Microstructural indicators of convection in sills and dykes

NASA Astrophysics Data System (ADS)

Holness, Marian; Neufeld, Jerome; Gilbert, Andrew

2016-04-01

The question of whether or not magma convects is a vexed one, with some advocating vigorous convection in crustal magma chambers while others suggest that convection is weak and short-lived. From a detailed microstructural study of a range of tabular mafic intrusions, we argue that it is possible to determine whether crystallization took place predominantly in solidification fronts (i.e. the magma was essentially crystal-free) or whether crystals grew suspended in a convecting magma. The 168m thick Shiant Isles Main Sill is a composite body, dominated by a 140m thick unit with a 45m thick base rich in olivine phenocrysts (picrodolerite). The remainder of the unit contains only interstitial olivine. The average olivine grain size in the picrodolerite decreases upwards in the lowermost 10m, but then increases upwards. The coarsening-upwards sequence is marked by the onset of clustering of olivine grains. The extent to which these clusters are sintered, and the average cluster size, increase upwards. The coarsening-upwards sequence and the clustering are mirrored in a thinner (<10m) sequence at the roof. The fining-upwards sequence of non-clustered olivine formed by the rapid settling of incoming cargo crystals, while the coarsening-upwards sequence of clustered olivine represents post-emplacement growth of grains suspended in a convecting magma. The clusters grew by synneusis, with the extensive sintering pointing to the retention of the clusters in the convecting magma for a considerable time. The presence of large clusters at the intrusion roof can be reconciled with their high Stokes settling velocity if they were brought up in rapidly moving convective currents and entangled in the downwards-propagating solidification front. A further indication of convection is provided by plagioclase grain shape. During interface-controlled growth, plagioclase grows as well-facetted compact grains: these grains are platy in rapidly-cooled rocks and blocky in slowly-cooled rocks. In mafic sills, the average apparent aspect ratio (AR), as measured in thin-section, varies smoothly with model crystallization times (calculated assuming diffusive heat loss), consistent with in situ growth in solidification fronts. However, AR is invariant across individual mafic dykes, with decreasing values (i.e. more blocky grains) as the dyke width increases. This difference can be accounted for by the plagioclase in dykes growing as individual grains and clusters suspended in a convecting magma. Cooling at a vertical wall, as is the case for dykes, will always result in a gravitational convective instability, and therefore crystal-poor magma in dykes will always convect. As solidification proceeds, the increasing volume fraction of suspended crystals will eventually damp convection: the final stages of solidification occur in static crystal-rich magma, containing a well-mixed grain population. That the Shiant Isles Main Sill exhibits evidence for prolonged convection of sufficient vigour to suspend 5 mm olivine clusters, while other sills of comparable thickness contain plagioclase with grain shapes indicative of growth predominantly in solidification fronts, is most likely due to the composite nature of the Shiant. The 140m unit is underlain by 23m of picrite which intruded shortly before - this heat source would have acted as a strong driver for convection.

Hydrogeologic unit flow characterization using transition probability geostatistics.

PubMed

Jones, Norman L; Walker, Justin R; Carle, Steven F

2005-01-01

This paper describes a technique for applying the transition probability geostatistics method for stochastic simulation to a MODFLOW model. Transition probability geostatistics has some advantages over traditional indicator kriging methods including a simpler and more intuitive framework for interpreting geologic relationships and the ability to simulate juxtapositional tendencies such as fining upward sequences. The indicator arrays generated by the transition probability simulation are converted to layer elevation and thickness arrays for use with the new Hydrogeologic Unit Flow package in MODFLOW 2000. This makes it possible to preserve complex heterogeneity while using reasonably sized grids and/or grids with nonuniform cell thicknesses.

Paleographic and sedimentologic significance of Mississippian sequence at Mt. Darby, Wyoming

DOE Office of Scientific and Technical Information (OSTI.GOV)

Dejarnett, J.

1985-05-01

Mississippian strata at Mt. Darby comprise the Madison Group and the overlying Humbug Formation. This sequence, although initially transgressive, exhibits an overall regressive character produced by progradation of platform carbonates in response to sea level fluctuations related to Antler orogenic events. The Paine Member of the Lodgepole Limestone, the basal formation of the Madison Group, consists of relatively deep-water carbonates including a possible Waulsortian-type carbonate bank that accumulated on a Kinderhookian foreslope. At least five shoaling-upward grainstone cycles are recognizable in the Woodhurst Member of the Lodgepole Limestone. These cycles record Osagean deposition in shallow agitated environments that developed highmore » on a clinoform ramp. Shelf-margin and platform carbonates dominate the Mission Canyon Limestone, the upper formation of the Madison Group. this unit consists of two asymmetric deposition cycles, each with a thick regressive phase, capped by an evaporite solution breccia and an overlying thin transgressive phase. The Humbug Formation, a sequence of fine-grained carbonates and sandstones, represents part of a deltaic complex that developed offshore from the Meramecian karst plain. Humbug sediments were transported northward to the Mt. Darby area from the area of the present Uinta Mountains, or another deltaic system formed there. Deposition in the study area was apparently continuous upward from the Madison carbonates into the Humbug. The middle Meramecian shoreline trended northwest between the present locations of Mt. Darby and Haystack Peak.« less

Sequence stratigraphy, sedimentary systems and petroleum plays in a low-accommodation basin: Middle to upper members of the Lower Jurassic Sangonghe Formation, Central Junggar Basin, Northwestern China

NASA Astrophysics Data System (ADS)

Feng, Youliang; Jiang, Shu; Wang, Chunfang

2015-06-01

The Lower Jurassic Junggar Basin is a low-accommodation basin in northwestern China. Because of low subsidence rates and a warm, wet climate, deposits of the Central subbasin of the Junggar Basin formed from fluvial, deltaic, shallow lake facies. Sequence stratigraphy and sedimentary systems of the Lower Jurassic members of the Sangonghe Formation (J1s) were evaluated by observing cores, interpreting wireline logs and examining seismic profiles. Two third-order sequences were recognized in the strata. The distribution of the sedimentary systems in the systems tracts shows that tectonic movement, paleorelief, paleoclimate and changes in lake level controlled the architecture of individual sequences. During the development of the lowstand systems tract (LST), the intense structural movement of the basin resulted in a significant fall in the water level in the lake, accompanied by rapid accommodation decrease. Braided rivers and their deltaic systems were also developed in the Central Junggar Basin. Sediments carried by braided rivers were deposited on upward slopes of the paleorelief, and braid-delta fronts were deposited on downward slopes. During the transgressive systems tract (TST), the tectonic movement of the basin was quiescent and the climate was warm and humid. Lake levels rose and accommodation increased quickly, shoal lines moved landward, and shore- to shallow-lake deposits, sublacustrine fans and deep-lake facies were deposited in shallow- to deep-lake environments. During the highstand systems tract (HST), the accommodation no longer increased but sediment supply continued, far exceeding accommodation. HST deposits slowly formed in shallow-lake to meandering river delta-front environments. Relatively low rates of structural subsidence and low accommodation resulted in coarse-grained successions that were fining upward. Deposits were controlled by structural movement and paleorelief within the LST to TST deposits in the Central subbasin. Fine- to medium-grained coarsening-upward successions developed during the HST. The sand bodies of braid-delta fronts on the downward slopes of the paleorelief in the LST and the sublacustrine fans in the TST became reservoirs for hydrocarbon accumulation. Petroleum plays have only been found in the Sangonghe Formation (J1s) located on structural ridges that consist of sand bodies comprising these sequences. Favorable conditions for petroleum plays in HST1-LST2 occur where the sand bodies have been fractured by faults and sealed by denudation and pinch-out lines, then overlain by deep lake mudstone in TST2. The favorable condition of the sand bodies within TST2 occurs where isolated sand bodies have been fractured by faults.

Coastal evidence for Holocene subduction-zone earthquakes and tsunamis in central Chile

USGS Publications Warehouse

Dure, Tina; Cisternas, Marco; Horton, Benjamin; Ely, Lisa; Nelson, Alan R.; Wesson, Robert L.; Pilarczyk, Jessica

2015-01-01

The ∼500-year historical record of seismicity along the central Chile coast (30–34°S) is characterized by a series of ∼M 8.0–8.5 earthquakes followed by low tsunamis (<4 m) occurring on the megathrust about every 80 years. One exception is the AD 1730 great earthquake (M 9.0–9.5) and high tsunami (>10 m), but the frequency of such large events is unknown. We extend the seismic history of central Chile through a study of a lowland stratigraphic sequence along the metropolitan coast north of Valparaíso (33°S). At this site, higher relative sea level during the mid Holocene created a tidal marsh and the accommodation space necessary for sediment that preserves earthquake and tsunami evidence. Within this 2600-yr-long sequence, we traced six laterally continuous sand beds probably deposited by high tsunamis. Plant remains that underlie the sand beds were radiocarbon dated to 6200, 5600, 5000, 4400, 3800, and 3700 cal yr BP. Sediment properties and diatom assemblages of the sand beds—for example, anomalous marine planktonic diatoms and upward fining of silt-sized diatom valves—point to a marine sediment source and high-energy deposition. Grain-size analysis shows a strong similarity between inferred tsunami deposits and modern coastal sediment. Upward fining sequences characteristic of suspension deposition are present in five of the six sand beds. Despite the lack of significant lithologic changes between the sedimentary units under- and overlying tsunami deposits, we infer that the increase in freshwater siliceous microfossils in overlying units records coseismic uplift concurrent with the deposition of five of the sand beds. During our mid-Holocene window of evidence preservation, the mean recurrence interval of earthquakes and tsunamis is ∼500 years. Our findings imply that the frequency of historical earthquakes in central Chile is not representative of the greatest earthquakes and tsunamis that the central Chilean subduction zone has produced.

Terrace aggradation during the 1978 flood on Powder River, Montana, USA

USGS Publications Warehouse

Moody, J.A.; Meade, R.H.

2008-01-01

Flood processes no longer actively increase the planform area of terraces. Instead, lateral erosion decreases the area. However, infrequent extreme floods continue episodic aggradation of terraces surfaces. We quantify this type of evolution of terraces by an extreme flood in May 1978 on Powder River in southeastern Montana. Within an 89-km study reach of the river, we (1) determine a sediment budget for each geomorphic feature, (2) interpret the stratigraphy of the newly deposited sediment, and (3) discuss the essential role of vegetation in the depositional processes. Peak flood discharge was about 930??m3 s- 1, which lasted about eight??days. During this time, the flood transported 8.2??million tons of sediment into and 4.5??million tons out of the study reach. The masses of sediment transferred between features or eroded from one feature and redeposited on the same feature exceeded the mass transported out of the reach. The flood inundated the floodplain and some of the remnants of two terraces along the river. Lateral erosion decreased the planform area of the lower of the two terraces (~ 2.7??m above the riverbed) by 3.2% and that of the higher terrace (~ 3.5??m above the riverbed) by 4.1%. However, overbank aggradation, on average, raised the lower terrace by 0.16??m and the higher terrace by 0.063??m. Vegetation controlled the type, thickness, and stratigraphy of the aggradation on terrace surfaces. Two characteristic overbank deposits were common: coarsening-upward sequences and lee dunes. Grass caused the deposition of the coarsening-upward sequences, which had 0.02 to 0.07??m of mud at the base, and in some cases, the deposits coarsened upwards to coarse sand on the top. Lee dunes, composed of fine and very fine sand, were deposited in the wake zone downstream from the trees. The characteristic morphology of the dunes can be used to estimate some flood variables such as suspended-sediment particle size, minimum depth, and critical shear velocity. Information about depositional processes during extreme floods is rare, and therefore, the results from this study aid in interpreting the record of terrace stratigraphy along other rivers.

Reconstruction of the Paleoproterozoic deeper ocean environment: Preliminary Report of the Ghana Birimian Greenstone Belt Drilling Project (GHB)

NASA Astrophysics Data System (ADS)

Kiyokawa, S.; Yoshimaru, S.; Miki, T.; Sakai, S.; Ikehara, M.; Yamaguchi, K. E.; Ito, T.; Onoue, T.; Takehara, M.; Tetteh, G. M.; Nyame, F. K.

2016-12-01

The Paleoproterozoic Era are one of the most rapid environmental change when the earth surface environment was affected by formation of continents and increasing atmospheric oxygen levels. Major oxidation of Great Oxidation Event (GOE) are reported this ages (eg. Holland, 2006; Condie, 2001; Lyons et al., 2014). The nature of deep sea environments at this time have not been clearly identified and oceanic sediments are mostly involved in subduction. The Paleoproterozoic Birimian Greenstone Belt is an ophiolitic volcaniclastic sequence in Ghana, with depositional age of over 2.3-2.2 Ga (Petersson et al., 2016). Detail research was conducted of the Ashanti (Axim-Konongo) Belt of the Birimian Greenstone Belt along the coast near Cape Three Points area. Very thick volcaniclastic and organic-rich sedimentary rocks, which we now refer to as the Cape Three Points Group, crop out in the lower part of the Birimian Greenstone Belt. Stratigraphically, three unit identified; the lower portion contains thick vesicular volcaniclastic rocks, the middle portion is made up of laminated volcaniclastics and black shale, and the upper portion dominated by fine laminated volcaniclastics with more black shale sequence. Continuous core drilling from Dec 3-12th 2015 of the upper part of the sequence intersected saprolite to a depth of 30m and fresh, well preserved stratigraphy with graded bedding and lamination to a depth of 195m. Half cut cores show well laminated organic rich black shale and relative carbonate rich layers with very fine pyrite grains. SHRIMP age data from a porphyry intrusion into this sequence indicate an age of 2250 Ma. Carbon isotope analysis shows δ13C = -43 to -37‰ for black shale with the very light isotope values for cyanobacterial signature.The fining-upward sequences, well laminated bed and black shales and REE data suggest this sequence situated partly silent stagnant with volcanic activity ocean floor environment around an oceanic island arc condition.

Fluvial sandstone reservoirs of Travis Peak (Hosston) Formation, east Texas basin

DOE Office of Scientific and Technical Information (OSTI.GOV)

Tye, R.S.

1989-03-01

Gas production (7.2 billion ft/sup 3/) from low-permeability sandstones in the Travis Peak Formation, North Appleby field, Nacogdoches County, Texas, is enhanced through massive hydraulic fracturing of stacked sandstones that occur at depths between 8000 and 10,000 ft. stratigraphic reservoirs were formed in multilateral tabular sandstones owing to impermeable mudstone interbeds that encase blocky to upward-fining sandstones. Pervasive quartz cement in the sandstones decreases porosity and permeability and augments the reservoir seal. Subsurface data indicate that much of this 2000-ft thick section represents aggradation of alluvial-valley deposits. Multiple channel belts form a network of overlapping, broad, tabular sandstones having thickness-to-widthmore » ratios of 1:850 (8-44 ft thick; widths exceed 4-5 mi). Six to eight channel belts, each containing 80-90% medium to fine-grained sandstone, can occupy a 200-ft thick interval. In a vertical sequence through one channel belt sandstone, basal planar cross-bedding grades upward into thinly interbedded sets of planar cross-beds and ripple cross-lamination. Clay-clast conglomerates line scoured channel bases. Adjacent to the channels, interbedded mudstones accumulated in well-drained swamps and lakes. Poorly sorted sandstones represent overbank deposition (crevasse splays and lacustrine deltas). During Travis Peak deposition, fluvial styles evolved from dominantly braided systems near the base of the formation to more mud-rich, meandering systems at the top.« less

Repeated sedimentation and exposure of glacial Lake Missoula sediments: A lake-level history at Garden Gulch, Montana, USA

NASA Astrophysics Data System (ADS)

Smith, Larry N.

2017-01-01

Glaciolacustrine sediments record lake transgression, regression, and subaerial modification of the silty lake-bottom of glacial Lake Missoula in the Clark Fork River valley. The sequence preserved at Garden Gulch, MT documents lake-level fluctuations at >65% of its full-pool volume. Twelve sedimentary cycles fine upwards from (1) very fine-grained sandy silt to (2) silt with climbing ripples to (3) rhythmically laminated silt and some clay. The cycles are fine-grained turbidites capped locally by thin layers of angular gravel derived from local bedrock outcrops. The gravels appear to be the toes of mass wasting lobes carried onto the exposed lakebed surface during repeated lake-level lowerings. Periglacial wedges, small rotational faults, involutions, and clastic dikes deform the tops of eleven cycles. The wedges are 10-30 cm wide, penetrate 30-70 cm deep, are spaced <1 m apart, and contain vertically oriented gravel and massive to laminated sediment. Wedges split and taper in plan view. A few thin silt-filled dikes, which branch and taper downwards from wedges, are interpreted as filled frost cracks. One 10-20 cm-wide sand-filled dike protrudes upward from a sand bed; it is interpreted as a liquefaction feature consistent with a filling and draining lake. The deformed cycle tops preserve evidence of periglacial cold, subaerial exposure, seasonal frost heave, and the incipient formation of sorted polygons. The lowest five cycles are thicker and display more periglacial modification at their tops than the upper seven cycles. The Garden Gulch section may represent as few as seven and as many as twelve substantial fillings and partial to complete drainings of glacial Lake Missoula.

Characterization of geologic deposits in the vicinity of US Ecology, Amargosa Basin, southern Nevada

USGS Publications Warehouse

Taylor, Emily M.

2010-01-01

Multiple approaches have been applied to better understand the characteristics of geologic units exposed at the surface and buried at depth in the vicinity of US Ecology (USE), a low-level commercial waste site in the northern Amargosa Desert, Nevada. Techniques include surficial geologic mapping and interpretation of the subsurface using borehole data. Dated deposits at depth were used to estimate rates of sediment accumulation. The subsurface lithologies have been modeled in three dimensions. Lithologic cross sections have been created from the three-dimensional model and have been compared to resistivity data at the same location. Where deposits appear offset, a fault was suspected. Global Positioning System elevation transects were measured and trenches were excavated to locate a strand of the Carrara Fault. The presence of the fault helps to better understand the shape of the potentiometric surface. These data will be used to better understand the hydrologic parameters controlling the containment of the waste at US Ecology.Quaternary geologic units exposed at the surface, in the vicinity of US Ecology, are derived from the alluvium shed off the adjacent range front and the Amargosa River. These deposits vary from modern to early Pleistocene in age. At depth, heterogeneous sands and gravel occur. Observed in deep trenches and boreholes, the subsurface deposits are characterized as fining-upward sequence of sediment from 5- to 8-meters thick. No volcanic units or fine-grained playa deposits were described in the boreholes to a depth of 200 meters. Based on Infrared Stimulated Luminescence dated core samples, short-term rates of sediment accumulation (<70,000 years) are an average of 2.7 millimeters per year, however, long-term rates (<3,900,000 years) are orders of magnitude less. Resistivity data, when compared to lithologic cross sections, generally are consistent with lithology grain size and probable soil carbonate accumulations. Surface resistivity displays a fining-upward sequence of sediments at the surface with a soil carbonate imprint. Finally, trenching north of US Ecology successfully exposed offset Quaternary deposits on a splay of the Carrara Fault. Holocene deposits do not appear to be faulted, however, a fault zone does intersect middle and late Pleistocene aged units.

Facies analysis and depositional environments of upper part of Richmond group (upper Ordovician), Richmond, Indiana, to Xenia, Ohio

DOE Office of Scientific and Technical Information (OSTI.GOV)

Betz, C.E.; Martin, W.D.

Rock sections of the Drakes, Elkhorn, and Whitewater Formations were studied along an east-west-trending line in order to distinguish facies changes in a slope direction across the paleodepositional basin. The Richmond limestones, shales, and dolostones formed from fine-grained, terrigenous and carbonate sediments deposited on a shallow marine ramp within the humid, tropical, low latitudes of the Southern Hemisphere. Depositional environments on the ramp are represented by five main facies type. The five Richmond facies form a subtidal to supratidal shallowing-upward sequence. This progressive shallowing during the Late Ordovician resulted from the westward regional progradation of Queenston deltaic facies.

Preliminary results in larger benthic foraminifera assemblage in a mixed siliciclastic-carbonate platform from the Upper Cretaceous of the External Prebetic Domain (Valencia province, SE Spain)

NASA Astrophysics Data System (ADS)

Robles-Salcedo, Raquel; Vicedo, Vicent

2016-04-01

In the External Prebetic Domain (Betic Mountain Range, Valencia province, SE Spain) it is difficult to find good outcrops to study larger benthic foraminifera (LBF), particularly in the Upper Cretaceous deposits, because of three main reasons. During the Upper Cretaceous, the complex paleogeography in the northern Prebetic Domain developed a complex system of shallow-water platforms. This is directly linked to the complexity in the distribution of the facies observed nowadays, which may change drastically in lateral, closely related outcrops having a special negative impact in the lateral extension of stratigraphical levels containing LBF. The second reason is the nature of the shallow water environments in which the larger foraminifera lived. The local continental influence derived in the establishment of very complex mixed platforms. Thus, there is not a complete register through carbonate rocks, but an alternation of microconglomerates, sandstones, calcarenites and carbonates that can be observed in the stratigraphic series of the Upper Cretaceous. This affects negatively in observing changes in the evolutionary trends of taxa. The third reason difficulting the study of LBF in northern localities of the Prebetic Domain is diagenetic. Dolomitization affects a huge part of the Mesozoic rocks deleting all fossil microfauna in the affected rocks. Such three reasons are behind the difficulty in developing correlations and having a comprehensive understanding of the biostratigraphy and phylogeny of the taxa involved. However, after several field trips developed in the northern Prebetic area, an excellent reference section for the study of the LBF in the Prebetic Domain has been identified in the surroundings of the Pinet village (Valencia province). Here, a relatively continuous section with scarce dolomitization and good conditions of accessibility exists. The larger foraminifera assemblages appering in the Pinet section will be compared with other paleobiogeographic areas such as the Pyrenees (S France and NE Spain) or Salento (SE Italy) regions. The Pinet section measures about 150 m, with coarsening upward sequences consisting, from bottom to top: 56 m of fine sandstones; 25 m with several coarsening upward, well-stratified limestones; 36 m with fine to coarse dolomitic sandstones intercalated with calcarenites; 15 m with fine and well-stratified limestones and, 20 m of dolomitic massive limestone at the top. Finally, the stratigraphical succession is completed by continental deposits. An abundant content of lamellar-perforate foraminifera (siderolitids, orbitoidiforms, clypeorbids) and agglutinated foraminifera (dicyclinids) has been identified in the preliminary studies. From bottom to top, in the fine sandstone deposits abundant specimens identified as Praesiderolites sp. occur. The coarsening upward limestones provide Praesiderolites sp., Pseudosiderolites sp., "Orbitoides" cf. concavatus, Orbitoides spp., Lepidorbitoides campaniensis and Sirtina cf. orbitoidiformis. The calcaretinic deposits contain rounded bioclastic fauna with Orbitoides spp. and cf. Wannierina. The fine limestones display abundant ostracods, miliolids and Dicyclina sp. and there are wackestone limestones deposits with carophytes at the top of the sequence. No larger benthic foraminifera have been identified in the massive dolomitic limestone. The results obtained after a first analysis, considering the LBF assemblage, indicate that the Pinet section deposits can be dated as earliest to middle Late Campanian, contrarily to the Campanian-Maastrichtian age suggested by previous studies.

Architecture and reservoir quality of low-permeable Eocene lacustrine turbidite sandstone from the Dongying Depression, East China

NASA Astrophysics Data System (ADS)

Munawar, Muhammad Jawad; Lin, Chengyan; Chunmei, Dong; Zhang, Xianguo; Zhao, Haiyan; Xiao, Shuming; Azeem, Tahir; Zahid, Muhammad Aleem; Ma, Cunfei

2018-05-01

The architecture and quality of lacustrine turbidites that act as petroleum reservoirs are less well documented. Reservoir architecture and multiscale heterogeneity in turbidites represent serious challenges to production performance. Additionally, establishing a hierarchy profile to delineate heterogeneity is a challenging task in lacustrine turbidite deposits. Here, we report on the turbidites in the middle third member of the Eocene Shahejie Formation (Es3), which was deposited during extensive Middle to Late Eocene rifting in the Dongying Depression. Seismic records, wireline log responses, and core observations were integrated to describe the reservoir heterogeneity by delineating the architectural elements, sequence stratigraphic framework and lithofacies assemblage. A petrographic approach was adopted to constrain microscopic heterogeneity using an optical microscope, routine core analyses and X-ray diffraction (XRD) analyses. The Es3m member is interpreted as a sequence set composed of four composite sequences: CS1, CS2, CS3 and CS4. A total of forty-five sequences were identified within these four composite sequences. Sand bodies were mainly deposited as channels, levees, overbank splays, lobes and lobe fringes. The combination of fining-upward and coarsening-upward lithofacies patterns in the architectural elements produces highly complex composite flow units. Microscopic heterogeneity is produced by diagenetic alteration processes (i.e., feldspar dissolution, authigenic clay formation and quartz cementation). The widespread kaolinization of feldspar and mobilization of materials enhanced the quality of the reservoir by producing secondary enlarged pores. In contrast, the formation of pore-filling authigenic illite and illite/smectite clays reduced its permeability. Recovery rates are higher in the axial areas and smaller in the marginal areas of architectural elements. This study represents a significant insight into the reservoir architecture and heterogeneity of lacustrine turbidites, and the understanding of compartmentalization and distribution of high-quality sand reservoirs can be applied to improve primary and secondary production in these fields.

Hydrogeologic Unit Flow Characterization Using Transition Probability Geostatistics

DOE Office of Scientific and Technical Information (OSTI.GOV)

Jones, N L; Walker, J R; Carle, S F

2003-11-21

This paper describes a technique for applying the transition probability geostatistics method for stochastic simulation to a MODFLOW model. Transition probability geostatistics has several advantages over traditional indicator kriging methods including a simpler and more intuitive framework for interpreting geologic relationships and the ability to simulate juxtapositional tendencies such as fining upwards sequences. The indicator arrays generated by the transition probability simulation are converted to layer elevation and thickness arrays for use with the new Hydrogeologic Unit Flow (HUF) package in MODFLOW 2000. This makes it possible to preserve complex heterogeneity while using reasonably sized grids. An application of themore » technique involving probabilistic capture zone delineation for the Aberjona Aquifer in Woburn, Ma. is included.« less

Downstream lightening and upward heavying, sorting of sediments of uniform grain size but differing in density

NASA Astrophysics Data System (ADS)

Viparelli, E.; Solari, L.; Hill, K. M.

2014-12-01

Downstream fining, i.e. the tendency for a gradual decrease in grain size in the downstream direction, has been observed and studied in alluvial rivers and in laboratory flumes. Laboratory experiments and field observations show that the vertical sorting pattern over a small Gilbert delta front is characterized by an upward fining profile, with preferential deposition of coarse particles in the lowermost part of the deposit. The present work is an attempt to answer the following questions. Are there analogous sorting patterns in mixtures of sediment particles having the same grain size but differing density? To investigate this, we performed experiments at the Hydrosystems Laboratory at the University of Illinois at Urbana-Champaign. During the experiments a Gilbert delta formed and migrated downstream allowing for the study of transport and sorting processes on the surface and within the deposit. The experimental results show 1) preferential deposition of heavy particles in the upstream part of the deposit associated with a pattern of "downstream lightening"; and 2) a vertical sorting pattern over the delta front characterized by a pattern of "upward heavying" with preferential deposition of light particles in the lowermost part of the deposit. The observed downstream lightening is analogous of the downstream fining with preferential deposition of heavy (coarse) particles in the upstream part of the deposit. The observed upward heavying was unexpected because, considering the particle mass alone, the heavy (coarse) particles should have been preferentially deposited in the lowermost part of the deposit. Further, the application of classical fractional bedload transport relations suggests that in the case of mixtures of particles of uniform size and different densities equal mobility is not approached. We hypothesize that granular physics mechanisms traditionally associated with sheared granular flows may be responsible for the observed upward heavying and for the deviation from equal mobility.

Hydrodynamic implications of textural trends in sand deposits of the 2004 tsunami in Sri Lanka

USGS Publications Warehouse

Morton, R.A.; Goff, J.R.; Nichol, S.L.

2008-01-01

Field observations and sediment samples at a coastal-plain setting in southeastern Sri Lanka were used to document the erosional and depositional impacts of the 2004 Indian Ocean tsunami and to interpret the hydrodynamic processes that produced an extensive sand-sheet deposit. Tsunami deposit thicknesses ranged from 6 to 22??cm with thickness being controlled partly by antecedent topography. The deposit was composed of coarse to medium sand organized into plane-parallel laminae and a few laminasets. Vertical textural trends showed an overall but non-systematic upward fining and upward thinning of depositional units with an upward increase in heavy-mineral laminations at some locations. Repeated patterns in the vertical textural trends (upward fining, upward coarsening, uniform) were used to subdivide and correlate the deposit into five hydro-textural stratigraphic units. The depositional units were linked to hydrodynamic processes and upcurrent conditions, such as rates of sediment supply and composition of the sediment sources. Vertical changes in grain-size distributions recorded the depositional phases associated with flow acceleration, initial unsteady pulsating flow, relatively stable and uniform flow, flow deceleration, slack water, and return flow or flow redirection. Study results suggest that vertical textural trends from multiple cross-shore sections can be used to interpret complex tsunami flow histories, but at the location examined, interpretation of the lateral textural trends did not provide a basis for identifying the correct sediment transport pathways because flow near the landward boundary was multidirectional.

Sedimentology of SPICE (Steptoean positive carbon isotope excursion): A high-resolution trace fossil and microfabric analysis of the middle to late Cambrian Alum Shale Formation, southern Sweden

USGS Publications Warehouse

Egenhoff, Sven; Fishman, Neil; Ahlberg, Per; Maletz, Jorg; Jackson, Allison; Kolte, Ketki; Lowers, Heather; Mackie, James; Newby, Warren; Petrowsky, Matthew

2015-01-01

The Cambrian Alum Shale Formation in the Andrarum-3 core from Scania, southern Sweden, consists of black siliciclastic mudstone with minor carbonate intercalations. Four facies comprise three siliciclastic mudstones and one fine-grained carbonate. The facies reflect deposition along a transect from deep ramp to basin on a Cambrian shelf. The three mudstone facies contain abundant clay clasts and laterally variable siltstone laminae. Bed-load transport processes seem to have dominated deposition on this deep shelf. These sedimentary rocks record mainly event deposition, and only relatively few, thin laminae probably resulted from suspension settling. The Alum Shale Formation deep shelf did not show a bioturbation gradient, but fecal strings are common and Planolites burrows are rare in all mudstone facies. Evidence for biotic colonization indicates that this mudstone environment was not persistently anoxic, but rather was most likely intermittently dysoxic. The Alum Shale Formation in the Andrarum-3 core shows an overall decrease of grain size, preserved energy indicators, and carbonate content upsection interpreted to reflect a deepening upward. The succession can also be divided into four small-scale fining-upward cycles that represent deepening, and four overlying coarsening-upward cycles that represent upward shallowing.

Glutenite bodies sequence division of the upper Es4 in northern Minfeng zone of Dongying Sag, Bohai Bay Basin, China

NASA Astrophysics Data System (ADS)

Shao, Xupeng

2017-04-01

Glutenite bodies are widely developed in northern Minfeng zone of Dongying Sag. Their litho-electric relationship is not clear. In addition, as the conventional sequence stratigraphic research method drawbacks of involving too many subjective human factors, it has limited deepening of the regional sequence stratigraphic research. The wavelet transform technique based on logging data and the time-frequency analysis technique based on seismic data have advantages of dividing sequence stratigraphy quantitatively comparing with the conventional methods. Under the basis of the conventional sequence research method, this paper used the above techniques to divide the fourth-order sequence of the upper Es4 in northern Minfeng zone of Dongying Sag. The research shows that the wavelet transform technique based on logging data and the time-frequency analysis technique based on seismic data are essentially consistent, both of which divide sequence stratigraphy quantitatively in the frequency domain; wavelet transform technique has high resolutions. It is suitable for areas with wells. The seismic time-frequency analysis technique has wide applicability, but a low resolution. Both of the techniques should be combined; the upper Es4 in northern Minfeng zone of Dongying Sag is a complete set of third-order sequence, which can be further subdivided into 5 fourth-order sequences that has the depositional characteristics of fine-upward sequence in granularity. Key words: Dongying sag, northern Minfeng zone, wavelet transform technique, time-frequency analysis technique ,the upper Es4, sequence stratigraphy

Tectonic and climatic controls on continental depositional facies in the Karoo Basin of northern Natal, South Africa

NASA Astrophysics Data System (ADS)

Turner, Brian R.

1986-02-01

The eastern Karoo Basin, South Africa, contains a thick sequence of terrigenous clastic sediments comprising a meanderbelt facies, braided channel facies divided into coarse and fine subfacies, fluviolacustrine facies and aeolian facies. Depositional trends and changes in fluvial style reflect a progressive increase in aridity of the climate under stable tectonic conditions, interrupted by two phases of source area tectonism and the development of fine and coarse clastic wedges of the braided channel subfacies; the latter signifying a short interlude of cool, wet conditions. The fine braided channel subfacies occurs in the upper part of the meanderbelt facies, which was deposited by ephemeral, meandering mixed-load streams of variable discharge and sinuosity, under dry, semi-arid climatic conditions. These deposited complex, internally discordant channel sands and well-developed levee deposits. Following deposition of the coarse braided channel subfacies semi-arid conditions returned and fluvial deposition was dominated by ephemeral, straight to slightly sinuous mixed load streams characterised by simple channel sand bodies. As the aridity of the climate increased, the streams became more localised and carried an increasing proportion of fines. Interbedded with and overlying the fluvial deposits is a mudstone-dominated lacustrine sequence grading up into aeolian sands suggesting a playa lake-type situation. The general absence of evaporites from these sediments is attributed to the fresh nature of the lake waters, as evidenced by the freshwater aquatic organisms and clay-mineral suite, the lack of adequate inflow for solute accumulation and the removal of dust impregnated by salts from the surface of the dry lake bed during the dry season by superheated, upward-spiralling columns of air. Broadly similar environments to the fluvio-lacustrine and aeolian facies sequence are to be found in the Lake Eyre Basin of central Australia and the Okavango "delta" of northern Botswana. The Okavango "delta" model has an important bearing on patterns of fluvial sedimentation in arid regions since it shows many characteristics of temperate, well-vegetated anastomosed fluvial systems despite its location in the Kalahari Desert.

First results of the palaeogeographical research in Limyra and its environs (SW-Turkey)

NASA Astrophysics Data System (ADS)

Stock, Friederieke; Uncu, Levent; Seyer, Martin; Brückner, Helmut

2017-04-01

Geoarchaeological research in and around ancient cities of Asia Minor is an important tool for reconstructing the palaeogeography of their environs. An intensive geoarchaeological research project has started 2015 in the framework of a cooperation between the Austrian Archaeological Institute (ÖAI) and the University of Cologne (Brückner et al., 2016). 21 sediment cores were carried out in the ancient city of Limyra and its environs since 2015 and analysed with a multi-proxy approach (geochemical, sedimentological and microfaunal methods). The main goals of the project are to reconstruct (i) the environment, especially during the Classical to Late Roman periods; (ii) the geohydrological situation; (iii) the thickness of the settlement layers; (iv) the maximum extension of the former lake; to reveal (vi) the earthquake chronology and (vii) the spatio-temporal shifts in the coastline. First results show that the middle and eastern part of the city had been built on top of former lake sediments. Peat layers (so-called "floating peats") are intercalated and represent the starting siltation process. The reactivated lake phases, expressed in the rapid transitions from peat to lake strata, may be explained by earthquakes with co-seismic subsidence. Then follow fluvial sands with a fining-upward sequence (gravel at the base, overlain sands and alluvia). The strata provide information about shifting river channels. Anthropogenic layers form the top part of the core; they partly consolidated a swampy environment (core-filling limestone layers). In drill cores located between the eastern and the western city, pebbles and edged stones with artifacts follow on top of lake sediments and sands (littoral). The stones seem to have been intentionally deposited; people may have settled at the lake shore. The peat layer on top may represent the changing hydrology and co-seismic subsidence. The drill cores outside the city area confirm the sediment sequence: on top of limnic follow by a fluvial facies (fining-upward sequence, sands, alluvium). Lim 20, carried out close to the present coast reveals homogenous sands overlying the fluvial ones. The stratigraphy most likely represents the uppermost layers of a beach barrier which is overlain by dunes. Thus, the explanation that the origin of the lake was a lagoon is the most probable one.

Attachment process in rocket-triggered lightning strokes

NASA Astrophysics Data System (ADS)

Wang, D.; Rakov, V. A.; Uman, M. A.; Takagi, N.; Watanabe, T.; Crawford, D. E.; Rambo, K. J.; Schnetzer, G. H.; Fisher, R. J.; Kawasaki, Z.-I.

1999-01-01

In order to study the lightning attachment process, we have obtained highly resolved (about 100 ns time resolution and about 3.6 m spatial resolution) optical images, electric field measurements, and channel-base current recordings for two dart leader/return-stroke sequences in two lightning flashes triggered using the rocket-and-wire technique at Camp Blanding, Florida. One of these two sequences exhibited an optically discernible upward-propagating discharge that occurred in response to the approaching downward-moving dart leader and connected to this descending leader. This observation provides the first direct evidence of the occurrence of upward connecting discharges in triggered lightning strokes, these strokes being similar to subsequent strokes in natural lightning. The observed upward connecting discharge had a light intensity one order of magnitude lower than its associated downward dart leader, a length of 7-11 m, and a duration of several hundred nanoseconds. The speed of the upward connecting discharge was estimated to be about 2 × 107 m/s, which is comparable to that of the downward dart leader. In both dart leader/return-stroke sequences studied, the return stroke was inferred to start at the point of junction between the downward dart leader and the upward connecting discharge and to propagate in both upward and downward directions. This latter inference provides indirect evidence of the occurrence of upward connecting discharges in both dart leader/return-stroke sequences even though one of these sequences did not have a discernible optical image of such a discharge. The length of the upward connecting discharges (observed in one case and inferred from the height of the return-stroke starting point in the other case) is greater for the event that is characterized by the larger leader electric field change and the higher return-stroke peak current. For the two dart leader/return-stroke sequences studied, the upward connecting discharge lengths are estimated to be 7-11 m and 4-7 m, with the corresponding return-stroke peak currents being 21 kA and 12 kA, and the corresponding leader electric field changes 30 m from the rocket launcher being 56 kV/m and 43 kV/m. Additionally, we note that the downward dart leader light pulse generally exhibits little variation in its 10-90% risetime and peak value over some tens of meters above the return-stroke starting point, while the following return-stroke light pulse shows an appreciable increase in risetime and a decrease in peak value while traversing the same section of the lightning channel. Our findings regarding (1) the initially bidirectional development of return-stroke process and (2) the relatively strong attenuation of the upward moving return-stroke light (and by inference current) pulse over the first some tens of meters of the channel may have important implications for return-stroke modeling.

Lateral trends and vertical sequences in estuarine sediments, Willapa Bay, Washington

USGS Publications Warehouse

Clifton, H. Edward; Phillips, L.

1980-01-01

Willapa Bay is a sizable estuary on the southern coast of Washington- Relatively unmodified in a geologic sense by human activity the bay provides an excellent example of modern depositional facies in an estuarine setting. Studies of these deposits indicate that consistent lateral trends exist in sediment texture and sedimentary structures. The texture changes from sandy at the mouth of the bay to muddy in its upper parts. In any part of the bay , sediment is coarsest in the channel bottoms, where lag deposits accumulate. The sediment tends to fine in an upslope direction and is finest in supratidal flat deposits of silt and clay. The nature of sedimentary structures depends on the combination of physical and biological processes and sediment textures. Bedforms exist wherever the bed is sandy. In the main tidal channels sandwaves and dunes up to 4 meters high occur. In tributary channels and at the margins of the main channel, at shallower depths and under less intense currents , the structures are generally less than a meter high. Current ripples occur in t he sandy bed of all of the tidal channels and in runoff channels cross the tidal flat. Symmetric long-crested ripples are produced by wave action over the sandy intertidal flat. Internal structures in the bay's sediment depend not only on the nature of the bedform but also on the rate of bioturbation relative to physical processes. Under fields of large sandwaves or dunes, medium- to large-scale tabular and trough crossbedding predominates. This crossbedding generally is unidirectional, reflecting the locally dominant current (ebb or flood). Ripple bedding predominates elsewhere in sandy sediment within the channels. Where sand transport is diminished, as on the floor of the upper tributary channels, bioturbation exceeds the rate of production of physical structures and bedding is destroyed. The depositional banks in such areas tend to be sites of rapid sediment accumulation and bedding in the form of interlayered sand (commonly ripple bedded) and mud persists. On intertidal flats the sediment accumulates slowly and bioturbation erases nearly all physical structures. Bedding is preserved only where deposition is locally rapid , as in topographic depressions or on the depositional banks of runoff channels, or where faunal activity is inhibited, as beneath mounds of blue-green algae. The rate of sedimentation is slower still on the supratidal flats, but the general paucity of faunal activity allows the preservation of thin alternations of fine sand , silt or clay. The lateral migration of the tidal channels produces vertical sequences in which topographically higher facies are superposed on one another. Near the mouth of the estuary the upward sequence: lag deposit — crossbedded sand — ripple or planar-bedded sand is typical. The crossbedding shows a general upward decrease in thickness and a progression from trough to tabular units. In the main tidal channel - in the central estuary and in sandy tributary channels, the typical vertical sequence resembles that near the mouth , with the exception that the sequence is capped by bioturbated sandy or muddy tide flat deposits. In the upper estuary , where muddy sediment predominates, a typical sequence shows the progression-. bioturbated lag deposit — gently dipping interlaminated sand and mud layers of the accretionary bank — bioturbated mud flat deposits — thinly laminated fine supratidal deposits.

Treeline advances and associated shifts in the ground vegetation alter fine root dynamics and mycelia production in the South and Polar Urals.

PubMed

Solly, Emily F; Djukic, Ika; Moiseev, Pavel A; Andreyashkina, Nelly I; Devi, Nadezhda M; Göransson, Hans; Mazepa, Valeriy S; Shiyatov, Stepan G; Trubina, Marina R; Schweingruber, Fritz H; Wilmking, Martin; Hagedorn, Frank

2017-02-01

Climate warming is shifting the elevational boundary between forests and tundra upwards, but the related belowground responses are poorly understood. In the pristine South and Polar Urals with shifts of the treeline ecotone documented by historical photographs, we investigated fine root dynamics and production of extramatrical mycorrhizal mycelia (EMM) along four elevational transects reaching from the closed forest to the treeless tundra. In addition, we analysed elevational differences in climate and vegetation structure, and excavated trees to estimate related changes in the partitioning between below- and aboveground biomass. Fine root biomass of trees (<2 mm) increased by 13-79% with elevation, paralleled by a 35-72% increase in ground vegetation fine roots from the closed forest to the tundra. During the first year of decomposition, mass loss of fine root litter from different vegetation types was greater at lower elevations in the forest-tundra ecotone. The ratio between fine roots of trees and stem biomass largely increased with elevation in both regions, but these increases were not accompanied by a distinct production of EMM. Production of EMM, however, increased with the presence of ectomycorrhizal trees at the transition from the tundra to the forest. Our results imply that the recorded upward expansion of forest into former tundra in the Ural Mountains by 4-8 m per decade is decreasing the partitioning of plant biomass to fine roots. They further suggest that climate-driven forest advances will alter EMM production rates with potential feedbacks on soil carbon and nutrient cycling in these ecosystems.

The effects of sea level and palaeotopography on lithofacies distribution and geometries in heterozoan carbonates, south-eastern Spain

USGS Publications Warehouse

Johnson, C.L.; Franseen, E.K.; Goldstein, R.H.

2005-01-01

This study utilized three-dimensional exposures to evaluate how sea-level position and palaeotopography control the facies and geometries of heterozoan carbonates. Heterozoan carbonates were deposited on top of a Neogene volcanic substrate characterized by palaeotopographic highs, palaeovalleys, and straits that were formed by subaerial erosion, possibly original volcanic topography, and faults prior to carbonate deposition. The depositional sequence that is the focus of this study (DS1B) consists of 7-10 fining upward cycles that developed in response to relative sea-level fluctuations. A complete cycle has a basal erosion surface overlain by deposits of debrisflows and high-density turbidity currents, which formed during relative sea-level fall. Overlying tractive deposits most likely formed during the lowest relative position of sea level. Overlying these are debrites grading upward to high-density turbidites and low-density turbidites that formed during relative sea-level rise. The tops of the cycles consist of hemipelagic deposits that formed during the highest relative position of sea level. The cycles fine upward because upslope carbonate production decreased as relative sea level rose due to less surface area available for shallow-water carbonate production and partial drowning of substrates. The cycles are dominated by two end-member types of facies associations and stratal geometries that formed in response to fluctuating sea-level position over variable substrate palaeotopography. One end-member is termed 'flank flow cycle' because this type of cycle indicates dominant sediment transport down the flanks of palaeovalleys. Those cycles drape the substrate, have more debrites, high-density turbidites and erosion on palaeovalley flanks, and in general, the lithofacies fine down the palaeovalley flanks into the palaeovalley axes. The second end-member is termed 'axial flow cycle' because it indicates a dominance of sediment transport down the axes of palaeovalleys. Those cycles are characterized by debrites and high-density turbidites in palaeovalley axes, and lap out of strata against the flanks of palaeovalleys. Where and when an axial flow cycle or flank flow cycle developed appears to be related to the intersection of sea level with areas of gentle or steep substrate slopes, during an overall relative rise in sea level. Results from this study provide a model for similar systems that must combine carbonate principles for sediment production, palaeotopographic controls, and physical principles of sediment remobilization into deep water. ?? 2005 International Association of Sedimentologists.

The timing of sediment transport down Monterey Submarine Canyon, offshore California

USGS Publications Warehouse

Stevens, Thomas; Paull, Charles K.; Ussler, William III; McGann, Mary; Buylaert, Jan-Pieter; Lundsten, Eve M.

2013-01-01

While submarine canyons are the major conduits through which sediments are transported from the continents out into the deep sea, the time it takes for sediment to pass down through a submarine canyon system is poorly constrained. Here we report on the first study to couple optically stimulated luminescence (OSL) ages of quartz sand deposits and accelerator mass spectrometry 14C ages measured on benthic foraminifera to examine the timing of sediment transport through the axial channel of Monterey Submarine Canyon and Fan, offshore California. The OSL ages date the timing of sediment entry into the canyon head while the 14C ages of benthic foraminifera record the deposition of hemipelagic sediments that bound the sand horizons. We use both single-grain and small (∼2 mm area) single-aliquot regeneration approaches on vibracore samples from fining-upward sequences at various water depths to demonstrate relatively rapid, decadal-scale sand transport to at least 1.1 km depth and more variable decadal- to millennial-scale transport to a least 3.5 km depth on the fan. Significant differences between the time sand was last exposed at the canyon head (OSL age) and the timing of deposition of the sand (from 14C ages of benthic foraminifera in bracketing hemipelagic sediments) are interpreted as indicating that the sand does not pass through the entire canyon instantly in large individual events, but rather moves multiple times before emerging onto the fan. The increased spread in single-grain OSL dates with water depth provides evidence of mixing and temporary storage of sediment as it moves through the canyon system. The ages also indicate that the frequency of sediment transport events decreases with distance down the canyon channel system. The amalgamated sands near the canyon head yield OSL ages that are consistent with a sub-decadal recurrence frequency while the fining-upward sand sequences on the fan indicate that the channel is still experiencing events with a 150–250 year recurrence frequency out to 3.5 km water depths.    

Sequence stratigraphy of the subaqueous Changjiang (Yangtze River) delta since the Last Glacial Maximum

NASA Astrophysics Data System (ADS)

Xu, Taoyu; Wang, Guoqing; Shi, Xuefa; Wang, Xin; Yao, Zhengquan; Yang, Gang; Fang, Xisheng; Qiao, Shuqing; Liu, Shengfa; Wang, Xuchen; Zhao, Quanhong

2016-01-01

This study focuses on sedimentary research at the subaqueous Changjiang (Yangtze River) delta, based on five high-resolution seismic profiles and seven borehole cores with accurate AMS 14C datings. Three distinct seismic units were identified from the seismic profiles according to seismic reflection characteristics, and five sedimentary facies were recognized from borehole cores. These facies constituted a fining upward sedimentary sequence in relation to postglacial sea-level transgression. Three sequence surfaces (sequence boundary (SB), transgressive surface (TS), and maximum flooding surface (MFS)) demarcate the boundaries between early transgressive system tract (E-TST), late transgressive system tract (L-TST), early highstand system tract (E-HST) and late highstand system tract (L-HST), which constitute the sixth order sequence. These system tracts were developed coevally with postglacial sea-level rise. E-TST (~ 19-12 ka BP) corresponds to an incised-valley infilling in the early stages of postglacial transgression whereas L-TST (~ 12-7.5 ka BP) was formed during the last stage of postglacial transgression. The progradational structure of L-TST reflected in seismic profiles is possibly related to the intensification of the East Asian summer monsoon. E-HST (~ 7.5-2 ka BP) was deposited in response to the highstand after maximum postglacial transgression was reached, while L-HST (~ 2 ka BP-present) was initiated by accelerated progradation of the Changjiang delta.

Biostratigraphic, chronostratigraphic, and stratigraphic sequence analysis of Lower Tertiary marine sediments of Alabama for indicators of sea-level change

DOE Office of Scientific and Technical Information (OSTI.GOV)

Thompson, P.R.; Baum, G.R.

1991-03-01

Early Eocene to late Oligocene marine sedimentary units in southwestern Alabama were sampled at closely spaced intervals to derive a precise time-stratigraphic framework and to determine the paleoecological and mineralogical responses to fluctuations in sea level. Paleontologic control consisted of planktonic, smaller and larger benthonic foraminifera, calcareous nannofossils, dinoflagellates, and megafossils. Paleomagnetic reversals were delineated in two boreholes which, when supplemented by strontium isotope dates and the biostratigraphic control, provided a robust in situ chronostratigraphy for the Gulf Coast lower Tertiary. Paleoecologic trends in regression and transgression can be clearly correlated across major regional facies changes. Using the chronostratigraphy developedmore » here, the second-, third-, and fourth-orders of Vail's global sea-level cycles can be recognized and demonstrate the influence of sea-level change on sedimentation. Stratigraphic systems tracts (SSTs) and bounding surfaces in outcrop were determined by lithologic variations and paleoecologic trends, and additionally by gamma logs in the cores. The lower sequence boundary occurs at a contact where an older, relatively fine-grained, deep-water, fossiliferous unit was abruptly succeeded by a coarse-grained, shallow-water, poorly fossiliferous unit. The transgressive surface occurs at the base of a fining- and deepening-upwards unit that was commonly glauconitic and very fossiliferous. Transgression culminated with a pulse of planktonic microfossils in a bed having reduced clastic sedimentation; on the log the surface of maximum starvation was marked by a gamma spike.« less

Magnetic Mineralogy as Indicator of dry Conditions in Lacustrine Sediments From Santa María del Oro, Nayarit, Central Mexico

NASA Astrophysics Data System (ADS)

Ortega, B.; Vazquez, G.; Rodriguez, A.

2007-05-01

Combined magnetic and geochemical analysis were conducted on laminated sediments from Santa Maria del Oro, a crater lake in Nayarit (Mexico), to build up a model of paleoenvironmental conditions for the late Holocene. The occurrence of a severe drought at the end of the archeological Classic period (100 - 900 AD) has been documented in sites of central Mexico (Zirahuen lake and Lerma basin), the Gulf of Mexico coast (Los Tuxtlas) and the Yucatan peninsula. The effects of this climatic event are considered to have stressed the social and political situation in the Yucatan area and other sites in Mesoamerica, and resulted in the "collapse" of the Maya civilization. Santa Maria del Oro sediments between ca. 600 - 1140 AD are characterized by repeated sequences of ocher silt laminae with high inorganic carbon content, authigenic siderite, and low concentration of SD magnetic minerals, followed upward by an increase of concentrations of fine grained SD and SP ferrimagnetic minerals in brown silt laminae. This sequence is considered to represent dissolution-precipitation cycles of magnetic minerals in low erosion, concentrated waters and anoxic water-sediment interface environments. Dissolution of magnetite occurs in reductive conditions, which are considered as warmer and dryer periods. Above the ocher silt, precipitation of fine grained magnetite occurs when conditions change to oxic environments. Ostracode C and O isotopy document a negative precipitation/evaporation balance during this time period.

The Accotink Schist, Lake Barcroft Metasandstone, and Popes Head Formation; keys to an understanding of the tectonic evolution of the northern Virginia Piedmont

USGS Publications Warehouse

Drake, Avery Ala; Lyttle, Peter T.

1981-01-01

The newly named Accotink Schist and Lake Barcroft Metasandstone of the Eastern Fairfax sequence are the structurally lowest metamorphic rocks in the northernmost Piedmont of Virginia. The Accotink consists of beds of pelitic schist that have thin basal intervals containing graded, very fine grained metasiltstone, as well as interbeds of metasandstone like that in the overlying Lake Barcroft Metasandstone. The unit is characterized by the Bouma turbidite sequences Te and Tde and can be assigned to turbidite facies D and E. The thickness of the Accotink is not known because its base is not exposed. The Accotink Schist grades up into the Lake Barcroft Metasandstone, which consists of two types of metasandstone. Type I metaarenite is quartzofeldspathic granofels which forms thick sequences of amalgamated beds that can best be described as belonging to the Bouma turbidite sequence Ta and to turbidite facies B 2 . Type II metagraywacke of the Lake Barcroft Metasandstone consists of micaceous metagraywacke in thin to medium beds, which can be described as belonging to the Buoma turbidite sequences Tabe and (or) Tae and to turbidite facies C. The Lake Barcroft Metasandstone appears to be about 400 m thick. It and the Accotink Schist are thought to represent a coarsening-upward sequence of an outer submarine-fan association of rocks. The Eastern Fairfax sequence is overlain by the Sykesville Formation. We believe that this contact is a movement surface upon which the Sykesville was emplaced by subaqueous sliding. The Sykesville contains isoclinally folded fragments, thought to be rip-ups, of Accotink and Lake Barcroft rocks. The Eastern Fairfax sequence is intruded by rocks of the Occoquan Granite batholith, which contains pendants of isoclinally folded schist and metagraywacke. Mter intrusion, the metasedimentary and plutonic rocks were folded together. Gamet and chlorite porphyroblasts within the Eastern Fairfax sequence appear to be related to the emplacement of the batholith. The minimum age of the Eastern Fairfax sequence is that of the Occoquan Granite batholith, currently thought to be about 560 m.y. The sequence, then, is considered to be of Early Cambrian age or older. The Accotink Schist and Lake Barcroft Metasandstone have some lithic similarity to the Loch Raven Schist and Oella Formation of Crowley (1976) of the Baltimore area, but a correlation is very uncertain at this time. The newly named Popes Head Formation overlies all other metasedimentary and transported meta-igneous rocks in northernmost Virginia west ofthe Occoquan Granite batholith and is intruded by the batholith. The Popes Head consists of a lower Old Mill Branch Metasiltstone Member and an upper Station Hills Phyllite Member. The Old Mill Branch consists largely of alternating coarser and finer grained strata that are mostly fine- to very fine grained, mineralogically quite mature graded metasiltstone, which can be described as belonging to Bouma turbidite sequence Tbde and (or) Tde, more rarely Tcde. The metasiltstone contains interbedded intervals in which both felsic and mafic metatuff contain pristine euhedral crystals of igneous minerals. We believe that the metatuff represents ash-fall deposits. The Old Mill Branch appears to be about 730 m thick. The Old Mill Branch grades up into the Station Hills Phyllite Member, which consists of thin- to medium-bedded pelitic phyllite and smaller amounts of very fine grained metasiltstone. The metasiltstone beds are graded, and many phyllite beds appear to have basal in- tervals containing graded, very fine grained metasiltstone. These beds can be described as belonging to Bouma turbidite sequence Tde. The Station Hills has intervals containing chlorite-rich phyllite, which probably represents mafic metatuff. No felsic metatuff has been recognized. The top of the Station Hills is not known, neither therefore, is its thickness. This unit appears to have a maximum thickness of about 300 m in northern

Event sand layers suggesting the possibility of tsunami deposits identified in the upper Holocene sequence nearby the Kuwana fault, central Japan

NASA Astrophysics Data System (ADS)

Niwa, Y.; Sugai, T.; Matsuzaki, H.

2012-12-01

The Kuwana fault is located on coastal area situated on inner part of the Ise Bay, central Japan, which opens to the Nankai Trough. This reverse fault displaces a late Pleistocene terrace surface with 1 to 2 mm/yr of average vertical slip rate, and a topset of delta at several meters, respectively. And, this fault is estimated to have generated two historical earthquakes (the AD 745 Tempyo and the AD 1586 Tensho earthquakes). We identified two event sand layers from upper Holocene sequence on the upthrown side of the Kuwana fault. Upper Holocene deposits in this study area show prograding delta sequence; prodelta mud, delta front sandy silt to sand, and flood plain sand/mud, respectively, from lower to upper. Two sand layers intervene in delta front sandy silt layer, respectively. Lower sand layer (S1) shows upward-coarsening succession, whereas upper sand layer (S2) upward-fining succession. These sand layers contain sharp contact, rip-up crust, and shell fragment, indicating strong stream flow. Radiocarbon ages show that these strong stream flow events occurred between 3000 and 1600 years ago. Decreasing of salinity is estimated from decreasing trend of electrical conductivity (EC) across S1. Based on the possibility that decreasing of salinity can be occurred by shallowing of water depth caused by coseismic uplift, and that S1 can be correlated with previously known faulting event on the Kuwana fault, S1 is considered to be tsunami deposits caused by faulting on the Kuwana fault. On the other hand, S2, which cannot be correlated with previously known faulting events on the Kuwana fault, may be tsunami deposits by ocean-trench earthquake or storm deposits. In the presentation, we will discuss more detail correlation of these sand deposits not only in the upthrown side of the Kuwana fault, but also downthrown side of the fault.

Lithofacies variation across the Mammoth Cave-Pope Megagroup boundary -- a sequence stratigraphic approach

DOE Office of Scientific and Technical Information (OSTI.GOV)

McDonald, T.A.; Tabor, E.; Marzolf, J.E.

1994-04-01

Regional stratigraphic relations in southern Illinois suggest a major unconformity near the top of the St. Genevieve Limestone. Large exposures below the unconformity within the Anna quarries display a retrogradational parasequence-stacking pattern. Eight to 12 m-thick parasequences comprise thinning-upward marine bioclastic wackestone overlain by oolitic and bioclastic thickening-upward eolian( ) grainstone. An eolian origin for the bioclastic grainstones is supported by large scale cross stratification (0.5 to 2 m-thick sets), reworked character of rounded, coated bioclasts, and preserved duneforms. At the quarries, the unconformity is directly overlain by mudstones and sandstones. Thinning-upward mudstones interbedded with very thin (1 to 3more » cm thick) intraclastic packstone tempestites crop out in a roadcut about 500 m NE of the quarries. Small-scale ripples and absence of trace fossils in lower mudstone units suggest an estuarine or lagoonal, brackish-waver environment. The trace fossil Conostichus and horizontal burrows appear abruptly in the upper, thin mudstone units. Highly bioturbated green and red shales overlying a 1 to 4 m-thick covered interval in a roadcut 610 m farther north are interbedded with tidally deposited, medium- to coarse-grained, bioclastic grainstones. The shale-draped, medium cross-bedded grainstones document ten or more tidal bundles. The cross-bedded grainstone is overlain by wavy- to flaser-bedded very fine-grained sandstone suggestive of sand flat origin. These sandstones are overlain by the Aux Vases Sandstone. Numerous low-angle bounding surfaces within the Aux Vases enclose low-angle, wedge-planar cross-bedding. A single irregular surface coated by a few centimeters of poorly sorted unstratified sandstone defines a ravinement surface near the base of the Aux Vases Sandstone.« less

Sedimentologic and Stratigraphic Aspects of Late Quaternary (<14 cal. ka?) Valley Fill (Paleo-Roanoke River) Beneath the Barrier Islands of the Outer Banks, North Carolina, USA

NASA Astrophysics Data System (ADS)

Farrell, K. M.; Brooks, R. W.

2002-12-01

Provided here is a preliminary interpretation of the late Pleistocene (<14 cal. ka) facies succession that infilled the paleo-Roanoke River valley, and its transition into the overlying barrier island complex beneath the Outer Banks of North Carolina. Previous work (e.g. Riggs and others, 1992) reported that the Albemarle Embayment of eastern N.C. is underlain by a series of Pleistocene paleovalley complexes and provided hypotheses to test regarding valley distribution, sea level changes, and the ages of facies and sequences generated in response to coastal evolution. This report provides stratigraphic and sedimentologic criteria to support collaborative interpretations of eight cores acquired by a coastal geology cooperative research program on the Outer Banks to test these hypotheses. In cores OBX-02, 03, and 05, the late Quaternary (<14 cal. ka) fill is about 41 m thick. Here it erosionally overlies a bioturbated marine shelf deposit (OBX-2, 3, 5) that Wehmiller (personal communication) correlated (at OBX-05, depth -41 m) with the early/middle Pleistocene aminozone, AZ-4 (see Riggs and others, 1992). Above this, the late Quaternary fill (in cores OBX-02, 03, 05, 06) includes a succession of four facies units: 1) a basal sandy gravel (<6 m), 2) a dark gray complexly interbedded mud and gravel (<9 m), 3) bioturbated muddy sand (<15 m), and 4) an upward fining sand, with a basal gravel (<15 m). (Dimensional aspects of these units remain undefined until integration with GPR and seismic profiles). Six radiocarbon dates (from Thieler, personal communication) on samples from unit 2 (OBX-05: from -32.3, -33.6 and -35 m; OBX-02: from -27.7, -33.0, and -33.0 m) fall within the range 10 to 14 cal. ka. These were deposited during the Younger Dryas (Mallinson and others, Thieler, personal communications). Stratigraphic relations suggest that unit 1, although not dated, was deposited at the onset of this phase of global cooling. Unit 1, interpreted as fluvial thalweg and channel bar deposits, fines upward into unit 2. Unit 2 includes deltaic like features such as laminations, wavy, flaser and lenticular bedding, coarse lags with gravel, detrital organics, chaotic bedding, and slump blocks. It was deposited subaqueously with no evidence of subaerial exposure in a non-marine setting. The interbedding of high-energy lags and suspension deposits in unit 2 suggests that periods of intense flooding alternated with standing water deposition. Units 3 and 4 are Holocene. Unit 3 appears to either coarsen upward from a basal interbedded zone with unit 2 (OBX-02, 05), or is a sharp-based upward fining unit (OBX-03). It has common Ophiomorpha and Thalassinoides burrows (OBX-02, 03, 05, 06), traces of parallel laminations (OBX-02, 03, 06), and zones of mud intraclasts (OBX-05 only). Unit 3 formed as accretionary shoreface deposits that laterally infilled the embayment during the Holocene transgression. The contact at the base of unit 3 is a significant flooding surface. Unit 4 represents a complex of inlet, shoreface and regressive beach ridge deposits.

Shallowing-upward cyclic patterns within larger-scale transgressive-regressive (T-R) sedimentary sequences, St. Peter through Decorah Formations, Ordovician, Iowa area

DOE Office of Scientific and Technical Information (OSTI.GOV)

Witzke, B.J.

1993-03-01

Four large-scale (2--8 Ma) T-R sedimentary sequences of M. Ord. age (late Chaz.-Sherm.) were delimited by Witzke Kolata (1980) in the Iowa area, each bounded by local to regional unconformity/disconformity surfaces. These encompass both siliciclastic and carbonate intervals, in ascending order: (1) St. Peter-Glenwood fms., (2) Platteville Fm., (3) Decorah Fm., (4) Dunleith/upper Decorah fms. Finer-scale resolution of depth-related depositional features has led to regional recognition of smaller-scale shallowing-upward cyclicity contained within each large-scale sequence. Such smaller-scale cyclicity encompasses stratigraphic intervals of 1--10 m thickness, with estimated durations of 0.5--1.5 Ma. The St. Peter Sandst. has long been regarded asmore » a classic transgressive sheet sand. However, four discrete shallowing-upward packages characterize the St. Peter-Glenwood interval regionally (IA, MN, NB, KS), including western facies displaying coarsening-upward sandstone packages with condensed conodont-rich brown shale and phosphatic sediments in their lower part (local oolitic ironstone), commonly above pyritic hardgrounds. Regional continuity of small-scale cyclic patterns in M. Ord. strata of the Iowa area may suggest eustatic controls; this can be tested through inter-regional comparisons.« less

Reservoir characterization of Mesaverde (Campanian) bedload fluvial meanderbelt sandstones, northwestern Colorado

DOE Office of Scientific and Technical Information (OSTI.GOV)

Jones, J.R. Jr.

1984-04-01

Reservoir characterization of Mesaverde meanderbelt sandstones is used to determined directional continuity of permeable zones. A 500-m (1600 ft) wide fluvial meanderbelt in the Mesaverde Group is exposed as laterally continuous 3-10-m (10-33-ft) high sandstone cliffs north of Rangely, Colorado. Forty-eight detailed measured sections through 3 point bar complexes oriented at right angles to the long axis of deposition and 1 complex oriented parallel to deposition were prepared. Sections were tied together by detailed sketches delineating and tracing major bounding surfaces such as scours and clay drapes. These complexes contain 3 to 8 multilateral sandstone packages separated by 5-20 cmmore » (2-8 in.) interbedded siltstone and shale beds. Component facies are point bars, crevasse splays, chute bars, and floodplain/overbank deposits. Two types of lateral accretion surfaces are recognized in the point bar facies. Gently dipping lateral accretions containing fining-upward sandstone packages. Large scale trough cross-bedding at the base grades upward into ripples and plane beds. Steeply dipping lateral accretion surfaces enclose beds characterized by climbing ripple cross laminations. Bounding surfaces draped by shale lags can seal vertically stacked point bars from reservoir communication. Scoured boundaries allow communication in some stacked point bars. Crevasse splays showing climbing ripples form tongues of very fine-grained sandstone which flank point bars. Chute channels commonly cut upper point bar surfaces at their downstream end. Chute facies are upward-fining with small scale troughs and common dewatering structures. Siltstones and shales underlie the point bar complexes and completely encase the meanderbelt system. Bounding surfaces at the base of the complexes are erosional and contain large shale rip-up clasts.« less

Closed depression topography and Harps soil, revisited

USDA-ARS?s Scientific Manuscript database

The Harps soil (Fine-loamy, mixed superactive, mesic Typic Calciaquoll) developed around wetland depressions. The purpose of this study is 1) to delineate surface deposition of carbonates representing Harps soil which results from outward and upward flow around closed depressions, and 2) to relate t...

Texture and depositional history of near-surface alluvial deposits in the central part of the western San Joaquin Valley, California

USGS Publications Warehouse

Laudon, Julie; Belitz, Kenneth

1989-01-01

Saline conditions and associated high levels of selenium and other soluble trace elements in soil, shallow ground water, and agricultural drain water of the western San Joaquin Valley, California, have prompted a study of the texture of near-surface alluvial deposits in the central part of the western valley. Texture is characterized by the percentage of coarse-grained sediment present within a specified subsurface depth interval and is used as a basis for mapping the upper 50 feet of deposits. Resulting quantitative descriptions of the deposits are used to interpret the late Quaternary history of the area. Three hydrogeologic units--Coast Range alluvium, flood-basin deposits, and Sierran sand--can be recognized in the upper 50 feet of deposits in the central part of the western San Joaquin Valley. The upper 30 feet of Coast Range alluvium and the adjacent 5 to 35 feet of flood-basin deposits are predominantly fine grained. These fine-grained Coast Range deposits are underlain by coarse-grained channel deposits. The fine-grained flood basin deposits are underlain by coarse-grained Sierran sand. The extent and orientation of channel deposits below 20 feet in the Coast Range alluvium indicate that streams draining the Coast Range may have been tributary to the axial stream that deposited the Sierran sand and that streamflow may have been to the southeast. The fining-upward stratigraphic sequence in the upper 50 feet of deposits and the headward retreat of tributary stream channels from the valley trough with time support a recent hypothesis of climatic control of alluviation in the western San Joaquin Valley.

Upward gaze and head deviation with frontal eye field stimulation.

PubMed

Kaiboriboon, Kitti; Lüders, Hans O; Miller, Jonathan P; Leigh, R John

2012-03-01

Using electrical stimulation to the deep, most caudal part of the right frontal eye field (FEF), we demonstrate a novel pattern of vertical (upward) eye movement that was previously only thought possible by stimulating both frontal eye fields simultaneously. If stimulation was started when the subject looked laterally, the initial eye movement was back to the midline, followed by upward deviation. Our finding challenges current view of topological organisation in the human FEF and may have general implications for concepts of topological organisation of the motor cortex, since sustained stimulation also induced upward head movements as a component of the vertical gaze shift. [Published with video sequences].

Braided fluvial sedimentation in the lower paleozoic cape basin, South Africa

NASA Astrophysics Data System (ADS)

Vos, Richard G.; Tankard, Anthony J.

1981-07-01

Lower Paleozoic braided stream deposits from the Piekenier Formation in the Cape Province, South Africa, provide information on lateral and vertical facies variability in an alluvial plain complex influenced by a moderate to high runoff. Four braided stream facies are recognized on the basis of distinct lithologies and assemblages of sedimentary structures. A lower facies, dominated by upward-fining conglomerate to sandstone and mudstone channel fill sequences, is interpreted as a middle to lower alluvial plain deposit with significant suspended load sedimentation in areas of moderate to low gradients. These deposits are succeeded by longitudinal conglomerate bars which are attributed to middle to upper alluvial plain sedimentation with steeper gradients. This facies is in turn overlain by braid bar complexes of large-scale transverse to linguoid dunes consisting of coarse-grained pebbly sandstones with conglomerate lenses. These bar complexes are compared with environments of the Recent Platte River. They represent a middle to lower alluvial plain facies with moderate gradients and no significant suspended load sedimentation or vegetation to stabilize channels. These bar complexes interfinger basinward with plane bedded medium to coarse-grained sandstones interpreted as sheet flood deposits over the distal portions of an alluvial plain with low gradients and lacking fine-grained detritus or vegetation.

Holocene ruptures along the North Anatolia Fault in the Marmara Sea, Turkey: Sedimentary processes, spatial extent and age

NASA Astrophysics Data System (ADS)

Braudy, N.; McHugh, C. M.; Cagatay, M.; Seeber, L.; Henry, P.; Geli, L.

2010-12-01

The North Anatolian fault (NAF), which extends east west for over 1600 km across Turkey, is one of the world's major continental transforms. Since 1939, a sequence of M>7 earthquakes ruptured progressively westward the entire NAF east of Marmara. The most recent and westernmost events in this sequence, the Mw7.4 Izmit and the Mw7.2 Duzce main shocks of 1999, ruptured about 160 km of the fault and were particularly destructive (~17,000 deaths). The only portion of the NAF that did not rupture in the last century is the segment beneath the Marmara Sea that is considered a seismic gap and presents high risk to Istanbul and surroundings. To decipher Holocene earthquake ruptures and the processes leading to their signature in the sedimentary record we applied submarine paleoseismology techniques to study a transect of three 10 m long cores recovered from the Central Basin. The sediments were analyzed with x-ray radiography, for grain size variability at cm-scale, geochemical elements at mm-scale and physical properties. These measurements were calibrated to a chronology developed from short-lived radioisotopes (137-Cs, 210-Pb) and radiocarbon. Turbidites were sampled from the deepest part of the Central Basin, from 1248 to 1262 m depth. As previously documented by McHugh et al (2006), these turbidites are characterized by multiple sand and coarse silt beds, each normally graded, and that together grade upwards into a non-stratified silt that also fines upwards. Elemental concentrations of Al and Si increase with the sand and coarser silt components indicative of an influx of terrigenous components. These complex turbidites-homogenites are as thick as 1 m and dominate the sedimentation in the basin (≈80%). The remainder includes 10 to 20 cm thick fining upwards silt deposits. We interpret these depositional events to represent large earthquakes, the ones including transport of sand are proximal, and the ones without the sand are distal. We measured concentrations of Ca within the coarse component of the complex turbidite and depletion of Mn above. These elemental trends, previously documented by Cagatay et al (2008) can generally be associated with the turbidite-homogenite units and are linked to diagnetic processes resulting from diffuse fluid/gas escape during strong shaking of the sea floor or after the earthquake. Fifteen turbidites-homogenites were preserved within the past 4000 years with an average recurrence interval of 300 years. This is consistent with previous estimates and with a constant slip rate for the NAF for the mid to late Holocene. We have tentatively linked one of the turbidite-homogenite deposits to the 740 AD historical earthquake and two others to possibly the 1912 > Ms 7.4 and more distal 1963 or 1964 events Ms >6.4 linked to the Yalova and Manyas faults, respectively.

Seismites in a Proterozoic tidal succession, Singhbhum, Bihar, India

NASA Astrophysics Data System (ADS)

Bhattacharya, H. N.; Bandyopadhyay, Sandip

1998-08-01

Early Proterozoic metasediments of the Chaibasa Formation (Galudih-Ghatsila-Dhalbhumgarh region, Singhbhum, Bihar, India) comprise a number of cyclic fining-upward prograding successions of tidalites. The tidalites show indications for earthquakes in the form of synsedimentary deformation features, apart from the structures due to high-energy wave action. Deformed cross-bedding, convolute laminations, synsedimentary faults, graben-like structures, sandstone dykes, pseudonodules and slump folds record the seismic activity. A gradual decline in the frequency of seismites and tsunami-related depositional features, in combination with an upward increase in thickness of the tidal cycles, are attributed to gradual diminishing of tectonic activity within the basin.

Late Pleistocene and Holocene sedimentary facies on the Ebro continental shelf

USGS Publications Warehouse

Diaz, J.; Nelson, C.H.; Barber, J.H.; Giro, S.

1990-01-01

Late Pleistocene-Holocene history of the Ebro continental shelf of northeastern Spain is recorded in two main sedimentary units: (1) a lower, transgressive unit that covers the shelf and is exposed on the outer shelf south of 40??40???N, and (2) an upper, progradational, prodeltaic unit that borders the Ebro Delta and extends southward along the inner shelf. The lower transgressive unit includes a large linear shoal found at a water depth of 90 m and hardground mounds at water depths of 70-80 m. Some patches of earlier Pleistocene prodelta mud remain also, exposed or covered by a thin veneer of transgressive sand on the northern outer shelf. This relict sand sheet is 2-3 m thick and contains 9000-12,500 yr old oyster and other shells at water depths of 78-88 m. The upper prodelta unit covers most of the inner shelf from water depths of 20-80 m and extends from the present Ebro River Delta to an area to the southwest where the unit progressively thins and narrows. Interpretation of high-resolution seismic reflection data shows the following facies occurring progressively offshore: (1) a thick stratified facies with thin progradational "foresets beds", (2) a faintly laminated facies with sparse reflectors of low continuity, and (3) a thin transparent bottomset facies underlain by a prominent flat-lying reflector. Deposition in the northern half of the prodelta began as soon as the shoreline transgressed over the mid-shelf, but progradation of the southern half did not begin until about 1000-3000 yrs after the transgression. A classic deltaic progradational sequence is shown in the Ebro prodelta mud by (1) gradation of seismic facies away from the delta, (2) coarsening-upward sequences near the delta and fining-upward sequences in the distal mud belt deposits, and (3) thin storm-sand layers and shell lags in the nearshore stratified facies. The boundaries of the prodeltaic unit are controlled by increased current speeds on the outer shelf (where the shelf narrows) and by development of the shoreface sand body resulting from shoaling waves on the inner shelf. ?? 1990.

Mixing of biogenic siliceous and terrigenous clastic sediments: South Belridge field and Beta field, California

DOE Office of Scientific and Technical Information (OSTI.GOV)

Schwartz, D.E.

1990-05-01

The intermixing and interbedding of biogenically derived siliceous sediment with terrigenous clastic sediment in reservoirs of upper Miocene age provides both reservoir rock and seal and influences productivity by affecting porosity and permeability. Miocene reservoirs commonly contain either biogenic-dominated cyclic diatomite, porcelanite, or chert (classic Monterey Formation) or clastic-dominated submarine fan sequences with interbedded or intermixed siliceous members of biogenic origin. Biogenic-clastic cycles, 30-180 ft thick, at South Belridge field were formed by episodic influx of clastic sediment from distant submarine fans mixing with slowly accumulating diatomaceous ooze. The cycles consist of basal silt and pelletized massive diatomaceous mudstone, overlainmore » by burrowed, faintly bedded clayey diatomite and topped by laminated diatomite. Cycle tops have higher porosity and permeability, lower grain density, and higher oil saturation than clay and silt-rich portions of the cycles. Submarine fan sediments forming reservoirs at the Beta field are comprised of interbedded sands and silts deposited in a channelized middle fan to outer fan setting. Individual turbidites display fining-upward sequences, with oil-bearing sands capped by wet micaceous silts. Average sands are moderately to poorly sorted, fine- to medium-grained arkosic arenites. Sands contain pore-filling carbonate and porcelaneous cements. Porcelaneous cement consists of a mixture of opal-A, opal-CT, and chert with montmorillonite and minor zeolite. This cement is an authigenic material precipitated in intergranular pore space. The origin of the opal is biogenic, with recrystallization of diatom frustules (opal-A) into opal-CT lepispheres and quartz crystals. Porcelaneous cement comprises 4-21% of the bulk volume of the rock. Seventy percent of the bulk volume of the cement is micropore space.« less

Do Stackable Credentials Reinforce Stratification or Promote Upward Mobility? An Analysis of Health Professions Pathways Reform in a Community College Consortium

ERIC Educational Resources Information Center

Giani, Matthew; Fox, Heather Lee

2017-01-01

Career pathways, comprised of stackable credentials and a coherently aligned sequence of programmes of study, are being hailed as an effective means for promoting postsecondary attainment and upward mobility, particularly for low-income and low-skilled adult workers. However, concerns have been raised regarding whether this strategy accomplishes…

Fine-Grained Turbidites: Facies, Attributes and Process Implications

NASA Astrophysics Data System (ADS)

Stow, Dorrik; Omoniyi, Bayonle

2016-04-01

Within turbidite systems, fine-grained sediments are still the poor relation and sport several contrasting facies models linked to process of deposition. These are volumetrically the dominant facies in deepwater and, from a resource perspective, they form important marginal and tight reservoirs, and have great potential for unconventional shale gas, source rocks and seals. They are also significant hosts of metals and rare earth elements. Based on a large number of studies of modern, ancient and subsurface systems, including 1000s of metres of section logging, we define the principal genetic elements of fine-grained deepwater facies, present a new synthesis of facies models and their sedimentary attributes. The principal architectural elements include: non-channelised slope-aprons, channel-fill, channel levee and overbank, turbidite lobes, mass-transport deposits, contourite drifts, basin sheets and drapes. These comprise a variable intercalation of fine-grained facies - thin-bedded and very thin-bedded turbidites, contourites, hemipelagites and pelagites - and associated coarse-grained facies. Characteristic attributes used to discriminate between these different elements are: facies and facies associations; sand-shale ratio, sand and shale geometry and dimensions, sand connectivity; sediment texture and small-scale sedimentary structures; sediment fabric and microfabric; and small-scale vertical sequences of bed thickness. To some extent, we can relate facies and attribute characteristics to different depositional environments. We identify four distinct facies models: (a) silt-laminated mud turbidites, (b) siliciclastic mud turbidites, (c) carbonate mud turbidites, (d) disorganized silty-mud turbidites, and (e) hemiturbidites. Within the grainsize-velocity matrix turbidite plot, these all fall within the region of mean size < 0.063mm, maximum grainsize (one percentile) <0.2mm, and depositional velocity 0.1-0.5 m/s. Silt-laminated turbidites and many mud turbidites reflect uniform, steady flow characteristics and a depositional sorting mechanism for silt-clay separation; whereas disorganized turbidites reflect an unsteady flow type, either as a short-lived surge or as a mud-contaminated mid-flow. Fine-grained carbonate turbidites show certain distinctive characteristics linked to the different dynamic behaviour of fine carbonate material. Hemiturbidites are the result of long-distance transport and an upward buoyancy mechanism during deposition.

Sedimentological characteristics of the 2015 Tropical Cyclone Pam overwash deposits from Vanuatu, South Pacific

NASA Astrophysics Data System (ADS)

Hong, I.; Pilarczyk, J.; Horton, B.; Fritz, H. M.; Kosciuch, T. J.; Wallace, D. J.; Dike, C.; Rarai, A.; Harrison, M. J.; Jockley, F. R.

2016-12-01

Historical observations and overwash sediments deposited by prehistoric tropical cyclones (TC) enable the assessment of long-term patterns of tropical cyclone variability. Prehistoric TC reconstructions, however, are limited in their ability to quantify the intensity of past events. Modern analogues present an opportunity to characterize overwash sediments deposited by a TC of known intensity. On 13 March 2015, TC Pam made landfall on Vanuatu as a Category 5 storm with 10-minute sustained wind speeds as high as 250 km/h. Less than three months after landfall, we (1) measured the height and inland extent of TC Pam's storm surge; and (2) described the sedimentological characteristics of the TC Pam overwash deposits focusing on two of the hardest hit islands, Efate and Tanna. TC Pam's storm surge inundated Vanuatu with maximum high water marks of 5.6 m above mean sea level (MSL) on the island of Efate and 5.5 m above MSL on the island of Tanna. We measured surge heights of 4.2 m above MSL at our study area Manuro on Efate and 3.3 m above MSL at our study area Port Resolution Bay on Tanna. TC Pam deposited a medium-grained (mean: 1.20 Φ), moderately well-sorted (sorting: 0.55 Φ) mixed-carbonate sand with trace amounts of volcanic sediments and coral fragments at Manuro. The sand extends 130 m inland, abruptly transitioning into pumice that extends 400 m inland into Lake Otas. A sharp contact separates the base of the sand and the underlying organic-rich sand unit. In contrast, TC Pam deposited a medium-grained (mean: 1.81 Φ), moderately well-sorted (sorting: 0.67 Φ) volcanic sand at Port Resolution Bay. The sand extends up to 320 m inland. A sharp contact separates the base of the sand and the underlying rooted sandy soil. We found both a coarsening upward and fining upward sequences in trench M1 at Manuro and upward fining in trenches RB 3 and RB 2 at Port Resolution Bay. We used a combination of measured flow heights obtained at the Port Resolution Bay site and laboratory derived grain size settling velocities to calculate the distance of sediment transport caused by TC Pam's storm surge. Based on the distribution of settling velocities from our samples, transport distances for material deposited in the trench suggests a source for the overwash sand ranging from the supratidal berm to 290 m seaward in the nearshore at Port Resolution Bay.

Occurrence of inter-eruption debris flow and hyperconcentrated flood-flow deposits on Vesuvio volcano, Italy

NASA Astrophysics Data System (ADS)

Lirer, L.; Vinci, A.; Alberico, I.; Gifuni, T.; Bellucci, F.; Petrosino, P.; Tinterri, R.

2001-02-01

In the period between AD 79 and AD 472 eruptions, inter-eruption debris flow and hyperconcentrated-flood-flow deposits were deposited in the Somma-Vesuvio areas. These deposits, forming cliffs at the Torre Bassano and Torre Annunziata, were generated by highly erosive floods, whose erosive capacity was enhanced by acceleration due to the steepness of the volcano slopes. In this type of deposits were distinguished five depositional facies (from A to E) outcropping well at Torre Bassano where they are stacked in three fining-upward (FU) sequences, probably representing three forestepping — backstepping episodes in the emplacement area of gravity flows. These five facies from coarse to fine are interpreted to represent the downcurrent evolution of particular composite sediment gravity flows characterized by horizontal segregation of the main grain-size population. The blocking of these highly concentrated composite parent flows would first produce the deposition of the coarse front part to form facies A and then the overriding of this deposit by the bipartite flow, which constitutes the body of the flow. This flow is composed of a highly concentrated basal inertia carpet responsible for the deposition of facies B, C and D and an upper hyperconcentrated flood flow that forms facies E, through traction plus fallout processes, respectively. Finally, the occurrence of "lahar" type events at Somma-Vesuvio region even at present times is discussed.

Comparison of transgressive and regressive clastic reservoirs, late Albian Viking Formation, Alberta basin

DOE Office of Scientific and Technical Information (OSTI.GOV)

Reinson, G.E.

1996-06-01

Detailed stratigraphic analysis of hydrocarbon reservoirs from the Basal Colorado upwards through the Viking/Bow Island and Cardium formations indicates that the distributional trends, overall size and geometry, internal heterogeneity, and hydrocarbon productivity of the sand bodies are related directly to a transgressive-regressive (T-R) sequence stratigraphic model. The Viking Formation (equivalent to the Muddy Sandstone of Wyoming) contains examples of both transgressive and regressive reservoirs. Viking reservoirs can be divided into progradational shoreface bars associated with the regressive systems tract, and bar/sheet sands and estuary/channel deposits associated with the transgressive systems tract. Shoreface bars, usually consisting of fine- to medium-grained sandstones,more » are tens of kilometers long, kilometers in width, and in the order of five to ten meters thick. Transgressive bar and sheet sandstones range from coarse-grained to conglomeratic, and occur in deposits that are tens of kilometers long, several kilometers wide, and from less than one to four meters in thickness. Estuary and valley-fill reservoir sandstones vary from fine-grained to conglomeratic, occur as isolated bodies that have channel-like geometries, and are usually greater than 10 meters thick. From an exploration viewpoint the most prospective reservoir trends in the Viking Formation are those associated with transgressive systems tracts. In particular, bounding discontinuities between T-R systems tracts are the principal sites of the most productive hydrocarbon-bearing sandstones.« less

Stratigraphy and depositional environments of Fox Hills Formation in Williston basin

DOE Office of Scientific and Technical Information (OSTI.GOV)

Daly, D.J.

The Fox Hills Formation (Maestrichtian), representing part of a regressive wedge deposited during the withdrawal of the sea from the Western Interior at the close of the Cretaceous, consists of marginal marine strata transitional between the offshore deposits of the underlying Pierre Shale and the terrestrial deltaic and coastal deposits of the overlying Hell Creek Formation. An investigation of outcrops of the Fox Hills Formation along the western and southern flanks of the Williston basin and study of over 300 oil and gas well logs from the central part of the basin indicate that the formation can be divided bothmore » stratigraphically and areally. Stratigraphically, the Fox Hills can be divided into lower and upper sequences; the lower includes the Trail City and Timber Lake Members, and the upper sequence includes the Colgate Member in the west and the Iron Lightning and Linton Members in the east. Areally, the formation can be divided into a northeastern and western part, where the strata are 30-45 m thick and are dominated by the lower sequence, and into a southeastern area where both the lower and upper sequences are well developed in a section 80-130 m thick. Typically, the lower Fox Hills consists of upward-coarsening shoreface or delta-front sequences containing hummocky bedding and a limited suite of trace fossils, most notably Ophiomorpha. In the southeast, however, these strata are dominated by bar complexes, oriented northeast-southwest, composed of cross-bedded medium to very fine-grained sand with abundant trace and body fossils. The upper Fox Hills represents a variety of shoreface, deltaic, and channel environments. The strata of the Fox Hills Formation exhibit facies similar to those reported for Upper Cretaceous gas reservoirs in the northern Great Plains.« less

Mesoarchean black shale -iron sedimentary sequences in Cleaverville Formation, Pilbara Australia: drilling preliminary result of DXCL2

NASA Astrophysics Data System (ADS)

Kiyokawa, S.; Ito, T.; Ikehara, M.; Yamaguchi, K. E.; Onoue, T.; Horie, K.; Sakamoto, R.; Teraji, S.; Aihara, Y.

2012-12-01

The 3.2-3.1 Ga Dixon island-Cleaverville formations are well-preserved hydrothermal oceanic sequence at oceanic island arc setting (Kiyokawa et al., 2002, 2006, 2012). The Dixon Island (3195+15 Ma) - Cleaverville (3108+13 Ma) formations formed volcano-sedimentary sequences with hydrothermal chert, black shale and banded iron formation to the top. Based on the scientific drilling as DXCL1 at 2007 and DXCL2 at 2011, lithology was clearly understood. Four drilling holes had been done at coastal sites; the Dixon Island Formation is DX site (100m) and the Cleaverville Formation is CL2 (40m), CL1 (60m) and CL3 (200m) sites and from stratigraphic bottom to top. These sequences formed coarsening and thickening upward black shale-BIF sequences. The Dixon Island Formation consists komatiite-rhyolite sequences with many hydrothermal veins and very fine laminated cherty rocks above them. The Cleaverville Formation contains black shale, fragments-bearing pyroclastic beds, white chert, greenish shale and BIF. Especially, CL3 core, which drilled through the Iron formation, shows siderite-chert beds above black shale identified before magnetite lamination bed. The magnetite bed formed very thin laminated bed with siderite lamination. This magnetite bed was covered by black shale beds again. New U-Pb SHRIMP data of the pyroclastic in black shale is 3109Ma. Estimated 2-8 cm/1000year sedimentation rate are identified in these sequences. Our preliminary result show that siderite and chert layers formed before magnetite iron sedimentation. The lower-upper sequence of organic carbon rich black shales are similar amount of organic content and 13C isotope (around -30per mill). So we investigate that the Archean iron formation, especially Cleaverville iron formation, was highly related by hydrothermal input and started pre-syn iron sedimentation at anoxic oceanic condition.

Evidence of Past Large Storms or Tsunamis from an Uplifted Section of the Southern Hikurangi Margin, Wairarapa Coast, New Zealand

NASA Astrophysics Data System (ADS)

Mitchell, S. P.; Jessica, P.; Clark, K.; Kosciuch, T. J.; Reinhardt, E. G.

2017-12-01

Evidence of past large storms or tsunamis from an uplifted section of the southern Hikurangi margin, Wairarapa coast, New Zealand Stephen Mitchell1, Jessica Pilarczyk1, Kate Clark2, Thomas Kosciuch1, Eduard Reinhardt31University of Southern Mississippi, Department of Marine Science 2GNS Science, New Zealand 3McMaster University The Hikurangi margin, located along the east coast of New Zealand, has generated multiple tsunamigenic-earthquakes in the historic times that have impacted coastlines of the North Island. Knowledge of the possible magnitudes and recurrence intervals associated with Hikurangi earthquakes and tsunamis is necessary to understand and mitigate hazards facing New Zealand's coasts. Events such as the 1931 Napier earthquake, which caused severe ground shaking, and the Gisborne tsunami of 1947 that reached 10 meters high, demonstrate the earthquake and tsunami hazards associated with the Hikurangi margin. To better understand these hazards, longer-term geologic records are needed. Along the Wairarapa coast of the North Island of New Zealand, marine terraces provide evidence for multiple Hikurangi earthquakes over the past 7,000 years. Evidence for possible tsunami inundation in this area has also been discovered, but the record is patchy in spatial and temporal extent. We found three anomalous sand layers preserved within an uplifted beach exposure along the Wairarapa coast. The sand layers, consisting of very fine to coarse sand (3.5-0.8 Φ), sharply overlie paleosols containing fine to medium sized silt (6.1-7.1 Φ) in a sequence that extends for approximately 400 meters along shore. We assign a marine origin to the sand layers because they contain relatively high elemental concentrations of calcium and barium. By contrast, the paleosols contained relatively high elemental concentrations of iron. The marine sands contain evidence in support of tsunami inundation; rip-up clasts, coarse pulses, fining upward sequences, and erosive contacts were observed in each of the three sands. Radiocarbon dating will constrain the ages of the marine sands, providing a record of possible tsunamis­­ that may be used to better understand tsunami hazards along the southern Hikurangi margin.

Investigating the influence of lithologic heterogeneity on gas hydrate formation and methane recycling at the base of the gas hydrate stability zone in channelized systems

NASA Astrophysics Data System (ADS)

Daigle, H.; Nole, M.; Cook, A.; Malinverno, A.

2017-12-01

In marine environments, gas hydrate preferentially accumulates in coarse-grained sediments. At the meso- to micro-scale, however, hydrate distribution in these coarse-grained units is often heterogeneous. We employ a methane hydrate reservoir simulator coupling heat and mass transfer as well as capillary effects to investigate how capillary controls on methane solubility affect gas and hydrate accumulations in reservoirs characterized by graded bedding and alternating sequences of coarse-grained sands and fine-grained silt and clay. Simulations bury a channelized reservoir unit encased in homogeneous, fine-grained material characterized by small pores (150 nm) and low permeability ( 1 md in the absence of hydrate). Pore sizes within each reservoir bed between vary between coarse sand and fine silt. Sands have a median pore size of 35 microns and a lognormal pore size distribution. We also investigate how the amount of labile organic carbon (LOC) affects hydrate growth due to microbial methanogenesis within the sediments. In a diffusion-dominated system, methane movies into reservoir layers along spatial gradients in dissolved methane concentration. Hydrate grows in such a way as to minimize these concentration gradients by accumulating slower in finer-grained reservoir layers and faster in coarser-grained layers. Channelized, fining-upwards sediment bodies accumulate hydrate first along their outer surfaces and thence inward from top to bottom. If LOC is present in thin beds within the channel, higher saturations of hydrate will be distributed more homogeneously throughout the unit. When buried beneath the GHSZ, gas recycling can occur only if enough hydrate is present to form a connected gas phase upon dissociation. Simulations indicate that this is difficult to achieve for diffusion-dominated systems, especially those with thick GHSZs and/or small amounts of LOC. However, capillary-driven fracturing behavior may be more prevalent in settings with thick GHSZs.

Investigating the influence of lithologic heterogeneity on gas hydrate formation and methane recycling at the base of the gas hydrate stability zone in channelized systems

DOE Office of Scientific and Technical Information (OSTI.GOV)

Daigle, Hugh; Nole, Michael; Cook, Ann

In marine environments, gas hydrate preferentially accumulates in coarse-grained sediments. At the meso- to micro-scale, however, hydrate distribution in these coarse-grained units is often heterogeneous. We employ a methane hydrate reservoir simulator coupling heat and mass transfer as well as capillary effects to investigate how capillary controls on methane solubility affect gas and hydrate accumulations in reservoirs characterized by graded bedding and alternating sequences of coarse-grained sands and fine-grained silt and clay. Simulations bury a channelized reservoir unit encased in homogeneous, fine-grained material characterized by small pores (150 nm) and low permeability (~1 md in the absence of hydrate). Poremore » sizes within each reservoir bed between vary between coarse sand and fine silt. Sands have a median pore size of 35 microns and a lognormal pore size distribution. We also investigate how the amount of labile organic carbon (LOC) affects hydrate growth due to microbial methanogenesis within the sediments. In a diffusion-dominated system, methane movies into reservoir layers along spatial gradients in dissolved methane concentration. Hydrate grows in such a way as to minimize these concentration gradients by accumulating slower in finer-grained reservoir layers and faster in coarser-grained layers. Channelized, fining-upwards sediment bodies accumulate hydrate first along their outer surfaces and thence inward from top to bottom. If LOC is present in thin beds within the channel, higher saturations of hydrate will be distributed more homogeneously throughout the unit. When buried beneath the GHSZ, gas recycling can occur only if enough hydrate is present to form a connected gas phase upon dissociation. Simulations indicate that this is difficult to achieve for diffusion-dominated systems, especially those with thick GHSZs and/or small amounts of LOC. However, capillary-driven fracturing behavior may be more prevalent in settings with thick GHSZs.« less

Anatomy and dynamics of a floodplain, Powder River, Montana, U.S.A.

USGS Publications Warehouse

Pizzuto, J.E.; Moody, J.A.; Meade, R.H.

2008-01-01

Centimeter-scale measurements on several Powder River floodplains provide insights into the nature of overbank depositional processes that created the floodplains; during a 20-year period after a major flood in 1978. Rising stages initially entered across a sill at the downriver end of the floodplains. Later, as stages continued to rise, water entered the floodplains through distinct low saddles along natural levees. The annual maximum depth of water over the levee crest averaged 0.19 in from 1983 through 1996, and the estimated flow velocities were approximately 0.15 m s-1. Water ponded in the floodplain trough, a topographic low between the natural levee and the pre-flood riverbank, and mud settled as thin layers of nearly constant thickness. Mud layers alternated with sand layers, which were relatively thick near the channel. Together, these beds created a distinctive natural levee. In some locations, individual flood deposits began as a thin mud layer that gradually coarsened upwards to medium-grained sand. Coarsening-upwards sequences form initially as mud because only the uppermost layers of water in the channel supply the first overbank flows, which are rich in mud but starved of sand. At successively higher stages, fine sands and then medium sands increase in concentration in the floodwater and are deposited as fine- and medium-sand layers overlying the initial mud layer. Theoretical predictions from mathematical models of sediment transport by advection and diffusion indicate that these processes acting alone are unlikely to create the observed sand layers of nearly uniform thickness that extend across much of the floodplain. We infer that other transport processes, notably bedload transport, must be important along Powder River. Even with the centimeter-scale measurements of floodplain deposits, daily hydraulic data, and precise annual surface topographic surveys, we were unable to determine any clear correspondence between the gauged flow record of overbank floods and the depositional layers mapped in the floodplain. These results provide a detailed example of floodplain deposits and depositional processes that should prove useful for interpreting natural levee deposits in a variety of geologic settings. Copyright ?? 2008, SEPM (Society for Sedimentary Geology).

Recognition of strong seasonality and climatic cyclicity in an ancient, fluvially dominated, tidally influenced point bar: Middle McMurray Formation, Lower Steepbank River, north-eastern Alberta, Canada

NASA Astrophysics Data System (ADS)

Jablonski, Bryce V. J.; Dalrymple, Robert W.

2016-04-01

Inclined heterolithic stratification in the Lower Cretaceous McMurray Formation, exposed along the Steepbank River in north-eastern Alberta, Canada, accumulated on point bars of a 30 to 40 m deep continental-scale river in the fluvial-marine transition. This inclined heterolithic stratification consists of two alternating lithologies, sand and fine-grained beds. Sand beds were deposited rapidly by unidirectional currents and contain little or no bioturbation. Fine-grained beds contain rare tidal structures, and are intensely bioturbated by low-diversity ichnofossil assemblages. The alternations between the sand and fine-grained beds are probably caused by strong variations in fluvial discharge; that are believed to be seasonal (probably annual) in duration. The sand beds accumulated during river floods, under fluvially dominated conditions when the water was fresh, whereas the fine-grained beds accumulated during the late stages of the river flood and deposition continued under tidally influenced brackish-water conditions during times of low-river flow (i.e. the interflood periods). These changes reflect the annual migration in the positions of the tidal and salinity limits within the fluvial-marine transition that result from changes in river discharge. Sand and fine-grained beds are cyclically organized in the studied outcrops forming metre-scale cycles. A single metre-scale cycle is defined by a sharp base, an upward decrease in sand-bed thickness and upward increases in the preservation of fine-grained beds and the intensity of bioturbation. Metre-scale cycles are interpreted to be the product of a longer term (decadal) cyclicity in fluvial discharge, probably caused by fluctuations in ocean or solar dynamics. The volumetric dominance of river-flood deposits within the succession suggests that accumulation occurred in a relatively landward position within the fluvial-marine transition. This study shows that careful observation can reveal much about the interplay of processes within the fluvial-marine transition, which in turn provides a powerful tool for determining the palaeo-environmental location of a deposit within the fluvial-marine transition.

GWAS and fine-mapping of 35 production, reproduction and conformation traits with imputed sequences of 27K Holstein bulls

USDA-ARS?s Scientific Manuscript database

Fine-mapping of causal variants is becoming feasible for complex traits in livestock GWAS, as an increasing number of animals are sequenced. Imputation has been routinely applied to ascertain sequence variants in large genotyped populations based on small reference populations of sequenced animals. ...

GWAS and fine-mapping of 35 production, reproduction, and conformation traits with imputed sequences of 27K Holstein bulls

USDA-ARS?s Scientific Manuscript database

Imputation has been routinely applied to ascertain sequence variants in large genotyped populations based on reference populations of sequenced animals. With the implementation of the 1000 Bull Genomes Project and increasing numbers of animals sequenced, fine-mapping of causal variants is becoming f...

Ichnology of fine-grained mixed carbonate-siliciclastic turbidites, Wood River Formation, Pennsylvanian-Permian south-central Idaho

DOE Office of Scientific and Technical Information (OSTI.GOV)

Burton, B.R.; Link, P.K.

1991-06-01

In south-central Idaho, the Wood River Formation (Pennsylvanian-Permian) contains a stratigraphic megacycle over 2,000 m thick that is composed of fine-grained mixed carbonate-siliciclastic turbidites. Complete and partial (Bouma) turbidite structural sequences in these rocks are arranged in upward thinning cycles 15 to 30 m thick in which top-cut-out (Ta-c) turbidite facies in the lower part grade vertically into base-cut-out (Td-f) turbidites in the upper part. These cycles are interpreted to represent the autocyclic lateral migration of turbidite lobes. A mixed trace fossil assemblage of pascichnia and fordinichnia are present in these rocks and can be separated into pre-depositional and post-turbiditemore » ichnocoenoses. Quiet-water, pre-turbidite deposits are dark-colored, laminated, and carbonaceous, and represent anoxic to dysoxic inter-turbidite basinal conditions; they contain only Chondrites traces. Turbidity currents introduced oxygenated bottom water which fostered the temporary development of a post-turbidite ichnocoenose of pascichnia which is best developed in the medial portion of turbidite beds and lobes. Trace fossil tiering shows that a post-turbidite ichnocoenose of fodinichnia also developed, and persisted after the disappearance of pascichnia. Animals that produced the fodinichnial traces probably were part of an autochthonous benthic fauna rather than a short-lived allochthonous fauna. They may have migrated with the slowly avulsing turbidite lobes and exploited allochthonous oxygen and the carbonaceous food supply.« less

Permian storm current-produced offshore bars from an ancient shelf sequence : Northwestern Karoo basin, republic of South Africa

NASA Astrophysics Data System (ADS)

Smith, A. M.; Zawada, P. K.

The Ecca-Beaufort transition zone from the Karoo Basin comprises upward-coarsening sequences which are interpreted as prograding, storm-produced offshore bars. Eight facies are recognised: (A) dark-grey shale, (B) thinly interbedded siltstone and mudstone, (C) thinly interbedded siltstone and very fine-grained sandstone, (D) blue-grey coarse-grained siltstone, (E) low-angle truncated and flat-laminated sandstone, (F) wave-rippled sandstone, (G) planar cross-bedded sandstone, (H) intraformational clay-pellet conglomerate. Four sub-environments are recognised, these being: (1) the bar crest which comprises proximal tempestites, (2) the bar slope consisting of soft-sediment deformed siltstone, (3) the bar fringe/ margin which is composed of storm layers and offshore siltstones and (4) the interbar/offshore environment comprising siltstone and distal storm layers. These bars formed in response to wave and storm processes and migrated across a muddy shelf environment. The orientation of bars was probably coast-parallel to subparallel with respect to the inferred north-northwest-south-southeast coastline. These proposed, storm-produced bars acted as major depo-centres within the shelf setting of the study area. As shelf sediments are recorded from almost the entire northwestern Karoo Basin it is anticipated that bar formation was an important sedimentary factor in the deposition of the sediments now referred to as the Ecca-Beaufort transition zone.

A 3-Dimensional Model of Water-Bearing Sequences in the Dominguez Gap Region, Long Beach, California

USGS Publications Warehouse

Ponti, Daniel J.; Ehman, Kenneth D.; Edwards, Brian D.; Tinsley, John C.; Hildenbrand, Thomas; Hillhouse, John W.; Hanson, Randall T.; McDougall, Kristen; Powell, Charles L.; Wan, Elmira; Land, Michael; Mahan, Shannon; Sarna-Wojcicki, Andrei M.

2007-01-01

A 3-dimensional computer model of the Quaternary sequence stratigraphy in the Dominguez gap region of Long Beach, California has been developed to provide a robust chronostratigraphic framework for hydrologic and tectonic studies. The model consists of 13 layers within a 16.5 by 16.1 km (10.25 by 10 mile) square area and extends downward to an altitude of -900 meters (-2952.76 feet). Ten sequences of late Pliocene to Holocene age are identified and correlated within the model. Primary data to build the model comes from five reference core holes, extensive high-resolution seismic data obtained in San Pedro Bay, and logs from several hundred water and oil wells drilled in the region. The model is best constrained in the vicinity of the Dominguez gap seawater intrusion barrier where a dense network of subsurface data exist. The resultant stratigraphic framework and geologic structure differs significantly from what has been proposed in earlier studies. An important new discovery from this approach is the recognition of ongoing tectonic deformation throughout nearly all of Quaternary time that has impacted the geometry and character of the sequences. Anticlinal folding along a NW-SE trend, probably associated with Quaternary reactivation of the Wilmington anticline, has uplifted and thinned deposits along the fold crest, which intersects the Dominguez gap seawater barrier near Pacific Coast Highway. A W-NW trending fault system that approximately parallels the fold crest has also been identified. This fault progressively displaces all but the youngest sequences down to the north and serves as the southern termination of the classic Silverado aquifer. Uplift and erosion of fining-upward paralic sequences along the crest of the young fold has removed or thinned many of the fine-grained beds that serve to protect the underlying Silverado aquifer from seawater contaminated shallow groundwater. As a result of this process, the potential exists for vertical migration of seawater into the producing aquifers and subsequent landward migration of intruded waters beneath the existing Dominguez barrier. Incipient invasion of the Silverado aquifer by chloride-enriched waters is observed in a recently drilled well located along the crest of the fold seaward of the barrier and at a depth of 440 feet (134 meters). These new observations and interpretations indicate that the new sequence-based approach to defining the stratigraphy of the Dominguez Gap area may have important implications for seawater intrusion management. To test this, it will be useful to overlay existing water-quality and water level data onto the framework model and to incorporate the new stratigraphy into a transport model.

Reconstruction of paleo-inlet dynamics using sedimentologic analyses, geomorphic features, and benthic foraminiferal assemblages: former ephemeral inlets of Cedar Island, Virginia, USA

NASA Astrophysics Data System (ADS)

McBride, R.; Wood, E. T.

2017-12-01

Cedar Island, VA is a low-profile, washover-dominated barrier island that has breached at least three times in the past sixty years. Cedar Island Inlet, a former wave-dominated tidal inlet, was open for the following time periods: 1) 1956-1962, 2) 1992-1997, and 3) 1998-2007. Air photos, satellite imagery, and geomorphic features (i.e., relict flood tidal deltas, recurved-spit ridges) record the spatial and temporal extent of the three ephemeral inlets. Based on three sediment vibracores, benthic foraminiferal and sedimentologic analyses offer high resolution insights of inlet dynamics and lifecycle evolution. Four foraminiferal biofacies are completely dominated by Elphidium excavatum (54-100%) and contain unique assemblages of accessory species based on cluster analyses: tidal inlet floor (low abundance estuarine and shelf species; 23% Haynesina germanica); flood tidal delta/inlet fill (high abundance estuarine and shelf species; 2% Buccella frigida, 2% Ammonia parkinsoniana, and 2% Haynesina germanica); high-energy inlet fill (low abundance, low diversity shelf species; 9% Elphidium gunteri); and washover/beach/aeolian (low abundance, predominantly shelf species; 3% Buccella frigida and 3% Ammonia parkinsoniana). The estuarine biofacies is barren of all foraminifera. Grain size trends indicate a first order coarsening-upward succession with second order coarsening- and fining-upwards packages in inlet throat deposits, while a first order fining-upward succession is observed in flood tidal delta deposits with two second order coarsening-upward packages in the proximal flood tidal delta. Contrary to typical wave-dominated tidal inlets that open, migrate laterally in the direction of net longshore transport, and close, the 1998-2007 tidal inlet, and possibly the 1956-1962 inlet, migrated laterally and rotated, whereas the 1992-1997 inlet remained stationary and did not rotate. In the vicinity of the vibracores, preserved deposits are attributed to the 1956-1962 and 1998-2007 tidal inlets and not to the 1992-1997 inlet. Additionally, a previously undocumented older inlet deposit was discovered. Thus, each ephemeral inlet has undergone a unique lifecycle where tidal prism, accommodation space, and flood tidal delta morphology influenced the degree of migration and rotation.

Depositional facies, environments and sequence stratigraphic interpretation of the Middle Triassic-Lower Cretaceous (pre-Late Albian) succession in Arif El-Naga anticline, northeast Sinai, Egypt

NASA Astrophysics Data System (ADS)

El-Azabi, M. H.; El-Araby, A.

2005-01-01

The Middle Triassic-Lower Cretaceous (pre-Late Albian) succession of Arif El-Naga anticline comprises various distinctive facies and environments that are connected with eustatic relative sea-level changes, local/regional tectonism, variable sediment influx and base-level changes. It displays six unconformity-bounded depositional sequences. The Triassic deposits are divided into a lower clastic facies (early Middle Triassic sequence) and an upper carbonate unit (late Middle- and latest Middle/early Late Triassic sequences). The early Middle Triassic sequence consists of sandstone with shale/mudstone interbeds that formed under variable regimes, ranging from braided fluvial, lower shoreface to beach foreshore. The marine part of this sequence marks retrogradational and progradational parasequences of transgressive- and highstand systems tract deposits respectively. Deposition has taken place under warm semi-arid climate and a steady supply of clastics. The late Middle- and latest Middle/early Late Triassic sequences are carbonate facies developed on an extensive shallow marine shelf under dry-warm climate. The late Middle Triassic sequence includes retrogradational shallow subtidal oyster rudstone and progradational lower intertidal lime-mudstone parasequences that define the transgressive- and highstand systems tracts respectively. It terminates with upper intertidal oncolitic packstone with bored upper surface. The next latest Middle/early Late Triassic sequence is marked by lime-mudstone, packstone/grainstone and algal stromatolitic bindstone with minor shale/mudstone. These lower intertidal/shallow subtidal deposits of a transgressive-systems tract are followed upward by progradational highstand lower intertidal lime-mudstone deposits. The overlying Jurassic deposits encompass two different sequences. The Lower Jurassic sequence is made up of intercalating lower intertidal lime-mudstone and wave-dominated beach foreshore sandstone which formed during a short period of rising sea-level with a relative increase in clastic supply. The Middle-Upper Jurassic sequence is represented by cycles of cross-bedded sandstone topped with thin mudstone that accumulated by northerly flowing braided-streams accompanying regional uplift of the Arabo-Nubian shield. It is succeeded by another regressive fluvial sequence of Early Cretaceous age due to a major eustatic sea-level fall. The Lower Cretaceous sequence is dominated by sandy braided-river deposits with minor overbank fines and basal debris flow conglomerate.

A reservoir for solar-wind-produced water in lunar soils

NASA Astrophysics Data System (ADS)

Taylor, L.; Liu, Y.; Zent, A.; Quinn, R.; Ichimura, A.

2012-09-01

Discoveries of new sources of WATER on the Moon are becoming more numerous as our research progresses. All these recent discoveries of different forms of H (OH, HOH, and H2O ice) on the Moon, both endogenic and exogenic, have reshaped our view of "water" ON and IN the Moon Despite these discoveries, a potential large reservoir, LUNAR SOIL, has been largely overlooked until recently [1-2]. This was the first report and confirmation of OH in micro-meteoriteformed, impact glass in lunar soils; so-called "agglutinates", with abundances of up to 500 ppmw H2O, presents a medium for the accumulation of H from all the various sources. And the Lunar Soil Characterization Consortium (LSCC) [3-5] has demonstrated that the impact-melt glass portion of the fine-grain sizes of the lunar soil contains upwards of 70-80 % of such water-bearing glass. This could make for lunar soil feedstock with upwards of ~0.1 wt% H2O, in addition to any water produced solarwind hydrogen reduction of ilmenite, etc. Therefore, thermal rendering of the fine-portions of the soil for solar-wind volatiles (e.g., H, He-3, C, N) will encounter additional quantities of water, exceeding those of the absorbed solar-wind.

Stages of rootless cone formation observed within the Raudhólar cone group, Iceland

NASA Astrophysics Data System (ADS)

Fitch, E. P.; Hamilton, C.; Fagents, S. A.; Thordarson, T.

2013-12-01

Secondary (rootless) cones form when lava interacts explosively with water contained in the substrate, and represent a largely degassed, end-member system that can elucidate mechanisms of magma-water interactions in the absence of primary degassing-induced fragmentation. Rootless cones are well documented in Iceland. The Raudhólar rootless cone group, located within the ~5200-year-old Ellidaá lava flow on the south-eastern outskirts of Reykjavík, was extensively quarried during the Second World War and now provides excellent cross-sections through the tephra sequences. Taking advantage of this exposure, we performed detailed stratigraphic, grain-size, and componentry analyses, which suggest that the energetics of rootless explosions vary substantially during cone formation. The lower unit contains the most substrate sediment and is characterized by dilute pyroclastic density current deposits. The middle unit is dominated by a succession of bed-pairs, each containing a finer-grained lower layer and coarser-grained upper layer. In the upper unit, the succession grades into a welded section that caps the cone. The abundance of substrate sediment generally decreases upwards within the cone, which suggests that the efficiency of lava-substrate mixing decreased with time. In addition, clast size generally increases upwards within the cone, implying that the fragmentation energy also decreased as the rootless eruption progressed. Both lines of evidence suggest that the explosions decreased in intensity with time, likely due to the depletion of available groundwater. However, alternating fine- and coarse-grained beds imply cycles of increased and decreased fragmentation efficiency, which we attribute to groundwater recharge and depletion during the event. Therefore, this study presents a detailed look at rootless cone formation and provides the foundation for future work on this important, yet understudied, system.

Sedimentary facies and Holocene progradation rates of the Changjiang (Yangtze) delta, China

NASA Astrophysics Data System (ADS)

Hori, Kazuaki; Saito, Yoshiki; Zhao, Quanhong; Cheng, Xinrong; Wang, Pinxian; Sato, Yoshio; Li, Congxian

2001-11-01

The Changjiang (Yangtze) River, one of the largest rivers in the world, has formed a broad tide-dominated delta at its mouth during the Holocene sea-level highstand. Three boreholes (CM97, JS98, and HQ98) were obtained from the Changjiang delta plain in 1997-1998 to clarify the characteristics of tide-dominated delta sediments and architecture. Based on sediment composition and texture, and faunal content, core sediments were divided into six depositional units. In ascending order, they were interpreted as tidal sand ridge, prodelta, delta-front, subtidal to lower intertidal flat, upper intertidal flat, and surface soil deposits. The deltaic sequence from the prodelta deposits to the delta front deposits showed an upward-coarsening succession, overlain by an upward-fining succession from the uppermost part of the delta front deposits to the surface soil. Thinly interlaminated to thinly interbedded sand and mud (sand-mud couplets), and bidirectional cross laminations in these deposits show that tide is the key factor affecting the formation of Changjiang deltaic facies. Sediment facies and their succession combined with AMS 14C dating revealed that isochron lines cross unit boundaries clearly, and delta progradation has occurred since about 6000 to 7000 years BP, when the rising sea level neared or reached its present position. The average progradation rate of the delta front was approximately 50 km/kyear over the last 5000 years. The progradation rate, however, increased abruptly ca. 2000 years BP, going from 38 to 80 km/kyear. The possible causes for this active progradation could have been an increase in sediment production in the drainage basin due to widespread human interference and/or decrease in deposition in the middle reaches related to the channel stability caused by human activity and climatic cooling after the mid-Holocene.

Effects of fluidization of the host sediment on peperite textures: A field example from the Cretaceous Buan Volcanics, SW Korea

NASA Astrophysics Data System (ADS)

Gihm, Yong Sik; Kwon, Chang Woo

2017-04-01

In the Cretaceous Buan Volcanics (SW Korea), blocky and fluidal peperites are hosted in a massive pumiceous lapilli tuff intruded by intermediate dikes. Blocky peperites, the most abundant species, are characterized by polyhedral or platy juvenile clasts and a jigsaw-crack texture. Fluidal peperites occur only along dike margins, where the host sediments are composed of well sorted, fine to very fine ash (fine-grained zone), and are characterized by fluidal or globular juvenile clasts with irregular or ragged margins. The fine-grained zone is interpreted to form by grain size segregation caused by upward moving pore water (fluidization) that has resulted from heat transfer from intruding magma toward waterlogged host sediments during intrusion. With the release of pore water and the selective entrainment of fine-grained ash, fine-grained zones formed within the host sediments. Subsequent interactions between the fine-grained zone and the intruding magma resulted in ductile deformation of the magma before fragmentation, which generated fluidal peperites. Outside the fine-grained zone, intruding magma fragmented in a brittle manner because of the relative deficiency of both pore water and fine-grained ash, resulting in the formation of blocky peperites. The results of this study suggest that redistribution of constituent particles (ash) and interstitial fluids during fluidization resulted in heterogeneous physical conditions of the host sediments, which influenced peperite-forming processes, as reflected by the different peperite textures.

Using lake sediments from Buarvatnet to reconstruct multiple episodic events found at Folgefonn Peninsula, Norway

NASA Astrophysics Data System (ADS)

Roethe, T.; Bakke, J.; Støren, E.

2016-12-01

Here we present work in progress from Buarvatnet at the Folgefonn Peninsula, located on the west coast of Norway. Earlier work from Buarvatnet indicated several distinct spikes in the Silica count rates, detected by the ITRAX surface XRF-scanner. However, the process behind these distinct spikes was not understood. The arrival of high-resolution and innovative instruments at EARTHLAB, in particular the computed tomography (CT) scanner and grain Morphometer, have the potential to get a process-based understanding of these distinct layers and unravel the frequency and timing of such events. Multiple sediment cores were retrieved using a modified piston corer and a Uwitech corer from Buarvatnet. The sediments have been analysed using a multi-proxy approach and the analyses included magnetic properties, loss-on-ignition, dry bulk density, grain size/shape, geochemical analysis (XRF scanning) and CT-scanning. Accurate age-control will be achieved through 210Pb dating of the top-most sediments and 14C dating of terrestrial macrofossils. The lithostratigraphy of the 3.6 m long master sediment core from Buarvatnet is divided into three distinct units. The lower most unit ( 87 cm) is massive with fine-grained greyish sediments, most likely representing the deglaciation of the area. A 224 cm long unit is found above, characterised as dark brown gyttja with multiple thin layers (sub-mm to cm thick) of fine grained sediments. Also in this unit is two distinct sub-units showing a finer upwards sequence. At top, a gradual transition from dark brown gyttja to grey fine-grained sediments is found in the upper-most 19 cm of the sediment core. In total 16 distinct layers is found in the gyttja sequence, including the two sub-units, based on the lithostratigraphy and the prelimnary results from the magnetic, physical and geochemical properties. A preliminary hypothesis is that these distinct layers are due to outburst floods from a glacier-dammed lake upstream from Buarvatnet. In such a scenario, a bedrock threshold dams the meltwater from the retreating glacier and an outburst flood is triggered when the glacier calves or advances into the lake. Understanding the processes behind the multiple events is therefore important in order to highlight the potential hazards in rapid outburst floods in a warming world.

Stratigraphy of fluvial sediment sequences and their palaeoenvironmental information in the foreland of the Serra dos Órgãos, southeastern Brazil

NASA Astrophysics Data System (ADS)

Kirchner, André; Nehren, Udo; Heinrich, Jürgen

2013-04-01

In the hinterland of Rio de Janeiro city the rivers Guapiaçu, Macacu and Iconha originate in the Serra dos Órgãos mountain range and drain into the Atlantic Ocean. Since their channelization in the 1950s, higher flow velocities caused an incision of the rivers into the valley fills. These circumstances provide the possibility to study the alluvial deposits along the streams during low water level and allow conclusions on palaeoenvironmental change and landscape history. Sedimentological investigations of 13 exposures as well as AMS 14C measurements were carried out to investigate sediment properties and reconstruct the sedimentation history within the floodplains. These results enable to distinguish three different facies units. A late Pleistocene Unit I can be detected at the base of the observed exposures and consists of clast-supported fine to coarse gravels. It can be assumed that the gravel bodies were formed by a climatically induced erosional-depositional cycle within a braided river system. The gravels are overlaid by Unit II, a grayish to bluish loam mainly of mid-Holocene age. During generally drier climates these loams have been deposited during high water stages or flooding events as a splay facies proximal to the rivers. A reduced flow competence and relatively stable morphodynamic conditions are assumed for that period. Unit III accumulated in the late Holocene typically consists of several meters of planar or cross bedded sands to fine gravels, interfingered by loamy inclusions, buried peat bogs and organic debris. Fining-upward sequences can be frequently studied within Unit III which were completed by loamy sediments in the uppermost parts of the exposures. The increased flow competence from Unit II to Unit III seems to be a fluvial response to the increased humidity of the late Holocene as well as the enhancement of El Niño-Southern Oscillation (ENSO). Heavy rainfall likely caused higher sediment supply from the steep slopes as well as a reworking of sediments followed by sedimentation in the floodplains. The development of the uppermost loams is attributed to deforestation and land use intensification in historical times which led to higher erosion rates and related sediment loads. An increased human impact can be postulated for the last 250 years.

Method of feeding particulate material to a fluidized bed

DOEpatents

Borio, Richard W.; Goodstine, Stephen L.

1984-01-01

A centrifugal spreader type feeder that supplies a mixture of particulate limestone and coal to the top of a fluidized bed reactor having a flow of air upward therethrough. Large particles of particulate matter are distributed over the upper surface of the bed to utilize the natural mixing within the bed, while fine particles are adapted to utilize an independent feeder that separates them from the large particles and injects them into the bed.

Planned development of a 3D computer based on free-space optical interconnects

NASA Astrophysics Data System (ADS)

Neff, John A.; Guarino, David R.

1994-05-01

Free-space optical interconnection has the potential to provide upwards of a million data channels between planes of electronic circuits. This may result in the planar board and backplane structures of today giving away to 3-D stacks of wafers or multi-chip modules interconnected via channels running perpendicular to the processor planes, thereby eliminating much of the packaging overhead. Three-dimensional packaging is very appealing for tightly coupled fine-grained parallel computing where the need for massive numbers of interconnections is severely taxing the capabilities of the planar structures. This paper describes a coordinated effort by four research organizations to demonstrate an operational fine-grained parallel computer that achieves global connectivity through the use of free space optical interconnects.

Spiky Fine Structure of Type III-like Radio Bursts in Absorption

NASA Astrophysics Data System (ADS)

Chernov, G. P.; Yan, Y. H.; Tan, C. M.; Chen, B.; Fu, Q. J.

2010-03-01

An uncommon fine structure in the radio spectrum consisting of bursts in absorption was observed with the Chinese Solar Broadband Radiospectrometer (SBRS) in the frequency range of 2.6 - 3.8 GHz during an X3.4/4B flare on 13 December 2006 in active region NOAA 10930 (S05W33). Usual fine structures in emission such as spikes, zebra stripes, and drifting fibers were observed at the peak of every new flare brightening. Within an hour at the decay phase of the event we observed bursts consisting of spikes in absorption, which pulsated periodically in frequency. Their instantaneous frequency bandwidths were found to be in the 75 MHz range. Moreover, in the strongest Type III-like bursts in absorption, the spikes showed stripes of the zebra-pattern (ZP) that drifted to higher frequencies. All spikes had the duration as short as down to the limit of the instrument resolution of ≈8 ms. The TRACE 195 Å images indicate that the magnetic reconnection at this moment occurred in the western edge of the flare loop arcade. Taking into account the presence of the reverse-drifting bursts in emission, in the course of the restoration of the magnetic structures in the corona, the acceleration of the beams of fast particles must have occurred both upward and downward at different heights. The upward beams will be captured by the magnetic trap, where the loss-cone distribution of fast particles (responsible for the emission of continuum and ZP) were formed. An additional injection of fast particles will fill the loss-cone later, breaking the loss-cone distribution. Therefore, the generation of continuum will be quenched at these moments, which was evidenced by the formation of bursts in absorption.

Paleoenvironmental model for the occurrence of vertebrate fossils in Carboniferous coal-bearing strata

DOE Office of Scientific and Technical Information (OSTI.GOV)

Hook, R.W.

An interdisciplinary investigation was undertaken to identify the paleoenvironmental factors that governed the accumulation and preservation of a prolific Upper Carboniferous vertebrate assemblage known from a cannel coal underlying the Upper Freeport coal in the Diamond Coal Mine of Linton, Ohio. Stratigraphic data from previous work and field studies within an approximately 15 km radius of the fossil locality show that the channel occupies a 10 km long, north-northwest trending abandoned channel that occurs within a sandstone-dominated, fining-upwards fluvial sequence. Petrographic analysis of samples from eight sites along the course of the abandoned channel establishes that the cannel is composedmore » primarily of spores and very fine-grained micrinitic groundmass. Abundant primary pyrite and the absence of well-reserved humic materials suggest that the fossiliferous cannel originated as a sapropelic peat within a non-acidic anaerobic environment. Skeletal remains of animals are well preserved with little to no mineralogic alteration. Outside the abandoned channel in the Linton area and to the north, Upper Freeport coal averages 1 m in thickness. To the south, the Upper Freeport horizon is represented by interbedded flint clays and freshwater limestones. These sediment distribution patterns reflect the synsedimentary influence of the Transylvania Fault Zone, a previously documented, basement-controlled feature which trends east-west through the study area. Contemporaneous movement along this fault produced a topographic high in the Linton area which was locally entrenched by northward-flowing rivers. Upper Freeport swamps developed on this upthrown surface whereas carbonate lakes formed to the south of the fault zone in topographically lower areas.« less

The relationship between executive function and fine motor control in young and older adults.

PubMed

Corti, Emily J; Johnson, Andrew R; Riddle, Hayley; Gasson, Natalie; Kane, Robert; Loftus, Andrea M

2017-01-01

The present study examined the relationship between executive function (EF) and fine motor control in young and older healthy adults. Participants completed 3 measures of executive function; a spatial working memory (SWM) task, the Stockings of Cambridge task (planning), and the Intra-Dimensional Extra-Dimensional Set-Shift task (set-shifting). Fine motor control was assessed using 3 subtests of the Purdue Pegboard (unimanual, bimanual, sequencing). For the younger adults, there were no significant correlations between measures of EF and fine motor control. For the older adults, all EFs significantly correlated with all measures of fine motor control. Three separate regressions examined whether planning, SWM and set-shifting independently predicted unimanual, bimanual, and sequencing scores for the older adults. Planning was the primary predictor of performance on all three Purdue subtests. A multiple-groups mediation model examined whether planning predicted fine motor control scores independent of participants' age, suggesting that preservation of planning ability may support fine motor control in older adults. Planning remained a significant predictor of unimanual performance in the older age group, but not bimanual or sequencing performance. The findings are discussed in terms of compensation theory, whereby planning is a key compensatory resource for fine motor control in older adults. Copyright © 2016 Elsevier B.V. All rights reserved.

In Situ Sedimentological Evidence for Climate Change in Early Mars Provided by the Curiosity Rover in Gale Crater

NASA Astrophysics Data System (ADS)

Heydari, Ezat; Fairen, Alberto G.

2016-10-01

The Striated formation is one of the rock units that was deposited in Gale crater, Mars, during the Late Noachian to Hesperian time (4.2 to 3.6 billion years ago). It crops out for 3 km along the Curiosity's traverse. The Striated formation strikes N65○E and has a depositional dip of 10○ - 20○ to SE. It consists of 500 m to 1000 m of highly rhythmic layers each 1 m to 4 m in thickness. Study of MAHLI and MastCam images provided by the Curiosity Rover indicates that layers form fining-upward cycles consisting of thick-bedded to massive conglomerate at the base that grades upward to thinly bedded conglomerate, then to pebbly sandstone, and topped by laminated, fine grained sandstone. Layers show slump folds, soft sediment deformation, and cross-beddings.The highly rhythmic occurrence and the fining-upward grain size characteristic indicate that each layer within the Striated formation is a coarse-grained turbidite: a type of rock that forms when sediments move down-hill by gravity-driven turbidity flows and deposit in deep waters. We propose that turbidite layers of the Striated formation are related to delivery of sediments to Gale crater by megafloods through its northern rim. Upon entering Gale crater, sediments moved down-hill and deposited as turbidite layers when the crater may have been filled to the rim with water. About 1000 to 3000 turbidite layers are present suggesting the occurrences of as many megafloods during hothouse climatic intervals when Mars was warmer than the Present and had plenty of liquid water. Floods were generated by one or a combination of the following processes: (1) torrential rain along the margins of Mars's Northern Ocean, 500 km to 1000 km to the north, (2) rapid melting of ice in highland areas, and (3) tsunamis formed by impacts on the Northern Ocean. Cold and/or dry climate of icehouse intervals may have followed each warming episode. Mars's climate forcing mechanism and periodicities of climate change are not clear at this point. However, the highly regular and rhythmic nature of turbidite layers point to an orbital triggering mechanism, possibly driven by changes in obliquity.

Fluidization of host sediments and its impacts on peperites-forming processes, the Cretaceous Buan Volcanics, Korea

NASA Astrophysics Data System (ADS)

Kwon, Chang Woo; Gihm, Yong Sik

2017-07-01

In the Cretaceous Buan Volcanics (SW Korea), blocky and fluidal peperites are developed in a bed of poorly sorted, massive pumiceous lapilli tuff (hot sediments) as a result of the vertical to subvertical intrusion of the trachyandesitic dikes into the bed. Blocky peperites are composed of polyhedral or platy juvenile clasts with a jigsaw-crack texture. Fluidal peperites are characterized by fluidal or globular juvenile clasts with irregular or ragged margins. The blocky peperites are ubiquitous in the host sediments, whereas the fluidal peperites only occur in fine-grained zone (well sorted fine to very fine ash) that are aligned parallel to the dike margin. The development of the fine-grained zone within the poorly sorted host sediments is interpreted to form by grain size segregation caused by upward moving pore water (fluidization) that has resulted from heat transfer from intruding magma toward the waterlogged host sediments during intrusion. With the release of pore water and the selective entrainment of fine-grained ash, the fine-grained zone formed within the host sediments. Subsequent interactions between the fine-grained zone and the intruding magma resulted in ductile deformation of the magma, which generated fluidal peperites. Outside the fine-grained zone, because of the relative deficiency of both pore water and fine-grained ash, intruding magma fragmented in a brittle manner, resulting in the formation of blocky peperites. The results of this study suggest that redistribution of constituent particles (ash) and interstitial fluids during fluidization resulted in heterogeneous physical conditions of the host sediments, which influenced peperite-forming processes.

Frequency of event deposits reflecting glacial/interglacial conditions during the last ca. 50,000 years in the south Patagonian maar lake Laguna Potrok Aike, Argentina

NASA Astrophysics Data System (ADS)

Kliem, Pierre; Hahn, Annette; Ohlendorf, Christian; Zolitschka, Bernd; Pasado Science Team

2010-05-01

Laguna Potrok Aike is a 100m deep maar lake located in the dry steppe of southern Patagonia. The catchment area of >200km² mainly consists of till from Bella Vista and Río Ciaike Glaciations as well as of alkali-olivine basalts of the Pali Aike Volcanic Field. Today's regional climate is affected by the Southern Hemispheric Westerlies and the rainshadow effect of the north-south striking Andean mountain chain. Since lakes are valuable terrestrial paleoclimate archives, sediments of Laguna Potrok Aike should reflect shifts of mid latitude wind and pressure fields as well as precipitation changes in southeastern South America. Aiming at the reconstruction of past climate, the deep drilling at Laguna Potrok Aike was accomplished in the framework of the ICDP project PASADO during Sept. to Dec. 2008. By correlation of three holes drilled at Site 2 ca. 700 m south of the lake's center, a composite profile of 106.09 mcd (meters composite depth) was established. According to the lowermost 14C-age of aquatic macro remains from 80.6 mcd, the entire record comprises at least 50,000 years. The initial lithological description indicates that 50.74 m (i.e. 47.8%) of the sediment record consists of remobilized sediment (turbidity currents; homogenites; ball and pillow structures, gravel layers, slumps). Such deposits are almost absent in the top 12 mcd, where laminated clays and silts dominate. Correlation with an existing piston core allows a temporal relation to the Holocene. Apart from obviously remobilized deposits Holocene sediments are distinguished from Late Glacial deposits by a lower frequency of coarse silt/fine sand layers within a silt/clay matrix. Frequency and thickness of remobilized deposits increase with sediment depth. Most reworked sections are composed of three units: (1) a dark, coarse and fining upward base overlain by (2) a homogeneous layer of silt and (3) clay capped by a relatively thin light colored clay layer. Such sequences were often described as homogenites from marine sediments but are only rarely known from lakes. In the record from Laguna Potrok Aike thickest homogenites reach up to 3 m in thickness. In contrast, turbidites are characterized by a fining-upward pattern of the entire sequence. Homogenites in lake and marine sediments are generally regarded as representing a record for regional seismicity or tsunami activity. Since homogenites are not only triggered by seismotectonic activity and no such deposits are represented in the Holocene sediments of Laguna Potrok Aike, we hypothesize that homogenite generation could be linked to different climate conditions during glacial times. Reasons for this climate link may be (1) higher clastic input through the main tributary or (2) an extremely low lake level. The first option could be the result of more intense geomorphodynamic processes in the catchment area than today due to periglacial conditions with permafrost, forcing precipitation and melt water to run off superficially. Evidence for permafrost conditions in this region until the end of the last glacial is given by an OSL-dated sand wedge in the catchment area (19.1 ± 1.4ka). The latter explanation is supported by the occurrence of coarse gravel at the bases of some homogenites as well as by one chaotic gravel-dominated unit between 87 and 89 mcd, considering that the distal core is located 1.8 km from the main tributary.

Marine ostracod turnover tracks orbitally forced palaeoenvironmental changes at the Lower-Middle Pleistocene transition: the case study of the Valle di Manche section (Calabria, southern Italy)

NASA Astrophysics Data System (ADS)

Rossi, Veronica; Scarponi, Daniele; Capraro, Luca; Ferretti, Patrizia; Macrì, Patrizia

2017-04-01

Ostracods, small crustaceans living in almost every aquatic depositional setting, are widely used in palaeoenvironmental reconstructions due to their well-known ecological sensitivity. A close connection between the composition of ostracod fauna and the Milankovitch climate-eustatic variability has been documented in several Plio-Pleistocene marine sections of the Central Mediterranean area. The Valle di Manche section (VdM; Calabria, southern Italy), one of the suitable candidates to host the Global Stratotype Section and Point (GSSP) of the Ionian Stage-Middle Pleistocene, represents an ideal venue where to investigate ostracod turnover in relation to orbitally forced palaeoenvironmental changes, being firmly constrained in time and well documented by a number of independent climatic proxy. A high-resolution, quantitative analysis of the ostracod fauna has been undertaken on the middle part of the VdM, ca. 30 m-thick and showing two T-R cycles developed at the Lower-Middle Pleistocene transition (late MIS 21 to early MIS 18). Within each cycle, a relatively thin, fining-upward transgressive muddy unit is overlain by gradually coarsening upward and more expanded regressive silty to sand packages. A total of 40 samples have been selected to characterise the whole spectrum of lithofacies and detect high-frequency palaeoenvironmental variations especially within homogeneous clayey stratigraphic intervals. Taxa typical of circalittoral (>70/100 m) depths (e.g., Bosquetina dentata, Cytherella vulgatella, Cytheropteron monoceros, Pterygocythereis ceratoptera and Krithe species), commonly accompanied by the lower circalittoral-bathyal species Henryhowella sarsii, occur within the fine-grained units developed during the full interglacials of MIS 21 and MIS 19. Furthermore, ostracod assemblages document that the oxygen availability at the sea floor changed during MIS 19. In contrast, a less-diversified ostracod fauna dominated by Aurila convexa, a species preferring vegetated sandy substrates in the upper circalittoral zone, characterises coarser glacial deposits. Atop the sandy successions A. convexa is partially replaced by Semicytherura ruggierii, suggesting a further decrease in palaeobathymetry and, possibly, an increase in riverine influence. Within each T-R cycle vertical changes in ostracod fauna track both an overall deepening-shallowing upward trend and high-frequency variations in stratal stacking patterns, allowing the precise identification of key sequence stratigraphic surfaces: Transgressive Surface (TS) and Maximum Flooding Surface (MFS). The former, which is marked by a sharp increase in Krithe, Cytherella and Cytheropteron species, develops during the late d18O glacial termination. The MFS, invariably highlighted by concomitant highest and lowest percentages of H. sarsii and A. convexa respectively, matches the lightest d18O values recorded by foraminifers and corresponding to full interglacial conditions. Within the MIS 19 muddy unit, the MFS is identified few decimeters above the Pitagora ash layer, a prominent bed close to the Matuyama-Brunhes geomagnetic reversal.

Mesoarchean Banded Iron Formation sequences in Dixon Island-Cleaverville Formation, Pilbara Australia: Oxygenic signal from DXCL project

NASA Astrophysics Data System (ADS)

Kiyokawa, S.; Ito, T.; Ikehara, M.; Yamaguchi, K. E.; Naraoka, H.; Onoue, T.; Horie, K.; Sakamoto, R.; Aihara, Y.; Miki, T.

2013-12-01

The 3.2-3.1 Ga Dixon island-Cleaverville formations are well-preserved Banded Iron Formation (BIF) within hydrothermal oceanic sequence at oceanic island arc setting (Kiyokawa et al., 2002, 2006, 2012). The stratigraphy of the Dixon Island (3195+15Ma) -Cleaverville (3108+13Ma) formations shows the well preserved environmental condition at the Mesoarchean ocean floor. The stratigraphy of these formations are formed about volcano-sedimentary sequences with hydrothermal chert, black shale and banded iron formation to the top. Based on the scientific drilling of DXCL project at 2007 and 2011, detail lithology between BIF sequence was clearly understood. Four drilling holes had been done at coastal sites; the Dixon Island Formation is DX site (100m) and the Cleaverville Formation is CL2 (40m), CL1 (60m) and CL3 (200m) sites and from stratigraphic bottom to top. Coarsening and thickening upward black shale-BIF sequences are well preserved of the stratigraphy form the core samples. The Dixon Island Formation consists komatiite-rhyolite sequences with many hydrothermal veins and very fine laminated cherty rocks above them. The Cleaverville Formation contains black shale, fragments-bearing pyroclastic beds, white chert, greenish shale and BIF. The CL3 core, which drilled through BIF, shows siderite-chert beds above black shale identified before magnetite lamination bed. U-Pb SHRIMP data of the tuff in lower Dixon Island Formation is 3195+15 Ma and the pyroclastic sequence below the Cleaverville BIF is 3108+13 Ma. Sedimentation rate of these sequence is 2-8 cm/ 1000year. The hole section of the organic carbon rich black shales below BIF are similar amount of organic content and 13C isotope (around -30per mill). There are very weak sulfur MIF signal (less 0.2%) in these black shale sequence. Our result show that thick organic rich sediments may be triggered to form iron rich siderite and magnetite iron beds. The stratigraphy in this sequence quite resemble to other Iron formation (eg. Hamersley BIF). So we investigate that the Cleaverville iron formation, which is one of the best well known Mesoarchean iron formation, was already started cyanobacteria oxygen production system to used pre-syn iron sedimentation at anoxic oceanic condition.

Sequence stratigraphy of the lower Upper Cretaceous Elbtal Group (Saxony, Germany): new data from Middle Cenomanian-Upper Turonian outcrops and boreholes

NASA Astrophysics Data System (ADS)

Richardt, Nadine; Wilmsen, Markus

2013-04-01

The formations of the Saxonian Cretaceous have been combined in the so-called Elbtal Group. Their sedimentation took place in a terrestrial to neritic environment palaeogeographically located between the Mid-European Island (MEI) in the SW and the Lusatian Massif in the NE. The through extended from the narrow marine strait of Saxony into the broad Bohemian Cretaceous Basin (Czech Republic) further to the SE. Deposition has been dominated by marine siliciclastics that accumulated on a graded shelf with basically three main facies zones: the coarse-grained nearshore zone ("Küstensandsteinzone"), the transitional zone ("Faziesübergangszone") and the fine-grained marly offshore facies zone ("Plänerfazies"). In general, transgression proceeded in late Early Cenomanian times from the N. Relictic remains of these marine bioclastic conglomerates (Meißen Formation) only occur in the northwesternmost area of the basin around Meißen and are related to the highstand of the depositional sequence Cenomanian 3 (DS Ce 3). After a short stratigraphic gap, onlap continued in the Middle Cenomanian with the following Niederschöna Formation consisting of coarse-grained braided river deposits at the base grading via carbonaceous point-bar cycles of a meandering river system into bioturbated, partly cross-bedded estuarine sediments toward the top. These sediments record DS Ce 4 and are capped by a paleosol. Sedimentation of DS Ce 5 started with a renewed transgressional pulse initiating the Late Cenomanian. The strata consist of bioturbated, cross-bedded predominantly fine- to medium-grained quartz sandstones with some shell-rich horizons corresponding to the Oberhäslich Formation. The unconformably overlying DS Tu 1 comprises the uppermost Cenomanian Dölzschen Formation and the Lower Turonian part of the Schmilka Formation. The onset of this depositional sequence is marked by a major transgression ("plenus Transgression) drowning the remaining pre-transgression topography (onlap of Dölzschen Formation onto basement highs). The lowermost Turonian "Lohmgrund Marl" defines the base of the Schmilka Formation changing gradually into strongly bioturbated, silty Pläner and coarsening upward into moderately bioturbated, thick-bedded-massive, mainly fine-grained quartz sandstones with occasional clayey or silty layers, shell-rich horizons and sparse wood remains. After an interruption in sedimentation indicated by a root horizon or a conspicuous erosional surface, the Schmilka Formation continues with similar lithology into the early Middle Turonian. It is replaced up-section by the overlying Middle-Upper Turonian Postelwitz Formation, characterized by decreasing thickness of bedding and stronger sedimentary variability (grain size, bioturbation, glauconite and fossil content), including the intercalation of thick units of silty Pläner. The lithological variations of sandy and Pläner intervals nicely reflect the Middle-Late Turonian sea-level changes of DS Tu 2 (early Middle Turonian), DS Tu 3 (late Middle-earliest Late Turonian) and DS Tu 4 (early Late-mid-Late Turonian): Pläner units represent transgressive and highstand conditions, sand packages late highstand as well as falling and lowstand systems tracts. A major mid-Late Turonian sea-level fall is indicated in the upper Postelwitz Formation, initiating DS Tu 5 (Late Turonian) with a strongly basin-ward prograding unit of coarse-grained sandstone. The following transgression culminated in a prominent maximum flooding interval represented by the intercalation of a clayey-fine-grained regional marker bed, forming the base of the Schrammstein Formation (thick-bedded, unfossiliferous medium- to coarse-grained quartz sandstones). In conclusion, all depositional sequences of Middle Cenomanian-Late Turonian age and their bounding unconformities (sequence boundaries SB Ce 4 and 5, SB Tu 1-4) reported from coeval sections around the MEI (e. g., Münsterland Creatceous Basin, Lower Saxonian and Danubian Cretaceous) and other Cretaceous basins in the Tethyan region (e. g., Egypt) are also developed in the Saxonian Cretaceous, supporting eustatic sea-level changes as main triggers for the sequence stratigraphic architecture of the Elbtal Group.

Preservation of intragranular porosity within the Harrodsburg limestone (Middle Mississippian), Newtonville Consolidated Field, Spencer County, Indiana

DOE Office of Scientific and Technical Information (OSTI.GOV)

Rupp, J.A.

Porosity preservation in the reservoir rocks within the Harrodsburg Limestone pool of the Newtonville Consolidated field, Spencer County, Indiana, is a function of both primary facies distribution and inhibited pore-filling sparry calcite cementation. Reservoir facies of the Harrodsburg mark the initial shallow-water phase in an overall shoaling-upward, prograding ramp succession beginning with deep basinal clastic sequences of shales and turbidites (early middle Mississippian) and culminating with sabkha and shallow marine carbonate deposits (middle middle Mississippian). Grainstones composed of bryozoans and pelmatozoan bioclasts were deposited oN the lower shoreface of a southwestward-deepening ramp in southern Indiana. Lateral distribution of coarse-grained, well-winnowed,more » southwestward and downdip-trending carbonate sequences was controlled by the undulatory and digitate nature of the ramp. Primary intragranular and minor intergranual porosity was preserved as early marine phreatic cementation created a rigid framework of grains resistant to further solution compaction. Fine-grained euhedral dolomite within proximal wackestones and mudstones formed as the product of a paleohydrologic system composed of plumes of fresh water that extended down through grainstone bodies and formed a periperhal zone of mixed meteoric and marine phreatic waters. Later coarse sparry calcite cement within peripheral grainstones resulted from burial cementation. Lack of significant water-filled porosity off the depositional structure indicates that the early presence of hydrocarbons within the primary pore system inhibited further cementation.« less

Characteristics, stratigraphic architecture, and time framework of multi-order mixed siliciclastic and carbonate depositional sequences, outcropping Cisco Group (Late Pennsylvanian and Early Permian), Eastern Shelf, north-central Texas, USA

NASA Astrophysics Data System (ADS)

Yang, Wan; Kominz, Michelle A.

2003-01-01

The Cisco Group on the Eastern Shelf of the Midland Basin is composed of fluvial, deltaic, shelf, shelf-margin, and slope-to-basin carbonate and siliciclastic rocks. Sedimentologic and stratigraphic analyses of 181 meter-to-decimeter-scale depositional sequences exposed in the up-dip shelf indicated that the siliciclastic and carbonate parasequences in the transgressive systems tracts (TST) are thin and upward deepening, whereas those in highstand systems tracts (HST) are thick and upward shallowing. The sequences can be subdivided into five types on the basis of principal lithofacies, and exhibit variable magnitude of facies shift corresponding to variable extents of marine transgression and regression on the shelf. The sequence stacking patterns and their regional persistence suggest a three-level sequence hierarchy controlled by eustasy, whereas local and regional changes in lithology, thickness, and sequence type, magnitude, and absence were controlled by interplay of eustasy, differential shelf subsidence, depositional topography, and pattern of siliciclastic supply. The outcropping Cisco Group is highly incomplete with an estimated 6-11% stratigraphic completeness. The average duration of deposition of the major (third-order) sequences is estimated as 67-102 ka on the up-dip shelf and increases down dip, while the average duration of the major sequence boundaries (SB) is estimated as 831-1066 ka and decreases down dip. The nondepositional and erosional hiatus on the up-dip shelf was represented by lowstand deltaic systems in the basin and slope.

Alluvial lithofacies recognition in a humid-tropical setting

NASA Astrophysics Data System (ADS)

Darby, Dennis A.; Whittecar, G. Richard; Barringer, Richard A.; Garrett, Jim R.

1990-05-01

Cobble gravel deposits in the Antigua Formation accumulated on a large alluvial fan or braid-plain west of the Cordillera Occidental in southwest Colombia. This formation was probably deposited during the Pleistocene in a very wet tropical climate (> 500 cm/yr rainfall). Fining-upwards sequences of clast-supported, imbricated boulders and cobbles dominate with maximum clast sizes between 30 and 300 cm. The sand matrix in the Antigua gravels and the minor (⩽ 10%) sand facies are weathered to clay at depths of up to 20 m. The sand facies contains abundant drift logs and leaf mats. Except for the absence of debris flows and the very coarse nature of the gravel, the Antigua gravels have lithofacies similar to the glacial outwash braid-plain in the proximal area of the Scott type model. Gravels and sands of the younger Panambi Formation were deposited by a braided stream that was smaller, confined by valley walls, and flowing at a lower gradient than the river that deposited the Antigua gravels. We recognize no sedimentologic characteristics of these deposits as diagnostic of a humid-tropical environment except for textural and compositional changes in matrix sediments caused by deep and rapid chemical weathering.

Sedimentology and stratigraphy of the Kanayut Conglomerate, central and western Brooks Range, Alaska; report of 1981 field season

USGS Publications Warehouse

Nilsen, T.H.; Moore, T.E.

1982-01-01

The Upper Devonian and Lower Mississippian(?) Kanayut Conglomerate forms a major stratigraphic unit along the crest of the Brooks Range of northern Alaska. It crops out for an east-west distance of about 900 km and a north-south distance of about 65 km. The Kanayut is wholly allochthonous and has probably been transported northward on a series of thrust plates. The Kanayut is as thick as 2,600 m in the east-central Brooks Range. It thins and fines to the south and west. The Kanayut forms the middle part of the allochthonous sequence of the Endicott Group, an Upper Devonian and Mississippian clastic sequence underlain by platform limestones of the Baird Group and overlain by platform limestone, carbonaceous shale, and black chert of the Lisburne Group. The Kanayut overlies the marine Upper Devonian Noatak Sandstone or, where it is missing, the marine Upper Devonian Hunt Fork Shale. It is overlain by the marine Mississippian Kayak Shale. The Kanayut Conglomerate forms the fluvial part of a large, coarse-grained delta that prograded to the southwest in Late Devonian time and retreated in Early Mississippian time. Four sections of the Kanayut Conglomerate in the central Brooks Range and five in the western Brooks Range were measured in 1981. The sections from the western Brooks Range document the presence of fluvial cycles in the Kanayut as far west as the shores of the Chukchi Sea. The Kanayut in this area is generally finer grained than it is in the central and eastern Brooks Range, having a maximum clast size of 3 cm. It is probably about 300 m thick. The upper and lower contacts of the Kanayut are gradational. The lower Kanayut contains calcareous, marine-influenced sandstone within channel deposits, and the upper Kanayut contains probable marine interdistributary-bay shale sequences. The members of the Kanayut Conglomerate cannot be differentiated in this region. In the central Brooks Range, sections of the Kanayut Conglomerate at Siavlat Mountain and Kakivilak Creek are typically organized into fining-upward fluvial cycles. The maximum clast size is about 3 cm in this area. The Kanayut in this region is 200-500 m thick and can be divided into the Ear Peak, Shainin Lake, and Stuver Members. The upper contact of the Kanayut with the Kayak Shale is very gradational at Kakivilak Creek and very abrupt at Siavlat Mountain. Paleocurrents from fluvial strata of the Kanayut indicate sediment transport toward the west and south in both the western and central Brooks Range. The maximum clast size distribution generally indicates westward fining from the Shainin Lake region.

Sequence for the Training of Eye-Hand Coordination Needed for the Organization of Handwriting Tasks

ERIC Educational Resources Information Center

Trester, Mary Fran

1971-01-01

Suggested is a sequence of 11 class activities, progressing from gross to fine motor skills, to assist the development of skills required to perform handwriting tasks successfully, for use particularly with children who lack fine motor control and eye-hand coordination. (KW)

Deposition and weathering of Asian dust in Korea

NASA Astrophysics Data System (ADS)

Jeong, G.

2013-12-01

Paleolithic stone artifacts in Korea typically occur in brown clay-silt (BCS) sequences. The origin and depositional environment of these sequences are important for reconstructing the paleoenvironment as well as for establishing chronologies of artifact-bearing stratigraphic units. We investigated four BCS-bearing sections in foothills and river and marine terraces in Korea by applying quantitative mineralogical, geochemical, microtextural, and K-Ar isotopic methods. In all four sections, the lower units are colluvial and fluvial deposits strongly influenced by diverse local lithology, whereas the upper units are characterized by BCS units. Mineralogical/geochemical compositions, grain sizes, and colors converge into common properties in the upper BCS units in all sections. These common properties are consistent with the eastward trends of increasing weathering degree and grain size fining throughout the loess-paleosol sections of the Chinese Loess Plateau (CLP). K-Ar detrital ages of the sections also converge upward into a narrow range similar to the age ranges of the loess and paleosols in the CLP. The top BCS unit in the Jeongok section, the thickest section, is underlain by an additionally weathered BCS unit, with strong red chroma indicating a change from warm to cold climate. We did not observe any clear evidence of climatic changes in other thinner sections, which may be due to a superposition of cold-stage accumulation and warm-stage deep weathering. The common properties of the BCSs in Korean sections and their relationship to the CLP loess and paleosols indicate widespread deposition of Asian dust and subsequent weathering in the late Quaternary, forming BCS sequences. In this respect, the BCS sequences investigated here are considered to be the additionally weathered equivalents of the CLP loess-paleosol sequences, having been exposed to the high annual precipitation of the Korean Peninsula. Given the wide distribution of BCS sequences at Paleolithic sites throughout the Peninsula, the findings of this study are important for the ongoing debate surrounding the depositional environments of the Paleolithic deposits, and provide a foundation for the establishment of the chronological framework of the Paleolithic artifact-bearing layers and lithic assemblages.

Deposition and weathering of Asian dust in Paleolithic sites, Korea

NASA Astrophysics Data System (ADS)

Jeong, Gi Young; Choi, Jeong-Heon; Lim, Hyoun Soo; Seong, Chuntaek; Yi, Seon Bok

2013-10-01

Paleolithic stone artifacts in Korea typically occur in brown clay-silt (BCS) sequences. The origin and depositional environment of these sequences are important for reconstructing the paleoenvironment as well as for establishing chronologies of artifact-bearing stratigraphic units. We investigated four BCS-bearing sections in foothills and river and marine terraces in Korea by applying quantitative mineralogical, geochemical, microtextural, and K-Ar isotopic methods. In all four sections, the lower units are colluvial and fluvial deposits strongly influenced by diverse local lithology, whereas the upper units are characterized by BCS units. Mineralogical/geochemical compositions, grain sizes, and colors converge into common properties in the upper BCS units in all sections. These common properties are consistent with the eastward trends of increasing weathering degree and grain size fining throughout the loess-paleosol sections of the Chinese Loess Plateau (CLP). K-Ar detrital ages of the sections also converge upward into a narrow range similar to the age ranges of the loess and paleosols in the CLP. The top BCS unit in the Jeongok section, the thickest section, is underlain by an additionally weathered BCS unit, with strong red chroma indicating a change from warm to cold climate. We did not observe any clear evidence of climatic changes in other thinner sections, which may be due to a superposition of cold-stage accumulation and warm-stage deep weathering. The common properties of the BCSs in Korean sections and their relationship to the CLP loess and paleosols indicate widespread deposition of Asian dust and subsequent weathering in the late Quaternary, forming BCS sequences. In this respect, the BCS sequences investigated here are considered to be the additionally weathered equivalents of the CLP loess-paleosol sequences, having been exposed to the high annual precipitation of the Korean Peninsula. Given the wide distribution of BCS sequences at Paleolithic sites throughout the Peninsula, the findings of this study are important for the ongoing debate surrounding the depositional environments of the Paleolithic deposits, and provide a foundation for the establishment of the chronological framework of the Paleolithic artifact-bearing layers and lithic assemblages.

Ramp Creek and Harrodsburg Limestones: A shoaling-upward sequence with storm-produced features in southern Indiana, U.S.A.. Carbonate petrology seminar, Indiana University

NASA Astrophysics Data System (ADS)

1987-05-01

Most previously described examples of storm-produced stratification have been reported from siliciclastic rocks. However, such features should also be common in carbonate rocks. The Mississippian (Valmeyeran) Ramp Creek and Harrodsburg Limestones, deposited on the east margin of the Illinois Basin on top of the Borden Delta, contain storm-produced features. The dolomitic, geode-bearing Ramp Creek Limestone contains muddying-upward sequences, commonly with scoured bases overlain by grainstones, packstones, wackestones, and burrowed mudstones. These sequences are similar to hummocky sequences formed by storm waves below fair-weather wave base. The middle portion of the section including the upper Ramp Creek and lower Harrodsburg Limestones contains dolomitized mud lenses of uncertain origin. They may have formed by the baffling effect of bryozoans and/or unpreserved algae. The Harrodsburg is gradational with the Ramp Creek and consists predominantly of grainstones and packstones deposited in shallower water. Low-angle cross-stratification and truncation surfaces suggest a foreshore depositional environment for the Harrodsburg. Neither formation contains any indication of supratidal deposition as has been previously suggested. Open marine conditions during deposition of both formations are indicated by the fauna which includes crinoids, bryozoans, brachiopods, corals, ostracods, echinoids, trilobites, molluscs, fish (sharks), and trace fossils.

Solute transport with time-variable flow paths during upward and downward flux in a heterogeneous unsaturated porous medium

NASA Astrophysics Data System (ADS)

Cremer, Clemens; Neuweiler, Insa; Bechtold, Michel; Vanderborght, Jan

2014-05-01

To acquire knowledge of solute transport through the unsaturated zone in the shallow subsurface is decisive to assess groundwater quality, nutrient cycling or to plan remediation strategies. The shallow subsurface is characterized by structural heterogeneity and strongly influenced by atmospheric conditions. This leads to changing flow directions, strong temporal changes in saturation and heterogeneous water fluxes during infiltration and evaporation events. Recent studies (e.g. Lehmann and Or, 2009; Bechtold et al.,2011) demonstrated the importance of lateral flow and solute transport during evaporation conditions (upward flux). The heterogeneous structure in these studies was constructed using two types of sand with strong material contrasts and arranged in parallel with a vertical orientation. Lateral transport and redistribution of solute from coarse to fine media was observed deeper in the soil column and from fine to coarse close to the soil surface. However, if boundary conditions are reversed due to precipitation, the flow field is not necessarily reversed in the same manner, resulting in entirely different transport patterns for downward and upward flow. Therefore, considering net-flow rates alone is misleading when describing transport under those conditions. In this contribution we analyze transport of a solute in the shallow subsurface to assess effects resulting from the temporal change of heterogeneous soil structures due to dynamic flow conditions. Two-dimensional numerical simulations of unsaturated flow and transport are conducted using a coupled finite volume and random walk particle tracking algorithm to quantify solute transport and leaching rates. Following previous studies (Lehmann and Or, 2009; Bechtold et al., 2011), the chosen domain is composed of two materials, coarse and fine sand, arranged in parallel with a vertical orientation. Hence, one sharp interface of strong material heterogeneity is induced. During evaporation both sands are assumed to stay under liquid-flow dominated evaporation conditions ("stage 1"). Simulations considering dynamic (infiltration-evaporation) and steady (solely infiltration) boundary conditions are carried out. The influence of dynamic boundary conditions (intensity and duration of precipitation and evaporation events) is examined in a multitude of simulations. If flow rates smaller than the saturated hydraulic conductivity of both materials are chosen to be applied as boundary condition, simulation results indicate that the flow field within the domain is exactly reversed. However, if applied flow rates exceed the saturated hydraulic conductivity of one material, the flow field is not just reversed, but different flow paths during downward and upward flow are observed. Results show the tendency of faster solute leaching under dynamic boundary conditions compared to steady infiltration conditions with the same net-infiltration rate. We use a double domain transport method as an upscaled model to reproduce vertically averaged concentration profiles with net flux only and compare the model parameters for information about flow dynamics and soil heterogeneity.

Tsunami Stratigraphy in a Coastal Salt Pond, St. Croix, US Virgin Islands

NASA Astrophysics Data System (ADS)

Russell, P.; Browning, T. N.; Brooks, G.; Larson, R. A.; Cook, A.; Sawyer, D. E.

2017-12-01

The Caribbean has significant exposure to tsunamis from multiple sources, such as earthquakes, volcanoes, and landslides. Due to the limited historical record in the region, paleotsunami deposits provide important information about the size, location, and sources of these events. In turn, these data inform the public and policymakers about the tsunamigenic threat to their communities. A key challenge is that tsunami deposits are often poorly preserved. However, a good candidate for high preservation potential are coastal salt ponds commonly found on the perimeter of tropical islands. The US Virgin Islands has both high susceptibility to tsunamis and large, low lying salt ponds. The most prominent historical example of a tsunami in the US Virgin Islands is the 1867 event which caused widespread devastation throughout the region, including Puerto Rico. One of the hardest hit locations was Frederiksted, on the western end of St. Croix, US Virgin Islands with 7m runups that beached the USS Monongahela. Frederiksted is also in close proximity to a large coastal salt pond. We targeted this, and older, events by collecting a series of sediment cores at four sites in the salt pond during a summer 2017 field campaign. At each location we acquired a 3" aluminum core and a 4" acrylic companion core to core refusal, which most often occurred at a impenetrable horizon. Maximum core recovery was .79m and the average was .54m. Each 4" core was extruded in 1cm intervals and used to determine grain size, total carbon content, and age dating via radioisotope dating. The 3" core was scanned in a X-Ray CT Lab, split, described, and samples from key layers were targeted for detailed sedimentological analyses. The defining stratigraphic sequence is fine-grained muds interspersed with coarse-grained units that exhibit a fining-upwards trend and contained a variety of marine debris, which we infer to represent tsunami or tropical storm event deposits. However, each core did not exhibit the same stratigraphic sequence, suggesting that core location is highly important to accurately establishing the tsunami record. Further analyses will constrain age and stratigraphic control.

Development of low-ash, planar peat swamps in an alluvial-plain setting: The no. 5 Block beds (westphalian D) of southern West Virginia

DOE Office of Scientific and Technical Information (OSTI.GOV)

Staub, J.R.; Richards, B.K.

1993-07-01

Coals from the No. 5 Block coal beds (Westphalian D) of the central Appalachian basin are noted for their blocky, dull character and their low ash and low sulfur content. The beds are multiple benched, with rock partings separating benches. Individual benches have limited lateral extent and, where thick, are dominated by bright, high-ash coal at the base and dull, low-ash coal in the upper parts. The duller coals contain more exinite-group and inertinite-group macerals than the brighter coals. These coal beds are encased in sandstone units dominated by fining-upward sequences. The overall depositional setting is an alluvial-plain environment withmore » northwest-flowing channels spaced approximately 20 km apart. The channels were flanked by clastic swamps about 7 km wide. Low-ash peat accumulated in areas of the flood plain most distant from the channels. These peat-accumulating swamps were about 8 km across. In a few instances low-frequency flood events introduced fine siliciclastic sediment into the peat swamps, depositing a thin layer of sediment on top of the peat. This sediment layer is thicker where the underlying coal is the thickest. These thick coal areas are topographically lower than surrounding coal areas. This relationship between coal thickness, parting thickness, and topography indicates that these peat swamps were planar at the time of deposition. Individual coal benches contain abundant preserved cellular tissue (telocollinite, semifusinite, and fusinite) at most locations, suggesting that robust vegetation was widespread in the swamps and that the morphology was planar. The high concentrations of exinite-group an inertinite-group macerals in the upper parts of benches resulted from selective decomposition and oxidation of the peat in subaerial and aquatic planar-swamp environments.« less

Three magnetic reversals recorded in an 80-m organic-rich core from a sinkhole east of Tampa, FL

DOE Office of Scientific and Technical Information (OSTI.GOV)

McCartan, L.; Rubin, M.; Liddicoat, J.C.

1994-03-01

Preliminary analysis of a continuous 80-m core from a phosphate mines at Bartow, Fla., indicates as many as three magnetically reversed and five normal sections and five upward-fining depositional sequences. The paleomagnetic data are based on analysis of 16 samples; 100 additional samples have been taken for more detailed analysis. The authors estimate the maximum age to be 1.1--2.6 Ma. The core is composed of massive to faintly laminated beds of black to dark-brown, organic-rich, fine quartz sand and silt, kaolinitic and organic clay, and peat, Only the top meter is within the 40 Ka range of [sup 14]C; amore » sample at 8.5 m yielded an age estimate close to 350,000 years, the limit of the open-system U/Th dating technique. Rates of deposition are 2--7.5 cm/1,000 years, which is much slower than rates in late Quaternary lakes elsewhere in Florida. There is no clear relation between the magnetic stratigraphy and the depositional stratigraphy. The authors assume that most of the sand was derived from dissolved limestone around the sinkhole, but some of the sand as well as the silt and clay may be windborne. Textural variations may be coincident with differences in rainfall, and this concept will be investigated through pollen analysis of approximately 800 samples. The one sample examined so far is from the bottom of the core, and it has an equivocal biostratigraphic age. The high grass pollen content indicates a drier climate than at present; it is from a long interval of peat with sand, which is typically windborne in dry climates.« less

Arbuscular mycorrhizal fungal community composition affected by original elevation rather than translocation along an altitudinal gradient on the Qinghai-Tibet Plateau

NASA Astrophysics Data System (ADS)

Yang, Wei; Zheng, Yong; Gao, Cheng; Duan, Ji-Chuang; Wang, Shi-Ping; Guo, Liang-Dong

2016-11-01

Elucidating arbuscular mycorrhizal (AM) fungal responses to elevation changes is critical to improve understanding of microbial function in ecosystems under global asymmetrical climate change scenarios. Here we examined AM fungal community in a two-year reciprocal translocation of vegetation-intact soil blocks along an altitudinal gradient (3,200 m to 3,800 m) in an alpine meadow on the Qinghai-Tibet Plateau. AM fungal spore density was significantly higher at lower elevation than at higher elevation regardless of translocation, except that this parameter was significantly increased by upward translocation from original 3,200 m to 3,400 m and 3,600 m. Seventy-three operational taxonomic units (OTUs) of AM fungi were recovered using 454-pyrosequencing of 18S rDNA sequences at a 97% sequence similarity. Original elevation, downward translocation and upward translocation did not significantly affect AM fungal OTU richness. However, with increasing altitude the OTU richness of Acaulosporaceae and Ambisporaceae increased, but the OTU richness of Gigasporaceae and Glomeraceae decreased generally. The AM fungal community composition was significantly structured by original elevation but not by downward translocation and upward translocation. Our findings highlight that compared with the short-term reciprocal translocation, original elevation is a stronger determinant in shaping AM fungal community in the Qinghai-Tibet alpine meadow.

Arbuscular mycorrhizal fungal community composition affected by original elevation rather than translocation along an altitudinal gradient on the Qinghai-Tibet Plateau.

PubMed

Yang, Wei; Zheng, Yong; Gao, Cheng; Duan, Ji-Chuang; Wang, Shi-Ping; Guo, Liang-Dong

2016-11-09

Elucidating arbuscular mycorrhizal (AM) fungal responses to elevation changes is critical to improve understanding of microbial function in ecosystems under global asymmetrical climate change scenarios. Here we examined AM fungal community in a two-year reciprocal translocation of vegetation-intact soil blocks along an altitudinal gradient (3,200 m to 3,800 m) in an alpine meadow on the Qinghai-Tibet Plateau. AM fungal spore density was significantly higher at lower elevation than at higher elevation regardless of translocation, except that this parameter was significantly increased by upward translocation from original 3,200 m to 3,400 m and 3,600 m. Seventy-three operational taxonomic units (OTUs) of AM fungi were recovered using 454-pyrosequencing of 18S rDNA sequences at a 97% sequence similarity. Original elevation, downward translocation and upward translocation did not significantly affect AM fungal OTU richness. However, with increasing altitude the OTU richness of Acaulosporaceae and Ambisporaceae increased, but the OTU richness of Gigasporaceae and Glomeraceae decreased generally. The AM fungal community composition was significantly structured by original elevation but not by downward translocation and upward translocation. Our findings highlight that compared with the short-term reciprocal translocation, original elevation is a stronger determinant in shaping AM fungal community in the Qinghai-Tibet alpine meadow.

Arbuscular mycorrhizal fungal community composition affected by original elevation rather than translocation along an altitudinal gradient on the Qinghai-Tibet Plateau

PubMed Central

Yang, Wei; Zheng, Yong; Gao, Cheng; Duan, Ji-Chuang; Wang, Shi-Ping; Guo, Liang-Dong

2016-01-01

Elucidating arbuscular mycorrhizal (AM) fungal responses to elevation changes is critical to improve understanding of microbial function in ecosystems under global asymmetrical climate change scenarios. Here we examined AM fungal community in a two-year reciprocal translocation of vegetation-intact soil blocks along an altitudinal gradient (3,200 m to 3,800 m) in an alpine meadow on the Qinghai-Tibet Plateau. AM fungal spore density was significantly higher at lower elevation than at higher elevation regardless of translocation, except that this parameter was significantly increased by upward translocation from original 3,200 m to 3,400 m and 3,600 m. Seventy-three operational taxonomic units (OTUs) of AM fungi were recovered using 454-pyrosequencing of 18S rDNA sequences at a 97% sequence similarity. Original elevation, downward translocation and upward translocation did not significantly affect AM fungal OTU richness. However, with increasing altitude the OTU richness of Acaulosporaceae and Ambisporaceae increased, but the OTU richness of Gigasporaceae and Glomeraceae decreased generally. The AM fungal community composition was significantly structured by original elevation but not by downward translocation and upward translocation. Our findings highlight that compared with the short-term reciprocal translocation, original elevation is a stronger determinant in shaping AM fungal community in the Qinghai-Tibet alpine meadow. PMID:27827400

Recent high-energy marine events in the sediments of Lagoa de Óbidos and Martinhal (Portugal): recognition, age and likely causes

NASA Astrophysics Data System (ADS)

Costa, P. J. M.; Leroy, S. A. G.; Dinis, J. L.; Dawson, A. G.; Kortekaas, S.

2012-05-01

A key issue in coastal hazards research is the need to distinguish sediments deposited by past extreme storms from those of past tsunamis. This study contributes to this aim by investigating patterns of sedimentation associated with extreme coastal flood events, in particular, within the Lagoa de Óbidos (Portugal). The recent stratigraphy of this coastal lagoon was studied using a wide range of techniques including visual description, grain-size analysis, digital and x-ray photography, magnetic susceptibility and geochemical analysis. The sequence was dated by 14C, 210Pb and Optically Stimulated Luminescence. Results disclose a distinctive coarser sedimentary unit, within the top of the sequence studied, and shown in quartz sand by the enrichment of elements with marine affinity (e.g., Ca and Na) and carbonates. The unit fines upwards and inland, thins inland and presents a sharp erosive basal contact. A noticeable post-event change in the sedimentary pattern was observed. The likely agent of sedimentation is discussed here and the conceivable association with the Great Lisbon tsunami of AD 1755 is debated, while a comparison is attempted with a possibly synchronous deposit from a tsunami in Martinhal (Algarve, Portugal). The possibility of a storm origin is also discussed in the context of the storminess of the western Portuguese coast and the North Atlantic Oscillation. This study highlights certain characteristics of the sedimentology of the deposits that may have a value in the recognition of extreme marine inundation signatures elsewhere in the world.

Low-accommodation detrital apron alongside a basement uplift, Pennsylvanian of Midcontinent North America

NASA Astrophysics Data System (ADS)

Joeckel, R. M.; Nicklen, B. L.; Carlson, M. P.

2007-04-01

The northern end of the 650-km-long Nemaha Uplift (Nebraska and Kansas, USA) is an important example of basin-margin sedimentation in the North American Midcontinent. An apron of coarse, basal Pennsylvanian arkosic clastic sediments (BPC) was deposited on the flanks of the uplift while marine cyclothems were encroaching from the east. Small-scale fining-upward intervals, many with demonstrably erosional bases, dominate the BPC and are interpreted as overridingly fluvial in origin. Weak paleosols, desiccation cracks, and reddened intervals in the BPC record episodic subaerial exposure. Multiple, burrowed horizons and heterolithic strata of probable tidal origin and rare marine fossils also indicate episodic marine influence. The BPC appear to have been deposited as a thin apron of coalesced, alluvial fans and fan deltas. Deposition of the BPC occurred during the waning of uplift and subsequent quiescence. The comparative thinness and large-scale packaging of the BPC are compatible with the controlling effects of relict relief, regional subsidence, and eustasy, rather than ongoing, major vertical displacements along active faults. A strong autocyclic influence on sedimentation is evidenced by stacked fining-upward intervals of poorly-sorted conglomerates, sandstones, and sandy mudstones. Correlations demonstrate that the accumulation of the BPC took place over more than seven major sea-level cycles, beginning in Cherokee Group times (middle Moscovian/middle Pennsylvanian) and ending only when the eroded uplift was inundated and buried by marine cyclothems. On the basis of local correlations with marine cyclothems, and using black phosphatic shales (so-called "core shales" of Heckel, P.H., 1986. Sea-level surve for Pennsylvanian eustatic marine transgressive-regressive depositional cycles along Midcontinent outcrop belt, North America: Geology 14, 330-334., Heckel, P.H., 1994. Evaluation of evidence for glacio-eustatic control over marine Pennsylvanian cyclothems in North America and correlation of possible tectonic effects. In: Dennison, J.M., Ettensohn, F.R. (Eds.), Tectonic and Eustatic Controls on Sedimentary Cycles, SEPM Concepts in Sedimentology and Paleontology No. 4, pp. 5-87) as marker beds, we speculate that the BPC exist in backstepping sequences and/or parasequences alongside the flanks of the Nemaha Uplift. The BPC are lithologically comparable to contemporaneous deposits alongside the Ancestral Rockies, Amarillo-Wichita Uplift, and other buried basement highs in North America. Nonetheless, the BPC are an order of magnitude thinner, are dominantly retrogradational, rather than progradational, and their occurrence was not associated with major displacements along basin-bounding faults. In this manner, the BPC are a useful example of low-accommodation, eustasy-dominated, coarse-grained terrigenous clastic deposition around an uplifted basement block.

Facies and Depositional History of Arc-Related, Deep-Marine Volcaniclastic Rocks in Core Recovered on International Ocean Discovery Program Expedition 351, Philippine Sea

NASA Astrophysics Data System (ADS)

Johnson, K. E.; Waldman, R.; Marsaglia, K. M.

2016-12-01

The Izu-Bonin-Mariana (IBM) Arc System, south of Japan, hosts a multitude of active and extinct (remnant) volcanic arcs and associated basins partly filled with volcanic sediment. Core extracted adjacent to the proto-IBM arc (Kyushu-Palau Ridge; KPR), in the Amami-Sankaku Basin (ASB) during International Ocean Discovery Program (IODP) Expedition 351, contains an incredibly well-preserved record of backarc sedimentation resulting from changing tectonic regimes during arc development and decline. Approximately 1000 meters of Eocene to Oligocene volcaniclastic sedimentary rocks were analyzed via shipboard core photos, core descriptions, and thin sections with the intention of understanding the depositional history at this site. A database of stratigraphic columns, 539 section and 147 core summaries, was created to display grain size trends, sedimentary structures, bedding characteristics, and facies changes. Individual depositional events were classified using existing and slightly modified classification schemes for muddy, sandy, and gravel-rich gravity flow deposits, as well as muddy deposits and tuffs. Downhole trends show repeating coarsening-upward intervals that grade from fine-grained turbidites to coarser turbidites and debrites. These trends indicate how the active depositional systems evolved upsection as the arc matured. Following arc initiation, facies deposited were primarily mud-rich; these coarsened-upward into 12 stacked sequences of submarine lobe and channel facies with sediment from one or more volcanic sources. These are interpreted to represent the building of the arc edifice that began 41 Ma. Four distinct periods of coarse lobe accumulation created a thick submarine fan over a period of nearly 13 million years. An abrupt shift to muddy turbidites at 30 Ma represents the onset of rifting of the paleo-IBM arc as backarc spreading in the Shikoku Basin was initiated and volcaniclastic supply to the ASB waned with formation of the KPR remnant arc.

Detection of Propagating Fast Sausage Waves through Detailed Analysis of a Zebra-pattern Fine Structure in a Solar Radio Burst

NASA Astrophysics Data System (ADS)

Kaneda, K.; Misawa, H.; Iwai, K.; Masuda, S.; Tsuchiya, F.; Katoh, Y.; Obara, T.

2018-03-01

Various magnetohydrodynamic (MHD) waves have recently been detected in the solar corona and investigated intensively in the context of coronal heating and coronal seismology. In this Letter, we report the first detection of short-period propagating fast sausage mode waves in a metric radio spectral fine structure observed with the Assembly of Metric-band Aperture Telescope and Real-time Analysis System. Analysis of Zebra patterns (ZPs) in a type-IV burst revealed a quasi-periodic modulation in the frequency separation between the adjacent stripes of the ZPs (Δf ). The observed quasi-periodic modulation had a period of 1–2 s and exhibited a characteristic negative frequency drift with a rate of 3–8 MHz s‑1. Based on the double plasma resonance model, the most accepted generation model of ZPs, the observed quasi-periodic modulation of the ZP can be interpreted in terms of fast sausage mode waves propagating upward at phase speeds of 3000–8000 km s‑1. These results provide us with new insights for probing the fine structure of coronal loops.

Rapid Fine Conformational Epitope Mapping Using Comprehensive Mutagenesis and Deep Sequencing*

PubMed Central

Kowalsky, Caitlin A.; Faber, Matthew S.; Nath, Aritro; Dann, Hailey E.; Kelly, Vince W.; Liu, Li; Shanker, Purva; Wagner, Ellen K.; Maynard, Jennifer A.; Chan, Christina; Whitehead, Timothy A.

2015-01-01

Knowledge of the fine location of neutralizing and non-neutralizing epitopes on human pathogens affords a better understanding of the structural basis of antibody efficacy, which will expedite rational design of vaccines, prophylactics, and therapeutics. However, full utilization of the wealth of information from single cell techniques and antibody repertoire sequencing awaits the development of a high throughput, inexpensive method to map the conformational epitopes for antibody-antigen interactions. Here we show such an approach that combines comprehensive mutagenesis, cell surface display, and DNA deep sequencing. We develop analytical equations to identify epitope positions and show the method effectiveness by mapping the fine epitope for different antibodies targeting TNF, pertussis toxin, and the cancer target TROP2. In all three cases, the experimentally determined conformational epitope was consistent with previous experimental datasets, confirming the reliability of the experimental pipeline. Once the comprehensive library is generated, fine conformational epitope maps can be prepared at a rate of four per day. PMID:26296891

High-density genetic map using whole-genome re-sequencing for fine mapping and candidate gene discovery for disease resistance in peanut

USDA-ARS?s Scientific Manuscript database

High-density genetic linkage maps are essential for fine mapping QTLs controlling disease resistance traits, such as early leaf spot (ELS), late leaf spot (LLS), and Tomato spotted wilt virus (TSWV). With completion of the genome sequences of two diploid ancestors of cultivated peanut, we could use ...

Fine tangled pili expressed by Haemophilus ducreyi are a novel class of pili.

PubMed Central

Brentjens, R J; Ketterer, M; Apicella, M A; Spinola, S M

1996-01-01

Haemophilus ducreyi synthesizes fine, tangled pili composed predominantly of a protein whose apparent molecular weight is 24,000 (24K). A hybridoma, 2D8, produced a monoclonal antibody (MAb) that bound to a 24K protein in H. ducreyi strains isolated from diverse geographic locations. A lambda gt11 H. ducreyi library was screened with MAb 2D8. A 3.5-kb chromosomal insert from one reactive plaque was amplified and ligated into the pCRII vector. The recombinant plasmid, designated pHD24, expressed a 24K protein in Escherichia coli INV alpha F that bound MAb 2D8. The coding sequence of the 24K gene was localized by exonuclease III digestion. The insert contained a 570-bp open reading frame, designated ftpA (fine, tangled pili). Translation of ftpA predicted a polypeptide with a molecular weight of 21.1K. The predicted N-terminal amino acid sequence of the polypeptide encoded by ftpA was identical to the N-terminal amino acid sequence of purified pilin and lacked a cleavable signal sequence. Primer extension analysis of ftpA confirmed the lack of a leader peptide. The predicted amino acid sequence lacked homology to known pilin sequences but shared homology with the sequences of E. coli Dps and Treponema pallidum antigen TpF1 or 4D, proteins which associate to form ordered rings. An isogenic pilin mutant, H. ducreyi 35000ftpA::mTn3(Cm), was constructed by shuttle mutagenesis and did not contain pili when examined by electron microscopy. We conclude that H. ducreyi synthesizes fine, tangled pili that are composed of a unique major subunit, which may be exported by a signal sequence independent mechanism. PMID:8550517

The Stratigraphy and Lithofacies of the Paleoproterozoic Volcaniclastic Sequences in the Cape Three Points Area- Akodda section of the Southern in Ashanti Belt in the Birimian of southwest Ghana

NASA Astrophysics Data System (ADS)

Yoshimaru, S.; Kiyokawa, S.; Ito, T.; Ikehara, M.; Nyame, F. K.; Tetteh, G. M.

2015-12-01

The Paleoproterozoic Era is thought to have experienced one of the most significant changes in earth's environment during earth history. Early continents started to diverge and collide accompanied by first major oxidation of the atmosphere-oceanic system known as the Great Oxidation Environment (GOE). Due to their well-preserved oceanic sedimentary sequences, Paleoproterozoic belts are usually good targets for studies on the history of earth's past environment. In addition, these belts provide great help to understand the nature of the Paleoproterozoic deeper oceanic environments. Birimian greenstone belt in southwestern Ghana is likely to have made up of subduction of oceanic basin to form a volcanic island arc. Birimian rocks are separated by nonconformity from the Tarkwaian Group which is a younger paleoplacer deposit (Perrouty et al., 2012). The Birimian is made up of island-arc volcanic rocks; foreland basin made up of shale, sandstone, quartzite and turbidities derived from 2.17 Ga granite intrusions during Birimian volcanism. In this study, we focused on the coastal area around Cape Three Points at the southernmost part of the Ashanti (Axim-Konongo) belt in Ghana. In the eastern part of the area, excellently preserved Paleoprotorozoic deeper oceanic sedimentary sequences extensively outcrop for over 4km stretch. This volcano-sedimentary sequence has been affected by greenschist facies metamorphism. Structurally, this region preserves S1 cleavage and asymmetrical synform with west vergence and S0 younging to the east. Provisional stratigraphy is very continuous up to more than 2000m thick and, in addition, suggests at least four different fining upward sequences in the area to the east and west of Atwepo, west of Kwetakora and Akodda. These sub-sequences are mainly composed of volcaniclasitc, sandstone, black shale and rare volcanics such as pillow basalt or massive volcanic lava. In other words, this continuous sequence suggests distal submarine volcaniclastic rocks in an oceanic island arc around the West African Craton. Preliminary δ13C analysis gave values of -23.7~ -36.5 ‰ for black shale occupying the middle to upper part of the whole section. The very light carbon isotope ratios suggest deposition of the black shale under highly euxinic conditions like today's Black sea.

New Investigations of the Gow Lake Impact Structure, Saskatchewan, Canada: Impact Melt Rocks, Astronaut Training, and More

NASA Astrophysics Data System (ADS)

Osinski, G. R.; Singleton, A. C.; Ozaruk, A.; Hansen, J. R.

2012-03-01

New investigations of the Gow Lake impact structure has revealed an almost complete sequence of impactites from the crater floor upward through a series of melt-free and melt-bearing rocks. This research involved an astronaut training component.

Paleo-environmental interpretation of Paleocene Sepultura Formation in type locality, Mesa La sepultura, Baja California, Mexico

DOE Office of Scientific and Technical Information (OSTI.GOV)

Arzate-Hernandez, L.; Tellezduarte, M.

1988-03-01

The Sepultura Formation in its type locality consists of two major lithostratigraphic units. The basal A unit overlies the Cretaceous Rosario Formation. It consists predominantly of fine-grained, poorly consolidated sandstones; some conglomerates; and thin beds of well-consolidated lenticular fossiliferous sandstones, which show some cyclic sedimentation. The poorly consolidated sandstones contain glauconitic layers; abundant shark teeth, benthic forams, and ostracods; and sparse mollusks, brachiopods, and Ophiomorpha-like trace fossils. These faunas indicate deposition in nearshore shallow waters. The interbedded consolidated lenticular sandstones probably indicate storm-induced deposition below wave base. This mechanism is assumed to be responsible for the high concentration of fossilsmore » consisting predominantly of unworn molluscan shells, scaphopods, echinoid spines, corals, and forams. In places, the elongated shells of Turritella pachecoensis show a preferential orientation to the southwest. At the top of the unit, a poorly fossiliferous red conglomerate indicates deltaic conditions. Overlying the conglomerate is unit B which shows a change in the sedimentary environment. It consists of a calcareous shallowing upward sequence of nodular to massive algal limestone with caliche at top. The microfossils of this unit show glauconitization in places, and consist, in addition to algal fragments, of forams, microscopic mollusks, and some ostracods and calcispherules from shallow waters (less than 30 m deep).« less

A 600-year-long stratigraphic record of tsunamis in south-central Chile

USGS Publications Warehouse

Hong, Isabel; Dura, Tina; Ely, Lisa L.; Horton, Benajamin P.; Nelson, Alan R.; Cisternas, Marco; Nikitina, Daria; Wesson, Robert L.

2017-01-01

The stratigraphy within coastal river valleys in south-central Chile clarifies and extends the region’s history of large, earthquakes and accompanying tsunamis. Our site at Quidico (38.1°S, 73.3°W) is located in an overlap zone between ruptures of magnitude 8–9 earthquakes in 1960 and 2010, and, therefore, records tsunamis originating from subduction-zone ruptures north and south of the city of Concepción. Hand-dug pits and cores in a 3-m-thick sequence of freshwater peat in an abandoned meander (a little-examined depositional environment for tsunami deposits) and exposures along the Quidico River show five sand beds that extend as much as 1.2 km inland. Evidence for deposition of the beds by tsunamis includes tabular sand beds that are laterally extensive (>100 m), well sorted, fine upward, have sharp lower contacts, and contain diatom assemblages dominated by brackish and marine taxa. Using eyewitness accounts of tsunami inundation, 137Cs analyses, and 14C dating, we matched the upper four sand beds with historical tsunamis in 2010, 1960, 1835, and 1751. The oldest prehistoric bed dates to 1445–1490 CE and correlates with lacustrine and coastal records of similar-aged earthquakes and tsunamis in south-central Chile.

A sedimentary-based history of hurricane strikes on the southern Caribbean coast of Nicaragua

NASA Astrophysics Data System (ADS)

McCloskey, Terrence Allen; Liu, Kam-biu

2012-11-01

Multi-millennial hurricane landfall records from the western North Atlantic indicate that landfall frequency has varied dramatically over time, punctuated by multi-centennial to millennial scale periods of hyperactivity. We extend the record geographically by presenting a paleostrike record inferred from a four-core transect from a marsh on the Caribbean coast of Nicaragua. Fossil pollen indicates that the site was a highly organic wetland from ~ 5400-4900 cal yr BP, at which time it became a shallow marine lagoon until ~ 2800 cal yr BP when it transitioned back into swamp/marsh, freshening over time, with the present fresh-to-brackish Typha marsh developing over the very recent past. Hurricane Joan, 1988, is recorded as a distinctive light-colored sand-silt-clay layer across the top of the transect, identifiable by abrupt shifts in color from the dark marsh deposits, increased grain size, and two upward-fining sequences, which are interpreted as representing the storm's traction and suspension loads. The six layers identified as hurricane-generated display temporal clustering, featuring a marked increase in landfall frequency ~ 800 cal yr BP. This pattern is anti-phase with the activity pattern previously identified from the northern Caribbean and the Atlantic coast of North America, thereby opposing the view that hyperactivity occurs simultaneously across the entire basin.

Orienting numbers in mental space: horizontal organization trumps vertical.

PubMed

Holmes, Kevin J; Lourenco, Stella F

2012-01-01

While research on the spatial representation of number has provided substantial evidence for a horizontally oriented mental number line, recent studies suggest vertical organization as well. Directly comparing the relative strength of horizontal and vertical organization, however, we found no evidence of spontaneous vertical orientation (upward or downward), and horizontal trumped vertical when pitted against each other (Experiment 1). Only when numbers were conceptualized as magnitudes (as opposed to nonmagnitude ordinal sequences) did reliable vertical organization emerge, with upward orientation preferred (Experiment 2). Altogether, these findings suggest that horizontal representations predominate, and that vertical representations, when elicited, may be relatively inflexible. Implications for spatial organization beyond number, and its ontogenetic basis, are discussed.

Single-Grain OSL Dating of Early Middle Palaeolithic Deposits at Cuesta de la Bajada, Ebro Basin, Spain

NASA Astrophysics Data System (ADS)

Arnold, L. J.; Demuro, M.; Santonja, M.; Perez-Gonzalez, A.

2012-12-01

The open-air site of Cuesta de la Bajada comprises a 2-2.5 m-thick sequence of fluvial-lacustrine sediments inset into the +50-60 m terrace deposits preserved along the south-eastern margins of the Alfambra river valley, Teruel, Spain. The main archaeological horizons lie ~20 m above the present-day river level and consists of an upward-fining sequence of massive fluvial silts and fine sands with dispersed gravels, detritic marls and shales that collectively overlie a series of planar bedded fluvial gravels. These units have yielded ~3000 lithic artefacts displaying reduction techniques characteristic of an early Middle Palaeolithic techno-complex, as well as a multitude of faunal remains indicative of a late Middle Pleistocene origin. The paucity of open-air Palaeolithic sites in the interior eastern sector of the Iberian Peninsula, and the relatively low number of documented early Middle Palaeolithic archives in this region, means that Cuesta de la Bajada is of key importance for understanding the coexistence/transition of Iberian Acheulean and Mousterian techno-complexes during the Middle Pleistocene period. Establishing reliable absolute chronologies at Cuesta de la Bajada remains essential for understanding the regional significance of this site. In an attempt to redress the existing chronological uncertainty we are undertaking an interdisciplinary dating study of the Middle Palaeolithic deposits using OSL dating, ESR/U-series dating of teeth and ESR dating of sedimentary quartz. Here we present results obtained using quartz single-grain OSL dating of 4 samples collected from a 7 m vertical profile bracketing the archaeological horizons. 2 samples were collected from the archaeology-bearing silt and fine sand horizons, while the remaining samples were obtained from well-bedded fine-sands and silts 3.5 m above and 3 m below the main excavation. The measured quartz grains are characterised by relatively bright OSL signals and typically display dose-response curves with very high saturation limits. The latter offers the advantage of extending the age range over which single-grain techniques can be applied in this Middle Pleistocene context. Dose-recovery tests performed at high doses of 470 Gy yielded accurate equivalent dose (De) results with low overdispersion, providing reasonable confidence in the chosen measurement conditions. 3 of the samples display single-grain De distributions with low levels of dispersion indicating that the sediments were adequately bleached prior to burial and remained undisturbed thereafter. The fourth sample displays higher De dispersion and a younger subpopulation of grains, which could be explained by beta-dose heterogeneity associated with interspersed gravels within the basal archaeological horizon. We apply various statistical age models to derive final chronologies and compare the resultant single-grain ages with those obtained using different absolute dating methods. We also report on experiments performed using 'synthetic multi-grain aliquots' created from the single-grain De datasets, and discuss their implications for the reliability of multi-grain OSL dating techniques in this context.

Single-grain OSL dating of Early Middle Palaeolithic deposits at Cuesta de la Bajada, Ebro Basin, Spain

NASA Astrophysics Data System (ADS)

Arnold, Lee; Demuro, Martina; Santonja, Manuel; Perez-Gonzalez, Alfredo; Pares, Josep

2013-04-01

The open-air site of Cuesta de la Bajada comprises a 2-2.5 m-thick sequence of fluvial-lacustrine sediments inset into the +50-60 m terrace deposits preserved along the south-eastern margins of the Alfambra river valley, Teruel, Spain. The main archaeological horizons lie ~20 m above the present-day river level and consists of an upward-fining sequence of massive fluvial silts and fine sands with dispersed gravels, detritic marls and shales that collectively overlie a series of planar bedded fluvial gravels. These units have yielded ~3000 lithic artefacts displaying reduction techniques characteristic of an early Middle Palaeolithic techno-complex, as well as a multitude of faunal remains indicative of a late Middle Pleistocene origin. The paucity of open-air Palaeolithic sites in the interior eastern sector of the Iberian Peninsula, and the relatively low number of documented early Middle Palaeolithic archives in this region, means that Cuesta de la Bajada is of key importance for understanding the coexistence/transition of Iberian Acheulean and Mousterian techno-complexes during the Middle Pleistocene period. Establishing reliable absolute chronologies at Cuesta de la Bajada remains essential for understanding the regional significance of this site. In an attempt to redress the existing chronological uncertainty we are undertaking an interdisciplinary dating study of the Middle Palaeolithic deposits using OSL dating, ESR/U-series dating of teeth and ESR dating of sedimentary quartz. Here we present results obtained using quartz single-grain OSL dating of 4 samples collected from a 7 m vertical profile bracketing the archaeological horizons. 2 samples were collected from the archaeology-bearing silt and fine sand horizons, while the remaining samples were obtained from well-bedded fine-sands and silts 3.5 m above and 3 m below the main excavation. The measured quartz grains are characterised by relatively bright OSL signals and typically display dose-response curves with very high saturation limits. The latter offers the advantage of extending the age range over which single-grain techniques can be applied in this Middle Pleistocene context. Dose-recovery tests performed at high doses of 470 Gy yielded accurate equivalent dose (De) results with low overdispersion, providing reasonable confidence in the chosen measurement conditions. Three of the samples display single-grain De distributions with low levels of dispersion indicating that the sediments were adequately bleached prior to burial and remained undisturbed thereafter. The fourth sample displays higher De dispersion and a younger subpopulation of grains, which could be explained by beta-dose heterogeneity associated with interspersed gravels within the basal archaeological horizon. We apply various statistical age models to derive final chronologies and compare the resultant single-grain ages with those obtained using different absolute dating methods. We also report on experiments performed using 'synthetic multi-grain aliquots' created from the single-grain De datasets, and discuss their implications for the reliability of multi-grain OSL dating techniques in this context.

Fault-sourced alluvial fans and their interaction with axial fluvial drainage: An example from the Plio-Pleistocene Upper Valdarno Basin (Tuscany, Italy)

NASA Astrophysics Data System (ADS)

Fidolini, Francesco; Ghinassi, Massimiliano; Aldinucci, Mauro; Billi, Paolo; Boaga, Jacopo; Deiana, Rita; Brivio, Lara

2013-05-01

The present study deals with the fault-sourced, alluvial-fan deposits of the Plio-Pleistocene Upper Valdarno Basin (Northern Apennines, Italy). Different phases of alluvial fan aggradation, progradation and backstep are discussed as possible effects of the interaction among fault-generated accommodation space, sediment supply and discharge variations affecting the axial fluvial drainage. The Upper Valdarno Basin, located about 35 km SE of Florence, is filled with 550 m palustrine, lacustrine and alluvial deposits forming four main unconformity-bounded units (i.e. synthems). The study alluvial-fan deposits belong to the two uppermost synthems (Montevarchi and Torrente Ciuffenna synthems) and are Early to Middle Pleistocene in age. These deposits are sourced from the fault-bounded, NE margin of the basin and interfinger with axial fluvial deposits. Alluvial fan deposits of the Montevarchi Synthem consist of three main intervals: i) a lower interval, which lacks any evidence of a depositional trend and testify balance between the subsidence rate (i.e. fault activity) and the amount of sediment provided from the margin; ii) a coarsening-upward middle interval, pointing to a decrease in subsidence rate associated with an augment in sediment supply; iii) a fining-upward, upper interval (locally preserved), documenting a phase of tectonic quiescence associated with a progressive re-equilibration of the tectonically-induced morphological profile. The basin-scale unconformity, which separates the Montevarchi and Torrente Ciuffenna synthems was due to the entrance of the Arno River into the basin as consequence of a piracy. This event caused a dramatic increase in water discharge of the axial fluvial system, and its consequent embanking. Such an erosional surface started to develop in the axial areas, and propagated along the main tributaries, triggering erosion of the alluvial fan deposits. Alluvial-fan deposits of the Torrente Ciuffenna Synthem accumulated above the unconformity during a phase of tectonic quiescence, and show a fining-upward depositional trend. This trend was generated by a progressive decrease in sediment supply stemming out from upstream migration of the knickpoints developed during the embanking of the axial system.

Eustatic and far-field tectonic control on the development of an intra-platform carbonate-shoal complex: upper tongue of the Tanglewood Member, Upper Ordovician Lexington Limestone, central Kentucky, U.S.A.

NASA Astrophysics Data System (ADS)

Koirala, Dibya Raj; Ettensohn, Frank R.; Clepper, Marta L.

2016-11-01

The Lexington or Trenton Limestone is an Upper Ordovician (Chatfieldian-Edenian; upper Sandbian-lower Katian), temperate-water unit, averaging about 60-m thick, that was deposited in relatively shallow waters across the Lexington Platform in east-central United States during the Taconian Orogeny. Lexington/Trenton shallow-water deposition ended across most of the platform in late Chatfieldian time and from that point deepened upward into the more shale-rich Clays Ferry, Point Pleasant and Kope formations due to apparent sea-level rise. In central Kentucky, however, deposition of the Lexington Limestone continued into early Edenian time and includes up to 50 m of additional coarse calcarenites and calcirudites at the top, which form the Tanglewood buildup and reflect locally regressive conditions, apparently related to local structural uplift. Consequently, in central Kentucky, the Lexington is more than 100-m thick, and Lexington deposition on the buildup continued into early Edenian time as an intra-platform shoal complex that tongues out into deeper-water units in all directions. In an attempt to understand how this shoal complex developed, we examined the last major body of coarse skeletal sands in the central Kentucky Lexington Limestone, the upper tongue of the Tanglewood Member, a 12-m-thick succession of fossiliferous calcarenite and calcirudite that occurs across an area of 5200 km2 near the center of the Lexington Platform. Although relatively homogeneous, the upper Tanglewood is divisible into five, small-scale, fining-upward, sequence-like cycles, which contain prominent, widespread deformed horizons. Facies analysis indicates that four lithofacies, which reflect distinct depositional environments, comprise the sequences across the shoal complex. Lithofacies were correlated across the shoal complex by integrating cyclicity and widespread deformed horizons in order to delineate the locations of major depositional environments. Facies analysis shows that the thickest and coarsest parts of each sequence, and the shallowest depositional environments, coincide with basement fault blocks, which are known to have experienced uplift during earlier Lexington Limestone deposition. The occurrence of thick, coarse facies on the same blocks suggests that the blocks continued to experience uplift into shallow water, where tides and waves redistributed sediments during upper Tanglewood deposition. Although eustasy apparently controlled cyclicity, Taconian far-field forces generated by orogeny in the east seem to have influenced facies distribution in each cycle through reactivation of basement fault zones as synsedimentary growth faults. The example of the upper Tanglewood Member shows that tectonic far-field forces can exert important influences on the development of carbonate depositional environments, even in distal intracratonic settings like the Lexington Platform.

SNP discovery by high-throughput sequencing in soybean

PubMed Central

2010-01-01

Background With the advance of new massively parallel genotyping technologies, quantitative trait loci (QTL) fine mapping and map-based cloning become more achievable in identifying genes for important and complex traits. Development of high-density genetic markers in the QTL regions of specific mapping populations is essential for fine-mapping and map-based cloning of economically important genes. Single nucleotide polymorphisms (SNPs) are the most abundant form of genetic variation existing between any diverse genotypes that are usually used for QTL mapping studies. The massively parallel sequencing technologies (Roche GS/454, Illumina GA/Solexa, and ABI/SOLiD), have been widely applied to identify genome-wide sequence variations. However, it is still remains unclear whether sequence data at a low sequencing depth are enough to detect the variations existing in any QTL regions of interest in a crop genome, and how to prepare sequencing samples for a complex genome such as soybean. Therefore, with the aims of identifying SNP markers in a cost effective way for fine-mapping several QTL regions, and testing the validation rate of the putative SNPs predicted with Solexa short sequence reads at a low sequencing depth, we evaluated a pooled DNA fragment reduced representation library and SNP detection methods applied to short read sequences generated by Solexa high-throughput sequencing technology. Results A total of 39,022 putative SNPs were identified by the Illumina/Solexa sequencing system using a reduced representation DNA library of two parental lines of a mapping population. The validation rates of these putative SNPs predicted with low and high stringency were 72% and 85%, respectively. One hundred sixty four SNP markers resulted from the validation of putative SNPs and have been selectively chosen to target a known QTL, thereby increasing the marker density of the targeted region to one marker per 42 K bp. Conclusions We have demonstrated how to quickly identify large numbers of SNPs for fine mapping of QTL regions by applying massively parallel sequencing combined with genome complexity reduction techniques. This SNP discovery approach is more efficient for targeting multiple QTL regions in a same genetic population, which can be applied to other crops. PMID:20701770

The impact of cerebellar transcranial direct current stimulation (tDCS) on learning fine-motor sequences

PubMed Central

Wu, Allan D.; Samra, Jasmine K.

2017-01-01

The cerebellum has been shown to be important for skill learning, including the learning of motor sequences. We investigated whether cerebellar transcranial direct current stimulation (tDCS) would enhance learning of fine motor sequences. Because the ability to generalize or transfer to novel task variations or circumstances is a crucial goal of real world training, we also examined the effect of tDCS on performance of novel sequences after training. In Study 1, participants received either anodal, cathodal or sham stimulation while simultaneously practising three eight-element key press sequences in a non-repeating, interleaved order. Immediately after sequence practice with concurrent tDCS, a transfer session was given in which participants practised three interleaved novel sequences. No stimulation was given during transfer. An inhibitory effect of cathodal tDCS was found during practice, such that the rate of learning was slowed in comparison to the anodal and sham groups. In Study 2, participants received anodal or sham stimulation and a 24 h delay was added between the practice and transfer sessions to reduce mental fatigue. Although this consolidation period benefitted subsequent transfer for both tDCS groups, anodal tDCS enhanced transfer performance. Together, these studies demonstrate polarity-specific effects on fine motor sequence learning and generalization. This article is part of the themed issue ‘New frontiers for statistical learning in the cognitive sciences’. PMID:27872369

The impact of cerebellar transcranial direct current stimulation (tDCS) on learning fine-motor sequences.

PubMed

Shimizu, Renee E; Wu, Allan D; Samra, Jasmine K; Knowlton, Barbara J

2017-01-05

The cerebellum has been shown to be important for skill learning, including the learning of motor sequences. We investigated whether cerebellar transcranial direct current stimulation (tDCS) would enhance learning of fine motor sequences. Because the ability to generalize or transfer to novel task variations or circumstances is a crucial goal of real world training, we also examined the effect of tDCS on performance of novel sequences after training. In Study 1, participants received either anodal, cathodal or sham stimulation while simultaneously practising three eight-element key press sequences in a non-repeating, interleaved order. Immediately after sequence practice with concurrent tDCS, a transfer session was given in which participants practised three interleaved novel sequences. No stimulation was given during transfer. An inhibitory effect of cathodal tDCS was found during practice, such that the rate of learning was slowed in comparison to the anodal and sham groups. In Study 2, participants received anodal or sham stimulation and a 24 h delay was added between the practice and transfer sessions to reduce mental fatigue. Although this consolidation period benefitted subsequent transfer for both tDCS groups, anodal tDCS enhanced transfer performance. Together, these studies demonstrate polarity-specific effects on fine motor sequence learning and generalization.This article is part of the themed issue 'New frontiers for statistical learning in the cognitive sciences'. © 2016 The Author(s).

Integrating sequence stratigraphy and rock-physics to interpret seismic amplitudes and predict reservoir quality

NASA Astrophysics Data System (ADS)

Dutta, Tanima

This dissertation focuses on the link between seismic amplitudes and reservoir properties. Prediction of reservoir properties, such as sorting, sand/shale ratio, and cement-volume from seismic amplitudes improves by integrating knowledge from multiple disciplines. The key contribution of this dissertation is to improve the prediction of reservoir properties by integrating sequence stratigraphy and rock physics. Sequence stratigraphy has been successfully used for qualitative interpretation of seismic amplitudes to predict reservoir properties. Rock physics modeling allows quantitative interpretation of seismic amplitudes. However, often there is uncertainty about selecting geologically appropriate rock physics model and its input parameters, away from the wells. In the present dissertation, we exploit the predictive power of sequence stratigraphy to extract the spatial trends of sedimentological parameters that control seismic amplitudes. These spatial trends of sedimentological parameters can serve as valuable constraints in rock physics modeling, especially away from the wells. Consequently, rock physics modeling, integrated with the trends from sequence stratigraphy, become useful for interpreting observed seismic amplitudes away from the wells in terms of underlying sedimentological parameters. We illustrate this methodology using a comprehensive dataset from channelized turbidite systems, deposited in minibasin settings in the offshore Equatorial Guinea, West Africa. First, we present a practical recipe for using closed-form expressions of effective medium models to predict seismic velocities in unconsolidated sandstones. We use an effective medium model that combines perfectly rough and smooth grains (the extended Walton model), and use that model to derive coordination number, porosity, and pressure relations for P and S wave velocities from experimental data. Our recipe provides reasonable fits to other experimental and borehole data, and specifically improves the predictions of shear wave velocities. In addition, we provide empirical relations on normal compaction depth trends of porosity, velocities, and VP/VS ratio for shale and clean sands in shallow, supra-salt sediments in the Gulf of Mexico. Next, we identify probable spatial trends of sand/shale ratio and sorting as predicted by the conventional sequence stratigraphic model in minibasin settings (spill-and-fill model). These spatial trends are evaluated using well data from offshore West Africa, and the same well data are used to calibrate rock physics models (modified soft-sand model) that provide links between P-impedance and quartz/clay ratio, and sorting. The spatial increase in sand/shale ratio and sorting corresponds to an overall increase in P-impedance, and AVO intercept and gradient. The results are used as a guide to interpret sedimentological parameters from seismic attributes, away from the well locations. We present a quantitative link between carbonate cement and seismic attributes by combining stratigraphie cycles and the rock physics model (modified differential effective medium model). The variation in carbonate cement volume in West Africa can be linked with two distinct stratigraphic cycles: the coarsening-upward cycles and the fining-upward cycles. Cemented sandstones associated with these cycles exhibit distinct signatures on P-impedance vs. porosity and AVO intercept vs. gradient crossplots. These observations are important for assessing reservoir properties in the West Africa as well as in other analogous depositional environments. Finally, we investigate the relationship between seismic velocities and time temperature index (TTI) using basin and petroleum system modeling at Rio Muni basin, West Africa. We find that both VP and VS increase exponentially with TTI. The results can be applied to predict TTI, and thereby thermal maturity, from observed velocities.

AN INTRIGUING CHROMOSPHERIC JET OBSERVED BY HINODE: FINE STRUCTURE KINEMATICS AND EVIDENCE OF UNWINDING TWISTS

DOE Office of Scientific and Technical Information (OSTI.GOV)

Liu Wei; Berger, Thomas E.; Title, Alan M.

2009-12-10

We report a chromospheric jet lasting for more than 1 hr observed by the Hinode Solar Optical Telescope in unprecedented detail. The ejection occurred in three episodes separated by 12-14 minutes, with the amount and velocity of material decreasing with time. The upward velocities range from 438 to 33 km s{sup -1}, while the downward velocities of the material falling back have smaller values (mean: -56km s{sup -1}) and a narrower distribution (standard deviation: 14km s{sup -1}). The average acceleration inferred from parabolic spacetime tracks is 141 m s{sup -2}, a fraction of the solar gravitational acceleration. The jet consistsmore » of fine threads (0.''5-2'' wide), which exhibit coherent, oscillatory transverse motions perpendicular to the jet axis and about a common equilibrium position. These motions propagate upward along the jet, with the maximum phase speed of 744+-11 km s{sup -1}at the leading front of the jet. The transverse oscillation velocities range from 151 to 26 km s{sup -1}, amplitudes from 6.0 to 1.9 Mm, and periods from 250 to 536 s. The oscillations slow down with time and cease when the material starts to fall back. The falling material travels along almost straight lines in the original direction of ascent, showing no transverse motions. These observations are consistent with the scenario that the jet involves untwisting helical threads, which rotate about the axis of a single large cylinder and shed magnetic helicity into the upper atmosphere.« less

TRIGGER MECHANISM OF SOLAR SUBFLARES IN A BRAIDED CORONAL MAGNETIC STRUCTURE

DOE Office of Scientific and Technical Information (OSTI.GOV)

Tiwari, Sanjiv K.; Alexander, Caroline E.; Winebarger, Amy R.

Fine-scale braiding of coronal magnetic loops by continuous footpoint motions may power coronal heating via nanoflares, which are spontaneous fine-scale bursts of internal reconnection. An initial nanoflare may trigger an avalanche of reconnection of the braids, making a microflare or larger subflare. In contrast to this internal triggering of subflares, we observe external triggering of subflares in a braided coronal magnetic field observed by the High-resolution Coronal Imager (Hi-C). We track the development of these subflares using 12 s cadence images acquired by SDO/AIA in 1600, 193, 94 Å, and registered magnetograms of SDO/HMI, over four hours centered on the Hi-Cmore » observing time. These data show numerous recurring small-scale brightenings in transition-region emission happening on polarity inversion lines where flux cancellation is occurring. We present in detail an example of an apparent burst of reconnection of two loops in the transition region under the braided coronal field which is appropriate for releasing a short reconnected loop downward and a longer reconnected loop upward. The short loop presumably submerges into the photosphere, participating in observed flux cancellation. A subflare in the overlying braided magnetic field is apparently triggered by the disturbance of the braided field by the reconnection-released upward loop. At least 10 subflares observed in this braided structure appear to be triggered this way. How common this external trigger mechanism for coronal subflares is in other active regions, and how important it is for coronal heating in general, remain to be seen.« less

Depositional and Structural Controls on the Evolution of the Gas Hydrate Petroleum System in Green Canyon 955, Gulf of Mexico

NASA Astrophysics Data System (ADS)

Haines, S. S.; Hart, P. E.; Collett, T. S.; Weimer, P.; Shedd, W. W.; Frye, M.; Boswell, R.

2016-12-01

The depositional, erosional, and deformational history at Green Canyon 955 (GC955), Gulf of Mexico, provides insight into the reservoir characteristics and the gas and gas hydrate petroleum system at this established research site. Using high-resolution 2D seismic data, industry 3D seismic data, and borehole logs, we have refined our knowledge of the area's geologic history. Following extended fine-grained deposition (while the primary sediment input was hundreds of km to the east), channel/levee activity shifted to the area of GC955 approximately 500 kya. The initial resulting deposits include sand-rich proximal levee packages, readily identifiable in high-resolution seismic images, and limited channel deposits. The levee deposits occur in discrete "pods", the result of intermingled deposition and erosion. Subsequently, salt diapirism initiated a period of uplift and caused channel activity to shift a few kilometers eastward. Pelagic deposition was followed by a mix of fine-grained sediments and limited sandy strata deposited in a distal levee and/or fan environment. Channel features from this time period are evident east of GC955, but the available data suggest that these were mainly erosional, with minimal sand deposition. Salt-driven structural deformation created a multi-kilometer-scale east-west graben and normal faults. These extensional faults facilitated upward migration of gas from deeper in the system, ultimately leading to creation of several gas chimneys. The presence of free gas at the location of well GC955-Q indicates that the fine-grained unit overlying the main reservoir provides a good seal, consistent with pelagic deposition. The absence of free gas at well GC955-H, coupled with the presence of ongoing chimney-related gas flow nearby, indicates that this seal can be broken where the pelagic unit is cut by the large-throw graben faults. Reservoir connectivity within the levee deposit "pods" is likely, based on established characteristics of levee reservoirs. Connectivity between pods is uncertain, but gas/hydrate distribution suggests at least some compartmentalization. The character of borehole logs and of seismic reflections from the top of the main reservoir may indicate a fining-upward sediment distribution that likely controls the presence of gas hydrate.

Sedimentary controls on modern sand grain coat formation

NASA Astrophysics Data System (ADS)

Dowey, Patrick J.; Worden, Richard H.; Utley, James; Hodgson, David M.

2017-05-01

Coated sand grains can influence reservoir quality evolution during sandstone diagenesis. Porosity can be reduced and fluid flow restricted where grain coats encroach into pore space. Conversely pore-lining grain coats can restrict the growth of pore-filling quartz cement in deeply buried sandstones, and thus can result in unusually high porosity in deeply buried sandstones. Being able to predict the distribution of coated sand grains within petroleum reservoirs is thus important to help find good reservoir quality. Here we report a modern analogue study of 12 sediment cores from the Anllóns Estuary, Galicia, NW Spain, collected from a range of sub-environments, to help develop an understanding of the occurrence and distribution of coated grains. The cores were described for grain size, bioturbation and sedimentary structures, and then sub-sampled for electron and light microscopy, laser granulometry, and X-ray diffraction analysis. The Anllóns Estuary is sand-dominated with intertidal sand flats and saltmarsh environments at the margins; there is a shallowing/fining-upwards trend in the estuary-fill succession. Grain coats are present in nearly every sample analysed; they are between 1 μm and 100 μm thick and typically lack internal organisation. The extent of grain coat coverage can exceed 25% in some samples with coverage highest in the top 20 cm of cores. Samples from muddy intertidal flat and the muddy saltmarsh environments, close to the margins of the estuary, have the highest coat coverage (mean coat coverage of 20.2% and 21.3%, respectively). The lowest mean coat coverage occurs in the sandy saltmarsh (10.4%), beyond the upper tidal limit and sandy intertidal flat environments (8.4%), close to the main estuary channel. Mean coat coverage correlates with the concentration of clay fraction. The primary controls on the distribution of fine-grained sediment, and therefore grain coat distribution, are primary sediment transport and deposition processes that concentrate the clay fraction in the sediment towards the margins of the estuary. Bioturbation and clay illuviation/mechanical infiltration are secondary processes that may redistribute fine-grained sediment and produce grain coats. Here we have shown that detrital grain coats are more likely in marginal environments of ancient estuary-fills, which are typically found in the fining-upward part of progradational successions.

Application of population sequencing (POPSEQ) for ordering and inputting genotyping-by-sequencing markers in hexaploid wheat

USDA-ARS?s Scientific Manuscript database

The advancement of next-generation sequencing technologies in conjunction with new bioinformatics tools enabled fine-tuning of sequence-based high resolution mapping strategies for complex genomes. Although genotyping-by-sequencing (GBS) provides a large number of markers, its application for assoc...

Effective connectivity in the neural network underlying coarse-to-fine categorization of visual scenes. A dynamic causal modeling study.

PubMed

Kauffmann, Louise; Chauvin, Alan; Pichat, Cédric; Peyrin, Carole

2015-10-01

According to current models of visual perception scenes are processed in terms of spatial frequencies following a predominantly coarse-to-fine processing sequence. Low spatial frequencies (LSF) reach high-order areas rapidly in order to activate plausible interpretations of the visual input. This triggers top-down facilitation that guides subsequent processing of high spatial frequencies (HSF) in lower-level areas such as the inferotemporal and occipital cortices. However, dynamic interactions underlying top-down influences on the occipital cortex have never been systematically investigated. The present fMRI study aimed to further explore the neural bases and effective connectivity underlying coarse-to-fine processing of scenes, particularly the role of the occipital cortex. We used sequences of six filtered scenes as stimuli depicting coarse-to-fine or fine-to-coarse processing of scenes. Participants performed a categorization task on these stimuli (indoor vs. outdoor). Firstly, we showed that coarse-to-fine (compared to fine-to-coarse) sequences elicited stronger activation in the inferior frontal gyrus (in the orbitofrontal cortex), the inferotemporal cortex (in the fusiform and parahippocampal gyri), and the occipital cortex (in the cuneus). Dynamic causal modeling (DCM) was then used to infer effective connectivity between these regions. DCM results revealed that coarse-to-fine processing resulted in increased connectivity from the occipital cortex to the inferior frontal gyrus and from the inferior frontal gyrus to the inferotemporal cortex. Critically, we also observed an increase in connectivity strength from the inferior frontal gyrus to the occipital cortex, suggesting that top-down influences from frontal areas may guide processing of incoming signals. The present results support current models of visual perception and refine them by emphasizing the role of the occipital cortex as a cortical site for feedback projections in the neural network underlying coarse-to-fine processing of scenes. Copyright © 2015 Elsevier Inc. All rights reserved.

Stratigraphic palaeobiology around the Pliocene-Pleistocene boundary at Altavilla Milicia (Sicily, Italy)

NASA Astrophysics Data System (ADS)

Dominici, Stefano; Benvenuti, Marco; Garilli, Vittorio; Uchman, Alfred; Pollina, Francesco

2017-04-01

The Pliocene-Pleistocene around Altavilla Milicia, near Palermo (Sicily), includes a thick siliciclastic succession rich with shell beds, dominated by molluscs, brachiopods and annelids in fine-grained, totally bioturbated sandstones. Taphonomy of fossil assemblages indicates the importance of taphonomic feedback and within-habitat time-averaging in proximity of maximum flooding intervals. The trace fossil suite is characterized by the abundance of Thalassinoides paradoxicus boxworks and by local occurence of Scalichnus, Piscichnus, ?Scolicia, ?Bichordites, Ophiomorpha, ?Gyrolithes, Palaeophycus, Diopatrichnus and ?Taenidium. These trace fossils are typical of the archetypal Cruziana ichnofacies, with local elements of the proximal Cruziana ichnofacies, which point to deposition mainly below the fairweather wave base. Three depositional sequences, characterized by geometries driven by the interplay of eustatism and regional tectonics, were recognized through sedimentary facies analysis. Biostratigraphic data frame the oldest sequence in the upper Pliocene, whereas the thickest part of the succession, occupied by the second sedimentary sequence, includes biozone NN16b/17 of calcareous nannoplankton stratigraphy, thereby comprising the base of the Pleistocene. Transgressive deposits of the third and uppermost sequence are marked by encrusted and bioeroded pebbles with sparse oyster shells. The whole time interval is characterized by glacio-eustatic fluctuations in the 50-100 m range and with 100 ky-periodicity. We performed a multivariate analysis of 22 samples yielding 92 species of mollusks collected in the first and second sequences. Clustering and ordination analysis allowed to recognize a gradient controlled by depth-related environmental variables. At one end of the continuum we have a very-shallow water assemblage dominated by the bivalve Loripes orbiculatus, indicating an organic-rich seagrass bottom. Opposite in the continuum is an offshore assemblage dominated by Corbula gibba and the extinct gastropod Petaloconchus intortus. Both the shallowest and the deepest assemblages are from the first (Piacenzian) sequence. The gradient at intermediate depths is better characterized by restricting the analysis to 17 collections from the second sequence (Piacenzian-Gelasian). The shallowest assemblage is here dominated by upper shoreface species, such as Tellina spp. and Spisula subtruncata, and the deepest by muddy bottom, offshore transition species, such as Venus nux, the extinct gastropod Nassarius semistriatus and deposit-feeding nuculanoid bivalves. Plotting samples along the composite section allows to recognize two deepening-upward trends and two intervals of maximum flooding, in accordance with the sequence-stratigraphic interpretation. Stratigraphic palaeobiology proves to be a powerful tool to understand factors that control the geologic record during an interval of intense climate change.

An automatic and efficient pipeline for disease gene identification through utilizing family-based sequencing data.

PubMed

Song, Dandan; Li, Ning; Liao, Lejian

2015-01-01

Due to the generation of enormous amounts of data at both lower costs as well as in shorter times, whole-exome sequencing technologies provide dramatic opportunities for identifying disease genes implicated in Mendelian disorders. Since upwards of thousands genomic variants can be sequenced in each exome, it is challenging to filter pathogenic variants in protein coding regions and reduce the number of missing true variants. Therefore, an automatic and efficient pipeline for finding disease variants in Mendelian disorders is designed by exploiting a combination of variants filtering steps to analyze the family-based exome sequencing approach. Recent studies on the Freeman-Sheldon disease are revisited and show that the proposed method outperforms other existing candidate gene identification methods.

Modeling solute transport in a heterogeneous unsaturated porous medium under dynamic boundary conditions on different spatial scales

NASA Astrophysics Data System (ADS)

Cremer, Clemens; Neuweiler, Insa; Bechtold, Michel

2013-04-01

Understanding transport of solutes/contaminants through unsaturated soil in the shallow subsurface is vital to assess groundwater quality, nutrient cycling or to plan remediation projects. Alternating precipitation and evaporation conditions causing upward and downward flux with differing flow paths, changes in saturation and related structural heterogeneity make the description of transport in the unsaturated zone near the soil-surface a complex problem. Preferential flow paths strongly depend, among other things, on the saturation of a medium. Recent studies (e.g. Bechtold et al., 2011) showed lateral flow and solute transport during evaporation conditions (upward flux) in vertically layered sand columns. Results revealed that during evaporation water and solute are redistributed laterally from coarse to fine media deeper in the soil, and towards zones of lowest hydraulic head near to the soil surface. These zones at the surface can be coarse or fine grained depending on saturation status and evaporation flux. However, if boundary conditions are reversed and precipitation is applied, the flow field is not reversed in the same manner, resulting in entirely different transport patterns for downward and upward flow. Therefore, considering net-flow rates alone is misleading when describing transport in the shallow unsaturated zone. In this contribution, we analyze transport of a solute in the shallow subsurface to assess effects resulting from the superposition of heterogeneous soil structures and dynamic flow conditions on various spatial scales. Two-dimensional numerical simulations of unsaturated flow and transport in heterogeneous porous media under changing boundary conditions are carried out using a finite-volume code coupled to a particle tracking algorithm to quantify solute transport and leaching rates. In order to validate numerical simulations, results are qualitatively compared to those of a physical experiment (Bechtold et al., 2011). Numerical simulations differ in lateral scale reaching from 0.2 m to 1.5 m, while the height of the domain is kept constant to 1.5m. Strong material heterogeneity is realized through vertical layers of coarse and fine sand. Both materials remain permanently under liquid-flow-dominated ('stage1') evaporation conditions. Spatial moments as well as the dilution index (Kitanidis, 1994) are used for quantification of transport behaviour. Results show that, while all simulations led to anomalous transport, infiltration-evaporation cycles lead to faster solute leaching rates than solely infiltration at the same net-infiltration rate in both homogeneous and heterogeneous media. Flow and transport-paths significantly differed between infiltration and evaporation, resulting in lateral water fluxes and hence lateral solute transport. Variation of the width of the model domain shows faster leaching rates for domains with small horizontal extent.

Depositional environment of the downdip Queen City (Eocene) Sandstone, Mestena Grande Field Area, Jim Hogg and Duval Counties, Texas

DOE Office of Scientific and Technical Information (OSTI.GOV)

McCormack, J.

1994-09-01

The downdip Queen City sandstone interval in the Mestena Grande field area of the south Texas Gulf Coast basin comprises two sandstone depositional units, referred to in this paper as A Lobe and B Lobe. A total of 583 ft (179 m) of conventional core from 11 wells containing predominantly B Lobe deposits were examined macroscopically. The A Lobe is a thin (6-34 ft; 1.8-10.4 m) fine- to very fine-grained, mostly bioturbated, well-sorted sandstone. The B Lobe is composed of fine to very fine, well-sorted sandstone interbedded with siltstone and mudstone. The trace fossil assemblage of the B Lobe indicatesmore » that sediments were deposited in the cruziana ichnofacies. Trace fossils and authigenic minerals also suggest oxygen stratification during deposition. B Lobe contains five subunits, each up to 13.5 ft (4 m) net sand thickness. These units were deposited as part of a highstands systems tract during the early Lutetian Stage (lower middle Eocene). B Lobe is a primarily aggradational unit composed of storm-generated sandstone and heterolithic deposits of the lower shoreface to inner shelf environment. A Lobe is a coarsening upward unit and represents progradation of the shoreface during late highstand systems tract development. An interlobal mudstone, which separates the units, marks the transition from early to late highstand systems tract development.« less

Stratigraphy and depositional environments of the Lower Mississippian Joana Limestone in southern White Pine and northern Lincoln Counties, Nevada

DOE Office of Scientific and Technical Information (OSTI.GOV)

Gilmore, T.J.

1990-04-01

The Lower Mississippian Joana Limestone in the southern Schell Creek and Egan ranges of east-central Nevada is composed of three depositional facies: the unbedded wackestone with grainstone/packstone facies or Facies 1; the bedded wackestone with mudstone facies or Facies 2; and the restricted wackestone, mudstone/shale facies, or Facies 3. Facies 1 is characterized by Waulsortian-type carbonate buildups with massive unbedded wackestone cores, grainstone flanking beds and grainstone/packstone capping units. Facies 2 is characterized by an upward progression of sedimentary bedding types from thinly laminated to large scale trough cross-bedding that indicates a shoaling upward of this facies. Facies 3 ismore » characterized by sparse wackestones, mudstones, and shale which show a decrease in both faunal types and diversity and an increase in fine clastics. The restricted wackestone, mudstone/shale facies grades upward into the Mississippian Chainman Shale. The age of the Joana Limestone is confirmed as late Kinderhookian to early Osagean based primarily on conodonts and foraminifera. In the middle beds of the Joana Limestone, the previously unreported upper Siphonodella crenulata conodont zone occurs which helps correlate the Joana Limestone with regional transgressive/regressive sea level events. Color alteration indices of these conodonts are 1.5 to 2, and occur in the oil generation window. Additionally, oil staining was observed in numerous samples located primarily in the lower half of the formation, represented by Facies 3, the unbedded wackestone with grainstone/packstone facies.« less

Impacts of Colonial Deforestation on Sediment Organic Carbon Fluxes and Budget Using Black Carbon Chronology: Waiapu Continental Shelf, New Zealand

NASA Astrophysics Data System (ADS)

Wadman, H. M.; Canuel, E. A.; Bauer, J. E.; McNinch, J. E.

2009-12-01

Small, mountainous rivers deliver a disproportionate amount of sediment and associated organic matter to coastal regions globally. The Waiapu River, North Island, New Zealand, is characterized by one of the highest sediment yields on earth, providing a model system for studying episodic delivery and preservation of sedimentary organic matter in an energetic, aggradational setting. Hyperpycnal plumes provide the primary mode of sediment delivery, depositing fine-grained sediment as flood layers on the inner shelf. Severe erosion following colonial-era (~1890-1920) slash and burn deforestation increased the sediment yield to the shelf 4- to 5-fold relative to previous levels. Colonial catchment-wide burning also produced black carbon (BC), which may be used to establish chronological control in the heterogeneous inner shelf sediments that are not easily dateable using traditional techniques. While recent work indicates that these inner shelf flood layers sequester ~16-34% of the total fine-grained sediment budget, comparable to the amount preserved on the mid-outer shelf, little is understood about the organic matter associated with these inner shelf sediments. High-resolution seismic reflection data were used to select four representative cores to characterize total sedimentary BC, total organic carbon (TOC) and total nitrogen (TN) sequestered in the inner shelf fine-grained sediments. Soot and graphitic BC (SGBC) was quantified using chemo-thermal oxidation (CTO-375), while coarse-grained BC (CGBC) was quantified using traditional point-counting methodologies. SGBC weight percentages ranged from ~0.01-0.07, and peaked at ~150cm depth in all four cores. This interval corresponds to peak abundance of CGBC as well. The ~150cm interval is interpreted to represent the height of colonial slash and burn deforestation, and is further supported by fining-upward sequences in all of the cores as well as by multiple 14C dates. Overall, SGBC represented an average of 29% (range 7-75%) of the TOC throughout the cores, with the highest levels found in the deforestation layer at ~150cm (average 44%, range 30-75%). A secondary increase in % SGBC was found in the upper 50cm of the cores and is interpreted as increasing global BC production by diesel combustion in the 1970s. TOC and TN weight percentages associated with the fine-sediment fraction did not differ markedly above and below the deforestation layer. TOC and TN associated with the bulk sediment, however, did show increases in weight percent above ~150cm. This suggests that either 1) increases in fine-grained sedimentary organic material associated with the recent increase in sediment yield have been effectively remineralized, or 2) sedimentary organic matter is bimodal in origin (recent plant material vs. ancient, bedrock-derived carbon), and size-related variations in catchment and burial dynamics are influencing the fate of the different size fractions of organic material.

Dynamics of surges generated by hydrothermal blasts during the 6 August 2012 Te Maari eruption, Mt. Tongariro, New Zealand

NASA Astrophysics Data System (ADS)

Lube, Gert; Breard, Eric C. P.; Cronin, Shane J.; Procter, Jonathan N.; Brenna, Marco; Moebis, Anja; Pardo, Natalia; Stewart, Robert B.; Jolly, Arthur; Fournier, Nicolas

2014-10-01

The 6 August 2012 Te Maari eruption produced violent and widespread "cold" Pyroclastic Density Currents (PDCs) following unroofing of the pressurized hydrothermal system. Despite an erupted volume of only ~ 5 × 105 m3, and lacking any juvenile component, the 340,000 m3 of PDCs spread over an area of 6.1 km2 and had mobilities that were on the order of volcanic blasts or blast-like PDCs. This great mobility was due to strong lateral focussing of explosion energy, producing jets with initial velocities > 100 m/s. We present a type-stratigraphy for these hydrothermal-derived low-temperature PDCs that show a tripartite deposit sequence. Each of the deposit units dominates respectively three outward-gradational sedimentary facies, reflecting transitions in the propagating PDC transport and depositional mechanisms. The largest PDCs, directed west and east of the Upper Te Maari area were generated from outer-cone breccias and tuffs that were mostly highly hydrothermally altered. Landsliding and the geometry of the hydrothermal area led to the directed jetting. Initial particle-laden jets laid sheets, grading into lobes of proximal massive sand to gravel-rich facies dominated by unit A and extending up to 1 km from the vents. As the jets were collapsing, a vertically and longitudinally stratified PDC developed within the first few hundred metres from source. Exponential thinning and coarse-tail grading-dominated fining with radial distance of massive unit A resulted from fast deposition and progressive depletion of the most concentrated flow region behind the PDC head. Markedly slower tractional sedimentation from the passing PDC body and tail deposited the highly stratified and ripple-bedded fine-coarse ash of unit B. This formed distinctive dune fields of the medial dune-bedded ash-rich facies. Upwards in depositional sequences the waning of the current can be seen, by replacement of higher-energy bedforms to progressively lower ones. Downstream progressive waning and further depletion are characterised by the development of the distal wavy to planar-bedded ash-rich facies. This is increasingly dominated by the uppermost deposition unit C of laminated fine-med ash deposited by gently turbulent, dilute phoenix clouds. These high energy PDCs, sourced from flank hydrothermal systems should be regarded as a serious threat in any multihazard assessment of a stratovolcano, even though they may not be one of the major magmatic vent sites. In addition, further detailed studies of these hydrothermal jetting events and their deposits should be pursued in order to better understand large-volume volcanic blasts, which appear to be a larger scale sibling phenomenon.

Characteristics of lightning leader propagation and ground attachment

NASA Astrophysics Data System (ADS)

Jiang, Rubin; Qie, Xiushu; Wang, Zhichao; Zhang, Hongbo; Lu, Gaopeng; Sun, Zhuling; Liu, Mingyuan; Li, Xun

2015-12-01

The grounding process and the associated leader behavior were analyzed by using high-speed video record and time-correlated electric field change for 37 natural negative cloud-to-ground flashes. Weak luminous grounded channel was recognized below the downward leader tip in the frame preceding the return stroke, which is inferred as upward connecting leader considering the physical process of lightning attachment, though not directly confirmed by sequential frames. For stepped leader-first return strokes, the upward connecting leaders tend to be induced by those downward leader branches with brighter luminosity and lower channel tip above ground, and they may accomplish the attachment with great possibility. The upward connecting leaders for 2 out of 61 leader-subsequent stroke sequences were captured in the frame prior to the return stroke, exhibiting relatively long channel lengths of 340 m and 105 m, respectively. The inducing downward subsequent leaders were of the chaotic type characterized by irregular electric field pulse train with duration of 0.2-0.3 ms. The transient drop of the high potential difference between stepped leader system and ground when the attachment occurred would macroscopically terminate the propagation of those ungrounded branches while would not effectively prevent the development of the existing space stem systems in the low-conductivity streamer zone apart from the leader tip. When the ungrounded branches are of poor connection with the main stroke channel, their further propagation toward ground would be feasible. These two factors may contribute to the occurrence of multiple grounding within the same leader-return stroke sequence.

Geology of natural gas reservoir: Upper Travis Peak Formation, western flank of Sabine Uplift, east Texas

DOE Office of Scientific and Technical Information (OSTI.GOV)

Fracasso, M.A.

The Travis Peak Formation (Lower Cretaceous) in the eastern East Texas basin represents a sand-rich, fluvial-deltaic depositional system. This lobate, high-constructive deltaic system prograded radially to the southeast from an Upshur County locus. Regional studies of the Travis Peak established a threefold internal stratigraphic framework: a middle sand-rich fluvial and delta-plain sequence is gradationally overlain and underlain by a marine-influenced delta-fringe zone with a higher mud content. The entire Travis Peak succession thins over the Bethany dome on the western flank of the Sabine uplift. However, the delta-fringe sequences are relatively thicker over the structure because of a disproportionately greatermore » thinning of the middle sandy fluvial-deltaic sequence. Lesser sand deposition over the Bethany dome reflects an active structural control over facies distribution. Gas production in the Bethany field and surrounding area is concentrated in thin zones (5-15 ft) of the upper delta-fringe sequence. This distribution probably reflects the increased abundance of mudstone beds in the upper delta-fringe interval, which may have served as source rocks or barriers to upward gas migration, or as both. The predominant trapping mechanism in this region is stratigraphic sand pinch-out in a structurally updip direction on the flanks of major structures. Studies of core and closely spaced electric logs west of the Bethany dome help define the depositional systems in the upper delta-fringe producing interval. This sequence comprises a complex mosaic of continental and marine facies, and exhibits an overall upward trend of increasing marine influence that spans a gradual transition into transgressive carbonates of the Sligo Formation.« less

A note on the efficiencies of sampling strategies in two-stage Bayesian regional fine mapping of a quantitative trait.

PubMed

Chen, Zhijian; Craiu, Radu V; Bull, Shelley B

2014-11-01

In focused studies designed to follow up associations detected in a genome-wide association study (GWAS), investigators can proceed to fine-map a genomic region by targeted sequencing or dense genotyping of all variants in the region, aiming to identify a functional sequence variant. For the analysis of a quantitative trait, we consider a Bayesian approach to fine-mapping study design that incorporates stratification according to a promising GWAS tag SNP in the same region. Improved cost-efficiency can be achieved when the fine-mapping phase incorporates a two-stage design, with identification of a smaller set of more promising variants in a subsample taken in stage 1, followed by their evaluation in an independent stage 2 subsample. To avoid the potential negative impact of genetic model misspecification on inference we incorporate genetic model selection based on posterior probabilities for each competing model. Our simulation study shows that, compared to simple random sampling that ignores genetic information from GWAS, tag-SNP-based stratified sample allocation methods reduce the number of variants continuing to stage 2 and are more likely to promote the functional sequence variant into confirmation studies. © 2014 WILEY PERIODICALS, INC.

Seismic analysis of clinoform depositional sequences and shelf-margin trajectories in Lower Cretaceous (Albian) strata, Alaska North Slope

USGS Publications Warehouse

Houseknecht, D.W.; Bird, K.J.; Schenk, C.J.

2009-01-01

Lower Cretaceous strata beneath the Alaska North Slope include clinoform depositional sequences that filled the western Colville foreland basin and overstepped the Beaufort rift shoulder. Analysis of Albian clinoform sequences with two-dimensional (2D) seismic data resulted in the recognition of seismic facies inferred to represent lowstand, transgressive and highstand systems tracts. These are stacked to produce shelf-margin trajectories that appear in low-resolution seismic data to alternate between aggradational and progradational. Higher-resolution seismic data reveal shelf-margin trajectories that are more complex, particularly in net-aggradational areas, where three patterns commonly are observed: (1) a negative (downward) step across the sequence boundary followed by mostly aggradation in the lowstand systems tract (LST), (2) a positive (upward) step across the sequence boundary followed by mostly progradation in the LST and (3) an upward backstep across a mass-failure d??collement. These different shelf-margin trajectories are interpreted as (1) fall of relative sea level below the shelf edge, (2) fall of relative sea level to above the shelf edge and (3) mass-failure removal of shelf-margin sediment. Lowstand shelf margins mapped using these criteria are oriented north-south in the foreland basin, indicating longitudinal filling from west to east. The shelf margins turn westward in the north, where the clinoform depositional system overstepped the rift shoulder, and turn eastward in the south, suggesting progradation of depositional systems from the ancestral Brooks Range into the foredeep. Lowstand shelf-margin orientations are consistently perpendicular to clinoform-foreset-dip directions. Although the Albian clinoform sequences of the Alaska North Slope are generally similar in stratal geometry to clinoform sequences elsewhere, they are significantly thicker. Clinoform-sequence thickness ranges from 600-1000 m in the north to 1700-2000 m in the south, reflecting increased accommodation from the rift shoulder into the foredeep. The unusually thick clinoform sequences suggest significant subsidence followed by rapid sediment influx. No claim to original US government works. Journal Compilation ?? Blackwell Publishing Ltd, European Association of Geoscientists & Engineers and International Association of Sedimentologists.

Tertiary fission-track ages from the Bagua syncline (northern Peru): Stratigraphic and tectonic implications

NASA Astrophysics Data System (ADS)

Naeser, C. W.; Crochet, J.-Y.; Jaillard, E.; Laubacher, G.; Mourier, T.; Sigé, B.

The results of five zircon fission-track ages of volcanic tuffs intercalated within the continental deposits of the Bagua syncline (northern Peru) are reported. These 2500-meter-thick deposits overlie mid-Campanian to lower Maastrichtian fine-grained red beds (Fundo El Triunfo Formation). The disconformable fluvial conglomerates of the Rentema Formation are associated with a 54 Ma tuff (upper Paleocene-lower Eocene?) and would reflect the Inca-1 tectonic phase. The Sambimera Formation (Eocene to mid-Miocene) is a coarsening-upward sequence (from lacustrine to fluvial) that contains three volcanic tuffs of 31, 29, and 12 Ma, respectively. A probable stratigraphic gap, upper Eocene-lower Oligocene, would be related to the late Eocene Inca-2 phase. Neither deformation nor sedimentary discontinuity has been recognized so far. However, the lacustrine to fluvial transition could relate to the late Oligocene Aymara tectonic phase. The unconformable fanglomerates and fluvial deposits of the San Antonio Formation contain in their upper part a 9 Ma tuff (mid-to upper Miocene), and thier base records a major tectonic event (Quechua-2 phase?). The unconformable fanglomerates of the Tambopara Formation date the folding of the Bagua syncline, which could be ascribed to the latest Miocene Quechua-3 tectonics. These formations are correlative with comparable deposits in the sub-Andean basins, suggesting that these eastern areas underwent strong tectonic subsidence of the foreland basin type since mid-Miocene times.

Tertiary fission-track ages from the Bagua syncline (northern Peru): Stratigraphic and tectonic implications

USGS Publications Warehouse

Naeser, C.W.; Crochet, J.-Y.; Jaillard, E.; Laubacher, G.; Mourier, T.; Sige, B.

1991-01-01

The results of five zircon fission-track ages of volcanic tuffs intercalated within the continental deposits of the Bagua syncline (northern Peru) are reported. These 2500-meter-thick deposits overlie mid-Campanian to lower Maastrichtian fine-grained red beds (Fundo El Triunfo Formation). The disconformable fluvial conglomerates of the Rentema Formation are associated with a 54 Ma tuff (upper Paleocene-lower Eocene?) and would reflect the Inca-1 tectonic phase. The Sambimera Formation (Eocene to mid-Miocene) is a coarsening-upward sequence (from lacustrine to fluvial) that contains three volcanic tuffs of 31, 29, and 12 Ma, respectively. A probable stratigraphic gap, upper Eocene-lower Oligocene, would be related to the late Eocene Inca-2 phase. Neither deformation nor sedimentary discontinuity has been recognized so far. However, the lacustrine to fluvial transition could relate to the late Oligocene Aymara tectonic phase. The unconformable fanglomerates and fluvial deposits of the San Antonio Formation contain in their upper part a 9 Ma tuff (mid-to upper Miocene), and thier base records a major tectonic event (Quechua-2 phase?). The unconformable fanglomerates of the Tambopara Formation date the folding of the Bagua syncline, which could be ascribed to the latest Miocene Quechua-3 tectonics. These formations are correlative with comparable deposits in the sub-Andean basins, suggesting that these eastern areas underwent strong tectonic subsidence of the foreland basin type since mid-Miocene times. ?? 1991.

Shale oil recovery process

DOEpatents

Zerga, Daniel P.

1980-01-01

A process of producing within a subterranean oil shale deposit a retort chamber containing permeable fragmented material wherein a series of explosive charges are emplaced in the deposit in a particular configuration comprising an initiating round which functions to produce an upward flexure of the overburden and to initiate fragmentation of the oil shale within the area of the retort chamber to be formed, the initiating round being followed in a predetermined time sequence by retreating lines of emplaced charges developing further fragmentation within the retort zone and continued lateral upward flexure of the overburden. The initiating round is characterized by a plurality of 5-spot patterns and the retreating lines of charges are positioned and fired along zigzag lines generally forming retreating rows of W's. Particular time delays in the firing of successive charges are disclosed.

Spatial Patterns of Snow Cover in North Carolina: Surface and Satellite Perspectives

NASA Technical Reports Server (NTRS)

Fuhrmann, Christopher M.; Hall, Dorothy K.; Perry, L. Baker; Riggs, George A.

2010-01-01

Snow mapping is a common practice in regions that receive large amounts of snowfall annually, have seasonally-continuous snow cover, and where snowmelt contributes significantly to the hydrologic cycle. Although higher elevations in the southern Appalachian Mountains average upwards of 100 inches of snow annually, much of the remainder of the Southeast U.S. receives comparatively little snowfall (< 10 inches). Recent snowy winters in the region have provided an opportunity to assess the fine-grained spatial distribution of snow cover and the physical processes that act to limit or improve its detection across the Southeast. In the present work, both in situ and remote sensing data are utilized to assess the spatial distribution of snow cover for a sample of recent snowfall events in North Carolina. Specifically, this work seeks to determine how well ground measurements characterize the fine-grained patterns of snow cover in relation to Moderate- Resolution Imaging Spectroradiometer (MODIS) snow cover products (in this case, the MODIS Fractional Snow Cover product).

Nature of the Martian surface as inferred from the particle-size distribution of lunar-surface material.

NASA Technical Reports Server (NTRS)

Mason, C. C.

1971-01-01

Analysis of lunar particle size distribution data indicates that the surface material is composed of two populations. One population is caused by comminution from the impact of the larger-sized meteorites, while the other population is caused by the melting of fine material by the impact of smaller-sized meteorites. The results are referred to Mars, and it is shown that the Martian atmosphere would vaporize the smaller incoming meteorites and retard the incoming meteorites of intermediate and large size, causing comminution and stirring of the particulate layer. The combination of comminution and stirring would result in fine material being sorted out by the prevailing circulation of the Martian atmosphere and the material being transported to regions where it could be deposited. As a result, the Martian surface in regions of prevailing upward circulation is probably covered by either a rubble layer or by desert pavement; regions of prevailing downward circulation are probably covered by sand dunes.

Variations in fluvial style in the Westwater Canyon Member, Morrison formation (Jurassic), San Juan basin, Colorado plateau

USGS Publications Warehouse

Miall, A.D.; Turner-Peterson, C. E.

1989-01-01

Techniques of architectural element analysis and lateral profiling have been applied to the fluvial Westwater Canyon Member of the Morrison Formation (Jurassic) in southern San Juan Basin. On a large scale, the sandstone-body architecture consists mainly of a series of tabular sandstone sheets 5-15 m thick and hundreds of meters wide, separated by thin fine-grained units. Internally these sheets contain lateral accretion surfaces and are cut by channels 10-20 m deep and at least 250 m wide. On a more detailed scale, interpretations made from large-scale photomosaics show a complex of architectural elements and bounding surfaces. Typical indicators of moderate- to high-sinuosity channels (lateral accretion deposits) coexist in the same outcrop with downstream-accreted macroform deposits that are typical of sand flats of low-sinuosity, multiple-channel rivers. Broad, deep channels with gently to steeply dipping margins were mapped in several of the outcrops by carefully tracing major bounding surfaces. Locally thick accumulations of plane-laminated and low-angle cross-laminated sandstone lithofacies suggest rapid flow, probably transitional to upper flow regime conditions. Such a depositional style is most typical of ephemeral rivers or those periodically undergoing major seasonal (or more erratic) stage fluctuations, an interpretation consistent with independent mineralogical evidence of aridity. Fining-upward sequences are rare in the project area, contrary to the descriptions of Campbell (1976). The humid alluvial fan model of Galloway (1978) cannot be substantiated and, similarly, the architectural model of Campbell (1976) requires major revision. Comparisons with the depositional architecture of the large Indian rivers, such as the Ganges and Brahmaputra, still seem reasonable, as originally proposed by Campbell (1976), although there is now convincing evidence for aridity and for major stage fluctuations, which differs both from those modern rivers and Campbell's interpretation. ?? 1989.

Recognition, correlation, and hierarchical stacking patterns of cycles in the Ferry Lake - Uppe Glen Rose, East Texas Basin: Implications for grainstone reservoir distribution

DOE Office of Scientific and Technical Information (OSTI.GOV)

Fitchen, W.M.; Bebout, D.G.; Hoffman, C.L.

1994-12-31

Core descriptions and regional log correlation/interpretation of Ferry Lake-Upper Glen Rose strata in the East Texas Basin exhibit the uniformity of cyclicity in these shelf units. The cyclicity is defined by an upward decrease in shale content within each cycle accompanied by an upward increase in anhydrite (Ferry Lake) or carbonate (Upper Glen Rose). Core-to-log calibration of facies indicates that formation resistivity is inversely proportional to shale content and thus is a potential proxy for facies identification beyond core control. Cycles (delineated by resistivity log patterns) were correlated for 90 mi across the shelf; they show little change in logmore » signature despite significant updip thinning due to the regional subsidence gradient. The Ferry-Lake-Upper Glen Rose intervals is interpreted as a composite sequence composed of 13 high-frequency sequences (4 in the Ferry Lake and 9 in the Upper Glen Rose). High-frequency sequences contain approximately 20 ({+-}5) cycles; in the Upper Glen Rose, successive cycles exhibit decreasing proportions of shale and increasing proportions of grain-rich carbonate. High-frequency sequences were terminated by terrigenous inundation, possibly preceded by subaerial exposure. Cycle and high-frequency sequence composition is interpreted to reflect composite, periodic(?) fluctuations is terrigeneous dilution from nearby source areas. Grainstones typically occur (stratigraphically) within the upper cycles of high-frequency sequences, where terrigeneous dilution and turbidity were least and potential for carbonate production and shoaling was greatest. Published mid-Cretaceous geographic reconstructions and climate models suggest that precipitation and runoff in the area were controlled by the seasonal amplitude in solar insolation. In this model, orbital variations, combined with subsidence, hydrography, and bathymetry, were in primary controls on Ferry Lake-Upper Glen Rose facies architecture and stratigraphic development.« less

Women's Occupational Career Patterns over 27 Years: Relations to Family of Origin, Life Careers, and Wellness

ERIC Educational Resources Information Center

Huang, Qinghai; Sverke, Magnus

2007-01-01

This study aimed at identifying and describing occupational career patterns (OCPs) from age 16 to 43 by applying optimal matching techniques to sequence data obtained from a sample of Swedish women. Women's occupational trajectories were found to be diverse. Upward mobility (3 patterns) and stable careers (4 patterns) were prevalent, but there…

Microbial Genomes Multiply

NASA Technical Reports Server (NTRS)

Doolittle, Russell F.

2002-01-01

The publication of the first complete sequence of a bacterial genome in 1995 was a signal event, underscored by the fact that the article has been cited more than 2,100 times during the intervening seven years. It was a marvelous technical achievement, made possible by automatic DNA-sequencing machines. The feat is the more impressive in that complete genome sequencing has now been adopted in many different laboratories around the world. Four years ago in these columns I examined the situation after a dozen microbial genomes had been completed. Now, with upwards of 60 microbial genome sequences determined and twice that many in progress, it seems reasonable to assess just what is being learned. Are new concepts emerging about how cells work? Have there been practical benefits in the fields of medicine and agriculture? Is it feasible to determine the genomic sequence of every bacterial species on Earth? The answers to these questions maybe Yes, Perhaps, and No, respectively.

Two Related Parametric Integrals

ERIC Educational Resources Information Center

Dana-Picard, T.

2007-01-01

Two related sequences of definite integrals are considered. By mixing hand-work, computer algebra system assistance and websurfing, fine connections can be studied between integrals and a couple of interesting sequences of integers. (Contains 4 tables.)

[Fine mapping of complex disease susceptibility loci].

PubMed

Song, Qingfeng; Zhang, Hongxing; Ma, Yilong; Zhou, Gangqiao

2014-01-01

Genome-wide association studies (GWAS) using single nucleotide polymorphism (SNP) markers have identified more than 3800 susceptibility loci for more than 660 diseases or traits. However, the most significantly associated variants or causative variants in these loci and their biological functions have remained to be clarified. These causative variants can help to elucidate the pathogenesis and discover new biomarkers of complex diseases. One of the main goals in the post-GWAS era is to identify the causative variants and susceptibility genes, and clarify their functional aspects by fine mapping. For common variants, imputation or re-sequencing based strategies were implemented to increase the number of analyzed variants and help to identify the most significantly associated variants. In addition, functional element, expression quantitative trait locus (eQTL) and haplotype analyses were performed to identify functional common variants and susceptibility genes. For rare variants, fine mapping was carried out by re-sequencing, rare haplotype analysis, family-based analysis, burden test, etc.This review summarizes the strategies and problems for fine mapping.

Evaluation of Hydraulically Significant Discontinuities in Dockum Group Mudrocks in Andrews County, Texas

NASA Astrophysics Data System (ADS)

Holt, R. M.; Kuszmaul, J. S.; Cao, S.; Powers, D. W.

2013-12-01

Triassic mudrocks of the Dockum Group (Cooper Canyon Formation) host four, below-grade landfills at the Waste Control Specialists (WSC) site in Andrews County, Texas, including: a hazardous waste landfill and three radioactive waste landfills. At the study site, the Dockum consists of mudrocks with sparse siltstone/sandstone interbeds that developed in a semi-arid environment from an ephemeral meandering fluvial system. Sedimentary studies reveal that the mudrocks are ancient floodplain vertisols (soils with swelling clays) and siltstone/sandstone interbeds are fluvial channel deposits that were frequently subaerially exposed. Rock discontinuities, including fractures and syndepositional slickensided surfaces, were mapped during the excavation of the WCS radioactive waste landfills along vertical faces prepared by the construction contractor. Face locations were selected to insure a sampled area with nearly complete vertical coverage for each landfill. Individual discontinuities were mapped and their strike, dip, length, roughness, curvature, staining, and evidence of displacement were described. In the three radioactive waste disposal landfills, over 1750 discontinuities across 35 excavated faces were mapped and described, where each face was nominally 8 to 10 ft tall and 50 to 100 ft long. Genetic units related to paleosol development were identified. On average, the orientation of the discontinuities was horizontal, and no other significant trends were observed. Mapping within the landfill excavations shows that most discontinuities within Dockum rocks are horizontal, concave upward, slickensided surfaces that developed in the depositional environment, as repeated wetting and drying cycles led to shrinking and swelling of floodplain vertisols. Fractures that showed staining (a possible indicator of past or present hydraulic activity) are rare, vertical to near-vertical, and occur mainly in, and adjacent to, mechanically stiff siltstone and sandstone interbeds. No interconnected fracture networks were observed during mapping. A series of pressurized air tests conducted in three pairs of vertical and three pairs of inclined boreholes were tested at depths, ranging from 40 to 215 feet below ground surface, also showed no evidence of fracture interconnection. Genetic units generally consist of fining upward sequences that show increasing pedogenic alteration upward. Arcuate, slickensided discontinuities are more abundant near the top of genetic units, while stained fractures are more common in the more mechanically competent materials near the base of genetic units. A statistical analysis of fractures and discontinuities revealed limited differences between most genetic units. A series of discrete fracture network models were developed to evaluate the uncertainty in our fracture observations. Slickensided discontinuities showing no evidence of staining or past fluid movement were excluded from the analysis. Monte Carlo simulations show no continuous fracture interconnections across the landfill depth intervals.

Engineering Promoter Architecture in Oleaginous Yeast Yarrowia lipolytica.

PubMed

Shabbir Hussain, Murtaza; Gambill, Lauren; Smith, Spencer; Blenner, Mark A

2016-03-18

Eukaryotic promoters have a complex architecture to control both the strength and timing of gene transcription spanning up to thousands of bases from the initiation site. This complexity makes rational fine-tuning of promoters in fungi difficult to predict; however, this very same complexity enables multiple possible strategies for engineering promoter strength. Here, we studied promoter architecture in the oleaginous yeast, Yarrowia lipolytica. While recent studies have focused on upstream activating sequences, we systematically examined various components common in fungal promoters. Here, we examine several promoter components including upstream activating sequences, proximal promoter sequences, core promoters, and the TATA box in autonomously replicating expression plasmids and integrated into the genome. Our findings show that promoter strength can be fine-tuned through the engineering of the TATA box sequence, core promoter, and upstream activating sequences. Additionally, we identified a previously unreported oleic acid responsive transcription enhancement in the XPR2 upstream activating sequences, which illustrates the complexity of fungal promoters. The promoters engineered here provide new genetic tools for metabolic engineering in Y. lipolytica and provide promoter engineering strategies that may be useful in engineering other non-model fungal systems.

Morphologic and stratigraphic evolution of muddy ebb-tidal deltas along a subsiding coast: Barataria Bay, Mississippi River delta

USGS Publications Warehouse

FitzGerald, D.M.; Kulp, M.; Penland, S.; Flocks, J.; Kindinger, J.

2004-01-01

The Barataria barrier coast formed between two major distributaries of the Mississippi River delta: the Plaquemines deltaic headland to the east and the Lafourche deltaic headland to the west. Rapid relative sea-level rise (1??03 cm year-1) and other erosional processes within Barataria Bay have led to substantial increases in the area of open water (> 775 km2 since 1956) and the attendant bay tidal prism. Historically, the increase in tidal discharge at inlets has produced larger channel cross-sections and prograding ebb-tidal deltas. For example, the ebb delta at Barataria Pass has built seaward > 2??2 km since the 1880s. Shoreline erosion and an increasing bay tidal prism also facilitated the formation of new inlets. Four major lithofacies characterize the Barataria coast ebb-tidal deltas and associated sedimentary environments. These include a proximal delta facies composed of massive to laminated, fine grey-brown to pale yellow sand and a distal delta facies consisting of thinly laminated, grey to pale yellow sand and silty sand with mud layers. The higher energy proximal delta deposits contain a greater percentage of sand (75-100%) compared with the distal delta sediments (60-80%). Associated sedimentary units include a nearshore facies consisting of horizontally laminated, fine to very fine grey sand with mud layers and an offshore facies that is composed of grey to dark grey, laminated sandy silt to silty clay. All facies coarsen upwards except the offshore facies, which fines upwards. An evolutionary model is presented for the stratigraphic development of the ebb-tidal deltas in a regime of increasing tidal energy resulting from coastal land loss and tidal prism growth. Ebb-tidal delta facies prograde over nearshore sediments, which interfinger with offshore facies. The seaward decrease in tidal current velocity of the ebb discharge produces a gradational contact between proximal and distal tidal delta facies. As the tidal discharge increases and the inlet grows in dimensions, the proximal and distal tidal delta facies prograde seawards. Owing to the relatively low gradient of the inner continental shelf, the ebb-tidal delta lithosome is presently no more than 5 m thick and is generally only 2-3 m in thickness. The ebb delta sediment is sourced from deepening of the inlet and the associated channels and from the longshore sediment transport system. The final stage in the model envisages erosion and segmentation of the barrier chain, leading to a decrease in tidal discharge through the former major inlets. This process ultimately results in fine-grained sedimentation seaward of the inlets and the encasement of the ebb-tidal delta lithosome in mud. The ebb-tidal deltas along the Barataria coast are distinguished from most other ebb deltas along sand-rich coasts by their muddy content and lack of large-scale stratification produced by channel cut-and-fills and bar migration. ?? 2004 International Association of Sedimentologists.

Lithofacies, Age, and Sequence Stratigraphy of the Carboniferous Lisburne Group in the Skimo Creek Area, Central Brooks Range

USGS Publications Warehouse

Dumoulin, Julie A.; Whalen, Michael T.; Harris, Anita G.

2008-01-01

The Lisburne Group, a mainly Carboniferous carbonate succession that is widely distributed across northern Alaska, contains notable amounts of oil and gas at Prudhoe Bay. Detailed studies of the Lisburne in the Skimo Creek area, central Brooks Range, delineate its lithofacies, age, conodont biofacies, depositional environments, and sequence stratigraphy and provide new data on its hydrocarbon source-rock and reservoir potential, as well as its thermal history, in this area. We have studied the Lisburne Group in two thrust sheets of the Endicott Mountains allochthon, herein called the Skimo and Tiglukpuk thrust sheets. The southern, Skimo Creek section, which is >900 m thick, is composed largely of even-bedded to nodular lime mudstone and wackestone intercalated with intervals of thin- to thick-bedded bioclastic packstone and grainstone. Some parts of the section are partially to completely dolomitized and (or) replaced by chert. A distinctive, 30-m-thick zone of black, organic-rich shale, lime mudstone, and phosphorite is exposed 170 m below the top of the Lisburne. The uppermost 40 m of section is also distinctive and made up of dark shale, lime mudstone, spiculite, and glauconitic grainstone. The northern, Tiglukpuk Creek section, which is similar to the Skimo Creek section but only ~760 m thick, includes more packstone and grainstone and less organic-rich shale. Analyses of conodonts and foraminifers indicate that both sections range in age from late Early Mississippian (Osagean) through Early Pennsylvanian (early Morrowan) and document a hiatus of at least 15 m.y. at the contact between the Lisburne and the overlying Siksikpuk Formation. No evidence of subaerial exposure was observed along this contact, which may represent a submarine erosional surface. Lithofacies and biofacies imply that the Lisburne Group in the study area was deposited mainly in midramp to outer-ramp settings. Deepest water strata are mud rich and formed below storm or fair-weather wave base on the outer ramp to outer midramp; shallowest facies are storm, sand-wave, and shoal deposits of the inner midramp to inner ramp. A relatively diverse, open-marine fauna occurs throughout much of the Lisburne in the study area, but some beds also contain clasts typical of more restricted, shallow-water environments that were likely transported seaward by storms and currents. Radiolarians are abundant in the shale and phosphorite unit at Skimo Creek and also occur in equivalent strata at Tiglukpuk Creek; high gamma-ray response and elevated total organic-carbon contents (max 5?8 weight percent) also characterize this unit at Skimo Creek. Lithologic, faunal, and geochemical data all suggest that these rocks formed mainly in an outer-ramp to basinal setting with low sedimentation rates, high productivity, and poorly oxygenated bottom water. Shale and mudstone at the top of the Lisburne Group accumulated in a similarly sediment starved, mainly outer ramp environment but lack comparable evidence for high nutrient and low oxygen levels during deposition. Vertical shifts in rock types and faunas delineate numerous parasequences and six probable third-order sequences in the study area; the same sequences are also recognized in the Lisburne Group to the east. Transgressive-system tracts in these sequences generally fine upward, whereas highstand-system tracts coarsen upward. Sequences in the Tiglukpuk Creek section are mostly thinner, contain thinner and more numerous parasequences, and accumulated in somewhat shallower settings than those in the Skimo Creek section. These differences reflect the more seaward position and, thus, increased accommodation space of the Skimo Creek section relative to the Tiglukpuk Creek section during deposition. Organic-rich calcareous shale in the shale and phosphorite unit has a cumulative thickness of at least 15 m and a lateral extent of >50 km; this lithology is the best potential hydrocarbon source rock in the Lisburne Group

Le Silurien de la région d'Oulad Abbou (Meseta occidentale, Maroc) : une sédimentation péritidale sous contrôle tectonique

NASA Astrophysics Data System (ADS)

Attou, Ahmed; Hamoumi, Naima

2004-07-01

In the Oulad Abbou syncline, western coastal Meseta, the Silurian deposits exhibit siliciclastic or mixed siliciclastic/carbonate tidal facies that recorded alkaline basalt flows and syn-sedimentary deformations. These facies are staked into peritidal shallowing upward sequences reflecting the evolution from an infratidal to a supratidal environment. These sequences recorded low-amplitude and high-frequency sea-level variations. The built-up of these rhythmic sequences is related to distensive tectonic that allowed the development of isolated platform from extensive siliciclastic influx. This tectonic event is well recorded in the palaeogeographic evolution of the northern Gondwana platform during the Lower Palaeozoic time. To cite this article: A. Attou, N. Hamoumi, C. R. Geoscience 336 (2004).

Method for making thick and/or thin film

DOEpatents

Pham, Ai Quoc; Glass, Robert S.

2004-11-02

A method to make thick or thin films a very low cost. The method is generally similar to the conventional tape casting techniques while being more flexible and versatile. The invention involves preparing a slip (solution) of desired material and including solvents such as ethanol and an appropriate dispersant to prevent agglomeration. The slip is then sprayed on a substrate to be coated using an atomizer which spreads the slip in a fine mist. Upon hitting the substrate, the solvent evaporates, leaving a green tape containing the powder and other additives, whereafter the tape may be punctured, cut, and heated for the desired application. The tape thickness can vary from about 1 .mu.m upward.

Depositional environments and paleogeography of the Upper Miocene Wassuk Group, west-central Nevada

USGS Publications Warehouse

Golia, R.T.; Stewart, John H.

1984-01-01

Fluvial and lacustrine deposits of the Miocene Wassuk Group, exposed in Coal Valley, west-central Nevada, are divided into five lithofacies: (1) diatomite, claystone, siltstone, and carbonaceous siltstone deposited in a lake with paludal conditions at the margin; (2) upward-coarsening sequences of sandstone deposited on a delta and fan-delta; (3) channel-form sandstone deposited on a distal braided alluvial plain; (4) clast-supported conglomerate deposited on a proxial braided alluvial plain or distal alluvial fan; and (5) matrix-supported conglomerate deposited on a distal to middle alluvial fan. Petrographic analysis records an upsection change from a predominantly andesitic to a predominantly plutonic provenance. This change, combined with the overall upward-coarsening of the Wassuk Group and the great thickness (2400 m) of the sequence, suggests active uplift and rapid subsidence during deposition of the group. Facies relationships and paleocurrent directions indicate source areas to the south, southeast and west of Coal Valley. The Miocene Wassuk Group was deposited in an intra-arc basin with penecontemporaneous volcanism and tectonic activity. Syndepositional faulting at the southern margin of Coal Valley between 13 and 11 m.y. ago suggests an early episode of northeast-southwest extension prior to the onset of east-west basin and range extension. ?? 1984.

Sedimentary and rock magnetic signatures and event scenarios of deglacial outburst floods from the Laurentian Channel Ice Stream

NASA Astrophysics Data System (ADS)

Leng, Wei; von Dobeneck, Tilo; Bergmann, Fenna; Just, Janna; Mulitza, Stefan; Chiessi, Cristiano M.; St-Onge, Guillaume; Piper, David J. W.

2018-04-01

Eastern Canadian margin sediments bear testimony to several catastrophic deglacial meltwater discharges from the retreating Laurentide Ice Sheet. The reddish-brown plumite layers deposited on the levees of the Laurentian Fan valleys have been recognized as indications of multiple outburst floods between Heinrich events 2 and 1. Five event layers have been consistently recorded in three new gravity cores retrieved on the SW Grand Banks slope and comply with the previously published Laurentian Fan core MD95-2029. The apparently huge extent of these outburst plumes around the Laurentian Fan as well as their causes and consequences are investigated in this study using physical properties, rock magnetic and grain-size analyses, together with seismoacoustic profiling. We provide the first detailed 14C ages of the outburst event sequence and discuss their recurrence intervals in the context of regional ice retreat. Compared to the hemipelagic interlayers, event layers have overall uniform and systematic changes of rock-magnetic properties. Hematite contents increase over time and proximally while magnetite grain sizes fine upwards and spatially away from the fan. Based on the sediment composition and load, we argue that these plumites were formed by recurrent erosion of glacial mud deposits in the Laurentian Channel by meltwater outbursts. Three alternative glaciological scenarios are evaluated: in each case, the provenance of the transported sediment is not an indicator of the precise source of the meltwater.

Transport and deposition processes of the hydrothermal blast of the 6 August 2012 Te Maari eruption, Mt. Tongariro

NASA Astrophysics Data System (ADS)

Breard, E. C. P.; Lube, G.; Cronin, S. J.; Valentine, G. A.

2015-11-01

The 2012 eruption of Tongariro volcano (New Zealand) produced highly mobile, low-temperature, blast-derived pyroclastic density currents after partial collapse of the western flank of the Upper Te Maari crater. Despite a low volume (340,000 m3), the flows traveled up to 2.5 km from source, covering a total area of 6.1 km2. Along one of the blast axes, freshly exposed, proximal-to-distal sedimentary structures and grain-size data suggest emplacement of the fining upward tripartite depositional sequence (massive, stratified, and laminated) under a dilute and strongly longitudinally zoned turbulent density current. While the zoning formed in the deposit in the first 1500 m of runout, the current progressively waned to the extent where it transported a nearly homogenous grain-size mixture at the liftoff position. Our data indicate that after the passage of an erosive flow front, massive unit A was deposited under a rapid-suspension sedimentation regime. Unit B was deposited under a traction-dominated regime generated by a subsequent portion of the flow moving at lower velocities and with lower sediment transport capacity than the portion depositing unit A. The final and slowest flow zone deposited the finest particles under weakly tractive conditions. Transport and emplacement dynamics inferred in this study show strong similarities between hydrothermal explosions, magmatic blasts, and high-energy dilute PDCs. The common occurrence of hydrothermal fields on volcanic flanks points to this hazard being an under-appreciated one at stratovolcanoes worldwide.

Hydrogeology of the Canal Creek area, Aberdeen Proving Ground, Maryland

USGS Publications Warehouse

Oliveros, J.P.; Vroblesky, D.A.

1989-01-01

Geologic and borehole geophysical logs made at 77 sites show that the hydrogeologic framework of the study area consists of a sequence of unconsolidated sediments typical of the Coastal Plain of Maryland. Three aquifers and two confining units were delineated within the study area. From the surface down, they are: (1) the surficial aquifer; (2) the upper confining unit; (3) the Canal Creek aquifer; (4) the lower confining unit; and (5) the lower confined aquifer. The aquifer materials range from fine sand to coarse sand and gravel. Clay lenses were commonly found interfingered with the sand, isolating parts of the aquifers. All the units are continuous throughout the study area except for the upper confining unit, which crops out within the study area but is absent in updip outcrops. The unit also is absent within a Pleistocene paleochannel, where it has been eroded. The surficial and Canal Creek aquifers are hydraulically connected where the upper confining unit is absent, and a substantial amount of groundwater may flow between the two aquifers. Currently, no pumping stresses are known to affect the aquifers within the study area. Under current conditions, downward vertical hydraulic gradients prevail at topographic highs, and upward gradients typically prevail near surface-water bodies. Regionally, the direction of groundwater flow in the confined aquifers is to the east and southeast. Significant water level fluctuations correspond with seasonal variations in rainfall, and minor daily fluctuations reflect tidal cycles. (USGS)

Vertical migration of fine-grained sediments from interior to surface of seabed driven by seepage flows-`sub-bottom sediment pump action'

NASA Astrophysics Data System (ADS)

Zhang, Shaotong; Jia, Yonggang; Wen, Mingzheng; Wang, Zhenhao; Zhang, Yaqi; Zhu, Chaoqi; Li, Bowen; Liu, Xiaolei

2017-02-01

A scientific hypothesis is proposed and preliminarily verified in this paper: under the driving of seepage flows, there might be a vertical migration of fine-grained soil particles from interior to surface of seabed, which is defined as `sub-bottom sediment pump action' in this paper. Field experiments were performed twice on the intertidal flat of the Yellow River delta to study this process via both trapping the pumped materials and recording the pore pressures in the substrate. Experimental results are quite interesting as we did observe yellow slurry which is mainly composed of fine-grained soil particles appearing on the seabed surface; seepage gradients were also detected in the intertidal flat, under the action of tides and small wind waves. Preliminary conclusions are that `sediment pump' occurs when seepage force exceeds a certain threshold: firstly, it is big enough to disconnect the soil particles from the soil skeleton; secondly, the degree of seabed fluidization or bioturbation is big enough to provide preferred paths for the detached materials to migrate upwards. Then they would be firstly pumped from interior to the surface of seabed and then easily re-suspended into overlying water column. Influential factors of `sediment pump' are determined as hydrodynamics (wave energy), degree of consolidation, index of bioturbation (permeability) and content of fine-grained materials (sedimentary age). This new perspective of `sediment pump' may provide some implications for the mechanism interpretation of several unclear geological phenomena in the Yellow River delta area.

Giant Scour on Eel Fan, California Records Decadal Trubidite Recurrence Interval

NASA Astrophysics Data System (ADS)

Paull, C. K.; McGann, M.; Edwards, B. D.; Barnes, P.; Gwiazda, R.; Lundsten, E. M.; Anderson, K.; Sumner, E.; Caress, D. W.

2013-12-01

Analysis of an exceptional exposure of thinly bedded turbidites in the headwall of a giant submarine scour on Eel Submarine Fan reveals that turbidites were being emplaced with a remarkably high frequency during the late Pleistocene to early Holocene. ROV observations, vibracores and push cores show an 87 m thick outcrop of fine-grained turbidites that are between 3 and 40 cm thick. The turbidites are composed of fining-upwards cycles grading from fine or very fine sand through to silty-mud. Within turbidites reversals in grain size occur representing fluctuating flow conditions. An abundance of woody material and shallow dwelling foraminifera within the turbidites demonstrates the flows originated in shallow water. The silty-mud horizons are barren of pelagic foraminifera, suggesting that they are the late stages of turbidites and that intervening hemipelagic material is absent. Twenty-one 14C measurements made on the transported shallow-water foraminifera and wood fragments within eighteen push cores taken from the scarp reveal that the entire 87 m section was deposited 6 to 14 thousand years BP. Shipboard video observations indicate the appearance of the scarp face is similar throughout the exposed face. In a 10 m section with excellent video, 88 turbidites were counted. Assuming that the entire 87 m face comprises the same rhythmic alterations, more than 766 turbidites were deposited during this ~8,000 year interval. This requires a decadal turbidite recurrence interval. As these deposits are downstream of the Eel River, these data have intriguing implications about the enhanced impact of the Eel River during the late Pleistocene and early Holocene.

Sequence stratigraphic control on prolific HC reservoir development, Southwest Iran

USGS Publications Warehouse

Lasemi, Y.; Kondroud, K.N.

2008-01-01

An important carbonate formation in the Persian Gulf and the onshore oil fields of Southwest Iran is the Lowermost Cretaceous Fahliyan formation. The formation in Darkhowain field consists of unconformity-bounded depositional sequences containing prolific hydrocarbon reservoirs of contrasting origin. Located in the high stand systems tract (HST) of the lower sequence encompassing over 200m of oil column are the most prolific reservoir. Another reservoir is over 80m thick consisting of shallowing-upward cycles that are best developed within the transgressive systems tract of the upper sequence. Vertical facies distribution and their paleobathymetry and geophysical log signatures of the Fahliyan formation in the Darkhowain platform reveal the presence of two unconformity-bounded depositional sequences in Vail et al., Van Wagoner et al., and Sarg. The Fahliyan formation mainly consists of platform carbonates composed of restricted bioclastic lime mudstone to packstone of the platform interior, Lithocodium boundstone or ooid-intraclast-bioclast grainstone of the high energy platform margin and the bioclast packstone to lime mudstone related to the off-platform setting.

Mudstone sedimentation at high latitudes: Ice as a transport medium for mud and supplier of nutrients

USGS Publications Warehouse

Macquaker, J.H.S.; Keller, M.A.

2005-01-01

Controls on mudstone deposition at high latitudes are poorly known relative to low latitudes. In recent sediments deposited in these environments, ice significantly influences sediment transport and primary productivity. The products of ice transport are relatively well known in glacimarine settings, but are less well known from below melting sea ice. This latter setting is significant as today it is associated with high primary organic productivity. The aim of this study is to assess how sea ice might have controlled lithofacies variability and organic-matter distribution and preservation in an ancient marine, siliciclastic mudstone-dominated succession deposited at high latitudes. Combined sedimentary logging, optical and electron optical (back-scatte red electron imagery), geochemical, and isotopic methods were used to determine sample variability in forty-five samples collected from the Lower Cretaceous succession in the Mikkelsen Bay State #1 borehole (North Slope, Alaska). The succession overall fines upward and contains muddy sandstones and sand- and silt-bearing, clay-rich mudstones towards its base in contrast to clay-rich and clay-dominated mudstones towards its top. Some of the mudstone units exhibit thin (< 5 mm), relic-beds that fine upward weakly. In some units small (0.5 mm), bed-parallel silt-filled microburrows disrupt depositional laminae whereas in others pervasive burrowing completely obliterates original depositional textures. Many of the units are pelleted. These mudstones are unusual in that they contain minor but very striking outsize grains, composed of subrounded to rounded sand and granule-size material. In addition, they are good petroleum source rocks, with between 2.8 and 5.9 wt % total organic carbon, of predominantly Type II kerogen. The organic matter has an isotopic signature ranging from -25.4??? ??13C to -28.1??? ??13C. Thin tuffs (< 20 mm) and carbonate-cemented units are also present. Given the absence of significant polar ice in the Early Cretaceous the outsized grains are interpreted to have been deposited from a combination of melting, dirty anchor, and fast ice. The mud fraction, which forms the bulk of the sediment, is interpreted to have been deposited from melting, sediment-laden frazil ice, and fast ice. After deposition sediments were partially reworked by bottom currents generated by brine rejection during sea ice formation. Sympagic organisms, grazing on algae and bacteria both within and below the ice, pelleted the sediment. Bioturbation, which varies through the succession, indicates that sedimentation probably occurred beneath a predominantly oxic or dysoxic water column. In this setting productivity was fueled by nutrients released from melting sea ice in the marginal ice zone. The good petroleum source potential of these mudstones is attributed to high organic productivity coupled to episodic and rapid sedimentation rather than existence of bottom-water anoxia linked to upwelling. Because sea-ice rafting was probably the dominant sediment transport mechanism it is not appropriate to use sequence stratigraphic methodology to predict lithofacies variability in this environment. Copyright ?? 2005, SEPM (Society for Sedimentary Geology).

Sequence of structures in fine-grained turbidites: Comparison of recent deep-sea and ancient flysch sediments

NASA Astrophysics Data System (ADS)

Stow, Dorrik A. V.; Shanmugam, Ganapathy

1980-01-01

A comparative study of the sequence of sedimentary structures in ancient and modern fine-grained turbidites is made in three contrasting areas. They are (1) Holocene and Pleistocene deep-sea muds of the Nova Scotian Slope and Rise, (2) Middle Ordovician Sevier Shale of the Valley and Ridge Province of the Southern Appalachians, and (3) Cambro-Ordovician Halifax Slate of the Meguma Group in Nova Scotia. A standard sequence of structures is proposed for fine-grained turbidites. The complete sequence has nine sub-divisions that are here termed T 0 to T 8. "The lower subdivision (T 0) comprises a silt lamina which has a sharp, scoured and load-cast base, internal parallel-lamination and cross-lamination, and a sharp current-lineated or wavy surface with 'fading-ripples' (= Type C etc. …)." (= Type C ripple-drift cross-lamination, Jopling and Walker, 1968). The overlying sequence shows textural and compositional grading through alternating silt and mud laminae. A convolute-laminated sub-division (T 1) is overlain by low-amplitude climbing ripples (T 2), thin regular laminae (T 3), thin indistinct laminae (T 4), and thin wipsy or convolute laminae (T 5). The topmost three divisions, graded mud (T 6), ungraded mud (T 7) and bioturbated mud (T 8), do not have silt laminae but rare patchy silt lenses and silt pseudonodules and a thin zone of micro-burrowing near the upper surface. The proposed sequence is analogous to the Bouma (1962) structural scheme for sandy turbidites and is approximately equivalent to Bouma's (C)DE divisions. The repetition of partial sequences characterizes different parts of the slope/base-of-slope/basin plain environment, and represents deposition from different stages of evolution of a large, muddy, turbidity flow. Microstructural detail and sequence are well preserved in ancient and even slightly metamorphosed sediments. Their recognition is important for determining depositional processes and for palaeoenvironmental interpretation.

Light-absorbing oligomer formation in secondary organic aerosol from reactive uptake of isoprene epoxydiols.

PubMed

Lin, Ying-Hsuan; Budisulistiorini, Sri Hapsari; Chu, Kevin; Siejack, Richard A; Zhang, Haofei; Riva, Matthieu; Zhang, Zhenfa; Gold, Avram; Kautzman, Kathryn E; Surratt, Jason D

2014-10-21

Secondary organic aerosol (SOA) produced from reactive uptake and multiphase chemistry of isoprene epoxydiols (IEPOX) has been found to contribute substantially (upward of 33%) to the fine organic aerosol mass over the Southeastern U.S. Brown carbon (BrC) in rural areas of this region has been linked to secondary sources in the summer when the influence of biomass burning is low. We demonstrate the formation of light-absorbing (290 < λ < 700 nm) SOA constituents from reactive uptake of trans-β-IEPOX onto preexisting sulfate aerosols as a potential source of secondary BrC. IEPOX-derived BrC generated in controlled chamber experiments under dry, acidic conditions has an average mass absorption coefficient of ∼ 300 cm(2) g(-1). Chemical analyses of SOA constituents using UV-visible spectroscopy and high-resolution mass spectrometry indicate the presence of highly unsaturated oligomeric species with molecular weights separated by mass units of 100 (C5H8O2) and 82 (C5H6O) coincident with the observations of enhanced light absorption, suggesting such oligomers as chromophores, and potentially explaining one source of humic-like substances (HULIS) ubiquitously present in atmospheric aerosol. Similar light-absorbing oligomers were identified in fine aerosol collected in the rural Southeastern U.S., supporting their atmospheric relevance and revealing a previously unrecognized source of oligomers derived from isoprene that contributes to ambient fine aerosol mass.

Is cratonic sedimentation consistent with available models? An example from the Upper Proterozoic of the West African craton

NASA Astrophysics Data System (ADS)

Bertrand-Sarfati, Janine; Moussine-Pouchkine, Alexis

1988-08-01

The Atar Group, part of the Upper Proterozoic sequence covering the West African craton, stable since 2000 Ma, is characterized by an alternation of extensive carbonate beds and mixed siliciclastic and carbonate facies. The carbonate beds comprise essentially columnar stromatolite biostromes and bioherms which reflect sublittoral environments. The mixed facies contain a variety of laterally discontinuous facies which imply more variable environmental conditions. The settings of the mixed facies are not always clear but they do not contain thick sequences of high-energy facies. Few obvious facies sequences are discernable; those that are present are considered to be punctuated aggradational cycles (PACs) and they always start with biostromes of columnar stromatolites with very few sediments. Composite sequences are interpreted as due to shallowing upward or increasing energy environments that may be laterally contiguous, despite the fact that the contacts are not gradational. However, much of the stratigraphic sequence cannot be subdivided into cycles and seems to consist of unrelated individual facies, bound by sharp boundaries. The basin analysis reveals that biostromes of columnar stromatolites start after an instantaneous geological event corresponding to a sea-level rise. Consequently, their appearance can be considered as a time-line. We describe, in the Atar Group and its equivalents, three sedimentation trends, all of which are interpreted to be of shallowing upward character. The Atar Group appears to have been deposited in an epeiric sea (i.e. an extremely flat ramp). There are two contrasting styles of sedimentation: (1) after the submergence of the whole area, columnar stromatolites built extensive biostromes; (2) during the stable phase, sediments are deposited in a mosaic of laterally-discontinuous facies. Tidal influence cannot be recognized in the sequence, neither can a salinity increase toward the land; both common features in published epeiric sea models. A cratonic sedimentation area such as this is characterized by its size and flatness. Only during the stable phase of the cycle does small-scale topographic relief lead to deposition of a mosaic of facies. The sedimentation is storm- and wave-dominated.

Sedimentology and architecture of De Geer moraines in the western Scottish Highlands, and implications for grounding-line glacier dynamics

NASA Astrophysics Data System (ADS)

Golledge, Nicholas R.; Phillips, Emrys

2008-07-01

Sedimentary exposures in moraines in a Scottish Highland valley (Glen Chaorach), reveal stacked sequences of bedded and laminated silt, sand and gravel, interspersed or capped with diamicton units. In four examples, faults and folds indicate deformation by glaciotectonism and syndepositional loading. We propose that these sediments were laid down in an ice-dammed lake, close to the last ice margin to occupy this glen. Individual units within cross-valley De Geer moraine ridges are interpreted by comparison with examples from similar environments elsewhere: stratified diamictons containing laminated or bedded lenses are interpreted as subaqueous ice-marginal debris-flow deposits; massive fine-grained deposits as hyperconcentrated flow deposits, and massive gravel units as high-density debris-flow deposits. Using an allostratigraphic approach we argue that glaciotectonically deformed coarsening-upward sand and gravel sequences that culminate in deposition of subglacial diamicton represent glacier advances into the ice-marginal lake, whereas undisturbed cross-bedded sand and gravel reflects channel or fan deposits laid down during glacier retreat. A flat terrace of bedded sand and gravel at the northern end of Glen Chaorach is interpreted as subaerial glaciofluvial outwash. On the basis of these inferences we propose the following three stage deglacial event chronology for Glen Chaorach. During glacier recession, ice separation and intra-lobe ponding first led to subaquaeous deposition of sorted and unsorted facies. Subsequent glacier stabilisation and ice-marginal oscillation produced glaciotectonic structures in the ice-marginal sediment pile and formed De Geer moraines. Finally, drainage of the ice-dammed lake allowed a subaerial ice-marginal drainage system to become established. Throughout deglaciation, deposition within the lake was characterized by abrupt changes in grain size and in the architecture of individual sediment bodies, reflecting changing delivery paths and sediment supply, and by dynamic margin oscillations typical of water-terminating glaciers.

Reducing Problems in Fine Motor Development among Primary Children through the Use of Multi-Sensory Techniques.

ERIC Educational Resources Information Center

Wessel, Dorothy

A 10-week classroom intervention program was implemented to facilitate the fine-motor development of eight first-grade children assessed as being deficient in motor skills. The program was divided according to five deficits to be remediated: visual motor, visual discrimination, visual sequencing, visual figure-ground, and visual memory. Each area…

Characterization of physical mass transport through oil sands fluid fine tailings in an end pit lake: a multi-tracer study.

PubMed

Dompierre, Kathryn A; Barbour, S Lee

2016-06-01

Soft tailings pose substantial challenges for mine reclamation due to their high void ratios and low shear strengths, particularly for conventional terrestrial reclamation practices. Oil sands mine operators have proposed the development of end pit lakes to contain the soft tailings, called fluid fine tailings (FFT), generated when bitumen is removed from oil sands ore. End pit lakes would be constructed within mined-out pits with FFT placed below the lake water. However, the feasibility of isolating the underlying FFT has yet to be fully evaluated. Chemical constituents of interest may move from the FFT into the lake water via two key processes: (1) advective-diffusive mass transport with upward pore water flow caused by settling of the FFT; and (2) mixing created by wind events or unstable density profiles through the lake water and upper portion of the FFT. In 2013 and 2014, temperature and stable isotopes of water profiles were measured through the FFT and lake water in the first end pit lake developed by Syncrude Canada Ltd. Numerical modelling was undertaken to simulate these profiles to identify the key mechanisms controlling conservative mass transport in the FFT. Shallow mixing of the upper 1.1 m of FFT with lake water was required to explain the observed temperature and isotopic profiles. Following mixing, the re-establishment of both the temperature and isotope profiles required an upward advective flux of approximately 1.5 m/year, consistent with average FFT settling rates measured at the study site. These findings provide important insight on the ability to sequester soft tailings in an end pit lake, and offer a foundation for future research on the development of end pit lakes as an oil sands reclamation strategy. Copyright © 2016 Elsevier B.V. All rights reserved.

The effect of paleotopography on lithic distribution and facies associations of small volume ignimbrites: the WTT Cupa (Roccamonfina volcano, Italy)

NASA Astrophysics Data System (ADS)

Giordano, Guido

1998-12-01

The distribution of lithic clasts within two trachytic, small volume, pumiceous ignimbrites are described from the Quaternary `White Trachytic Tuff Cupa' formation of Roccamonfina volcano, Italy. The ignimbrites show a downslope grading of lithics, with a maximum size where there is a major break in the volcano's slope, rather than at proximal locations. This is also the location where ignimbrites are thickest and most massive. The break in slope is interpreted to have reduced flow capacity and velocity, increasing the sedimentation rate, so that massive ignimbrite formed by hindered settling sedimentation. Ignimbrite Cc, exhibits no vertical grading of lithics, though it does show downslope grading with maximum size at the major break in slope and a rapid decrease further downslope. Ignimbrite Cc thins away from the break in slope, and shows an upward fining of the grain size within the topmost few decimeters of the unit. The ignimbrite is stratified proximally, and grades to massive facies at the break in slope, and distally to stratified facies with numerous inverse-graded beds. The simplest mechanism accounting for these downslope variations is progressive aggradation from a quasi-steady, nonuniform pyroclastic density current. The changes in deposit thickness and facies are interpreted to record downcurrent changes in sedimentation rate. The upward fining reflects waning flow. Inversely graded, bedded depositional facies in distal areas is interpreted to reflect flow unsteadiness and a decrease in suspended sediment load. Ignimbrite Cd shows vertical, as well as downslope grading of lithics. This characteristic, coupled with the widespread massive facies of the deposit and the tabular unit geometry are features that can be reconciled with both the debris flow/plug analogy for pyroclastic flows ( Sparks, 1976) and the progressive aggradation model ( Branney and Kokelaar, 1992). However, none of them appears to satisfy completely the field evidences, implying that when dealing with massive ignimbrites, other evidence than lithic grading needs to be presented to better understand the related transport and depositional processes.

Three speech sounds, one motor action: evidence for speech-motor disparity from English flap production.

PubMed

Derrick, Donald; Stavness, Ian; Gick, Bryan

2015-03-01

The assumption that units of speech production bear a one-to-one relationship to speech motor actions pervades otherwise widely varying theories of speech motor behavior. This speech production and simulation study demonstrates that commonly occurring flap sequences may violate this assumption. In the word "Saturday," a sequence of three sounds may be produced using a single, cyclic motor action. Under this view, the initial upward tongue tip motion, starting with the first vowel and moving to contact the hard palate on the way to a retroflex position, is under active muscular control, while the downward movement of the tongue tip, including the second contact with the hard palate, results from gravity and elasticity during tongue muscle relaxation. This sequence is reproduced using a three-dimensional computer simulation of human vocal tract biomechanics and differs greatly from other observed sequences for the same word, which employ multiple targeted speech motor actions. This outcome suggests that a goal of a speaker is to produce an entire sequence in a biomechanically efficient way at the expense of maintaining parity within the individual parts of the sequence.

GWASeq: targeted re-sequencing follow up to GWAS.

PubMed

Salomon, Matthew P; Li, Wai Lok Sibon; Edlund, Christopher K; Morrison, John; Fortini, Barbara K; Win, Aung Ko; Conti, David V; Thomas, Duncan C; Duggan, David; Buchanan, Daniel D; Jenkins, Mark A; Hopper, John L; Gallinger, Steven; Le Marchand, Loïc; Newcomb, Polly A; Casey, Graham; Marjoram, Paul

2016-03-03

For the last decade the conceptual framework of the Genome-Wide Association Study (GWAS) has dominated the investigation of human disease and other complex traits. While GWAS have been successful in identifying a large number of variants associated with various phenotypes, the overall amount of heritability explained by these variants remains small. This raises the question of how best to follow up on a GWAS, localize causal variants accounting for GWAS hits, and as a consequence explain more of the so-called "missing" heritability. Advances in high throughput sequencing technologies now allow for the efficient and cost-effective collection of vast amounts of fine-scale genomic data to complement GWAS. We investigate these issues using a colon cancer dataset. After QC, our data consisted of 1993 cases, 899 controls. Using marginal tests of associations, we identify 10 variants distributed among six targeted regions that are significantly associated with colorectal cancer, with eight of the variants being novel to this study. Additionally, we perform so-called 'SNP-set' tests of association and identify two sets of variants that implicate both common and rare variants in the etiology of colorectal cancer. Here we present a large-scale targeted re-sequencing resource focusing on genomic regions implicated in colorectal cancer susceptibility previously identified in several GWAS, which aims to 1) provide fine-scale targeted sequencing data for fine-mapping and 2) provide data resources to address methodological questions regarding the design of sequencing-based follow-up studies to GWAS. Additionally, we show that this strategy successfully identifies novel variants associated with colorectal cancer susceptibility and can implicate both common and rare variants.

cuBLASTP: Fine-Grained Parallelization of Protein Sequence Search on CPU+GPU.

PubMed

Zhang, Jing; Wang, Hao; Feng, Wu-Chun

2017-01-01

BLAST, short for Basic Local Alignment Search Tool, is a ubiquitous tool used in the life sciences for pairwise sequence search. However, with the advent of next-generation sequencing (NGS), whether at the outset or downstream from NGS, the exponential growth of sequence databases is outstripping our ability to analyze the data. While recent studies have utilized the graphics processing unit (GPU) to speedup the BLAST algorithm for searching protein sequences (i.e., BLASTP), these studies use coarse-grained parallelism, where one sequence alignment is mapped to only one thread. Such an approach does not efficiently utilize the capabilities of a GPU, particularly due to the irregularity of BLASTP in both execution paths and memory-access patterns. To address the above shortcomings, we present a fine-grained approach to parallelize BLASTP, where each individual phase of sequence search is mapped to many threads on a GPU. This approach, which we refer to as cuBLASTP, reorders data-access patterns and reduces divergent branches of the most time-consuming phases (i.e., hit detection and ungapped extension). In addition, cuBLASTP optimizes the remaining phases (i.e., gapped extension and alignment with trace back) on a multicore CPU and overlaps their execution with the phases running on the GPU.

Downscaling future climate scenarios to fine scales for hydrologic and ecological modeling and analysis

USGS Publications Warehouse

Flint, Lorraine E.; Flint, Alan L.

2012-01-01

The methodology, which includes a sequence of rigorous analyses and calculations, is intended to reduce the addition of uncertainty to the climate data as a result of the downscaling while providing the fine-scale climate information necessary for ecological analyses. It results in new but consistent data sets for the US at 4 km, the southwest US at 270 m, and California at 90 m and illustrates the utility of fine-scale downscaling to analyses of ecological processes influenced by topographic complexity.

A Unified Model of Cloud-to-Ground Lightning Stroke

NASA Astrophysics Data System (ADS)

Nag, A.; Rakov, V. A.

2014-12-01

The first stroke in a cloud-to-ground lightning discharge is thought to follow (or be initiated by) the preliminary breakdown process which often produces a train of relatively large microsecond-scale electric field pulses. This process is poorly understood and rarely modeled. Each lightning stroke is composed of a downward leader process and an upward return-stroke process, which are usually modeled separately. We present a unified engineering model for computing the electric field produced by a sequence of preliminary breakdown, stepped leader, and return stroke processes, serving to transport negative charge to ground. We assume that a negatively-charged channel extends downward in a stepped fashion through the relatively-high-field region between the main negative and lower positive charge centers and then through the relatively-low-field region below the lower positive charge center. A relatively-high-field region is also assumed to exist near ground. The preliminary breakdown pulse train is assumed to be generated when the negatively-charged channel interacts with the lower positive charge region. At each step, an equivalent current source is activated at the lower extremity of the channel, resulting in a step current wave that propagates upward along the channel. The leader deposits net negative charge onto the channel. Once the stepped leader attaches to ground (upward connecting leader is presently neglected), an upward-propagating return stroke is initiated, which neutralizes the charge deposited by the leader along the channel. We examine the effect of various model parameters, such as step length and current propagation speed, on model-predicted electric fields. We also compare the computed fields with pertinent measurements available in the literature.

Dakota sandstone facies, western Oklahoma panhandle

DOE Office of Scientific and Technical Information (OSTI.GOV)

Atalik, E.; Mansfield, C.F.

The Cretaceous Dakota Sandstone in Cimarron County comprised three sandstone units and intervening mudrocks; it overlies the Kiowa Shale Member of the Purgatoire Formation. Deposits include shoreface, beach (foreshore) and dune, estuarine and tidal channel, marine marginal bay and swamp/marsh in a generally progradational sequences associated with marine regression in the Western Interior. The shoreface sand, characterized by ripple lamination, bioturbation and the trace fossils Teichichnus and Thalassinoides, is fine-grained, 5-10 m (15-30 ft) thick and grades into the underlying Kiowa Shale. Beach and associated dune deposits are 2-5 m (6-16 ft) thick, medium to fine-grained, medium to thick-bedded, tabular-planarmore » cross-bedded, and lenticular; cross-bed paleocurrent headings are northeasterly and northwesterly. Estuarine channel deposits are 3-5 m (10 to 16 ft) thick, trough to tabular-planar cross-bedded, and medium to coarse-grained with local conglomerate overlying the scoured base which commonly cuts into the Kiowa Shale or overlying shoreface sandstone; rip-up clasts and wood pieces are common but trace fossils are rare; southeasterly and southwesterly paleocurrents predominate. Tidal channel deposits are thinner (up to 2 m of 6 ft) and finer grained (medium to fine-grained) that the estuarine channel deposits; they occur within fine-grained sandstone and mudrock sequences, are trough cross-bedded, and commonly contain trace fossils (e.g., Skolithos) and wood fragments. Marine marginal (tidal flat or bay.) deposits comprise fine-grained sandstone, siltstone and interbedded shale, that are 1-3m (3-10 ft) thick with abundant burrows, small ripple marks, and parallel lamination. These grade into the fine to very fine-grained sandstones, siltstones, shales, and coals of the swamp/marsh deposits that are 1-5m (3-16 ft) thick and contain ripple marks, burrows, other trace fossils, and parallel lamination.« less

Mapping by sequencing in cotton (Gossypium hirsutum) line MD52ne identified candidate genes for fiber strength and its related quality attributes

USDA-ARS?s Scientific Manuscript database

Fiber strength, length, maturity and fineness determine the market value of cotton fibers and the quality of spun yarn. Cotton fiber strength has been recognized as a critical quality attribute in the modern textile industry. Fine mapping along with quantitative trait loci (QTL) validation and candi...

Tsunami sediments and their grain size characteristics

NASA Astrophysics Data System (ADS)

Sulastya Putra, Purna

2018-02-01

Characteristics of tsunami deposits are very complex as the deposition by tsunami is very complex processes. The grain size characteristics of tsunami deposits are simply generalized no matter the local condition in which the deposition took place. The general characteristics are fining upward and landward, poor sorting, and the grain size distribution is not unimodal. Here I review the grain size characteristics of tsunami deposit in various environments: swale, coastal marsh and lagoon/lake. Review results show that although there are similar characters in some environments and cases, but in detail the characteristics in each environment can be distinguished; therefore, the tsunami deposit in each environment has its own characteristic. The local geological and geomorphological condition of the environment may greatly affect the grain size characteristics.

A model of the plumes above basaltic fissure eruptions

NASA Astrophysics Data System (ADS)

Woods, Andrew W.

1993-06-01

A simple model of the ascent of the volatiles above basaltic fissure eruptions shows that atmospheric moisture may play an important role in injecting volatiles high into the atmosphere. As ambient water vapor is entrained and carried upwards by the plume, it decompresses and some condensation may occur. This causes the release of latent heat which heats up the air and thereby increases the buoyancy of the plume enabling it to ascend several kilometers higher than in a dry atmosphere. The height of such plumes also increases with the mass fraction of fine ash in the fountain. Although very simple, the model predictions are in accord with observations of plume heights during historical eruptions including the 1984 eruption of Mauna Loa.

78 FR 18326 - Agency Information Collection Activities; Comment Request; Upward Bound and Upward Bound Math...

Federal Register 2010, 2011, 2012, 2013, 2014

2013-03-26

...; Comment Request; Upward Bound and Upward Bound Math Science Annual Performance Report AGENCY: The Office... considered public records. Title of Collection: Upward Bound and Upward Bound Math Science Annual Performance...) and Upward Bound Math and Science (UBMS) Programs. The Department is requesting a new APR because of...

Early Depositional History of the Eocene Izu-Bonin Mariana Arc, Western Pacific Ocean

NASA Astrophysics Data System (ADS)

Waldman, R.; Marsaglia, K. M.; Tepley, F. J., III

2015-12-01

Expedition 351 of the International Ocean Discovery Program cored an Eocene section at Site U1438 in the Philippine Sea that provides insight into the early history of the Izu-Bonin arc. Subduction here is hypothesized to have initiated spontaneously, leaving a characteristic depositional sequence of post-subduction-initiation localized extension and volcanism. We conducted detailed macroscopic and microscopic study of the cores of the lowermost 100m of volcaniclastic and sedimentary rocks (Unit IV) directly overlying subduction initiation igneous basement, to identify depositional facies and trends. We subdivided Unit IV into three subunits based on lithologic characteristics. Transitions between the subunits are relatively abrupt, occurring within the length of a single core. The lowermost subunit (IVA) consists of 4 meters of laminated pelagic claystone with thin beds of graded volcaniclastic siltstone, and fine-grained tuff laminae composed of plagioclase feldspar and green-brown amphibole. The middle subunit (IVB) comprises 51 meters of texturally variable, thick-bedded, coarse-grained gravity flow deposits. These are composed of volcaniclastic sandstone and conglomerate containing glassy and tachylitic volcanic grains as well as sedimentary lithic fragments, along with traces of shallow-water carbonate bioclasts. Subunit IVB sediments are poorer in feldspar than IVA and contain only trace amphibole. They show variable grain rounding and an upsection increase in vitric components. Tachylite grains range from sub-angular to well rounded throughout, and other volcanic grain types show upward increases in angularity and vesicularity. The abrupt transition from pelagic sediments in subunit IVA to shallow-water-sourced gravity flows in subunit IVB suggests a rapid emergence of shallow-water to subaerial volcanic center early in the arc's development. The upper part of subunit IVB also contains igneous intrusions, providing possible evidence for more proximal volcanism at the site. Subunit IVC consists of 46 meters of fine-grained turbidites composed of tuffaceous siltstone, along with radiolarian mudstone and vitric tuff layers. Ongoing studies of the volcanic components will provide additional insight into the source(s) of volcanics throughout the arc's early development.

Skylab

NASA Image and Video Library

1973-01-01

Breaking the grip of the closed magnetic loops that constrain other gases around it, a spray of chromospheric material surges upward, free of the Sun. Views 1 through 5 were recorded about 5 minutes apart by Skylab and comprise a composite of separate images made in chromospheric (red), transition region (green), and coronal (blue) temperatures of an ultraviolet sequence that depicts a solar eruption. Eruption begins (view 2) as material in or near a small, compact loop develops enough energy to overcome the Sun's magnetic bonds.

Integrated approaches to terminal Proterozoic stratigraphy: an example from the Olenek Uplift, northeastern Siberia

NASA Technical Reports Server (NTRS)

Knoll, A. H.; Grotzinger, J. P.; Kaufman, A. J.; Kolosov, P.

1995-01-01

In the Olenek Uplift of northeastern Siberia, the Khorbusuonka Group and overlying Kessyusa and Erkeket formations preserve a significant record of terminal Proterozoic and basal Cambrian Earth history. A composite section more than 350 m thick is reconstructed from numerous exposures along the Khorbusuonka River. The Khorbusuonka Group comprises three principal sedimentary sequences: peritidal dolomites of the Mastakh Formation, which are bounded above and below by red beds; the Khatyspyt and most of the overlying Turkut formations, which shallow upward from relatively deep-water carbonaceous micrites to cross-bedded dolomitic grainstones and stromatolites; and a thin upper Turkut sequence bounded by karst surfaces. The overlying Kessyusa Formation is bounded above and below by erosional surfaces and contains additional parasequence boundaries internally. Ediacaran metazoans, simple trace fossils, and vendotaenids occur in the Khatyspyt Formation; small shelly fossils, more complex trace fossils, and acritarchs all appear near the base of the Kessyusa Formation and diversify upward. The carbon-isotopic composition of carbonates varies stratigraphically in a pattern comparable to that determined for other terminal Proterozoic and basal Cambrian successions. In concert, litho-, bio-, and chemostratigraphic data indicate the importance of the Khorbusuonka Group in the global correlation of terminal Proterozoic sedimentary rocks. Stratigraphic data and a recently determined radiometric date on basal Kessyusa volcanic breccias further underscore the significance of the Olenek region in investigations of the Proterozoic-cambrian boundary.

Integrated approaches to terminal Proterozoic stratigraphy: an example from the Olenek Uplift, northeastern Siberia.

PubMed

Knoll, A H; Grotzinger, J P; Kaufman, A J; Kolosov, P

1995-01-01

In the Olenek Uplift of northeastern Siberia, the Khorbusuonka Group and overlying Kessyusa and Erkeket formations preserve a significant record of terminal Proterozoic and basal Cambrian Earth history. A composite section more than 350 m thick is reconstructed from numerous exposures along the Khorbusuonka River. The Khorbusuonka Group comprises three principal sedimentary sequences: peritidal dolomites of the Mastakh Formation, which are bounded above and below by red beds; the Khatyspyt and most of the overlying Turkut formations, which shallow upward from relatively deep-water carbonaceous micrites to cross-bedded dolomitic grainstones and stromatolites; and a thin upper Turkut sequence bounded by karst surfaces. The overlying Kessyusa Formation is bounded above and below by erosional surfaces and contains additional parasequence boundaries internally. Ediacaran metazoans, simple trace fossils, and vendotaenids occur in the Khatyspyt Formation; small shelly fossils, more complex trace fossils, and acritarchs all appear near the base of the Kessyusa Formation and diversify upward. The carbon-isotopic composition of carbonates varies stratigraphically in a pattern comparable to that determined for other terminal Proterozoic and basal Cambrian successions. In concert, litho-, bio-, and chemostratigraphic data indicate the importance of the Khorbusuonka Group in the global correlation of terminal Proterozoic sedimentary rocks. Stratigraphic data and a recently determined radiometric date on basal Kessyusa volcanic breccias further underscore the significance of the Olenek region in investigations of the Proterozoic-cambrian boundary.

Sedimentology of the Simmler and Vaqueros formations in the Caliente Range-Carrizo Plain area, California

USGS Publications Warehouse

Bartow, J. Alan

1974-01-01

The Simmler and Vaqueros Formations in the Caliente Range-Carrizo Plain area make up a large part of the thick Tertiary sedimentary sequence that was .deposited in a basin which lay along the southwest side of the present-day San Andreas fault. The evolution of this basin during Oligocene and early Miocene time and the relationship of its sedimentary record to the tectonic history is an important chapter in the Tertiary history of California. The Simmler Formation, of provincial Oligocene to early Miocene age, unconformably overlies basement rocks and an Upper Cretaceous-lower Tertiary marine sequence. It consists of a sandstone facies, which is mostly a variegated sequence of sandstone and mudstone occurring in fining-upward cycles, and a conglomerate facies, which occurs around the southwest and southeast margins of the basin. The conformably overlying Vaqueros Formation, of provincial early to middle Miocene age, is subdivided from base upward ,into the Quail Canyon Sandstone, Soda Lake Shale, and Painted Rock Sandstone Members. The Vaqueros intertongues eastward, southeastward, and northward with the continental Caliente Formation and is conformably overlain by the Monterey Shale. In the Caliente Range, northeast of major thrust faults, the Vaqueros may reach a thickness of 8,700 feet (2,650 m). Around the margin of the basin, the formation is much thinner--locally only 200 feet (60 m) thick--and is generally undivided. The Quail Canyon Sandstone Member is composed of cross-bedded or planar-stratified sandstone. The Soda Lake Shale Member consists mostly of siltstone and platy shale with a few thin sandstone interbeds. The Painted Rock Sandstone Member, the thickest and coarsest member, consists mostly of large lenticular bodies of thick-bedded coarse-grained sandstone and thinner units of siltstone. Petrology and paleocurrent studies indicate that, in a given subarea, the Simmler and Vaqueros Formations were derived from the same source terrane and that the sediments were usually transported in the same general direction. Crystalline basement terranes to the north and south were the primary sources, but the Upper Cretaceous-lower Tertiary marine sequence made substantial contributions along the southwest side of the basin. The sandstone facies of the Simmler Formation is interpreted as an alluvial plain depositional complex formed by through-flowing low-sinuosity streams, and the conglomerate facies is interpreted as alluvial fan deposits. The Vaqueros Formation in the Caliente Range forms a transgressive-regressive sequence. The Quail Canyon Sandstone and lowermost Soda Lake Shale Members represent the transgressive phase, are interpreted as beach-nearshore and offshore deposits, and are locally the marine equivalents of the upper part of the Simmler conglomerate facies. The remainder of the Soda Lake Shale Member and the Painted Rock Sandstone Member represent the regressive phase and are interpreted as a complex of deltaic and shelf-slope deposits that prograded over basinal shales and turbidites. The reconstructed basin history began in the Oligocene with alluvial plain sedimentation in an area of relatively low relief. This was interrupted in the early Miocene (ca. 25 m.y. B.P.) by the beginning of a period of crustal extension, probably related to the first interaction of the Pacific and North American plates, resulting in the formation of a rapidly subsiding marine basin. This crustal extension was followed by a period of north-south compression in the Pliocene and Pleistocene, which caused the thick accumulation of sediments in the basin to be folded and thrust over the thinner basin-margin section. The Red Hills-Chimineas-Russell fault trend, along which Cretaceous granitic and Precambrian(?) gneissic rocks had been juxtaposed in Cretaceous time, was reactivated in the Pliocene, when 8 to 9 miles (13-14.5 km) of additional right-lateral slip occurred, The pattern of north-south thrusting and rig

Identification of Changes along a Continuum of Speech Intonation is Impaired in Congenital Amusia.

PubMed

Hutchins, Sean; Gosselin, Nathalie; Peretz, Isabelle

2010-01-01

A small number of individuals have severe musical problems that have neuro-genetic underpinnings. This musical disorder is termed "congenital amusia," an umbrella term for lifelong musical disabilities that cannot be attributed to deafness, lack of exposure, or brain damage after birth. Amusics seem to lack the ability to detect fine pitch differences in tone sequences. However, differences between statements and questions, which vary in final pitch, are well perceived by most congenital amusic individuals. We hypothesized that the origin of this apparent domain-specificity of the disorder lies in the range of pitch variations, which are very coarse in speech as compared to music. Here, we tested this hypothesis by using a continuum of gradually increasing final pitch in both speech and tone sequences. To this aim, nine amusic cases and nine matched controls were presented with statements and questions that varied on a pitch continuum from falling to rising in 11 steps. The sentences were either naturally spoken or were tone sequence versions of these. The task was to categorize the sentences as statements or questions and the tone sequences as falling or rising. In each case, the observation of an S-shaped identification function indicates that amusics can accurately identify unambiguous examples of statements and questions but have problems with fine variations between these endpoints. Thus, the results indicate that a deficient pitch perception might compromise music, not because it is specialized for that domain but because music requirements are more fine-grained.

Three dimensional unstructured multigrid for the Euler equations

NASA Technical Reports Server (NTRS)

Mavriplis, D. J.

1991-01-01

The three dimensional Euler equations are solved on unstructured tetrahedral meshes using a multigrid strategy. The driving algorithm consists of an explicit vertex-based finite element scheme, which employs an edge-based data structure to assemble the residuals. The multigrid approach employs a sequence of independently generated coarse and fine meshes to accelerate the convergence to steady-state of the fine grid solution. Variables, residuals and corrections are passed back and forth between the various grids of the sequence using linear interpolation. The addresses and weights for interpolation are determined in a preprocessing stage using linear interpolation. The addresses and weights for interpolation are determined in a preprocessing stage using an efficient graph traversal algorithm. The preprocessing operation is shown to require a negligible fraction of the CPU time required by the overall solution procedure, while gains in overall solution efficiencies greater than an order of magnitude are demonstrated on meshes containing up to 350,000 vertices. Solutions using globally regenerated fine meshes as well as adaptively refined meshes are given.

A unified engineering model of the first stroke in downward negative lightning

NASA Astrophysics Data System (ADS)

Nag, Amitabh; Rakov, Vladimir A.

2016-03-01

Each stroke in a negative cloud-to-ground lightning flash is composed of downward leader and upward return stroke processes, which are usually modeled individually. The first stroke leader is stepped and starts with preliminary breakdown (PB) which is often viewed as a separate process. We present the first unified engineering model for computing the electric field produced by a sequence of PB, stepped leader, and return stroke processes, serving to transport negative charge to ground. We assume that a negatively charged channel extends downward in a stepped fashion during both the PB and leader stages. Each step involves a current wave that propagates upward along the newly formed channel section. Once the leader attaches to ground, an upward propagating return stroke neutralizes the charge deposited along the channel. Model-predicted electric fields are in reasonably good agreement with simultaneous measurements at both near (hundreds of meters, electrostatic field component is dominant) and far (tens of kilometers, radiation field component is dominant) distances from the lightning channel. Relations between the features of computed electric field waveforms and model input parameters are examined. It appears that peak currents associated with PB pulses are similar to return stroke peak currents, and the observed variation of electric radiation field peaks produced by leader steps at different heights above ground is influenced by the ground corona space charge.

DOE Office of Scientific and Technical Information (OSTI.GOV)

Doebrich, J.L.; Murchey, B.L.; Theodore, T.G.

Recently completed 1:24,000-scale geologic mapping and biostratigraphic studies of the Mississippian, Pennsylvanian, and Permian Havallah sequence in the Valmy, North Peak, and Antler Peak quadrangles of the Battle Mountain area have documented a significant amount of imbricate thrusting in the Golconda allochthon (GA) and defined depositional environments that existed in the Havallah basin. Furthermore, the Willow Creek thrust (WCT) is identified as a major N-striking W-dipping structure, fairly continuous through the quadrangles, that tectonically subdivides the allochthon into two lithotectonic units. Pennsylvanian and Permian slope deposits comprise lithotectonic unit 1 (LT1), the footwall of the WCT. LT1 consists of amore » coarsening upward sequence of sponge-spicule chert and argillite, and cherty shale, which are tectonically cut out near Trenton Canyon such that the WCT becomes the sole of the GA. Mississippian basin deposits and Pennsylvanian and Permian turbidites comprise lithotectonic unit 2 (LT2), the hanging wall of the WCT. LT2 consists of a coarsening and shallowing upward sequence of Mississippian radiolarian chert and shale, overlain by Pennsylvanian and Permian calcareous siltstone and sandstone, pebble conglomerate, and pebbly to micritic limestone. Oncolitic coatings on fossil fragments in some calcareous sands high in the stacking pattern suggest environments as shallow as 20 m. Most modes of quartz- and calcite-framework dominant sands plot in quartzose recycled orogen fields; however, compositional facies with abundant chert fragments are rare in contrast with quartz-chert petrofacies sands reported for the GA in the Mount Tobin area. Extrabasinal carbonate grains at framework sites may have been derived from elevated fault blocks or platforms west of the Antler highlands. These studies confirm that turbiditic rocks in the GA show ample evidence in their provenance for having attachments to a nearby continental margin.« less

Fine Mapping and Evolution of a QTL Region on Cattle Chromosome 3

ERIC Educational Resources Information Center

Donthu, Ravikiran

2009-01-01

The goal of my dissertation was to fine map the milk yield and composition quantitative trait loci (QTL) mapped to cattle chromosome 3 (BTA3) by Heyen et al. (1999) and to identify candidate genes affecting these traits. To accomplish this, the region between "BL41" and "TGLA263" was mapped to the cattle genome sequence assembly Btau 3.1 and a…

Late pleistocene aggradation and degradation of the lower colorado river: Perspectives from the Cottonwood area and other reconnaissance below Boulder Canyon

USGS Publications Warehouse

Lundstrom, S.C.; Mahan, S.A.; Paces, J.B.; Hudson, M.R.; House, P.K.; Malmon, D.V.; Blair, J.L.; Howard, K.A.

2008-01-01

Where the lower Colorado River traverses the Basin and Range Province below the Grand Canyon, significant late Pleistocene aggradation and subsequent degrada tion of the river are indicated by luminescence, paleomagnetic, and U-series data and stratigraphy. Aggradational, finely bedded reddish mud, clay, and silt are underlain and overlain by cross-bedded to plane-bedded fine sand and silt. That sequence is commonly disconformably overlain by up to 15 m of coarse sand, rounded exotic gravel, and angular, locally derived gravel. Luminescence dates on the fine sediments range from ca. 40 ka to 70 ka, considering collective uncertainties. A section of fine grained sediments over a vertical range of 15 m shows normal polarity magnetization and little apparent secular variation beyond dispersion that can be explained by com paction. Aggradation on large local tributaries such as Las Vegas Wash appears to have been coeval with that of the Colorado River. The upper limits of erosional rem nants of the sequence define a steeper grade above the historical river, and these late Pleistocene deposits are greater than 100 m above the modern river north of 35??N. Ter race gravels inset below the upper limit of the aggradational sequence yield 230Th dates that range from ca. 32 ka to 60 ka and indicate that degradation of the river system in this area closely followed aggradation. The thick sequence of rhythmically bedded mud and silt possibly indicates set tings that were ponded laterally between valley slopes and levees of the aggrading river. Potential driving mechanisms for such aggradation and degradation include sediment-yield response to climate change, drought, fire, vegetation-ecosystem dynam ics, glaciation, paleofloods, groundwater discharge, and building and destruction of natural dams produced by volcanism and landslides. ?? 2008 The Geological Society of America.

Swine transcriptome characterization by combined Iso-Seq and RNA-seq for annotating the emerging long read-based reference genome

USDA-ARS?s Scientific Manuscript database

PacBio long-read sequencing technology is increasingly popular in genome sequence assembly and transcriptome cataloguing. Recently, a new-generation pig reference genome was assembled based on long reads from this technology. To finely annotate this genome assembly, transcriptomes of nine tissues fr...

Depositional History and Sequence Stratigraphy of the Middle Ordovician Yeongheung Formation (Yeongweol Group), Taebaeksan Basin, mid-east Korea

NASA Astrophysics Data System (ADS)

Kwon, Yoo Jin; Kwon, Yi Kyun

2017-04-01

The Middle Ordovician Yeongheung Formation consists of numerous meter-scale, shallowing-upward cycles which were deposited on a shallow-marine carbonate platform. Many diagnostic sedimentary textures and structures such as supratidal laminite, tepee structure, and solution-collapsed breccia are observed, which enable to infer the dry climate and high salinity conditions during deposition of the formation. In order to understand its depositional history, this study focuses on vertical and spatial stacking patterns of the second- to third-order sequences through the detailed outcrop description and geologic mapping. A total 19 lithofacies have been recognized, which can be grouped into 5 facies associations (FAs): FA1 (Supratidal flat), FA2 (Supratidal or dolomitization of peritidal facies), FA3 (Intertidal flat), FA4 (Shallow subtidal to peritidal platform), FA5 (Shallow subtidal shoal). Global mega-sequence boundary (Sauk-Tippecanoe) occurs in solution-collapsed breccia zone in the lower part of the formation. Correlation of the shallowing-upward cycle stacking pattern across the study area defines 6 transgressive-regressive depositional sequences. Each depositional sequences comprises a package of vertical and spatial staking of shallow subtidal cycles in the lower part and peritidal cycles in the upper part of the formation. According to sequence stratigraphic interpretation, the reconstructed relative sea-level curve of the Yeongweol platform is very similar to that of the Taebaek platform. Based on the absence of siliciclastic sequence such as the Jigunsan Formation and the lithologic & stratigraphic differences, however, the Yeongweol and Taebaek groups might not belong to a single depositional system within the North China platform. The Yeongweol Group can be divided by the four subunits into their unique lithologic successions and geographic distributions. The Eastern subunit of the Yeongweol Group is composed dominantly of carbonate rocks with a high composition ratio of siliciclastic materials dominated facies in the upper part of the Yeongheung Formation. The Middle1 subunit is pervasively recognized by subaerial exposures facies (carbonate breccia, paleosol), whereas the Middle2 subunit is similar to the Middle1 subunit except for the absence of subaerial exposure features. The Western subunit lost some of its primary sedimentary structure and texture in comparison to other subunits, because of the active recrystallization, metamorphism, structural deformation and carbonate diagenesis. This study reveals depositional history and refines sequence stratigraphy of the Yeongheung Formation, promoting understanding of the basin evolution of the Yeongweol Group.

Paleocene Wilcox cross-shelf channel-belt history and shelf-margin growth: Key to Gulf of Mexico sediment delivery

NASA Astrophysics Data System (ADS)

Zhang, Jinyu; Steel, Ronald; Ambrose, William

2017-12-01

Shelf margins prograde and aggrade by the incremental addition of deltaic sediments supplied from river channel belts and by stored shoreline sediment. This paper documents the shelf-edge trajectory and coeval channel belts for a segment of Paleocene Lower Wilcox Group in the northern Gulf of Mexico based on 400 wireline logs and 300 m of whole cores. By quantitatively analyzing these data and comparing them with global databases, we demonstrate how varying sediment supply impacted the Wilcox shelf-margin growth and deep-water sediment dispersal under greenhouse eustatic conditions. The coastal plain to marine topset and uppermost continental slope succession of the Lower Wilcox shelf-margin sediment prism is divided into eighteen high-frequency ( 300 ky duration) stratigraphic sequences, and further grouped into 5 sequence sets (labeled as A-E from bottom to top). Sequence Set A is dominantly muddy slope deposits. The shelf edge of Sequence Sets B and C prograded rapidly (> 10 km/Ma) and aggraded modestly (< 80 m/Ma). The coeval channel belts are relatively large (individually averaging 11-13 m thick) and amalgamated. The water discharge of Sequence Sets B and C rivers, estimated by channel-belt thickness, bedform type, and grain size, is 7000-29,000 m3/s, considered as large rivers when compared with modern river databases. In contrast, slow progradation (< 10 km/Ma) and rapid aggradation (> 80 m/Ma) characterizes Sequence Sets D and E, which is associated with smaller (9-10 m thick on average) and isolated channel belts. This stratigraphic trend is likely due to an upward decreasing sediment supply indicated by the shelf-edge progradation rate and channel size, as well as an upward increasing shelf accommodation indicated by the shelf-edge aggradation rate. The rapid shelf-edge progradation and large rivers in Sequence Sets B and C confirm earlier suggestions that it was the early phase of Lower Wilcox dispersal that brought the largest deep-water sediment volumes into the Gulf of Mexico. Key factors in this Lower Wilcox stratigraphic trend are likely to have been a very high initial sediment flux to the Gulf because of the high initial release of sediment from Laramide catchments to the north and northwest, possibly aided by modest eustatic sea-level fall on the Texas shelf, which is suggested by the early, flat shelf-edge trajectory, high amalgamation of channel belts, and the low overall aggradation rate of the Sequence Sets B and C.

Stratigraphy and depositional environment of upper Cambrian Red Lion Formation, southwestern Montana

DOE Office of Scientific and Technical Information (OSTI.GOV)

Hayden, L.L.; Bush, J.H.

1987-08-01

The Red Lion Formation was examined along a northwest-southeast transect from Missoula to Bozeman, Montana. Lateral equivalents are the Snowy Range Formation east of Bozeman and the upper Fishtrap Dolomite in northwest Montana. The basal Dry Creek Member (0-5 m) consists of shale interbedded with quartz siltstones and sandstones. The overlying Sage Member, up to 115 meters in thickness, is characterized by ribbon carbonate beds containing lime mudstone and quartzose calcisiltite couplets arranged in fining-upward sequences 1-5 cm thick. Couplets are interlayered in places with thin (1-5 cm) to medium bedded (6-70 cm) units of laminated and non-laminated calcareous siltstones,more » flat-pebble conglomerates, trilobite packstones, cryptalgal boundstones, bioturbated lime mudstones and shales. In places, the upper Sage contains columnar and domal algal features. The Red Lion Formation is considered to be one Grand Cycle with the Dry Creek representing a lower inner detrital half-cycle and the Sage an upper carbonate half-cycle. The Dry Creek formed as the result of a westward clastic pulse from the inner detrital belt across an intrashelf basin onto outer middle carbonate peritidal complexes of the underlying Pilgrim Formation. Lower Sage ribbon rocks were deposited in storm-crossed, below wave-base areas. During deposition of the upper Sage, shallowing formed discontinuous algal-peritidal complexes over much of western and central Montana. These complexes were less extensive than earlier Cambrian buildups owing to slower rates of basin subsidence and clastic input suppressing carbonate production.« less

Sedimentology and uranium potential of the Inyan Kara Group, near Buffalo Gap, South Dakota. Final report

DOE Office of Scientific and Technical Information (OSTI.GOV)

Dandavati, K.S.; Fox, J.E.

1980-04-01

Sedimentary structures, along with textural and compositional evidence gathered from two stratigraphic sections of the Lower Cretaceous Inyan Kara Group in Calico and Fuson Canyons on the southeastern flank of the Black Hills, suggest the following depositional framework: the basal, Chilson Member of the Lakota Formation consists of a series of upward fining sequences deposited in point-bar and flood-plain environments of a northeasterly flowing, meandering river system. Fluvial sandstones in the Chilson include channel-fill, channel margin, crevasse microdelta and levee facies. The Minnewaste Limestone Member and the lower part of the overlying Fuson Member of the Lakota Formation were depositedmore » in low-energy, lacustrine environments. Flood oriented tidal-delta facies overlain by tidal flat deposits in the upper part of the Fuson Member suggest an earlier incursion of the initial Cretaceous seaway, at least locally, than previously documented in the region. Lower Fall River deposits represent northeast-trending barrier bar and northwest-trending deltaic distributary mouth bar facies, reflecting an increase in sediment supply. Upper Fall River sandstones include distributary mouth bar and lower foreshore deposits. Altered sandstones of the basal Chilson Member and the lower part of the Fuson Member in Calico Canyon contain anomalous values of U/sub 3/O/sub 8/. Fossil wood and bone samples are also enriched in trace elements of U, V, and Mo, suggesting that uranium-bearing solutions might have passed through porous and permeable sandstones of the study area, possibly flowing toward the northeast along Chilson paleochannels.« less

Pliocene Deep Water Channel System of Celebes Molasse as New Exploration Play In Banggai Sula Foreland Basin, Eastern Sulawesi-Indonesia

NASA Astrophysics Data System (ADS)

Prima Kurniawan, Anggoro; Purnomo Adi, Galang; Sundari, Wahyuni Tri; Arifin, Maikel; Jaya Panguriseng, Muharram; Hartanto, Sri; Herawati, Neni

2018-03-01

Banggai-Sula foreland basin in Matindok block is the product of Late Miocene to Early Pliocene collision between Banggai-Sula microcontinent and East Sulawesi Ophiolite (ESO)-magmatic arc of Sundaland. Proven petroleum system plays for Donggi, Senoro, and Matindok gas fields are Miocene build-up carbonate and platform carbonates related to wrench structures, sealed by Plio-Pleistocene Celebes Molasse consists of conglomerate, conglomeratic sandstone, shale and charged during early Pliocene related to collisional tectonic from Miocene marine clastic source rocks. Latest interpretation of 3D & 2D seismic datasets on onshore area of Matindok block shown that there is possibility of NE to SW trending channel systems existed in Plio-Pleistocene Celebes Molasse as post collision sediments. Based on biostratigraphy interpretation, Celebes Molasse interval was deposited in marine environment, generally outer sublittoral to upper bathyal. Channel filled pattern on seismic data expression shown onlap, divergent and mounded-onlap fills on 6 (six) interpreted channel bodies. Fining upward sequences is well recognized based on gamma ray log from several wells that penetrated those interpreted channel. The thicknesses of channel bodies vary from 50 m to 150 m with sand to shale ratio up to 40 % and gas composition reading from C1 to C3. Despite of there is no well testing data on these channels interval; we believed that this Pliocene deep water channel can become the new exploration play although several studies about seal effectiveness of channel bodies as stratigraphic traps, lateral and vertical migration pathways need to be carried out.

Evidence for coherent spicule oscillations from correcting Hinode/SOT Ca II H in the south-east limb of the Sun

NASA Astrophysics Data System (ADS)

Ahangarzadeh Maralani, A. R.; Tavabi, E.; Ajabshirizadeh, A.

2017-05-01

Wave theories of heating of the chromosphere, corona and solar wind due to photospheric fluctuations are strengthened by the existence of the wave coherency observed up to the transition region. The coherency of intensity oscillations of solar spicules was explored using the Solar Optical Telescope (SOT) on the Hinode spacecraft with increasing height above the solar limb in the active region. We used time sequences near the south-east region from the Hinode/SOT for the Ca II H line obtained on 2015 April 3 and applied the de-convolution procedure to the spicule to illustrate how effectively our restoration method works on fine structures such as spicules. Moreover, the intensity oscillations at different heights above the solar limb were analysed through wavelet transforms. Afterwards, the phase difference was measured between oscillations at two heights in search of evidence for coherent oscillations. The results of the wavelet transformations revealed dominant period peaks for 2, 4, 5.5 and 6.5 min at four separate heights. The dominant frequencies for a coherency level higher than 75 per cent were found to be around 5.5 and 8.5 mHz. Mean phase speeds of 155-360 km s-1 were measured. We found that the mean phase speeds increased with height. The results suggest that the energy flux carried by coherent waves into the corona and heliosphere may be several times larger than previous estimates that were based solely on constant velocities. We provide compelling evidence for the existence of upwardly propagating coherent waves.

Modulations of RNA sequences by cytokinin in pumpkin cotyledons

DOE Office of Scientific and Technical Information (OSTI.GOV)

Chang, C.; Ertl, J.; Chen, C.

1987-04-01

Polyadenylated mRNAs from excised pumpkin cotyledons treated with or without 10/sup -4/ M benzyladenine (BA) for various time periods in suspension culture were assayed by in vitro translation in the presence of (/sup 35/S) methionine. The radioactive polypeptides were analyzed by one- and two-dimensional polyacrylamide gel electrophoresis. Specific sequences of mRNAs were enhanced, reduced, induced, or suppressed by the hormone within 60 min of the application of BA to the cotyledons. Four independent cDNA clones of cytokinin-modulated mRNAs have been selected and characterized. RNA blot hybridization using the four cDNA probes also indicates that the levels of specific mRNAs aremore » modulated upward or downward by the hormone.« less

Ichnofabrics and Facies in the Paleocene of Chicxulub: A Record of the Recovery of Life Post-Impact

NASA Astrophysics Data System (ADS)

Whalen, M. T.; O'Malley, K.; Lowery, C. M.; Rodriguez-Tovar, F. J.; Gulick, S. P. S.; Morgan, J. V.

2017-12-01

IODP/ICDP Expedition 364 recovered 829 m of core at Site M0077 including 110 m of post-impact, (hemi)pelagic Paleogene sedimentary rocks overlying the Chicxulub impact crater peak ring formed from suevite, melt rock, and granitic basement. The transition between suevite and Paleocene limestone (Unit 1F) is a remarkable fining upward package of gravel to sand-sized suevite (Unit 2A) overlain by the laminated carbonate-rich Unit 1G that records deposition of fine-grained material post-impact and contains a mix of Late Cretaceous and earliest Danian taxa. This study concentrates on the overlying Unit 1F. The ichnofabric index (ii, 1-6 indicating no bioturbation to complete homogenization), provides a semiquantitative estimate of burrow density to help assess the return of life to the crater. Unit 1F is 10 m thick with a sharp contact at the base of a green claystone (ii 2) that overlies Unit 1G. It consists of cm-dm interbedded blue-gray marlstone (ii 2) grading upward into gray to blue-gray wacke/packstone (ii 3-5). Contacts between facies are mostly gradational due to burrowing. The upper 3 m of the unit is a yellow-brown burrowed packstone (ii 4) intercalated with gray marlstone (ii 2). The uppermost 7.5 cm is calcite cemented with 1 cm wide burrows (ii 3-4) and fine to coarse sand size clasts including foraminifera. The upper surface of the unit is a hardground with an 2 Myr unconformity overlain by Eocene rocks. The first well-defined burrows occur in the upper 30 cm of Unit 1G. Unequivocal burrows (ii 2) that disturb sedimentary facies occur in overlying Unit 1F with values of 3-5 recorded in the overlying 10 cm indicating significant disruption of primary sedimentary structures. The iis in Unit 1F vary between 2 and 5 with rare laminated intervals without bioturbation (ii 1). Values of ii correlate well with facies changes, i.e. marlstones display lower iis than more carbonate-rich facies, implying a depth and/or redox control on burrower distribution. The ii data indicate that burrowers were re-established in the crater before the end of deposition of Unit 1G. The lowest Danian zone Pα is documented in the lowermost part of Unit 1F. Trace makers were thus active by the earliest Danian with an increase in abundance and diversity during the lower Danian, indicating a rapid and continuous return of benthic life to the crater.

Ash turbidites from Southern Italy help understanding the parent eruptions and contributing to geodynamic evolution cadre of the Tyrrhenian sea

NASA Astrophysics Data System (ADS)

Doronzo, Domenico Maria

2010-05-01

Tephra layers intercalated in sedimentary successions are very interesting since they represent some instants of geodynamic evolution in a sedimentation basin. Furthermore, they can constitute deposits of explosive eruptions whose distal behaviour can be useful for studying the volcanoes activity, especially when pyroclastic deposits in proximal areas are absent. In the Craco area (Matera, Italy), thick ash turbidites intercalated in marine clays deposits have been recently recognized, which interest is related to the considerable cropping out thickness (1 to 5 m), freshness of the material and absence of sedimentary component. Petrography, sedimentology and chemistry of the deposits have been characterized with the aim of defining genesis and deposition of the material. The deposits are essentially made up of ashy pyroclasts, dominated by fresh acidic to intermediate glass, mostly in the form of shards, pumice fragments and groundmass fragments with vitrophyric texture. Rare crystals include Pl, Opx, Cpx, Hbl and Bt. 40Ar/39Ar geochronology on the amphibole dated one level to 2.24 ± 0.06 Ma, indicating the Late Pliocene. The grain size (fine ash) and textural features of the deposits are typical of pyroclastic fall deposits related to explosive eruptions with consequent upward projection of the fragmented material through Plinian columms. The columns turned eastward because of stratospheric winds and the material fell in a marine environment. It deposited on the slope of Pliocene basins in the frontal sector of the Southern Apennine chain. Structural features are the following: fining-upward gradation of the deposits with cross- and convolute laminations at the base and fine-grained massive beds at the top. They suggest that the primary pyroclastic fall deposits were mobilized as volcaniclastic turbidity currents towards a deeper environment. Glass and crystal compositions were investigated by SEM/EDS analysis. Petrographycal and chemical compositions of the volcaniclastic material is typical of a transitional high-K calc-alkaline series (basaltic andesite to rhyolite for the ash). The age and chemical composition constrain the provenance of the volcaniclastic Craco levels from the Southern Tyrrhenian domain, where a volcanic arc was probably active during the Pliocene. The hypothetical eruptive centres have been located at the northern termination of the arc, exactly in the Pontine islands area. Other neighbouring volcanic centres have been located on land in the Volturno plain. The integrated approach used in this work can be applied in the future to other tephra layers of Neogene successions for contributing to geodynamic evolution cadre of the Tyrrhenian sea.

Multigrid Methods

NASA Technical Reports Server (NTRS)

1981-01-01

Developments in numerical solution of certain types of partial differential equations by rapidly converging sequences of operations on supporting grids that range from very fine to very coarse are presented.

34 CFR 645.12 - What services may regular Upward Bound and Upward Bound Math-Science projects provide?

Code of Federal Regulations, 2014 CFR

2014-07-01

... 34 Education 3 2014-07-01 2014-07-01 false What services may regular Upward Bound and Upward Bound Math-Science projects provide? 645.12 Section 645.12 Education Regulations of the Offices of the... services may regular Upward Bound and Upward Bound Math-Science projects provide? Any project assisted...

34 CFR 645.12 - What services may regular Upward Bound and Upward Bound Math-Science projects provide?

Code of Federal Regulations, 2011 CFR

2011-07-01

... 34 Education 3 2011-07-01 2011-07-01 false What services may regular Upward Bound and Upward Bound Math-Science projects provide? 645.12 Section 645.12 Education Regulations of the Offices of the... services may regular Upward Bound and Upward Bound Math-Science projects provide? Any project assisted...

34 CFR 645.12 - What services may regular Upward Bound and Upward Bound Math-Science projects provide?

Code of Federal Regulations, 2013 CFR

2013-07-01

... 34 Education 3 2013-07-01 2013-07-01 false What services may regular Upward Bound and Upward Bound Math-Science projects provide? 645.12 Section 645.12 Education Regulations of the Offices of the... services may regular Upward Bound and Upward Bound Math-Science projects provide? Any project assisted...

34 CFR 645.12 - What services may regular Upward Bound and Upward Bound Math-Science projects provide?

Code of Federal Regulations, 2012 CFR

2012-07-01

... 34 Education 3 2012-07-01 2012-07-01 false What services may regular Upward Bound and Upward Bound Math-Science projects provide? 645.12 Section 645.12 Education Regulations of the Offices of the... services may regular Upward Bound and Upward Bound Math-Science projects provide? Any project assisted...

Consequences of kriging and land use regression for PM2.5 predictions in epidemiologic analyses: Insights into spatial variability using high-resolution satellite data

PubMed Central

Alexeeff, Stacey E.; Schwartz, Joel; Kloog, Itai; Chudnovsky, Alexandra; Koutrakis, Petros; Coull, Brent A.

2016-01-01

Many epidemiological studies use predicted air pollution exposures as surrogates for true air pollution levels. These predicted exposures contain exposure measurement error, yet simulation studies have typically found negligible bias in resulting health effect estimates. However, previous studies typically assumed a statistical spatial model for air pollution exposure, which may be oversimplified. We address this shortcoming by assuming a realistic, complex exposure surface derived from fine-scale (1km x 1km) remote-sensing satellite data. Using simulation, we evaluate the accuracy of epidemiological health effect estimates in linear and logistic regression when using spatial air pollution predictions from kriging and land use regression models. We examined chronic (long-term) and acute (short-term) exposure to air pollution. Results varied substantially across different scenarios. Exposure models with low out-of-sample R2 yielded severe biases in the health effect estimates of some models, ranging from 60% upward bias to 70% downward bias. One land use regression exposure model with greater than 0.9 out-of-sample R2 yielded upward biases up to 13% for acute health effect estimates. Almost all models drastically underestimated the standard errors. Land use regression models performed better in chronic effects simulations. These results can help researchers when interpreting health effect estimates in these types of studies. PMID:24896768

Facies architecture and sequence-stratigraphic features of the Tumbiana Formation: A depositional setting of late Archaean stromatolites in the Pilbara Craton, northwestern Australia

NASA Astrophysics Data System (ADS)

Sakurai, R.; Ueno, Y.; Kitajima, K.; Ito, M.; Maruyama, S.

2001-12-01

The Tumbiana Formation (ca. 2700 Ma) is a succession developed in response to late Archaean crustal extension in the Pilbara Craton, northwestern Australia. The formation is characterized by intercalations of stromatolite carbonates and provides a perspective of evolution of photosynthetic organisms that are interpreted to have been responsible for oxygenation of atmosphere. Here we investigated a depositional setting of the stromatolite limestone for better understanding of an environment that may have controlled early development of oxygenic photosynthesis. We studied lithofacies and sequence-stratigraphic features of the Tumbiana Formation in the Redmont area based upon three-dimensional analyses of onshore outcrops. The Tumbiana Formation, as much as 170 m thick, unconformably overlies the early Archaean basement rocks and is unconformably overlain by the Maddina Formation that consists of mafic tuffaceous sediments and basalt. The lower part of the Tumbiana Formation is characterized by planar- and trough-cross stratified conglomerates that are interpreted to be an alluvial-fan deposit shed from the northern hinterlands and developed mainly in local depressions of the basement rocks during an early transgressive stage. The base of the middle part is defined by a transgressive erosional surface overlain by conglomerates and/or breccia that pass upward to mafic tuffaceous mudstones and sandstones intercalated with accretionary lapilli, breccia, and basalt. Mudstones are commonly laminated and sandstones contain current- and wave ripple-lamination, parallel lamination, hummocky cross-stratification, and trough cross-stratification. In general, the middle part exhibits an overall fining- and coarsening-upward pattern and is interpreted to indicate transgressive and regressive shelf-to-coastal lithofacies successions. In particular, the uppermost horizon of the middle part is characterized by sandstone beds with herringbone structures and desiccation cracks and is interpreted to indicate an intertidal environment developed during a late highstand stage. The middle part, in general, thickens to the northern proximal area and eventually flattens out topographic irregularity of the basement rocks. The upper part is characterized by stromatolite carbonates, associated with minor wave- and current-rippled sandstones and desiccation cracks, and does not exhibit distinct lateral variation in thickness. The base of the upper part is also characterized by a transgressive lag deposit and the ensuing transgression over intertidal deposits of the middle part is interpreted to have developed an accommodation space for the vertical stacking of stromatolites with different external shapes from columnar and small domal types to a large domal type that may have responded to the increase in paleowater depth possibly from intertidal to subtidal environments. In conclusion, stromatolites in the upper Tumbiana Formation in the Redmont area are interpreted to have developed in coastal and shallow marine environments in response to a rise in relative sea level rather than in ephemeral saline lakes as proposed by previous studies from different locations.

Depositional environments and processes in Upper Cretaceous nonmarine and marine sediments, Ocean Point dinosaur locality, North Slope, Alaska

USGS Publications Warehouse

Phillips, R.L.

2003-01-01

A 178-m-thick stratigraphic section exposed along the lower Colville River in northern Alaska, near Ocean Point, represents the uppermost part of a 1500 m Upper Cretaceous stratigraphic section. Strata exposed at Ocean Point are assigned to the Prince Creek and Schrader Bluff formations. Three major depositional environments are identified consisting, in ascending order, of floodplain, interdistributary-bay, and shallow-marine shelf. Nonmarine strata, comprising the lower 140 m of this section, consist of fluvial distributaries, overbank sediments, tephra beds, organic-rich beds, and vertebrate remains. Tephras yield isotopic ages between 68 and 72.9 Ma, generally consistent with paleontologic ages of late Campanian-Maastrichtian determined from dinosaur remains, pollen, foraminifers, and ostracodes. Meandering low-energy rivers on a low-gradient, low-relief floodplain carried a suspended-sediment load. The rivers formed multistoried channel deposits (channels to 10 m deep) as well as solitary channel deposits (channels 2-5 m deep). Extensive overbank deposits resulting from episodic flooding formed fining-upward strata on the floodplain. The fining-upward strata are interbedded with tephra and beds of organic-rich sediment. Vertical-accretion deposits containing abundant roots indicate a sheet flood origin for many beds. Vertebrate and nonmarine invertebrate fossils along with plant debris were locally concentrated in the floodplain sediment. Deciduous conifers as well as abundant wetland plants, such as ferns, horsetails, and mosses, covered the coastal plain. Dinosaur skeletal remains have been found concentrated in floodplain sediments in organic-rich bone beds and as isolated bones in fluvial channel deposits in at least nine separate horizons within a 100-m-thick interval. Arenaceous foraminifers in some organic-rich beds and shallow fluvial distributaries indicate a lower coastal plain environment with marginal marine (bay) influence. Marginal marine strata representing interdistributary bay deposits overlie the nonmarine beds and comprise about 15 m of section. Extensive vegetated sand flats, shoals, and shallow channels overlain by shallow bay deposits (less than 7 m deep), containing storm-generated strata characterize the marginal marine beds. Abundant bioturbation and roots characterize the stratigraphic lowest bay deposits; bioturbated sediment, pelecypods, barnacles, and benthic microfossils are found in the overlying bay storm deposits. The sediments abruptly change upward from hummocky cross-stratified bay deposits to a muddy marsh deposit containing shallow organic-rich channels to prograding nonmarine to marginal marine beds. Transgressive, abundantly fossiliferous shallow-marine strata more than 13 m thick comprise the uppermost exposures at Ocean Point. The marine beds overlie nonmarine and bay strata and represent an environment dominated episodically by storms. The age of the marginal marine and marine beds is late Maastrichtian based on pollen. ?? 2003 Elsevier Ltd. All rights reserved.

Analysis of DNA Sequences by an Optical Time-Integrating Correlator: Proof-of-Concept Experiments.

DTIC Science & Technology

1992-05-01

DNA ANALYSIS STRATEGY 4 2.1 Representation of DNA Bases 4 2.2 DNA Analysis Strategy 6 3.0 CUSTOM GENERATORS FOR DNA SEQUENCES 10 3.1 Hardware Design 10...of the DNA bases where each base is represented by a 7-bits long pseudorandom sequence. 5 Figure 4: Coarse analysis of a DNA sequence. 7 Figure 5: Fine...a 20-bases long database. 32 xiii LIST OF TABLES PAGE Table 1: Short representations of the DNA bases where each base is represented by 7-bits long

Lightning Attachment to Wind Turbines in Central Kansas: Video Observations, Correlation with the NLDN and in-situ Peak Current Measurements

NASA Astrophysics Data System (ADS)

Myers, J.; Cummins, K. L.; Hutchinson, M.; Nag, A.

2012-12-01

Lightning attachment to tall objects has been studied for decades. The attachment of lightning to electric power transmission towers in elevated terrain has driven much of the quantitative assessment of lightning characteristics in the 1970's and 80's. This has led to the understanding that in flat terrain, the probability of upward-initiated lightning is negligible for tower heights less than 100 m. For tower heights greater than 100, the probability increases roughly linearly with the log of height, reaching 100% at a height of 400 m. Additionally, the probability of upward initiation increases when the object resides on locally-elevated terrain. Over the last decade, there has been renewed interest in the study of lightning attachment to tall objects in general, and wind turbines in particular, following the establishment of large "wind farms" in lightning-prone regions. In this study, we present video observations, radiation magnetic field, and in-situ peak current measurements of lightning from an ongoing field program in a large wind farm in north-central Kansas, located in the U.S. Central Great Plains. The terrain variations within the wind farm are small rolling hills with peak variations on the order of 25 m. All turbines had a turbine hub height of 80 m, and a blade tip maximum height of 125 m. Two digital video camera systems (60 fields-per-second) were configured to self-trigger 2-second video sequences using a sequential-field-subtraction scene analysis (ufo-Capture). The two cameras had a common field of view that included 8 of the wind turbines. Nearby NLDN sensors were configured to record information that allows reconstruction of magnetic field waveforms within the bandwidth of the NLDN sensors. Some of the turbines were equipped with semi-quantitative in-situ peak current measuring devices. To date, more than 100 cloud-to-ground (CG) flashes have terminated within the perimeter of the wind farm. Video observations of flashes that attached to turbines (all to turbine blades) include five natural (downward leader) flashes and two "upward flashes" (fully developed upward leaders lasting 10's of milliseconds). Both upward flashes appear to have been triggered by nearby positive CG flashes, resulting in upward (presumably positive) leaders. Selected video observations in conjunction with NLDN data and waveform measurements, and in situ current measurements obtained during this campaign, will be presented and discussed in the context of storm characteristics. Differences with previous findings for fixed towers (no rotating blades) will also be discussed.

Expression of Superparamagnetic Particles on FORC Diagrams

NASA Astrophysics Data System (ADS)

Hirt, A. M.; Kumari, M.; Crippa, F.; Petri-Fink, A.

2015-12-01

Identification of superparamagnetic (SP) particles in natural materials provides information on processes that lead to the new formation or dissolution of iron oxides. SP particles express themselves on first-order reversal curve (FORC) diagrams as a distribution centered near the origin of the diagram. Pike et al. (2001, GJI, 145, 721) demonstrated that thermal relaxation produces an upward shift in the FORC distribution, and attributed this to a pause encountered at each reversal field. In this study we examine the relationship between this upward shift and particles size on two sets of synthetic iron oxide nanoparticles. One set of coated magnetite particles have well-constrained particles size with 9, 16 and 20 nm as their diameter. A second set from the FeraSpin™ Series, consisting of FeraSpinXS, M and XL, were evaluated. Rock magnetic experiments indicate that the first set of samples is exclusively magnetite, whereas the FeraSpin samples contain predominantly magnetite with some degree of oxidation. Samples from both sets show that the upward shift of the FORC distribution at the origin increases with decreasing particle size. The amount of shift in the FeraSpin series is less when compared to the samples from the first set. This is attributed to the effect of interaction that counteracts the effect of thermal relaxation behavior of the SP particles. The FeraSpin series also shows a broader FORC distribution on the vertical axis that appears to be related to non-saturation of the hysteresis curve at maximum applied field. This non-saturation behavior can be due to spins of very fine particles or oxidation to hematite. AC susceptibility at low temperature indicates that particle interaction may affect the effective magnetic particle size. Our results suggest that the FORC distribution in pure SP particle systems provides information on the particle size distribution or oxidation, which can be further evaluated with low temperature techniques.

In situ quantification of spatial and temporal variability of hyporheic exchange in static and mobile gravel-bed rivers

USGS Publications Warehouse

Rosenberry, Donald O.; Klos, P. Zion; Neal, Andrew

2012-01-01

Seepage meters modified for use in flowing water were used to directly measure rates of exchange between surface and subsurface water in a gravel- and cobble bed river in western Pennsylvania, USA (Allegheny River, Q mean = 190 m 3/s) and a sand- and gravel-bed river in Colorado, USA (South Platte River, Q mean = 9??7 m 3/s). Study reaches at the Allegheny River were located downstream from a dam. The bed was stable with moss, algae, and river grass present in many locations. Median seepage was + 0??28 m/d and seepage was highly variable among measurement locations. Upward and downward seepage greatly exceeded the median seepage rate, ranging from + 2??26 (upward) to - 3??76 (downward) m/d. At the South Platte River site, substantial local-scale bed topography as well as mobile bedforms resulted in spatial and temporal variability in seepage greatly in exceedence of the median groundwater discharge rate of 0??24 m/d. Both upward and downward seepage were recorded along every transect across the river with rates ranging from + 2??37 to - 3??40 m/d. Despite a stable bed, which commonly facilitates clogging by fine-grained or organic sediments, seepage rates at the Allegheny River were not reduced relative to those at the South Platte River. Seepage rate and direction depended primarily on measurement position relative to local- and meso-scale bed topography at both rivers. Hydraulic gradients were small at nearly all seepage-measurement locations and commonly were not a good indicator of seepage rate or direction. Therefore, measuring hydraulic gradient and hydraulic conductivity at in-stream piezometers may be misleading if used to determine seepage flux across the sediment-water interface. Such a method assumes that flow between the well screen and sediment-water interface is vertical, which appears to be a poor assumption in coarse-grained hyporheic settings.

Architecture and Channel-Belt Clustering in the Fluvial lower Wasatch Formation, Uinta Basin, Utah

NASA Astrophysics Data System (ADS)

Pisel, J. R.; Pyles, D. R.; Bracken, B.; Rosenbaum, C. D.

2013-12-01

The Eocene lower Wasatch Formation of the Uinta Basin contains exceptional outcrops of low net-sand content (27% sand) fluvial strata. This study quantitatively documents the stratigraphy of a 7 km wide by 300 meter thick strike-oriented outcrop in order to develop a quantitative data base that can be used to improve our knowledge of how some fluvial systems evolve over geologic time scales. Data used to document the outcrop are: (1) 550 meters of decimeter to half meter scale resolution stratigraphic columns that document grain size and physical sedimentary structures; (2) detailed photopanels used to document architectural style and lithofacies types in the outcrop; (3) thickness, width, and spatial position for all channel belts in the outcrop, and (4) directional measurements of paleocurrent indicators. Two channel-belt styles are recognized: lateral and downstream accreting channel belts; both of which occur as either single or multi-story. Floodplain strata are well exposed and consist of overbank fines and sand-rich crevasse splay deposits. Key upward and lateral characteristics of the outcrop documented herein are the following. First, the shapes of 243 channels are documented. The average width, thickness and aspect ratios of the channel belts are 110 m, 7 m, and 16:1, respectively. Importantly, the size and shape of channel belts does not change upward through the 300 meter transect. Second, channels are documented to spatially cluster. 9 clusters are documented using a spatial statistic. Key upward patterns in channel belt clustering are a marked change from non-amalgamated isolated channel-belt clusters to amalgamated channel-belt clusters. Critically, stratal surfaces can be correlated from mudstone units within the clusters to time-equivalent floodplain strata adjacent to the cluster demonstrating that clusters are not confined within fluvial valleys. Finally, proportions of floodplain and channel belt elements underlying clusters and channel belts vary with the style of clusters and channel belts laterally and vertically within the outcrop.

Depositional framework and sequence stratigraphic aspects of the Coniacian Santonian mixed siliciclastic/carbonate Matulla sediments in Nezzazat and Ekma blocks, Gulf of Suez, Egypt

NASA Astrophysics Data System (ADS)

El-Azabi, M. H.; El-Araby, A.

2007-04-01

Superb outcrops of mixed siliciclastic/carbonate rocks mark the Coniacian-Santonian Matulla Formation exposed in Nezzazat and Ekma blocks, west central Sinai. They are built up of various lithofacies that reflect minor fluctuations in relative sea-level from lower intertidal to slightly deep subtidal settings. Relying on the facies characteristics and stratal geometries, the siliciclastic rocks are divided into seven depositional facies, including beach foreshore laminated sands, upper shoreface cross-bedded sandstone, lower shoreface massive bioturbated and wave-rippled sandstones, shallow subtidal siltstone and deep subtidal shale/claystone. The carbonate rocks comprise lower intertidal lime-mudstone, floatstone and dolostone, shallow subtidal skeletal shoal of oyster rudstone/bioclastic grainstone, and shoal margin packstone. Oolitic grain-ironstone and ferribands are partially intervened the facies types. Deposition has taken place under varied conditions of restricted, partly open marine circulation, low to high wave energy and normal to raised salinity during alternating periods of abundant and ceased clastic supply. The facies types are arranged into asymmetric upward-shallowing cycles that record multiple small-scale transgressive-regressive events. Lime-mudstone and sandstone normally terminate the regressive events. Four sequence boundaries marking regional relative sea-level falls divide the Matulla Formation into three stratigraphic units. These boundaries are Turonian/Coniacian, intra-Coniacian, Coniacian/Santonian and Santonian/Campanian. They do not fit with those sequence boundaries proposed in Haq et al.'s global eustatic curves (1988) except for the sea-level fall associated with the intra-Coniacian boundary. Other sequence boundaries have resulted from regional tectonic impact of the Syrian Arc Fold System that has been initiated in north Egypt during the Latest Turonian-Coniacian. These boundaries enclose three well-defined 3rd order depositional sequences; their enclosing shallowing-upward cycles (i.e. parasequences) record the 4th order relative sea-level fluctuations. 34 and 20 parasequence sets, in the order of a few meters to tens of meters thick, mark the Matulla sequences in Nezzazat and Ekma blocks respectively. Each sequence shows an initial phase of rapid sea-level rise with retrogradational sets, followed by lowering sea-level and progradation/aggradation of the parasequence sets. The transgressive deposits display predominance of deep subtidal lagoonal facies, while highstand deposits show an increase in siliciclastic and carbonate facies with the progressive decrease of lagoonal facies. The sedimentary patterns and environments suggest that the regional, partly eustatic sea-level (i.e. intra-Coniacian) changes controlled the overall architecture of the sequence distribution, whereas changes in the clastic input controlled the variations in facies associations within each depositional sequence.

Variations in barrier-island evolution at millennial and decadal time scales related to underlying geology, Onslow Beach, NC USA

NASA Astrophysics Data System (ADS)

Yu, W.; Hood, D.; Browne, R.; Rodriguez, A. B.

2010-12-01

Located midway between Cape Fear and Cape Lookout, North Carolina, Onslow Beach is a 12 km-long barrier island, which historically had transgressive and stable profiles on the southern and northern ends, respectively. The northern half of the island has well-developed dunes in front of maritime forest. The southern half is low-lying and is characterized by washover fans infringing on salt marsh. By studying the underlying barrier lithology and structure, we will determine the evolution of the island at millennial time scales and in turn address whether the along-beach variations in barrier morphology and the historical shoreline-movement trends are related to the underlying geology. We collected 33 vibracores along 7 cross-shore transects spaced equally along Onslow Beach. Variations in topography were measured along these transects using an RTK-GPS. Cores collected from southern transects revealed multiple marsh-overwash sequences overlying estuarine deposits or a highly compacted unit typically composed of gray clay or brown medium to fine grained sand, possibly of Pleistocene age. The contact between this Pleistocene unit and the overlying estuarine deposits or thin peat layer represents the initial inundation of the area in response to Holocene sea-level rise. The elevation of this contact decreases towards the north along the island to a point where our coring methods could not penetrate deep enough to sample it (>4.0 m below the surface). In addition, marsh deposits sampled in the north below the island, which range from 30-120cm, were commonly found to be thicker than the marsh deposits sampled in the south, which range from 10-30 cm. These thick back-barrier units in the north preserve paleo overwash events as fining-upward sequences and likely accreted and were preserved due to the large accommodation space that the deep Pleistocene surface provided. The stratigraphy of the northern cores indicates a less stable Island in the past dominated by overwash. These thick sandy overwash sediments could have served as a localized source for sand that contributed to this part of the barrier becoming more stable than the southern part of the barrier as the rate of sea-level rise decreased. The cores from the highly erosive southern end of the island suggest a persistent unstable island continually dominated by overwash processes and a transgressing shoreline. These data suggests that the Pleistocene surface had a great influence on the transgressive history and contrasting morphologies on either ends of the island. Carbon dating of the Pleistocene and marsh units in future research will constrain when the island formed and the rate of change in depositional environments.

Late Miocene/Pliocene Ostracod Biostratigraphy from South Carpathian Foredeep, Romania (Badislava-Topolog Area)

NASA Astrophysics Data System (ADS)

Floroiu, Alina; Stoica, Marius; Vasiliev, Iuliana; Krijgsman, Wout

2016-04-01

The Paratethys epicontinental sea has been an essential paleogeographic feature defining the Eurasian interior since Oligocene. By the end of the Miocene, ongoing tectonic activity in the region determined severe restrictions of the connection of the large former Paratethys sea resulting in the formation of several smaller subbasins: the Pannonian basin, the Dacian basin, the Black Sea and the Caspian Sea. In the western part of the Dacian Basin, the thick and continuous Mio-Pliocene sedimentary successions of the Getic Depression of Romania provide an exceptional opportunity to study the paleoecological changes in the Eastern Paratethys during the time when the Mediterranean and Black Sea experienced important sea level changes related to the Messinian Salinity Crisis. These sedimentary successions were the basis of high-resolution magnetobiostratigraphic studies that allow a detailed correlation to the Geological Time Scale. Here, we present the main characteristics of the ostracod assemblages of the Late Miocene/Pliocene sedimentary succession from Badislava-Topolog section covering the Eastern Paratethys regional Maeotian and Pontian, stages that are, at moment, under ongoing formal stratigraphic definition process. The Mio-Pliocene is exposed in the central part of the Getic Depression, especially Topolog-Arges area, where it riches up to 500 m in thickness being incorporated into a large monocline structure with 15o-20o plungeto the south. The Upper Maeotian deposits from the area have developed mainly in fluviatile-deltaic facies with frequent continental intercalations. The ostracod assemblage is represented by rare fresh water ostracods of Candona, Pseudocandona and Ilyocypris genera, capable to populate unstable environments like flood-plains, lakes and rivers with temporary existence. The scarce Maeotian ostracod fauna from this marginal section differs essentially from the more diversified one of the same age recorded in areas that evolved in basinal conditions. The top of the Maeotian sequence is marked by an erosional surface. The overlaying Pontian has a transgressive character being represented only by the Late Pontian (Bosphorian) fining-upward sedimentary sequence that starts with coarse to medium-grained pebbles and sands in the lower part, passing to predominant pelitic deposits to the upper part. These Bosphorian, fine-grained sedimentary rocks provided a rich ostracods fauna represented mainly by species of Pontoniella, Camptocypria, Caspiocypris, Cypria, Amplocypris, Bakunella Tyrrhneocythere, Amnicythere, Loxoconcha and Amnicythere. There are no indications for the presence of the Lower and Middle Pontian (Odessian and Portaferrian) substages in the investigated area, the Upper Pontian deposits discordantly overlying the Upper Maeotian sediments. The transition to the Dacian stage (Lower Pliocene) is more gradual, some of Pontian species passing to the Lower Dacian (Getian) where they are in association with typical Dacian ostracods.

Genome-wide and fine-resolution association analysis of malaria in West Africa.

PubMed

Jallow, Muminatou; Teo, Yik Ying; Small, Kerrin S; Rockett, Kirk A; Deloukas, Panos; Clark, Taane G; Kivinen, Katja; Bojang, Kalifa A; Conway, David J; Pinder, Margaret; Sirugo, Giorgio; Sisay-Joof, Fatou; Usen, Stanley; Auburn, Sarah; Bumpstead, Suzannah J; Campino, Susana; Coffey, Alison; Dunham, Andrew; Fry, Andrew E; Green, Angela; Gwilliam, Rhian; Hunt, Sarah E; Inouye, Michael; Jeffreys, Anna E; Mendy, Alieu; Palotie, Aarno; Potter, Simon; Ragoussis, Jiannis; Rogers, Jane; Rowlands, Kate; Somaskantharajah, Elilan; Whittaker, Pamela; Widden, Claire; Donnelly, Peter; Howie, Bryan; Marchini, Jonathan; Morris, Andrew; SanJoaquin, Miguel; Achidi, Eric Akum; Agbenyega, Tsiri; Allen, Angela; Amodu, Olukemi; Corran, Patrick; Djimde, Abdoulaye; Dolo, Amagana; Doumbo, Ogobara K; Drakeley, Chris; Dunstan, Sarah; Evans, Jennifer; Farrar, Jeremy; Fernando, Deepika; Hien, Tran Tinh; Horstmann, Rolf D; Ibrahim, Muntaser; Karunaweera, Nadira; Kokwaro, Gilbert; Koram, Kwadwo A; Lemnge, Martha; Makani, Julie; Marsh, Kevin; Michon, Pascal; Modiano, David; Molyneux, Malcolm E; Mueller, Ivo; Parker, Michael; Peshu, Norbert; Plowe, Christopher V; Puijalon, Odile; Reeder, John; Reyburn, Hugh; Riley, Eleanor M; Sakuntabhai, Anavaj; Singhasivanon, Pratap; Sirima, Sodiomon; Tall, Adama; Taylor, Terrie E; Thera, Mahamadou; Troye-Blomberg, Marita; Williams, Thomas N; Wilson, Michael; Kwiatkowski, Dominic P

2009-06-01

We report a genome-wide association (GWA) study of severe malaria in The Gambia. The initial GWA scan included 2,500 children genotyped on the Affymetrix 500K GeneChip, and a replication study included 3,400 children. We used this to examine the performance of GWA methods in Africa. We found considerable population stratification, and also that signals of association at known malaria resistance loci were greatly attenuated owing to weak linkage disequilibrium (LD). To investigate possible solutions to the problem of low LD, we focused on the HbS locus, sequencing this region of the genome in 62 Gambian individuals and then using these data to conduct multipoint imputation in the GWA samples. This increased the signal of association, from P = 4 × 10(-7) to P = 4 × 10(-14), with the peak of the signal located precisely at the HbS causal variant. Our findings provide proof of principle that fine-resolution multipoint imputation, based on population-specific sequencing data, can substantially boost authentic GWA signals and enable fine mapping of causal variants in African populations.

Genesis of a zoned granite stock, Seward Peninsula, Alaska

USGS Publications Warehouse

Hudson, Travis

1977-01-01

A composite epizonal stock of biotite granite has intruded a diverse assemblage of metamorphic rocks in the Serpentine Hot Springs area of north-central Seward Peninsula, Alaska. The metamorphic rocks include amphibolite-facies orthogneiss and paragneiss, greenschist-facies fine-grained siliceous and graphitic metasediments, and a variety of carbonate rocks. Lithologic units within the metamorphic terrane trend generally north-northeast and dip moderately toward the southeast. Thrust faults locally juxtapose lithologic units in the metamorphic assemblage, and normal faults displace both the metamorphic rocks and some parts of the granite stock. The gneisses and graphitic metasediments are believed to be late Precambrian in age, but the carbonate rocks are in part Paleozoic. Dating by the potassium-argon method indicates that the granite stock is Late Cretaceous. The stock has sharp discordant contacts, beyond which is a well-developed thermal aureole with rocks of hornblende hornfels facies. The average mode of the granite is 29 percent plagioclase, 31 percent quartz, 36 percent K-feldspar, and 4 percent biotite. Accessory minerals include apatite, magnetite, sphene, allanite, and zircon. Late-stage or deuteric minerals include muscovite, fluorite, tourmaline, quartz, and albite. The stock is a zoned complex containing rocks with several textural facies that are present in four partly concentric zones. Zone 1 is a discontinuous border unit, containing fine- to coarse-grained biotite granite, that grades inward into zone 2. Zone 2 consists of porphyritic biotite granite with oriented phenocrysts of pinkish-gray microcline in a coarse-grained equigranular groundmass of plagioclase, quartz, and biotite. It is in sharp, concordant to discordant contact with rocks of zone 3. Zone 3 consists of seriate-textured biotite granite that has been intruded by bodies of porphyritic biotite granite containing phenocrysts of plagioclase, K-feldspar, quartz, and biotite in an aplitic groundmass. Flow structures, pegmatite and aplite segregations, and miarolitic cavities are common in the seriate-textured granite. Zone 4, which forms the central part of the complex, consists of fine- to medium-grained biotite granite and locally developed leucogranite. Small miarolitic cavities are common within it. Eight textural facies have been defined within the complex, and mineralogic, petrographic, modal, and chemical variations are broadly systematic within the facies sequence. Study of these variations shows that the gradational facies of zones l and 2 systematically shift toward more mafic compositions inward within the complex. Seriate-textured rocks of zone 3 are similar in composition to those of zone 2, but porphyritic rocks of zone 3 and rocks of zone 4 mark shifts to more felsic compositions. These late-crystallizing felsic rocks are products of an interior residual magma system. This system was enriched in water and certain trace elements including tin, lithium, niobium, lead, and zinc. The complex as a whole has higher concentrations of these elements than many other granites. The nature of this geochemical specialization is particularly well demonstrated by the trace-element composition of biotite. The crystallization history of the pluton was complex. The available data suggest that this history could have included: (1) chilling and metasomatic alteration adjacent to the contact, (2) in-situ crystallization in several marginal facies accompanied by some transfer of residual constituents toward interior parts of the pluton, (3) slight upward displacement of magma that was subjacent to the crystallized walls, accompanied by disequilibrium crystallization and local vapor saturation, (4) upward displacement of part of the residual water-rich interior magma, accompanied by rapid loss of a separated vapor phase, and (5) displacement of the margins of the pluton by normal faults, accompanied by loss of an exsolved vapor phase from th

34 CFR 645.1 - What is the Upward Bound Program?

Code of Federal Regulations, 2013 CFR

2013-07-01

... the following three types of projects: (1) Regular Upward Bound projects. (2) Upward Bound Math and Science Centers. (3) Veterans Upward Bound projects. (Authority: 20 U.S.C. 1070a-11 and 1070a-13) ...) The Upward Bound Program provides Federal grants to projects designed to generate in program...

34 CFR 645.1 - What is the Upward Bound Program?

Code of Federal Regulations, 2014 CFR

2014-07-01

... the following three types of projects: (1) Regular Upward Bound projects. (2) Upward Bound Math and Science Centers. (3) Veterans Upward Bound projects. (Authority: 20 U.S.C. 1070a-11 and 1070a-13) ...) The Upward Bound Program provides Federal grants to projects designed to generate in program...

34 CFR 645.42 - What are Upward Bound stipends?

Code of Federal Regulations, 2012 CFR

2012-07-01

... grantee is permitted to provide: (1) For Regular Upward Bound projects and Upward Bound Math and Science... What are Upward Bound stipends? (a) An Upward Bound project may provide stipends for all participants... evidence of satisfactory participation in activities of the project including— (1) Regular attendance; and...

34 CFR 645.42 - What are Upward Bound stipends?

Code of Federal Regulations, 2013 CFR

2013-07-01

... grantee is permitted to provide: (1) For Regular Upward Bound projects and Upward Bound Math and Science... What are Upward Bound stipends? (a) An Upward Bound project may provide stipends for all participants... evidence of satisfactory participation in activities of the project including— (1) Regular attendance; and...

34 CFR 645.42 - What are Upward Bound stipends?

Code of Federal Regulations, 2014 CFR

2014-07-01

... grantee is permitted to provide: (1) For Regular Upward Bound projects and Upward Bound Math and Science... What are Upward Bound stipends? (a) An Upward Bound project may provide stipends for all participants... evidence of satisfactory participation in activities of the project including— (1) Regular attendance; and...

34 CFR 645.1 - What is the Upward Bound Program?

Code of Federal Regulations, 2012 CFR

2012-07-01

... the following three types of projects: (1) Regular Upward Bound projects. (2) Upward Bound Math and Science Centers. (3) Veterans Upward Bound projects. (Authority: 20 U.S.C. 1070a-11 and 1070a-13) ...) The Upward Bound Program provides Federal grants to projects designed to generate in program...

34 CFR 645.1 - What is the Upward Bound Program?

Code of Federal Regulations, 2011 CFR

2011-07-01

... the following three types of projects: (1) Regular Upward Bound projects. (2) Upward Bound Math and Science Centers. (3) Veterans Upward Bound projects. (Authority: 20 U.S.C. 1070a-11 and 1070a-13) ...) The Upward Bound Program provides Federal grants to projects designed to generate in program...

Eustatic and tectonic control of deposition of the lower and middle Pennsylvanian strata of the Central Appalachian Basin

USGS Publications Warehouse

Chesnut, D.R.

1997-01-01

Stratigraphic analysis of Lower and Middle Pennsylvanian rocks of part of the Central Appalachian Basin reveals two orders of cycles and one overall trend in the vertical sequence of coal-bearing rocks. The smallest order cycle, the coal-clastic cycle, begins at the top of a major-resource coal bed and is composed of a vertical sequence of shale, siltstone, sandstone, seat rock, and overlying coal, which, in turn, is overlain by the next coal-clastic sequence. The average duration of the coal-clastic cycle has been calculated to be about 0.4 m.y. The major marine-transgression cycle is composed of five to seven coal-clastic cycles and is distinguished by the occurrence of widespread, relatively thick (generally thicker than 5 m) marine strata at its base. The duration of this cycle has been calculated to be about 2.5 m.y. The Breathitt coarsening-upward trend describes the general upward coarsening of the Middle Pennsylvanian part of the Breathitt Group. The Breathitt Group includes eight major marine-transgression cycles, and was deposited during a period of approximately 20 m.y. The average duration of coal-clastic cycles is of the same order of magnitude (105 year) as the Milankovitch orbital-eccentricity cycles, and matches the 0.4 m.y. second-order eccentricity cycle (Long Earth-Eccentricity cycle). These orbital periodicities are thought to modulate glacial stages and glacio-eustatic levels. The calculated periodicities of the coal-clastic cycles can be used as evidence for glacio-eustatic control of the coal-bearing rocks of the Appalachian Basin. The 2.5-m.y. periodicity of the major marine-transgression cycle does not match any known orbital or tectonic cycle; the cause of this cycle is unknown, but it might represent episodic thrusting in the orogen, propagation of intraplate stresses, or an unidentified orbital cycle. The Breathitt coarsening-upward trend is interpreted to represent the increasing intensity and proximity of the Alleghenian Orogeny. Previously, tectonic subsidence of the basin was considered to be the dominant control on deposition of the coal-bearing rocks of the basin. However, new calculations show that eustatic rates are more significant than averaged subsidence rates for the Pennsylvanian Appalachian Basin. Accordingly, sea-level changes are considered to be a dominant control on coastal sedimentation during the Pennsylvanian. However, tectonic subsidence created the accomodation space for preservation of various orders of cyclic sedimentation; the preserved order of cycles was dependent upon the rate of subsidence from basin margin to axis.

Sandstone-body and shale-body dimensions in a braided fluvial system: Salt wash sandstone member (Morrison formation), Garfield County, Utah

USGS Publications Warehouse

Robinson, J.W.; McCabea, P.J.

1997-01-01

Excellent three-dimensional exposures of the Upper Jurassic Salt Wash Sandstone Member of the Morrison Formation in the Henry Mountains area of southern Utah allow measurement of the thickness and width of fluvial sandstone and shale bodies from extensive photomosaics. The Salt Wash Sandstone Member is composed of fluvial channel fill, abandoned channel fill, and overbank/flood-plain strata that were deposited on a broad alluvial plain of low-sinuosity, sandy, braided streams flowing northeast. A hierarchy of sandstone and shale bodies in the Salt Wash Sandstone Member includes, in ascending order, trough cross-bedding, fining-upward units/mudstone intraclast conglomerates, singlestory sandstone bodies/basal conglomerate, abandoned channel fill, multistory sandstone bodies, and overbank/flood-plain heterolithic strata. Trough cross-beds have an average width:thickness ratio (W:T) of 8.5:1 in the lower interval of the Salt Wash Sandstone Member and 10.4:1 in the upper interval. Fining-upward units are 0.5-3.0 m thick and 3-11 m wide. Single-story sandstone bodies in the upper interval are wider and thicker than their counterparts in the lower interval, based on average W:T, linear regression analysis, and cumulative relative frequency graphs. Multistory sandstone bodies are composed of two to eight stories, range up to 30 m thick and over 1500 m wide (W:T > 50:1), and are also larger in the upper interval. Heterolithic units between sandstone bodies include abandoned channel fill (W:T = 33:1) and overbank/flood-plain deposits (W:T = 70:1). Understanding W:T ratios from the component parts of an ancient, sandy, braided stream deposit can be applied in several ways to similar strata in other basins; for example, to (1) determine the width of a unit when only the thickness is known, (2) create correlation guidelines and maximum correlation lengths, (3) aid in interpreting the controls on fluvial architecture, and (4) place additional constraints on input variables to stratigraphie and fluid-flow modeling. The usefulness of these types of data demonstrates the need to develop more data sets from other depositional environments.

High-resolution sedimentological and subsidence analysis of the Late Neogene, Pannonian Basin, Hungary

USGS Publications Warehouse

Juhasz, E.; Muller, P.; Toth-Makk, A.; Hamor, T.; Farkas-Bulla, J.; Suto-Szentai, M.; Phillips, R.L.; Ricketts, B.

1996-01-01

Detailed sedimentological and paleontological analyses were carried out on more than 13,000 m of core from ten boreholes in the Late Neogene sediments of the Pannonian Basin, Hungary. These data provide the basis for determining the character of high-order depositional cycles and their stacking patterns. In the Late Neogene sediments of the Pannonian Basin there are two third-order sequences: the Late Miocene and the Pliocene ones. The Miocene sequence shows a regressive, upward-coarsening trend. There are four distinguishable sedimentary units in this sequence: the basal transgressive, the lower aggradational, the progradational and the upper aggradational units. The Pliocene sequence is also of aggradational character. The progradation does not coincide in time in the wells within the basin. The character of the relative water-level curves is similar throughout the basin but shows only very faint similarity to the sea-level curve. Therefore, it is unlikely that eustasy played any significant role in the pattern of basin filling. Rather, the dominant controls were the rapidly changing basin subsidence and high sedimentation rates, together with possible climatic factors.

High-density genetic map construction and comparative genome analysis in asparagus bean.

PubMed

Huang, Haitao; Tan, Huaqiang; Xu, Dongmei; Tang, Yi; Niu, Yisong; Lai, Yunsong; Tie, Manman; Li, Huanxiu

2018-03-19

Genetic maps are a prerequisite for quantitative trait locus (QTL) analysis, marker-assisted selection (MAS), fine gene mapping, and assembly of genome sequences. So far, several asparagus bean linkage maps have been established using various kinds of molecular markers. However, these maps were all constructed by gel- or array-based markers. No maps based on sequencing method have been reported. In this study, an NGS-based strategy, SLAF-seq, was applied to create a high-density genetic map for asparagus bean. Through SLAF library construction and Illumina sequencing of two parents and 100 F2 individuals, a total of 55,437 polymorphic SLAF markers were developed and mined for SNP markers. The map consisted of 5,225 SNP markers in 11 LGs, spanning a total distance of 1,850.81 cM, with an average distance between markers of 0.35 cM. Comparative genome analysis with four other legume species, soybean, common bean, mung bean and adzuki bean showed that asparagus bean is genetically more related to adzuki bean. The results will provide a foundation for future genomic research, such as QTL fine mapping, comparative mapping in pulses, and offer support for assembling asparagus bean genome sequence.

Cations Form Sequence Selective Motifs within DNA Grooves via a Combination of Cation-Pi and Ion-Dipole/Hydrogen Bond Interactions

PubMed Central

Stewart, Mikaela; Dunlap, Tori; Dourlain, Elizabeth; Grant, Bryce; McFail-Isom, Lori

2013-01-01

The fine conformational subtleties of DNA structure modulate many fundamental cellular processes including gene activation/repression, cellular division, and DNA repair. Most of these cellular processes rely on the conformational heterogeneity of specific DNA sequences. Factors including those structural characteristics inherent in the particular base sequence as well as those induced through interaction with solvent components combine to produce fine DNA structural variation including helical flexibility and conformation. Cation-pi interactions between solvent cations or their first hydration shell waters and the faces of DNA bases form sequence selectively and contribute to DNA structural heterogeneity. In this paper, we detect and characterize the binding patterns found in cation-pi interactions between solvent cations and DNA bases in a set of high resolution x-ray crystal structures. Specifically, we found that monovalent cations (Tl+) and the polarized first hydration shell waters of divalent cations (Mg2+, Ca2+) form cation-pi interactions with DNA bases stabilizing unstacked conformations. When these cation-pi interactions are combined with electrostatic interactions a pattern of specific binding motifs is formed within the grooves. PMID:23940752

Cations form sequence selective motifs within DNA grooves via a combination of cation-pi and ion-dipole/hydrogen bond interactions.

PubMed

Stewart, Mikaela; Dunlap, Tori; Dourlain, Elizabeth; Grant, Bryce; McFail-Isom, Lori

2013-01-01

The fine conformational subtleties of DNA structure modulate many fundamental cellular processes including gene activation/repression, cellular division, and DNA repair. Most of these cellular processes rely on the conformational heterogeneity of specific DNA sequences. Factors including those structural characteristics inherent in the particular base sequence as well as those induced through interaction with solvent components combine to produce fine DNA structural variation including helical flexibility and conformation. Cation-pi interactions between solvent cations or their first hydration shell waters and the faces of DNA bases form sequence selectively and contribute to DNA structural heterogeneity. In this paper, we detect and characterize the binding patterns found in cation-pi interactions between solvent cations and DNA bases in a set of high resolution x-ray crystal structures. Specifically, we found that monovalent cations (Tl⁺) and the polarized first hydration shell waters of divalent cations (Mg²⁺, Ca²⁺) form cation-pi interactions with DNA bases stabilizing unstacked conformations. When these cation-pi interactions are combined with electrostatic interactions a pattern of specific binding motifs is formed within the grooves.

Observations of vertical winds and the origin of thermospheric gravity waves launched by auroral substorms and westward travelling surges

NASA Technical Reports Server (NTRS)

Rees, D.

1986-01-01

Several sequences of observations of strong vertical winds in the upper thermosphere are discussed, in conjunction with models of the generation of such winds. In the auroral oval, the strongest upward winds are observed in or close to regions of intense auroral precipitation and strong ionospheric currents. The strongest winds, of the order of 100 to 200 m/sec are usually upward, and are both localized and of relatively short duration (10 to 20 min). In regions adjacent to those displaying strong upward winds, and following periods of upward winds, downward winds of rather lower magnitude (40 to about 80 m/sec) may be observed. Strong and rapid changes of horizontal winds are correlated with these rapid vertical wind variations. Considered from a large scale viewpoint, this class of strongly time dependent winds propagate globally, and may be considered to be gravity waves launched from an auroral source. During periods of very disturbed geomagnetic activity, there may be regions within and close to the auroral oval where systematic vertical winds of the order of 50 m/sec will occur for periods of several hours. Such persistent winds are part of a very strong large scale horizontal wind circulation set up in the polar regions during a major geomagnetic disturbance. This second class of strong horizontal and vertical winds corresponds more to a standing wave than to a gravity wave, and it is not as effective as the first class in generating large scale propagating gravity waves and correlated horizontal and vertical oscillations. A third class of significant (10 to 30 m/sec) vertical winds can be associated with systematic features of the average geomagnetic energy and momentum input to the polar thermosphere, and appear in statistical studies of the average vertical wind as a function of Universal Time at a given location.

Isolation of Vibrio tapetis from two native fish species (Genypterus chilensis and Paralichthys adspersus) reared in Chile and description of Vibrio tapetis subsp. quintayensis subsp. nov.

PubMed

Levican, Arturo; Lasa, Aide; Irgang, Rute; Romalde, Jesús L; Poblete-Morales, Matías; Avendaño-Herrera, Ruben

2017-04-01

A group of seven Chilean isolates presumptively belonging to Vibrio tapetis was isolated from diseased fine flounders (Paralichthys adspersus) and red conger eel (Genypterus chilensis) experimentally reared in Quintay (Chile). All isolates were confirmed as members of V. tapetis on the basis of matrix-assisted laser desorption ionization time-of-flight MS, 16S rRNA gene sequencing, DNA-DNA hybridization values and G+C content. The ERIC-PCR and REP-PCR patterns were homogeneous among those isolates recovered from the same host (red conger or fine flounders), but distinct from the type strains V. tapetis subsp. tapetis CECT 4600T and V. tapetis subsp. britannicus CECT 8161T. On the basis of atpA, rpoA, rpoD, recA and pyrH gene sequence similarities (99.7-100 %) and clustering in the phylogenetic trees, the red conger isolates (Q20, Q047, Q48 and Q50) were confirmed as representing V. tapetis subsp. tapetis. However, they differed from V. tapetis subsp. tapetis CECT 4600T in their lipase, alpha quimiotripsin and non-acid phosphatase production. On the other hand, the fine flounder isolates (QL-9T, QL-35 and QL-41) showed rpoD, recA and pyrH gene sequence similarities ranging from 91.6 to 97.7 % with the type strains of the two V. tapetis subspecies (CECT 4600T and CECT 8161T) and consistently clustered together as an independent phylogenetic line within V. tapetis. Moreover, they could be differentiated phenotypically from strains CECT 4600T and CECT 8161T by nine and three different biochemical tests, respectively. In conclusion, the presence of V. tapetis in diseased red conger eel and fine flounder was demonstrated, extending the known host range and geographical location for this pathogen. Furthermore, this study demonstrates that the three isolates from fine flounder represent a novel subdivision within V. tapetis, for which the name V. tapetis subsp. quintayensis subsp. nov. is proposed and with QL-9T (=CECT 8851T=LMG 28759T) as the type strain. Although QL-9T was isolated from kidney of diseased fine flounder specimens, the challenge assays showed that it was non-pathogenic for this species.

Exploiting sequence similarity to validate the sensitivity of SNP arrays in detecting fine-scaled copy number variations.

PubMed

Wong, Gerard; Leckie, Christopher; Gorringe, Kylie L; Haviv, Izhak; Campbell, Ian G; Kowalczyk, Adam

2010-04-15

High-density single nucleotide polymorphism (SNP) genotyping arrays are efficient and cost effective platforms for the detection of copy number variation (CNV). To ensure accuracy in probe synthesis and to minimize production costs, short oligonucleotide probe sequences are used. The use of short probe sequences limits the specificity of binding targets in the human genome. The specificity of these short probeset sequences has yet to be fully analysed against a normal reference human genome. Sequence similarity can artificially elevate or suppress copy number measurements, and hence reduce the reliability of affected probe readings. For the purpose of detecting narrow CNVs reliably down to the width of a single probeset, sequence similarity is an important issue that needs to be addressed. We surveyed the Affymetrix Human Mapping SNP arrays for probeset sequence similarity against the reference human genome. Utilizing sequence similarity results, we identified a collection of fine-scaled putative CNVs between gender from autosomal probesets whose sequence matches various loci on the sex chromosomes. To detect these variations, we utilized our statistical approach, Detecting REcurrent Copy number change using rank-order Statistics (DRECS), and showed that its performance was superior and more stable than the t-test in detecting CNVs. Through the application of DRECS on the HapMap population datasets with multi-matching probesets filtered, we identified biologically relevant SNPs in aberrant regions across populations with known association to physical traits, such as height, covered by the span of a single probe. This provided empirical confirmation of the existence of naturally occurring narrow CNVs as well as the sensitivity of the Affymetrix SNP array technology in detecting them. The MATLAB implementation of DRECS is available at http://ww2.cs.mu.oz.au/ approximately gwong/DRECS/index.html.

The Fluid Flow Evolution During the Seismic Cycle Within Overpressured Fault Zones

NASA Astrophysics Data System (ADS)

de Paola, Nicola; Vanhunen, Jeroen; Collettini, Cristiano; Faulkner, Dan

2010-05-01

The integration of seismic reflection profiles with well-located earthquakes shows that the mainshocks of the 1997 Umbria-Marche seismic sequence (Mw < 6) nucleated at about 6 km depth, within the Triassic Evaporites, a 2 km thick sequence made of interbedded anhydrites and dolostones. Two boreholes, drilled northwest of the epicentral area, encountered CO2 fluid overpressures at about 0.8 of the lithostatic load, at about 4 km depth. It has been proposed that the time-space evolution of the 1997 aftershock sequence, was driven by the coseismic release of trapped high-pressure fluids (lv = 0.8), within the Triassic Evaporites. In order to understand whether CO2 fluid overpressure can be maintained up to the coseismic period, and trigger earthquake nucleation, we modelled fluid flow through a mature fault zone within the Triassic Evaporites. We assume that fluid flow within the fault zone occurs in accord with the Darcy's Law. Under this condition, a near lithostatic pore pressure gradient can develop, within the fault zone, when the upward transport of fluid along the fault zone exceeds the fluid loss in a horizontal direction. Our model's parameters are: a) Fault zone structure: model inputs have been obtained from large fault zone analogues derived from field observation. The architecture of large fault zones within the TE is given by a distinct fault core, up to few meters thick, of very fine-grained fault rocks (cataclasites and fault gouge), where most of the shear strain has been accommodated, surrounded by a geometrically complex and heterogeneous damage zone (up to few tens of meters wide). The damage zone is characterized by adjacent zones of heavily fractured rocks (dolostones) and foliated rocks displaying little fracturing (anhydrites). b) Fault zone permeability: field data suggests that the permeability of the fault core is relatively low due to the presence of fine grained fault rocks (k < 10E-18 m2). The permeability of the dolostones, within the damage zone, is likely to be high and controlled by mesoscale fracture patterns (k > 10E-17 m2). For the anhydrites, the permeability and porosity development was continuously measured prior and throughout triaxial loading tests, performed on borehole samples. The permeability of the anhydrites within the damage zone, due to the absence of mesoscale fracture patterns within Ca-sulphates layers, has been assumed to be as low as the values measured during our lab experiments (k = 10E-17 - 10E-20 m2). Our model results show that, during the seismic cycle, the lateral fluid flux, across the fault zone, is always lower than the vertical parallel fluid flux. Under these conditions fluid overpressure within the fault zone can be sustained up to the coseismic period when earthquake nucleation occurs. Our modelling shows that during extensional loading, overpressured fault zones within the Triassic Evaporites may develop and act as asperities, i.e. they are mechanically weaker than faults within the overlain carbonates at hydrostatic (lv = 0.4) pore fluid pressure conditions.

Sedimentary processes associated with sand and boulder deposits formed by the 2011 Tohoku-oki tsunami at Sabusawa Island, Japan

NASA Astrophysics Data System (ADS)

Goto, Kazuhisa; Sugawara, Daisuke; Ikema, Satoko; Miyagi, Toyohiko

2012-12-01

This paper reports on the sedimentary processes of sand and boulder deposition at Sabusawa Island, Japan as a result of the 2011 Tohoku-oki tsunami. Boulders were composed of tuffaceous rocks and sourced from an earthquake-triggered slope failure as well as concrete fragments of seawall. They were scattered over the ground surface and did not form boulder ridges, although there was some local imbrication. The boulders were deposited on top of a sand layer indicating that the latter, possibly deposited from bed load, covered the ground surface first. This sand layer probably reduced friction allowing boulders to be transported more easily than might be expected across a hard ground with a high bottom friction. Sand deposits showed landward thinning and fining features, while the boulders showed a landward coarsening (tuffaceous boulders) or a landward fining (concrete boulders), indicating that large clasts were not necessarily scattered randomly but rather might have a clast size gradient with distance inland. These features are explained by the local topographic setting that constrained the directions of incoming and returning tsunami flows. Some clasts at the inland extent of the boulder field were covered by an upward fining sand layer. This feature suggests that the boulders were deposited prior to the suspended sands, with the latter subsequently laid down before the water level dropped below the top of the boulders. Such modern investigations of the sedimentary features of various sizes of grains and clasts immediately after a tsunami provide invaluable data for the reconstruction of inundation processes.

Depositional environment of downdip Yegua (Eocene) sandstones, Jackson County, Texas

DOE Office of Scientific and Technical Information (OSTI.GOV)

Whitten, C.J.; Berg, R.R.

Yegua sandstones at a depth of 8300-8580 ft (2530-2615 m) were partly cored in the Arco Jansky 1 dry hole. Total thickness of the sandstone section is approximately 240 ft (73 m). The sandstones are enclosed in thick marine shales and are about 20 mi (32 km) downdip from thicker and more abundant sandstones in the Yegua Formation. The section is similar to reservoirs recently discovered in the area at the Toro Grande (1984), Lost Bridge (1984), and El Torito (1985) fields. The sandstones are fine to very fine grained and occur in thin beds that are 0.5-9 ft (0.15-2.7more » m) thick. Sedimentary structures within the beds range from a lower massive division to a laminated or rippled upper division. Grain size within beds fines upward from 0.18 mm at the base to 0.05 mm at the top. The sandstones are interpreted to be turbidites of the AB type that were deposited within channels. The sandstones contain an average of 50% quartz and are classified as volcanic-arenites to feldspathic litharenites. Carbonate cement ranges from 0 to 27%. Average porosity is 29% and permeabilities are in the range of 60-1600 md in the clean sandstones. Much of the porosity is secondary and is the result of the dissolution of cements, volcanic rock fragments, and feldspar grains. Yegua sandstones produce gas and condensate at nearby Toro Grande field on a gentle, faulted anticline. The local trend of reservoir sandstones may be controlled in part by faulting that was contemporaneous with deposition.« less

Stratigraphic architecture of a fluvial-lacustrine basin-fill succession at Desolation Canyon, Uinta Basin, Utah: Reference to Walthers’ Law and implications for the petroleum industry

USGS Publications Warehouse

Ford, Grace L.; David R. Pyles,; Dechesne, Marieke

2016-01-01

Two large-scale (member-scale) upward patterns are noted: Waltherian, and non-Waltherian. The upward successions in Waltherian progressions record progradation or retrogradation of a linked fluvial-lacustrine system across the area; whereas the upward successions in non-Waltherian progressions record large-scale changes in the depositional system that are not related to progradation or retrogradation of the ancient lacustrine shoreline. Four Waltherian progressions are noted: 1) the Flagstaff Limestone to lower Wasatch Formation member records the upward transition from lacustrine to fluvial—or shallowing-upward succession; 2) the upper Wasatch to Uteland Butte records the upward transition from fluvial to lacustrine—or a deepening upward succession; 3) the Uteland Butte to Renegade Tongue records the upward transition from lacustrine to fluvial—a shallowing-upward succession; and 4) the Renegade Tongue to Mahogany oil shale interval records the upward transition from fluvial to lacustrine—a deepening upward succession. The two non-Waltherian progressions in the study area are: 1) the lower to middle Wasatch, which records the abrupt shift from low to high net-sand content fluvial system, and 2) the middle to upper Wasatch, which records the abrupt shift from high to intermediate net-sand content fluvial system.

Fine mapping of Restorer-of-fertility in pepper (Capsicum annuum L.) identified a candidate gene encoding a pentatricopeptide repeat (PPR)-containing protein.

PubMed

Jo, Yeong Deuk; Ha, Yeaseong; Lee, Joung-Ho; Park, Minkyu; Bergsma, Alex C; Choi, Hong-Il; Goritschnig, Sandra; Kloosterman, Bjorn; van Dijk, Peter J; Choi, Doil; Kang, Byoung-Cheorl

2016-10-01

Using fine mapping techniques, the genomic region co-segregating with Restorer - of - fertility ( Rf ) in pepper was delimited to a region of 821 kb in length. A PPR gene in this region, CaPPR6 , was identified as a strong candidate for Rf based on expression pattern and characteristics of encoding sequence. Cytoplasmic-genic male sterility (CGMS) has been used for the efficient production of hybrid seeds in peppers (Capsicum annuum L.). Although the mitochondrial candidate genes that might be responsible for cytoplasmic male sterility (CMS) have been identified, the nuclear Restorer-of-fertility (Rf) gene has not been isolated. To identify the genomic region co-segregating with Rf in pepper, we performed fine mapping using an Rf-segregating population consisting of 1068 F2 individuals, based on BSA-AFLP and a comparative mapping approach. Through six cycles of chromosome walking, the co-segregating region harboring the Rf locus was delimited to be within 821 kb of sequence. Prediction of expressed genes in this region based on transcription analysis revealed four candidate genes. Among these, CaPPR6 encodes a pentatricopeptide repeat (PPR) protein with PPR motifs that are repeated 14 times. Characterization of the CaPPR6 protein sequence, based on alignment with other homologs, showed that CaPPR6 is a typical Rf-like (RFL) gene reported to have undergone diversifying selection during evolution. A marker developed from a sequence near CaPPR6 showed a higher prediction rate of the Rf phenotype than those of previously developed markers when applied to a panel of breeding lines of diverse origin. These results suggest that CaPPR6 is a strong candidate for the Rf gene in pepper.

Alanine-170 and proline-172 are critical determinants for extracellular CD20 epitopes; heterogeneity in the fine specificity of CD20 monoclonal antibodies is defined by additional requirements imposed by both amino acid sequence and quaternary structure.

PubMed

Polyak, Maria J; Deans, Julie P

2002-05-01

In vivo ablation of malignant B cells can be achieved using antibodies directed against the CD20 antigen. Fine specificity differences among CD20 monoclonal antibodies (mAbs) are assumed not to be a factor in determining their efficacy because evidence from antibody-blocking studies indicates limited epitope diversity with only 2 overlapping extracellular CD20 epitopes. However, in this report a high degree of heterogeneity among antihuman CD20 mAbs is demonstrated. Mutation of alanine and proline at positions 170 and 172 (AxP) (single-letter amino acid codes; x indicates the identical amino acid at the same position in the murine and human CD20 sequences) in human CD20 abrogated the binding of all CD20 mAbs tested. Introduction of AxP into the equivalent positions in the murine sequence, which is not otherwise recognized by antihuman CD20 mAbs, fully reconstituted the epitope recognized by B1, the prototypic anti-CD20 mAb. 2H7, a mAb previously thought to recognize the same epitope as B1, did not recognize the murine AxP mutant. Reconstitution of the 2H7 epitope was achieved with additional mutations replacing VDxxD in the murine sequence for INxxN (positions 162-166 in the human sequence). The integrity of the 2H7 epitope, unlike that of B1, further depends on the maintenance of CD20 in an oligomeric complex. The majority of 16 antihuman CD20 mAbs tested, including rituximab, bound to murine CD20 containing the AxP mutations. Heterogeneity in the fine specificity of these antibodies was indicated by marked differences in their ability to induce homotypic cellular aggregation and translocation of CD20 to a detergent-insoluble membrane compartment previously identified as lipid rafts.

Strongly gliding harmonic tremor during the 2009 eruption of Redoubt Volcano

USGS Publications Warehouse

Hotovec, Alicia J.; Prejean, Stephanie G.; Vidale, John E.; Gomberg, Joan S.

2013-01-01

During the 2009 eruption of Redoubt Volcano, Alaska, gliding harmonic tremor occurred prominently before six nearly consecutive explosions during the second half of the eruptive sequence. The fundamental frequency repeatedly glided upward from < 1 Hz to as high as 30 Hz in less than 10 min, followed by a relative seismic quiescence of 10 to 60 s immediately prior to explosion. High frequency (5 to 20 Hz) gliding returned during the extrusive phase, and lasted for 20 min to 3 h at a time. Although harmonic tremor is not uncommon at volcanoes, tremor at such high frequencies is a rare observation. These frequencies approach or exceed the plausible upper limits of many models that have been suggested for volcanic tremor. We also analyzed the behavior of a swarm of repeating earthquakes that immediately preceded the first instance of pre-explosion gliding harmonic tremor. We find that these earthquakes share several traits with upward gliding harmonic tremor, and favor the explanation that the gliding harmonic tremor at Redoubt Volcano is created by the superposition of increasingly frequent and regular, repeating stick–slip earthquakes through the Dirac comb effect.

Paleoenvironmental interpretation of section of Rosario Formation in Ensenada, Baja California, Mexico

DOE Office of Scientific and Technical Information (OSTI.GOV)

Tellez-Duarte, M.A.; Ferman-Almada, J.L.

In contrast to previous interpretations of the Rosario Formation in other parts of Baja California, a stratigraphic section 6 km north of Ensenada, Baja California, Mexico, contains evidences for deposition in shallow waters during a regressive event in a steep slope basin. Among the sedimentary evidence, the section shows a coarse, shoaling-upward sequence, with high-angle cross-stratification and planar bed lamination. Load structures with a westward orientation were found only at the base. The fossils assemblages support the same shoaling-upward interpretation as the sedimentary evidence, with ammonoids and deposit feeder trace fossils (such as Chondrites) at the bottom to mollusks andmore » suspension feeder trace fossils (such as Scolicia and Ophiomorpha, characteristic of shallower waters) at the top. This sedimentologic and paleontologic evidence suggests nearshore to beach coastal deposits. The contact between the section and a discontinuous thin limestone bed at the top of the section shows an unconformity. The absence of well-preserved fossils makes this limestone difficult to date, but the lithology is similar to that of Paleocene Sepultura Formation limestones.« less

BAC sequencing using pooled methods.

PubMed

Saski, Christopher A; Feltus, F Alex; Parida, Laxmi; Haiminen, Niina

2015-01-01

Shotgun sequencing and assembly of a large, complex genome can be both expensive and challenging to accurately reconstruct the true genome sequence. Repetitive DNA arrays, paralogous sequences, polyploidy, and heterozygosity are main factors that plague de novo genome sequencing projects that typically result in highly fragmented assemblies and are difficult to extract biological meaning. Targeted, sub-genomic sequencing offers complexity reduction by removing distal segments of the genome and a systematic mechanism for exploring prioritized genomic content through BAC sequencing. If one isolates and sequences the genome fraction that encodes the relevant biological information, then it is possible to reduce overall sequencing costs and efforts that target a genomic segment. This chapter describes the sub-genome assembly protocol for an organism based upon a BAC tiling path derived from a genome-scale physical map or from fine mapping using BACs to target sub-genomic regions. Methods that are described include BAC isolation and mapping, DNA sequencing, and sequence assembly.

Depositional and tectonic setting of the Archean Moodies Group, Barberton Greenstone Belt, South Africa

NASA Technical Reports Server (NTRS)

Heubeck, C.; Lowe, D. R.

1994-01-01

The 3.22-3.10 Ga old Moodies Group, uppermost unit of the Swaziland Supergroup in the Barberton Greenstone Belt (BGB), is the oldest exposed, well-preserved quartz-rich sedimentary sequence on earth. It is preserved in structurally separate blocks in a heavily deformed fold-and-thrust belt. North of the Inyoka Fault, Moodies strata reach up to 3700 m in thickness. Detailed mapping, correlation of measured sections, and systematic analysis of paleocurrents show that the lower Moodies Group north of the Inyoka Fault forms a deepening- and fining-upward sequence from a basal alluvial conglomerate through braided fluvial, tidal, and deltaic sandstones to offshore sandy shelf deposits. The basal conglomerate and overlying fluvial facies were derived from the north and include abundant detritus eroded from underlying Fig Tree Group dacitic volcanic rocks. Shoreline-parallel transport and extensive reworking dominate overlying deltaic, tidal, and marine facies. The lithologies and arrangement of Moodies Group facies, sandstone petrology, the unconformable relationship between Moodies strata and older deformed rocks, presence of at least one syndepositional normal fault, and presence of basaltic flow rocks and airfall fall tuffs interbedded with the terrestrial strata collectively suggest that the lower Moodies Group was deposited in one or more intramontane basins in an extensional setting. Thinner Moodies sections south of the Inyoka Fault, generally less than 1000 m thick, may be correlative with the basal Moodies Group north of the Inyoka Fault and were probably deposited in separate basins. A northerly derived, southward-thinning fan-delta conglomerate in the upper part of the Moodies Group in the central BGB overlies lower strata with an angular unconformity. This and associated upper Moodies conglomerates mark the beginning of basin shortening by south- to southeast-directed thrust faulting along the northern margin of the BGB and suggest that the upper Moodies Group was deposited in a foreland basin. Timing, orientation, and style of shortening suggest that this deformation eventually incorporated most of the BGB into a major fold-and-thrust belt.

Sedimentologic and Geometric Characterization of Turbidites of Brazos-Trinity Basin IV in the Gulf of Mexico: Preliminary Results of IODP Expedition 308

NASA Astrophysics Data System (ADS)

Gutierrez-Pastor, J.; Pirmez, C.; Flemings, P. B.; Behrmann, J. H.; John, C. M.

2005-12-01

Brazos Trinity Basin IV is located about 200 km offshore Texas, and belongs to a linked system of four intra slope mini basins. Basin IV provides a type section to characterize turbidites in salt withdrawal mini-basins of the Gulf of Mexico. IODP Expedition 308 has cored and logged complete pre-fan and fan sequences that are clearly distinguished with high-resolution seismic profiles at Brazos Trinity Basin IV at Sites U1319, U1320 and U1321. Seismically imaged pre-fan and fan units also can be distinguished and correlated with the sedimentological and logging data. Turbidite facies display distinct properties in terms of grain size, bed thickness, color, organic matter content, vertical organization of beds and lateral distribution in all the units of the fan through the basin. The pre-fan sequence is composed of terrigenous laminated clay with color banding and it is interpreted to result from deposition from fluvial plumes and/or muddy turbidity currents overspilling from basins upstream of Basin IV. The lower fan is characterized by laminated and bioturbated muds with thin beds of silt and sand, and represent the initial infill of the basin by mostly muddy turbidity currents, although an exceptionally sand-rich unit occurs at the base of the lower fan. The middle and upper fan represent the main pulses of turbidity current influx into Basin IV, and contain fine to medium sand turbidite beds organized in packets ranging in thickness from 5 to 25 m. The middle fan displays an overall upward increase in sand content at Site U1320, suggesting increased flow by-pass from the updip basins through time. Key examples of turbidites from each fan unit are analysed in detail to infer the depositional processes and infilling history of Brazos-Trinity Basin IV. The study of turbidites in a calibrated basin such as Basin IV provides ground truth for the sedimentological processes and resultant seismic facies, which can be used to interpret the infill history of other intraslope basins with similar seismic facies in the Gulf of Mexico where well calibration is not available.

Sedimentation in a Submarine Seamount Apron at Site U1431, International Ocean Discovery Program Expedition 349, South China Sea

NASA Astrophysics Data System (ADS)

Dadd, K. A.; Clift, P. D.; Hyun, S.; Jiang, T.; Liu, Z.

2014-12-01

International Ocean Discovery Program (IODP) Expedition 349 Site U1431 is located near the relict spreading ridge in the East Subbasin of the South China Sea. Holes at this site were drilled close to seamounts and intersected the volcaniclastic apron. Volcaniclastic breccia and sandstone at Site U1431 are dated as late middle Miocene to early late Miocene (~8-13 Ma), suggesting a 5 m.y. duration of seamount volcanism. The apron is approximately 200 m thick and is sandwiched between non-volcaniclastic units that represent the background sedimentation. These comprise dark greenish gray clay, silt, and nannofossil ooze interpreted as turbidite and hemipelagic deposits that accumulated at abyssal water depths. At its base, the seamount sequence begins with dark greenish gray sandstone, siltstone, and claystone in upward fining sequences interpreted as turbidites intercalated with minor intervals of volcaniclastic breccia. Upsection the number and thickness of breccia layers increases with some beds up to 4.8 m and possibly 14.5 m thick. The breccia is typically massive, ungraded, and poorly sorted with angular to subangular basaltic clasts, as well as minor reworked subrounded calcareous mudstone, mudstone, and sandstone clasts. Basaltic clasts include nonvesicular aphyric basalt, sparsely vesicular aphyric basalt, highly vesicular aphyric basalt, and nonvesicular glassy basalt. Mudstone clasts are clay rich and contain foraminifer fossils. The matrix comprises up to 40% of the breccia beds and is a mix of clay, finer grained altered basalt clasts, and mafic vitroclasts with rare foraminifer fossils. Some layers have calcite cement between clasts. Volcaniclastic sandstone and claystone cycles interbedded with the breccia layers have current ripples and parallel laminations indicative of high-energy flow conditions during sedimentation. The breccia beds were most likely deposited as a series of debris flows or grain flows. This interpretation is supported by their massive structure, poor sorting, and reverse-graded bases. The upper part of the apron grades back into the background clay, silt and nannofossil ooze sedimentation with minor volcaniclastic sand and silt.

Age-of-Air, Tape Recorder, and Vertical Transport Schemes

NASA Technical Reports Server (NTRS)

Lin, S.-J.; Einaudi, Franco (Technical Monitor)

2000-01-01

A numerical-analytic investigation of the impacts of vertical transport schemes on the model simulated age-of-air and the so-called 'tape recorder' will be presented using an idealized 1-D column transport model as well as a more realistic 3-D dynamical model. By comparing to the 'exact' solutions of 'age-of-air' and the 'tape recorder' obtainable in the 1-D setting, useful insight is gained on the impacts of numerical diffusion and dispersion of numerical schemes used in global models. Advantages and disadvantages of Eulerian, semi-Lagrangian, and Lagrangian transport schemes will be discussed. Vertical resolution requirement for numerical schemes as well as observing systems for capturing the fine details of the 'tape recorder' or any upward propagating wave-like structures can potentially be derived from the 1-D analytic model.

Ferroelectric Polarization-Modulated Interfacial Fine Structures Involving Two-Dimensional Electron Gases in Pb(Zr,Ti)O3/LaAlO3/SrTiO3 Heterostructures.

PubMed

Wang, Shuangbao; Bai, Yuhang; Xie, Lin; Li, Chen; Key, Julian D; Wu, Di; Wang, Peng; Pan, Xiaoqing

2018-01-10

Interfacial fine structures of bare LaAlO 3 /SrTiO 3 (LAO/STO) heterostructures are compared with those of LAO/STO heterostructures capped with upward-polarized Pb(Zr 0.1 ,Ti 0.9 )O 3 (PZT up ) or downward-polarized Pb(Zr 0.5 ,Ti 0.5 )O 3 (PZT down ) overlayers by aberration-corrected scanning transmission electron microscopy experiments. By combining the acquired electron energy-loss spectroscopy mapping, we are able to directly observe electron transfer from Ti 4+ to Ti 3+ and ionic displacements at the interface of bare LAO/STO and PZT down /LAO/STO heterostructure unit cell by unit cell. No evidence of Ti 3+ is observed at the interface of the PZT up /LAO/STO samples. Furthermore, the confinement of the two-dimensional electron gas (2DEG) at the interface is determined by atomic-column spatial resolution. Compared with the bare LAO/STO interface, the 2DEG density at the LAO/STO interface is enhanced or depressed by the PZT down or PZT up overlayer, respectively. Our microscopy studies shed light on the mechanism of ferroelectric modulation of interfacial transport at polar/nonpolar oxide heterointerfaces, which may facilitate applications of these materials as nonvolatile memory.

Paleomagnetism of ~635 Ma "Elatina Rhythmites," Reconsidered

NASA Astrophysics Data System (ADS)

Raub, T. D.; Raub, T. M.

2007-12-01

Extraordinary laminated sand-siltstone of South Australia's synglacial/deglacial Elatina Formation-equivalent at Pichi Richi Pass is an iconic outcrop for paleomagnetists, paleoclimatologists, and astrophysicists. Cyclic- bedded stacks of coarse/fine-grained doublets have been interpreted as rhythmites of semi-diurnal tidal origin in a deep-water delta front environment. Cycle analysis has yielded estimates of Earth's paleorotation and revolution periods and lunar distance. The reported 10 m (interpreted 60 year) record disagrees somewhat with coeval and younger biological "sediment-clocks," and Williams (2000) argues that the sedimentological context and extraordinary preservation of Elatina rhythmites makes that record preferable. A paleomagnetic "synsedimentary fold" test on <8 cm amplitude antiforms from the Pichi Richi Pass rhythmites confirmed low-latitude Neoproterozoic glaciation (Sumner et al., 1987) and inspired the formal "Snowball Earth" hypothesis (Kirschvink, 1989). Repeated study of the Elatina rhythmites (Schmidt and Williams, 1995 and citations therein) has documented NRM essentially equal to ChRM carried by detrital hematite, "locked-in" synchronously with "deformation" of "antiforms" (i.e., within hours to days of deposition). "Synfolding" remanence has been ascribed to superposition of slump-shear and DRM. Anomalously shallow inclination of rhythmites (Sohl et al., 1999) could represent inadequate averaging of ca. 635 Ma geomagnetic secular variation. New measurement of ten stratigraphic sections through rhythmite-bearing facies outside of Pichi Richi Pass supports a distributary environment since rhythmites are expressed in multiple lithologies closely beneath ultimate deglacial, Nuccaleena cap dolostone. At Pichi Richi Pass, a full section of rhythmites approx. 18 meters thick is now documented, supporting a novel magnetostratigraphic collection of 130 samples. It is necessary to re-examine the DRM interpretation of Elatina rhythmite magnetization, however, in light of new observations: The structures previously considered "slump folds" are in fact sedimentary ripple crests. At Pichi Richi Pass, rhythmite facies grade upward from undisturbed, planar lamination into disorganized dunes, then low- wavelength, low-amplitude, linear-crested ripples, increasing steadily in wavelength and amplitude and climbing upward in >50 cm packages to culminate in unambiguous ladderback ripples. This shallowing-upward sequence reflects high sediment supply over 60 years and/or else significant sea level regression during (possibly longer) rhythmite deposition. The exceptional character of climbing-ripple rhythmites can be explained by pervasive microbial binding of sediment, in the anomalous mode characterizing many Ediacaran siliciclastic environments. Detrital magnetization seemingly should not around ripple crests. Either the interval of Snowball Earth deglaciation was characterized by unusually low geomagnetic field strength, biasing magnetization fidelity, or else Elatina rhythmites do not record DRM over a continuous 60-year timescale. This latter alternative may find support in the original studies, which document considerable dispersion, unexpected for a VGP. Kirschvink, 1992. in Schopf, J.W. and Klein, C., eds. The Proterozoic Biosphere, Cambridge University Press, Cambridge, pp. 51-52. Schmidt and Williams, 1995. Earth and Planetary Science Letters, v. 134, pp. 107-124. Sohl, Christie-Blick, and Kent, 1999. Geological Society of America Bulletin, v. 111, pp. 1120-1139. Sumner, Kirschvink, and Runnegar, 1987. EOS, v. 68, pg. 1251. Williams, 2000. Reviews of Geophysics, v. 38, pp. 37-59.

To What Extent Can Motor Imagery Replace Motor Execution While Learning a Fine Motor Skill?

PubMed Central

Sobierajewicz, Jagna; Szarkiewicz, Sylwia; Przekoracka-Krawczyk, Anna; Jaśkowski, Wojciech; van der Lubbe, Rob

2016-01-01

Motor imagery is generally thought to share common mechanisms with motor execution. In the present study, we examined to what extent learning a fine motor skill by motor imagery may substitute physical practice. Learning effects were assessed by manipulating the proportion of motor execution and motor imagery trials. Additionally, learning effects were compared between participants with an explicit motor imagery instruction and a control group. A Go/NoGo discrete sequence production (DSP) task was employed, wherein a five-stimulus sequence presented on each trial indicated the required sequence of finger movements after a Go signal. In the case of a NoGo signal, participants either had to imagine carrying out the response sequence (the motor imagery group), or the response sequence had to be withheld (the control group). Two practice days were followed by a final test day on which all sequences had to be executed. Learning effects were assessed by computing response times (RTs) and the percentages of correct responses (PCs). The electroencephalogram (EEG ) was additionally measured on this test day to examine whether motor preparation and the involvement of visual short term memory (VST M) depended on the amount of physical/mental practice. Accuracy data indicated strong learning effects. However, a substantial amount of physical practice was required to reach an optimal speed. EEG results suggest the involvement of VST M for sequences that had less or no physical practice in both groups. The absence of differences between the motor imagery and the control group underlines the possibility that motor preparation may actually resemble motor imagery. PMID:28154614

To What Extent Can Motor Imagery Replace Motor Execution While Learning a Fine Motor Skill?

PubMed

Sobierajewicz, Jagna; Szarkiewicz, Sylwia; Przekoracka-Krawczyk, Anna; Jaśkowski, Wojciech; van der Lubbe, Rob

2016-01-01

Motor imagery is generally thought to share common mechanisms with motor execution. In the present study, we examined to what extent learning a fine motor skill by motor imagery may substitute physical practice. Learning effects were assessed by manipulating the proportion of motor execution and motor imagery trials. Additionally, learning effects were compared between participants with an explicit motor imagery instruction and a control group. A Go/NoGo discrete sequence production (DSP) task was employed, wherein a five-stimulus sequence presented on each trial indicated the required sequence of finger movements after a Go signal. In the case of a NoGo signal, participants either had to imagine carrying out the response sequence (the motor imagery group), or the response sequence had to be withheld (the control group). Two practice days were followed by a final test day on which all sequences had to be executed. Learning effects were assessed by computing response times (RTs) and the percentages of correct responses (PCs). The electroencephalogram (EEG ) was additionally measured on this test day to examine whether motor preparation and the involvement of visual short term memory (VST M) depended on the amount of physical/mental practice. Accuracy data indicated strong learning effects. However, a substantial amount of physical practice was required to reach an optimal speed. EEG results suggest the involvement of VST M for sequences that had less or no physical practice in both groups. The absence of differences between the motor imagery and the control group underlines the possibility that motor preparation may actually resemble motor imagery.

34 CFR 645.32 - How does the Secretary evaluate prior experience?

Code of Federal Regulations, 2011 CFR

2011-07-01

... Upward Bound and Upward Bound Math and Science Centers PE criteria in paragraph (e)(1)(ii) of this...) Regular Upward Bound and Upward Bound Math and Science Centers. (i) (3 points) Number of participants...

34 CFR 645.32 - How does the Secretary evaluate prior experience?

Code of Federal Regulations, 2013 CFR

2013-07-01

... Upward Bound and Upward Bound Math and Science Centers PE criteria in paragraph (e)(1)(ii) of this...) Regular Upward Bound and Upward Bound Math and Science Centers. (i) (3 points) Number of participants...

34 CFR 645.32 - How does the Secretary evaluate prior experience?

Code of Federal Regulations, 2014 CFR

2014-07-01

... Upward Bound and Upward Bound Math and Science Centers PE criteria in paragraph (e)(1)(ii) of this...) Regular Upward Bound and Upward Bound Math and Science Centers. (i) (3 points) Number of participants...

34 CFR 645.32 - How does the Secretary evaluate prior experience?

Code of Federal Regulations, 2012 CFR

2012-07-01

... Upward Bound and Upward Bound Math and Science Centers PE criteria in paragraph (e)(1)(ii) of this...) Regular Upward Bound and Upward Bound Math and Science Centers. (i) (3 points) Number of participants...

Prospective Optimization with Limited Resources

PubMed Central

Snider, Joseph; Lee, Dongpyo; Poizner, Howard; Gepshtein, Sergei

2015-01-01

The future is uncertain because some forthcoming events are unpredictable and also because our ability to foresee the myriad consequences of our own actions is limited. Here we studied how humans select actions under such extrinsic and intrinsic uncertainty, in view of an exponentially expanding number of prospects on a branching multivalued visual stimulus. A triangular grid of disks of different sizes scrolled down a touchscreen at a variable speed. The larger disks represented larger rewards. The task was to maximize the cumulative reward by touching one disk at a time in a rapid sequence, forming an upward path across the grid, while every step along the path constrained the part of the grid accessible in the future. This task captured some of the complexity of natural behavior in the risky and dynamic world, where ongoing decisions alter the landscape of future rewards. By comparing human behavior with behavior of ideal actors, we identified the strategies used by humans in terms of how far into the future they looked (their “depth of computation”) and how often they attempted to incorporate new information about the future rewards (their “recalculation period”). We found that, for a given task difficulty, humans traded off their depth of computation for the recalculation period. The form of this tradeoff was consistent with a complete, brute-force exploration of all possible paths up to a resource-limited finite depth. A step-by-step analysis of the human behavior revealed that participants took into account very fine distinctions between the future rewards and that they abstained from some simple heuristics in assessment of the alternative paths, such as seeking only the largest disks or avoiding the smaller disks. The participants preferred to reduce their depth of computation or increase the recalculation period rather than sacrifice the precision of computation. PMID:26367309

Direct-push geochemical profiling for assessment of inorganic chemical heterogeneity in aquifers

USGS Publications Warehouse

Schulmeister, M.K.; Healey, J.M.; Butler, J.J.; McCall, G.W.

2004-01-01

Discrete-depth sampling of inorganic groundwater chemistry is essential for a variety of site characterization activities. Although the mobility and rapid sampling capabilities of direct-push techniques have led to their widespread use for evaluating the distribution of organic contaminants, complementary methods for the characterization of spatial variations in geochemical conditions have not been developed. In this study, a direct-push-based approach for high-resolution inorganic chemical profiling was developed at a site where sharp chemical contrasts and iron-reducing conditions had previously been observed. Existing multilevel samplers (MLSs) that span a fining-upward alluvial sequence were used for comparison with the direct-push profiling. Chemical profiles obtained with a conventional direct-push exposed-screen sampler differed from those obtained with an adjacent MLS because of sampler reactivity and mixing with water from previous sampling levels. The sampler was modified by replacing steel sampling components with stainless-steel and heat-treated parts, and adding an adapter that prevents mixing. Profiles obtained with the modified approach were in excellent agreement with those obtained from an adjacent MLS for all constituents and parameters monitored (Cl, NO3, Fe, Mn, DO, ORP, specific conductance and pH). Interpretations of site redox conditions based on field-measured parameters were supported by laboratory analysis of dissolved Fe. The discrete-depth capability of this approach allows inorganic chemical variations to be described at a level of detail that has rarely been possible. When combined with the mobility afforded by direct-push rigs and on-site methods of chemical analysis, the new approach is well suited for a variety of interactive site-characterization endeavors. ?? 2003 Elsevier B.V. All rights reserved.

An historical assessment of trace metal accumulation in Lake Champlain, Vermont

DOE Office of Scientific and Technical Information (OSTI.GOV)

Mecray, E.L.; King, J.W.

1993-03-01

The Lake Champlain watershed, with its increased land use, shoreline development, and population, is being threatened by pollutants in the water column and bottom sediments. A comprehensive study is currently being conducted to characterize the bottom sediments of the lake for toxicity and to reconstruct the history of pollutant inputs. Surface sediment samples were collected from 30 stations and analyzed for metal (Cu, Zn, Cr, Pb, Ni, Mn, Fe, Cd, Al, and Ag) concentrations to determine the contaminated regions of the lake. Once the contaminated regions were determined, a Nemesis corer was used to retrieve sediments cores averaging 1 metermore » in length from 10 sites within Lake Champlain. Grain size and metal analyses were conducted at one and two cm intervals down the cores. Grain size data, in combination with metal and radiometric stratigraphy, can serve as an indicator of changing land use in the watershed. The grain size in some cores has a fining upward trend indicating increased land use and soil erosion. Downcore variations in metal concentrations reveal two different regimes. The concentration at depth remain consistently low and are inferred to correspond with the natural background levels. In contrast, the upper section of the cores show abrupt increases in metal concentrations which are attributed to increased anthropogenic inputs. Radiometric ([sup 210] and [sup 137]Cs) and pollen chronostratigraphy of these cores indicates that the increased metal concentrations and the changes in grain size recorded in the upper most sediments is related to increased human disturbance beginning in the late 18th and early 19th centuries. This study demonstrates that the historical record of pollution inputs to Lake Champlain can be reconstructed from the sediment sequences.« less

Stratigraphy of the Neogene Sahabi units in the Sirt Basin, northeast Libya

NASA Astrophysics Data System (ADS)

El-Shawaihdi, M. H.; Mozley, P. S.; Boaz, N. T.; Salloum, F.; Pavlakis, P.; Muftah, A.; Triantaphyllou, M.

2016-06-01

A revision of the nomenclature of lithostratigraphic units of Neogene strata at As Sahabi, northeast Libya, is presented, based on new fieldwork conducted during 2006-2008. The Sahabi units are correlated across the Ajdabya Sheet (NH 34-6) in northeastern Libya. Major conclusions are: (1) Miocene (Langhian through Messinian) strata are predominantly carbonate and should be referred to as formation "M"; (2) A local unconformity of Miocene (early Messinian) age overlies strata of the formation "M"; (3) This unconformity is overlain by Messinian gypsiferous sand and mud (formerly formation "P" and partially member "T"), which are designated as the "lower member" (gypsiferous) of the Sahabi Formation; (4) The "lower member" is overlain by sand and mud of late Messinian age (formerly partially member "T" and members "U1", "UD", and "U2") in a generally fining-upwards sequence, and are designated as the "upper member" (non-gypsiferous) of the Sahabi Formation; (5) The latest Miocene sand and mud of the "upper member" are capped by an unconformity that is correlated with the regression and desiccation of the Mediterranean Sea during the Messinian Salinity Crisis and with Eosahabi Channel cutting; (6) The unconformity is overlain by Pliocene medium, coarse, and pebbly sands, which are referred to as the Qarat Weddah Formation (formerly Garet Uedda Formation); (7) The Pliocene sands of Qarat Weddah Formation are overlain by carbonate soil (calcrete) of Late Pliocene age, which is referred to as formation "Z" (formerly member "Z"). The major outcome of this study is a revised stratigraphic description and nomenclature of the Sahabi units that helps to provide a formal and unified context for understanding paleontological discoveries in northeastern Libya, which will serve to facilitate a broader correlation of the Sahabi units with their equivalents elsewhere in Africa and in Europe and Asia.

High-resolution past environmental reconstruction in East Asia using annually laminated lake sediments of Lake Megata in northeastern Japan

NASA Astrophysics Data System (ADS)

Yamada, K.; Gotanda, K.; Yonenobu, H.; Shinozuka, Y.; Kitagawa, J.; Makohonienko, M.; Schwab, M.; Haraguchi, T.; Yasuda, Y.

2007-12-01

37 m-long non-glacial varved sequences were taken from Ichi-no-Megata maar in Oga Peninsula, Akita, northern part of Japan. Ichi-no-Megata maar occupies 0.25 km2 with a maximum water depth of ca. 45.1 m. The shape of lake is a kettle-type basin and the deepest bottom basin is very flat. We took core samples (named IMG06 core) at the center of the lake in November to December in 2006. In order to take completely continuous maar sediment, we drilled three holes and take every sample from each hole which apart only few meters. In this drilling campaign, we can 37 m-long continuous maar sediment except thick volcanic deposits from 26.5 to 31.7m in core. The sedimentological feature of IMG06 core is dominated by thin lamination clay/silt from most top part up to 37 m with turbidites characterized upward fining structure. The SEM image observation of lamination reveals that sponge-like lamina consists of diatom assemblage against dark colored lamina consists of mixture of detritus minerals, clay minerals, and diatom. It means sponge-like lamina deposits during spring season, and later one deposits during another three seasons, and then these thin lamination of IMG06 core could be identified as annual lamination (varves). This interpretation is supported by the correlation of historic event as earthquake and tunnel construction. In this IMG06 core, six volcanic ashes are found and we have also analyzed radiocarbon dating from 38 horizons of the core to use leaf and seeds inter-bedded varves. As the results, the IMG06 core covers from 25,000 to 4,000 14C yr BP with stable sedimentation rates (0.71mm/year).

Prospective Optimization with Limited Resources.

PubMed

Snider, Joseph; Lee, Dongpyo; Poizner, Howard; Gepshtein, Sergei

2015-09-01

The future is uncertain because some forthcoming events are unpredictable and also because our ability to foresee the myriad consequences of our own actions is limited. Here we studied how humans select actions under such extrinsic and intrinsic uncertainty, in view of an exponentially expanding number of prospects on a branching multivalued visual stimulus. A triangular grid of disks of different sizes scrolled down a touchscreen at a variable speed. The larger disks represented larger rewards. The task was to maximize the cumulative reward by touching one disk at a time in a rapid sequence, forming an upward path across the grid, while every step along the path constrained the part of the grid accessible in the future. This task captured some of the complexity of natural behavior in the risky and dynamic world, where ongoing decisions alter the landscape of future rewards. By comparing human behavior with behavior of ideal actors, we identified the strategies used by humans in terms of how far into the future they looked (their "depth of computation") and how often they attempted to incorporate new information about the future rewards (their "recalculation period"). We found that, for a given task difficulty, humans traded off their depth of computation for the recalculation period. The form of this tradeoff was consistent with a complete, brute-force exploration of all possible paths up to a resource-limited finite depth. A step-by-step analysis of the human behavior revealed that participants took into account very fine distinctions between the future rewards and that they abstained from some simple heuristics in assessment of the alternative paths, such as seeking only the largest disks or avoiding the smaller disks. The participants preferred to reduce their depth of computation or increase the recalculation period rather than sacrifice the precision of computation.

Molecular cloning of two human liver 3 alpha-hydroxysteroid/dihydrodiol dehydrogenase isoenzymes that are identical with chlordecone reductase and bile-acid binder.

PubMed Central

Deyashiki, Y; Ogasawara, A; Nakayama, T; Nakanishi, M; Miyabe, Y; Sato, K; Hara, A

1994-01-01

Human liver contains two dihydrodiol dehydrogenases, DD2 and DD4, associated with 3 alpha-hydroxysteroid dehydrogenase activity. We have raised polyclonal antibodies that cross-reacted with the two enzymes and isolated two 1.2 kb cDNA clones (C9 and C11) for the two enzymes from a human liver cDNA library using the antibodies. The clones of C9 and C11 contained coding sequences corresponding to 306 and 321 amino acid residues respectively, but lacked 5'-coding regions around the initiation codon. Sequence analyses of several peptides obtained by enzymic and chemical cleavages of the two purified enzymes verified that the C9 and C11 clones encoded DD2 and DD4 respectively, and further indicated that the sequence of DD2 had at least additional 16 residues upward from the N-terminal sequence deduced from the cDNA. There was 82% amino acid sequence identity between the two enzymes, indicating that the enzymes are genetic isoenzymes. A computer-based comparison of the cDNAs of the isoenzymes with the DNA sequence database revealed that the nucleotide and amino acid sequences of DD2 and DD4 are virtually identical with those of human bile-acid binder and human chlordecone reductase cDNAs respectively. Images Figure 1 PMID:8172617

34 CFR 645.20 - How many applications for an Upward Bound award may an eligible applicant submit?

Code of Federal Regulations, 2010 CFR

2010-07-01

... Upward Bound project, an Upward Bound Math and Science Center, or a Veterans Upward Bound project... additional application describes a project that serves a different participant population. (b) Each...

Mixed fluvial systems of Messak Sandstone, a deposit of Nubian lithofacies, southwestern Libya

DOE Office of Scientific and Technical Information (OSTI.GOV)

Lorenz, J.C.

1987-05-01

The Messak Sandstone is a coarse to pebbly, tabular cross-bedded, Lower Cretaceous deposit of the widespread Nubian lithofacies. It was deposited at the northern edge of the Murzuq basin in southwestern Libya. Although the sedimentary record is predominantly one of braided fluvial systems, a common subfacies within the formation is interpreted to record the passage of straight-crested sand waves across laterally migrating point bars in sinuous rivers, similar to the pattern documented by Singh and Kumar on the modern Ganga and Yamuna Rivers. Because the sand waves were larger on the lower parts of the point bars, lateral migration createdmore » diagnostic thinning-upward, unidirectional cosets of tabular cross-beds as well as fining-upward, grain-size trends. Common, thick, interbedded claystones, deposited in associated paludal and lacustrine environments, and high variance in cross-bed dispersion patterns also suggest the local presence of sinuous fluvial systems within the overall braided regime. The Messak Sandstone contains some of the features that led Harms et al to propose an unconventional low-sinuosity fluvial environment for the Nubian lithofacies in Egypt, and the continuously high water levels of this model may explain channel-scale clay drapes and overturned cross-beds in the Messak. However, most of the Messak characteristics are incompatible with the low-sinuosity model, suggesting instead that the fluvial channels in the Murzuq basin alternated between braided and high-sinuosity patterns.« less

Sedimentology and sequence stratigraphy of the Cretaceous Nanushuk, Seabee, and Tuluvak formations exposed on Umiat Mountain, north-central Alaska

USGS Publications Warehouse

Houseknecht, David W.; Schenk, Christopher J.

2005-01-01

Upper Cretaceous strata of the upper part of the Nanushuk Formation, the Seabee Formation, and the lower part of the Tuluvak Formation are exposed along the Colville River on the east flank of Umiat Mountain in north-central Alaska. The Ninuluk sandstone, which is the uppermost unit of the Nanushuk Formation, displays a vertical succession of facies indicative of deposition in an upward-deepening estuarine through shoreface setting. A marine-flooding surface lies between the Ninuluk sandstone and organic-rich shale of the basal part of the Seabee Formation. The Ninuluk sandstone and the lower part of the Seabee Formation are interpreted as components of a transgressive-systems tract. The lowest, well-exposed strata in the Seabee Formation are a succession of shoreface sandstone beds in the middle of the formation. Integration of outcrop information and the Umiat No. 11 well log suggests that this sandstone succession rests on a sequence boundary and is capped by a marine-flooding surface. The sandstone succession is interpreted as a lowstand-systems tract. The upper part of the Seabee Formation includes a thick interval of organic-rich shale deposited in a dysaerobic offshore environment, and the gradational Seabee-Tuluvak contact is a coarsening-upward shale-to-sandstone succession deposited in a prodelta/delta-front environment. The observation that the upper part of the Seabee Formation correlates with seismic clinoforms suggests that dysaerobic conditions extended well up onto the prodelta slope during intervals of transgression and highstand. Correlation of the Umiat Mountain outcrop section with well logs and seismic data suggests that sequence boundaries and lowstand shoreface deposits may be common in the Seabee Formation and that wave action may have been important in transporting sand to the paleoshelf margin. These conclusions may contribute to an enhanced understanding of sand distribution in prospective lowstand turbidite deposits in the subsurface of the central North Slope of Alaska.

Stratigraphy and Facies of Cretaceous Schrader Bluff and Prince Creek Formations in Colville River Bluffs, North Slope, Alaska

USGS Publications Warehouse

Flores, Romeo M.; Myers, Mark D.; Houseknecht, David W.; Stricker, Gary D.; Brizzolara, Donald W.; Ryherd, Timothy J.; Takahashi, Kenneth I.

2007-01-01

Stratigraphic and sedimentologic studies of facies of the Upper Cretaceous rocks along the Colville River Bluffs in the west-central North Slope of Alaska identified barrier shoreface deposits consisting of vertically stacked, coarsening-upward parasequences in the Schrader Bluff Formation. This vertical stack of parasequence deposits represents progradational sequences that were affected by shoaling and deepening cycles caused by fluctuations of sea level. Further, the vertical stack may have served to stabilize accumulation of voluminous coal deposits in the Prince Creek Formation, which formed braided, high-sinuosity meandering, anastomosed, and low-sinuosity meandering fluvial channels and related flood plain deposits. The erosional contact at the top of the uppermost coarsening-upward sequence, however, suggests a significant drop of base level (relative sea level) that permitted a semiregional subaerial unconformity to develop at the contact between the Schrader Bluff and Prince Creek Formations. This drop of relative sea level may have been followed by a relative sea-level rise to accommodate coal deposition directly above the unconformity. This rise was followed by a second drop of relative sea level, with formation of incised valley topography as much as 75 ft deep and an equivalent surface of a major marine erosion or mass wasting, or both, either of which can be traced from the Colville River Bluffs basinward to the subsurface in the west-central North Slope. The Prince Creek fluvial deposits represent late Campanian to late Maastrichtian depositional environments that were affected by these base level changes influenced by tectonism, basin subsidence, and sea-level fluctuations.

Subaqueous non-vesicular to poorly-vesicular shards: hydroclastic fragmentation on seamounts and summit calderas

NASA Astrophysics Data System (ADS)

Mueller, W. U.; Dingwell, D. B.; Downey, W. S.; Mastin, L. G.

2008-12-01

Recognizing pyroclastic deposits that originate directly from magmatic and phreatomagmatic explosions in a subaqueous setting is based upon sedimentary structures, such as massive, stratified, and graded beds as well as (pyro)clast size. Ideally such deposits form ordered fining-and thinning-upward sequences. Pumice, scoria, glass shards, euhedral and broken crystals, and lithic fragments are constituents that support an explosive heritage. Recent deep-sea ROV and submersible dives have retrieved non-vesicular to vesicle- poor, mm-scale, mafic shards in 5-15 cm-thick massive and/or graded (stratified) deposits, for which a subaqueous explosive origin has been inferred. These sheet hyaloclastites with variable shard shapes were first documented on Seamount 6 as deep-sea Limu O Pele at water depths > 1000 m. We identified in Seamount 6 samples equant to blocky shards with angular to subrounded terminations, but also subordinate hair-like and contorted glassy filaments, warped shards and irregular shards. Shards display internal laminations (flow-banding?) and have local perlitic fractures. Bubble wall shards derived from scoria burst were rare. In combination with all the above and a poor shard vesicularity (< 2%), a magmatic explosive origin seems improbable. Such small-volume deposits have been reported from seamounts and summit calderas associated with subaqueous drainage tubes and ponded magma in depths > 1000 m. We envision that hydrostatic pressure commensurate with water depth played a significant role. The deposits can be readily explained by a hydroclastic process whereby fragmentation occurred at the milli-second (Limu) to second scale (hyaloclastite). Hence, hyperquenched glass shards or thread-like glass filaments need not require magmatic explosivity. Constant surface interaction between aphyric, low-viscosity, high temperature, magma-lava at depth with seawater causes fragmentation (granulation) that can generate such delicate shards. The transfer of heat to the ambient medium, seawater, favours turbulent convection causing strong water movement that strips glassy rinds and lofts the fine-grained shards and Limu O Pele into the water column. Once entrained, shards are deposited after water turbulence abates. Congestion of the water column causes deposition from low-density turbidity currents and subaqueous fallout. In this manner delicate textures would remain intact even if removed from the site of hydroclastic fragmentation.

Fine spatial evolution of leaders and M-components in rocket-triggered lightning observed with a broadband interferometer

NASA Astrophysics Data System (ADS)

Chen, Mingli; Shen, Yanchi; Du, Yaping; Dong, Wansheng

2017-08-01

Based on measurements of VHF radiation sources and VLF electric fields with a broadband interferometer system, the spatial evolution of leader processes and K-breakdowns and M-components involved in a classically-triggered negative lightning discharge have been analyzed. While a normal classically-triggered negative discharge usually starts with a positive leader initiates from the tip of the ascending triggering-wire and moves upward, there was no such an initial upward positive leader (UPL) being observed for the present discharge, probably due to low resolution and sensitivity of the measurements. Instead, there was a downward negative leader (PDL) at the preliminary stage of the discharge being observed, followed by a 173-ms-long lasting M-component-wise process and two leader/return-stroke processes. The PDL was most likely a leader process along the channel trace possibly built by the undetected UPL, as its speed which ranged from 3.7 × 106 m/s to 0.3 × 106 m/s is similar to that of a dart leader in literature. The long lasting M-component-wise process consisted of a slow negative-going change stage (Ma), followed by a fast negative-going change stage (Mb) and then a slow positive-going change stage (Mc). Ma was found to be intra-cloud negative breakdowns moving towards overhead position of the PDL trace. Mb would be considered as a common M-component (channel brightening), which starts with a K breakdown in cloud (Mb1) moving horizontally towards overhead position of the previous PDL, followed by an event (Mb2) moving up from ground to cloud along PDL trace. As Mb2 reaching the cloud, more new K breakdowns (Mc) appeared in cloud around extremities of the pre-built channels by Ma and Mb. The leader preceding the first return stroke (L1) started inside the cloud and propagated downward to the triggering-wire trace, but with a different channel to that of PDL. As the leader touched the triggering wire trace, it appeared to propagate upward along the same channel of PDL. The upward portion of L1 might be interpreted as a reflection of L1 at top of the triggering-wire trace towards the PDL trace due to the difference in conductivity and potential between the PDL trace, the triggering wire trace and the L1 channel, which was optically invisible but bright in VHF. The speed of the downward portion of L1 decreased from 2.32 to 0.32 × 106 m/s as it descended, while that of the upward portion of L1 increased from 0.85 to 2.7 × 106 m/s as it ascended. The leader preceding the second return stroke (L2) behaved similarly to L1 but with higher speeds.

The case for the continuing use of the revised Cambridge Reference Sequence (rCRS) and the standardization of notation in human mitochondrial DNA studies.

PubMed

Bandelt, Hans-Jürgen; Kloss-Brandstätter, Anita; Richards, Martin B; Yao, Yong-Gang; Logan, Ian

2014-02-01

Since the determination in 1981 of the sequence of the human mitochondrial DNA (mtDNA) genome, the Cambridge Reference Sequence (CRS), has been used as the reference sequence to annotate mtDNA in molecular anthropology, forensic science and medical genetics. The CRS was eventually upgraded to the revised version (rCRS) in 1999. This reference sequence is a convenient device for recording mtDNA variation, although it has often been misunderstood as a wild-type (WT) or consensus sequence by medical geneticists. Recently, there has been a proposal to replace the rCRS with the so-called Reconstructed Sapiens Reference Sequence (RSRS). Even if it had been estimated accurately, the RSRS would be a cumbersome substitute for the rCRS, as the new proposal fuses--and thus confuses--the two distinct concepts of ancestral lineage and reference point for human mtDNA. Instead, we prefer to maintain the rCRS and to report mtDNA profiles by employing the hitherto predominant circumfix style. Tree diagrams could display mutations by using either the profile notation (in conventional short forms where appropriate) or in a root-upwards way with two suffixes indicating ancestral and derived nucleotides. This would guard against misunderstandings about reporting mtDNA variation. It is therefore neither necessary nor sensible to change the present reference sequence, the rCRS, in any way. The proposed switch to RSRS would inevitably lead to notational chaos, mistakes and misinterpretations.

Fine mapping of powdery mildew resistance genes PmTb7A.1 and PmTb7A.2 in Triticum boeoticum (Boiss.) using the shotgun sequence assembly of chromosome 7AL.

PubMed

Chhuneja, Parveen; Yadav, Bharat; Stirnweis, Daniel; Hurni, Severine; Kaur, Satinder; Elkot, Ahmed Fawzy; Keller, Beat; Wicker, Thomas; Sehgal, Sunish; Gill, Bikram S; Singh, Kuldeep

2015-10-01

A novel powdery mildew resistance gene and a new allele of Pm1 were identified and fine mapped. DNA markers suitable for marker-assisted selection have been identified. Powdery mildew caused by Blumeria graminis is one of the most important foliar diseases of wheat and causes significant yield losses worldwide. Diploid A genome species are an important genetic resource for disease resistance genes. Two powdery mildew resistance genes, identified in Triticum boeoticum (A(b)A(b)) accession pau5088, PmTb7A.1 and PmTb7A.2 were mapped on chromosome 7AL. In the present study, shotgun sequence assembly data for chromosome 7AL were utilised for fine mapping of these Pm resistance genes. Forty SSR, 73 resistance gene analogue-based sequence-tagged sites (RGA-STS) and 36 single nucleotide polymorphism markers were designed for fine mapping of PmTb7A.1 and PmTb7A.2. Twenty-one RGA-STS, 8 SSR and 13 SNP markers were mapped to 7AL. RGA-STS markers Ta7AL-4556232 and 7AL-4426363 were linked to the PmTb7A.1 and PmTb7A.2, at a genetic distance of 0.6 and 6.0 cM, respectively. The present investigation established that PmTb7A.1 is a new powdery mildew resistance gene that confers resistance to a broad range of Bgt isolates, whereas PmTb7A.2 most probably is a new allele of Pm1 based on chromosomal location and screening with Bgt isolates showing differential reaction on lines with different Pm1 alleles. The markers identified to be linked to the two Pm resistance genes are robust and can be used for marker-assisted introgression of these genes to hexaploid wheat.

Evidence of magmatic degassing in Archean komatiites: Insights from the Wannaway nickel-sulfide deposit, Western Australia

NASA Astrophysics Data System (ADS)

Caruso, Stefano; Fiorentini, Marco L.; Moroni, Marilena; Martin, Laure A. J.

2017-12-01

Magmatic degassing from komatiite lava flows potentially influenced the geochemical evolution of the Archean atmosphere and hydrosphere. We argue that the escape of SO2-rich volatiles from komatiites impacted on the mineralogical, geochemical and isotopic composition of associated nickel-sulfide mineralization leaving behind detectable and measurable footprints that can be best observed where the polarity of the magmatic sequence is clearly recognizable. Here we focus on the ore-bearing sequence of the Archean komatiite-hosted N01 nickel-sulfide orebody at Wannaway, Yilgarn Craton, Western Australia. This deposit displays a volcanic sequence with a well-defined succession of stratigraphically-correlated facies comprising a massive sulfide horizon at the base of the channelized komatiite flow, overlain by matrix and disseminated sulfide mineralization. Pyrrhotite is the dominant sulfide phase in the lower part of the ore profile. The amount of troilite gradually increases from the base of the matrix ore over several meters up-sequence, eventually becoming dominant at the expense of pyrrhotite. In the upper portion of the mineralized sequence troilite is associated with accessory Mn sulfide alabandite (MnS), which is usually reported in reduced terrestrial and extra-terrestrial environments. Such mineralogical and volcanological features are consistent with upwards decreasing in fS2 and fO2 away from the basal contact of the komatiite flow. After evaluating the possible role of metamorphism, the pyrrhotite-troilite-alabandite assemblage and the progressive up-sequence decrease of the pyrrhotite/troilite ratio across the upper part of the mineralized sequence are interpreted as magmatic and indicative of progressive loss of sulfur with concomitant establishment of reducing conditions within the sulfide melt ponding at the base of the komatiite lava. In this context, the investigation of spatially constrained sulfur isotopic signatures allows to isolate the multiple sulfur fractionation processes that impacted on sulfide mineralization and ultimately permits the identification of the isotopic shift associated with magmatic degassing. Following this approach we recognize two distinct sulfur isotope exchanges processes triggered by 1) assimilation of sulfidic shales during emplacement of the komatiite flow, and 2) equilibration between the sulfide melt and the sulfur dissolved in the silicate melt. We finally correlate the remaining δ34S depletion up-stratigraphy with the loss of heavy sulfur isotopes through magmatic degassing of SO2-rich volatiles from the ultramafic flow. The emission of SO2 upon emplacement and cooling of the magma flow would also explain the progressive reducing fO2 and fS2 conditions indicated by variations in mineral assemblages from the base of the komatiite upwards.

A combined emitter threat assessment method based on ICW-RCM

NASA Astrophysics Data System (ADS)

Zhang, Ying; Wang, Hongwei; Guo, Xiaotao; Wang, Yubing

2017-08-01

Considering that the tradition al emitter threat assessment methods are difficult to intuitively reflect the degree of target threaten and the deficiency of real-time and complexity, on the basis of radar chart method(RCM), an algorithm of emitter combined threat assessment based on ICW-RCM (improved combination weighting method, ICW) is proposed. The coarse sorting is integrated with fine sorting in emitter combined threat assessment, sequencing the emitter threat level roughly accordance to radar operation mode, and reducing task priority of the low-threat emitter; On the basis of ICW-RCM, sequencing the same radar operation mode emitter roughly, finally, obtain the results of emitter threat assessment through coarse and fine sorting. Simulation analyses show the correctness and effectiveness of this algorithm. Comparing with classical method of emitter threat assessment based on CW-RCM, the algorithm is visual in image and can work quickly with lower complexity.

Microeukaryote Community Patterns along an O2/H2S Gradient in a Supersulfidic Anoxic Fjord (Framvaren, Norway)†

PubMed Central

Behnke, Anke; Bunge, John; Barger, Kathryn; Breiner, Hans-Werner; Alla, Victoria; Stoeck, Thorsten

2006-01-01

To resolve the fine-scale architecture of anoxic protistan communities, we conducted a cultivation-independent 18S rRNA survey in the superanoxic Framvaren Fjord in Norway. We generated three clone libraries along the steep O2/H2S gradient, using the multiple-primer approach. Of 1,100 clones analyzed, 753 proved to be high-quality protistan target sequences. These sequences were grouped into 92 phylotypes, which displayed high protistan diversity in the fjord (17 major eukaryotic phyla). Only a few were closely related to known taxa. Several sequences were dissimilar to all previously described sequences and occupied a basal position in the inferred phylogenies, suggesting that the sequences recovered were derived from novel, deeply divergent eukaryotes. We detected sequence clades with evolutionary importance (for example, clades in the euglenozoa) and clades that seem to be specifically adapted to anoxic environments, challenging the hypothesis that the global dispersal of protists is uniform. Moreover, with the detection of clones affiliated with jakobid flagellates, we present evidence that primitive descendants of early eukaryotes are present in this anoxic environment. To estimate sample coverage and phylotype richness, we used parametric and nonparametric statistical methods. The results show that although our data set is one of the largest published inventories, our sample missed a substantial proportion of the protistan diversity. Nevertheless, statistical and phylogenetic analyses of the three libraries revealed the fine-scale architecture of anoxic protistan communities, which may exhibit adaptation to different environmental conditions along the O2/H2S gradient. PMID:16672511

Spatial heterogeneity in ecologically important climate variables at coarse and fine scales in a high-snow mountain landscape.

PubMed

Ford, Kevin R; Ettinger, Ailene K; Lundquist, Jessica D; Raleigh, Mark S; Hille Ris Lambers, Janneke

2013-01-01

Climate plays an important role in determining the geographic ranges of species. With rapid climate change expected in the coming decades, ecologists have predicted that species ranges will shift large distances in elevation and latitude. However, most range shift assessments are based on coarse-scale climate models that ignore fine-scale heterogeneity and could fail to capture important range shift dynamics. Moreover, if climate varies dramatically over short distances, some populations of certain species may only need to migrate tens of meters between microhabitats to track their climate as opposed to hundreds of meters upward or hundreds of kilometers poleward. To address these issues, we measured climate variables that are likely important determinants of plant species distributions and abundances (snow disappearance date and soil temperature) at coarse and fine scales at Mount Rainier National Park in Washington State, USA. Coarse-scale differences across the landscape such as large changes in elevation had expected effects on climatic variables, with later snow disappearance dates and lower temperatures at higher elevations. However, locations separated by small distances (∼20 m), but differing by vegetation structure or topographic position, often experienced differences in snow disappearance date and soil temperature as great as locations separated by large distances (>1 km). Tree canopy gaps and topographic depressions experienced later snow disappearance dates than corresponding locations under intact canopy and on ridges. Additionally, locations under vegetation and on topographic ridges experienced lower maximum and higher minimum soil temperatures. The large differences in climate we observed over small distances will likely lead to complex range shift dynamics and could buffer species from the negative effects of climate change.

Spatial Heterogeneity in Ecologically Important Climate Variables at Coarse and Fine Scales in a High-Snow Mountain Landscape

PubMed Central

Ford, Kevin R.; Ettinger, Ailene K.; Lundquist, Jessica D.; Raleigh, Mark S.; Hille Ris Lambers, Janneke

2013-01-01

Climate plays an important role in determining the geographic ranges of species. With rapid climate change expected in the coming decades, ecologists have predicted that species ranges will shift large distances in elevation and latitude. However, most range shift assessments are based on coarse-scale climate models that ignore fine-scale heterogeneity and could fail to capture important range shift dynamics. Moreover, if climate varies dramatically over short distances, some populations of certain species may only need to migrate tens of meters between microhabitats to track their climate as opposed to hundreds of meters upward or hundreds of kilometers poleward. To address these issues, we measured climate variables that are likely important determinants of plant species distributions and abundances (snow disappearance date and soil temperature) at coarse and fine scales at Mount Rainier National Park in Washington State, USA. Coarse-scale differences across the landscape such as large changes in elevation had expected effects on climatic variables, with later snow disappearance dates and lower temperatures at higher elevations. However, locations separated by small distances (∼20 m), but differing by vegetation structure or topographic position, often experienced differences in snow disappearance date and soil temperature as great as locations separated by large distances (>1 km). Tree canopy gaps and topographic depressions experienced later snow disappearance dates than corresponding locations under intact canopy and on ridges. Additionally, locations under vegetation and on topographic ridges experienced lower maximum and higher minimum soil temperatures. The large differences in climate we observed over small distances will likely lead to complex range shift dynamics and could buffer species from the negative effects of climate change. PMID:23762277

Stratigraphic, sedimentologic, and dendrogeomorphic analyses of rapid floodplain formation along the Rio Grande in Big Bend National Park, Texas

USGS Publications Warehouse

Dean, D.J.; Scott, M.L.; Shafroth, P.B.; Schmidt, J.C.

2011-01-01

The channel of the lower Rio Grande in the Big Bend region rapidly narrows during years of low mean and peak flow. We conducted stratigraphic, sedimentologic, and dendrogeomorphic analyses within two long floodplain trenches to precisely reconstruct the timing and processes of recent floodplain formation. We show that the channel of the Rio Grande narrowed through the oblique and vertical accretion of inset floodplains following channel-widening floods in 1978 and 1990-1991. Vertical accretion occurred at high rates, ranging from 16 to 35 cm/yr. Dendrogeomorphic analyses show that the onset of channel narrowing occurred during low-flow years when channel bars obliquely and vertically accreted fine sediment. This initial stage of accretion occurred by both bedload and suspended-load deposition within the active channel. Vegetation became established on top of these fine-grained deposits during years of low peak flow and stabilized these developing surfaces. Subsequent deposition by moderate floods (between 1.5 and 7 yr recurrence intervals) caused additional accretion at rapid rates. Suspended-sediment deposition was dominant in the upper deposits, resulting in the formation of natural levees at the channel margins and the deposition of horizontally bedded, fining-upward deposits in the floodplain trough. Overall, channel narrowing and floodplain formation occurred through an evolution from active-channel to floodplain depositional processes. High-resolution dendrogeomorphic analyses provide the ability to specifically correlate the flow record to the onset of narrowing, the establishment of riparian vegetation, the formation of natural levees, and ultimately, the conversion of portions of the active channel to floodplains. ?? 2011 Geological Society of America.

High-speed plasma imaging: A lightning bolt

DOE Office of Scientific and Technical Information (OSTI.GOV)

Wurden, G.A.; Whiteson, D.O.

Using a gated intensified digital Kodak Ektapro camera system, the authors captured a lightning bolt at 1,000 frames per second, with 100-{micro}s exposure time on each consecutive frame. As a thunder storm approaches while darkness descended (7:50 pm) on July 21, 1994, they photographed lightning bolts with an f22 105-mm lens and 100% gain on the intensified camera. This 15-frame sequence shows a cloud to ground stroke at a distance of about 1.5 km, which has a series of stepped leaders propagating downwards, following by the upward-propagating main return stroke.

Carbonate-shelf depositional environments of the Ordovician Viola formation in South-Central Kansas

USGS Publications Warehouse

Newell, K.D.

2000-01-01

The Upper Ordovician Viola Formation, an important petroleum reservoir in the Midcontinent, is a carbonate unit present over much of the subsurface in Kansas. The Viola is composed of two fining-upward sedimentary packages that are separated from each other by a minor karstic surface representing a brief period of exposure. Each package represents a third-order sedimentary cycle and consists of an echinoderm-rich packstone overlain by a thicker lime mudstone. The echinoderm-rich packstone was deposited nearshore in agitated waters, but subsequently was bioturbated. The overlying lime mudstone was deposited in deeper, quiet waters, and locally contains storm-deposited carbonate sands. Subtle growth of the Central Kansas Arch and Pratt Anticline (structures transecting the depositional shelf) is indicated by packstones and grainstones being thicker over these arches, whereas finer grained lithologies dominate in basinal areas on the arch flanks. Structureless lime mudstones, probably intensely bioturbated, grade into laminated lime mudstones farther basinward.

Deep Sea Drilling Project Site 612 bolide event: New evidence of a late Eocene impact-wave deposit and a possible impact site, US east coast

USGS Publications Warehouse

Wei, W.; Poag, C. Wylie; Poppe, Lawrence J.; Folger, David W.; Powars, David S.; Mixon, Robert B.; Edwards, Lucy E.; Bruce, Scott

1992-01-01

A remarkable >60-m-thick, upward-fining, polymictic, marine boulder bed is distributed over >15 000 km2 beneath Chesapeake Bay and the surrounding Middle Atlantic Coastal Plain and inner continental shelf. The wide varieties of clast lithologies and microfossil assemblages were derived from at least seven known Cretaceous, Paleocene, and Eocene stratigraphic units. The supporting pebbly matrix contains variably mixed assemblages of microfossils along with trace quantities of impact ejecta. The youngest microfossils in the boulder bed are of early-late Eocene age. On the basis of its unusual characteristics and its stratigraphic equivalent to a layer of impact ejecta at Deep Sea Drilling Project (DSDP) Site 612. It is postulated that this boulder bed was formed by a powerful bolide-generated wave train that scoured the ancient inner shelf and coastal plain of southeastern Virginia. 

Jet atomization and cavitation induced by interactions between focused ultrasound and a water surfacea)

NASA Astrophysics Data System (ADS)

Tomita, Y.

2014-09-01

Atomization of a jet produced by the interaction of 1 MHz focused ultrasound with a water surface was investigated using high-speed photography. Viewing various aspects of jet behavior, threshold conditions were obtained necessary for water surface elevation and jet breakup, including drop separation and spray formation. In addition, the position of drop atomization, where a single drop separates from the tip of a jet without spraying, showed good correlation with the jet Weber number. For a set of specified conditions, multiple beaded water masses were formed, moving upwards to produce a vigorous jet. Cavitation phenomena occurred near the center of the primary drop-shaped water mass produced at the leading part of the jet; this was accompanied by fine droplets at the neck between the primary and secondary drop-shaped water masses, due to the collapse of capillary waves.

78 FR 54459 - Agency Information Collection Activities; Submission to the Office of Management and Budget for...

Federal Register 2010, 2011, 2012, 2013, 2014

2013-09-04

... Upward Bound Math Science Annual Performance Report AGENCY: Office of Postsecondary Education (OPE... Upward Bound Math Science Annual Performance Report. OMB Control Number: 1840-NEW. Type of Review: New... Upward Bound (UB) and Upward Bound Math and Science (UBMS) Programs. The Department is requesting a new...

Privacy Impact Assessment for the TRIO Programs Annual Performance Report (APR) System

ERIC Educational Resources Information Center

US Department of Education, 2008

2008-01-01

The TRIO Programs Annual Performance Report (APR) System collects individual student records on individuals served by the following Federal TRIO Programs: Upward Bound (which includes regular Upward Bound (UB), Upward Bound Math-Science (UBMS), and Veterans Upward Bound (VUB)); Student Support Services (SSS); and the Ronald E. McNair Post…

How Upward Moral Comparison Influences Prosocial Behavioral Intention: Examining the Mediating Role of Guilt and the Moderating Role of Moral Identity.

PubMed

Zhang, Heyun; Chen, Sisi; Wang, Rong; Jiang, Jiang; Xu, Yan; Zhao, Huanhuan

2017-01-01

Although it has been shown that exceptional good deeds exert influences on people's prosocial behavior and intention, we have known little about how common moral actions in our daily life. The present study aimed to examine how upward moral comparison influenced prosocial behavioral intention as well as to explore the mediating role of guilt and the moderating role of moral identity in the focal relationship. An experimental study was conducted with 162 Chinese undergraduates (103 women, 59 men) randomly assigned to an upward moral comparison condition, an upward competence comparison condition or a control condition. Results indicated that participants in the upward moral comparison condition experienced higher levels of guilt and exhibited stronger motivation to act prosocially, relative to participants in the other two conditions. That is to say, upward moral comparison induces guilty experience, and then increases people's prosocial behavioral intention. Moreover, we have found that moral identity internalization moderates the upward moral comparison-guilt relationship, and the indirect effect of upward moral comparison on prosocial behavioral intention via guilt. The implications of these findings were discussed.

Dual-Polarization Radar Observations of Upward Lightning-Producing Storms

NASA Astrophysics Data System (ADS)

Lueck, R.; Helsdon, J. H.; Warner, T.

2013-12-01

The Upward Lightning Triggering Study (UPLIGHTS) seeks to determine how upward lightning, which originates from the tips of tall objects, is triggered by nearby flash activity. As a component of this study we analyze standard and dual-polarization weather radar data. The Correlation Coefficient (CC) in particular can be used to identify and quantify the melting layer associated with storms that produce upward lightning. It has been proposed that positive charge generation due to aggregate shedding at the melting layer results in a positive charge region just above the cloud base. This positive charge region may serve as a positive potential well favorable for negative leader propagation, which initiate upward positive leaders from tall objects. We characterize the horizontal coverage, thickness and height of the melting layer in addition to cloud base heights when upward lightning occurs to determine trends and possible threshold criteria relating to upward lightning production. Furthermore, we characterize storm type and morphology using relevant schemes as well as precipitation type using the Hydrometer Classification Algorithm (HCA) for upward lightning-producing storms. Ice-phase hydrometeors have been shown to be a significant factor in thunderstorm electrification. Only a small fraction of storms produce upward lightning, so null cases will be examined and compared as well.

DNA Barcoding Reveals Hidden Diversity of Sand Flies (Diptera: Psychodidae) at Fine and Broad Spatial Scales in Brazilian Endemic Regions for Leishmaniasis.

PubMed

Rodrigues, Bruno Leite; Carvalho-Costa, Luís Fernando; Pinto, Israel de Souza; Rebêlo, José Manuel Macário

2018-03-17

Sand fly (Diptera: Psychodidae) taxonomy is complex and time-consuming, which hampers epidemiological efforts directed toward controlling leishmaniasis in endemic regions such as northeastern Brazil. Here, we used a fragment of the mitochondrial cytochrome c oxidase I (COI) gene to identify sand fly species in Maranhão State (northeastern Brazil) and to assess cryptic diversity occurring at different spatial scales. For this, we obtained 148 COI sequences of 15 sand fly species (10 genera) from Maranhão (fine spatial scale), and joined them to COI sequences from other Brazilian localities (distant about 2,000 km from Maranhão, broad spatial scale) available in GenBank. We revealed cases of cryptic diversity in sand flies both at fine (Lutzomyia longipalpis (Lutz and Neiva) and Evandromyia termitophila (Martins, Falcão and Silva)) and broad spatial scales (Migonemyia migonei (França), Pressatia choti (Floch and Abonnenc), Psychodopygus davisi (Root), Sciopemyia sordellii (Shannon and Del Ponte), and Bichromomyia flaviscutellata (Mangabeira)). We argue that in the case of Bi. flaviscutellata, the cryptic diversity is associated with a putative new species. Cases in which DNA taxonomy was not as effective as morphological identification possibly involved recent speciation and/or introgressive hybridization, highlighting the need for integrative approaches to identify some sand fly species. Finally, we provide the first barcode sequences for four species (Brumptomyia avellari (Costa Lima), Evandromyia infraspinosa (Mangabeira), Evandromyia evandroi (Costa Lima and Antunes), and Psychodopygus complexus (Mangabeira)), which will be useful for further molecular identification of neotropical species.

R-matrix calculations for electron-impact excitation of C(+), N(2+), and O(3+) including fine structure

NASA Technical Reports Server (NTRS)

Luo, D.; Pradhan, A. K.

1990-01-01

The new R-matrix package for comprehensive close-coupling calculations for electron scattering with the first three ions in the boron isoelectronic sequence, the astrophysically significant C(+), N(2+), and O(3+), is presented. The collision strengths are calculated in the LS coupling approximation, as well as in pair-coupling scheme, for the transitions among the fine-structure sublevels. Calculations are carried out at a large number of energies in order to study the detailed effects of autoionizing resonances.

Diffusion and emissions of 1,3-dichloro propene in Florida sandy soil in microplots affected by soil moisture, organic matter, and plastic film.

PubMed

Thomas, John E; Allen, L Hartwell; McCormack, Leslie A; Vu, Joseph C; Dickson, Donald W; Ou, Li-Tse

2004-04-01

The main objective of this study was to determine the influence of soil moisture, organic matter amendment and plastic cover (a virtually impermeable film, VIF) on diffusion and emissions of (Z)- and (E)-1,3-dichloropropene (1,3-D) in microplots of Florida sandy soil (Arredondo fine sand). Upward diffusion of the two isomers in the Arredondo soil without a plastic cover was greatly influenced by soil-water content and (Z)-1,3-D diffused faster than (E)-1,3-D. In less than 5 h after 1,3-D injection to 30 cm depth, (Z)- and (E)-1,3-D in air dry soil had diffused to a 10 cm depth, whereas diffusion for the two isomers was negligible in near-water-saturated soil, even 101 h after injection. The diffusion rate of (Z)- and (E)-1,3-D in near-field-capacity soil was between the rates in the two water regimes. Yard waste compost (YWC) amendment greatly reduced diffusion of (Z)- and (E)-1,3-D, even in air-dry soil. Although upward diffusion of (Z)- and (E)-1,3-D in soil with VIF cover was slightly less than in the corresponding bare soil; the cover promoted retention of vapors of the two isomers in soil pore air in the shallow subsurface. More (Z)-1,3-D vapor was found initially in soil pore air than (E)-1,3-D although the difference declined thereafter. As a result of rapid upward movement in air-dry bare soil, (Z)- and (E)-1,3-D were rapidly volatilized into the atmosphere, but emissions from the near-water-saturated soil were minimal. Virtually impermeable film and YWC amendment retarded emissions. This study indicated that adequate soil water in this sandy soil is needed to prevent rapid emissions, but excess soil water slows diffusion of (Z)- and (E)-1,3-D. Thus, management for optimum water in soil is critical for pesticidal efficacy and the environment.

Fine-Mapping and Analysis of Cgl1, a Gene Conferring Glossy Trait in Cabbage (Brassica oleracea L. var. capitata)

PubMed Central

Liu, Zezhou; Fang, Zhiyuan; Zhuang, Mu; Zhang, Yangyong; Lv, Honghao; Liu, Yumei; Li, Zhansheng; Sun, Peitian; Tang, Jun; Liu, Dongming; Zhang, Zhenxian; Yang, Limei

2017-01-01

Cuticular waxes covering the outer plant surface impart a whitish appearance. Wax-less cabbage mutant shows glossy in leaf surface and plays important roles in riching cabbage germplasm resources and breeding brilliant green cabbage. This is the first report describing the characterization and fine-mapping of a wax biosynthesis gene using a novel glossy Brassica oleracea mutant. In the present paper, we identified a glossy cabbage mutant (line10Q-961) with a brilliant green phenotype. Genetic analyses indicated that the glossy trait was controlled by a single recessive gene. Preliminary mapping results using an F2 population containing 189 recessive individuals revealed that the Cgl1 gene was located at the end of chromosome C08. Several new markers closely linked to the target gene were designed according to the cabbage reference genome sequence. Another population of 1,172 recessive F2 individuals was used to fine-map the Cgl1 gene to a 188.7-kb interval between the C08SSR61 simple sequence repeat marker and the end of chromosome C08. There were 33 genes located in this region. According to gene annotation and homology analyses, the Bol018504 gene, which is a homolog of CER1 in Arabidopsis thaliana, was the most likely candidate for the Cgl1 gene. Its coding and promoter regions were sequenced, which indicated that the RNA splice site was altered because of a 2,722-bp insertion in the first intron of Bol018504 in the glossy mutant. Based on the FGENESH 2.6 prediction and sequence alignments, the PLN02869 domain, which controls fatty aldehyde decarbonylase activity, was absent from the Bol018504 gene of the 10Q-961 glossy mutant. We inferred that the inserted sequence in Bol018504 may result in the glossy cabbage mutant. This study represents the first step toward the characterization of cuticular wax biosynthesis in B. oleracea, and may contribute to the breeding of new cabbage varieties exhibiting a brilliant green phenotype. PMID:28265282

Integrated circuit layer image segmentation

NASA Astrophysics Data System (ADS)

Masalskis, Giedrius; Petrauskas, Romas

2010-09-01

In this paper we present IC layer image segmentation techniques which are specifically created for precise metal layer feature extraction. During our research we used many samples of real-life de-processed IC metal layer images which were obtained using optical light microscope. We have created sequence of various image processing filters which provides segmentation results of good enough precision for our application. Filter sequences were fine tuned to provide best possible results depending on properties of IC manufacturing process and imaging technology. Proposed IC image segmentation filter sequences were experimentally tested and compared with conventional direct segmentation algorithms.

Multistage crack seal vein and hydrothermal Ni enrichment in serpentinized ultramafic rocks (Koniambo massif, New Caledonia)

NASA Astrophysics Data System (ADS)

Cathelineau, Michel; Myagkiy, Andrey; Quesnel, Benoit; Boiron, Marie-Christine; Gautier, Pierre; Boulvais, Philippe; Ulrich, Marc; Truche, Laurent; Golfier, Fabrice; Drouillet, Maxime

2017-10-01

Sets of fractures and breccia sealed by Ni-rich silicates and quartz occur within saprock of the New Caledonian regolith developed over ultramafic rocks. The crystallization sequence in fractures is as follows: (1) serpentine stage: lizardite > polygonal serpentine > white lizardite; (2) Ni stage: Ni-Mg kerolite followed by red-brown microcrystalline quartz; and (3) supergene stages. The red-brown microcrystalline quartz corresponds to the very last stage of the Ni sequence and is inferred to have precipitated within the 50-95 °C temperature range. It constitutes also the main cement of breccia that has all the typical features of hydraulic fracturing. The whole sequence is therefore interpreted as the result of hydrothermal fluid circulation under medium to low temperature and fluctuating fluid pressure. Although frequently described as the result of a single downward redistribution of Ni and Mg leached in the upper part of the regolith under ambient temperature, the Ni silicate veins thus appear as the result of recurrent crack and seal process, corresponding to upward medium temperature fluid convection, hydraulic fracturing and subsequent fluid mixing, and mineral deposition.

Impaired perception of harmonic complexity in congenital amusia: a case study.

PubMed

Reed, Catherine L; Cahn, Steven J; Cory, Christopher; Szaflarski, Jerzy P

2011-07-01

This study investigates whether congenital amusia (an inability to perceive music from birth) also impairs the perception of musical qualities that do not rely on fine-grained pitch discrimination. We established that G.G. (64-year-old male, age-typical hearing) met the criteria of congenital amusia and demonstrated music-specific deficits (e.g., language processing, intonation, prosody, fine-grained pitch processing, pitch discrimination, identification of discrepant tones and direction of pitch for tones in a series, pitch discrimination within scale segments, predictability of tone sequences, recognition versus knowing memory for melodies, and short-term memory for melodies). Next, we conducted tests of tonal fusion, harmonic complexity, and affect perception: recognizing timbre, assessing consonance and dissonance, and recognizing musical affect from harmony. G.G. displayed relatively unimpaired perception and production of environmental sounds, prosody, and emotion conveyed by speech compared with impaired fine-grained pitch perception, tonal sequence discrimination, and melody recognition. Importantly, G.G. could not perform tests of tonal fusion that do not rely on pitch discrimination: He could not distinguish concurrent notes, timbre, consonance/dissonance, simultaneous notes, and musical affect. Results indicate at least three distinct problems-one with pitch discrimination, one with harmonic simultaneity, and one with musical affect-and each has distinct consequences for music perception.

How Upward Moral Comparison Influences Prosocial Behavioral Intention: Examining the Mediating Role of Guilt and the Moderating Role of Moral Identity

PubMed Central

Zhang, Heyun; Chen, Sisi; Wang, Rong; Jiang, Jiang; Xu, Yan; Zhao, Huanhuan

2017-01-01

Although it has been shown that exceptional good deeds exert influences on people's prosocial behavior and intention, we have known little about how common moral actions in our daily life. The present study aimed to examine how upward moral comparison influenced prosocial behavioral intention as well as to explore the mediating role of guilt and the moderating role of moral identity in the focal relationship. An experimental study was conducted with 162 Chinese undergraduates (103 women, 59 men) randomly assigned to an upward moral comparison condition, an upward competence comparison condition or a control condition. Results indicated that participants in the upward moral comparison condition experienced higher levels of guilt and exhibited stronger motivation to act prosocially, relative to participants in the other two conditions. That is to say, upward moral comparison induces guilty experience, and then increases people's prosocial behavioral intention. Moreover, we have found that moral identity internalization moderates the upward moral comparison-guilt relationship, and the indirect effect of upward moral comparison on prosocial behavioral intention via guilt. The implications of these findings were discussed. PMID:28959221

Water on Mars: Evidence from MER Mission Results

NASA Technical Reports Server (NTRS)

Landis, Geoffrey A.

2004-01-01

The Viking and the Mars Exploration Rover missions observed that the surface of Mars is encrusted by a thinly cemented layer, or "duricrust". Elemental analyzes at five sites on Mars show that these soils have sulfur content and chlorine content consistent with the presence of sulfates and halides as mineral cements. The soil is highly enriched in the salt-forming elements compared with rock. Analysis of the soil cementation indicates some features which may be evidence of liquid water. At both MER sites, duricrust textures revealed by the Microscopic Imager show features including the presence of fine sand-sized grains, some of which may be aggregates of fine silt and clay, surrounded by a pervasive light colored material that is associated with microtubular structures and networks of microfractures. Stereo views of undisturbed duricrust surfaces reveal rugged microrelief between 2-3 mm and minimal loose material. Comparisons of microscopic images of duricrust soils obtain before and after placement of the Mossbauer spectrometer indicate differing degrees of compaction and cementation. Two models of a transient water hypothesis are offered, a "top down" hypothesis that emphasizes the surface deposition of frost, melting and downward migration of liquid water and a "bottom up" alternative that proposes the presence of interstitial ice/brine, with the upward capillary migration of liquid water. The viability of both of these models ultimately hinges on the availability of seasonally transient liquid water for brief periods.

Development of a carbonate platform with potential for large discoveries - an example from Vietnam

DOE Office of Scientific and Technical Information (OSTI.GOV)

Mayall, M.; Bent, A.; Dale, B.

1996-01-01

In offshore central and southern Vietnam a number of carbonate accumulations can be recognized. Platform carbonates form basin-wide units of carbonate characterized by strong, continuous parallel seismic reflectors. Facies are dominated by bioclastic wackestones with poor-moderate reservoir quality. On the more isolated highs, large buildups developed. These are typically 5-10 km across and 300 m thick. They unconformably overlie the platform carbonate facies which are extensively karstified. In places these are pinnacles, typically 2-5 km across, 300 m+ thick with chaotic or mounded internal seismic facies. The large carbonate buildups are characterized by steep sided slopes with talus cones, reef-marginmore » rims usually developed around only part of the buildup, and a prominent back-stepping geometry. Buildup interior facies form the main potential reservoirs They are dominated by fine to coarse grained coralgal packstones. Fine grained carbonates are associated with deeper water events and multiple karst surfaces can also be identified. Reservoir quality is excellent, largely controlled by extensive dissolution and dolomitization believed to be related to the exposure events. Gas has been found in a number of reservoirs. Heterogeneities can be recognized which could potentially effect production. These include the extensive finer grained facies, cementation or open fissures associated with the karst surfaces, a more cemented reef rim, shallowing upwards facies cycles and faults.« less

Development of a carbonate platform with potential for large discoveries - an example from Vietnam

DOE Office of Scientific and Technical Information (OSTI.GOV)

Mayall, M.; Bent, A.; Dale, B.

1996-12-31

In offshore central and southern Vietnam a number of carbonate accumulations can be recognized. Platform carbonates form basin-wide units of carbonate characterized by strong, continuous parallel seismic reflectors. Facies are dominated by bioclastic wackestones with poor-moderate reservoir quality. On the more isolated highs, large buildups developed. These are typically 5-10 km across and 300 m thick. They unconformably overlie the platform carbonate facies which are extensively karstified. In places these are pinnacles, typically 2-5 km across, 300 m+ thick with chaotic or mounded internal seismic facies. The large carbonate buildups are characterized by steep sided slopes with talus cones, reef-marginmore » rims usually developed around only part of the buildup, and a prominent back-stepping geometry. Buildup interior facies form the main potential reservoirs They are dominated by fine to coarse grained coralgal packstones. Fine grained carbonates are associated with deeper water events and multiple karst surfaces can also be identified. Reservoir quality is excellent, largely controlled by extensive dissolution and dolomitization believed to be related to the exposure events. Gas has been found in a number of reservoirs. Heterogeneities can be recognized which could potentially effect production. These include the extensive finer grained facies, cementation or open fissures associated with the karst surfaces, a more cemented reef rim, shallowing upwards facies cycles and faults.« less

Humanoid Mobile Manipulation Using Controller Refinement

NASA Technical Reports Server (NTRS)

Platt, Robert; Burridge, Robert; Diftler, Myron; Graf, Jodi; Goza, Mike; Huber, Eric; Brock, Oliver

2006-01-01

An important class of mobile manipulation problems are move-to-grasp problems where a mobile robot must navigate to and pick up an object. One of the distinguishing features of this class of tasks is its coarse-to-fine structure. Near the beginning of the task, the robot can only sense the target object coarsely or indirectly and make gross motion toward the object. However, after the robot has located and approached the object, the robot must finely control its grasping contacts using precise visual and haptic feedback. This paper proposes that move-to-grasp problems are naturally solved by a sequence of controllers that iteratively refines what ultimately becomes the final solution. This paper introduces the notion of a refining sequence of controllers and characterizes this type of solution. The approach is demonstrated in a move-to-grasp task where Robonaut, the NASA/JSC dexterous humanoid, is mounted on a mobile base and navigates to and picks up a geological sample box. In a series of tests, it is shown that a refining sequence of controllers decreases variance in robot configuration relative to the sample box until a successful grasp has been achieved.

Humanoid Mobile Manipulation Using Controller Refinement

NASA Technical Reports Server (NTRS)

Platt, Robert; Burridge, Robert; Diftler, Myron; Graf, Jodi; Goza, Mike; Huber, Eric

2006-01-01

An important class of mobile manipulation problems are move-to-grasp problems where a mobile robot must navigate to and pick up an object. One of the distinguishing features of this class of tasks is its coarse-to-fine structure. Near the beginning of the task, the robot can only sense the target object coarsely or indirectly and make gross motion toward the object. However, after the robot has located and approached the object, the robot must finely control its grasping contacts using precise visual and haptic feedback. In this paper, it is proposed that move-to-grasp problems are naturally solved by a sequence of controllers that iteratively refines what ultimately becomes the final solution. This paper introduces the notion of a refining sequence of controllers and characterizes this type of solution. The approach is demonstrated in a move-to-grasp task where Robonaut, the NASA/JSC dexterous humanoid, is mounted on a mobile base and navigates to and picks up a geological sample box. In a series of tests, it is shown that a refining sequence of controllers decreases variance in robot configuration relative to the sample box until a successful grasp has been achieved.

Self-handicapping, excuse making, and counterfactual thinking: consequences for self-esteem and future motivation.

PubMed

McCrea, Sean M

2008-08-01

Researchers interested in counterfactual thinking have often found that upward counterfactual thoughts lead to increased motivation to improve in the future, although at the cost of increased negative affect. The present studies suggest that because upward counterfactual thoughts indicate reasons for a poor performance, they can also serve as excuses. In this case, upward counterfactual thoughts should result in more positive self-esteem and reduced future motivation. Five studies demonstrated these effects in the context of self-handicapping. First, upward counterfactual thinking was increased in the presence of a self-handicap. Second, upward counterfactual thoughts indicating the presence of a self-handicap protected self-esteem following failure. Finally, upward counterfactual thoughts that protect self-esteem reduced preparation for a subsequent performance as well as performance itself. These findings suggest that the consequences of upward counterfactuals for affect and motivation are moderated by the goals of the individual as well as the content of the thoughts. (c) 2008 APA, all rights reserved

Depositional environments and controls of Juncal Formation, southern San Rafael Mountains, California

DOE Office of Scientific and Technical Information (OSTI.GOV)

Thompson, T.J.

1987-05-01

The lower to middle Eocene Juncal Formation, north of the Santa Ynez fault in easternmost Santa Barbara County, represents the onset of marine sedimentation following an approximately 20-m.y. hiatus. The Juncal paraconformably overlies the upper Campanian Unnamed sandstone and is gradationally overlain by the middle Eocene Matilija Formation. Access to the Juncal exposures of this area was considerably enhanced by the Wheeler fire of July 1985. Facies analysis of both the vertical and lateral exposures of the Juncal Formation (approx. 1400 m thick) indicate that the Juncal represents coalescing outer-fan depositional lobes. This interpretation is based on the lateral continuitymore » of sandstone beds, presence of thickening-upward cycles, and high-concentration sediment gravity flows, bathyal fauna, and regional associations. Local channelization (to 10 m deep) represents the extension of a mid-fan channel over its associated depositional lobe. Outcrops are subparallel to depositional strike in the eastern part of the study area and form a broad syncline in the western part. Together, these exposures allow documentation of the depositional lobes vertically, laterally, and longitudinally. Outer-fan deposits of the Juncal Formation are part of a progradational basin-filling episode. The Juncal grades upward into the outer- to mid-fan depositions of the lower Matilija Formation. The upper Matilija Formation shoals upward into deltaic facies. This regressive sedimentary sequence was probably initiated by the major sea level fall which occurred near the early/middle Eocene boundary and coincides with the onset of fan sedimentation elsewhere along the California margin. Within the study area, depositional lobe activity was probably governed by either minor fluctuations in relative sea level or channel switching up-system.« less

Degassing and differentiation in subglacial volcanoes, Iceland

USGS Publications Warehouse

Moore, J.G.; Calk, L.C.

1991-01-01

Within the neovolcanic zones of Iceland many volcanoes grew upward through icecaps that have subsequently melted. These steep-walled and flat-topped basaltic subglacial volcanoes, called tuyas, are composed of a lower sequence of subaqueously erupted, pillowed lavas overlain by breccias and hyaloclastites produced by phreatomagmatic explosions in shallow water, capped by a subaerially erupted lava plateau. Glass and whole-rock analyses of samples collected from six tuyas indicate systematic variations in major elements showing that the individual volcanoes are monogenetic, and that commonly the tholeiitic magmas differentiated and became more evolved through the course of the eruption that built the tuya. At Herdubreid, the most extensively studies tuya, the upward change in composition indicates that more than 50 wt.% of the first erupted lavas need crystallize over a range of 60??C to produce the last erupted lavas. The S content of glass commonly decreases upward in the tuyas from an average of about 0.08 wt.% at the base to < 0.02 wt.% in the subaerially erupted lava at the top, and is a measure of the depth of water (or ice) above the eruptive vent. The extensive subsurface crystallization that generates the more evolved, lower-temperature melts during the growth of the tuyas, apparently results from cooling and degassing of magma contained in shallow magma chambers and feeders beneath the volcanoes. Cooling may result from percolation of meltwater down cracks, vaporization, and cycling in a hydrothermal circulation. Degassing occurs when progressively lower pressure eruption (as the volcanic vent grows above the ice/water surface) lowers the volatile vapour pressure of subsurface melt, thus elevating the temperature of the liquidus and hastening liquid-crystal differentiation. ?? 1991.

LookSeq: a browser-based viewer for deep sequencing data.

PubMed

Manske, Heinrich Magnus; Kwiatkowski, Dominic P

2009-11-01

Sequencing a genome to great depth can be highly informative about heterogeneity within an individual or a population. Here we address the problem of how to visualize the multiple layers of information contained in deep sequencing data. We propose an interactive AJAX-based web viewer for browsing large data sets of aligned sequence reads. By enabling seamless browsing and fast zooming, the LookSeq program assists the user to assimilate information at different levels of resolution, from an overview of a genomic region to fine details such as heterogeneity within the sample. A specific problem, particularly if the sample is heterogeneous, is how to depict information about structural variation. LookSeq provides a simple graphical representation of paired sequence reads that is more revealing about potential insertions and deletions than are conventional methods.

A late eocene-early Oligocene transgressive event in the Golfo San Jorge basin: Palynological results and stratigraphic implications

NASA Astrophysics Data System (ADS)

Paredes, José M.; Foix, Nicolás; Guerstein, G. Raquel; Guler, María V.; Irigoyen, Martín; Moscoso, Pablo; Giordano, Sergio

2015-11-01

A new Cenozoic dataset in the subsurface of the South Flank of the Golfo San Jorge Basin (Santa Cruz province) allowed to identify a non-previously recognized transgressive event of late Eocene to early Oligocene age. Below of a marine succession containing a dinoflagellate cyst assemblage that characterizes the C/G palynological zone of the Chenque Formation (early Miocene), a 80-110 m thick marine succession contains a palynological assemblage integrated by Gelatia inflata, Diphyes colligerum and Reticulatosphaera actinocoronata supporting the occurrence of a marine incursion in the basin during the Eocene-Oligocene transition (EOT). The new lithostratigraphic unit - here defined as El Huemul Formation - covers in sharp contact to the Sarmiento Formation, and become thinner from East to West; the unit has been identified in about 1800 well logs covering up to 3500 km2, and its subsurface distribution exceed the boundaries of the study area. The El Huemul Formation consists of a thin lag of glauconitic sandstones with fining-upward log motif, followed by a mudstone-dominated succession that coarsening-upward to sandstones, evidencing a full T-R cycle. Preservation of the El Huemul Formation in the subsurface of the South Flank has been favored by the reactivation of WNW-ESE late Cretaceous normal faults, and by the generation of N-S striking normal faults of Paleocene-Eocene age. Flexural loading associated to igneous intrusions of Paleocene?- middle Eocene age also promoted the increase of subsidence in the South Flank of the basin prior to the transgression.

The flare kernel in the impulsive phase

NASA Technical Reports Server (NTRS)

Dejager, C.

1986-01-01

The impulsive phase of a flare is characterized by impulsive bursts of X-ray and microwave radiation, related to impulsive footpoint heating up to 50 or 60 MK, by upward gas velocities (150 to 400 km/sec) and by a gradual increase of the flare's thermal energy content. These phenomena, as well as non-thermal effects, are all related to the impulsive energy injection into the flare. The available observations are also quantitatively consistent with a model in which energy is injected into the flare by beams of energetic electrons, causing ablation of chromospheric gas, followed by convective rise of gas. Thus, a hole is burned into the chromosphere; at the end of impulsive phase of an average flare the lower part of that hole is situated about 1800 km above the photosphere. H alpha and other optical and UV line emission is radiated by a thin layer (approx. 20 km) at the bottom of the flare kernel. The upward rising and outward streaming gas cools down by conduction in about 45 s. The non-thermal effects in the initial phase are due to curtailing of the energy distribution function by escape of energetic electrons. The single flux tube model of a flare does not fit with these observations; instead we propose the spaghetti-bundle model. Microwave and gamma-ray observations suggest the occurrence of dense flare knots of approx. 800 km diameter, and of high temperature. Future observations should concentrate on locating the microwave/gamma-ray sources, and on determining the kernel's fine structure and the related multi-loop structure of the flaring area.

Comparison of adjoint and analytical Bayesian inversion methods for constraining Asian sources of carbon monoxide using satellite (MOPITT) measurements of CO columns

NASA Astrophysics Data System (ADS)

Kopacz, Monika; Jacob, Daniel J.; Henze, Daven K.; Heald, Colette L.; Streets, David G.; Zhang, Qiang

2009-02-01

We apply the adjoint of an atmospheric chemical transport model (GEOS-Chem CTM) to constrain Asian sources of carbon monoxide (CO) with 2° × 2.5° spatial resolution using Measurement of Pollution in the Troposphere (MOPITT) satellite observations of CO columns in February-April 2001. Results are compared to the more common analytical method for solving the same Bayesian inverse problem and applied to the same data set. The analytical method is more exact but because of computational limitations it can only constrain emissions over coarse regions. We find that the correction factors to the a priori CO emission inventory from the adjoint inversion are generally consistent with those of the analytical inversion when averaged over the large regions of the latter. The adjoint solution reveals fine-scale variability (cities, political boundaries) that the analytical inversion cannot resolve, for example, in the Indian subcontinent or between Korea and Japan, and some of that variability is of opposite sign which points to large aggregation errors in the analytical solution. Upward correction factors to Chinese emissions from the prior inventory are largest in central and eastern China, consistent with a recent bottom-up revision of that inventory, although the revised inventory also sees the need for upward corrections in southern China where the adjoint and analytical inversions call for downward correction. Correction factors for biomass burning emissions derived from the adjoint and analytical inversions are consistent with a recent bottom-up inventory on the basis of MODIS satellite fire data.

Relative importance of horizontal and vertical transports to the formation of ionospheric storm-enhanced density and polar tongue of ionization

NASA Astrophysics Data System (ADS)

Liu, Jing; Wang, Wenbin; Burns, Alan; Solomon, Stanley C.; Zhang, Shunrong; Zhang, Yongliang; Huang, Chaosong

2016-08-01

There are still uncertainties regarding the formation mechanisms for storm-enhanced density (SED) in the high and subauroral latitude ionosphere. In this work, we deploy the Thermosphere Ionosphere Electrodynamic General Circulation Model (TIEGCM) and GPS total electron content (TEC) observations to identify the principle mechanisms for SED and the tongue of ionization (TOI) through term-by-term analysis of the ion continuity equation and also identify the advantages and deficiencies of the TIEGCM in capturing high-latitude and subauroral latitude ionospheric fine structures for the two geomagnetic storm events occurring on 17 March 2013 and 2015. Our results show that in the topside ionosphere, upward E × B ion drifts are most important in SED formation and are offset by antisunward neutral winds and downward ambipolar diffusion effects. In the bottomside F region ionosphere, neutral winds play a major role in generating SEDs. SED signature in TEC is mainly caused by upward E × B ion drifts that lift the ionosphere to higher altitudes where chemical recombination is slower. Horizontal E × B ion drifts play an essential role in transporting plasma from the dayside convection throat region to the polar cap to form TOIs. Inconsistencies between model results and GPS TEC data were found: (1) GPS relative TEC difference between storm time and quiet time has "holes" in the dayside ion convection entrance region, which do not appear in the model results. (2) The model tends to overestimate electron density enhancements in the polar region. Possible causes for these inconsistencies are discussed in this article.

34 CFR 645.13 - What additional services do Upward Bound Math and Science Centers provide and how are they...

Code of Federal Regulations, 2010 CFR

2010-07-01

... 34 Education 3 2010-07-01 2010-07-01 false What additional services do Upward Bound Math and... Program? § 645.13 What additional services do Upward Bound Math and Science Centers provide and how are... provided under § 645.11(b), an Upward Bound Math and Science Center must provide— (1) Intensive instruction...

34 CFR 645.14 - What additional services do Upward Bound Math and Science Centers provide and how are they...

Code of Federal Regulations, 2011 CFR

2011-07-01

... 34 Education 3 2011-07-01 2011-07-01 false What additional services do Upward Bound Math and... Program? § 645.14 What additional services do Upward Bound Math and Science Centers provide and how are... provided under § 645.11(b), an Upward Bound Math and Science Center must provide— (1) Intensive instruction...

34 CFR 645.14 - What additional services do Upward Bound Math and Science Centers provide and how are they...

Code of Federal Regulations, 2014 CFR

2014-07-01

... 34 Education 3 2014-07-01 2014-07-01 false What additional services do Upward Bound Math and... Program? § 645.14 What additional services do Upward Bound Math and Science Centers provide and how are... provided under § 645.11(b), an Upward Bound Math and Science Center must provide— (1) Intensive instruction...

34 CFR 645.14 - What additional services do Upward Bound Math and Science Centers provide and how are they...

Code of Federal Regulations, 2012 CFR

2012-07-01

... 34 Education 3 2012-07-01 2012-07-01 false What additional services do Upward Bound Math and... Program? § 645.14 What additional services do Upward Bound Math and Science Centers provide and how are... provided under § 645.11(b), an Upward Bound Math and Science Center must provide— (1) Intensive instruction...

34 CFR 645.14 - What additional services do Upward Bound Math and Science Centers provide and how are they...

Code of Federal Regulations, 2013 CFR

2013-07-01

... 34 Education 3 2013-07-01 2013-07-01 false What additional services do Upward Bound Math and... Program? § 645.14 What additional services do Upward Bound Math and Science Centers provide and how are... provided under § 645.11(b), an Upward Bound Math and Science Center must provide— (1) Intensive instruction...

Buoyant Effects on the Flammability of Silicone Samples Planned for the Spacecraft Fire Experiment (Saffire)

NASA Technical Reports Server (NTRS)

Niehaus, Justin; Ferkul, Paul V.; Gokoglu, Suleyman; Ruff, Gary

2015-01-01

Flammability experiments on silicone samples were conducted in anticipation of the Spacecraft Fire Experiment (Saffire). The sample geometry was chosen to match the NASA 6001 Test 1 specification, namely 5 cm wide by 30 cm tall. Four thicknesses of silicone (0.25, 0.36, 0.61 and 1.00 mm) were examined. Tests included traditional upward buoyant flame spread using Test 1 procedures, downward opposed flow flame spread, horizontal and angled flame spread, forced flow upward and downward flame spread. In addition to these configurations, upward and downward tests were also conducted in a chamber with varying oxygen concentrations. In the upward buoyant flame spread tests, the flame generally did not burn the entire sample. As thickness was increased, the flame spread distance decreased before flame extinguishment. For the thickest sample, ignition could not be achieved. In the downward tests, the two thinnest samples permitted the flame to burn the entire sample, but the spread rate was lower compared to the corresponding upward values. The other two thicknesses could not be ignited in the downward configuration. The increased flammability for downward spreading flames relative to upward ones is uncommon. The two thinnest samples also burned completely in the horizontal configuration, as well as at angles up to 75 degrees from the horizontal. The upward and downward flammability behavior was compared in atmospheres of varying oxygen concentration to determine a maximum oxygen concentration for each configuration. Upward tests in air with an added forced flow were more flammable. Complementary analyses using SEM and TGA techniques suggest the importance of the silica layer formed on the burned sample surface. As silicone burns upward, silica deposits downstream •If the silicone is ignited in the downward configuration, it burns the entire length of the sample •Burning upward at an angle increases the burn length in some cases possibly due to less silica deposition •Forced flow in the upward burning case increases flammability, likely due to an increase in convective flow preventing silica from depositing •Samples in upward configuration burning under forced flow self extinguish after forced flow is removed

A case study of lightning attachment to flat ground showing multiple unconnected upward leaders

NASA Astrophysics Data System (ADS)

Cummins, Kenneth L.; Krider, E. Philip; Olbinski, Mike; Holle, Ronald L.

2018-04-01

On 10 July 2015, a cloud-to-ground (CG) lightning flash that produced two ground terminations was photographed from inside the safety of a truck in southern New Mexico. An analysis of archived NLDN data verified that this was a two-stroke flash, and a close-up view of the first stroke shows that it also initiated at least 12 unconnected, upward leaders (or "streamers") near the ground termination. No unconnected upward leaders were seen near the second ground attachment. After combining an analysis of the photograph with information provided by the NLDN, we infer that the first stroke was of negative (normal) polarity, had modest peak current, and struck about 460 m (± 24%) from the camera. Attachment occurred when an upward-propagating positive leader reached an inferred height of about 21 m above local ground. The second stroke struck ground about 740 m from the camera, and the height of its attachment leader is estimated to be 15 m. The estimated lengths of the unconnected upward leaders in the two-dimensional (2-D) plane of the first stroke range from 2 to 8 m, and all appear to be located within 15 m (2-D) of the main ground termination, with 24% uncertainty. Many of the unconnected upward leaders (inferred to be positive) exhibit multiple upward branches, and most of those branches have upward-directed forks or splits at their ends. This is the first report showing such extensive branching for positive upward leaders in natural lightning strikes to ground. None of the upward leaders can be seen to emanate from the tops of tall, isolated, or pointed objects on the ground, but they likely begin on small plants and rocks, or flat ground. In terms of lightning safety, this photo demonstrates that numerous upward leaders can be produced near a lightning strike point and have the potential to damage or cause injury at more than one specific point on the ground.

Constraints on Upward Migration of Hydraulic Fracturing Fluid and Brine

PubMed Central

Flewelling, Samuel A; Sharma, Manu

2014-01-01

Recent increases in the use of hydraulic fracturing (HF) to aid extraction of oil and gas from black shales have raised concerns regarding potential environmental effects associated with predictions of upward migration of HF fluid and brine. Some recent studies have suggested that such upward migration can be large and that timescales for migration can be as short as a few years. In this article, we discuss the physical constraints on upward fluid migration from black shales (e.g., the Marcellus, Bakken, and Eagle Ford) to shallow aquifers, taking into account the potential changes to the subsurface brought about by HF. Our review of the literature indicates that HF affects a very limited portion of the entire thickness of the overlying bedrock and therefore, is unable to create direct hydraulic communication between black shales and shallow aquifers via induced fractures. As a result, upward migration of HF fluid and brine is controlled by preexisting hydraulic gradients and bedrock permeability. We show that in cases where there is an upward gradient, permeability is low, upward flow rates are low, and mean travel times are long (often >106 years). Consequently, the recently proposed rapid upward migration of brine and HF fluid, predicted to occur as a result of increased HF activity, does not appear to be physically plausible. Unrealistically high estimates of upward flow are the result of invalid assumptions about HF and the hydrogeology of sedimentary basins. PMID:23895673

Tidal dunes versus tidal bars: The sedimentological and architectural characteristics of compound dunes in a tidal seaway, the lower Baronia Sandstone (Lower Eocene), Ager Basin, Spain

NASA Astrophysics Data System (ADS)

Olariu, Cornel; Steel, Ronald J.; Dalrymple, Robert W.; Gingras, Murray K.

2012-11-01

The Lower Eocene Baronia Formation in the Ager Basin is interpreted as a series of stacked compound dunes confined within a tectonically generated embayment or tidal seaway. This differs from the previous interpretation of lower Baronia sand bodies as tidal bars in the front of a delta. The key architectural building block of the succession, the deposit of a single compound dune, forms a 1-3 m-thick, upward coarsening succession that begins with highly bioturbated, muddy, very fine to fine grained sandstone that contains an open-marine Cruziana ichnofacies. This is overlain gradationally by ripple-laminated sandstone that is commonly bioturbated and contains mud drapes. The succession is capped by fine- to coarse-grained sandstones that contain both planar and trough cross-strata with unidirectional or bi-directional paleocurrent directions and occasional thin mud drapes on the foresets. The base of a compound dune is gradational where it migrated over muddy sandstone deposited between adjacent dunes, but is sharp and erosional where it migrated over the stoss side of a previous compound dune. The cross strata that formed by simple superimposed dunes dip in the same direction as the inclined master bedding planes within the compound dune, forming a forward-accretion architecture. This configuration is the fundamental reason why these sandbodies are interpreted as compound tidal dunes rather than as tidal bars, which, in contrast, generate lateral-accretion architecture. In the Baronia, fields of compound dunes generated tabular sandbodies 100s to 1000s of meters in extent parallel to the paleocurrent direction and up to 6 m thick that alternate vertically with highly bioturbated muddy sandstones (up to 10 m thick) that represent the low-energy fringes of the dune fields or periods of high sea level when current speeds decreased. Each cross-stratified sandstone sheet (compound-dune complexes) contains overlapping lenticular "shingles" formed by individual compound dunes, separated by 10-30 cm of bioturbated muddy sandstone, which migrated over each other in an offlapping, progradational fashion. Each compound-dune complex (the best reservoir rock) thins as it downlaps, at average rates of 3-4 m/km in a dip direction. These reservoir units can be comprised of discrete compartments, each formed by a single compound dune, that extend for 500-1000 m in the direction of the current, and are at least 350-600 m wide in a flow-transverse direction. Distinguishing between tidal bars and tidal dunes in an ancient tidal succession can be difficult because both can contain similar cross-bedded facies and have overlapping thicknesses; however, the internal architecture and sandbody orientations are different. Tidal bars have their long axis almost parallel both to the tidal current direction and to the strike of the lateral-accretion master surfaces. In inshore areas, they are bounded by channels and fine upward. Large compound tidal dunes, in contrast, have their crest oriented approximately normal to the tidal currents and contain a forward-accretion architecture. Coeval channels are uncommon within large, sub-tidal dune fields. The above distinctions are very important to reservoir description and modeling, because the long axis of the intra-reservoir compartments in the two cases will be 90° apart.

Textural and stable isotope studies of the Big Mike cupriferous volcanogenic massive sulfide deposit, Pershing County, Nevada.

USGS Publications Warehouse

Rye, R.O.; Roberts, R.J.; Snyder, W.S.; Lahusen, G.L.; Motica, J.E.

1984-01-01

The Big Mike deposit is a massive sulphide lens entirely within a carbonaceous argillite of the Palaeozoic Havallah pelagic sequence. The massive ore contains two generations of pyrite, a fine- and a coarse-grained variety; framboidal pyrite occurs in the surrounding carbonaceous argillite. Coarse grained pyrite is largely recrystallized fine-grained pyrite and is proportionately more abundant toward the margins of the lens. Chalcopyrite and sphalerite replace fine-grained pyrite and vein-fragmented coarse-grained pyrite. Quartz fills openings in the sulphide fabric. S-isotope data are related to sulphide mineralogy and textures. Isotopically light S in the early fine-grained pyrite was probably derived from framboidal biogenic pyrite. The S-isotope values of the later coarse-grained pyrite and chalcopyrite probably reflect a combination of reduced sea-water sulphate and igneous S. Combined S- and O-isotope and textural data accord with precipitation of fine-grained pyrite from a hydrothermal plume like those at the East Pacific Rise spreading centre at lat. 21oN. The primary material was recystallized and mineralized by later fluids of distinctly different S-isotope composition. -G.J.N.

Biostratigraphy of a Middle Miocene-Pliocene sequence from Cumarebo area, Falcon State, northwestern Venezuela

DOE Office of Scientific and Technical Information (OSTI.GOV)

Giffuni, G.

1991-03-01

The southern Caribbean region offers little in the way of continuous sequences for the late Neogene. An upward facies shallowing trend unfavorable for planktonic foraminifers and erosional truncation seems to be almost a rule for such sediments. A fairly complete sedimentary sequence mainly represented by clays, silts, and carbonate rocks from the Cumarebo region, Falcon State, northwestern Venezuela, was chosen to study the biostratigraphy of the late Neogene using foraminifers. More than one hundred surface samples were analyzed throughout. The study of foraminiferal fossil assemblages and other microfossils was also used to define paleoenvironments of deposition. Four formations are involvedmore » in this work. From base to top they are the Socorro, Caujarao, El Veral, and Tucupido. From the study of planktonic foraminifers, six biostratigraphic zones were recognized: Globorotalia mayeri Zone, Globorotalia menardii Zone, Globorotalia acostaensis Zone, Globorotalia humerosa Zone, Globorotalia margaritae Zone, and Globorotalia miocenica Zone. These zones indicate that the age of the sequence ranks from late middle Miocene to middle Pliocene. Generally speaking, with some variations, the paleoenvironments of the sequence show a shallowing trend from marine upper-middle bathyal to middle neritic. These results make an important contribution to the stratigraphy and geologic history of the Cumarebo area, which is related to the Agua Salada basin, and may help clarify the paleogeography and paleotectonic evolution of this region for petroleum exploration.« less

[Hydrologic variability and sensitivity based on Hurst coefficient and Bartels statistic].

PubMed

Lei, Xu; Xie, Ping; Wu, Zi Yi; Sang, Yan Fang; Zhao, Jiang Yan; Li, Bin Bin

2018-04-01

Due to the global climate change and frequent human activities in recent years, the pure stochastic components of hydrological sequence is mixed with one or several of the variation ingredients, including jump, trend, period and dependency. It is urgently needed to clarify which indices should be used to quantify the degree of their variability. In this study, we defined the hydrological variability based on Hurst coefficient and Bartels statistic, and used Monte Carlo statistical tests to test and analyze their sensitivity to different variants. When the hydrological sequence had jump or trend variation, both Hurst coefficient and Bartels statistic could reflect the variation, with the Hurst coefficient being more sensitive to weak jump or trend variation. When the sequence had period, only the Bartels statistic could detect the mutation of the sequence. When the sequence had a dependency, both the Hurst coefficient and the Bartels statistics could reflect the variation, with the latter could detect weaker dependent variations. For the four variations, both the Hurst variability and Bartels variability increased with the increases of variation range. Thus, they could be used to measure the variation intensity of the hydrological sequence. We analyzed the temperature series of different weather stations in the Lancang River basin. Results showed that the temperature of all stations showed the upward trend or jump, indicating that the entire basin had experienced warming in recent years and the temperature variability in the upper and lower reaches was much higher. This case study showed the practicability of the proposed method.

DNA and RNA sequencing by nanoscale reading through programmable electrophoresis and nanoelectrode-gated tunneling and dielectric detection

DOEpatents

Lee, James W.; Thundat, Thomas G.

2005-06-14

An apparatus and method for performing nucleic acid (DNA and/or RNA) sequencing on a single molecule. The genetic sequence information is obtained by probing through a DNA or RNA molecule base by base at nanometer scale as though looking through a strip of movie film. This DNA sequencing nanotechnology has the theoretical capability of performing DNA sequencing at a maximal rate of about 1,000,000 bases per second. This enhanced performance is made possible by a series of innovations including: novel applications of a fine-tuned nanometer gap for passage of a single DNA or RNA molecule; thin layer microfluidics for sample loading and delivery; and programmable electric fields for precise control of DNA or RNA movement. Detection methods include nanoelectrode-gated tunneling current measurements, dielectric molecular characterization, and atomic force microscopy/electrostatic force microscopy (AFM/EFM) probing for nanoscale reading of the nucleic acid sequences.

Hydrogeology and water quality of the shallow aquifer system at the Explosive Experimental Area, Naval Surface Warfare Center, Dahlgren Site, Dahlgren, Virginia

USGS Publications Warehouse

Bell, C.F.

1996-01-01

In October 1993, the U.S. Geological Survey began a study to characterize the hydrogeology of the shallow aquifer system at the Explosive Experimental Area, Naval Surface Warfare Center, Dahlgren Site, Dahlgren, Virginia, which is located on the Potomac River in the Coastal Plain Physiographic Province. The study provides a description of the hydrogeologic units, directions of ground-water flow, and back-ground water quality in the study area to a depth of about 100 feet. Lithologic, geophysical, and hydrologic data were collected from 28 wells drilled for this study, from 3 existing wells, and from outcrops. The shallow aquifer system at the Explosive Experimental Area consists of two fining-upward sequences of Pleistocene fluvial-estuarine deposits that overlie Paleocene-Eocene marine deposits of the Nanjemoy-Marlboro confining unit. The surficial hydrogeologic unit is the Columbia aquifer. Horizontal linear flow of water in this aquifer generally responds to the surface topography, discharging to tidal creeks, marshes, and the Potomac River, and rates of flow in this aquifer range from 0.003 to 0.70 foot per day. The Columbia aquifer unconformably overlies the upper confining unit 12-an organic-rich clay that is 0 to 55 feet thick. The upper confining unit conformably overlies the upper confined aquifer, a 0- to 35-feet thick unit that consists of interbedded fine-grained to medium-grained sands and clay. The upper confined aquifer probably receives most of its recharge from the adjacent and underlying Nanjemoy-Marlboro confining unit. Water in the upper confined aquifer generally flows eastward, northward, and northeastward at about 0.03 foot per day toward the Potomac River and Machodoc Creek. The Nanjemoy-Marlboro confining unit consists of glauconitic, fossiliferous silty fine-grained sands of the Nanjemoy Formation. Where the upper confined system is absent, the Nanjemoy-Marlboro confining unit is directly overlain by the Columbia aquifer. In some parts of the Explosive Experimental Area, horizontal hydraulic conductivities of the Nanjemoy-Marlboro confining unit and the Columbia aquifer are similar (from 10-4 to 10-2 foot per day), and these units effectively combine to form a thick (greater than 50 feet) aquifer. The background water quality of the shallow aquifer system is characteristic of ground waters in the Virginia Coastal Plain Physiographic Province. Water in the Columbia aquifer is a mixed ionic type, has a median pH of 5.9, and a median total dissolved solids of 106 milligrams per liter. Water in the upper confined aquifer and Nanjemoy-Marlboro confining unit is a sodium- calcium-bicarbonate type, and generally has higher pH, dissolved solids, and alkalinity than water in the Columbia aquifer. Water in the upper confined aquifer and some parts of the Columbia aquifer is anoxic, and it has high concentrations of dissolved iron, manganese, and sulfide.

Exploring the effects of temperature and grain size on plumes associated with PDCs through analogue experimentation

NASA Astrophysics Data System (ADS)

Mitchell, S. J.; Eychenne, J.; Rust, A.

2015-12-01

Pyroclastic density currents (PDCs) often loft upwards into convective, buoyant co-PDC plumes. Recent analogue experiments using a unimodal grain size of 22 ± 6 μm (Andrews & Manga, 2012) have established that plume generation is aided by PDC interaction with a topographic barrier. Here, we have simulated the onset of co-PDC plumes from the collapse of concentrated particle-gas mixtures comprised of unimodal or bimodal grain size distributions (GSD) of glass beads, using combinations of lognormal populations with modes of 35, 195 and 590 μm. The collapse of a mixture, with constant mass 2950 ± 150 g, induced the propagation of a gravity current channelized down a 13° sloping tank; a barrier in the tank caused the gravity current to produce a plume of particles. Experiments were recorded with high speed visible and thermal-infrared cameras. Initial GSD and temperature of the mixture were varied to assess the effects of the addition of a coarser component on plume generation. Analogue co-PDC plumes were only produced when a proportion of fine grains (35 μm) was present in the initial granular mixture. Sampling of the particles entrained in the co-PDC plumes revealed that fine grains (35 μm) are preferentially lofted, although a few coarser particles (195 or 590 μm) are also entrained in the co-PDC plumes and settle closer to the area of uplift. Increasing the initial temperature of the mixture increases plume height measured at 1 and 2s after onset; this is supported by repeat experiments at specific conditions. Bimodal mixtures containing both fine (35 μm) and coarser (195 or 590 μm) grains result in plume heights and initial flow velocities higher than observed in unimodal fine-grained experiments of the same total mass of particles. Repeat experiments identify the natural variability in plume generation under the same nominal conditions, which is likely due to the combined variations of momentum during flow propagation and heat-driven buoyancy, as well as the homogeneity of the initial particle mixture.

Does urban sprawl hold down upward mobility?

USGS Publications Warehouse

Ewing, R.; Hamidi, Shima; Grace, James B.; Wei, Y.

2016-01-01

Contrary to the general perception, the United States has a much more class-bound society than other wealthy countries. The chance of upward mobility for Americans is just half that of the citizens of the Denmark and many other European countries. In addition to other influences, the built environment may contribute to the low rate of upward mobility in the U.S. This study tests the relationship between urban sprawl and upward mobility for commuting zones in the U.S. We examine potential pathways through which sprawl may have an effect on mobility. We use structural equation modeling to account for both direct and indirect effects of sprawl on upward mobility. We find that upward mobility is significantly higher in compact areas than sprawling areas. The direct effect, which we attribute to better job accessibility in more compact commuting zones, is stronger than the indirect effects. Of the indirect effects, only one, through the mediating variable income segregation, is significant.

Welded slump-graded sand couplets: evidence for slide generated turbidity currents

NASA Astrophysics Data System (ADS)

Stanley, Daniel Jean

1982-09-01

Some massive channelized strata preserved in the rock record are characterized by a lower slump member which evolves upward to a turbidite. This merging is indicative of probable generation of sediment gravity flows from submarine sliding. Conditions essential for deposition of such sequences are short transport distance between point of failure and depositional site, and an environment likely to retain both facies. Fan valleys are a likely setting for welded couplets: flowing sand, initiated by the sliding event, comes to rest at nearly the same time and position as the slump mass deposited near the base of the valley wall and in the axis proper.

Local variation of inundation, sedimentary characteristics, and mineral assemblages of the 2011 Tohoku-oki tsunami on the Misawa coast, Aomori, Japan

NASA Astrophysics Data System (ADS)

Nakamura, Yugo; Nishimura, Yuichi; Putra, Purna Sulastya

2012-12-01

The 2011 Tohoku-oki tsunami caused severe damage to the coastal regions of eastern Japan and left a sediment veneer over affected areas. We discuss differences in depositional characteristics of the 2011 Tohoku-oki tsunami from the viewpoint of the sediment source, coastal topography and flow height. The study area on the Misawa coast, northern Tohoku, includes a 20 km long coastline with sandy beaches, coastal dunes and a gently sloping lowland. This landscape assemblage provides an opportunity to examine the effects of topography on the characteristics of the tsunami deposit. During field surveys conducted from April 10 to May 2, 2011, we described the thickness, facies, and structure of the tsunami deposit. We also collected sand samples at approximately 20 m intervals along 13 shore-perpendicular transects extending up to 550 m inland, for grain size and mineral assemblage analysis. The tsunami flow height was estimated by measuring the elevation of debris found in trees, broken tree limbs, or water marks on buildings. The nature of the coastal lowland affected the flow height and inundation distance. In the southern part of the study area, where there is a narrow, 100 m wide low-lying coastal strip, the run-up height reached 10 m on the landward terrace slopes. To the north, the maximum inundation reached 550 m with a run-up height of 3.2 m on the wider, low-lying coastal topography. The average flow height was 4-5 m. The tsunami eroded coastal dunes and formed small scarps along the coast. Immediately landward of the coastal dunes the tsunami deposit was more than 20 cm thick, but thinned markedly inland from this point. Close to the dunes the deposit was composed largely of medium sand (1-2 Φ) with planar and parallel bedding, but with no apparent upward fining or coarsening. The grain size was similar to that of the coastal dune and we infer that the dunes were the local source material for the tsunami deposit at this point. The mineral assemblage of the tsunami deposit was dominated by orthopyroxene and clinopyroxene and was also similar to the dune and beach sand. At sites more than half the inundation distance inland, the thinner tsunami deposit consisted mainly of fine sand (2.375 Φ) with some upward fining. The difference in grain size and sedimentary characteristics was probably caused by differences in sediment transportation and depositional processes. We infer that the well-sorted, finer sediments were deposited out of suspension, whereas the relatively coarse sands were laid down from traction flows. The depositional characteristics of the 2011 Tohoku-oki tsunami deposit appeared to have been affected mainly by the coastal topography and the extent of erosion at any one point, as opposed to flow height.

Shallow-seated explosions in the construction of the Motukorea tuff ring (Auckland, New Zealand): Evidence from lithic and sedimentary characteristics

NASA Astrophysics Data System (ADS)

Agustín-Flores, Javier; Németh, Károly; Cronin, Shane J.; Lindsay, Jan M.; Kereszturi, Gábor

2015-10-01

At least 52 eruption centres are scattered within the 360 km2 Auckland Volcanic Field (AVF). Motukorea, now an island in the Waitemata Harbour, is one of 39 AVF volcanoes that experienced a phreatomagmatic explosive phase, before a magmatic phase. The volcano erupted through a 200-300 m-thick, consolidated, mudstone/sandstone sequence of the Miocene Waitemata Group, which overlies the Waipapa Terrane greywacke basement. Detailed field descriptions of the sedimentary characteristics of the early phreatomagmatic deposits were carried out, along with examination of lithics. The ejecta ring deposit comprises 55 to 60 vol.% lithics, of which Waitemata Group fragments constitute approximately 90 vol.%, whereas < 10 vol.% are Waipapa fragments, suggesting a dominance of shallow fragmentation. The sedimentary characteristics of the stratigraphic sequence at Motukorea suggest a dominance of wet surges at the beginning of the eruption with progression into drier sequences upwards. This is reflected in increasing inter-bedded juvenile-pyroclast-dominated fall deposits up-sequence. These characteristics are attributed to the changing hydrogeological conditions within the diatreme and the host rocks. These findings shed light on the eruption dynamics of phreatomagmatic eruptions through consolidated rocks in the AVF and enable the depiction of a scenario of future eruptions within the field in similar substrates.

Fine-scale population structure and the era of next-generation sequencing.

PubMed

Henn, Brenna M; Gravel, Simon; Moreno-Estrada, Andres; Acevedo-Acevedo, Suehelay; Bustamante, Carlos D

2010-10-15

Fine-scale population structure characterizes most continents and is especially pronounced in non-cosmopolitan populations. Roughly half of the world's population remains non-cosmopolitan and even populations within cities often assort along ethnic and linguistic categories. Barriers to random mating can be ecologically extreme, such as the Sahara Desert, or cultural, such as the Indian caste system. In either case, subpopulations accumulate genetic differences if the barrier is maintained over multiple generations. Genome-wide polymorphism data, initially with only a few hundred autosomal microsatellites, have clearly established differences in allele frequency not only among continental regions, but also within continents and within countries. We review recent evidence from the analysis of genome-wide polymorphism data for genetic boundaries delineating human population structure and the main demographic and genomic processes shaping variation, and discuss the implications of population structure for the distribution and discovery of disease-causing genetic variants, in the light of the imminent availability of sequencing data for a multitude of diverse human genomes.

Specifics of the methodological approach to the study of nanoparticle impact on human health in the production of non-metallic nanomaterials for construction purposes

NASA Astrophysics Data System (ADS)

Ayzenshtadt, A. M.; Frolova, M. A.; Makhova, T. A.; Danilov, V. E.; Gupta, Piyush K.; Verma, Rama S.

2018-01-01

Minerals samples of mixed-genesis rocks in a finely dispersed state were obtained and studied, namely sand deposit (Kholmogory district) and basalt (Myandukha deposit, Plesetsk district) in Arkhangelsk region. The paper provides the chemical composition data used to calculate the specific mass atomization energy of rocks. The energy parameters of the micro and nano systems of the rock samples - free surface energy and surface activity - were calculated. For toxicological evaluation of the materials obtained, next-generation sequencing (NGS) was used to perform metagenomic analysis which allowed determining the species diversity of microorganisms in the samples under study. It was shown that the sequencing method and metagenomic analysis are applicable and provide good reproducibility for the analysis of the toxicological properties of selected rock samples. The correlation of the surface activity of finely dispersed rock systems and the species diversity of cultivated microorganisms on the raw material was observed.

Fine-scale patterns of population stratification confound rare variant association tests.

PubMed

O'Connor, Timothy D; Kiezun, Adam; Bamshad, Michael; Rich, Stephen S; Smith, Joshua D; Turner, Emily; Leal, Suzanne M; Akey, Joshua M

2013-01-01

Advances in next-generation sequencing technology have enabled systematic exploration of the contribution of rare variation to Mendelian and complex diseases. Although it is well known that population stratification can generate spurious associations with common alleles, its impact on rare variant association methods remains poorly understood. Here, we performed exhaustive coalescent simulations with demographic parameters calibrated from exome sequence data to evaluate the performance of nine rare variant association methods in the presence of fine-scale population structure. We find that all methods have an inflated spurious association rate for parameter values that are consistent with levels of differentiation typical of European populations. For example, at a nominal significance level of 5%, some test statistics have a spurious association rate as high as 40%. Finally, we empirically assess the impact of population stratification in a large data set of 4,298 European American exomes. Our results have important implications for the design, analysis, and interpretation of rare variant genome-wide association studies.

Short range spread-spectrum radiolocation system and method

DOEpatents

Smith, Stephen F.

2003-04-29

A short range radiolocation system and associated methods that allow the location of an item, such as equipment, containers, pallets, vehicles, or personnel, within a defined area. A small, battery powered, self-contained tag is provided to an item to be located. The tag includes a spread-spectrum transmitter that transmits a spread-spectrum code and identification information. A plurality of receivers positioned about the area receive signals from a transmitting tag. The position of the tag, and hence the item, is located by triangulation. The system employs three different ranging techniques for providing coarse, intermediate, and fine spatial position resolution. Coarse positioning information is provided by use of direct-sequence code phase transmitted as a spread-spectrum signal. Intermediate positioning information is provided by the use of a difference signal transmitted with the direct-sequence spread-spectrum code. Fine positioning information is provided by use of carrier phase measurements. An algorithm is employed to combine the three data sets to provide accurate location measurements.

Kulanaokuaiki 3: Product of an Energetic, Diatreme-Like Eruption at Kilauea

NASA Astrophysics Data System (ADS)

Fiske, R. S.; Rose, T. R.; Swanson, D. A.

2006-12-01

Kulanaokuaiki 3 (K-3), one of five units of the Kulanaokuaiki tephra, was erupted at ~AD 850 and blanketed large near-summit areas. Most complete remnants today are found in the Koa`e fault system and on the volcano`s south flank, S and SE of the summit. There, K-3 consists mostly of crystal-rich scoria lapilli contained in two sub-units, generally 1-8 cm thick, separated by a <1 cm "parting" of coarse ash and/or reticulite lapilli. Fine ash (<0.5 mm) makes up <3% of the two scoria units, increasing upward to ~10%. Dense lithic clasts are contained in both sub-units; ~85% of these consist of a wide variety of basalt (some enclosed in cored bombs), and ~12% are fine-coarse gabbro (some containing interstitial glass w/vesicles). The lithics are typically fresh, suggesting that the eruptive conduit pierced pristine parts of the volcano`s edifice rather than long-established, hydrothermally altered conduit systems. Erosion has stripped most K-3 from the south flank, leaving its lithics as scattered lags. Dense clasts, >4 kg and 18 cm across, are found as far as 7 km from the summit; progressively smaller clasts (~3-4 cm) fell at the coastline, 17 km away. The K-3 scoria deposits are unremarkable to the eye, but this belies cryptic vertical zonation that characterizes these units at widespread south-flank localities. The specific gravity of scoria lapilli (7-10 mm dia.) decreases upward in the lower sub-unit, accompanied by decreasing whole-rock MgO values. The pattern is reversed in the upper sub-unit, where specific gravity and MgO values increase upward. Available information suggests the specific gravity and MgO variations correlate with percentages of phenocrystic olivine. Preliminary geobarometry of pyroxene-glass pairs suggests that some gabbro was crystallizing at 5-7 km depth before exploding from the volcano-- far deeper than expected in a phreatomagmatic eruption. We interpret that CO2, known to be released in huge volumes from Kilauea`s summit, and which initially exsolves from basaltic magma at ~10 km depth, was the likely propellant for the diatreme-like K-3 eruption. While reaming a conduit to the surface, the streaming CO2, knicked the upper part of a magma body (likely dike-shaped), initiating its disintegration. The first pulse of the eruption released scoria that, along with spalled conduit wall rocks, erupted to form the lower K-3 sub-unit. Following a brief pause, when the air partly cleared to form the mid-K-3 parting, a second pulse entrained scoria originating from progressively deeper and more olivine-rich parts of the magma body. As a result, scoria containing greater percentages of phenocrystic olivine was erupted, and these were showered over the south flank to produce the observed upside-down "magma-chamber grading" in the upper K-3 sub-unit. Multi-mach exit velocities are visualized, and entrained lithic clasts may have been carried to heights of 15-20 km. These clasts were carried to the southeast as they fell through high-level northwesterly winds.

Subtle evidence for paleoseismicity in the cratonic interior, U.S. A

NASA Astrophysics Data System (ADS)

Jacobson, W. Z.; Cowan, C. A.; Runkel, A. C.

2009-12-01

Intrastratal deformation features in Cambrian-Ordovician boundary strata in southeastern Minnesota, U.S.A., may be evidence for mid-continent paleoseismicity. Deformation features are present tens of kilometers east of the Midcontinent Rift zone, and include sand blows, water escape, and convolute lamination, as well as more subtle structures indicative of sand-on-sand density contrasts. The stratigraphic interval of interest is the uppermost Jordan Formation (Furongian), a very fine- to coarse-grained quartzose sandstone, and the basal Oneota Formation (Tremadocian), a heterolithic sandstone and dolostone that grades upward into bedded dolostone. Along the Jordan-Oneota boundary, deformation features are extensive, and the result of sand liquefaction and fluidization. Upward migration of excess pore water was obstructed in places by shale drapes that locally ruptured, causing sand to be injected into overlying beds. Movement of sand in this manner created voids that were filled by a chaotic mixture of sand, shale, and pebbles that collapsed from above. Where upwardly percolating water was not confined by shale, intrastratal flow produced water escape pillars. Other deformation features are present up to ~3 m below the Jordan-Oneota boundary, in well-sorted, pure quartzose sandstone. These features are inconspicuous because of the uniform texture and minerology of the sediment, and some were previously interpreted as synsedimentary phenomena. These features are common along foreset boundaries in large-scale (>3 m) cross-strata, and include cm-scale digitate interfaces (interfingering) and in situ rounded forms interpreted as sand-on-sand boudinage. They formed from density contrasts between individual foresets within the cross-bedded sand. The top of the lower foreset was less dense but more viscous than the base of the succeeding foreset. Such contrasts were the result of subtle packing and grain size differences formed during the avalanche process during dune migration. We interpret the trigger for deformation, however, to be a post-depositional (post-Oneota) event because of the association of these subtle features with the more obvious liquefaction features in the immediately overlying boundary strata (and the increased intensity of deformation along foresets upward toward the boundary). Although these features cannot be unambiguously attributed to a paleoseismic event, some other common possibilities can be eliminated, including slumping and loading by sediment, tides, and storm waves. These intrastratal deformation features are documented in one outcrop in southeastern Minnesota. The subtlety of some of these features suggests that similar features may have been overlooked in nearby outcrops. Indeed, we are now revisiting unusual features in some localities that we previously interpreted as synsedimentary phenomena. Seismites may be difficult to generate, and to recognize, in quartoze sandstones of the mid-continent due to the lack of significantly thick clay beds to serve as permeability barriers, and the homogenous textural and mineralogical attributes of these units.

Regional stratigraphy, sedimentology, and tectonic significance of Oligocene-Miocene sedimentary and volcanic rocks, northern Baja California, Mexico

NASA Astrophysics Data System (ADS)

Dorsey, Rebecca J.; Burns, Beverly

1994-01-01

Upper Oligocene (?) to middle Miocene sedimentary and volcanic rocks in northern Baja California were deposited along the western margin of North America during subduction of the Guadalupe plate and southward migration of the Rivera Triple Junction. Regional mapping and compilation of stratigraphic data reveal a sequence of three regionally traceable stratigraphic units. (1) Oligocene (?) to lower Miocene Mesa Formation: basal quartz-rich fluvial sandstone, grus, conglomerate, and accessory facies, whose detrital compositions reflect the composition of local pre-Tertiary basement rock. (2) Lower to middle Miocene Comondú Formation: laterally variable sequence of volcaniclastic conglomerate, breccia, sandstone, tuff and minor volcanic flow units. (3) Widespread mesa-capping rhyolite tuff, typically welded and crystal-rich, probably upper Miocene in age. The Mesa Formation overlies a highly irregular and deeply dissected erosional surface developed on pre-Tertiary basement rock. The shift from pre-Mesa erosion to widespread (though localized) deposition and valley-filling records the final phase of late Cretaceous to middle Tertiary regional subsidence and eastward transgression that resulted from slow cooling and thermal contraction of Cretaceous arc crust during a temporal gap in magmatic activity along the western Cordilleran margin. Nonmarine sediments of the Mesa Formation were deposited in small, steep-walled paleovalleys and basins that gradually filled and evolved to form through-going, low-energy ephemeral stream systems. The gradational upward transition from the Mesa to Comondú Formation records the early to middle Miocene onset of subduction-related arc magmatism in eastern Baja California and related westward progradation of alluvial volcaniclastic aprons shed from high-standing eruptive volcanic centers. Pre-existing streams were choked with the new influx of volcanic detritus, causing the onset of rapid sediment deposition by stream flows and dilute to viscous sediment gravity flows. Deposits of the Comondú Formation thin and fine systematically westward, from proximal volcanic conglomerate and breccia with thin basalt and andesite flows in the east, to distal volcaniclastic fluvial sandstone in the west. These proximal—distal relationships help to define the location and paleogeography of active arc-flanking volcaniclastic alluvial aprons of the Miocene magmatic arc in northern Baja California. A substantial late Miocene drop in regional base level (relative sea level) is best attributed to regional uplift caused by the renewal of magmatic and thermal activity in northern Baja California, which has continued to the present day.

Contrasted terrace systems of the lower Moulouya valley as indicator of crustal deformation in NE Morocco

NASA Astrophysics Data System (ADS)

Rixhon, Gilles; Bartz, Melanie; El Ouahabi, Meriam; Szemkus, Nina; Brueckner, Helmut

2016-04-01

The Moulouya river has the largest catchment in Morocco and drains an area which is characterized by active crustal deformation during the Late Cenozoic due to the convergence between the African and Eurasian plates. As yet, its Pleistocene terrace sequence remains poorly documented. Our study focuses on the lowermost reach of the river in NE Morocco, which drains the Triffa sedimentary basin directly upstream of the estuary. New field observations, measurements and sedimentological data reveal contrasted fluvial environments on either side of a newly identified thrust zone, which disrupts the whole sedimentary basin and is associated with N-S compressive shortening in this region (Barcos et al., 2014). Long-lasting fluvial aggradation, materialized by ≥37 m-thick stacked fill terraces, and the development of a well-preserved terrace staircase, with (at least) three Pleistocene terrace levels, occur in the footwall and the hanging wall of the thrust, respectively. Same as for the Pleistocene terrace sediments of the middle Moulouya, a recurrent sedimentary pattern, characterized by fining-upward sequences was observed in the studied terrace profiles. Assessing the rates of crustal deformation along this main thrust zone requires age estimations for these Pleistocene terrace deposits of the lower Moulouya on each side of the thrust. Samples for luminescence (OSL/IRSL), electron spin resonance (ESR, on quartz) and cosmogenic nuclide dating (26Al/10Be, burial dating) were collected in terrace deposits located both in the foot- and hanging walls. Sample preparation and analysis as well as age determination are in progress. The preliminary data mentioned above, soon to be completed by chronological data, agree well with morphometric indicators stating that the whole Moulouya catchment is at disequilibrium state (Barcos et al., 2014). This is confirmed by several knickpoints in its longitudinal profile. Late Cenozoic uplift associated with crustal shortening, which occurred in the lowermost reach of the river, may have both hindered profile rectification of the Moulouya and, at the same time, buffered the effects of long-term base-level changes due to eustatic sea-level variations. Reference: Barcos, L., Jabaloy, A., Azdimousa, A., Asebriy, L., Gómez-Ortiz, D., Rodríguez-Peces, M.J., Tejero, R., Pérez-Peña, J.V., 2014. Study of relief changes related to active doming in the eastern Moroccan Rif (Morocco) using geomorphological indices. J. African Earth Sci. 100, 493-509.

Volcanism at Hualca Hualca Volcano, Southern Peru

NASA Astrophysics Data System (ADS)

Burkett, B.

2005-12-01

Nevado Hualca Hualca (6025m), in southern Peru, is the northernmost edifice in a north-south trending chain of 3 volcanoes that includes Ampato and the active Sabancaya stratovolcano. The oldest in the chain and considered extinct, virtually no research exists about the history of this large volcano. The summit of the volcano shows deep incision by glaciation, which from aerial photographs appears unaffected by later volcanism. Its north slope, however, possesses numerous volcanic domes, extensive lava flows with distinct levees and transverse ridges, and pyroclastic flow deposits. Deposits on the northwestern slope of Hualca Hualca include breadcrust-rich block-and-ash flows (BAF), several dacite lava flows including one with an identifiable source dome about 15km from the summit, and a sequence of small pyroclastic flow deposits with minor associated tephra. Analyses of these deposits show a restricted range of compositions (63-68 wt% SiO2). The PF sequence has an upward decrease in SiO2 and basaltic andesite (56 wt% SiO2) inclusions occur in the uppermost PFs. Principal phenocrysts include plagioclase, biotite, hornblende, clinopyroxene, orthopyroxene, Fe-Ti oxides, and sphene. Fine grained, angular to sub-rounded magmatic enclaves occur within the breadcrust-rich BAF deposits and the youngest lava flow. They are characterized by randomly oriented acicular hornblende, lack of chilled margins, and a few voids indicative of a quench texture. Plagioclase crystals with "dusty" rims or cores present in most of the deposits suggest resorption caused by magma recharge. These features imply a stratified magma chamber subject to magma recharge events and mingling to produce the quench texture enclaves. Chemical analyses indicate that the volcanic products result from magma mixing processes; the basaltic andesite inclusions may represent the mafic end-member of the mixing process. The physical characteristics of the deposits and chemical analyses were compared with data from the 1990-98 eruptive episode of Sabancaya volcano. Quench-texture enclaves and dusty-rimmed plagioclase exist in practically all of the Sabancaya deposits. The Sabancaya chemical analyses plot in line with those from the Hualca Hualca deposits; the Hualca Hualca samples are more evolved in almost every case except for the basaltic-andesite inclusions. This indicates a common formational history for the products of these two volcanoes and suggests a longer crustal storage time for the more evolved Hualca Hualca volcanics.

Late Neogene and Quaternary evolution of the northern Albemarle Embayment (mid-Atlantic continental margin, USA)

USGS Publications Warehouse

Mallinson, D.; Riggs, S.; Thieler, E.R.; Culver, S.; Farrell, K.; Foster, D.S.; Corbett, D.R.; Horton, B.; Wehmiller, J.F.

2005-01-01

Seismic surveys in the eastern Albemarle Sound, adjacent tributaries and the inner continental shelf define the regional geologic framework and provide insight into the sedimentary evolution of the northern North Carolina coastal system. Litho- and chronostratigraphic data are derived from eight drill sites on the Outer Banks barrier islands, and the Mobil #1 well in eastern Albemarle Sound. Within the study area, parallel-bedded, gently dipping Miocene beds occur at 95 to > 160 m below sea level (m bsl), and are overlain by a southward-thickening Pliocene unit characterized by steeply inclined, southward-prograding beds. The lower Pliocene unit consists of three seismic sequences. The 55–60 m thick Quaternary section unconformably overlies the Pliocene unit, and consists of 18 seismic sequences exhibiting numerous incised channel-fill facies. Shallow stratigraphy (< 40 m bsl) is dominated by complex fill patterns within the incised paleo-Roanoke River valley. Radiocarbon and amino-acid racemization (AAR) ages indicate that the valley-fill is latest Pleistocene to Holocene in age. At least six distinct valley-fill units are identified in the seismic data. Cores in the valley-fill contain a 3–6 m thick basal fluvial channel deposit that is overlain by a 15 m thick unit of interlaminated muds and sands of brackish water origin that exhibit increasing marine influence upwards. Organic materials within the interlaminated deposits have ages of 13–11 cal. ka. The interlaminated deposits within the valley are overlain by several units that comprise shallow marine sediments (bay-mouth and shoreface environments) that consist of silty, fine- to medium-grained sands containing open neritic foraminifera, suggesting that this area lacked a fronting barrier island system and was an open embayment from ∼10 ka to ∼4.5 ka. Seismic data show that initial infilling of the paleo-Roanoke River valley occurred from the north and west during the late Pleistocene and early Holocene. Later infilling occurred from the south and east and is characterized by a large shoal body (Colington Island and Shoals) and adjacent inlet fill. Establishment of a continuous barrier island system across the bay-mouth resulted in deposition of the latest phase of valley-fill, characterized by estuarine organic-rich muds.

Middle to Late Pleistocene multi-proxy record of environmental response to climate change from the Vienna Basin, Central Europe (Austria)

NASA Astrophysics Data System (ADS)

Salcher, Bernhard C.; Frank-Fellner, Christa; Lomax, Johanna; Preusser, Frank; Ottner, Franz; Scholger, Robert; Wagreich, Michael

2017-10-01

Tectonic basins can represent valuable archives of the environmental history. Presented here are the stratigraphy and multi-proxy analyses of two adjacent alluvial fans in the Quaternary active parts of the Vienna Basin, situated at the interface of the Atlantic, European continental and Mediterranean climate. Deposits comprise a sequence of coarse-grained fluvial deposits intercalated by laterally extensive horizons of pedogenically altered fine sediments. To establish palaeoenvironmental reconstructions, fine-grained sequences from a drill core and outcrop data were analysed according to its malacofauna, palaeopedology, susceptibility and sedimentology. The chronological framework is provided by 38 luminescence ages and supported by geomagnetic polarity investigations. Distinct warm periods each associated with a geomagnetic excursion, are recorded in three pedocomplexes formed during the Last Interglacial and two earlier interglacial periods, indicted to correlate with Marine Isotope Stage (MIS) 9 and MIS 11, respectively. Environmental conditions during the early last glacial period (MIS 5, c. 100-70 ka) are reconstructed from mollusc-shell rich overbank fines deposited along a former channel belt, covered by massive sheetflood deposits during MIS 2. Analysed warm phases suggest strong variations in humidity, ranging from steppe to forest dominated environments. The study presents one of the few numerically dated Middle Pleistocene multi-proxy records and one of the most comprehensive malacological datasets covering the early phases of last glacial period of continental Europe.

Enhancing genomic prediction with genome-wide association studies in multiparental maize populations

USDA-ARS?s Scientific Manuscript database

Genome-wide association mapping using dense marker sets has identified some nucleotide variants affecting complex traits which have been validated with fine-mapping and functional analysis. Many sequence variants associated with complex traits in maize have small effects and low repeatability, howev...

Two examples of subaqueously welded ash-flow tuffs: the Visean of southern Vosges (France) and the Upper Cretaceous of northern Anatolia (Turkey)

NASA Astrophysics Data System (ADS)

Schneider, Jean-Luc; Fourquin, Claude; Paicheler, Jean-Claude

1992-02-01

Pyroclastic deposits interpreted as subaqueous ash-flow tuff have been recognized within Archean to Recent marine and lacustrine sequences. Several authors proposed a high-temperature emplacement for some of these tuffs. However, the subaqueous welding of pyroclastic deposits remains controversial. The Visean marine volcaniclastic formations of southern Vosges (France) contain several layers of rhyolitic and rhyodacitic ash-flow tuff. These deposits include, from proximal to distal settings, breccia, lapilli and fine-ash tuff. The breccia and lapilli tuff are partly welded, as indicated by the presence of fiamme, fluidal and axiolitic structures. The lapilli tuff form idealized sections with a lower, coarse and welded unit and an upper, bedded and unwelded fine-ash tuff. Sedimentary structures suggest that the fine-ash tuff units were deposited by turbidity currents. Welded breccias, interbedded in a thick submarine volcanic complex, indicate the close proximity of the volcanic source. The lapilli and fine-ash tuff are interbedded in a thick marine sequence composed of alternating sandstones and shales. Presence of a marine stenohaline fauna and sedimentary structures attest to a marine depositional environment below storm-wave base. In northern Anatolia, thick massive sequences of rhyodacitic crystal tuff are interbedded with the Upper Cretaceous marine turbidites of the Mudurnu basin. Some of these tuffs are welded. As in southern Vosges, partial welding is attested by the presence of fiamme and fluidal structures. The latter are frequent in the fresh vitric matrix. These tuff units contain a high proportion of vitroclasis, and were emplaced by ash flows. Welded tuff units are associated with non-welded crystal tuff, and contain abundant bioclasts which indicate mixing with water during flowage. At the base, basaltic breccia beds are associated with micritic beds containing a marine fauna. The welded and non-welded tuff sequences are interbedded in an alternation of limestones and marls. These limestones are rich in pelagic microfossils. The evidence above strongly suggest that in both examples, tuff beds are partly welded and were emplaced at high temperature by subaqueous ash flows in a permanent marine environment. The sources of the pyroclastic material are unknown in both cases. We propose that the ash flows were produced during submarine fissure eruptions. Such eruptions could produce non-turbulent flows which were insulated by a steam carapace before deposition and welding. The welded ash-flow tuff deposits of southern Vosges and northern Anatolia give strong evidence for existence of subaqueous welding.

Next-Generation Sequencing of Microbial Communities in the Athabasca River and Its Tributaries in Relation to Oil Sands Mining Activities

PubMed Central

Yergeau, Etienne; Lawrence, John R.; Sanschagrin, Sylvie; Waiser, Marley J.; Korber, Darren R.

2012-01-01

The Athabasca oil sands deposit is the largest reservoir of crude bitumen in the world. Recently, the soaring demand for oil and the availability of modern bitumen extraction technology have heightened exploitation of this reservoir and the potential unintended consequences of pollution in the Athabasca River. The main objective of the present study was to evaluate the potential impacts of oil sands mining on neighboring aquatic microbial community structure. Microbial communities were sampled from sediments in the Athabasca River and its tributaries as well as in oil sands tailings ponds. Bacterial and archaeal 16S rRNA genes were amplified and sequenced using next-generation sequencing technology (454 and Ion Torrent). Sediments were also analyzed for a variety of chemical and physical characteristics. Microbial communities in the fine tailings of the tailings ponds were strikingly distinct from those in the Athabasca River and tributary sediments. Microbial communities in sediments taken close to tailings ponds were more similar to those in the fine tailings of the tailings ponds than to the ones from sediments further away. Additionally, bacterial diversity was significantly lower in tailings pond sediments. Several taxonomic groups of Bacteria and Archaea showed significant correlations with the concentrations of different contaminants, highlighting their potential as bioindicators. We also extensively validated Ion Torrent sequencing in the context of environmental studies by comparing Ion Torrent and 454 data sets and by analyzing control samples. PMID:22923391

In-situ monitoring of deformation of clayey and volcanic sequences in the lacustrine plain of Iztapalapa, Mexico City

NASA Astrophysics Data System (ADS)

Carreon-Freyre, D.; Cerca, M.; Barrientos, B.; Gutierrez, R.; Blancas, D.

2012-12-01

Major cities of Central Mexico with lowering of land elevation problems are located in inter-volcanic and fault bounded basins within the central Trans-Mexican Volcanic Belt (TMVB). The most representative and studied case of ground deformation is Mexico City, where the Iztapalapa Municipality presents the highest population density. This area is located over the geological contact between the "Sierra de Santa Catarina" volcanic range and a lacustrine plain. Filling of lacustrine basins includes silty and clayey sediments as well as pyroclastic deposits (coarse and fine grained) and volcanic rocks layers. We used Ground Penetrating Radar (GPR) and MASW prospection to evaluate contrasts in the physical properties of fine grained soils and identify geometry of the deformational features and implemented a mechanical system for in situ monitoring in fractured sites. Deformational features in this basin reflect an interplay between the geological history (depositional conditions), load history, seismic activity, and faulting. Plastic mechanical behaviour predominates in these clayey sediments and differential deformation locally triggers brittle fracturing and/or subsidence of the surface. In this work we present the results of monitoring and characterization of ground deformation and fracturing in different sequences, our results show a dynamic interplay between the mechanisms of ground fracturing and the stress history of sedimentary sequences. Relating the mechanical behaviour of the studied sequences with variations of physical and geological properties should be taken into account to estimate land level lowering and risk of fracturing for urban development planning.

A Fine Physical Map of the Rice Chromosome 4

PubMed Central

Zhao, Qiang; Zhang, Yu; Cheng, Zhukuan; Chen, Mingsheng; Wang, Shengyue; Feng, Qi; Huang, Yucheng; Li, Ying; Tang, Yesheng; Zhou, Bo; Chen, Zhehua; Yu, Shuliang; Zhu, Jingjie; Hu, Xin; Mu, Jie; Ying, Kai; Hao, Pei; Zhang, Lei; Lu, Yiqi; Zhang, Lei S.; Liu, Yilei; Yu, Zhen; Fan, Danlin; Weng, Qijun; Chen, Ling; Lu, Tingting; Liu, Xiaohui; Jia, Peixin; Sun, Tongguo; Wu, Yongrui; Zhang, Yujun; Lu, Ying; Li, Can; Wang, Rong; Lei, Haiyan; Li, Tao; Hu, Hao; Wu, Mei; Zhang, Runquan; Guan, Jianping; Zhu, Jia; Fu, Gang; Gu, Minghong; Hong, Guofan; Xue, Yongbiao; Wing, Rod; Jiang, Jiming; Han, Bin

2002-01-01

As part of an international effort to completely sequence the rice genome, we have produced a fine bacterial artificial chromosome (BAC)-based physical map of the Oryza sativa japonica Nipponbare chromosome 4 through an integration of 114 sequenced BAC clones from a taxonomically related subspecies O. sativa indica Guangluai 4 and 182 RFLP and 407 expressed sequence tag (EST) markers with the fingerprinted data of the Nipponbare genome. The map consists of 11 contigs with a total length of 34.5 Mb covering 94% of the estimated chromosome size (36.8 Mb). BAC clones corresponding to telomeres, as well as to the centromere position, were determined by BAC-pachytene chromosome fluorescence in situ hybridization (FISH). This gave rise to an estimated length ratio of 5.13 for the long arm and 2.9 for the short arm (on the basis of the physical map), which indicates that the short arm is a highly condensed one. The FISH analysis and physical mapping also showed that the short arm and the pericentromeric region of the long arm are rich in heterochromatin, which occupied 45% of the chromosome, indicating that this chromosome is likely very difficult to sequence. To our knowledge, this map provides the first example of a rapid and reliable physical mapping on the basis of the integration of the data from two taxonomically related subspecies. [The following individuals and institutions kindly provided reagents, samples, or unpublished information as indicated in the paper: S. McCouch, T. Sasaki, and Monsanto.] PMID:11997348

Comparative fine mapping of the Wax 1 (W1) locus in hexaploid wheat.

PubMed

Lu, Ping; Qin, Jinxia; Wang, Guoxin; Wang, Lili; Wang, Zhenzhong; Wu, Qiuhong; Xie, Jingzhong; Liang, Yong; Wang, Yong; Zhang, Deyun; Sun, Qixin; Liu, Zhiyong

2015-08-01

By applying comparative genomics analyses, a high-density genetic linkage map of the Wax 1 ( W1 ) locus was constructed as a framework for map-based cloning. Glaucousness is described as the scattering effect of visible light from wax deposited on the cuticle of plant aerial organs. In wheat, the wax on leaves and stems is mainly controlled by two sets of genes: glaucousness loci (W1 and W2) and non-glaucousness loci (Iw1 and Iw2). Bulked segregant analysis (BSA) and simple sequence repeat (SSR) mapping showed that Wax1 (W1) is located on chromosome arm 2BS between markers Xgwm210 and Xbarc35. By applying comparative genomics analyses, colinearity genomic regions of the W1 locus on wheat 2BS were identified in Brachypodium distachyon chromosome 5, rice chromosome 4 and sorghum chromosome 6, respectively. Four STS markers were developed using the Triticum aestivum cv. Chinese Spring 454 contig sequences and the International Wheat Genome Sequencing Consortium (IWGSC) survey sequences. W1 was mapped into a 0.93 cM genetic interval flanked by markers XWGGC3197 and XWGGC2484, which has synteny with genomic regions of 56.5 kb in Brachypodium, 390 kb in rice and 31.8 kb in sorghum. The fine genetic map can serve as a framework for chromosome landing, physical mapping and map-based cloning of the W1 in wheat.

Rational Diversification of a Promoter Providing Fine-Tuned Expression and Orthogonal Regulation for Synthetic Biology

PubMed Central

Blount, Benjamin A.; Weenink, Tim; Vasylechko, Serge; Ellis, Tom

2012-01-01

Yeast is an ideal organism for the development and application of synthetic biology, yet there remain relatively few well-characterised biological parts suitable for precise engineering of this chassis. In order to address this current need, we present here a strategy that takes a single biological part, a promoter, and re-engineers it to produce a fine-graded output range promoter library and new regulated promoters desirable for orthogonal synthetic biology applications. A highly constitutive Saccharomyces cerevisiae promoter, PFY1p, was identified by bioinformatic approaches, characterised in vivo and diversified at its core sequence to create a 36-member promoter library. TetR regulation was introduced into PFY1p to create a synthetic inducible promoter (iPFY1p) that functions in an inverter device. Orthogonal and scalable regulation of synthetic promoters was then demonstrated for the first time using customisable Transcription Activator-Like Effectors (TALEs) modified and designed to act as orthogonal repressors for specific PFY1-based promoters. The ability to diversify a promoter at its core sequences and then independently target Transcription Activator-Like Orthogonal Repressors (TALORs) to virtually any of these sequences shows great promise toward the design and construction of future synthetic gene networks that encode complex “multi-wire” logic functions. PMID:22442681

Rational diversification of a promoter providing fine-tuned expression and orthogonal regulation for synthetic biology.

PubMed

Blount, Benjamin A; Weenink, Tim; Vasylechko, Serge; Ellis, Tom

2012-01-01

Yeast is an ideal organism for the development and application of synthetic biology, yet there remain relatively few well-characterised biological parts suitable for precise engineering of this chassis. In order to address this current need, we present here a strategy that takes a single biological part, a promoter, and re-engineers it to produce a fine-graded output range promoter library and new regulated promoters desirable for orthogonal synthetic biology applications. A highly constitutive Saccharomyces cerevisiae promoter, PFY1p, was identified by bioinformatic approaches, characterised in vivo and diversified at its core sequence to create a 36-member promoter library. TetR regulation was introduced into PFY1p to create a synthetic inducible promoter (iPFY1p) that functions in an inverter device. Orthogonal and scalable regulation of synthetic promoters was then demonstrated for the first time using customisable Transcription Activator-Like Effectors (TALEs) modified and designed to act as orthogonal repressors for specific PFY1-based promoters. The ability to diversify a promoter at its core sequences and then independently target Transcription Activator-Like Orthogonal Repressors (TALORs) to virtually any of these sequences shows great promise toward the design and construction of future synthetic gene networks that encode complex "multi-wire" logic functions.

Upper Cretaceous ramp limestones from the Sorrento Peninsula (southern Apennines, Italy): micro- and macrofossil associations and their significance in the depositional sequences

NASA Astrophysics Data System (ADS)

Carannante, G.; Ruberti, D.; Sirna, M.

2000-04-01

The Upper Cretaceous limestones of the Sorrento Peninsula are primarily characterized by wackestone/packstone with benthic foraminifers, thaumatoporellaceans and Aeolisaccus sp. and by rudist floatstones. Rudists in growth position are rare; most of them appear toppled and locally oriented but not reworked. In some cases they form small bouquets no more than 30 cm thick. The successions analyzed in the Sorrento Peninsula encompass a variety of facies representative of inner shelf environments in a ramp-like depositional setting. On the basis of lithologic and sedimentologic characteristics and on a qualitative analysis of the biofacies, three major facies associations have been recognized corresponding to: (a) intertidal silty-sand flats and shallow lagoons; (b) subtidal mobile foraminiferal sand sheets; (c) subtidal rudist dwelt sand plain. In the lower part of the successions periodic (more or less prolonged) emersions (subaqueous with fresh/brackish waters or subaerial exposure) are documented. The upper part of each succession lacks any emersion evidence; submarine exposure surfaces are testified by firmground-related features. The periodic influence of high-energy regimes (some storm-related events) is documented by wave- and cross-laminations, HCS and the lack of fine sediments. Lithofacies are arranged in depositional cycles that may correspond to individual beds. The boundaries of the depositional cycles show evidence of subaerial or submarine exposures. The nature and position of these discontinuity surfaces in the successions provide an important clue to interpretation in terms of both depositional environment and vertical evolution. The increase in thickness of the depositional cycles and the gradual change from peritidal/shallow-subtidal cycles to dominantly subtidal cycles, document an increase in the amount of accommodation space which resulted from a long-term rise in relative sea-level. A detailed study of benthic associations (micro- and macrofauna) has been carried out in order to identify accurately further signs of periodicity contained within the successions as a whole. These Upper Cretaceous limestones are abundantly fossiliferous with only a moderately diverse fauna. There are no significant differences in terms of species, the assemblages simply reflecting differences in abundance of the same species. Taphonomic studies of rudist-rich beds permit seven major shell-bed types to be distinguished. Six main foraminiferal assemblages have been detected, and the distribution and relative abundance of the species have been examined within the environments inferred through facies analysis. The taphonomic data and the foraminiferal assemblage abundance and diversity, have been compared with lithologic and sedimentologic data in order to elucidate their distribution within depositional cycles and throughout the successions. The successions show little up-section changes in lithology and in taxonomic composition of the foraminiferal assemblages. It is therefore difficult to establish a paleoenvironmental trend independent of the rudist shell concentrations, which do change up-section. We noticed an overall increase in thickness and abundance of the shell beds and a shift in types of shell concentration and in taxonomic composition. These characteristics, associated with the upward disappearance of emersion surfaces, the higher frequency of storm and/or wave intercalations, the increase in thickness of the depositional sequences and the gradual change from peritidal/shallow-subtidal cycles to dominantly subtidal cycles, document a general deepening-upward trend. More open water conditions with a depth between fairweather and storm wave-base became established as a result of relative sea-level rise and to a consequent increase in the available accommodation space.

34 CFR 645.13 - How are regular Upward Bound projects organized?

Code of Federal Regulations, 2013 CFR

2013-07-01

...) Regular Upward Bound projects— (1) Must provide participants with a summer instructional component that is...) May provide a summer bridge component to those Upward Bound participants who have graduated from... summer bridge component provides participants with services and activities, including college courses...

34 CFR 645.13 - How are regular Upward Bound projects organized?

Code of Federal Regulations, 2014 CFR

2014-07-01

...) Regular Upward Bound projects— (1) Must provide participants with a summer instructional component that is...) May provide a summer bridge component to those Upward Bound participants who have graduated from... summer bridge component provides participants with services and activities, including college courses...

Characteristics of M-component in rocket-triggered lightning and a discussion on its mechanism

NASA Astrophysics Data System (ADS)

Jiang, Rubin; Qie, Xiushu; Yang, Jing; Wang, Caixia; Zhao, Yang

2013-09-01

The current and electric field pulses associated with M-component following dart leader-return stroke sequences in negative rocket-triggered lightning flashes were analyzed in detail by using the data from Shandong Artificially Triggering Lightning Experiment, conducted from 2005 to 2010. For 63 M-components with current waveforms superimposed on the relatively steady continuing current, the geometric mean values of the peak current, duration, and charge transfer were 276 A, 1.21 ms, and 101 mC, respectively. The behaviors of the channel base current versus close electric field changes and the observation facts by different authors were carefully examined for investigation on mechanism of the M-component. A modified model based on Rakov's "two-wave" theory is proposed and confirms that the evolution of M-component through the lightning channel involves a downward wave transferring negative charge from the upper to the lower channel and an upward wave draining the charge transported by the downward wave. The upward wave serves to deplete the negative charge by the downward wave at its interface and makes the charge density of the channel beneath the interface layer to be roughly zero. Such modified concept is recognized to be reasonable by the simulated results showing a good agreement between the calculated and the measured E-field waveforms.

Southern blotting.

PubMed

Brown, T

2001-05-01

Southern blotting is the transfer of DNA fragments from an electrophoresis gel to a membrane support, resulting in immobilization of the DNA fragments, so the membrane carries a semipermanent reproduction of the banding pattern of the gel. After immobilization, the DNA can be subjected to hybridization analysis, enabling bands with sequence similarity to a labeled probe to be identified. This unit describes Southern blotting via upward capillary transfer of DNA from an agarose gel onto a nylon or nitrocellulose membrane, and subsequent immobilization by UV irradiation (for nylon) or baking (for nitrocellulose). A Support Protocol describes how to calibrate a UV transilluminator for optimal UV irradiation of a nylon membrane. An alternate protocol details transfer using nylon membranes and an alkaline buffer, and is primarily used with positively charged nylon membranes. A second alternate protocol describes a transfer method based on a different transfer-stack setup. The traditional method of upward capillary transfer of DNA from gel to membrane has certain disadvantages, notably the fact that the gel can become crushed by the weighted filter papers and paper towels that are laid on top of it. This slows down the blotting process and may reduce the amount of DNA that can be transferred. The downward capillary method described in the second alternate protocol is therefore more rapid and can result in more complete transfer.

Seismic-sequence stratigraphy and geologic structure of the Floridan aquifer system near "Boulder Zone" deep wells in Miami-Dade County, Florida

USGS Publications Warehouse

Cunningham, Kevin J.

2015-01-01

In addition to the preceding seismic-reflection analysis, interpretation of geophysical well log data from four effluent injection wells at the North District “Boulder Zone” Well Field delineated a narrow karst collapse structure beneath the injection facility that extends upward about 900 ft from the top of the Boulder Zone to about 125 ft above the top of the uppermost major permeable zone of the Lower Floridan aquifer. No karst collapse structures were identified in the seismic-reflection profiles acquired near the North District “Boulder Zone” Well Field. However, karst collapse structures at the level of the lowermost major permeable zone of the Lower Floridan aquifer at the South District “Boulder Zone” Well Field are present at three locations, as indicated by seismic-reflection data acquired in the C–1 Canal bordering the south side of the injection facility. Results from the North District “Boulder Zone” Well Field well data indicate that a plausible hydraulic connection between faults and stratiform permeability zones may contribute to the upward transport of effluent, terminating above the base of the deepest U.S. Environmental Protection Agency designated underground source of drinking water at the North District “Boulder Zone” Well Field.

Northern Victoria Land (western Ross Sea-Antarctica): inner shelf fine sedimentation

NASA Astrophysics Data System (ADS)

Colizza, E.; Finocchiaro, F.; Ivaldi, R.; Pittà, A.; Tolotti, R.; Brambati, A.

2003-04-01

The Holocene sedimentation conditions are represented, in the western Ross Sea, by diatomaceous ooze in the uppermost part of sedimentary sequences, while diamicton deposited during Last Glacial Maximum are the basal unit of most cores. Thick layer (> 2 m) of diatomaceous ooze were sampled in the northern Joides Basin and into Granite Harbour. In Drygalski Ice Tongue area and along the coasts of northern Victoria Land, prevails coarse sedimentation, due to seaward flowing of large outlet glacier that drain the Transantarctic Mountain. During 1998-99 and 2001-02 PNRA antarctic cruises, favourable sea ice conditions, has allowed to sample inner shelf area, both in Wood Bay and south of Drygalski ice tongue (Nordenskjold basin). In both sites fine laminated diatomaceous mud are present. Preliminary seismostratigraphy and sedimentological data are here reported. This is the first note of new sites of fine sedimentation in the Ross Sea inner shelf.

Building of tropical beach ridges, northeastern Queensland, Australia: Cyclone inundation and aeolian decoration

NASA Astrophysics Data System (ADS)

Tamura, Toru; Nicholas, William; Brooke, Brendan; Oliver, Thomas

2016-04-01

Processes associated with tropical cyclones are thought responsible for building coarse sand beach ridges along the northeastern Queensland coast, Australia. While these ridges are expected to be geological records of the past cyclone, they question the general consensus of the aeolian genesis of sandy beach ridges. To explore the ridge-forming process, we carried out the GPR survey, auger drilling, pit excavation, grain-size analysis, and OSL dating for coarse sand beach ridges at the Cowley Beach, northeastern Queensland. The Cowley Beach is a mesotidal beach characterized by a low-tide terrace and steep beach face. Ten beach ridges are recognized along the survey transect that extends 700 m inland from the shore. 37 OSL ages are younger seawards, indicating the seaward accretion of the ridge sequence over the last 2700 years. The highest ridge is +5.1 m high above AHD (Australian Height Datum). Two GPR units are bounded by a groundwater surface at c. +1.5 m AHD. The upper unit is characterized by horizontal to hummocky reflectors punctuated by seaward dipping truncation surfaces. These reflectors in places form dome-like structure that appears to be the nucleus of a beach ridge. The shape and level (+2.5 m AHD) of the dome are similar to those of the present swash berm. The lower unit shows a sequence of reflectors that dip at an angle of present beach face. The sequence is dissected by truncation surfaces, some of which are continuous to those in the upper unit. Coarse sand mainly forms beach ridge deposits below +4.0 m AHD, while a few higher ridges have an upward fining layer composed of medium sand above +4.0 m, which is finer than aeolian ripples found on the backshore during the survey. In addition, pumice gravel horizons underlie the examined ridge crests. The sequence of seaward dipping reflectors indicates that the Cowley Beach, like other many sandy beaches, has prograded during onshore sand accretion by fairweather waves and has been eroded by storms waves. It is evident that increased water level and high waves associated with tropical cyclones are responsible for ridge building between +2.5 and +4.0 m AHD. However, astronomical tide should be critical rather than rare, intense cyclones for frequent coastal inundations up to +4.0 m AHD, just 1.5 m higher than the high-tide swash limit. The medium-grained sand layer on a few beach ridges higher than +4.0 m AHD can be accounted for by aeolian origin, but pumice gravels indicate the contribution of cyclone inundation. The building process of the ridges at Cowley Beach is thus most likely a mixture of fairweather swash and cyclone inundation modulated by tides, and aeolian processes during cyclonic and non-cyclonic conditions. For the reconstruction of the past cyclone based on these ridges, the roles of higher astronomical tides and aeolian processes should be taken into account.

Upward trend in vehicle-miles resumed during 2009 : a time series analysis

DOT National Transportation Integrated Search

2010-04-01

After a 2-year interruption to a long-term upward trend, the : number of vehicle-miles traveled (VMT) on the Nations highways : appears to have resumed a pattern of upward growth in : 2009. While VMT rises and falls seasonally, the years 2007 : an...

Physiology, anatomy, and plasticity of the cerebral cortex in relation to musical instrument performance

NASA Astrophysics Data System (ADS)

Tramo, Mark Jude

2004-05-01

The acquisition and maintenance of fine-motor skills underlying musical instrument performance rely on the development, integration, and plasticity of neural systems localized within specific subregions of the cerebral cortex. Cortical representations of a motor sequence, such as a sequence of finger movements along the keys of a saxophone, take shape before the figure sequence occurs. The temporal pattern and spatial coordinates are computed by networks of neurons before and during the movements. When a finger sequence is practiced over and over, performance gets faster and more accurate, probably because cortical neurons generating the sequence increase in spatial extent, their electrical discharges become more synchronous, or both. By combining experimental methods such as single- and multi-neuron recordings, focal stimulation, microanatomical tracers, gross morphometry, evoked potentials, and functional imaging in humans and nonhuman primates, neuroscientists are gaining insights into the cortical physiology, anatomy, and plasticity of musical instrument performance.

Pyroclast/snow interactions and thermally driven slurry formation. Part 2: Experiments and theoretical extension to polydisperse tephra

USGS Publications Warehouse

Walder, J.S.

2000-01-01

Erosion of snow by pyroclastic flows and surges presumably involves mechanical scour, but there may be thermally driven phenomena involved as well. To investigate this possibility, layers of hot (up to 400??C), uniformly sized, fine- to medium-grained sand were emplaced vertically onto finely shaved ice ('snow'); thus there was no relative shear motion between sand and snow and no purely mechanical scour. In some cases large vapor bubbles, commonly more than 10 mm across, rose through the sand layer, burst at the surface, and caused complete convective overturn of the sand, which then scoured and mixed with snow and transformed into a slurry. In other cases no bubbling occurred and the sand passively melted its way downward into the snow as a wetting front moved upward into the sand. A continuum of behaviors between these two cases was observed. Vigorous bubbling and convection were generally favored by high temperature, small grain size, and small layer thickness. A physically based theory of heat- and mass transfer at the pyroclast/snow interface, developed in Part 1 of this paper, does a good job of explaining the observations as a manifestation of unstable vapor-driven fluidization. The theory, when extrapolated to the behavior of actual, poorly sorted pyroclastic flow sediments, leads to the prediction that the observed 'thermal-scour' phenomenon should also occur for many real pyroclastic flows passing over snow. 'Thermal scour' is therefore likely to be involved in the generation of lahars.

Flux rope breaking and formation of a rotating blowout jet

NASA Astrophysics Data System (ADS)

Joshi, Navin Chandra; Nishizuka, Naoto; Filippov, Boris; Magara, Tetsuya; Tlatov, Andrey G.

2018-05-01

We analysed a small flux rope eruption converted into a helical blowout jet in a fan-spine configuration using multiwavelength observations taken by Solar Dynamics Observatory, which occurred near the limb on 2016 January 9. In our study, first, we estimated the fan-spine magnetic configuration with the potential-field calculation and found a sinistral small filament inside it. The filament along with the flux rope erupted upwards and interacted with the surrounding fan-spine magnetic configuration, where the flux rope breaks in the middle section. We observed compact brightening, flare ribbons, and post-flare loops underneath the erupting filament. The northern section of the flux rope reconnected with the surrounding positive polarity, while the southern section straightened. Next, we observed the untwisting motion of the southern leg, which was transformed into a rotating helical blowout jet. The sign of the helicity of the mini-filament matches the one of the rotating jets. This is consistent with recent jet models presented by Adams et al. and Sterling et al. We focused on the fine thread structure of the rotating jet and traced three blobs with the speed of 60-120 km s- 1, while the radial speed of the jet is ˜400 km s- 1. The untwisting motion of the jet accelerated plasma upwards along the collimated outer spine field lines, and it finally evolved into a narrow coronal mass ejection at the height of ˜9Rsun. On the basis of detailed analysis, we discussed clear evidence of the scenario of the breaking of the flux rope and the formation of the helical blowout jet in the fan-spine magnetic configuration.

Record of continental to marine transition from the Mesoproterozoic Ampani basin, Central India: An exercise of process-based sedimentology in a structurally deformed basin

NASA Astrophysics Data System (ADS)

Chakraborty, Partha Pratim; Saha, Subhojit; Das, Kaushik

2017-08-01

The Mesoproterozoic Ampani Group of rocks, a structurally deformed sedimentary package hosted within the Bastar Craton in central India, was studied for process-based facies and paleoenvironmental analyses. Outcrop mapping on 1:1500 scale, deconvolution of deformation pattern, and process-based facies analyses have led to the identification of fifteen facies types, clubbed under four facies associations. A range of paleoenvironmental settings varying from continental fluvial to distal marine shelf is inferred. Deductive paleohydrology revealed poorly-efficient 'dirty river' character for the Ampani River system with low water discharge. However, at times of catastrophic sheet floods release of sediments trapped at the river mouth in form of hyperpycnal underflows triggered formation of river mouth delta. Reworking of delta front sediment in wave-dominated coastline resulted development of beach-foreshore and shoreface (proximal to distal). Variation in the relative proportion of bar and interbar products within the shoreface successions exposed at different studied sections is interpreted as signature of relative bathymetric variation. The pro-deltaic Ampani shelf was storm infested. Tectonic perturbance in the basin hinterland in course of Ampani sedimentation is inferred from occurrence of a disparately thick lobate high-density flow deposit towards the top of shoreface succession and increase in feldspar content upward within the shoreface succession. Addition of detritus from a ∼1600 Ma Mesoproterozoic provenance in upper part of shoreface also strengthen the contention. Deconvolution of deformation pattern and delineation of environmental products ranging between continental and deep marine allowed us to infer the Ampani sediment package as fining-upward in character evolved in a transgressive mode.

Disturbance of the inclined inserting-type sand fence to wind-sand flow fields and its sand control characteristics

NASA Astrophysics Data System (ADS)

Cheng, Jian-jun; Lei, Jia-qiang; Li, Sheng-yu; Wang, Hai-feng

2016-06-01

The inclined inserting-type sand fence is a novel sand retaining wall adopted along the Lanxin High-Speed Railway II in Xinjiang for controlling and blocking sand movement. To verify the effectiveness of the new fence structure for sand prevention, a wind tunnel test was used for flow field test simulation of the sand fence. The results indicate that the inclined inserting-type sand fence was able to deflect the flow of the sand and was able to easily form an upward slant acceleration zone on the leeward side of the sand fence. As shown by the percentage change in sand collection rates on the windward side and the leeward side of the sand fence, the sand flux per unit area at 4 m height in the slant upward direction increased on the leeward side of the inclined inserting-type sand fence. By comparing the flow fields, this site is an acceleration zone, which also reaffirms the correspondence of wind-sand flow fields with the spatial distribution characteristic of the wind-carried sand motion. The field sand collection data indicates that under the effects of the inclined inserting-type sand fence, the sandy air currents passing in front and behind the sand fence not only changed in quality, but the grain composition and particle size also significantly changed, suggesting that the inclined inserting-type sand fence has a sorting and filtering effect on the sandy air currents that passed through. The fence retained coarse particulates on the windward side and fine particulates within the shade of the wind on the leeward side.

Geologic columns for the ICDP-USGS Eyreville A and B cores, Chesapeake Bay impact structure: Sediment-clast breccias, 1096 to 444 m depth

USGS Publications Warehouse

Edwards, L.E.; Powars, D.S.; Gohn, G.S.; Dypvik, H.

2009-01-01

The Eyreville A and B cores, recovered from the "moat" of the Chesapeake Bay impact structure, provide a thick section of sediment-clast breccias and minor stratified sediments from 1095.74 to 443.90 m. This paper discusses the components of these breccias, presents a geologic column and descriptive lithologic framework for them, and formalizes the Exmore Formation. From 1095.74 to ??867 m, the cores consist of nonmarine sediment boulders and sand (rare blocks up to 15.3 m intersected diameter). A sharp contact in both cores at ??867 m marks the lowest clayey, silty, glauconitic quartz sand that constitutes the base of the Exmore Formation and its lower diamicton member. Here, material derived from the upper sediment target layers, as well as some impact ejecta, occurs. The block-dominated member of the Exmore Formation, from ??855-618.23 m, consists of nonmarine sediment blocks and boulders (up to 45.5 m) that are juxtaposed complexly. Blocks of oxidized clay are an important component. Above 618.23 m, which is the base of the informal upper diamicton member of the Exmore Formation, the glauconitic matrix is a consistent component in diamicton layers between nonmarine sediment clasts that decrease in size upward in the section. Crystalline-rock clasts are not randomly distributed but rather form local concentrations. The upper part of the Exmore Formation consists of crudely fining-upward sandy packages capped by laminated silt and clay. The overlap interval of Eyreville A and B (940-??760 m) allows recognition of local similarities and differences in the breccias. ?? 2009 The Geological Society of America.

Early pleistocene sediments at Great Blakenham, Suffolk, England

NASA Astrophysics Data System (ADS)

Gibbard, P. L.; Allen, P.; Field, M. H.; Hallam, D. F.

Detailed investigation of a fine sediment sequence, the College Farm Silty Clay Member, that overlies the Creeting Sands (Early Pleistocene) in Suffolk, is presented. The sedimentary sequence is thought to represent a freshwater pool accumulation in a small coastal embayment. Palaeobotanical investigation of the sediment indicates that it accumulated during the late temperate substage of a temperate (interglacial) event. The occurrence of Tsuga pollen, associated with abundant remains of the water fern Azolla tegeliensis indicate that the deposits are of Early Pleistocene age and are correlated with a later part of the Antian-Bramertonian Stage. Correlation with Tiglian TO substage in The Netherlands' sequence is most likely. The sediments' normal palaeomagnetic polarity reinforces the biostratigraphical correlation.

Mapping by sequencing in cotton (Gossypium hirsutum) line MD52ne identified candidate genes for fiber strength and its related quality attributes.

PubMed

Islam, Md S; Zeng, Linghe; Thyssen, Gregory N; Delhom, Christopher D; Kim, Hee Jin; Li, Ping; Fang, David D

2016-06-01

Three QTL regions controlling three fiber quality traits were validated and further fine-mapped with 27 new single nucleotide polymorphism (SNP) markers. Transcriptome analysis suggests that receptor-like kinases found within the validated QTLs are potential candidate genes responsible for superior fiber strength in cotton line MD52ne. Fiber strength, length, maturity and fineness determine the market value of cotton fibers and the quality of spun yarn. Cotton fiber strength has been recognized as a critical quality attribute in the modern textile industry. Fine mapping along with quantitative trait loci (QTL) validation and candidate gene prediction can uncover the genetic and molecular basis of fiber quality traits. Four previously-identified QTLs (qFBS-c3, qSFI-c14, qUHML-c14 and qUHML-c24) related to fiber bundle strength, short fiber index and fiber length, respectively, were validated using an F3 population that originated from a cross of MD90ne × MD52ne. A group of 27 new SNP markers generated from mapping-by-sequencing (MBS) were placed in QTL regions to improve and validate earlier maps. Our refined QTL regions spanned 4.4, 1.8 and 3.7 Mb of physical distance in the Gossypium raimondii reference genome. We performed RNA sequencing (RNA-seq) of 15 and 20 days post-anthesis fiber cells from MD52ne and MD90ne and aligned reads to the G. raimondii genome. The QTL regions contained 21 significantly differentially expressed genes (DEGs) between the two near-isogenic parental lines. SNPs that result in non-synonymous substitutions to amino acid sequences of annotated genes were identified within these DEGs, and mapped. Taken together, transcriptome and amino acid mutation analysis indicate that receptor-like kinase pathway genes are likely candidates for superior fiber strength and length in MD52ne. MBS along with RNA-seq demonstrated a powerful strategy to elucidate candidate genes for the QTLs that control complex traits in a complex genome like tetraploid upland cotton.

Overexpression of Brassica rapa SHI-RELATED SEQUENCE genes suppresses growth and development in Arabidopsis thaliana.

PubMed

Hong, Joon Ki; Kim, Jin A; Kim, Jung Sun; Lee, Soo In; Koo, Bon Sung; Lee, Yeon-Hee

2012-08-01

S HI-R ELATED SEQUENCE (SRS) genes are plant-specific transcription factors containing a zinc-binding RING finger motif, which play a critical role in plant growth and development. We have characterized six SRS genes in Brassica rapa. Overexpression of the SRSs BrSTY1, BrSRS7, and BrLRP1 induced dwarf and compact plants, and significantly decreased primary root elongation and lateral root formation. Additionally, the transgenic plants had upward-curled leaves of narrow widths and with short petioles, and had shorter siliques and low fertility. In stems, hypocotyls, and styles, epidermal cell lengths were also significantly reduced in transgenic plants. RT-PCR analysis of transgenic plants revealed that BrSTY1, BrSRS7, and BrLRP1 regulate expression of several gibberellin (GA)- and auxin-related genes involved in morphogenesis in shoot apical regions. We conclude that BrSTY1, BrSRS7, and BrLRP1 regulate plant growth and development by regulating expression of GA- and auxin-related genes.

34 CFR 645.1 - What is the Upward Bound Program?

Code of Federal Regulations, 2010 CFR

2010-07-01

... participants the skills and motivation necessary to complete a program of secondary education and to enter and... the following three types of projects: (1) Regular Upward Bound projects. (2) Upward Bound Math and... Education Regulations of the Offices of the Department of Education (Continued) OFFICE OF POSTSECONDARY...

76 FR 43575 - Amendment of Class E Airspace; Staunton, VA

Federal Register 2010, 2011, 2012, 2013, 2014

2011-07-21

... airspace extending upward from 700 feet above the surface at Shenandoah Valley Regional Airport, Staunton... airspace extending upward from 700 feet above the surface to support new SIAPs developed at Shenandoah... E airspace areas extending upward from 700 feet or more above the surface of the earth...

Evaluating TRIO Programs: A Case Study of Upward Bound Directors and Staff

ERIC Educational Resources Information Center

Carr, Yolanda Regina

2013-01-01

For over four decades, Upward Bound programs have influenced students' aspirations and goals toward attending college, college enrollment, and overall educational achievement, providing a standard for successful college preparation for historically marginalized students. Although Upward Bound has helped many Americans prepare for and earn their…

A Theoretical Concept of Educational Upward Mobility

ERIC Educational Resources Information Center

Kupfer, Antonia

2012-01-01

This paper's topic is the educational upward mobility of members of the working class. It seeks to find out what makes educational success possible and aims to build a theory of educational upward mobility. Data have been collected through biographical-narrative interviews of Austrian graduates from working-class backgrounds. Their narratives have…

Confounding factors in using upward feedback to assess the quality of medical training: a systematic review.

PubMed

Zhou, Anli Yue; Baker, Paul

2014-01-01

Upward feedback is becoming more widely used in medical training as a means of quality control. Multiple biases exist, thus the accuracy of upward feedback is debatable. This study aims to identify factors that could influence upward feedback, especially in medical training. A systematic review using a structured search strategy was performed. Thirty-five databases were searched. Results were reviewed and relevant abstracts were shortlisted. All studies in English, both medical and non-medical literature, were included. A simple pro-forma was used initially to identify the pertinent areas of upward feedback, so that a focused pro-forma could be designed for data extraction. A total of 204 articles were reviewed. Most studies on upward feedback bias were evaluative studies and only covered Kirkpatrick level 1-reaction. Most studies evaluated trainers or training, were used for formative purposes and presented quantitative data. Accountability and confidentiality were the most common overt biases, whereas method of feedback was the most commonly implied bias within articles. Although different types of bias do exist, upward feedback does have a role in evaluating medical training. Accountability and confidentiality were the most common biases. Further research is required to evaluate which types of bias are associated with specific survey characteristics and which are potentially modifiable.

Impacts of the 2004 Indian ocean tsunami on the southwest coasts of Sri Lanka

USGS Publications Warehouse

Morton, Robert A.; Goff, John A.; Nichol, Scott L.

2007-01-01

The 2004 Indian Ocean tsunami caused major landscape changes along the southwest coasts of Sri Lanka that were controlled by the flow, natural topography and bathymetry, and anthropogenic modifications of the terrain. Landscape changes included substantial beach erosion and scouring of return-flow channels near the beach, and deposition of sand sheets across the narrow coastal plain. In many areas tsunami deposits also included abundant building rubble due to the extensive destruction of homes and businesses in areas of dense development. Trim lines and flow directions confirmed that shoreline orientation and wave refraction from embayments and rock-anchored headlands locally focused the flow and amplified the inundation. Tsunami deposits were 1 to 36 cm thick but most were less than 25 cm thick. Deposit thickness depended partly on antecedent topography. The deposits were composed of coarse to medium sand organized into a few sets of plane parallel laminae that exhibited overall upward fining and landward thinning trends.

Manipulating motions of targeted single cells in solution by an integrated double-ring magnetic tweezers imaging microscope.

PubMed

Wu, Meiling; Yadav, Rajeev; Pal, Nibedita; Lu, H Peter

2017-07-01

Controlling and manipulating living cell motions in solution hold a high promise in developing new biotechnology and biological science. Here, we developed a magnetic tweezers device that employs a combination of two permanent magnets in up-down double-ring configuration axially fitting with a microscopic objective, allowing a picoNewton (pN) bidirectional force and motion control on the sample beyond a single upward pulling direction. The experimental force calibration and magnetic field simulation using finite element method magnetics demonstrate that the designed magnetic tweezers covers a linear-combined pN force with positive-negative polarization changes in a tenability of sub-pN scale, which can be utilized to further achieve motion manipulation by shifting the force balance. We demonstrate an application of the up-down double-ring magnetic tweezers for single cell manipulation, showing that the cells with internalized paramagnetic beads can be selectively picked up and guided in a controlled fine motion.

Manipulating motions of targeted single cells in solution by an integrated double-ring magnetic tweezers imaging microscope

NASA Astrophysics Data System (ADS)

Wu, Meiling; Yadav, Rajeev; Pal, Nibedita; Lu, H. Peter

2017-07-01

Controlling and manipulating living cell motions in solution hold a high promise in developing new biotechnology and biological science. Here, we developed a magnetic tweezers device that employs a combination of two permanent magnets in up-down double-ring configuration axially fitting with a microscopic objective, allowing a picoNewton (pN) bidirectional force and motion control on the sample beyond a single upward pulling direction. The experimental force calibration and magnetic field simulation using finite element method magnetics demonstrate that the designed magnetic tweezers covers a linear-combined pN force with positive-negative polarization changes in a tenability of sub-pN scale, which can be utilized to further achieve motion manipulation by shifting the force balance. We demonstrate an application of the up-down double-ring magnetic tweezers for single cell manipulation, showing that the cells with internalized paramagnetic beads can be selectively picked up and guided in a controlled fine motion.

Thermal structure of the TTL and its relation to stratospheric-tropospheric exchange of water.

NASA Astrophysics Data System (ADS)

de La Torre Juárez, M.; Ao, C. O.; Schr\\O der, T. M.; Hermann, R.

2004-12-01

The annual cycle of the TTL fine scale thermal structure is described as captured by GPS radio occultation and the pressure levels of the ECMWF weather analysis. This annual cycle is compared to the annual cycle in water concentrations at the upper troposphere/lower stratosphere measured by HALOE. It is found that the saturation mixing ratios at the Cold Point Tropopause temperatures are consistent and sligthly below HALOE values with some temporal lag. This suggests that if dehydration mechanisms other than those associated with slow vertical asscent are working effectively, they must be counterbalanced by other hydration mechanisms. A comparison between saturation mixing ratios at the temperatures captured by GPS radio occultation and HALOE concentrations of water vapor show an annual cycle dominated by supersaturation in the boreal winter months, when the upward mass fluxes are larger, and subsaturation in the summer. The longitudinal dependence of these cycles is discussed and so is its possible implication for the seasonality of statospheric-tropospheric exchange of water.

Outcrop shapes for correlation of Lower Mississippian carbonates in western North America

DOE Office of Scientific and Technical Information (OSTI.GOV)

Haines, F.

1993-03-01

Examination of the sedimentary cycles in Mississippian carbonates in Iowa, Utah, Montana and Alberta shows a hierarchy of stratigraphic subdivisions: large sequences, cycles, rhythmic bands or marker beds, and couplets of laminated and dense beds. The 3 sequences shoal upward from dark mudstone to an oolitic or crinoidal cap beneath a disconformity. Sequence 1 (Horton Creek Member in Illinois, Upper Fitchville in Utah and Lower Banff oolite in Alberta) thins rapidly to fossiliferous limestone at a Waulsortian shelf margin on the southern edge of the Central Montana Trough. Sequence 2 (Hannibal-Chouteau in Missouri, Middle Banff in Alberta, lower Lodgepole cliffmore » in Montana and lower Chinese wall in Utah) thins at a shelf margin which is north-south in western Montana but swings east then northwest around an embayment in NW Montana and SW Alberta. Sequence 3 (Burlington-Keokuk in Iowa, Upper Banff and Pekisko in Alberta, and upper Lodgepole-massive lower Mission Canyon in Utah and Montana) marker beds lose their identity without a shelf margin in NW Montana and SW Alberta. Rhythmic bands, currently under study, demonstrate episodic deposition over large areas, band tops are sometimes bored, hardened and oxidized. Silty bands are used as marker beds. The S-4 marker (Dolby Creek) maintains a similar bed form despite facies changes. Laminated and dense limestone couplets are common in the basinal facies from Utah to Alberta and in the Chouteau formation of Missouri.« less

Lower Cretaceous paleo-Vertisols and sedimentary interrelationships in stacked alluvial sequences, Utah, USA

NASA Astrophysics Data System (ADS)

Joeckel, R. M.; Ludvigson, G. A.; Kirkland, J. I.

2017-11-01

The Yellow Cat Member of the Cedar Mountain Formation in Poison Strip, Utah, USA, consists of stacked, erosionally bounded alluvial sequences dominated by massive mudstones (lithofacies Fm) with paleo-Vertisols. Sediment bodies within these sequences grade vertically and laterally into each other at pedogenic boundaries, across which color, texture, and structures (sedimentary vs. pedogenic) change. Slickensides, unfilled (sealed) cracks, carbonate-filled cracks, and deeper cracks filled with sandstone; the latter features suggest thorough desiccation during aridification. Thin sandstones (Sms) in some sequences, typically as well as laminated to massive mudstones (Flm) with which they are interbedded in some cases, are interpreted as avulsion deposits. The termini of many beds of these lithofacies curve upward, parallel to nearby pedogenic slickensides, as the features we call ;turnups.; Turnups are overlain or surrounded by paleosols, but strata sheltered underneath beds with turnups retain primary sedimentary fabrics. Turnups were produced by movement along slickensides during pedogenesis, by differential compaction alongside pre-existing gilgai microhighs, or by a combination of both. Palustrine carbonates (lithofacies C) appear only in the highest or next-highest alluvial sequences, along with a deep paleo-Vertisol that exhibits partially preserved microrelief at the base of the overlying Poison Strip Member. The attributes of the Yellow Cat Member suggest comparatively low accommodation, slow accumulation, long hiatuses in clastic sedimentation, and substantial time intervals of subaerial exposure and pedogenesis; it appears to be distinct among the members of the Cedar Mountain Formation in these respects.

Frequency, predictors, and economic impact of upward dose adjustment of infliximab in managed care patients with rheumatoid arthritis.

PubMed

Ollendorf, Daniel A; Massarotti, Elena; Birbara, Charles; Burgess, Somali Misra

2005-06-01

To examine dosing patterns and costs among rheumatoid arthritis (RA) patients newly treated with infliximab in a large national health care claims database. Using data from a proprietary database of pharmacy and medical claims for 75 U.S. health plans, RA patients newly treated with infliximab between June 2000 and June 2002 were selected and assigned an .index date. based on the first infusion. A pretreatment period of 6 months was created; patients were also followed for a minimum of 6 months after the initial infusion. Follow-up was allowed to vary beyond this minimum 6 months in order to preserve all available patient data. A maintenance number of infliximab vials was determined as of the second infusion; patients with 1 subsequent increase in vials used or 2 intervals between infusions of <49 days were considered to have had an upward dose adjustment. Differences (i.e., between those with upward dose adjustment and those with no upward dose) in patient characteristics were examined using descriptive statistics. In addition, time to upward dose adjustment and factors influencing its likelihood were analyzed using Kaplan-Meier and Cox proportional hazards techniques. Finally, differences in RA-related and unrelated costs (medication, outpatient, inpatient, and total, expressed in 2003 dollars) were examined using Wilcoxon rank-sum tests and were also stratified by a number of patient characteristics found to differ between the 2 groups. A total of 1,236 patients met all study entry criteria and were included in these analyses. One or more upward dose adjustments were experienced by 61.7% (N=762) of patients during an average of 15 months of follow-up (median =13 months, range=6 to 31 months). The majority (63.3%) of upward dose adjustments were due to increases in the number of billed vials. Median time to upward dose adjustment was 254 days and declined steadily based on year of initiation (from 330 days in 2000 to 224 days in 2002). Factors significantly influencing upward dose adjustment included pretreatment use of leflunomide, comorbid Crohn.s disease, and pretreatment liver function testing. During followup, patients in the upward dose adjustment group used a mean (SD) of 30.28 (20.90) vials of infliximab, compared with 15.90 (14.28) among those not adjusting dose (P<0.001). Annualized (i.e., standardized to a 365-day rate) RA-related costs were higher by more than 50% among patients with upward dose adjustment (SD $22,283 [$20,517] versus $14,425 [$10,828] for those without upward dose adjustment; P<0.001); differences were driven almost entirely by the costs of infliximab itself ($16,336 [$9,490] versus $9,573 [$6,790], P<0.001). In a cohort of managed care members with RA, upward dose adjustment with infliximab was frequent and appeared to occur earlier in the drug therapy in 2002 compared with 2000. Upward dose adjustment was associated with significant increases in drug treatment costs; therefore, payers and providers should consider the impact of current dosing trends when monitoring the use of biologics for autoimmune diseases.

Environment and Climate Changes during the Holocene: Inferred from Sedimentary Record/Proxies of a Paleodelta Region, Southwest Coast of India

NASA Astrophysics Data System (ADS)

Allu, N. C.; Prakash, V.; Gautam, P. K.; Bera, S. K.

2014-12-01

This work explains the sedimentation history and environment and climate changes during the Holocene along the southwest coast of India. The area is characterized by various landforms such as lagoons, barrier islands, beach ridges, paleostrandlines, alluvial plains, marshy lands and flood plains. Paleodelta, located at the mouth of the modern Periyar River is an important geomorphic marker. A borehole of 40 m depth was drilled in the paleodelta and sediment samples were recovered at different depth intervals. Paleoclimate and paleo-environment were inferred based on geochronology, textural and geotechnical parameters, clay minerals, and pollen analysis results. The bottom of the borehole represents an age of ~ 12 ka BP. Sediments exhibit coarsening texture upwards of the borehole, with fine mud and peat intercalations at the bottom. Six litho facies - muddy sand, sand, sandy mud, silty sand, sandy silt, and mud - were recorded. Geotechnical properties comprising moisture content, organic carbon, plasticity index record high values, whereas low bulk density associated with a low critical shear stress, are recorded. An increase in illite and to a lesser degree smectite with concomitant decrease in kaolinite is observed. Sediment texture represents a major change of depositional environment from marine to fluvial sedimentary facies during the major sea level fall i.e., after 7 ka B.P. The present sea level attained during 4-5 ka B.P; major rise of sea level has taken place from 7-11 ka BP and regression during 7 - 5 ka B.P. These transgression and regression phases introduced the changes in the environment of deposition. The monsoon was dynamic and more intense after the major fall of sea level causing the fluctuations in the fluvial facies. Upward coarsening of grain size in the borehole indicates change in sediment deposition due to increased hydrodynamic conditions and strong fluvial action, which can be linked to marine regression. Geotechnical properties suggest textural changes and sedimentary facies. An upward increase in smectite and kaolinite and decreasing illite supports major fall in sea level and also the aridity. Pollen record of sediment strata supports the paleo-environment dominated by the presence of semi-evergreen type of mangrove plants during mid- to early-Holocene times.

Clockwise rotation of the Santa Marta massif and simultaneous Paleogene to Neogene deformation of the Plato-San Jorge and Cesar-Ranchería basins

NASA Astrophysics Data System (ADS)

Montes, Camilo; Guzman, Georgina; Bayona, German; Cardona, Agustin; Valencia, Victor; Jaramillo, Carlos

2010-10-01

A moderate amount of vertical-axis clockwise rotation of the Santa Marta massif (30°) explains as much as 115 km of extension (stretching of 1.75) along its trailing edge (Plato-San Jorge basin) and up to 56 km of simultaneous shortening with an angular shear of 0.57 along its leading edge (Perijá range). Extensional deformation is recorded in the 260 km-wide, fan-shaped Plato-San Jorge basin by a 2-8 km thick, shallowing-upward and almost entirely fine-grained, upper Eocene and younger sedimentary sequence. The simultaneous initiation of shortening in the Cesar-Ranchería basin is documented by Mesozoic strata placed on to lower Eocene syntectonic strata (Tabaco Formation and equivalents) along the northwest-verging, shallow dipping (9-12° to the southeast) and discrete Cerrejón thrust. First-order subsidence analysis in the Plato-San Jorge basin is consistent with crustal stretching values between 1.5 and 2, also predicted by the rigid-body rotation of the Santa Marta massif. The model predicts about 100 km of right-lateral displacement along the Oca fault and 45 km of left-lateral displacement along the Santa Marta-Bucaramanga fault. Clockwise rotation of a rigid Santa Marta massif, and simultaneous Paleogene opening of the Plato-San Jorge basin and emplacement of the Cerrejón thrust sheet would have resulted in the fragmentation of the Cordillera Central-Santa Marta massif province. New U/Pb ages (241 ± 3 Ma) on granitoid rocks from industry boreholes in the Plato-San Jorge basin confirm the presence of fragments of a now segmented, Late Permian to Early Triassic age, two-mica, granitic province that once spanned the Santa Marta massif to the northernmost Cordillera Central.

Holocene earthquake-triggered turbidites from the Saguenay (Eastern Canada) and Reloncavi (Chilean margin) fjords

NASA Astrophysics Data System (ADS)

St-Onge, Guillaume; Chapron, Emmanuel; Mulsow, Sandor; Salas, Marcos; Debret, Maxime; Foucher, Anthony; Mulder, Thierry; Desmet, Marc; Costa, Pedro; Ghaleb, Bassam; Locat, Jacques

2013-04-01

Fjords are unique archives of climatic and environmental changes, but also of natural hazards. They can preserve thick sedimentary sequences deposited under very high sediment accumulation rates, making them ideally suited to record historical and pre-historical sedimentological events such as major landslides, floods or earthquakes. In fact, by carefully characterizing and dating the sediments and by comparing the basin fill seismic stratigraphy and sedimentary records with historical events, it is possible to "calibrate" recent rapidly deposited layers such as turbidites with a trigger mechanism and extend these observations further back in time by using seismic reflection profiles and longer sediment cores. Here, we will compare earthquake-triggered turbidites in fjords from the Southern and Northern Hemispheres: the Saguenay (Eastern Canada) and Reloncavi fjords (southern Chilean margin). In both settings, we will first look at basin fill geometries and at the sedimentological properties of historical events before extending the records further back in time. In both fjords, several turbidites were associated with large magnitude historic and pre-historic earthquakes including the 1663 AD (M>7) earthquake in the Saguenay Fjord, and the 1960 (M 9.5), 1837 (M~8) and 1575 AD major Chilean subduction earthquakes in the Reloncavi Fjord. In addition, a sand layer with sea urchin fragments and the exoscopic characteristics typical of a tsunami deposit was observed immediately above the turbidite associated with the 1575 AD earthquake in the Reloncavi Fjord and supports both the chronology and the large magnitude of that historic earthquake. In both fjords, as well as in other recently recognized earthquake-triggered turbidites, the decimeter-to meter-thick normally-graded turbidites are characterized by a homogeneous, but slightly fining upward tail. Finally, new radiocarbon results will be presented and indicate that at least 19 earthquake-triggered turbidites were recorded in the Reloncavi Fjord during the last 7500 cal BP.

Earthquake-ponded sediments as a high-resolution archive of Anthropocene climate change on the Fuyun Fault (Xinjiang, China).

NASA Astrophysics Data System (ADS)

Chua, Stephen; Gouramanis, Chris; Etchebes, Marie; Klinger, Yann; Gao, Mingxing; Switzer, Adam; Tapponnier, Paul

2016-04-01

High-resolution, late-Holocene climate patterns in arid central Asia, in particular the behaviour of the Asian Monsoon and occurrences of precipitation events, are not yet fully understood. In particular, few high-resolution palaeoenvironmental and palaeoclimate studies are available from the Junggar-Altay region in the Xinjiang Province, northwestern China. This area is tectonically active and the last large earthquake (Mw 7.9) occurred along the Fuyun strike-slip fault in 1931, resulting in ˜6m of right-lateral movement. South of the epicentre at Karaxingar, this earthquake resulted in the construction of large scarp-bounded ponds (46o43'N, 89o55'E) now filled with sediment. Sediment samples were collected every centimetre at a two-meter deep trench where the main pond was the deepest. The majority of the AMS 14C ages of charcoal and plant fibre samples are modern (56±34 to 171±34 yr BP) with the exception of a few much older carbon (842±26 to 2017±26 yr BP) at the base of the trench. The post-1931 age of the pond is validated by the 137Cs and 210Pb age-depth chronology. Each sediment sample was analysed for organic, carbonate and clastic contents and particle-size. This high-resolution analysis revealed eleven upward-fining sequences, with three prominent grain size peaks at depths of 1.7m, 0.95m and 0.6m below ground surface, suggesting three major modern precipitation events. The 11 grain-size peaks since 1931 in the pond coincide with 11 periods of increased precipitation measured in high-elevation tree-ring records ˜50 km north of the pond. Thus, low-altitude post-seismic sedimentary depocentres provide excellent high-resolution palaeoclimate archives that can fill a significant data gap where other proxy records are not available.

Modifying a shrug exercise can facilitate the upward rotator muscles of the scapula.

PubMed

Pizzari, Tania; Wickham, James; Balster, Simon; Ganderton, Charlotte; Watson, Lyn

2014-02-01

Scapular dyskinesis, characterised by drooping scapulae and reduced upward rotation, has been implicated in the presentation of a number of shoulder disorders. Traditionally, in shoulder rehabilitation programmes, the shrug exercise has been prescribed to facilitate upward rotation of the scapula by strengthening the upper trapezius muscle. The aim of this research was to compare muscle activation levels during the standard shrug and the upward rotation shrug in a normal and pathological population. Surface electrodes recorded electromyographical activity from upper trapezius, middle trapezius, lower trapezius and serratus anterior muscles in 23 normal participants and 14 participants with multi-directional shoulder instability. Participants completed 10 trials of the standard shrug exercise at 0° of shoulder abduction and the upward rotation shrug exercise at 30° of shoulder abduction in the coronal plane. Muscle activity was expressed as a percentage of maximum voluntary isometric contraction. The four muscles tested performed at a higher intensity during the modified shrug than the standard shrug. Upper trapezius and lower trapezius activity was significantly greater (P < 0.05) in both populations. Though for middle trapezius and serratus anterior muscles, the modified shrug was statistically significant only in the normal population, P = 0.031 and P = <0.001 respectively. The upward rotation shrug is a more effective exercise for eliciting muscle activity of the upper and lower trapezius than the standard shrug in a normal and multi-directional instability population. Clinically, the upward rotation shrug might be useful to address scapular dyskinesis involving drooping shoulders and reduced scapula upward rotation. Copyright © 2013 Elsevier Ltd. All rights reserved.

Use of Genome Sequence Information for Meat Quality Trait QTL Mining for Causal Genes and Mutations on Pig Chromosome 17

PubMed Central

Hu, Zhi-Liang; Ramos, Antonio M.; Humphray, Sean J.; Rogers, Jane; Reecy, James M.; Rothschild, Max F.

2011-01-01

The newly available pig genome sequence has provided new information to fine map quantitative trait loci (QTL) in order to eventually identify causal variants. With targeted genomic sequencing efforts, we were able to obtain high quality BAC sequences that cover a region on pig chromosome 17 where a number of meat quality QTL have been previously discovered. Sequences from 70 BAC clones were assembled to form an 8-Mbp contig. Subsequently, we successfully mapped five previously identified QTL, three for meat color and two for lactate related traits, to the contig. With an additional 25 genetic markers that were identified by sequence comparison, we were able to carry out further linkage disequilibrium analysis to narrow down the genomic locations of these QTL, which allowed identification of the chromosomal regions that likely contain the causative variants. This research has provided one practical approach to combine genetic and molecular information for QTL mining. PMID:22303339

Lithofacies, depositional environments, and regional stratigraphy of the lower Eocene Ghazij Formation, Balochistan, Pakistan

USGS Publications Warehouse

Johnson, Edward A.; Warwick, Peter D.; Roberts, Stephen B.; Khan, Intizar H.

1999-01-01

The coal-bearing, lower Eocene Ghazij Formation is exposed intermittently over a distance of 750 kilometers along the western margin of the Axial Belt in north-central Pakistan. Underlying the formation are Jurassic to Paleocene carbonates that were deposited on a marine shelf along the pre- and post-rift northern margin of the Indian subcontinent. Overlying the formation are middle Eocene to Miocene marine and nonmarine deposits capped by Pliocene to Pleistocene collision molasse.The lower part of the Ghazij comprises mostly dark gray calcareous mudrock containing foraminifers and rare tabular to lenticular bodies of very fine grained to finegrained calcareous sandstone. We interpret the lower portion of this part of the Ghazij as outer-shelf deposits, and the upper portion as prodelta deposits. The middle part of the formation conformably overlies the lower part. It comprises medium-gray calcareous mudrock containing nonmarine bivalves, fine- to medium-grained calcareous sandstone, and rare intervals of carbonaceous shale and coal. Sandstone bodies in the middle part, in ascending stratigraphic order, are classified as Type I (coarsening-upward grain size, contain the trace fossil Ophiomorpha, and are commonly overlain by carbonaceous shale or coal), Type II (mixed grain size, display wedge-planar cross stratification, and contain fossil oyster shells and Ophiomorpha), and Type III (finingupward grain size, lenticular shape, erosional bases, and display trough cross stratification). These three types of bodies represent shoreface deposits, tidal channels, and fluvial channels, respectively. Mudrock intervals in the lower portion of this part of the formation contain fossil plant debris and represent estuarine deposits, and mudrock intervals in the upper portion contain fossil root traces and represent overbank deposits. We interpret the middle part of the Ghazij as a lower delta plain sequence. Overlying the middle part of the Ghazij, possibly unconformably, is the upper part of the formation, which comprises calcareous, nonfossiliferous, light-gray, brown, and red-banded mudrock, and rare Type III sandstone bodies. Much of the mudrock in this part of the formation represents multiple paleosol horizons. Locally, a limestone-pebble conglomerate is present in the upper part of the formation, either at the base or occupying most of the sequence. We interpret all but the uppermost portion of the upper part of the Ghazij as an upper delta plain deposit.Thin sections of Ghazij sandstones show mostly fragments of limestone, and heavy-liquid separations reveal the presence of chromite. Paleocurrent data and other evidence indicate a northwestern source area.During earliest Eocene time, the outer edge of the marine shelf off the Indian subcontinent collided with a terrestrial fragment positioned adjacent to, but detached from, the Asian mainland. This collision caused distal carbonateplatform deposits to be uplifted, and an intervening intracratonic sea, the Indus Foreland Basin, was created. Thus for the first time, the depositional slope switched from northwest facing to southeast facing, and a northwestern source for detritus was provided. We conclude that the Ghazij was deposited as a prograding clastic wedge along the northwestern shore of this sea, and that the formation contains sedimentologic evidence of a collisional event that predates the main impact between India and Asia.

An 110 Ma Crocodilian-Bearing Vertebrate Assemblage Preserved Between Basalt Flows on a mid-Pacific Seamount, ODP Site 865, Allison Guyot

NASA Astrophysics Data System (ADS)

Firth, J. V.; Yancey, T.; Alvarez-Zarikian, C.

2006-12-01

Crocodilian teeth, fish teeth, scales, and bones, and teeth and bones of uncertain affinities occur within a mudstone deposit sandwiched between basalt flows at the base of ODP Hole 865A on Allison Guyot in the middle of the Pacific Ocean. Age control from large benthic foraminifers, Sr-isotope stratigraphy, and radiometric ages of the basalt place the age of this assemblage at 110 \\mp 1.2 Ma, or late Aptian/early Albian. This deposit contains the oldest known crocodilian remains in the Pacific Realm. The vertebrate-bearing interval lies within a 30 cm mudstone unit overlying lithified fossiliferous limestone and underlying fossiliferous clayey limestone. The surface of the lithified limestone contains fish scales, vertebrate teeth and bones, and a carapace of the ostracod Cytherella. The lower 17 cm of mudstone is the prime vertebrate-bearing layer. It has a fining-upwards grain size trend, and an upward increase in dark coloration. The sand sized fraction is primarily pelletal glauconite, pyrite and fish debris. Limestone clasts up to several mm in diameter occur through the lower portion, whereas the higher portion contains sand laminae. A pristine 1 cm long crocodilian tooth, along with several smaller crocodilian teeth from this interval, attest to the presence of a saltwater crocodilian within the lagoon of this drowned mid-Pacific atoll. Common and varied fish teeth include both slender forms for piercing and grasping mobile prey and blunt flat-topped forms for crushing and grinding hard-shelled bottom living organisms such as oysters. The crushing teeth resemble those of the modern Black Drum fish, a bottom feeder common in shallow coastal environments. Abundant fish scales include both heavy phosphatic ganoid scales, a type present on many Mesozoic fish, and thin flexible scales of a type present on most modern fish. Some teeth and bone fragments are currently unidentified, and may represent vertebrates other than fish or crocodilians. No calcareous fossils are found within this unit. The lower unit grades upwards into a 5 cm thick black organic mudstone consisting of mostly amorphous organic debris, colonial algae, and smaller amounts of terrestrial spores, carbonized plant debris, and amber. No vertebrate remains are observed within the black mudstone. This unit in turn grades upwards into an 8 cm unit of mudstone with a coarsening-upwards grain size trend. This upper 8 cm unit contains only rare vertebrate remains, but has numerous oyster fragments and abundant, well preserved, articulated ostracod shells. The ostracod assemblage consists entirely of Cytherella (Suborder Platycopina). The entire 30 cm unit contains common pyrite, glauconite, and plant debris, and lacks calcareous fossils except in the uppermost part. This, as well as the occurrence of abundant Cytherella indicate sediment deposition in a restricted marine environment with low oxygen conditions. This discovery represents possibly the only known record of mid-Cretaceous reptilian remains from the mid- Pacific region, and the entire fossil assemblage provides valuable data for understanding the history of biotic migrations across the Cretaceous Pacific oceanic island realm. The intercalations of basalt flows with restricted marine and terrestrial sediments can be found not only in this ODP drill core but in others around the Pacific and shows the possibility of future discoveries of this type by scientific drilling of old seamounts.

Measured sections and discussion of the main turbidite member, Middle Pennsylvanian Minturn Formation, northern Sangre de Cristo Range, Custer and Saguache counties, Colorado

USGS Publications Warehouse

Soulliere, S.J.; DeAngelis, B.L.; Lindsey, D.A.

1984-01-01

The main turbidite member is the thickest and most extensive of the intervals of prodelta turbidites in the Minturn Formation. Each turbidite interval is part of a coarsening upward sequence interpreted as a prograding fan delta. A typical prograding cycle consists of prodelta marine shale and siltstone, prodelta turbidite sandstones, delta-front sandstone and conglomerate, and deltaic and alluvial-plain sandstone, siltstone, and shale. Fossils of 1and plants (mostly Calamites, including some in growth position) are locally abundant in deltaic and alluvial sediments of the prograding cycles. The turbidites are regarded as having been deposited offshore from alluvial systems.

Detection of trypanosomatid Phytomonas parasitic in plants by polymerase chain reaction amplification of small subunit ribosomal DNA.

PubMed

Teixeira, M M; Campaner, M; Camargo, E P

1994-01-01

To improve the diagnosis of Phytomonas infections in plants, we developed a polymerase chain reaction (PCR) assay using synthetic oligonucleotides complementary to conserved sequences of the 18S small subunit ribosomal (SSU) gene. From 10 ng upward of DNA of cultures of Phytomonas isolated from plants, fruits, and insects, PCR amplified an 800-bp DNA band that, after restriction analysis and probe hybridization, proved to be of 18S rDNA Phytomonas origin. PCR was also done with sap samples of tomatoes experimentally infected with Phytomonas, yielding amplified 800-bp ribosomal DNA bands before any flagellate could be detected by microscopic examination of the fruit sap.

A 100-year average recurrence interval for the San Andreas fault at Wrightwood, California

USGS Publications Warehouse

Fumal, T.E.; Pezzopane, S.K.; Weldon, R.J.; Schwartz, D.P.

1993-01-01

Evidence for five large earthquakes during the past five centuries along the San Andreas fault zone 70 kilometers northeast of Los Angeles, California, indicates that the average recurrence interval and the temporal variability are significantly smaller than previously thought. Rapid sedimentation during the past 5000 years in a 150-meter-wide structural depression has produced a greater than 21-meter-thick sequence of debris flow and stream deposits interbedded with more than 50 datable peat layers. Fault scarps, colluvial wedges, fissure infills, upward termination of ruptures, and tilted and folded deposits above listric faults provide evidence for large earthquakes that occurred in A.D. 1857, 1812, and about 1700, 1610, and 1470.

From Rags to "Rich as Rockefeller": Portrayals of Class Mobility in Newbery Titles

ERIC Educational Resources Information Center

Forest, Danielle E.

2014-01-01

Several scholars have noted the prevalence of the discourse of upward class mobility in the United States, particularly within K-12 education settings. "Rags-to-riches" stories, an extreme form of upward mobility discourse, have been embedded in American culture for generations. However, the prevalence of upward mobility discourse in…

77 FR 40834 - Proposed Amendment of Class E Airspace; Dillon, MT

Federal Register 2010, 2011, 2012, 2013, 2014

2012-07-11

... further expand the previous proposed amendment of Class E airspace extending upward from 700 feet above... an amendment of Class E airspace extending upward from 700 feet above the surface. DATES: Comments... published a NPRM to modify Class E airspace, extending upward from 700 feet or more above the surface, at...

Upward Bound Math-Science: Program Description and Interim Impact Estimates

ERIC Educational Resources Information Center

Olsen, Robert; Seftor, Neil; Silva, Tim; Myers, David; DesRoches, David; Young, Julie

2007-01-01

To help address continuing disparities in academic achievement and under-representation of disadvantaged groups in math and science majors and careers, the U.S. Department of Education (ED) established a math and science initiative in 1990 within Upward Bound, a federal grant program known as Upward Bound Math-Science (UBMS) designed to provide…

34 CFR 645.43 - What other requirements must a grantee meet?

Code of Federal Regulations, 2010 CFR

2010-07-01

... period, Regular Upward Bound projects shall serve between 50 and 150 participants and Upward Bound Math and Science projects shall serve between 50 and 75 participants. (2) Veterans Upward Bound projects... requirements of paragraphs (a)(1) and (a)(2) of this section if the applicant can demonstrate that the project...

34 CFR 645.42 - What are Upward Bound stipends?

Code of Federal Regulations, 2011 CFR

2011-07-01

... 34 Education 3 2011-07-01 2011-07-01 false What are Upward Bound stipends? 645.42 Section 645.42 Education Regulations of the Offices of the Department of Education (Continued) OFFICE OF POSTSECONDARY EDUCATION, DEPARTMENT OF EDUCATION UPWARD BOUND PROGRAM What Conditions Must Be Met by a Grantee? § 645.42...

34 CFR 645.12 - How are regular Upward Bound projects organized?

Code of Federal Regulations, 2010 CFR

2010-07-01

... 34 Education 3 2010-07-01 2010-07-01 false How are regular Upward Bound projects organized? 645.12 Section 645.12 Education Regulations of the Offices of the Department of Education (Continued) OFFICE OF POSTSECONDARY EDUCATION, DEPARTMENT OF EDUCATION UPWARD BOUND PROGRAM What Kinds of Projects and Services Does...

Social comparison processes and catastrophising in fibromyalgia: A path analysis.

PubMed

Cabrera-Perona, V; Buunk, A P; Terol-Cantero, M C; Quiles-Marcos, Y; Martín-Aragón, M

2017-06-01

In addition to coping strategies, social comparison may play a role in illness adjustment. However, little is known about the role of contrast and identification in social comparison in adaptation to fibromyalgia. To evaluate through a path analysis in a sample of fibromyalgia patients, the association between identification and contrast in social comparison, catastrophising and specific health outcomes (fibromyalgia illness impact and psychological distress). 131 Spanish fibromyalgia outpatients (mean age: 50.15, SD = 11.1) filled out a questionnaire. We present a model that explained 33% of the variance in catastrophising by direct effects of more use of upward contrast and downward identification. In addition, 35% of fibromyalgia illness impact variance was explained by less upward identification, more upward contrast and more catastrophising and 42% of the variance in psychological distress by a direct effect of more use of upward contrast together with higher fibromyalgia illness impact. We suggest that intervention programmes with chronic pain and fibromyalgia patients should focus on enhancing the use of upward identification in social comparison, and on minimising the use of upward contrast and downward identification in social comparison.

Upward and downward facing high mass flux spray cooling with additives: A novel technique to enhance the heat removal rate at high initial surface temperature

NASA Astrophysics Data System (ADS)

Pati, A. R.; Kumar, A.; Mohapatra, S. S.

2018-06-01

The objective of the current work is to enhance the spray cooling by changing the orientation of the nozzle with different additives (acetone, methanol, ethanol, benzene, n-hexane, tween 20 and salt) in water. The experiments are carried out by upward, downward and both upward and downward facing sprays. The optimization result depicts that the spray produced by upward facing spray gives higher heat flux than the downward facing spray and also cooling by both the upward and downward facing spray simultaneously produces better result than the individual. Further experiments with both upward and downward facing spray by using different coolants reveal that in case of cooling by ethanol (500 ppm) + water mixture, the maximum enhancement of surface heat flux ( 2.57 MW/m2) and cooling rate (204 °C/s) is observed. However, the minimum surface heat flux is achieved in case of methanol (100 ppm) + water due to higher contact angle (710) among all the considered coolants.

The Mediating Roles of Upward Social Comparison and Self-esteem and the Moderating Role of Social Comparison Orientation in the Association between Social Networking Site Usage and Subjective Well-Being.

PubMed

Wang, Jin-Liang; Wang, Hai-Zhen; Gaskin, James; Hawk, Skyler

2017-01-01

The increased pervasiveness of social media use has raised questions about potential effects on users' subjective well-being, with studies reaching contrasting conclusions. To reconcile these discrepancies and shed new light on this phenomenon, the current study examined: (1) whether upward social comparison and self-esteem mediate the association between social networking site (SNS) usage and users' subjective well-being, and (2) whether the association between SNS usage and upward social comparison is moderated by users' social comparison orientation. Data from 696 participants were collected. Structural equation modeling revealed that upward social comparison and self-esteem mediated the relationship between SNS usage and users' subjective well-being. We found that social comparison orientation moderated the association between passive SNS usage and users' upward social comparison. Specifically, social comparison orientation strengthened the association between passive SNS usage and upward social comparison. The results might suggest a process through which passive SNS usage is related to subjective well-being, and identify a context under which these associations may differ.

The Mediating Roles of Upward Social Comparison and Self-esteem and the Moderating Role of Social Comparison Orientation in the Association between Social Networking Site Usage and Subjective Well-Being

PubMed Central

Wang, Jin-Liang; Wang, Hai-Zhen; Gaskin, James; Hawk, Skyler

2017-01-01

The increased pervasiveness of social media use has raised questions about potential effects on users’ subjective well-being, with studies reaching contrasting conclusions. To reconcile these discrepancies and shed new light on this phenomenon, the current study examined: (1) whether upward social comparison and self-esteem mediate the association between social networking site (SNS) usage and users’ subjective well-being, and (2) whether the association between SNS usage and upward social comparison is moderated by users’ social comparison orientation. Data from 696 participants were collected. Structural equation modeling revealed that upward social comparison and self-esteem mediated the relationship between SNS usage and users’ subjective well-being. We found that social comparison orientation moderated the association between passive SNS usage and users’ upward social comparison. Specifically, social comparison orientation strengthened the association between passive SNS usage and upward social comparison. The results might suggest a process through which passive SNS usage is related to subjective well-being, and identify a context under which these associations may differ. PMID:28553256

Mechanical Failure of Fine Root Cortical Cells Initiates Plant Hydraulic Decline during Drought.

PubMed

Cuneo, Italo F; Knipfer, Thorsten; Brodersen, Craig R; McElrone, Andrew J

2016-11-01

Root systems perform the crucial task of absorbing water from the soil to meet the demands of a transpiring canopy. Roots are thought to operate like electrical fuses, which break when carrying an excessive load under conditions of drought stress. Yet the exact site and sequence of this dysfunction in roots remain elusive. Using in vivo x-ray computed microtomography, we found that drought-induced mechanical failure (i.e. lacunae formation) in fine root cortical cells is the initial and primary driver of reduced fine root hydraulic conductivity (Lp r ) under mild to moderate drought stress. Cortical lacunae started forming under mild drought stress (-0.6 MPa Ψ stem ), coincided with a dramatic reduction in Lp r , and preceded root shrinkage or significant xylem embolism. Only under increased drought stress was embolism formation observed in the root xylem, and it appeared first in the fine roots (50% loss of hydraulic conductivity [P 50 ] reached at -1.8 MPa) and then in older, coarse roots (P 50 = -3.5 MPa). These results suggest that cortical cells in fine roots function like hydraulic fuses that decouple plants from drying soil, thus preserving the hydraulic integrity of the plant's vascular system under early stages of drought stress. Cortical lacunae formation led to permanent structural damage of the root cortex and nonrecoverable Lp r , pointing to a role in fine root mortality and turnover under drought stress. © 2016 American Society of Plant Biologists. All Rights Reserved.

Upward electron beams measured by DE-1 - A primary source of dayside region-1 Birkeland currents

NASA Technical Reports Server (NTRS)

Burch, J. L.; Reiff, P. H.; Sugiura, M.

1983-01-01

Measurements made by the High Altitude Plasma Instrument on DE-1 have shown that intense upward electron beams with energies from about 20 eV to about 200 eV are a common feature of the region just equatorward of the morning-side polar cusp. Computations of the currents carried by these beams and by the precipitating cusp electrons show excellent agreement with the simultaneous DE-1 magnetometer measurements for both upward and downward Birkeland currents. The data indicate that cold ionospheric electrons, which carry the downward region-1 Birkeland currents on the morning side, are accelerated upward by potential drops of a few tens of eV at altitudes of several thousand kilometers. This acceleration process allows spacecraft above those altitudes to measure routinely the charge carriers of both downward and upward current systems.

The basal fallout and surge deposits of the mafic ignimbrite-forming Villa Senni Eruption Unit, (Colli Albani volcano, Italy)

NASA Astrophysics Data System (ADS)

Vinkler, A.; Ort, M. H.; Giordano, G.

2009-12-01

The Villa Senni Eruption Unit (350ka) represents the youngest large caldera-forming eruption of the Colli Albani volcano near Rome (Italy). The Colli Albani magma is marked by very undersaturated chemistry (tephritic to K-foiditic) and low viscosity. The total volume of the Villa Senni Eruption Unit is estimated at > 50 km3 and 30 km3 DRE (Watkins et al., 2002). The unit includes a sequence of a basal fallout/surge deposit, two main ignimbrites emplaced during the same eruptive event, a series of breccia deposits positioned between the two ignimbrites, and a rarely preserved final fallout. The basal surge and fallout sequence may help answer questions regarding the beginning of a large mafic ignimbrite eruption. The entire surge and fallout deposit is 190 cm thick at the caldera wall, consisting of 19 individual, parallel to faintly cross-stratified layers. The deposit distally thins to 25 cm at 18 km east of the caldera and to 2.5 cm at 21 km NW of the caldera. The eruption started with fine ash surges showing cross-stratification at proximal locations and being vesicular distally. The deposit consists mainly of juvenile clasts, which are angular, poorly vesicular, and rich in leucite microlites (~80 µm). Clasts around 100-150 μm show signs of magma-water interaction: quench fracturing: conchoidal and step fractures, smooth surfaces, adhering clasts and melt film. These features are present in several thin alternating surge and fall sequences at the base of the deposit. The lithic clasts in these first deposits are concentrated in layers, indicating pulsatory behavior of the eruption. Upward, the deposit consists of thicker, coarse ash to lapilli fallout layers from more sustained columns. The juvenile clasts in these deposits are more irregular, with higher vesicularity (but less than 50%) and smaller leucite microlites (~60 μm). The uppermost part of the basal fallout/surge deposit shows features transitional to the first large ignimbrite: fallout deposits alternate with poorly sorted flow units, with an increase in free leucite crystals and lithic content, with more abundant deep lithic clasts and a further leucite microlite size decrease (~20 μm) , which could indicate an accelerating magma in the conduit. We think that external factors, such as magma-water interaction and consequent gas explosions, triggered the highly explosive Villa Senni Eruption. Low vesicularity of the early juvenile clasts suggests the magma was relatively low in volatiles at the outset and did not start as a gas-driven eruption. Later in the eruption, the high ascent rate and fast decompression of the magma sustained a large explosive eruption.

The terminal Permian in European Russia: Vyaznikovian Horizon, Nedubrovo Member, and Permian-Triassic boundary

NASA Astrophysics Data System (ADS)

Lozovsky, V. R.; Balabanov, Yu. P.; Karasev, E. V.; Novikov, I. V.; Ponomarenko, A. G.; Yaroshenko, O. P.

2016-07-01

The comprehensive analysis of the data obtained on terrestrial vertebrata, ostracods, entomologic fauna, megaflora, and microflora in deposits of the Vyaznikovian Horizon and Nedubrovo Member, as well as the paleomagnetic data measured in enclosing rocks, confirms heterogeneity of these deposits. Accordingly, it is necessary to distinguish these two stratons in the terminal Permian of the East European Platform. The combined sequence of Triassic-Permian boundary deposits in the Moscow Syneclise, which is considered to be the most complete sequence in the East European Platform, is as follows (from bottom upward): Vyatkian deposits; Vyaznikovian Horizon, including Sokovka and Zhukovo members; Nedubrovo Member (Upper Permian); Astashikha and Ryabi members of the Vokhmian Horizon (Lower Triassic). None of the sequences of Permian-Triassic boundary deposits known in the area of study characterizes this sequence in full volume. In the north, the Triassic deposits are underlain by the Nedubrovo Member; in the south (the Klyazma River basin), the sections are underlain by the Vyaznikovian Horizon. The Permian-Triassic boundary adopted in the General Stratigraphic Scale of Russia for continental deposits of the East European platform (the lower boundary of the Astashikha Member) is more ancient than the one adopted in the International Stratigraphic Chart. The same geological situation is observed in the German Basin and other localities where Triassic continental deposits are developed. The ways of solving this problem are discussed in this article.

The Development of Voiceless Sibilant Fricatives in Putonghua-Speaking Children

ERIC Educational Resources Information Center

Li, Fangfang; Munson, Benjamin

2016-01-01

Purpose The aims of the present study are (a) to quantify the developmental sequence of fricative mastery in Putonghua-speaking children and discuss the observed pattern in relation to existing theoretical positions, and (b) to describe the acquisition of the fine-articulatory/acoustic details of fricatives in the multidimensional acoustic space.…

Mechanical failure of fine root cortical cells initiates plant hydraulic decline during drought

USDA-ARS?s Scientific Manuscript database

Root systems perform the crucial task of absorbing water from the soil to meet the demands of a transpiring canopy. Roots are thought to operate like electrical fuses, which break when carrying an excessive load under conditions of drought stress. Yet the exact site and sequence of this dysfunction ...

The Significance of Recursion Using the TI-84 Sequence Editor

ERIC Educational Resources Information Center

Domenick, Anthony

2015-01-01

Patterns are a ubiquitous phenomenon. They exist in nature's plant species emerging as a complete order from truncated matter. Patterns are also present in the fine arts where the aesthetic properties of form exist and conjugate through paintings and sculptures. Mathematical patterns, the focus of this position paper, dominate financial scenarios,…

Preference uncertainty, preference learning, and paired comparison experiments

Treesearch

David C. Kingsley; Thomas C. Brown

2010-01-01

Results from paired comparison experiments suggest that as respondents progress through a sequence of binary choices they become more consistent, apparently fine-tuning their preferences. Consistency may be indicated by the variance of the estimated valuation distribution measured by the error term in the random utility model. A significant reduction in the variance is...

Phylogeny of Hirsutella species (Ophiocordycipitaceae) from the USA: remedying the paucity of Hirsutella sequence data

USDA-ARS?s Scientific Manuscript database

Hirsutella (Ophiocordycipitaceae: Hypocreales) is a genus of insect, mite, and nematode pathogens with an asexual morph, which generally produce a mucilaginous cluster of one or several conidia on phialides that are basally subulate and taper to a fine neck. The generic name Hirsutella has been prop...

Mapping the patent landscape of synthetic biology for fine chemical production pathways.

PubMed

Carbonell, Pablo; Gök, Abdullah; Shapira, Philip; Faulon, Jean-Loup

2016-09-01

A goal of synthetic biology bio-foundries is to innovate through an iterative design/build/test/learn pipeline. In assessing the value of new chemical production routes, the intellectual property (IP) novelty of the pathway is important. Exploratory studies can be carried using knowledge of the patent/IP landscape for synthetic biology and metabolic engineering. In this paper, we perform an assessment of pathways as potential targets for chemical production across the full catalogue of reachable chemicals in the extended metabolic space of chassis organisms, as computed by the retrosynthesis-based algorithm RetroPath. Our database for reactions processed by sequences in heterologous pathways was screened against the PatSeq database, a comprehensive collection of more than 150M sequences present in patent grants and applications. We also examine related patent families using Derwent Innovations. This large-scale computational study provides useful insights into the IP landscape of synthetic biology for fine and specialty chemicals production. © 2016 The Authors. Microbial Biotechnology published by John Wiley & Sons Ltd and Society for Applied Microbiology.

View-invariant gait recognition method by three-dimensional convolutional neural network

NASA Astrophysics Data System (ADS)

Xing, Weiwei; Li, Ying; Zhang, Shunli

2018-01-01

Gait as an important biometric feature can identify a human at a long distance. View change is one of the most challenging factors for gait recognition. To address the cross view issues in gait recognition, we propose a view-invariant gait recognition method by three-dimensional (3-D) convolutional neural network. First, 3-D convolutional neural network (3DCNN) is introduced to learn view-invariant feature, which can capture the spatial information and temporal information simultaneously on normalized silhouette sequences. Second, a network training method based on cross-domain transfer learning is proposed to solve the problem of the limited gait training samples. We choose the C3D as the basic model, which is pretrained on the Sports-1M and then fine-tune C3D model to adapt gait recognition. In the recognition stage, we use the fine-tuned model to extract gait features and use Euclidean distance to measure the similarity of gait sequences. Sufficient experiments are carried out on the CASIA-B dataset and the experimental results demonstrate that our method outperforms many other methods.

Fully automatic hp-adaptivity for acoustic and electromagnetic scattering in three dimensions

NASA Astrophysics Data System (ADS)

Kurtz, Jason Patrick

We present an algorithm for fully automatic hp-adaptivity for finite element approximations of elliptic and Maxwell boundary value problems in three dimensions. The algorithm automatically generates a sequence of coarse grids, and a corresponding sequence of fine grids, such that the energy norm of the error decreases exponentially with respect to the number of degrees of freedom in either sequence. At each step, we employ a discrete optimization algorithm to determine the refinements for the current coarse grid such that the projection-based interpolation error for the current fine grid solution decreases with an optimal rate with respect to the number of degrees of freedom added by the refinement. The refinements are restricted only by the requirement that the resulting mesh is at most 1-irregular, but they may be anisotropic in both element size h and order of approximation p. While we cannot prove that our method converges at all, we present numerical evidence of exponential convergence for a diverse suite of model problems from acoustic and electromagnetic scattering. In particular we show that our method is well suited to the automatic resolution of exterior problems truncated by the introduction of a perfectly matched layer. To enable and accelerate the solution of these problems on commodity hardware, we include a detailed account of three critical aspects of our implementation, namely an efficient implementation of sum factorization, several efficient interfaces to the direct multi-frontal solver MUMPS, and some fast direct solvers for the computation of a sequence of nested projections.

Combining Next Generation Sequencing with Bulked Segregant Analysis to Fine Map a Stem Moisture Locus in Sorghum (Sorghum bicolor L. Moench).

PubMed

Han, Yucui; Lv, Peng; Hou, Shenglin; Li, Suying; Ji, Guisu; Ma, Xue; Du, Ruiheng; Liu, Guoqing

2015-01-01

Sorghum is one of the most promising bioenergy crops. Stem juice yield, together with stem sugar concentration, determines sugar yield in sweet sorghum. Bulked segregant analysis (BSA) is a gene mapping technique for identifying genomic regions containing genetic loci affecting a trait of interest that when combined with deep sequencing could effectively accelerate the gene mapping process. In this study, a dry stem sorghum landrace was characterized and the stem water controlling locus, qSW6, was fine mapped using QTL analysis and the combined BSA and deep sequencing technologies. Results showed that: (i) In sorghum variety Jiliang 2, stem water content was around 80% before flowering stage. It dropped to 75% during grain filling with little difference between different internodes. In landrace G21, stem water content keeps dropping after the flag leaf stage. The drop from 71% at flowering time progressed to 60% at grain filling time. Large differences exist between different internodes with the lowest (51%) at the 7th and 8th internodes at dough stage. (ii) A quantitative trait locus (QTL) controlling stem water content mapped on chromosome 6 between SSR markers Ch6-2 and gpsb069 explained about 34.7-56.9% of the phenotypic variation for the 5th to 10th internodes, respectively. (iii) BSA and deep sequencing analysis narrowed the associated region to 339 kb containing 38 putative genes. The results could help reveal molecular mechanisms underlying juice yield of sorghum and thus to improve total sugar yield.

Formaldehyde substitute fixatives: effects on nucleic acid preservation.

PubMed

Moelans, Cathy B; Oostenrijk, Daphne; Moons, Michiel J; van Diest, Paul J

2011-11-01

In surgical pathology, formalin-fixed paraffin-embedded tissues are increasingly being used as a source of DNA and RNA for molecular assays in addition to histopathological evaluation. However, the commonly used formalin fixative is carcinogenic, and its crosslinking impairs DNA and RNA quality. The suitability of three new presumably less toxic, crosslinking (F-Solv) and non-crosslinking (FineFIX, RCL2) alcohol-based fixatives was tested for routine molecular pathology in comparison with neutral buffered formalin (NBF) as gold standard. Size ladder PCR, epidermal growth factor receptor sequence analysis, microsatellite instability (MSI), chromogenic (CISH), fluorescence in situ hybridisation (FISH) and qPCR were performed. The alcohol-based non-crosslinking fixatives (FineFIX and RCL2) resulted in a higher DNA yield and quality compared with crosslinking fixatives (NBF and F-Solv). Size ladder PCR resulted in a shorter amplicon size (300 bp) for both crosslinking fixatives compared with the non-crosslinking fixatives (400 bp). All four fixatives were directly applicable for MSI and epidermal growth factor receptor sequence analysis. All fixatives except F-Solv showed clear signals in CISH and FISH. RNA yield and quality were superior after non-crosslinking fixation. qPCR resulted in lower Ct values for RCL2 and FineFIX. The alcohol-based non-crosslinking fixatives performed better than crosslinking fixatives with regard to DNA and RNA yield, quality and applicability in molecular diagnostics. Given the higher yield, less starting material may be necessary, thereby increasing the applicability of biopsies for molecular studies.

Education Dept. to End Controversial Study of Upward Bound

ERIC Educational Resources Information Center

Field, Kelly

2008-01-01

Yielding to pressure from Congress and grant recipients, the U.S. Education Department has agreed to abandon a controversial evaluation of the Upward Bound (UB) college-preparation program. The study, which began last year, was designed to measure whether Upward Bound would have a bigger impact on college-going rates if it were refocused on…

Upward Mobility Programs in the Service Sector for Disadvantaged and Dislocated Workers. Volume I: Final Report.

ERIC Educational Resources Information Center

Tao, Fumiyo; And Others

Upward mobility programs in the service sector for low-skilled, economically disadvantaged, and dislocated or displaced workers promote employment security, career development, and productivity. Two basic types of upward mobility programs are basic and job-specific skills training. Although 60-80 percent of all employer-sponsored formal training…

77 FR 21089 - Notice of Submission for OMB Review; Application for Grants Under the Upward Bound Math and...

Federal Register 2010, 2011, 2012, 2013, 2014

2012-04-09

... Upward Bound Math and Science Program AGENCY: Office of Postsecondary Education, Department of Education. SUMMARY: The Upward Bound Math and Science (UBMS) program provides grants to institutions of higher... for success in a program of postsecondary education that lead to careers in math and science. DATES...

34 CFR 645.31 - What selection criteria does the Secretary use?

Code of Federal Regulations, 2010 CFR

2010-07-01

... Upward Bound project, the Secretary reviews each type of project (Regular, Math and Science, or Veterans... need for an Upward Bound Math and Science Center in the proposed target area on the basis of— (i) The... careers in mathematics and science, and who could benefit from an Upward Bound Math and Science program...

34 CFR 645.31 - What selection criteria does the Secretary use?

Code of Federal Regulations, 2011 CFR

2011-07-01

... Upward Bound project, the Secretary reviews each type of project (Regular, Math and Science, or Veterans... need for an Upward Bound Math and Science Center in the proposed target area on the basis of— (i) The... careers in mathematics and science, and who could benefit from an Upward Bound Math and Science program...

34 CFR 645.31 - What selection criteria does the Secretary use?

Code of Federal Regulations, 2013 CFR

2013-07-01

... Upward Bound project, the Secretary reviews each type of project (Regular, Math and Science, or Veterans... need for an Upward Bound Math and Science Center in the proposed target area on the basis of— (i) The... careers in mathematics and science, and who could benefit from an Upward Bound Math and Science program...

34 CFR 645.31 - What selection criteria does the Secretary use?

Code of Federal Regulations, 2014 CFR

2014-07-01

... Upward Bound project, the Secretary reviews each type of project (Regular, Math and Science, or Veterans... need for an Upward Bound Math and Science Center in the proposed target area on the basis of— (i) The... careers in mathematics and science, and who could benefit from an Upward Bound Math and Science program...

34 CFR 645.31 - What selection criteria does the Secretary use?

Code of Federal Regulations, 2012 CFR

2012-07-01

... Upward Bound project, the Secretary reviews each type of project (Regular, Math and Science, or Veterans... need for an Upward Bound Math and Science Center in the proposed target area on the basis of— (i) The... careers in mathematics and science, and who could benefit from an Upward Bound Math and Science program...

Upwardly Mobile Working-Class Adolescents: A Biographical Approach on Habitus Dislocation

ERIC Educational Resources Information Center

Christodoulou, Michael; Spyridakis, Manos

2017-01-01

Habitus dislocation is a much debatable term. By presenting life-histories of working-class adolescents, this article argues (i) that not all upwardly mobile working-class adolescents experience habitus dislocation and, (ii) that habitus dislocation has its roots in the self-initiated ruptures that face some of those who want to be upwardly mobile…

34 CFR 645.3 - Who is eligible to participate in an Upward Bound project?

Code of Federal Regulations, 2010 CFR

2010-07-01

... Who is eligible to participate in an Upward Bound project? An individual is eligible to participate in a Regular, Veterans, or a Math and Science Upward Bound project if the individual meets all of the... project? 645.3 Section 645.3 Education Regulations of the Offices of the Department of Education...

Stratigraphic Stacking of Deepmarine Channel Levee Turbidites: Scales of Cyclicity and their Origin. Examples from the Laingsburg Fm. (Karoo, South Africa) and the Rosario Fm. (Baja, Mexico)

NASA Astrophysics Data System (ADS)

Kane, I. A.; Hodgson, D.

2009-12-01

Thinning upwards of the turbidite beds that form deepmarine channel levees is a common motif reported from modern and recent levees on the seafloor, from subsurface examples, and from outcropping ancient examples. Because levees are thought to be built by deposition from turbidity currents superelevated over their channel form, the volume and style of overbank deposition are controlled primarily by the relationship between levee height (i.e., thalweg to crest) and flow thickness, determining the amount of overspill. Thus stratigraphic variability of turbidite thickness is explained by some change in either or both of those factors, which may arise autocyclicly or allocyclicly. Variation in the ratio of intra-channel and extra-channel deposition can be an autocyclic stratigraphic response, e.g., in bypass dominated systems, thalweg aggradation may be retarded with respect to levee aggradation, hence as levee relief increases, flows become more confined and, given a relatively narrow range of flow sizes, the volume of overbank flow and deposit thickness decrease with stratigraphic height. However, the same stratigraphic response of the levee may occur due to allocyclic flow magnitude variation, i.e., through decreasing flow magnitude. In both the autocyclic and allocyclic case the stratigraphic response of the levee may be one of thinning upwards, even if the overall system response may be one of progradation (autocyclic bypassing case) or retrogradation (allocyclic decreasing flow magnitude case), with entirely different connotations for sequence stratigraphic interpretation. Here we report examples of different scales of bed thickness cyclicity (both thickening and thinning upward cycles superimposed by smaller scale cycles) within levees of the Rosario Formation, Baja California, Mexico, and from the Laingsburg Formation, Karoo, South Africa, and, together with published examples, discuss criteria for the recognition, and drivers of, autocyclic and allocyclic bed thickness trends.

Stratigraphic framework of sediment-starved sand ridges on a mixed siliciclastic/carbonate inner shelf; west-central Florida

USGS Publications Warehouse

Edwards, J.H.; Harrison, S.E.; Locker, S.D.; Hine, A.C.; Twichell, D.C.

2003-01-01

Seismic reflection profiles and vibracores have revealed that an inner shelf, sand-ridge field has developed over the past few thousand years situated on an elevated, broad bedrock terrace. This terrace extends seaward of a major headland associated with the modern barrier-island coastline of west-central Florida. The overall geologic setting is a low-energy, sediment-starved, mixed siliciclastic/carbonate inner continental shelf supporting a thin sedimentary veneer. This veneer is arranged in a series of subparallel, shore-oblique, and to a minor extent, shore-parallel sand ridges. Seven major facies are present beneath the ridges, including a basal Neogene limestone gravel facies and a blue-green clay facies indicative of dominantly authigenic sedimentation. A major sequence boundary separates these older units from Holocene age, organic-rich mud facies (marsh), which grades upward into a muddy sand facies (lagoon or shallow open shelf/seagrass meadows). Cores reveal that the muddy shelf facies is either in sharp contact or grades upward into a shelly sand facies (ravinement or sudden termination of seagrass meadows). The shelly sand facies grades upward to a mixed siliciclastic/carbonate facies, which forms the sand ridges themselves. This mixed siliciclastic/carbonate facies differs from the sediment on the beach and shoreface, suggesting insignificant sediment exchange between the offshore ridges and the modern coastline. Additionally, the lack of early Holocene, pre-ridge facies in the troughs between the ridges suggests that the ridges themselves do not migrate laterally extensively. Radiocarbon dating has indicated that these sand ridges can form relatively quickly (???1.3 ka) on relatively low-energy inner shelves once open-marine conditions are available, and that frequent, high-energy, storm-dominated conditions are not necessarily required. We suggest that the two inner shelf depositional models presented (open-shelf vs. migrating barrier-island) may have co-existed spatially and/or temporally to explain the distribution of facies and vertical facies contacts. ?? 2003 Elsevier B.V. All rights reserved.

Buoyant Effects on the Flammability of Silicone Samples Planned for the Spacecraft Fire Experiment (Saffire)

NASA Technical Reports Server (NTRS)

Niehaus, Justin E.; Ferkul, Paul V.; Gokoglu, Suleyman A.; Ruff, Gary A.

2015-01-01

Flammability experiments on silicone samples were conducted in anticipation of the Spacecraft Fire Experiment (Saffire). The sample geometry was chosen to match the NASA 6001 Test 1 specification, namely 5 cm wide by 30 cm tall. Four thicknesses of silicone (0.25, 0.36, 0.61 and 1.00 mm) were examined. Tests included traditional upward buoyant flame spread using Test 1 procedures, downward opposed-flow flame spread, horizontal and angled flame spread, and forced-flow upward and downward flame spread. In addition to these configurations, upward and downward tests were conducted in a chamber with varying oxygen concentrations. In the upward buoyant flame spread tests, the flame generally did not burn the entire sample. As thickness was increased, the flame spread distance decreased before flame extinguishment. For the thickest sample, ignition could not be achieved. In the downward tests, the two thinnest samples permitted the flame to burn the entire sample, but the spread rate was lower compared to the corresponding upward values. The other two thicknesses could not be ignited in the downward configuration. The increased flammability for downward spreading flames relative to upward ones is uncommon. The two thinnest samples also burned completely in the horizontal configuration, as well as at angles up to 75 degrees from the horizontal. Upward tests in air with an added forced flow were more flammable. The upward and downward flammability behavior was compared in atmospheres of varying oxygen concentration to determine a maximum oxygen concentration for each configuration. Complementary analyses using EDS, TGA, and SEM techniques suggest the importance of the silica layer deposited downstream onto the unburned sample surface.

Fine mapping of the genic male-sterile ms 1 gene in Capsicum annuum L.

PubMed

Jeong, Kyumi; Choi, Doil; Lee, Jundae

2018-01-01

The genomic region cosegregating with the genic male-sterile ms 1 gene of Capsicum annuum L. was delimited to a region of 869.9 kb on chromosome 5 through fine mapping analysis. A strong candidate gene, CA05g06780, a homolog of the Arabidopsis MALE STERILITY 1 gene that controls pollen development, was identified in this region. Genic male sterility caused by the ms 1 gene has been used for the economically efficient production of massive hybrid seeds in paprika (Capsicum annuum L.), a colored bell-type sweet pepper. Previously, a CAPS marker, PmsM1-CAPS, located about 2-3 cM from the ms 1 locus, was reported. In this study, we constructed a fine map near the ms 1 locus using high-resolution melting (HRM) markers in an F 2 population consisting of 1118 individual plants, which segregated into 867 male-fertile and 251 male-sterile plants. A total of 12 HRM markers linked to the ms 1 locus were developed from 53 primer sets targeting intraspecific SNPs derived by comparing genome-wide sequences obtained by next-generation resequencing analysis. Using this approach, we narrowed down the region cosegregating with the ms 1 gene to 869.9 kb of sequence. Gene prediction analysis revealed 11 open reading frames in this region. A strong candidate gene, CA05g06780, was identified; this gene is a homolog of the Arabidopsis MALE STERILITY 1 (MS1) gene, which encodes a PHD-type transcription factor that regulates pollen and tapetum development. Sequence comparison analysis suggested that the CA05g06780 gene is the strongest candidate for the ms 1 gene of paprika. To summarize, we developed a cosegregated marker, 32187928-HRM, for marker-assisted selection and identified a strong candidate for the ms 1 gene.

Time-lapse analysis of gravitropism in Ceratodon protonemata

NASA Technical Reports Server (NTRS)

Young, J. C.; Sack, F. D.

1992-01-01

The tip cell of the protonema of the moss Ceratodon purpureus (Hedw.) Brid. is negatively gravitropic when grown in the dark on supplemented agar. Gravitropism, plastid distribution, and plastid movement were studied in living cells using time-lapse video microscopy and infrared light. A wrong-way (downward) curvature preceded upward curvature and was detected as early as 2 minutes after reorientation. Upward curvature began 30-45 minutes after reorientation to the horizontal. Cell division temporarily reversed upward curvature, but did not inhibit wrong-way curvature. Since significant amyloplast sedimentation always occurred before the start of upward curvature, it is possible that these amyloplasts function as statoliths for upward curvature. However, no significant amyloplast sedimentation occurred before wrong-way curvature. Thus, this early phase of gravitropism cannot require plastid sedimentation for gravity sensing. Most plastids moved within and between zones, and plastid zonation was highly dynamic. Plastids moved toward the apex and toward the base of the cell at rates much slower than cytoplasmic streaming. Despite the dynamic nature of plastid movement and zonation, during upward curvature the distance between sedimented plastids and the apex stayed constant. Time-lapse analysis has revealed intriguing events not readily seen previously using destructive sampling.

Frequency tagging to track the neural processing of contrast in fast, continuous sound sequences.

PubMed

Nozaradan, Sylvie; Mouraux, André; Cousineau, Marion

2017-07-01

The human auditory system presents a remarkable ability to detect rapid changes in fast, continuous acoustic sequences, as best illustrated in speech and music. However, the neural processing of rapid auditory contrast remains largely unclear, probably due to the lack of methods to objectively dissociate the response components specifically related to the contrast from the other components in response to the sequence of fast continuous sounds. To overcome this issue, we tested a novel use of the frequency-tagging approach allowing contrast-specific neural responses to be tracked based on their expected frequencies. The EEG was recorded while participants listened to 40-s sequences of sounds presented at 8Hz. A tone or interaural time contrast was embedded every fifth sound (AAAAB), such that a response observed in the EEG at exactly 8 Hz/5 (1.6 Hz) or harmonics should be the signature of contrast processing by neural populations. Contrast-related responses were successfully identified, even in the case of very fine contrasts. Moreover, analysis of the time course of the responses revealed a stable amplitude over repetitions of the AAAAB patterns in the sequence, except for the response to perceptually salient contrasts that showed a buildup and decay across repetitions of the sounds. Overall, this new combination of frequency-tagging with an oddball design provides a valuable complement to the classic, transient, evoked potentials approach, especially in the context of rapid auditory information. Specifically, we provide objective evidence on the neural processing of contrast embedded in fast, continuous sound sequences. NEW & NOTEWORTHY Recent theories suggest that the basis of neurodevelopmental auditory disorders such as dyslexia might be an impaired processing of fast auditory changes, highlighting how the encoding of rapid acoustic information is critical for auditory communication. Here, we present a novel electrophysiological approach to capture in humans neural markers of contrasts in fast continuous tone sequences. Contrast-specific responses were successfully identified, even for very fine contrasts, providing direct insight on the encoding of rapid auditory information. Copyright © 2017 the American Physiological Society.

Observations of Upward Propagating Waves in the Transition Region and Corona above Sunspots

NASA Astrophysics Data System (ADS)

Hou, Zhenyong; Huang, Zhenghua; Xia, Lidong; Li, Bo; Fu, Hui

2018-03-01

We present observations of persistent oscillations of some bright features in the upper-chromosphere/transition region above sunspots taken by IRIS SJ 1400 Å and upward propagating quasi-periodic disturbances along coronal loops rooted in the same region taken by the AIA 171 Å passband. The oscillations of the features are cyclic oscillatory motions without any obvious damping. The amplitudes of the spatial displacements of the oscillations are about 1″. The apparent velocities of the oscillations are comparable to the sound speed in the chromosphere, but the upward motions are slightly larger than that of the downward. The intensity variations can take 24%–53% of the background, suggesting nonlinearity of the oscillations. The FFT power spectra of the oscillations show a dominant peak at a period of about 3 minutes, which is consistent with the omnipresent 3 minute oscillations in sunspots. The amplitudes of the intensity variations of the upward propagating coronal disturbances are 10%–15% of the background. The coronal disturbances have a period of about 3 minutes, and propagate upward along the coronal loops with apparent velocities in a range of 30 ∼ 80 km s‑1. We propose a scenario in which the observed transition region oscillations are powered continuously by upward propagating shocks, and the upward propagating coronal disturbances can be the recurrent plasma flows driven by shocks or responses of degenerated shocks that become slow magnetic-acoustic waves after heating the plasma in the coronal loops at their transition-region bases.

Hydrogeology of the Tully Trough in Southern Onondaga County and Northern Cortland County, New York

USGS Publications Warehouse

Kappel, William M.; Miller, Todd S.

2003-01-01

A trough valley near Tully, N.Y. was formed by the same glacial processes that formed the Finger Lake valleys to the west. Glacial ice eroded a preglacial bedrock divide along the northern rim of the Allegheny Plateau and deepened a preglacial valley to form a trough valley. Subsequent meltwater issuing from the ice transported and deposited large amounts of sediment which partly filled the trough. The Tully trough contains three distinct segments—the West Branch valley of the southward-flowing Tioughnioga River in the south, the Valley Heads Moraine near Tully, and the Tully valley of the northward-flowing Onondaga Creek in the north.The West Branch valley segment south of the moraine contains a two-aquifer system—a surficial unconfined sand and gravel aquifer and a confined basal sand and gravel aquifer that rests on bedrock, separated by a thick, fine-grained glaciolacustrine fine sand, silt, and clay unit. Water quality in the surficial aquifer is generally good, although it is typically hard. Water in the basal, confined aquifer is more mineralized and yields less water to wells than the surficial aquifer.The Valley Heads Moraine near Tully consists of layers of sand and gravel, fine sand, silt, clay, and till. The land surface contains many kettle-hole lakes, ponds, wetlands, and dry depressions. The moraine contains several aquifers, some of which are discontinuous. Water quality in the shallow aquifers is generally good, although hard. Water quality in the deep aquifer is generally good, although slightly mineralized by water discharging upward from shale.The Tully valley segment north of the moraine has a confined basal sand-and-gravel aquifer that is overlain by a thick layer of lacustrine silt and clay in the southern part of the valley and becomes interlayered with sand and some fine gravel in the northern part. Most homeowners obtain their water supply from streams or springs along the valley walls or from wells. Water from wells completed in coarse-grained sediment on the north side of the moraine and from the basal aquifer is generally fresh, but water from deep wells finished in the basal aquifer north of Solvay Road contains high concentrations of sodium chloride and calcium sulfate that presumably leached from halite and gypsum minerals within the bedrock.

Genome Sequence of the Native Apiculate Wine Yeast Hanseniaspora vineae T02/19AF

PubMed Central

Giorello, Facundo M.; Berná, Luisa; Greif, Gonzalo; Camesasca, Laura; Salzman, Valentina; Medina, Karina; Robello, Carlos; Gaggero, Carina; Aguilar, Pablo S.

2014-01-01

The use of novel yeast strains for winemaking improves quality and provides variety including subtle characteristic differences in fine wines. Here we report the first genome of a yeast strain native to Uruguay, Hanseniaspora vineae T02/19AF, which has been shown to positively contribute to aroma and wine quality. PMID:24874663

13 CFR 140.2 - What is a debt and how can the SBA collect it through offset?

Code of Federal Regulations, 2010 CFR

2010-01-01

... from fees, leases, rents, royalties, services, sales of real or personal property, overpayments, fines... the debtor agrees in writing to a greater percentage. (ii) SBA also may collect against travel... additional action against the debtor to collect the debt at the same time or in sequence. When SBA makes...

Review of Measurement Instruments and Procedures for Assessing Reach and Grasp Behaviors: Implications for Quantitative Measurement.

ERIC Educational Resources Information Center

Mulligan, Marilyn

The underlying theme of this review is that fine motor assessment for skills acquired during the first year of life includes a description of the coordination of reach and grasp behaviors into functional understanding, purposeful retention of an object, and manipulatian. The developmental sequence of these responses is listed in various…

The Impacts of Regular Upward Bound on Postsecondary Outcomes Seven to Nine Years after Scheduled High School Graduation. Final Report

ERIC Educational Resources Information Center

Seftor, Neil S.; Mamun, Arif; Schirm, Allen

2009-01-01

This last report from Mathematica's evaluation of Upward Bound analyzes data from the final round of survey and transcript data collection as well as administrative records from the National Student Clearinghouse and the federal Student Financial Aid files. It provides the first estimates of the effects of Upward Bound on postsecondary completion.…

The Impacts of Upward Bound Math-Science on Postsecondary Outcomes 7-9 Years after Scheduled High School Graduation: Final Report

ERIC Educational Resources Information Center

Seftor, Neil S.; Calcagno, Juan Carlos

2010-01-01

This final report updates the report "Upward Bound Math-Science: Program Description and Interim Impact Estimates" published in 2007 (Olsen et al. 2007). The 2007 interim report contained descriptive findings from a survey of Upward Bound Math-Science (UBMS) grantees from the late 1990s at the time of the study's initiation and impact estimates…

P-polarized reflectance spectroscopy: A high sensitive real-time monitoring technique to study surface kinetics under steady state epitaxial deposition conditions

NASA Technical Reports Server (NTRS)

Dietz, Nikolaus; Bachmann, Klaus J.

1995-01-01

This paper describes the results of real-time optical monitoring of epitaxial growth processes by p-polarized reflectance spectroscopy (PRS) using a single wavelength application under pulsed chemical beam epitaxy (PCBE) condition. The high surface sensitivity of PRS allows the monitoring of submonolayer precursors coverage on the surface as shown for GaP homoepitaxy and GaP on Si heteroepitaxy as examples. In the case of heteroepitaxy, the growth rate and optical properties are revealed by PRS using interference oscillations as they occur during growth. Super-imposed on these interference oscillations, the PRS signal exhibits a fine structure caused by the periodic alteration of the surface chemistry by the pulsed supply of chemical precursors. This fine structure is modeled under conditions where the surface chemistry cycles between phosphorus supersaturated and phosphorus depleted surfaces. The mathematical model describes the fine structure using a surface layer that increases during the tertiarybutyl phosphine (TBP) supply and decreases during and after the triethylgallium (TEG) pulse, which increases the growing GaP film thickness. The imaginary part of the dielectric function of the surface layer is revealed from the turning points in the fine structure, where the optical response to the first precursor pulse in the cycle sequence changes sign. The amplitude of the fine structure is determined by the surface layer thickness and the complex dielectric functions for the surface layer with the underlying bulk film. Surface kinetic data can be obtained by analyzing the rise and decay transients of the fine structure.

Fine-Scale Bacterial Beta Diversity within a Complex Ecosystem (Zodletone Spring, OK, USA): The Role of the Rare Biosphere

PubMed Central

Youssef, Noha H.; Couger, M. B.; Elshahed, Mostafa S.

2010-01-01

Background The adaptation of pyrosequencing technologies for use in culture-independent diversity surveys allowed for deeper sampling of ecosystems of interest. One extremely well suited area of interest for pyrosequencing-based diversity surveys that has received surprisingly little attention so far, is examining fine scale (e.g. micrometer to millimeter) beta diversity in complex microbial ecosystems. Methodology/Principal Findings We examined the patterns of fine scale Beta diversity in four adjacent sediment samples (1mm apart) from the source of an anaerobic sulfide and sulfur rich spring (Zodletone spring) in southwestern Oklahoma, USA. Using pyrosequencing, a total of 292,130 16S rRNA gene sequences were obtained. The beta diversity patterns within the four datasets were examined using various qualitative and quantitative similarity indices. Low levels of Beta diversity (high similarity indices) were observed between the four samples at the phylum-level. However, at a putative species (OTU0.03) level, higher levels of beta diversity (lower similarity indices) were observed. Further examination of beta diversity patterns within dominant and rare members of the community indicated that at the putative species level, beta diversity is much higher within rare members of the community. Finally, sub-classification of rare members of Zodletone spring community based on patterns of novelty and uniqueness, and further examination of fine scale beta diversity of each of these subgroups indicated that members of the community that are unique, but non novel showed the highest beta diversity within these subgroups of the rare biosphere. Conclusions/Significance The results demonstrate the occurrence of high inter-sample diversity within seemingly identical samples from a complex habitat. We reason that such unexpected diversity should be taken into consideration when exploring gamma diversity of various ecosystems, as well as planning for sequencing-intensive metagenomic surveys of highly complex ecosystems. PMID:20865128

Historical feature pattern extraction based network attack situation sensing algorithm.

PubMed

Zeng, Yong; Liu, Dacheng; Lei, Zhou

2014-01-01

The situation sequence contains a series of complicated and multivariate random trends, which are very sudden, uncertain, and difficult to recognize and describe its principle by traditional algorithms. To solve the above questions, estimating parameters of super long situation sequence is essential, but very difficult, so this paper proposes a situation prediction method based on historical feature pattern extraction (HFPE). First, HFPE algorithm seeks similar indications from the history situation sequence recorded and weighs the link intensity between occurred indication and subsequent effect. Then it calculates the probability that a certain effect reappears according to the current indication and makes a prediction after weighting. Meanwhile, HFPE method gives an evolution algorithm to derive the prediction deviation from the views of pattern and accuracy. This algorithm can continuously promote the adaptability of HFPE through gradual fine-tuning. The method preserves the rules in sequence at its best, does not need data preprocessing, and can track and adapt to the variation of situation sequence continuously.

Historical Feature Pattern Extraction Based Network Attack Situation Sensing Algorithm

PubMed Central

Zeng, Yong; Liu, Dacheng; Lei, Zhou

2014-01-01

The situation sequence contains a series of complicated and multivariate random trends, which are very sudden, uncertain, and difficult to recognize and describe its principle by traditional algorithms. To solve the above questions, estimating parameters of super long situation sequence is essential, but very difficult, so this paper proposes a situation prediction method based on historical feature pattern extraction (HFPE). First, HFPE algorithm seeks similar indications from the history situation sequence recorded and weighs the link intensity between occurred indication and subsequent effect. Then it calculates the probability that a certain effect reappears according to the current indication and makes a prediction after weighting. Meanwhile, HFPE method gives an evolution algorithm to derive the prediction deviation from the views of pattern and accuracy. This algorithm can continuously promote the adaptability of HFPE through gradual fine-tuning. The method preserves the rules in sequence at its best, does not need data preprocessing, and can track and adapt to the variation of situation sequence continuously. PMID:24892054

Ancestry estimation and control of population stratification for sequence-based association studies.

PubMed

Wang, Chaolong; Zhan, Xiaowei; Bragg-Gresham, Jennifer; Kang, Hyun Min; Stambolian, Dwight; Chew, Emily Y; Branham, Kari E; Heckenlively, John; Fulton, Robert; Wilson, Richard K; Mardis, Elaine R; Lin, Xihong; Swaroop, Anand; Zöllner, Sebastian; Abecasis, Gonçalo R

2014-04-01

Estimating individual ancestry is important in genetic association studies where population structure leads to false positive signals, although assigning ancestry remains challenging with targeted sequence data. We propose a new method for the accurate estimation of individual genetic ancestry, based on direct analysis of off-target sequence reads, and implement our method in the publicly available LASER software. We validate the method using simulated and empirical data and show that the method can accurately infer worldwide continental ancestry when used with sequencing data sets with whole-genome shotgun coverage as low as 0.001×. For estimates of fine-scale ancestry within Europe, the method performs well with coverage of 0.1×. On an even finer scale, the method improves discrimination between exome-sequenced study participants originating from different provinces within Finland. Finally, we show that our method can be used to improve case-control matching in genetic association studies and to reduce the risk of spurious findings due to population structure.

Biostratigraphic sequence analysis of two Lower Miocene to Pliocene sections, Eastern Falcon, Northwestern Venezuela

DOE Office of Scientific and Technical Information (OSTI.GOV)

Diaz De Gamero, M.L.; Giffuni, G.; Castro Mora, M.

1993-02-01

The eastern region of the Falcon Basin in northwestern Venezuela comprises a thick sedimentary sequence deposited from a deep marine bathyal to neritic environment, ranging in age from the Middle Eocene to the Pliocene. A detailed biostratigraphic study (foraminifera and calcareous nannoplankton) was carried out in two sedimentary sequences outcropping in Cumarebo and Piritu, adjacent areas of eastern Falcon, representing: platform, slope and basinal settings. The Cumarebo section is continuous in the studied interval, from the Middle Miocene to the Pliocene. The Piritu section is continuous from the Lower to the lower Upper Miocene, terminating unconformably beneath a thin intervalmore » of middle Pliocene platform sediments, indicating tectonism during the latest Miocene. The sequence stratigraphical interpretation was based on the biostratigraphic analysis of the benthic and planktonic fossils, facies distribution and sedimentological data. Systems tracts, sequence boundaries and maximum flooding surfaces from cycles TB2.4 to TB3.5 of the cycle chart were identified. In the Cumarebo section, the upper Middle and Upper Miocene is mostly composed of shales, with some turbiditic sands belonging to a LSW system tract. The upper most Miocene contains a thick carbonate buildup (HST), and it is overlain by a Pliocene section that shallows upward from upper slope to outer shelf depositional environments. In the basinal (Piritu) section, most of the sediments are deep-water shales belonging to a LSW system tract, with some turbiditic sands in the upper Lower Miocene. TST and HST sediments, with scattered carbonate buildups in the upper Middle Miocene were also identified.« less

Influence of F0 and Sequence Length of Audio and Electroglottographic Signals on Perturbation Measures for Voice Assessment.

PubMed

Hohm, Julian; Döllinger, Michael; Bohr, Christopher; Kniesburges, Stefan; Ziethe, Anke

2015-07-01

Within the functional assessment of voice disorders, an objective analysis of measured parameters from audio, electroglottographic (EGG), or visual signals is desired. In a typical clinical situation, reliable objective analysis is not always possible due to missing standardization and unknown stability of the clinical parameters. The aim of this study was to investigate the robustness/stability of measured clinical parameters of the audio and EGG signals in a typical clinical setting to ensure a reliable objective analysis. In particular, the influence of F0 and of the sequence length on several definitions of jitter and shimmer will be analyzed. Seventy-four young healthy women produced a sustained vowel /a/ and an upward triad with abrupt changeovers. Different sequence lengths (100, 150, 500, and 1000 ms) of sustained phonation and triads (100 and 150 ms) were extracted from the audio and EGG signals. In total, six variations of jitter and four variations of shimmer parameters were analyzed. Jitter%, Jitter11p, and JitterPPQ of the audio signal as well as Jittermean, Shimmer, and Shimmer11p of the EGG signal are unaffected by both sequence length and F0. Influence of F0 and sequence length on several perturbation measures of the audio and EGG signals was identified. For an objective clinical voice assessment, unaffected definitions of jitter and shimmer should be preferred and applied to enable comparability between different recordings, examinations, and studies. Copyright © 2015 The Voice Foundation. Published by Elsevier Inc. All rights reserved.

Cyclicity in Upper Mississippian Bangor Limestone, Blount County, Alabama

DOE Office of Scientific and Technical Information (OSTI.GOV)

Bronner, R.L.

1988-01-01

The Upper Mississippian (Chesterian) Bangor Limestone in Alabama consists of a thick, complex sequence of carbonate platform deposits. A continuous core through the Bangor on Blount Mountain in north-central Alabama provides the opportunity to analyze the unit for cyclicity and to identify controls on vertical facies sequence. Lithologies from the core represent four general environments of deposition: (1) subwave-base, open marine, (2) shoal, (3) lagoon, and (4) peritidal. Analysis of the vertical sequence of lithologies in the core indicates the presence of eight large-scale cycles dominated by subtidal deposits, but defined on the basis of peritidal caps. These large-scale cyclesmore » can be subdivided into 16 small-scale cycles that may be entirely subtidal but illustrate upward shallowing followed by rapid deepening. Large-scale cycles range from 33 to 136 ft thick, averaging 68 ft; small-scale cycles range from 5 to 80 ft thick and average 34 ft. Small-scale cycles have an average duration of approximately 125,000 years, which is compatible with Milankovitch periodicity. The large-scale cycles have an average duration of approximately 250,000 years, which may simply reflect variations in amplitude of sea level fluctuation or the influence of tectonic subsidence along the southeastern margin of the North American craton.« less

Water-quality trends in the Scituate reservoir drainage area, Rhode Island, 1983-2012

USGS Publications Warehouse

Smith, Kirk P.

2015-01-01

Upward trends in pH were identified for nearly half of the monitoring stations for WYs 1983-2012 and may reflect regional reductions in acid precipitation. Many upward trends in alkalinity also were identified for both the WYs 1983-2012 and for WYs 2003-12 periods and are likely related to the natural weathering of structures containing concrete or, in some cases, the application of lime or fertilizers on agriculture lands. Significant trends in chloride concentrations at most stations during WYs 1983-2012 were upward; however, results for WYs 2003-12 substantiate few significant upward trends and, in a few cases, downward trends were identified in several tributary drainage areas.

Dynamic Fragmentation of Jointed Rock Blocks During Rockslide-Avalanches: Insights From Discrete Element Analyses

NASA Astrophysics Data System (ADS)

Zhao, Tao; Crosta, Giovanni Battista; Dattola, Giuseppe; Utili, Stefano

2018-04-01

The dynamic fragmentation of jointed rock blocks during rockslide avalanches has been investigated by discrete element method simulations for a multiple arrangement of a rock block sliding over a simple slope geometry. The rock blocks are released along an inclined sliding plane and subsequently collide onto a flat horizontal plane at a sharp kink point. The contact force chains generated by the impact appear initially at the bottom frontal corner of the rock block and then propagate radially upward to the top rear part of the block. The jointed rock blocks exhibit evident contact force concentration and discontinuity of force wave propagation near the joint, associating with high energy dissipation of granular dynamics. The corresponding force wave propagation velocity can be less than 200 m/s, which is much smaller than that of an intact rock (1,316 m/s). The concentration of contact forces at the bottom leads to high rock fragmentation intensity and momentum boosts, facilitating the spreading of many fine fragments to the distal ends. However, the upper rock block exhibits very low rock fragmentation intensity but high energy dissipation due to intensive friction and damping, resulting in the deposition of large fragments near the slope toe. The size and shape of large fragments are closely related to the orientation and distribution of the block joints. The cumulative fragment size distribution can be well fitted by the Weibull's distribution function, with very gentle and steep curvatures at the fine and coarse size ranges, respectively. The numerical results of fragment size distribution can match well some experimental and field observations.

Water quality in Indiana: trends in concentrations of selected nutrients, metals, and ions in streams, 2000-10

USGS Publications Warehouse

Risch, Martin R.; Bunch, Aubrey R.; Vecchia, Aldo V.; Martin, Jeffrey D.; Baker, Nancy T.

2014-01-01

Statistically significant trends were identified that included 167 downward trends and 83 upward trends. The Kankakee River Basin had the most significant upward trends while the most significant downward trends were in the Whitewater River Basin, the Lake Michigan Basin, and the Patoka River Basin. For most constituents, a majority of sites had significant downward trends. Two streams in the Lake Michigan Basin have shown substantial decreases in most constituents. The West Fork White River near Indianapolis, Indiana, showed increases in nitrate and phosphorus and the Kankakee River Basin showed increases in copper, zinc, chloride, sulfate, and hardness. Upward trends in nutrients were identified at a few sites, but most nutrient trends were downward. Upward trends in metals corresponded with relatively small concentration increases while downward trends involved considerably larger concentration changes. Downward trends in chloride, sulfate, and suspended solids were observed statewide, but upward trends in hardness were observed in the northern half of Indiana.

Physical mechanism and numerical simulation of the inception of the lightning upward leader

DOE Office of Scientific and Technical Information (OSTI.GOV)

Li Qingmin; Lu Xinchang; Shi Wei

2012-12-15

The upward leader is a key physical process of the leader progression model of lightning shielding. The inception mechanism and criterion of the upward leader need further understanding and clarification. Based on leader discharge theory, this paper proposes the critical electric field intensity of the stable upward leader (CEFISUL) and characterizes it by the valve electric field intensity on the conductor surface, E{sub L}, which is the basis of a new inception criterion for the upward leader. Through numerical simulation under various physical conditions, we verified that E{sub L} is mainly related to the conductor radius, and data fitting yieldsmore » the mathematical expression of E{sub L}. We further establish a computational model for lightning shielding performance of the transmission lines based on the proposed CEFISUL criterion, which reproduces the shielding failure rate of typical UHV transmission lines. The model-based calculation results agree well with the statistical data from on-site operations, which show the effectiveness and validity of the CEFISUL criterion.« less

Adaptive efficient compression of genomes

PubMed Central

2012-01-01

Modern high-throughput sequencing technologies are able to generate DNA sequences at an ever increasing rate. In parallel to the decreasing experimental time and cost necessary to produce DNA sequences, computational requirements for analysis and storage of the sequences are steeply increasing. Compression is a key technology to deal with this challenge. Recently, referential compression schemes, storing only the differences between a to-be-compressed input and a known reference sequence, gained a lot of interest in this field. However, memory requirements of the current algorithms are high and run times often are slow. In this paper, we propose an adaptive, parallel and highly efficient referential sequence compression method which allows fine-tuning of the trade-off between required memory and compression speed. When using 12 MB of memory, our method is for human genomes on-par with the best previous algorithms in terms of compression ratio (400:1) and compression speed. In contrast, it compresses a complete human genome in just 11 seconds when provided with 9 GB of main memory, which is almost three times faster than the best competitor while using less main memory. PMID:23146997

Advances in Cryptococcus genomics: insights into the evolution of pathogenesis.

PubMed

Cuomo, Christina A; Rhodes, Johanna; Desjardins, Christopher A

2018-01-01

Cryptococcus species are the causative agents of cryptococcal meningitis, a significant source of mortality in immunocompromised individuals. Initial work on the molecular epidemiology of this fungal pathogen utilized genotyping approaches to describe the genetic diversity and biogeography of two species, Cryptococcus neoformans and Cryptococcus gattii. Whole genome sequencing of representatives of both species resulted in reference assemblies enabling a wide array of downstream studies and genomic resources. With the increasing availability of whole genome sequencing, both species have now had hundreds of individual isolates sequenced, providing fine-scale insight into the evolution and diversification of Cryptococcus and allowing for the first genome-wide association studies to identify genetic variants associated with human virulence. Sequencing has also begun to examine the microevolution of isolates during prolonged infection and to identify variants specific to outbreak lineages, highlighting the potential role of hyper-mutation in evolving within short time scales. We can anticipate that further advances in sequencing technology and sequencing microbial genomes at scale, including metagenomics approaches, will continue to refine our view of how the evolution of Cryptococcus drives its success as a pathogen.

Upside-down spiders build upside-down orb webs: web asymmetry, spider orientation and running speed in Cyclosa.

PubMed

Nakata, Kensuke; Zschokke, Samuel

2010-10-07

Almost all spiders building vertical orb webs face downwards when sitting on the hubs of their webs, and their webs exhibit an up-down size asymmetry, with the lower part of the capture area being larger than the upper. However, spiders of the genus Cyclosa, which all build vertical orb webs, exhibit inter- and intraspecific variation in orientation. In particular, Cyclosa ginnaga and C. argenteoalba always face upwards, and C. octotuberculata always face downwards, whereas some C. confusa face upwards and others face downwards or even sideways. These spiders provide a unique opportunity to examine why most spiders face downwards and have asymmetrical webs. We found that upward-facing spiders had upside-down webs with larger upper parts, downward-facing spiders had normal webs with larger lower parts and sideways-facing spiders had more symmetrical webs. Downward-facing C. confusa spiders were larger than upward- and sideways-facing individuals. We also found that during prey attacks, downward-facing spiders ran significantly faster downwards than upwards, which was not the case in upward-facing spiders. These results suggest that the spider's orientation at the hub and web asymmetry enhance its foraging efficiency by minimizing the time to reach prey trapped in the web.

Upside-down spiders build upside-down orb webs: web asymmetry, spider orientation and running speed in Cyclosa

PubMed Central

Nakata, Kensuke; Zschokke, Samuel

2010-01-01

Almost all spiders building vertical orb webs face downwards when sitting on the hubs of their webs, and their webs exhibit an up–down size asymmetry, with the lower part of the capture area being larger than the upper. However, spiders of the genus Cyclosa, which all build vertical orb webs, exhibit inter- and intraspecific variation in orientation. In particular, Cyclosa ginnaga and C. argenteoalba always face upwards, and C. octotuberculata always face downwards, whereas some C. confusa face upwards and others face downwards or even sideways. These spiders provide a unique opportunity to examine why most spiders face downwards and have asymmetrical webs. We found that upward-facing spiders had upside-down webs with larger upper parts, downward-facing spiders had normal webs with larger lower parts and sideways-facing spiders had more symmetrical webs. Downward-facing C. confusa spiders were larger than upward- and sideways-facing individuals. We also found that during prey attacks, downward-facing spiders ran significantly faster downwards than upwards, which was not the case in upward-facing spiders. These results suggest that the spider's orientation at the hub and web asymmetry enhance its foraging efficiency by minimizing the time to reach prey trapped in the web. PMID:20462900

Upward counterfactual thinking and depression: A meta-analysis.

PubMed

Broomhall, Anne Gene; Phillips, Wendy J; Hine, Donald W; Loi, Natasha M

2017-07-01

This meta-analysis examined the strength of association between upward counterfactual thinking and depressive symptoms. Forty-two effect sizes from a pooled sample of 13,168 respondents produced a weighted average effect size of r=.26, p<.001. Moderator analyses using an expanded set of 96 effect sizes indicated that upward counterfactuals and regret produced significant positive effects that were similar in strength. Effects also did not vary as a function of the theme of the counterfactual-inducing situation or study design (cross-sectional versus longitudinal). Significant effect size heterogeneity was observed across sample types, methods of assessing upward counterfactual thinking, and types of depression scale. Significant positive effects were found in studies that employed samples of bereaved individuals, older adults, terminally ill patients, or university students, but not adolescent mothers or mixed samples. Both number-based and Likert-based upward counterfactual thinking assessments produced significant positive effects, with the latter generating a larger effect. All depression scales produced significant positive effects, except for the Psychiatric Epidemiology Research Interview. Research and theoretical implications are discussed in relation to cognitive theories of depression and the functional theory of upward counterfactual thinking, and important gaps in the extant research literature are identified. Copyright © 2017 Elsevier Ltd. All rights reserved.

Quantitative controls on location and architecture of carbonate depositional sequences: Upper miocene, cabo de gata region, SE Spain

USGS Publications Warehouse

Franseen, E.K.; Goldstein, R.H.; Farr, M.R.

1997-01-01

Sequence stratigraphy, pinning-point relative sea-level curves, and magnetostratigraphy provide the quantitative data necessary to understand how rates of sea-level change and different substrate paleoslopes are dominant controls on accumulation rate, carbonate depositional sequence location, and internal architecture. Five third-order (1-10 my) and fourth-order (0.1-1.0 my) upper Miocene carbonate depositional sequences (DS1A, DS1B, DS2, DS3, TCC) formed with superimposed higher-frequency sea-level cycles in an archipelago setting in SE Spain. Overall, our study indicates when areas of high substrate slope (> 15??) are in shallow water, independent of climate, the location and internal architecture of carbonate deposits are not directly linked to sea-level position but, instead, are controlled by location of gently sloping substrates and processes of bypass. In contrast, if carbonate sediments are generated where substrates of low slope ( 15.6 cm/ky to ??? 2 cm/ky and overall relative sea level rose at rates of 17-21.4 cm/ky. Higher frequency sea-level rates were about 111 to more than 260 cm/ky, producing onlapping, fining- (deepening-) upward cycles. Decreasing accumulation rates resulted from decreasing surface area for shallow-water sediment production, drowning of shallow-water substrates, and complex sediment dispersal related to the archipelago setting. Typical systems tract and parasequence development should not be expected in "bypass ramp" settings; facies of onlapping strata do not track base level and are likely to be significantly different compared to onlapping strata associated with coastal onlap. Basal and upper DS2 reef megabreccias (indicating the transition from cool to warmer climatic conditions) were eroded from steep upslope positions and redeposited downslope onto areas of gentle substrate during rapid sea-level falls (> 22.7 cm/ky) of short duration. Such rapid sea-level falls and presence of steep slopes are not conducive to formation of forced regressive systems tracts composed of down-stepping reef clinoforms. The DS3 reefal platform formed where shallow water coincided with gently sloping substrates created by earlier deposition. Slow progradation (0.39-1.45 km/my) is best explained by the lack of an extensive bank top, progressively falling sea level, and low productivity resulting from siliciclastic debris and excess nutrients shed from nearby volcanic islands. Although DS3 strata were deposited during a third-order relative sea-level cycle, a typical transgressive systems tract is not recognizable, indicating that the initial relative rise in sea level was too rapid (??? 19 cm/ky). Downstepping reefs, forming a forced regressive systems tract, were deposited during the relative sea-level fall at the end of DS3, indicating that relatively slow rates of fall (10 cm/ky or less) over favorable paleoslope conditions are conducive to generation of forced regressive systems tracts consisting of downstepping reef clinoforms. The TCC sequence consists of four shallow-water sedimentary cycles that were deposited during a 400 ky to 100 ky time span. Such shallow-water cycles, typical of many platforms, form only where shallow water intersects gently sloping substrates. The relative thicknesses of cycles (< 2 m to 15 m thick), magnitudes of relative sea-level fluctuations associated with each cycle (25-30 m), high rates of relative sea-level fluctuations (minimum of 25-120 cm/ky), and the widespread distribution of similar TCC cycles in the Mediterranean and elsewhere are supportive of a glacio-eustatic

Quantitative controls on location and architecture of carbonate depositional sequences: upper miocene, cabo de gata region, se Spain

USGS Publications Warehouse

Franseen, E.K.; Goldstein, R.H.; Farr, M.R.

1998-01-01

Sequence stratigraphy, pinning-point relative sea-level curves, and magnetostratigraphy provide the quantitative data necessary to understand how rates of sea-level change and different substrate paleoslopes are dominant controls on accumulation rate, carbonate depositional sequence location, and internal architecture. Five third-order (1-10 my) and fourth-order (0.1-1.0 my) upper Miocene carbonate depositional sequences (DS1A, DS1B, DS2, DS3, TCC) formed with superimposed higher-frequency sea-level cycles in an archipelago setting in SE Spain. Overall, our study indicates when areas of high substrate slope (> 15??) are in shallow water, independent of climate, the location and internal architecture of carbonate deposits are not directly linked to sea-level position but, instead, are controlled by location of gently sloping substrates and processes of bypass. In contrast, if carbonate sediments are generated where substrates of low slope ( 15.6 cm/ky to ??? 2 cm/ky and overall relative sea level rose at rates of 17-21.4 cm/ky. Higher frequency sea-level rates were about 111 to more than 260 cm/ky, producing onlapping, fining- (deepening-) upward cycles. Decreasing accumulation rates resulted from decreasing surface area for shallow-water sediment production, drowning of shallow-water substrates, and complex sediment dispersal related to the archipelago setting. Typical systems tract and parasequence development should not be expected in "bypass ramp" settings; facies of onlapping strata do not track base level and are likely to be significantly different compared to onlapping strata associated with coastal onlap. Basal and upper DS2 reef megabreccias (indicating the transition from cool to warmer climatic conditions) were eroded from steep upslope positions and redeposited downslope onto areas of gentle substrate during rapid sea-level falls (> 22.7 cm/ky) of short duration. Such rapid sea-level falls and presence of steep slopes are not conducive to formation of forced regressive systems tracts composed of downstepping reef clinoforms. The DS3 reefal platform formed where shallow water coincided with gently sloping substrates created by earlier deposition. Slow progradation (0.39-1.45 km/my) is best explained by the lack of an extensive bank top, progressively falling sea level, and low productivity resulting from siliciclastic debris and excess nutrients shed from nearby volcanic islands. Although DS3 strata were deposited during a third-order relative sea-level cycle, a typical transgresse??e systems tract is not recognizable, indicating that the initial relative rise in sea level was too rapid (??? 19 cm/ky). Downstepping reefs, forming a forced regressive systems tract, were deposited during the relative sea-level fall at the end of DS3, indicating that relatively slow rates of fall (10 cm/ky or less) over favorable paleoslope conditions are conducive to generation of forced regressive systems tracts consisting of downstepping reef clinoforms. The TCC sequence consists of four shallow -water sedimentary cycles that were deposited during a 400 ky to 100 ky time span. Such shallow-water cycles, typical of many platforms, form only where shallow water intersects gently sloping substrates. The relative thicknesses of cycles (< 2 m to 15 m thick), magnitudes of relative sea-level fluctuations associated with each cycle (25-30 m), high rates of relative sea-level fluctuations (minimum of 25-120 cm/ky), and the widespread distribution of similar TCC cycles in the Mediterranean and elsewhere are supportive of a glacio-eustati

Circum-Pacific accretion of oceanic terranes to continental blocks: accretion of the Early Permian Dun Mountain ophiolite to the E Gondwana continental margin, South Island, New Zealand

NASA Astrophysics Data System (ADS)

Robertson, Alastair

2016-04-01

Accretionary orogens, in part, grow as a result of the accretion of oceanic terranes to pre-existing continental blocks, as in the circum-Pacific and central Asian regions. However, the accretionary processes involved remain poorly understood. Here, we consider settings in which oceanic crust formed in a supra-subduction zone setting and later accreted to continental terranes (some, themselves of accretionary origin). Good examples include some Late Cretaceous ophiolites in SE Turkey, the Jurassic Coast Range ophiolite, W USA and the Early Permian Dun Mountain ophiolite of South Island, New Zealand. In the last two cases, the ophiolites are depositionally overlain by coarse clastic sedimentary rocks (e.g. Permian Upukerora Formation of South Island, NZ) that then pass upwards into very thick continental margin fore-arc basin sequences (Great Valley sequence, California; Matai sequence, South Island, NZ). Field observations, together with petrographical and geochemical studies in South Island, NZ, summarised here, provide evidence of terrane accretion processes. In a proposed tectonic model, the Early Permian Dun Mountain ophiolite was created by supra-subduction zone spreading above a W-dipping subduction zone (comparable to the present-day Izu-Bonin arc and fore arc, W Pacific). The SSZ oceanic crust in the New Zealand example is inferred to have included an intra-oceanic magmatic arc, which is no longer exposed (other than within a melange unit in Southland), but which is documented by petrographic and geochemical evidence. An additional subduction zone is likely to have dipped westwards beneath the E Gondwana margin during the Permian. As a result, relatively buoyant Early Permian supra-subduction zone oceanic crust was able to dock with the E Gondwana continental margin, terminating intra-oceanic subduction (although the exact timing is debatable). The amalgamation ('soft collision') was accompanied by crustal extension of the newly accreted oceanic slab, and also resulted in the formation of the overlying Maitai continental margin fore-arc basin (possibly related to rollback or a decrease in dip of the remaining subduction zone).Very coarse clastic material (up to ca. 700 m thick) including detached blocks of basaltic and gabbroic rocks, up to tens or metres in size (or more), was shed down fault scarps from relatively shallow water into a deeper water setting by gravity flow processes, ranging from rock fall, to debris flow, to turbidity currents. In addition, relatively fine-grained volcaniclastic-terrigenous sediment was input from an E Gondwana continental margin arc in the form of distal gravity flows, as indicated by geochemical data (e.g. Rare Earth Element analysis of sandstones and shales). The lowest part of the overlying Maitai fore-arc sequence in some areas is represented by hundreds of metres-thick sequences of mixed carbonate-volcaniclastic-terrigenous gravity flows (Wooded Peak Fm.), which are interpreted to have been derived from the E Gondwana continental margin and which finally accumulated in fault-controlled depocentres. Input of shallow-water carbonate material later waned and the Late Permian-Triassic Maitai fore-arc basin was dominated by gravity flows that were largely derived from a contemporaneous continental margin arc (partially preserved in present SE Australia). Subsequent tectonic deformation included on-going subduction, strike-slip and terrane accretion. The sedimentary covers of comparable accreted ophiolites elsewhere (e.g. Coast Range ophiolite, California) may reveal complementary evidence of fundamental terrane accretion processes. Acknowledgements: Hamish Campbell, Dave Craw, Mike Johnson, Chuck Landis, Nick Mortimer, Dhana Pillai and other members of the South Island geological research community

Effects of scapular upward rotation exercises on alignment of scapula and clavicle and strength of scapular upward rotators in subjects with scapular downward rotation syndrome.

PubMed

Ha, Sung-min; Kwon, Oh-yun; Yi, Chung-hwi; Cynn, Heon-seock; Weon, Jong-hyuck; Kim, Tae-ho

2016-02-01

The purpose of this study was to investigate the effects of a 6-week scapular upward rotation exercise (SURE) on scapular and clavicular alignment and scapular upward rotators strength in subjects with scapular downward rotation syndrome (SDRS). Seventeen volunteer subjects with SDRS were recruited from university populations. The alignment of the scapula and clavicle was measured using radiographic analysis and compared in subjects before and after a 6-week self-SURE program. A hand-held dynamometer was used to measure the strength of the scapular upward rotators. The subjects were instructed how to perform the self-SURE program at home. The 6-week self-SURE program was divided into two sections (the first section with non-resistive SURE during weeks 1-3, and the second section with resistive SURE using thera-band during weeks 4-6). The significance of the difference between pre- and post-program was assessed using a paired t-test, with the level of statistical significance set at p<0.05. Significant differences between pre- and post-program were found for scapular and clavicular alignment (p<0.05). Additionally, the comparison between pre- and post-program measurements of the strength of the scapular upward rotators showed significant differences (p<0.05). The results of this study showed that a 6-week self-SURE program is effective for improving scapular and clavicular alignment and increasing the strength of scapular upward rotator muscles in subjects with SDRS. Copyright © 2015 Elsevier Ltd. All rights reserved.

Fine Physical and Genetic Mapping of Powdery Mildew Resistance Gene MlIW172 Originating from Wild Emmer (Triticum dicoccoides)

PubMed Central

Han, Jun; Zhao, Xiaojie; Cui, Yu; Song, Wei; Huo, Naxin; Liang, Yong; Xie, Jingzhong; Wang, Zhenzhong; Wu, Qiuhong; Chen, Yong-Xing; Lu, Ping; Zhang, De-Yun; Wang, Lili; Sun, Hua; Yang, Tsomin; Keeble-Gagnere, Gabriel; Appels, Rudi; Doležel, Jaroslav; Ling, Hong-Qing; Luo, Mingcheng; Gu, Yongqiang; Sun, Qixin; Liu, Zhiyong

2014-01-01

Powdery mildew, caused by Blumeria graminis f. sp. tritici, is one of the most important wheat diseases in the world. In this study, a single dominant powdery mildew resistance gene MlIW172 was identified in the IW172 wild emmer accession and mapped to the distal region of chromosome arm 7AL (bin7AL-16-0.86-0.90) via molecular marker analysis. MlIW172 was closely linked with the RFLP probe Xpsr680-derived STS marker Xmag2185 and the EST markers BE405531 and BE637476. This suggested that MlIW172 might be allelic to the Pm1 locus or a new locus closely linked to Pm1. By screening genomic BAC library of durum wheat cv. Langdon and 7AL-specific BAC library of hexaploid wheat cv. Chinese Spring, and after analyzing genome scaffolds of Triticum urartu containing the marker sequences, additional markers were developed to construct a fine genetic linkage map on the MlIW172 locus region and to delineate the resistance gene within a 0.48 cM interval. Comparative genetics analyses using ESTs and RFLP probe sequences flanking the MlIW172 region against other grass species revealed a general co-linearity in this region with the orthologous genomic regions of rice chromosome 6, Brachypodium chromosome 1, and sorghum chromosome 10. However, orthologous resistance gene-like RGA sequences were only present in wheat and Brachypodium. The BAC contigs and sequence scaffolds that we have developed provide a framework for the physical mapping and map-based cloning of MlIW172. PMID:24955773

Antibiotics reduce genetic diversity of core species in the honeybee gut microbiome.

PubMed

Raymann, Kasie; Bobay, Louis-Marie; Moran, Nancy A

2018-04-01

The gut microbiome plays a key role in animal health, and perturbing it can have detrimental effects. One major source of perturbation to microbiomes, in humans and human-associated animals, is exposure to antibiotics. Most studies of how antibiotics affect the microbiome have used amplicon sequencing of highly conserved 16S rRNA sequences, as in a recent study showing that antibiotic treatment severely alters the species-level composition of the honeybee gut microbiome. But because the standard 16S rRNA-based methods cannot resolve closely related strains, strain-level changes could not be evaluated. To address this gap, we used amplicon sequencing of protein-coding genes to assess effects of antibiotics on fine-scale genetic diversity of the honeybee gut microbiota. We followed the population dynamics of alleles within two dominant core species of the bee gut community, Gilliamella apicola and Snodgrassella alvi, following antibiotic perturbation. Whereas we observed a large reduction in genetic diversity in G. apicola, S. alvi diversity was mostly unaffected. The reduction in G. apicola diversity accompanied an increase in the frequency of several alleles, suggesting resistance to antibiotic treatment. We find that antibiotic perturbation can cause major shifts in diversity and that the extent of these shifts can vary substantially across species. Thus, antibiotics impact not only species composition, but also allelic diversity within species, potentially affecting hosts if variants with particular functions are reduced or eliminated. Overall, we show that amplicon sequencing of protein-coding genes, without clustering into operational taxonomic units, provides an accurate picture of the fine-scale dynamics of microbial communities over time. © 2017 John Wiley & Sons Ltd.

Physical properties of the surface materials at the Viking landing sites on Mars

USGS Publications Warehouse

Moore, H.J.; Hutton, R.E.; Clow, G.D.; Spitzer, C.R.

1987-01-01

This report summarizes the results of the Physical Properties Investigation of the Viking '75 Project, activities of the surface samplers, and relevant results from other investigations. The two Viking Landers operated for nearly four martian years after landing on July 20 (Lander 1) and Sept. 3 (Lander 2), 1976; Lander 1 acquired its last pictures on or about Nov. 5, 1982. Lander 1 rests on a smooth, cratered plain at the west edge of Chryse Planitia (22.5 ? N, 48.0? W), and Lander 2 rests 200 km west of the crater Mie in Utopia Planitia (48.0? N, 225.7? W). Lander 1 views showed that dune-like deposits of drift material were superposed on rock-strewn surfaces. Soil-like material from the rock-strewn areas was called blocky material. Lander 2 views also showed a rock-strewn surface. Polygonal to irregular features, etched by the wind, revealed crusty to cloddy material among rocks. Both landers descended to the surface along nearly vertical trajectories. Velocities at touchdown were about 2 m/s for both landers. Footpad 2 of Lander 1 penetrated drift material 0.165 m, and footpad 3 penetrated blocky material 0.036 m. The two visible footpads of Lander 2 struck rocks. Erosion by exhausts from the forward engines produced craters with rims of mixed fine-grained material and platy to equidimensional clods, crusts, and fragments. Comparison of engine-exhaust erosion on Mars with terrestrial data suggested that drift material behaved like a weakly cohesive material with a grain size less than 3-9 /-lm. Although not sand, blocky and crusty to cloddy materials eroded like sand-with grain sizes of 0.01 or 0.2 cm. The surface samplers accomplished an impressive number of tasks. All experiments that required samples received samples. Deep holes, as much as 0.22 m deep, were excavated by both landers. Lander 2 successfully pushed rocks and collected samples from areas originally beneath the rocks. Tasks specifically accomplished for the Physical Properties Investigation include: (1) acquiring motor-current data while excavating trenches, (2) performing surface-bearing tests, (3) performing backhoe touchdowns, (4) attempting to chip or scratch rocks, (5) comminuting samples, (6) measuring subsurface diurnal temperatures, and (7) constructing conical piles of materials on and among rocks. Sample trenches in the three major types of soil-like materials were different from one another. Trenches in drift material, which were typically 0.06 m deep, had steep walls along much of their lengths, lumpy tailings and floors, and smooth domed surfaces with sparse fine fractures around their tips. Trenches in blocky material, which were typically 0.03-0.04 m deep, had steep walls near their tips, and surfaces around their tips were displaced upward and some appeared blocky. Trenches in crusty to cloddy material, which were typically 0.04-0.05 m deep, had steep and often irregular slopes near their tips, clods and slabs of crust in their tailings, and disrupted areas around their tips composed of mixed fine-grained material and slabs of crust or thick polygonal clods that had been displaced upwards. Data acquired during landing, trenching, surface-bearing tests, backhoe touchdowns, and from other science experiments were used to determine the mechanical properties of drift, blocky, and crusty to cloddy materials. Drift material appeared to be very fine grained, with local planes of weakness; in general, the drift material was consistent with a material having an angle of internal friction about 18?, a cohesion ranging from 0.7 to 3.0 kPa, and a bulk density of 1,200 kg/m 3 . Blocky material was consistent with a material having an angle of internal friction about 30?, cohesions from 1.5 to 16 kPa, and a bulk density of 1,600 kg/m 3 . Crusty to cloddy material had variable properties. For chiefly crusty to cloddy material, angles of internal friction were about 35 ? , and cohesions were from 0.5 to 5.2 kPa. For mixed fines and crusts, a

Palaeoenvironments and palaeotectonics of the arid to hyperarid intracontinental latest Permian- late Triassic Solway basin (U.K.)

NASA Astrophysics Data System (ADS)

Brookfield, Michael E.

2008-10-01

The late Permian to late Triassic sediments of the Solway Basin consist of an originally flat-lying, laterally persistent and consistent succession of mature, dominantly fine-grained red clastics laid down in part of a very large intracontinental basin. The complete absence of body or trace fossils or palaeosols indicates a very arid (hyperarid) depositional environment for most of the sediments. At the base of the succession, thin regolith breccias and sandstones rest unconformably on basement and early Permian rift clastics. Overlying gypsiferous red silty mudstones, very fine sandstones and thick gypsum were deposited in either a playa lake or in a hypersaline estuary, and their margins. These pass upwards into thick-bedded, multi-storied, fine- to very fine-grained red quartzo-felspathic and sublithic arenites in which even medium sand is rare despite channels with clay pebbles up to 30 cm in diameter. Above, thick trough cross-bedded and parallel laminated fine-grained aeolian sandstones (deposited in extensive barchanoid dune complexes) pass up into very thick, multicoloured mudstones, and gypsum deposited in marginal marine or lacustrine sabkha environments. The latter pass up into marine Lower Jurassic shales and limestones. Thirteen non-marine clastic lithofacies are arranged into five main lithofacies associations whose facies architecture is reconstructed where possible by analysis of large exposures. The five associations can be compared with the desert pavement, arid ephemeral stream, sabkha, saline lake and aeolian sand dune environments of the arid to hyperarid areas of existing intracontinental basins such as Lake Eyre and Lake Chad. The accommodation space in such basins is controlled by gradual tectonic subsidence moderated by large fluctuations in shallow lake extent (caused by climatic change and local variation) and this promotes a large-scale layer-cake stratigraphy as exemplified in the Solway basin. Here, the dominant fine-grained mature sandstones above the local basal reg breccias suggest water-reworking of wind-transported sediment, as in the northern part of the Lake Chad basin. Growth faulting occurs in places in the Solway basin, caused by underlying evaporite movement, but these faults did not significantly affect pre-late Triassic sedimentation and did not expose pre-Permian units above the basal breccias. There is no evidence of post-early Permian rifting anywhere during deposition of the late Permian to middle Triassic British succession although the succession is often interpreted with a rift-basin model. The arid to hyperarid palaeoclimate changed little during deposition of the Solway basin succession, in contrast to Lakes Eyre and Chad: and this is attributed to tectonic and palaeolatitude stability. Unlike the later Mesozoic- Cenozoic, only limited plate movements took place during the Triassic in western Europe, palaeolatitude changed little, and the Solway Basin remained in the northern latitudinal desert belt from early to mid-Triassic times. However, the influence of the early Triassic impoverished biota on environmental interpretations needs further study.

Fine Mapping of a Clubroot Resistance Gene in Chinese Cabbage Using SNP Markers Identified from Bulked Segregant RNA Sequencing

PubMed Central

Huang, Zhen; Peng, Gary; Liu, Xunjia; Deora, Abhinandan; Falk, Kevin C.; Gossen, Bruce D.; McDonald, Mary R.; Yu, Fengqun

2017-01-01

Clubroot, caused by Plasmodiophora brassicae, is an important disease of canola (Brassica napus) in western Canada and worldwide. In this study, a clubroot resistance gene (Rcr2) was identified and fine mapped in Chinese cabbage cv. “Jazz” using single-nucleotide polymorphisms (SNP) markers identified from bulked segregant RNA sequencing (BSR-Seq) and molecular markers were developed for use in marker assisted selection. In total, 203.9 million raw reads were generated from one pooled resistant (R) and one pooled susceptible (S) sample, and >173,000 polymorphic SNP sites were identified between the R and S samples. One significant peak was observed between 22 and 26 Mb of chromosome A03, which had been predicted by BSR-Seq to contain the causal gene Rcr2. There were 490 polymorphic SNP sites identified in the region. A segregating population consisting of 675 plants was analyzed with 15 SNP sites in the region using the Kompetitive Allele Specific PCR method, and Rcr2 was fine mapped between two SNP markers, SNP_A03_32 and SNP_A03_67 with 0.1 and 0.3 cM from Rcr2, respectively. Five SNP markers co-segregated with Rcr2 in this region. Variants were identified in 14 of 36 genes annotated in the Rcr2 target region. The numbers of poly variants differed among the genes. Four genes encode TIR-NBS-LRR proteins and two of them Bra019410 and Bra019413, had high numbers of polymorphic variants and so are the most likely candidates of Rcr2. PMID:28894454

Quantizing and sampling considerations in digital phased-locked loops

NASA Technical Reports Server (NTRS)

Hurst, G. T.; Gupta, S. C.

1974-01-01

The quantizer problem is first considered. The conditions under which the uniform white sequence model for the quantizer error is valid are established independent of the sampling rate. An equivalent spectral density is defined for the quantizer error resulting in an effective SNR value. This effective SNR may be used to determine quantized performance from infinitely fine quantized results. Attention is given to sampling rate considerations. Sampling rate characteristics of the digital phase-locked loop (DPLL) structure are investigated for the infinitely fine quantized system. The predicted phase error variance equation is examined as a function of the sampling rate. Simulation results are presented and a method is described which enables the minimum required sampling rate to be determined from the predicted phase error variance equations.

Mapping, fine mapping, and molecular dissection of quantitative trait Loci in domestic animals.

PubMed

Georges, Michel

2007-01-01

Artificial selection has created myriad breeds of domestic animals, each characterized by unique phenotypes pertaining to behavior, morphology, physiology, and disease. Most domestic animal populations share features with isolated founder populations, making them well suited for positional cloning. Genome sequences are now available for most domestic species, and with them a panoply of tools including high-density single-nucleotide polymorphism panels. As a result, domestic animal populations are becoming invaluable resources for studying the molecular architecture of complex traits and of adaptation. Here we review recent progress and issues in the positional identification of genes underlying complex traits in domestic animals. As many phenotypes studied in animals are quantitative, we focus on mapping, fine mapping, and cloning of quantitative trait loci.

Optical transitions in highly charged californium ions with high sensitivity to variation of the fine-structure constant.

PubMed

Berengut, J C; Dzuba, V A; Flambaum, V V; Ong, A

2012-08-17

We study electronic transitions in highly charged Cf ions that are within the frequency range of optical lasers and have very high sensitivity to potential variations in the fine-structure constant, α. The transitions are in the optical range despite the large ionization energies because they lie on the level crossing of the 5f and 6p valence orbitals in the thallium isoelectronic sequence. Cf(16+) is a particularly rich ion, having several narrow lines with properties that minimize certain systematic effects. Cf(16+) has very large nuclear charge and large ionization energy, resulting in the largest α sensitivity seen in atomic systems. The lines include positive and negative shifters.

High resolution telescope and spectrograph observations of solar fine structure in the 1600 A region

NASA Technical Reports Server (NTRS)

Cook, J. W.; Brueckner, G. E.; Bartoe, J.-D. F.

1983-01-01

High spatial resolution spectroheliograms of the 1600 A region obtained during the HRTS rocket flight of 1978 February 13 are presented. The morphology, fine structure, and temporal behavior of emission bright points (BPs) in active and quiet regions are illustrated. In quiet regions, network elements persist as morphological units, although individual BPs may vary in intensity while usually lasting the flight duration. In cell centers, the BPs are highly variable on a 1 minute time scale. BPs in plages remain more constant in brightness over the observing sequence. BPs cover less than 4 percent of the quiet surface. The lifetime and degree of packing of BPs vary with the local strength of the magnetic field.

Mapping-by-sequencing of Ligon-lintless-1 (Li 1 ) reveals a cluster of neighboring genes with correlated expression in developing fibers of Upland cotton (Gossypium hirsutum L.).

PubMed

Thyssen, Gregory N; Fang, David D; Turley, Rickie B; Florane, Christopher; Li, Ping; Naoumkina, Marina

2015-09-01

Mapping-by-sequencing and SNP marker analysis were used to fine map the Ligon-lintless-1 ( Li 1 ) short fiber mutation in tetraploid cotton to a 255-kb region that contains 16 annotated proteins. The Ligon-lintless-1 (Li 1 ) mutant of cotton (Gossypium hirsutum L.) has been studied as a model for cotton fiber development since its identification in 1929; however, the causative mutation has not been identified yet. Here we report the fine genetic mapping of the mutation to a 255-kb region that contains only 16 annotated genes in the reference Gossypium raimondii genome. We took advantage of the incompletely dominant dwarf vegetative phenotype to identify 100 mutants (Li 1 /Li 1 ) and 100 wild-type (li 1 /li 1 ) homozygotes from a mapping population of 2567 F2 plants, which we bulked and deep sequenced. Since only homozygotes were sequenced, we were able to use a high stringency in SNP calling to rapidly narrow down the region harboring the Li 1 locus, and designed subgenome-specific SNP markers to test the population. We characterized the expression of all sixteen genes in the region by RNA sequencing of elongating fibers and by RT-qPCR at seven time points spanning fiber development. One of the most highly expressed genes found in this interval in wild-type fiber cells is 40-fold under-expressed at the day of anthesis (DOA) in the mutant fiber cells.  This gene is a major facilitator superfamily protein, part of the large family of proteins that includes auxin and sugar transporters. Interestingly, nearly all genes in this region were most highly expressed at DOA and showed a high degree of co-expression. Further characterization is required to determine if transport of hormones or carbohydrates is involved in both the dwarf and lintless phenotypes of Li 1 plants.

Fine-tuning structural RNA alignments in the twilight zone.

PubMed

Bremges, Andreas; Schirmer, Stefanie; Giegerich, Robert

2010-04-30

A widely used method to find conserved secondary structure in RNA is to first construct a multiple sequence alignment, and then fold the alignment, optimizing a score based on thermodynamics and covariance. This method works best around 75% sequence similarity. However, in a "twilight zone" below 55% similarity, the sequence alignment tends to obscure the covariance signal used in the second phase. Therefore, while the overall shape of the consensus structure may still be found, the degree of conservation cannot be estimated reliably. Based on a combination of available methods, we present a method named planACstar for improving structure conservation in structural alignments in the twilight zone. After constructing a consensus structure by alignment folding, planACstar abandons the original sequence alignment, refolds the sequences individually, but consistent with the consensus, aligns the structures, irrespective of sequence, by a pure structure alignment method, and derives an improved sequence alignment from the alignment of structures, to be re-submitted to alignment folding, etc.. This circle may be iterated as long as structural conservation improves, but normally, one step suffices. Employing the tools ClustalW, RNAalifold, and RNAforester, we find that for sequences with 30-55% sequence identity, structural conservation can be improved by 10% on average, with a large variation, measured in terms of RNAalifold's own criterion, the structure conservation index.

High-resolution definition of the Vibrio cholerae essential gene set with hidden Markov model–based analyses of transposon-insertion sequencing data

PubMed Central

Chao, Michael C.; Pritchard, Justin R.; Zhang, Yanjia J.; Rubin, Eric J.; Livny, Jonathan; Davis, Brigid M.; Waldor, Matthew K.

2013-01-01

The coupling of high-density transposon mutagenesis to high-throughput DNA sequencing (transposon-insertion sequencing) enables simultaneous and genome-wide assessment of the contributions of individual loci to bacterial growth and survival. We have refined analysis of transposon-insertion sequencing data by normalizing for the effect of DNA replication on sequencing output and using a hidden Markov model (HMM)-based filter to exploit heretofore unappreciated information inherent in all transposon-insertion sequencing data sets. The HMM can smooth variations in read abundance and thereby reduce the effects of read noise, as well as permit fine scale mapping that is independent of genomic annotation and enable classification of loci into several functional categories (e.g. essential, domain essential or ‘sick’). We generated a high-resolution map of genomic loci (encompassing both intra- and intergenic sequences) that are required or beneficial for in vitro growth of the cholera pathogen, Vibrio cholerae. This work uncovered new metabolic and physiologic requirements for V. cholerae survival, and by combining transposon-insertion sequencing and transcriptomic data sets, we also identified several novel noncoding RNA species that contribute to V. cholerae growth. Our findings suggest that HMM-based approaches will enhance extraction of biological meaning from transposon-insertion sequencing genomic data. PMID:23901011

Fungal glycoside hydrolases for saccharification of lignocellulose: outlook for new discoveries fueled by genomics and functional studies

DOE Office of Scientific and Technical Information (OSTI.GOV)

Jovanovic, Iva; Magnuson, Jon K.; Collart, Frank R.

2009-08-01

Genome sequencing of a variety of fungi is a major initiative currently supported by the Department of Energy’s Joint Genome Institute. Encoded within the genomes of many fungi are upwards of 200+ enzymes called glycoside hydrolases (GHs). GHs are known for their ability to hydrolyze the polysaccharide components of lignocellulosic biomass. Production of ethanol and “next generation” biofuels from lignocellulosic biomass represents a sustainable route to biofuels production. However this process has to become more economical before large scale operations are put into place. Identifying and characterizing GHs with improved properties for biomass degradation is a key factor for themore » development of cost effective processes to convert biomass to fuels and chemicals. With the recent explosion in the number of GH encoding genes discovered by fungal genome sequencing projects, it has become apparent that improvements in GH gene annotation processes have to be developed. This will enable more informed and efficient decision making with regard to selection and utilization of these important enzymes in bioprocess that produce fuels and chemicals from lignocellulosic feedstocks.« less

Use of micro-resistivity imaging tools in developing lower Pennsylvanian Morrow channel sandstone reservoirs, Cheyenne, Kiowa and Lincoln Counties, Colorado

DOE Office of Scientific and Technical Information (OSTI.GOV)

Germinario, M.P.

1996-01-01

In southeastern Colorado, Lower Pennsylvanian Morrow channel sandstones are part of complex valley-fill sequences incised into Morrow marine deposits. Morrow valleys are approximately [1/2] to 1 mile wide. Valley-fill consists of floodplain and channel filling shales, very fine-grained estuarine sandstones and fine- to coarse-grained channel sandstones that are up to 50' thick. Channel sandstones represent a sequence of stacked fluvial bars deposited in braided, anastomosing and meandering fluvial environments. Cross-stratification in channel sandstones can be imaged by micro-resistivity wireline logging tools and interpreted interactively on various workstation software packages. Recognition, interpretation and measurement of current, stoss face, and lateral accretionmore » beds in these sandstones can result in an estimated direction of paleocurrent flow of the channel. Determination of the channel's local paleoflow direction can provide significant sand risk reduction in developmental drilling, especially in 80 acre or less spacing patterns. As the distance between offset drilling locations increases, the reliability of paleoflow prediction decreases, and the corresponding sand risk rises. Lateral accretion bedding in Morrow channel sandstones has proven to be a poor indicator of sand thickening direction, due to the complex stacking of multiple channel sandstones within any given valley-fill sequence. Micro-resistivity imaging reduces risk in Morrow channel sandstone development drilling programs. Furthermore, these interpretation techniques could be applicable in other fluvial channel sandstone plays.« less

Use of micro-resistivity imaging tools in developing lower Pennsylvanian Morrow channel sandstone reservoirs, Cheyenne, Kiowa and Lincoln Counties, Colorado

DOE Office of Scientific and Technical Information (OSTI.GOV)

Germinario, M.P.

1996-12-31

In southeastern Colorado, Lower Pennsylvanian Morrow channel sandstones are part of complex valley-fill sequences incised into Morrow marine deposits. Morrow valleys are approximately {1/2} to 1 mile wide. Valley-fill consists of floodplain and channel filling shales, very fine-grained estuarine sandstones and fine- to coarse-grained channel sandstones that are up to 50` thick. Channel sandstones represent a sequence of stacked fluvial bars deposited in braided, anastomosing and meandering fluvial environments. Cross-stratification in channel sandstones can be imaged by micro-resistivity wireline logging tools and interpreted interactively on various workstation software packages. Recognition, interpretation and measurement of current, stoss face, and lateral accretionmore » beds in these sandstones can result in an estimated direction of paleocurrent flow of the channel. Determination of the channel`s local paleoflow direction can provide significant sand risk reduction in developmental drilling, especially in 80 acre or less spacing patterns. As the distance between offset drilling locations increases, the reliability of paleoflow prediction decreases, and the corresponding sand risk rises. Lateral accretion bedding in Morrow channel sandstones has proven to be a poor indicator of sand thickening direction, due to the complex stacking of multiple channel sandstones within any given valley-fill sequence. Micro-resistivity imaging reduces risk in Morrow channel sandstone development drilling programs. Furthermore, these interpretation techniques could be applicable in other fluvial channel sandstone plays.« less

Sedimentology and genetic stratigraphy of Dean and Spraberry Formations (Permian), Midland basin, Texas

DOE Office of Scientific and Technical Information (OSTI.GOV)

Handford, C.R.

1981-09-01

The Spraberry trend of west Texas, once known as the world's largest uneconomic oil field, will undoubtedly become an increasingly important objective for the development of enhanced oil recovery techniques in fine-grained, low-permeability, low-pressure reservoirs. As the trend expands, facies and stratigraphic data should be integrated into exploration strategies. The Spraberry and Dean Formations may be divided into three genetic sequences, each consisting of several hundred feet of interbedded shale and carbonate overlain by a roughly equal amount of sandstone and siltstone. These sequences record episodes of shelf-margin progradation, deep-water resedimentation of shelf-derived carbonate debris, followed by influxes of terrigenousmore » clastics into the basin by way of feeder channels or submarine canyons, and suspension settling of fine-grained sediment from the water column. Four lithofacies comprise the terrigenous clastics of the Spraberry and Dean Fomations: (1) cross-laminated, massive, and parallel-laminated sandstone, (2) laminated siltstone, (3) bioturbated siltstone, and (4) black, organic-rich shale. Carbonate lithofacies occur mostly in the form of thin-bedded turbidites, slump, and debris-flow deposits. Terrigenous clastic rocks display facies sequences, isopach patterns, and sedimentary structures suggestive of deposition from turbidity currents, and long-lived saline density underflow and interflow currents. Clastic isopach patterns reflect an overall southward thinning of clastics in the Midland basin. Channelized flow and suspension settling were responsible for the formation of elongate fan-shaped accumulations of clastic sediments.« less

DOE Office of Scientific and Technical Information (OSTI.GOV)

Montgomery, S.L.

Recent discovery of natural gas in sandstones of the Jackfork Group of southeastern Oklahoma has led to revised interpretations of hydrocarbon potential in the Ouachita thrust province of eastern Oklahoma. Jackfork reservoirs consist of fine to very fine grained, submarine-fan lobe sandstones with low matrix permeability and porosity. Production is dependent upon natural fractures, enhanced in most cases by artificial stimulation. Individual wells have produced at rates of 1.3-5.7 Mcf per day and possess estimated reserves in the range of 2.0-7.6 Gcf. Hyperbolic decline suggests gas contribution from the matrix, possibly due to the presence of microfractures. Drilling has concentratedmore » on two subsidiary thrust blocks in the hanging wall of the Ti Valley thrust, southern Latimer County. However, recent outcrop, petrographic, and sedimentological analyses have shown that traditional depositional models of the Jackfork are overly limited and that potential Jackfork reservoirs exist across a broad area to the south of the current play. Such analyses have revealed the existence of thick, medium-coarse-grained channel sequences at a number of localities in the Lynn Mountain syncline. Similar sequences may also exist well to the south, in the Boktukola syncline, where thick sand intervals have been identified. Petrographic study of samples from the Lynn Mountain syncline suggests that channel sequences may have significantly higher reservoir quality than is found in productive Jackfork sandstones to the north. Traditional assumptions postulating low regional hydrocarbon potential for the Jackfork therefore stand in need of revision.« less

Whole genome sequence revealed the fine transmission map of carbapenem-resistant Klebsiella pneumonia isolates within a nosocomial outbreak.

PubMed

Sui, Wenjun; Zhou, Haijian; Du, Pengcheng; Wang, Lijun; Qin, Tian; Wang, Mei; Ren, Hongyu; Huang, Yanfei; Hou, Jing; Chen, Chen; Lu, Xinxin

2018-01-01

Carbapenem-resistant Klebsiella pneumoniae (CRKP) is a major cause of nosocomial infections worldwide. The transmission route of CRKP isolates within an outbreak is rarely described. This study aimed to reveal the molecular characteristics and transmission route of CRKP isolates within an outbreak of nosocomial infection. Collecting case information, active screening and targeted environmental monitoring were carried out. The antibiotic susceptibility, drug-resistant genes, molecular subtype and whole genome sequence of CRKP strains were analyzed. Between October and December 2011, 26 CRKP isolates were collected from eight patients in a surgical intensive care unit and subsequent transfer wards of Beijing Tongren hospital, China. All 26 isolates harbored bla KPC-2 , bla SHV-1 , and bla CTX-M-15 genes, had the same or similar pulsed-field gel electrophoresis patterns, and belonged to the sequence type 11 (ST11) clone. By comprehensive consideration of genomic and epidemiological information, a putative transmission map was constructed, including identifying one case as an independent event distinct from the other seven cases, and revealing two transmissions starting from the same case. This study provided the first report confirming an outbreak caused by K. pneumoniae ST11 clone co-harboring the bla KPC-2 , bla CTX-M-15 , and bla SHV-1 genes, and suggested that comprehensive consideration of genomic and epidemiological data can yield a fine transmission map of an outbreak and facilitate the control of nosocomial transmission.

Genome Sequence of the Native Apiculate Wine Yeast Hanseniaspora vineae T02/19AF.

PubMed

Giorello, Facundo M; Berná, Luisa; Greif, Gonzalo; Camesasca, Laura; Salzman, Valentina; Medina, Karina; Robello, Carlos; Gaggero, Carina; Aguilar, Pablo S; Carrau, Francisco

2014-05-29

The use of novel yeast strains for winemaking improves quality and provides variety including subtle characteristic differences in fine wines. Here we report the first genome of a yeast strain native to Uruguay, Hanseniaspora vineae T02/19AF, which has been shown to positively contribute to aroma and wine quality. Copyright © 2014 Giorello et al.

Single nucleotide polymorphism (SNP) discovery in rainbow trout using restriction site associated DNA (RAD) sequencing of doubled haploids and assessment of polymorphism in a population survey

USDA-ARS?s Scientific Manuscript database

Background: Our goal is to produce a high-throughput SNP genotyping platform for genomic analyses in rainbow trout that will enable fine mapping of QTL, whole genome association studies, genomic selection for improved aquaculture production traits, and genetic analyses of wild populations that aid ...

Reliability of individual valuations of public and private goods: Choice consistency, response time, and preference refinement

Treesearch

Thomas C. Brown; David Kingsley; George L. Peterson; Nicholas E. Flores; Andrea Clarke; Andrej Birjulin

2008-01-01

We examined the reliability of a large set of paired comparison value judgments involving public goods, private goods, and sums of money. As respondents progressed through a random sequence of paired choices they were each given, their response time decreased and they became more consistent, apparently fine-tuning their responses, suggesting that respondents tend to...

Assessing genetic diversity in java fine-flavor cocoa (theobroma cacao l.) Germplasm by simple sequence repeat (ssr) markers

USDA-ARS?s Scientific Manuscript database

Indonesia is the 3rd largest cocoa producing countries in the world, with an annual cacao bean production of 572,000 tons. The currently cultivated cacao varieties in Indonesia were inter-hybrids of various clones introduced from the Americas since the 16th century. Among them, “Java cocoa” is a wel...

Iridium profile for 10 million years across the Cretaceous-Tertiary boundary at Gubbio (Italy)

NASA Technical Reports Server (NTRS)

Alvarez, Walter; Asaro, Frank; Montanari, Alessandro

1990-01-01

The iridium anomaly at the Cretaceous-Tertiary (KT) boundary was discovered in the pelagic limestone sequence at Gubbio on the basis of 12 samples analyzed by neutron activation analysis (NAA) and was interpreted as indicating impact of a large extraterrestrial object at exactly the time of the KT mass extinction. Continuing controversy over the shape of the Ir profile at the Gubbio KT boundary and its interpretation called for a more detailed follow-up study. Analysis of a 57-meter-thick, 10-million-year-old part of the Gubbio sequence using improved NAA techniques revealed that there is only one Ir anomaly at the KT boundary, but this anomaly shows an intricate fine structure, the origin of which cannot yet be entirely explained. The KT Ir anomaly peaks in a 1-centimeter-thick clay layer, where the average Ir concentration is 3000 parts per trillion (ppt); this peak is flanked by tails with Ir concentrations of 20 to 80 ppt that rise above a background of 12 to 13 ppt. The fine structure of the tails is probably due in part to lateral reworking, diffusion, burrowing, and perhaps Milankovitch cyclicity.

Fine-scale phylogenetic architecture of a complex bacterial community.

PubMed

Acinas, Silvia G; Klepac-Ceraj, Vanja; Hunt, Dana E; Pharino, Chanathip; Ceraj, Ivica; Distel, Daniel L; Polz, Martin F

2004-07-29

Although molecular data have revealed the vast scope of microbial diversity, two fundamental questions remain unanswered even for well-defined natural microbial communities: how many bacterial types co-exist, and are such types naturally organized into phylogenetically discrete units of potential ecological significance? It has been argued that without such information, the environmental function, population biology and biogeography of microorganisms cannot be rigorously explored. Here we address these questions by comprehensive sampling of two large 16S ribosomal RNA clone libraries from a coastal bacterioplankton community. We show that compensation for artefacts generated by common library construction techniques reveals fine-scale patterns of community composition. At least 516 ribotypes (unique rRNA sequences) were detected in the sample and, by statistical extrapolation, at least 1,633 co-existing ribotypes in the sampled population. More than 50% of the ribotypes fall into discrete clusters containing less than 1% sequence divergence. This pattern cannot be accounted for by interoperon variation, indicating a large predominance of closely related taxa in this community. We propose that such microdiverse clusters arise by selective sweeps and persist because competitive mechanisms are too weak to purge diversity from within them.

Perceiving goals and actions in individuals with autism spectrum disorders.

PubMed

Zalla, Tiziana; Labruyère, Nelly; Georgieff, Nicolas

2013-10-01

In the present study, we investigated the ability to parse familiar sequences of action into meaningful events in young individuals with autism spectrum disorders (ASDs), as compared to young individuals with typical development (TD) and young individuals with moderate mental retardation or learning disabilities (MLDs). While viewing two videotaped movies, participants were requested to detect the boundary transitions between component events at both fine and coarse levels of the action hierarchical structure. Overall, reduced accuracy for event detection was found in participants with ASDs, relative to participants with TD, at both levels of action segmentation. The performance was, however, equally diminished in participants with ASDs and MLDs under the course-grained segmentation suggesting that difficulties to detect fine-grained events in ASDs cannot be explained by a general intellectual dysfunction. Reduced accuracy for event detection was related to diminished event recall, memory for event sequence and Theory of Mind abilities. We hypothesized that difficulties with event detection result from a deficit disrupting the on-line processing of kinematic features and physical changes of dynamic human actions. An impairment at the earlier stages of the event encoding process might contribute to deficits in episodic memory and social functioning in individuals with ASDs.

Geology of the Anlauf and Drain Quadrangles, Douglas and Lane Counties, Oregon

USGS Publications Warehouse

Hoover, Linn

1963-01-01

The Anlauf and Drain quadrangles, Oregon, lie about 20 miles south of the city of Eugene, in Douglas and Lane Counties. They constitute an area of about 435 square miles that includes parts of both the Cascade Range and Coast Range physiographic provinces. A sequence of lower Tertiary sedimentary and volcanic rocks with a maximum thickness of about 20,000 feet is exposed in the area. The oldest part of this sequence is the Umpqua formation of early Eocene age consisting of a lower member of vesicular and amygdaloidal olivine basalt flows, a middle member of water-laid vitric and lapilli crystal tuff, and an upper member of interbedded fissile siltstone and basaltic sandstone which contains a 300-foot tongue of massive to thick-bedded basaltic sandstone near its top. These rocks are predominantly of marine origin, although the general absence of pillow structures which are common in basaltic lavas of equivalent age elsewhere in the Coast Ranges suggests that some of the flows were poured out subaerially. The overlying tuff member, however, contains Foraminifera and in places has a lime content slightly in excess of 10 percent. Mollusca and Foraminifera indicate that the Umpqua formation is of early Eocene age and is a correlative of the Capay formation of California. The Tyee formation of middle Eocene age overlies the Umpqua formation and consists of more than 5,000 feet of rhythmically deposited sandstone and siltstone in beds 2 to 30 feet thick. The basal part of each bed consists of medium- to coarse-grained sandstone that grades upward into fine-grained sand- stone and siltstone. The principal constituents of the sandstone are quartz, partly a1tered feldspar, mica, clay, and fragments of basalt, fine-grained argillaceous rocks, and mica schist. Other detrital minerals include epidote, garnet, blue-green hornblende, tourmaline, and zoisite. The depositional environment of the Tyee formation is poorly known, although the rhythmic-graded bedding suggests turbidity currents. About 500 feet of sandstone and siltstone assigned to the Spencer formation of late Eocene age unconformably overlies the Tyee formation. The Spencer formation, better exposed in the east-central part of the Coast Ranges, contains marine fossils but also has thin impure coal beds, indicative of strand-line accumulation. The sandstone in the Spencer formation is very similar to that in the Tyee formation, from which it was probably derived. The Fisher formation contains about 5,500 feet of nonmarine pyroclastic and volcanic rocks that are related to the volcanic rock sequences of the western Cascade Range. The formation is characterized by a wide variety of rock types, including conglomerate, tuffaceous sandstone and siltstone, vitric and crystal tuff, waterlaid and mudflow breccia, and andesitic lava flows. These rocks gen- erally occur in lenticular beds that have little stratigraphic significance. The rocks apparently accumulated on a plain slightly above sea level that was subjected alternately to fiooding by running water and to desiccation. Fossil leaves from the lowermost part of the Fisher formation are of late Eocene age; the upper part of the formation is of early, and possibly niiddle, Oligocene age. A few exposures of olivine basalt were mapped in the extreme northern part of the Anlauf quadrangle. The flows, more extensively exposed to the north, overlie the Fisher formation, and, therefore, are tentatively considered to be post-Oligocene in age. All these stratigraphic units, but principally the Fisher formation, are cut by dikes, sills, and stocklike bodies of 'porphyritic basalt, diabase, and norite. Contemporaneously with the emplacement of most of these rocks, in late Miocene (?) time, hydrothermal solutions locailly altered the sedimentary and extrusive igneous racks and deposited cinnabar and other sulfide minerals, carbonates, and silica. Three parallel nartheastward-trending

Talaromyces sayulitensis, Acidiella bohemica and Penicillium citrinum in Brazilian oil shale by-products.

PubMed

de Goes, Kelly C G P; da Silva, Josué J; Lovato, Gisele M; Iamanaka, Beatriz T; Massi, Fernanda P; Andrade, Diva S

2017-12-01

Fine shale particles and retorted shale are waste products generated during the oil shale retorting process. These by-products are small fragments of mined shale rock, are high in silicon and also contain organic matter, micronutrients, hydrocarbons and other elements. The aims of this study were to isolate and to evaluate fungal diversity present in fine shale particles and retorted shale samples collected at the Schist Industrialization Business Unit (Six)-Petrobras in São Mateus do Sul, State of Paraná, Brazil. Combining morphology and internal transcribed spacer (ITS) sequence, a total of seven fungal genera were identified, including Acidiella, Aspergillus, Cladosporium, Ochroconis, Penicillium, Talaromyces and Trichoderma. Acidiella was the most predominant genus found in the samples of fine shale particles, which are a highly acidic substrate (pH 2.4-3.6), while Talaromyces was the main genus in retorted shale (pH 5.20-6.20). Talaromyces sayulitensis was the species most frequently found in retorted shale, and Acidiella bohemica in fine shale particles. The presence of T. sayulitensis, T. diversus and T. stolli in oil shale is described herein for the first time. In conclusion, we have described for the first time a snapshot of the diversity of filamentous fungi colonizing solid oil shale by-products from the Irati Formation in Brazil.

Tsunami recurrence in the eastern Alaska-Aleutian arc: A Holocene stratigraphic record from Chirikof Island, Alaska

USGS Publications Warehouse

Nelson, Alan R.; Briggs, Richard; Dura, Tina; Engelhart, Simon E.; Gelfenbaum, Guy; Bradley, Lee-Ann; Forman, S.L.; Vane, Christopher H.; Kelley, K.A.

2015-01-01

Despite the role of the Alaska-Aleutian megathrust as the source of some of the largest earthquakes and tsunamis, the history of its pre–twentieth century tsunamis is largely unknown west of the rupture zone of the great (magnitude, M 9.2) 1964 earthquake. Stratigraphy in core transects at two boggy lowland sites on Chirikof Island’s southwest coast preserves tsunami deposits dating from the postglacial to the twentieth century. In a 500-m-long basin 13–15 m above sea level and 400 m from the sea, 4 of 10 sandy to silty beds in a 3–5-m-thick sequence of freshwater peat were probably deposited by tsunamis. The freshwater peat sequence beneath a gently sloping alluvial fan 2 km to the east, 5–15 m above sea level and 550 m from the sea, contains 20 sandy to silty beds deposited since 3.5 ka; at least 13 were probably deposited by tsunamis. Although most of the sandy beds have consistent thicknesses (over distances of 10–265 m), sharp lower contacts, good sorting, and/or upward fining typical of tsunami deposits, the beds contain abundant freshwater diatoms, very few brackish-water diatoms, and no marine diatoms. Apparently, tsunamis traveling inland over low dunes and boggy lowland entrained largely freshwater diatoms. Abundant fragmented diatoms, and lake species in some sandy beds not found in host peat, were probably transported by tsunamis to elevations of >10 m at the eastern site. Single-aliquot regeneration optically stimulated luminescence dating of the third youngest bed is consistent with its having been deposited by the tsunami recorded at Russian hunting outposts in 1788, and with the second youngest bed being deposited by a tsunami during an upper plate earthquake in 1880. We infer from stratigraphy, 14C-dated peat deposition rates, and unpublished analyses of the island’s history that the 1938 tsunami may locally have reached an elevation of >10 m. As this is the first record of Aleutian tsunamis extending throughout the Holocene, we cannot estimate source earthquake locations or magnitudes for most tsunami-deposited beds. We infer that no more than 3 of the 23 possible tsunamis beds at both sites were deposited following upper plate faulting or submarine landslides independent of megathrust earthquakes. If so, the Semidi segment of the Alaska-Aleutian megathrust near Chirikof Island probably sent high tsunamis southward every 180–270 yr for at least the past 3500 yr.                   

African-American women's Upward Economic Mobility and Small for Gestational Age Births: A Population-Based Study.

PubMed

Collins, James W; Mariani, Allison; Rankin, Kristin

2018-03-01

Background The relationship between African-American women's upward economic mobility and small for gestational age (weight for gestational < 10th percentile, SGA) rates is incompletely understood. Objective To ascertain the extent to which African-American women's upward economic mobility from early-life impoverishment is coupled with reduced SGA rates. Methods Stratified and multilevel logistic regression analyses were completed on the Illinois transgenerational dataset of African-American infants (1989-1991) and their Chicago-born mothers (1956-1976) with linked U.S. census income information. Results Impoverished-born (defined as lowest quartile of neighborhood income distribution) African-American women (n = 4891) who remained impoverished by the time of delivery had a SGA rate of 19.7%. Individuals who achieved low (n = 5827), modest (n = 2254), or high (n = 732) upward economic mobility by adulthood had lower SGA rates of 17.2, 14.8, and 13.7%, respectively; RR = 0.9 (0.8-0.9), 0.8 (0.7-0.8), and 0.7 (0.6-0.8), respectively. In adjusted (controlling for traditional individual-level risk factors) multilevel regression models, there was a decreasing linear trend in SGA rates with increasing levels of upward economic mobility; the adjusted RR of SGA birth for impoverished-born African-American women who experienced low, modest, of high (compared to no) upward mobility equaled 0.95 (0.91, 0.99), 0.90 (0.83, 0.98), and 0.86 (0.75, 0.98), respectively, p < 0.05. Conclusions African-American women's upward economic mobility from early-life residence in poor urban communities is associated with lower SGA rates independent of adulthood risk status.

Method and apparatus for high-efficiency direct contact condensation

DOEpatents

Bharathan, D.; Parent, Y.; Hassani, A.V.

1999-07-20

A direct contact condenser having a downward vapor flow chamber and an upward vapor flow chamber, wherein each of the vapor flow chambers includes a plurality of cooling liquid supplying pipes and a vapor-liquid contact medium disposed thereunder to facilitate contact and direct heat exchange between the vapor and cooling liquid. The contact medium includes a plurality of sheets arranged to form vertical interleaved channels or passageways for the vapor and cooling liquid streams. The upward vapor flow chamber also includes a second set of cooling liquid supplying pipes disposed beneath the vapor-liquid contact medium which operate intermittently in response to a pressure differential within the upward vapor flow chamber. The condenser further includes separate wells for collecting condensate and cooling liquid from each of the vapor flow chambers. In alternate embodiments, the condenser includes a cross-current flow chamber and an upward flow chamber, a plurality of upward flow chambers, or a single upward flow chamber. The method of use of the direct contact condenser of this invention includes passing a vapor stream sequentially through the downward and upward vapor flow chambers, where the vapor is condensed as a result of heat exchange with the cooling liquid in the contact medium. The concentration of noncondensable gases in the resulting condensate-liquid mixtures can be minimized by controlling the partial pressure of the vapor, which depends in part upon the geometry of the vapor-liquid contact medium. In another aspect of this invention, the physical and chemical performance of a direct contact condenser can be predicted based on the vapor and coolant compositions, the condensation conditions, and the geometric properties of the contact medium. 39 figs.

Method and apparatus for high-efficiency direct contact condensation

DOEpatents

Bharathan, Desikan; Parent, Yves; Hassani, A. Vahab

1999-01-01

A direct contact condenser having a downward vapor flow chamber and an upward vapor flow chamber, wherein each of the vapor flow chambers includes a plurality of cooling liquid supplying pipes and a vapor-liquid contact medium disposed thereunder to facilitate contact and direct heat exchange between the vapor and cooling liquid. The contact medium includes a plurality of sheets arranged to form vertical interleaved channels or passageways for the vapor and cooling liquid streams. The upward vapor flow chamber also includes a second set of cooling liquid supplying pipes disposed beneath the vapor-liquid contact medium which operate intermittently in response to a pressure differential within the upward vapor flow chamber. The condenser further includes separate wells for collecting condensate and cooling liquid from each of the vapor flow chambers. In alternate embodiments, the condenser includes a cross-current flow chamber and an upward flow chamber, a plurality of upward flow chambers, or a single upward flow chamber. The method of use of the direct contact condenser of this invention includes passing a vapor stream sequentially through the downward and upward vapor flow chambers, where the vapor is condensed as a result of heat exchange with the cooling liquid in the contact medium. The concentration of noncondensable gases in the resulting condensate-liquid mixtures can be minimized by controlling the partial pressure of the vapor, which depends in part upon the geometry of the vapor-liquid contact medium. In another aspect of this invention, the physical and chemical performance of a direct contact condenser can be predicted based on the vapor and coolant compositions, the condensation conditions. and the geometric properties of the contact medium.

Climate Warming and Seasonal Precipitation Change Interact to Limit Species Distribution Shifts across Western North America

PubMed Central

Harsch, Melanie A.; HilleRisLambers, Janneke

2016-01-01

Using an extensive network of occurrence records for 293 plant species collected over the past 40 years across a climatically diverse geographic section of western North America, we find that plant species distributions were just as likely to shift upwards (i.e., towards higher elevations) as downward (i.e., towards lower elevations)–despite consistent warming across the study area. Although there was no clear directional response to climate warming across the entire study area, there was significant region- to region- variation in responses (i.e. from as many as 73% to as few as 32% of species shifting upward). To understand the factors that might be controlling region-specific distributional shifts of plant species, we explored the relationship between the direction of change in distribution limits and the nature of recent climate change. We found that the direction that distribution limits shifted was explained by an interaction between the rate of change in local summer temperatures and seasonal precipitation. Specifically, species were more likely to shift upward at their upper elevational limit when minimum temperatures increased and snowfall was unchanging or declined at slower rates (<0.5 mm/year). This suggests that both low temperature and water availability limit upward shifts at upper elevation limits. By contrast, species were more likely to shift upwards at their lower elevation limit when maximum temperatures increased, but also shifted upwards under conditions of cooling temperatures when precipitation decreased. This suggests increased water stress may drive upward shifts at lower elevation limits. Our results suggest that species’ elevational distribution shifts are not predictable by climate warming alone but depend on the interaction between seasonal temperature and precipitation change. PMID:27447834

A comprehensive sediment dynamics study of a major mud belt system on the inner shelf along an energetic coast.

PubMed

Liu, James T; Hsu, Ray T; Yang, Rick J; Wang, Ya Ping; Wu, Hui; Du, Xiaoqin; Li, Anchun; Chien, Steven C; Lee, Jay; Yang, Shouye; Zhu, Jianrong; Su, Chih-Chieh; Chang, Yi; Huh, Chih-An

2018-03-09

Globally mud areas on continental shelves are conduits for the dispersal of fluvial-sourced sediment. We address fundamental issues in sediment dynamics focusing on how mud is retained on the seabed on shallow inner shelves and what are the sources of mud. Through a process-based comprehensive study that integrates dynamics, provenance, and sedimentology, here we show that the key mechanism to keep mud on the seabed is the water-column stratification that forms a dynamic barrier in the vertical that restricts the upward mixing of suspended sediment. We studied the 1000 km-long mud belt that extends from the mouth of the Changjiang (Yangtze) River along the coast of Zhejiang and Fujian Provinces of China and ends on the west coast of Taiwan. This mud belt system is dynamically attached to the fluvial sources, of which the Changjiang River is the primary source. Winter is the constructive phase when active deposition takes place of fine-grained sediment carried mainly by the Changjiang plume driven by Zhe-Min Coastal Currents southwestward along the coast.

Apparatus for the pulverization and burning of solid fuels

DOE Office of Scientific and Technical Information (OSTI.GOV)

Sayler, W.H.; White, J.C.

1988-06-07

This patent describes an apparatus for pulverizing coarsely-divided, solid fuel, such as coal, and for feeding the pulverized fuel to a burner. It comprises an upstanding housing having side, bottom and top walls; an upstanding shaft axially mounted for rotation within the housing; means for rotating the shaft; a slinger having an annular opening therethrough concentric with and closely encircling the shaft; fan means secured to the shaft immediately below the top wall of the housing; air-turbulating means comprising a pair of spiders; air-inlet means in the housing below the slinger so that air will flow upwardly through the annularmore » opening as well as peripherally of the slinger, entraining fine solid fuel particles during passage through the housing interior for further pulverization by size attrition between the spiders; outlet means provided through the side of the housing adjacent to the fan means; and outlet means being adapted for connection with the burner; and solid fuel input mans leading into the housing and positioned to feed coarsely-divided solid fuel onto the slinger.« less