberi showing up on the eschscholtzii side of the zone due to asymmetric hybridization. We suggest that the observed asymmetry is best explained by increased discriminatory power of

  14. New Multilocus Variable-Number Tandem-Repeat Analysis (MLVA) Scheme for Fine-Scale Monitoring and Microevolution-Related Study of Ralstonia pseudosolanacearum Phylotype I Populations.

    PubMed

    Guinard, Jérémy; Latreille, Anne; Guérin, Fabien; Poussier, Stéphane; Wicker, Emmanuel

    2017-03-01

    Bacterial wilt caused by the Ralstonia solanacearum species complex (RSSC) is considered one of the most harmful plant diseases in the world. Special attention should be paid to R. pseudosolanacearum phylotype I due to its large host range, its worldwide distribution, and its high evolutionary potential. So far, the molecular epidemiology and population genetics of this bacterium are poorly understood. Until now, the genetic structure of the RSSC has been analyzed on the worldwide and regional scales. Emerging questions regarding evolutionary forces in RSSC adaptation to hosts now require genetic markers that are able to monitor RSSC field populations. In this study, we aimed to evaluate the multilocus variable-number tandem-repeat analysis (MLVA) approach for its ability to discriminate genetically close phylotype I strains and for population genetics studies. We developed a new MLVA scheme (MLVA-7) allowing us to genotype 580 R. pseudosolanacearum phylotype I strains extracted from susceptible and resistant hosts and from different habitats (stem, soil, and rhizosphere). Based on specificity, polymorphism, and the amplification success rate, we selected seven fast-evolving variable-number tandem-repeat (VNTR) markers. The newly developed MLVA-7 scheme showed higher discriminatory power than the previously published MLVA-13 scheme when applied to collections sampled from the same location on different dates and to collections from different locations on very small scales. Our study provides a valuable tool for fine-scale monitoring and microevolution-related study of R. pseudosolanacearum phylotype I populations.IMPORTANCE Understanding the evolutionary dynamics of adaptation of plant pathogens to new hosts or ecological niches has become a key point for the development of innovative disease management strategies, including durable resistance. Whereas the molecular mechanisms underlying virulence or pathogenicity changes have been studied thoroughly, the

  15. Evaluation of seabed mapping methods for fine-scale classification of extremely shallow benthic habitats - Application to the Venice Lagoon, Italy

    NASA Astrophysics Data System (ADS)

    Montereale Gavazzi, G.; Madricardo, F.; Janowski, L.; Kruss, A.; Blondel, P.; Sigovini, M.; Foglini, F.

    2016-03-01

    Recent technological developments of multibeam echosounder systems (MBES) allow mapping of benthic habitats with unprecedented detail. MBES can now be employed in extremely shallow waters, challenging data acquisition (as these instruments were often designed for deeper waters) and data interpretation (honed on datasets with resolution sometimes orders of magnitude lower). With extremely high-resolution bathymetry and co-located backscatter data, it is now possible to map the spatial distribution of fine scale benthic habitats, even identifying the acoustic signatures of single sponges. In this context, it is necessary to understand which of the commonly used segmentation methods is best suited to account for such level of detail. At the same time, new sampling protocols for precisely geo-referenced ground truth data need to be developed to validate the benthic environmental classification. This study focuses on a dataset collected in a shallow (2-10 m deep) tidal channel of the Lagoon of Venice, Italy. Using 0.05-m and 0.2-m raster grids, we compared a range of classifications, both pixel-based and object-based approaches, including manual, Maximum Likelihood Classifier, Jenks Optimization clustering, textural analysis and Object Based Image Analysis. Through a comprehensive and accurately geo-referenced ground truth dataset, we were able to identify five different classes of the substrate composition, including sponges, mixed submerged aquatic vegetation, mixed detritic bottom (fine and coarse) and unconsolidated bare sediment. We computed estimates of accuracy (namely Overall, User, Producer Accuracies and the Kappa statistic) by cross tabulating predicted and reference instances. Overall, pixel based segmentations produced the highest accuracies and the accuracy assessment is strongly dependent on the number of classes chosen for the thematic output. Tidal channels in the Venice Lagoon are extremely important in terms of habitats and sediment distribution

  16. Fine-scale spatial and temporal plankton distributions in the Southern California Bight: lessons from in situ microscopes and broadband echosounders

    NASA Astrophysics Data System (ADS)

    Briseno-Avena, Christian

    Phytoplankton and zooplankton are important components of marine ecosystems, and play a major role in the biological pump, affecting carbon transport in the global oceans. Their dynamic heterogeneous spatial and temporal distributions require special tools for observing them at the ecological scales relevant to the individual organisms. In this work, I used optic and acoustic methods to study plankton organisms at spatial scales of meters and temporal scales ranging from minutes to months. Using two in situ microscopes I described the fine-scale vertical distribution of phytoplankton and several zooplankton taxa in a coastal location in the Southern California Bight. Highly resolved spatial observations revealed cryptic maxima of fluorescent particles not observed with traditional fluorometers. Furthermore, this high sampling resolution revealed that water density, and not depth, regulated the vertical position, and interactions between observed phytoplankton and zooplankton distributions. Underwater acoustic echosounders can be powerful tools to observe in situ plankton distributions. Interpreting the acoustic echoes, however, requires highly calibrated instruments and ground-truthing experiments to identify the source of acoustic signals. This work presents the description of a novel combination of a broadband, high-frequency (1.5-2.5 MHz) echosounder and a stereoscopic camera --combined, these systems can localize the echo produced by an individual target while simultaneously providing visual identification of the target. This work has provided one of the first comparisons of in situ measured broadband target strength (BTS) and the expected signal using a physical model. The results of this experiment revealed unexpected, important differences between measured and modeled BTS. This system was also used to make in situ observations of individual fragile gelatinous organisms, marine snow particles and phytoplankton, providing evidence of their significant acoustic

  17. Resonant alignment of microswimmer trajectories in oscillatory shear flows

    NASA Astrophysics Data System (ADS)

    Hope, Alexander; Croze, Ottavio A.; Poon, Wilson C. K.; Bees, Martin A.; Haw, Mark D.

    2016-09-01

    Oscillatory flows are commonly experienced by swimming micro-organisms in the environment, industrial applications, and rheological investigations. We characterize experimentally the response of the alga Dunaliella salina to oscillatory shear flows and report the surprising discovery that algal swimming trajectories orient perpendicular to the flow-shear plane. The ordering has the characteristics of a resonance in the driving parameter space. The behavior is qualitatively reproduced by a simple model and simulations accounting for helical swimming, suggesting a mechanism for ordering and criteria for the resonant amplitude and frequency. The implications of this work for active oscillatory rheology and industrial algal processing are discussed.

  18. Control of Oscillatory Thermocapillary Convection in Microgravity

    NASA Technical Reports Server (NTRS)

    Skarda, Ray

    1998-01-01

    This project focused on the generation and suppression of oscillatory thermocapillary convection in a thin liquid layer. The bulk of the research was experimental in nature, some theoretical work was also done. ne first phase of this research generated, for the first time, the hydrothermal-wave instability predicted by Smith and Davis in 1983. In addition, the behavior of the fluid layer under a number of conditions was investigated and catalogued. A transition map for the instability of buoyancy-thermocapillary convection was prepared which presented results in terms of apparatus-dependent and apparatus-independent parameters, for ease of comparison with theoretical results. The second phase of this research demonstrated the suppression of these hydrothermal waves through an active, feed-forward control strategy employing a CO2 laser to selectively heat lines of negative disturbance temperature on the free surface of the liquid layer. An initial attempt at this control was only partially successful, employing a thermocouple inserted slightly below the free surface of the liquid to generate the control scheme. Subsequent efforts, however, were completely successful in suppressing oscillations in a portion of the layer by utilizing data from an infrared image of the free surface to compute hydrothermal-wave phase speeds and, using these, to tailor the control scheme to each passing wave.

  19. Plant shoots exhibit synchronized oscillatory motions

    PubMed Central

    Ciszak, Marzena; Masi, Elisa; Baluška, František; Mancuso, Stefano

    2016-01-01

    ABSTRACT In animals, the ability to move has evolved as an important means of protection from predators and for enhancing nutrient uptake. In the animal kingdom, an individual's movements may become coordinated with those of other individuals that belong to the same group, which leads, for example, to the beautiful collective patterns that are observed in flocks of birds and schools of fish or in animal migration. Land plants, however, are fixed to the ground, which limits their movement and, apparently, their interactions and collective behaviors. We show that emergent maize plants grown in a group exhibit synchronized oscillatory motions that may be in-phase or anti-phase. These oscillations occur in short bursts and appear when the leaves rupture from the coleoptile tip. The appearance of these oscillations indicates an abrupt increase in the plant growth rate, which may be associated with a sudden change in the energy uptake for photosynthesis. Our results suggest that plant shoots behave as a complex network of biological oscillators, interacting through biophysical links, e.g. chemical substances or electric signals. PMID:27829981

  20. Autocatalytic Reaction Front Propagation in Oscillatory Flows

    NASA Astrophysics Data System (ADS)

    Leconte, Marc; Martin, Jerome; Rakotomalala, Nicole; Salin, Dominique

    2003-11-01

    Laboratoire Fluides Automatique et Systèmes Thermiques, Universités P. et M. Curie and Paris Sud, C.N.R.S. (UMR 7608) Bâtiment 502, Campus Universitaire, 91405 Orsay Cedex, France. Autocatalytic reaction front between two reacting species is able to propagate as a solitary wave that is at a constant velocity and with a stationary concentration profile resulting from a balance between molecular diffusion and chemical reaction. On the other hand, in laminar flow the association of molecular diffusion and convection leads to an overall diffusion effect, the so-called Taylor dispersion, with a flow dependent enhanced dispersion coefficient. Previous experiments have demonstrated the dissymmetry between supportive and adverse advection flows compared to the reaction front propagation without flow. We analyze experimentally the effect of laminar oscillatory flow on the propagation and on the shape of the fronts in the Iodate-Arsenous Acid autocatalytic reaction in micro Hele-Shaw cells. We observe new solitary waves whose velocity and shape depend on the relative importance of advection, diffusion and reaction. The results are in reasonable with our lattice 3D BGK simulations.

  1. Processing oscillatory signals by incoherent feedforward loops

    NASA Astrophysics Data System (ADS)

    Zhang, Carolyn; Wu, Feilun; Tsoi, Ryan; Shats, Igor; You, Lingchong

    From the timing of amoeba development to the maintenance of stem cell pluripotency,many biological signaling pathways exhibit the ability to differentiate between pulsatile and sustained signals in the regulation of downstream gene expression.While networks underlying this signal decoding are diverse,many are built around a common motif, the incoherent feedforward loop (IFFL),where an input simultaneously activates an output and an inhibitor of the output.With appropriate parameters,this motif can generate temporal adaptation,where the system is desensitized to a sustained input.This property serves as the foundation for distinguishing signals with varying temporal profiles.Here,we use quantitative modeling to examine another property of IFFLs,the ability to process oscillatory signals.Our results indicate that the system's ability to translate pulsatile dynamics is limited by two constraints.The kinetics of IFFL components dictate the input range for which the network can decode pulsatile dynamics.In addition,a match between the network parameters and signal characteristics is required for optimal ``counting''.We elucidate one potential mechanism by which information processing occurs in natural networks with implications in the design of synthetic gene circuits for this purpose. This work was partially supported by the National Science Foundation Graduate Research Fellowship (CZ).

  2. Plant shoots exhibit synchronized oscillatory motions.

    PubMed

    Ciszak, Marzena; Masi, Elisa; Baluška, František; Mancuso, Stefano

    2016-01-01

    In animals, the ability to move has evolved as an important means of protection from predators and for enhancing nutrient uptake. In the animal kingdom, an individual's movements may become coordinated with those of other individuals that belong to the same group, which leads, for example, to the beautiful collective patterns that are observed in flocks of birds and schools of fish or in animal migration. Land plants, however, are fixed to the ground, which limits their movement and, apparently, their interactions and collective behaviors. We show that emergent maize plants grown in a group exhibit synchronized oscillatory motions that may be in-phase or anti-phase. These oscillations occur in short bursts and appear when the leaves rupture from the coleoptile tip. The appearance of these oscillations indicates an abrupt increase in the plant growth rate, which may be associated with a sudden change in the energy uptake for photosynthesis. Our results suggest that plant shoots behave as a complex network of biological oscillators, interacting through biophysical links, e.g. chemical substances or electric signals.

  3. Exercise oscillatory ventilation: Mechanisms and prognostic significance

    PubMed Central

    Dhakal, Bishnu P; Lewis, Gregory D

    2016-01-01

    Alteration in breathing patterns characterized by cyclic variation of ventilation during rest and during exercise has been recognized in patients with advanced heart failure (HF) for nearly two centuries. Periodic breathing (PB) during exercise is known as exercise oscillatory ventilation (EOV) and is characterized by the periods of hyperpnea and hypopnea without interposed apnea. EOV is a non-invasive parameter detected during submaximal cardiopulmonary exercise testing. Presence of EOV during exercise in HF patients indicates significant impairment in resting and exercise hemodynamic parameters. EOV is also an independent risk factor for poor prognosis in HF patients both with reduced and preserved ejection fraction irrespective of other gas exchange variables. Circulatory delay, increased chemosensitivity, pulmonary congestion and increased ergoreflex signaling have been proposed as the mechanisms underlying the generation of EOV in HF patients. There is no proven treatment of EOV but its reversal has been noted with phosphodiesterase inhibitors, exercise training and acetazolamide in relatively small studies. In this review, we discuss the mechanistic basis of PB during exercise and the clinical implications of recognizing PB patterns in patients with HF. PMID:27022457

  4. Oscillatory Mechanisms in Catalytic CO Oxidation

    NASA Astrophysics Data System (ADS)

    Lund, C. D.; Yamamoto, S. Y.; Surko, C. M.; Maple, M. B.

    1996-03-01

    For nearly twenty years, temporal reaction-rate oscillations in catalytic reactions on metal surfaces have been observed. The most thoroughly studied of these is the oxidation of carbon monoxide on platinum catalysts, both at atmospheric pressure and under UHV conditions. While the oscillations observed under UHV conditions have been shown to be due to a restructuring of the catalyst by adsorbed carbon monoxide, no mechanism has been conclusively shown to be responsible for the oscillations observed under atmospheric conditions. We have developed a system in which oscillations on carefully prepared thin-film catalysts in a continuous flow reactor are highly reproducible, thereby allowing us to study the possible oscillatory mechanisms. footnote S.Y. Yamamoto, C.M. Surko, M.B. Maple, and R.K. Pina, J. Chem. Phys. 102, 8614 (1995). We have been able to discriminate between current theoretical models through a series of reactant gas pretreatments, and we find that the oscillations we observe are consistent with a slow oxidation and reduction of the catalyst surface. [6pt] This work is supported by the Office of Naval Research.

  5. A Statistical Study on Oscillatory Protein Expression

    NASA Astrophysics Data System (ADS)

    Yan, Shiwei

    Motivated by the experiments on the dynamics of a common network motif, p53 and Mdm2 feedback loop, by Lahav et al. [Nat. Genet 36, 147(2004)] in individual cells and Lev Bar-or et al. [Proc. Natl. Acad. Sci. USA 97, 11250(2000)] at the population of cells, we propose a statistical signal-response model with aiming to describe the different oscillatory behaviors for the activities of p53 and Mdm2 proteins both in individual and in population of cells in a unified way. At the cellular level, the activities of p53 and Mdm2 proteins are described by a group of nonlinear dynamical equations where the damage-derived signal is assumed to have the form with abrupt transition (”on” leftrightarrow ”off”) as soon as signal strength passes forth and back across a threshold. Each cell responses to the damage with different time duration within which the oscillations persist. For the case of population of cells, the activities of p53 and Mdm2 proteins will be the population average of the individual cells, which results damped oscillations, due to the averaging over the cell population with the different response time.

  6. EEG neural oscillatory dynamics reveal semantic and response conflict at difference levels of conflict awareness.

    PubMed

    Jiang, Jun; Zhang, Qinglin; Van Gaal, Simon

    2015-07-14

    Although previous work has shown that conflict can be detected in the absence of awareness, it is unknown how different sources of conflict (i.e., semantic, response) are processed in the human brain and whether these processes are differently modulated by conflict awareness. To explore this issue, we extracted oscillatory power dynamics from electroencephalographic (EEG) data recorded while human participants performed a modified version of the Stroop task. Crucially, in this task conflict awareness was manipulated by masking a conflict-inducing color word preceding a color patch target. We isolated semantic from response conflict by introducing four color words/patches, of which two were matched to the same response. We observed that both semantic as well as response conflict were associated with mid-frontal theta-band and parietal alpha-band power modulations, irrespective of the level of conflict awareness (high vs. low), although awareness of conflict increased these conflict-related power dynamics. These results show that both semantic and response conflict can be processed in the human brain and suggest that the neural oscillatory mechanisms in EEG reflect mainly "domain general" conflict processing mechanisms, instead of conflict source specific effects.

  7. Understanding the benefits of musical training: effects on oscillatory brain activity.

    PubMed

    Trainor, Laurel J; Shahin, Antoine J; Roberts, Larry E

    2009-07-01

    A number of studies suggest that musical training has benefits for other cognitive domains, such as language and mathematics, and studies of children and adults indicate structural as well as functional differences between the brains of musicians and nonmusicians. The induced gamma-band response has been associated with attentional, expectation, memory retrieval, and integration of top-down, bottom-up, and multisensory processes. Here we report data indicating that the induced gamma-band response to musical sounds is larger in adult musicians than in nonmusicians and that it develops in children after 1 year of musical training beginning at age 4.5 years, but not in children of this age who are not engaged in musical lessons. We conclude that musical training affects oscillatory networks in the brain associated with executive functions, and that superior executive functioning could enhance learning and performance in many cognitive domains.

  8. Oscillatory traveling wave solutions to an attractive chemotaxis system

    NASA Astrophysics Data System (ADS)

    Li, Tong; Liu, Hailiang; Wang, Lihe

    2016-12-01

    This paper investigates oscillatory traveling wave solutions to an attractive chemotaxis system. The convective part of this system changes its type when crossing a parabola in the phase space. The oscillatory nature of the traveling wave comes from the fact that one far-field state is in the elliptic region and another in the hyperbolic region. Such traveling wave solutions are shown to be linearly unstable. Detailed construction of some traveling wave solutions is presented.

  9. Robust Concentration and Frequency Control in Oscillatory Homeostats

    PubMed Central

    Thorsen, Kristian; Agafonov, Oleg; Selstø, Christina H.; Jolma, Ingunn W.; Ni, Xiao Y.; Drengstig, Tormod; Ruoff, Peter

    2014-01-01

    Homeostatic and adaptive control mechanisms are essential for keeping organisms structurally and functionally stable. Integral feedback is a control theoretic concept which has long been known to keep a controlled variable robustly (i.e. perturbation-independent) at a given set-point by feeding the integrated error back into the process that generates . The classical concept of homeostasis as robust regulation within narrow limits is often considered as unsatisfactory and even incompatible with many biological systems which show sustained oscillations, such as circadian rhythms and oscillatory calcium signaling. Nevertheless, there are many similarities between the biological processes which participate in oscillatory mechanisms and classical homeostatic (non-oscillatory) mechanisms. We have investigated whether biological oscillators can show robust homeostatic and adaptive behaviors, and this paper is an attempt to extend the homeostatic concept to include oscillatory conditions. Based on our previously published kinetic conditions on how to generate biochemical models with robust homeostasis we found two properties, which appear to be of general interest concerning oscillatory and homeostatic controlled biological systems. The first one is the ability of these oscillators (“oscillatory homeostats”) to keep the average level of a controlled variable at a defined set-point by involving compensatory changes in frequency and/or amplitude. The second property is the ability to keep the period/frequency of the oscillator tuned within a certain well-defined range. In this paper we highlight mechanisms that lead to these two properties. The biological applications of these findings are discussed using three examples, the homeostatic aspects during oscillatory calcium and p53 signaling, and the involvement of circadian rhythms in homeostatic regulation. PMID:25238410

  10. Neuro-oscillatory phase alignment drives speeded multisensory response times: an electro-corticographic investigation.

    PubMed

    Mercier, Manuel R; Molholm, Sophie; Fiebelkorn, Ian C; Butler, John S; Schwartz, Theodore H; Foxe, John J

    2015-06-03

    Even simple tasks rely on information exchange between functionally distinct and often relatively distant neuronal ensembles. Considerable work indicates oscillatory synchronization through phase alignment is a major agent of inter-regional communication. In the brain, different oscillatory phases correspond to low- and high-excitability states. Optimally aligned phases (or high-excitability states) promote inter-regional communication. Studies have also shown that sensory stimulation can modulate or reset the phase of ongoing cortical oscillations. For example, auditory stimuli can reset the phase of oscillations in visual cortex, influencing processing of a simultaneous visual stimulus. Such cross-regional phase reset represents a candidate mechanism for aligning oscillatory phase for inter-regional communication. Here, we explored the role of local and inter-regional phase alignment in driving a well established behavioral correlate of multisensory integration: the redundant target effect (RTE), which refers to the fact that responses to multisensory inputs are substantially faster than to unisensory stimuli. In a speeded detection task, human epileptic patients (N = 3) responded to unisensory (auditory or visual) and multisensory (audiovisual) stimuli with a button press, while electrocorticography was recorded over auditory and motor regions. Visual stimulation significantly modulated auditory activity via phase reset in the delta and theta bands. During the period between stimulation and subsequent motor response, transient synchronization between auditory and motor regions was observed. Phase synchrony to multisensory inputs was faster than to unisensory stimulation. This sensorimotor phase alignment correlated with behavior such that stronger synchrony was associated with faster responses, linking the commonly observed RTE with phase alignment across a sensorimotor network.

  11. Band heterotopia.

    PubMed

    Alam, M S; Naila, N

    2010-01-01

    Band heterotopias are one of the rarest groups of congenital disorder that result in variable degree of structural abnormality of brain parenchyma. Band of heterotopic neurons result from a congenital or acquired deficiency of the neuronal migration. MRI is the examination of choice for demonstrating these abnormalities because of the superb gray vs. white matter differentiation, detail of cortical anatomy and ease of multiplanar imaging. We report a case of band heterotopia that showed a bilateral band of gray matter in deep white matter best demonstrated on T2 Wt. and FLAIR images.

  12. Nonlinear oscillatory rheology and structure of wormlike micellar solutions and colloidal suspensions

    NASA Astrophysics Data System (ADS)

    Gurnon, Amanda Kate

    this constitutive model are tested by comparison with experiments on model WLM solutions. Further comparisons to the nonlinear oscillatory shear responses measured from colloidal suspensions establishes this analysis as a promising, quantitative method for understanding the underlying mechanisms responsible for the nonlinear dynamic response of complex fluids. A new experimental technique is developed to measure the microstructure of complex fluids during steady and transient shear flow using small-angle neutron scattering (SANS). The Flow-SANS experimental method is now available to the broader user communities at the NIST Center for Neutron Research, Gaithersburg, MD and the Institut Laue-Langevin, Grenoble, France. Using this new method, a model shear banding WLM solution is interrogated under steady and oscillatory shear. For the first time, the flow-SANS methods identify new metastable states for shear banding WLM solutions, thus establishing the method as capable of probing new states not accessible using traditional steady or linear oscillatory shear methods. The flow-induced three-dimensional microstructure of a colloidal suspension under steady and dynamic oscillatory shear is also measured using these rheo- and flow-SANS methods. A new structure state is identified in the shear thickening regime that proves critical for defining the "hydrocluster" microstructure state of the suspension that is responsible for shear thickening. For both the suspensions and the WLM solutions, stress-SANS rules with the measured microstructures define the individual stress components arising separately from conservative and hydrodynamic forces and these are compared with the macroscopic rheology. Analysis of these results defines the crucial length- and time-scales of the transient microstructure response. The novel dynamic microstructural measurements presented in this dissertation provide new insights into the complexities of shear thickening and shear banding flow phenomena

  13. The relationship between oscillatory EEG activity and the laminar-specific BOLD signal

    PubMed Central

    Scheeringa, René; Koopmans, Peter J.; van Mourik, Tim; Jensen, Ole; Norris, David G.

    2016-01-01

    Electrophysiological recordings in animals have indicated that visual cortex γ-band oscillatory activity is predominantly observed in superficial cortical layers, whereas α- and β-band activity is stronger in deep layers. These rhythms, as well as the different cortical layers, have also been closely related to feedforward and feedback streams of information. Recently, it has become possible to measure laminar activity in humans with high-resolution functional MRI (fMRI). In this study, we investigated whether these different frequency bands show a differential relation with the laminar-resolved blood-oxygen level-dependent (BOLD) signal by combining data from simultaneously recorded EEG and fMRI from the early visual cortex. Our visual attention paradigm allowed us to investigate how variations in strength over trials and variations in the attention effect over subjects relate to each other in both modalities. We demonstrate that γ-band EEG power correlates positively with the superficial layers’ BOLD signal and that β-power is negatively correlated to deep layer BOLD and α-power to both deep and superficial layer BOLD. These results provide a neurophysiological basis for human laminar fMRI and link human EEG and high-resolution fMRI to systems-level neuroscience in animals. PMID:27247416

  14. Synchronization of oscillatory chemiluminescence with pulsed light irradiation

    NASA Astrophysics Data System (ADS)

    Takayama, Shunsuke; Okano, Kunihiko; Asakura, Kouichi

    2013-01-01

    A chemical oscillator, the H2O2-KSCN-CuSO4-NaOH system, generates an oscillatory chemiluminescence when luminol is added to this system. Attempts were made to synchronize the oscillatory chemiluminescence with pulsed light irradiation. A period of the chemical oscillation became shorter by the irradiation of white and blue color light, while the oscillatory behavior was scarcely influenced by the irradiation of red light. Pulsed red and white or blue lights were irradiated on either the non-luminol or luminol-added H2O2-KSCN-CuSO4-NaOH system. Synchronization of the chemical oscillation was achieved for 25-30 min in the luminol-added system.

  15. Effects of End-Wall Vibration on Oscillatory Thermocapillary Flow

    NASA Technical Reports Server (NTRS)

    Bhowmick, J.; Kou, Q.; Anilkumar, A.; Grugel, R.; Wang, T.

    2000-01-01

    Our previous float zone experiments 1,2 with NaNO3 revealed that steady thermocapillary flow (TC flow) can be balanced/offset by the controlled surface streaming flow (CSS flow), induced by end-wall vibration. In the current experiments, we are examining the effects of surface streaming flow on steadying/stabilizing oscillatory thermocapillary flow. To this effect, we have set up a controlled NaNO3 half-zone experiment, where the processing parameters like zone dimensions and temperature gradients scan be easily varied to achieve oscillatory TC flow. In the present paper, we discuss the thermal signature of the TC flow, and how it is affected by imposition of CSS flow. The results will also include a comparison of the microstructure of a NaNO3- BaNO3 eutectic, processed under oscillatory TC conditions, with and without imposed CSS flow.

  16. Linked and knotted chimera filaments in oscillatory systems

    NASA Astrophysics Data System (ADS)

    Lau, Hon Wai; Davidsen, Jörn

    2016-07-01

    While the existence of stable knotted and linked vortex lines has been established in many experimental and theoretical systems, their existence in oscillatory systems and systems with nonlocal coupling has remained elusive. Here, we present strong numerical evidence that stable knots and links such as trefoils and Hopf links do exist in simple, complex, and chaotic oscillatory systems if the coupling between the oscillators is neither too short ranged nor too long ranged. In this case, effective repulsive forces between vortex lines in knotted and linked structures stabilize curvature-driven shrinkage observed for single vortex rings. In contrast to real fluids and excitable media, the vortex lines correspond to scroll wave chimeras [synchronized scroll waves with spatially extended (tubelike) unsynchronized filaments], a prime example of spontaneous synchrony breaking in systems of identical oscillators. In the case of complex oscillatory systems, this leads to a topological superstructure combining knotted filaments and synchronization defect sheets.

  17. Oscillatory localization of quantum walks analyzed by classical electric circuits

    NASA Astrophysics Data System (ADS)

    Ambainis, Andris; PrÅ«sis, Krišjānis; Vihrovs, JevgÄ`nijs; Wong, Thomas G.

    2016-12-01

    We examine an unexplored quantum phenomenon we call oscillatory localization, where a discrete-time quantum walk with Grover's diffusion coin jumps back and forth between two vertices. We then connect it to the power dissipation of a related electric network. Namely, we show that there are only two kinds of oscillating states, called uniform states and flip states, and that the projection of an arbitrary state onto a flip state is bounded by the power dissipation of an electric circuit. By applying this framework to states along a single edge of a graph, we show that low effective resistance implies oscillatory localization of the quantum walk. This reveals that oscillatory localization occurs on a large variety of regular graphs, including edge-transitive, expander, and high-degree graphs. As a corollary, high edge connectivity also implies localization of these states, since it is closely related to electric resistance.

  18. Linked and knotted chimera filaments in oscillatory systems.

    PubMed

    Lau, Hon Wai; Davidsen, Jörn

    2016-07-01

    While the existence of stable knotted and linked vortex lines has been established in many experimental and theoretical systems, their existence in oscillatory systems and systems with nonlocal coupling has remained elusive. Here, we present strong numerical evidence that stable knots and links such as trefoils and Hopf links do exist in simple, complex, and chaotic oscillatory systems if the coupling between the oscillators is neither too short ranged nor too long ranged. In this case, effective repulsive forces between vortex lines in knotted and linked structures stabilize curvature-driven shrinkage observed for single vortex rings. In contrast to real fluids and excitable media, the vortex lines correspond to scroll wave chimeras [synchronized scroll waves with spatially extended (tubelike) unsynchronized filaments], a prime example of spontaneous synchrony breaking in systems of identical oscillators. In the case of complex oscillatory systems, this leads to a topological superstructure combining knotted filaments and synchronization defect sheets.

  19. Auditory cortical delta-entrainment interacts with oscillatory power in multiple fronto-parietal networks.

    PubMed

    Keitel, Anne; Ince, Robin A A; Gross, Joachim; Kayser, Christoph

    2017-02-15

    The timing of slow auditory cortical activity aligns to the rhythmic fluctuations in speech. This entrainment is considered to be a marker of the prosodic and syllabic encoding of speech, and has been shown to correlate with intelligibility. Yet, whether and how auditory cortical entrainment is influenced by the activity in other speech-relevant areas remains unknown. Using source-localized MEG data, we quantified the dependency of auditory entrainment on the state of oscillatory activity in fronto-parietal regions. We found that delta band entrainment interacted with the oscillatory activity in three distinct networks. First, entrainment in the left anterior superior temporal gyrus (STG) was modulated by beta power in orbitofrontal areas, possibly reflecting predictive top-down modulations of auditory encoding. Second, entrainment in the left Heschl's Gyrus and anterior STG was dependent on alpha power in central areas, in line with the importance of motor structures for phonological analysis. And third, entrainment in the right posterior STG modulated theta power in parietal areas, consistent with the engagement of semantic memory. These results illustrate the topographical network interactions of auditory delta entrainment and reveal distinct cross-frequency mechanisms by which entrainment can interact with different cognitive processes underlying speech perception.

  20. Oscillatory activity in the subthalamic nucleus during arm reaching in Parkinson's disease.

    PubMed

    Joundi, Raed A; Brittain, John-Stuart; Green, Alex L; Aziz, Tipu Z; Brown, Peter; Jenkinson, Ned

    2012-08-01

    Oscillatory activities in the brain within the beta (15-30 Hz) and gamma (70-90 Hz) ranges have been implicated in the generation of voluntary movement. However, their roles remain unclear. Here, we record local field potential activity from the region of the subthalamic nucleus during movement of the contralateral limb in 11 patients with Parkinson's disease. Patients were on their normal dopaminergic medication and were cued to perform arm-reaching movements after a delay period at three different speeds: 'slow', 'normal', and 'fast'. Beta activity desynchronized earlier in response to the cue indicating an upcoming fast reach than to the cues for slow or normal speed movement. There was no difference in the degree of beta desynchronization between reaching speeds and beta desynchronization was established prior to movement onset in all cases. In contrast, synchronization in the gamma range developed during the reaching movement, and was especially pronounced during fast reaching. Thus the timing of suppression in the beta band depended on task demands, whereas the degree of increase in gamma oscillations depended on movement speed. These findings point to functionally segregated roles for different oscillatory frequencies in motor preparation and performance.

  1. Oscillatory Brain Dynamics during Sentence Reading: A Fixation-Related Spectral Perturbation Analysis

    PubMed Central

    Vignali, Lorenzo; Himmelstoss, Nicole A.; Hawelka, Stefan; Richlan, Fabio; Hutzler, Florian

    2016-01-01

    The present study investigated oscillatory brain dynamics during self-paced sentence-level processing. Participants read fully correct sentences, sentences containing a semantic violation and “sentences” in which the order of the words was randomized. At the target word level, fixations on semantically unrelated words elicited a lower-beta band (13–18 Hz) desynchronization. At the sentence level, gamma power (31–55 Hz) increased linearly for syntactically correct sentences, but not when the order of the words was randomized. In the 300–900 ms time window after sentence onsets, theta power (4–7 Hz) was greater for syntactically correct sentences as compared to sentences where no syntactic structure was preserved (random words condition). We interpret our results as conforming with a recently formulated predictive-coding framework for oscillatory neural dynamics during sentence-level language comprehension. Additionally, we discuss how our results relate to previous findings with serial visual presentation vs. self-paced reading. PMID:27199713

  2. Reduced Sensory Oscillatory Activity during Rapid Auditory Processing as a Correlate of Language-Learning Impairment

    PubMed Central

    Heim, Sabine; Friedman, Jennifer Thomas; Keil, Andreas; Benasich, April A.

    2010-01-01

    Successful language acquisition has been hypothesized to involve the ability to integrate rapidly presented, brief acoustic cues in sensory cortex. A body of work has suggested that this ability is compromised in language-learning impairment (LLI). The present research aimed to examine sensory integration during rapid auditory processing by means of electrophysiological measures of oscillatory brain activity using data from a larger longitudinal study. Twenty-nine children with LLI and control participants with typical language development (n=18) listened to tone doublets presented at a temporal interval that is essential for accurate speech processing (70-ms interstimulus interval). The children performed a deviant (pitch change of second tone) detection task, or listened passively. The electroencephalogram was recorded from 64 electrodes. Data were source-projected to the auditory cortices and submitted to wavelet analysis, resulting in time-frequency representations of electrocortical activity. Results show significantly reduced amplitude and phase-locking of early (45–75 ms) oscillations in the gamma-band range (29–52 Hz), specifically in the LLI group, for the second stimulus of the tone doublet. This suggests altered temporal organization of sensory oscillatory activity in LLI when processing rapid sequences. PMID:21822356

  3. Birth of oscillation in coupled non-oscillatory Rayleigh-Duffing oscillators

    NASA Astrophysics Data System (ADS)

    Guin, A.; Dandapathak, M.; Sarkar, S.; Sarkar, B. C.

    2017-01-01

    We have studied the dynamics of two bilaterally-coupled non-oscillatory Rayleigh-Duffing oscillators (RDOs). With the increase of coupling factor (CF) between RDOs, birth of periodic oscillations observed. For increased values of CF, dynamics becomes chaotic through a quasi-periodicroute but for even higher CF, synchronized stable periodic oscillations in RDOs are found. Taking direct and anti-diffusive coupling cases into consideration, we derive conditions for periodic bifurcation in parameter space analytically and verified them through numerical solution of system equations. Numerical simulation is also used to predict system states in two parameter space involving CF and linear damping parameter of RDOs. It indicates non-oscillatory, periodic, quasi-periodic and chaotic zones of system dynamics. Qualitative explanation of the simulated dynamics is given using homoclinic perturbation theory. Hardware experiment is performed on analog circuits simulating RDO model and obtained results confirm the predictions regarding birth of periodic oscillation and other features of system dynamics. Experimental results examining onset of oscillations in two under-biased bi-laterally coupled X-band Gunn oscillators (which are modelled as RDOs) is presented in support of the analysis.

  4. Brain oscillatory activity during motor imagery in EEG-fMRI coregistration.

    PubMed

    Formaggio, Emanuela; Storti, Silvia Francesca; Cerini, Roberto; Fiaschi, Antonio; Manganotti, Paolo

    2010-12-01

    The purpose of the present work was to investigate the correlation between topographical changes in brain oscillatory activity and the blood oxygenation level-dependent (BOLD) signal during a motor imagery (MI) task using electroencephalography (EEG) and functional magnetic resonance imaging (fMRI) coregistration. EEG was recorded in 7 healthy subjects inside a 1.5 T MR scanner during the imagination of the kinesthetic experience of movement. A Fast Fourier Transform was applied to EEG signal in the rest and active conditions. We used the event-related-synchronization (ERS)/desynchronization (ERD) approach to characterize where the imagination of movement produces a decrease in alpha and beta power. The mean alpha map showed ERD decrease localized over the contralateral sensory motor area (SM1c) and a light desynchronization in the ipsilateral sensory motor area (SM1i); whereas the mean beta map showed ERD decrease over the supplementary motor area (SMA). fMRI showed significant activation in SMA, SM1c, SM1i. The correlation is negative in the contralateral side and positive in the ipsilateral side. Using combined EEG-fMRI signals we obtained useful new information on the description of the changes in oscillatory activity in alpha and beta bands during MI and on the investigation of the sites of BOLD activity as possible sources in generating these rhythms. By correlating BOLD and ERD/ERS we may identify more accurately which regions contribute to changes of the electrical response.

  5. Strobes: pyrotechnic compositions that show a curious oscillatory combustion.

    PubMed

    Corbel, Justine M L; van Lingen, Joost N J; Zevenbergen, John F; Gijzeman, Onno L J; Meijerink, Andries

    2013-01-02

    Strobes are pyrotechnic compositions which show an oscillatory combustion; a dark phase and a flash phase alternate periodically. The strobe effect has applications in various fields, most notably in the fireworks industry and in the military area. All strobe compositions mentioned in the literature were discovered by trial and error methods and the mechanisms involved remain unclear. Many