Factors affecting food chain transfer of mercury in the vicinity of the Nyanza site, Sudbury River, Massachusetts

USGS Publications Warehouse

Haines, T.A.; May, T.W.; Finlayson, R.T.; Mierzykowski, S.E.

2003-01-01

The influence of the Nyanza Chemical Waste Dump Superfund Site on the Sudbury River, Massachusetts, was assessed by analysis of sediment, fish prey organisms, and predator fish from four locations in the river system. Whitehall Reservoir is an impoundment upstream of the site, and Reservoir #2 is an impoundment downstream of the site. Cedar Street is a flowing reach upstream of the site, and Sherman Bridge is a flowing reach downstream of the site. Collections of material for analysis were made three times, in May, July, and October. Sediment was analyzed for acid-volatile sulfide (AVS), simultaneously-extracted (SEM) metals (As, Cd, Cr, Hg, Pb, Sb, Zn), and total recoverable Hg. The dominant predatory fish species collected at all sites, largemouth bass (Micropterus salmoides), was analyzed for the same suite of metals as sediment. Analysis of stomach contents of bass identified small fish (yellow perch Perca flavescens, bluegill Lepomis macrochirus, and pumpkinseed Lepomis gibbosus), crayfish, and dragonfly larvae as the dominant prey organisms. Samples of the prey were collected from the same locations and at the same times as predator fish, and were analyzed for total and methyl mercury. Results of AVS and SEM analyses indicated that sediments were not toxic to aquatic invertebrates at any site. The SEM concentrations of As, Cd, and Cr were significantly higher at Reservoir #2 than at the reference sites, and SEM As and Cd were significantly higher at Sherman Bridge than at Cedar St. Sediment total Hg was elevated only at Reservoir #2. Hg was higher at site-influenced locations in all fish species except brown bullhead (Ameiurus nebulosus). Cd was higher in bluegill, black crappie (Pomoxis nigromaculatus), and brown bullhead, and Cr was higher in largemouth bass fillet samples but not in whole-body samples. There were no seasonal differences in sediment or prey organism metals, but some metals in some fish species did vary over time in an inconsistent manner. Predator fish Hg concentration was significantly linearly related to weighted prey organism methyl Hg concentration. Largemouth bass Hg was significantly lower at Reservoir #2 in our study than in previous investigations in 1989 and 1990. High concentrations of inorganic Hg remain in river sediment as a result of operation of the Nyanza site, and fish Hg concentrations in river reaches downstream of the site are elevated compared to upstream reference sites. However, the differences are relatively small and Hg concentrations in largemouth bass from the site-influenced locations are no higher than those from some other, nearby uncontaminated sites. We hypothesize that this results from burial of contaminated sediment with cleaner material, which reduces bioavailability of contaminants and possibly reduces methylation of mercury.

Trading-off fish biodiversity, food security, and hydropower in the Mekong River Basin.

PubMed

Ziv, Guy; Baran, Eric; Nam, So; Rodríguez-Iturbe, Ignacio; Levin, Simon A

2012-04-10

The Mekong River Basin, site of the biggest inland fishery in the world, is undergoing massive hydropower development. Planned dams will block critical fish migration routes between the river's downstream floodplains and upstream tributaries. Here we estimate fish biomass and biodiversity losses in numerous damming scenarios using a simple ecological model of fish migration. Our framework allows detailing trade-offs between dam locations, power production, and impacts on fish resources. We find that the completion of 78 dams on tributaries, which have not previously been subject to strategic analysis, would have catastrophic impacts on fish productivity and biodiversity. Our results argue for reassessment of several dams planned, and call for a new regional agreement on tributary development of the Mekong River Basin.

Pathway-based analysis of fish transcriptomics data along effluent gradients in Minnesota rivers

EPA Science Inventory

As part of a larger effort to assess the health of streams and rivers influenced by municipal effluents in Minnesota, fathead minnows (Pimephales promelas; FHM) were exposed to ambient surface waters from three locations. The locations were generally representative of the state: ...

Metazoan parasite communities of rock cod Eleginops maclovinus along southern Chilean coast and their use as biological tags at a local spatial scale.

PubMed

Henriquez, V P; Gonzalez, M T; Licandeo, R; Carvajal, J

2011-12-01

The composition of the metazoan parasite fauna of the rock cod Eleginops maclovinus from three locations in southern Chile was compared to assess the local spatial variation of the community component of their parasitic faunas. A total of 13 108 metazoan parasites (5267 endoparasites and 7841 ectoparasites) belonging to 34 taxa were collected from 268 specimens of E. maclovinus between October 2008 and March 2009. The populations and community quantitative descriptors were estimated. Altogether, 97.4% of the fish were infected with at least one parasite taxon. The most prevalent species were Hypoechinorhynchus magellanicus (Acanthocephala), Caligus rogercresseyi, Lepeophtheirus mugiloides, Clavella adunca (Copepoda) and Similascarophis sp. (Nematoda). Five species are new records for this host: Argulus araucanus, Hirudinea gen. sp1., Hirudinea gen. sp2., Benedenia sp. and Camallanidae gen. sp. A linear discriminant analysis (LDA) showed that the metazoan parasite fauna of E. maclovinus varied qualitatively and quantitatively among three locations, with 89.7% of fish being correctly assigned to their respective locations. This suggested that parasites could be a reliable tool to discriminate individual fish from geographically close locations. There was a weak relationship between the parasite fauna and fish size and there were no accumulations of parasites in the host over time, which could be associated with ontogenetic changes of diet associated with habitat use. © 2011 The Authors. Journal of Fish Biology © 2011 The Fisheries Society of the British Isles.

Macroecological analysis of the fish fauna inhabiting Cymodocea nodosa seagrass meadows.

PubMed

Espino, F; Brito, A; Haroun, R; Tuya, F

2015-10-01

In this study, patterns in the taxonomic richness and composition of the fish fauna inhabiting Cymodocea nodosa seagrass meadows were described across their entire distribution range in the Mediterranean Sea and adjacent Atlantic Ocean. Specifically, the study tested whether there are differences in the composition of fish assemblages between those ecoregions encompassed by the distribution range of C. nodosa, and whether these differences in composition are connected with differences in bioclimatic affinities of the fish faunas. A literature review resulted in a total of 19 studies, containing 22 fish assemblages at 18 locations. The ichthyofauna associated with C. nodosa seagrass meadows comprises 59 families and 188 species. The western Mediterranean (WM) Sea has the highest species richness (87 species). Fish assemblages from the Macaronesia-Canary Islands, the Sahelian Upwelling, South European Atlantic Shelf and the WM differ, in terms of assemblage composition, relative to other ecoregions. In contrast, the composition of the fish fauna from the central and eastern Mediterranean overlaps. There is a significant serial correlation in fish assemblage composition between adjacent ecoregions along the distribution range of C. nodosa. Dissimilarities in assemblage composition are connected with the geographical separation between locations, and the mean minimum annual seawater temperature is the environmental factor that explains most variation in fish assemblage composition. © 2015 The Fisheries Society of the British Isles.

A model to locate potential areas for lake sturgeon spawning habitat construction in the St. Clair–Detroit River System

USGS Publications Warehouse

Bennion, David; Manny, Bruce A.

2014-01-01

In response to a need for objective scientific information that could be used to help remediate loss of fish spawning habitat in the St. Clair River and Detroit River International Areas of Concern, this paper summarizes a large-scale geographic mapping investigation. Our study integrates data on two variables that many riverine fishes respond to in selecting where to spawn in these waters (water flow velocity and water depth) with available maps of the St. Clair–Detroit River System (SC–DRS). Our objectives were to locate and map these two physical components of fish habitat in the St. Clair and Detroit rivers and Lake St. Clair using a geographic information system (GIS) and to identify where, theoretically, fish spawning habitat could be remediated in these rivers. The target fish species to which this model applies is lake sturgeon (Acipenser fulvescens), but spawning reefs constructed for lake sturgeon in this system have been used for spawning by 17 species of fish. Our analysis revealed areas in each river that possessed suitable water velocity and depth for fish spawning and therefore could theoretically be remediated by the addition of rock-rubble substrate like that used at two previously remediated sites in the Detroit River at Belle Isle and Fighting Island. Results of our analysis revealed that only 3% of the total area of the SC–DRS possesses the necessary combination of water depth and high flow velocity to be indicated by the model as potential spawning habitat for lake sturgeon.

Evolution of trace amine associated receptor (TAAR) gene family in vertebrates: lineage-specific expansions and degradations of a second class of vertebrate chemosensory receptors expressed in the olfactory epithelium.

PubMed

Hashiguchi, Yasuyuki; Nishida, Mutsumi

2007-09-01

The trace amine-associated receptors (TAARs) form a specific family of G protein-coupled receptors in vertebrates. TAARs were initially considered neurotransmitter receptors, but recent study showed that mouse TAARs function as chemosensory receptors in the olfactory epithelium. To clarify the evolutionary dynamics of the TAAR gene family in vertebrates, near-complete repertoires of TAAR genes and pseudogenes were identified from the genomic assemblies of 4 teleost fishes (zebrafish, fugu, stickleback, and medaka), western clawed frogs, chickens, 3 mammals (humans, mice, and opossum), and sea lampreys. Database searches revealed that fishes had many putatively functional TAAR genes (13-109 genes), whereas relatively small numbers of TAAR genes (3-22 genes) were identified in tetrapods. Phylogenetic analysis of these genes indicated that the TAAR gene family was subdivided into 5 subfamilies that diverged before the divergence of ray-finned fishes and tetrapods. In tetrapods, virtually all TAAR genes were located in 1 specific region of their genomes as a gene cluster; however, in fishes, TAAR genes were scattered throughout more than 2 genomic locations. This possibly reflects a whole-genome duplication that occurred in the common ancestor of ray-finned fishes. Expression analysis of zebrafish and stickleback TAAR genes revealed that many TAARs in these fishes were expressed in the olfactory organ, suggesting the relatively high importance of TAARs as chemosensory receptors in fishes. A possible evolutionary history of the vertebrate TAAR gene family was inferred from the phylogenetic and comparative genomic analyses.

The Effect of Gender, Tone, and Sound Location on the Response Behavior of Neogobius melanostomus (Round Goby) and the Possibility of Future Trapping of this Invasive Species in Lake Superior.

PubMed

Moynan, Crystal R; Neumann, Christine E; Welsh, Cynthia A

2016-08-01

Neogobius melanostomus (round goby) are a benthic dwelling invasive species of fish in the Great Lakes. This study was done to determine if a tone that mimics the frequency (175 Hz) of mating call of a male round goby would have an effect on male and female response. A testing tank and a simulated trap in front of a speaker at each end were used. Each fish was then placed individually into the small holding box that was in the center of the tank. A video camera was then turned on to record fish movement once the door was opened. Next, the artificial sound was turned on for 1 min (175, 300, 500 Hz, and no sound); 175 Hz mimics the conspecific mating call. This process was done for each frequency for each fish. The individual fish was then allowed to roam for 5 min. The video camera recorded fish location and behavior. From the videos, a continuous measure was collected according to when the fish crossed the center line. The hypothesis, if (N. melanostomus) hears different frequencies of sound projected from a certain location in a fish tank habitat, then the females will be attracted and spend more time on the sound-emitting side of the tank, which mimics the frequency of mating call of a male round goby (175 Hz, 13 pulse), was supported; females spent more time on the sound-emitting side of the tank and males avoided the sound-emitting side of the tank, analysis of variance p < 0.012.

Elucidating the trophodynamics of four coral reef fishes of the Solomon Islands using δ15N and δ13C

NASA Astrophysics Data System (ADS)

Greenwood, N. D. W.; Sweeting, C. J.; Polunin, N. V. C.

2010-09-01

Size-related diet shifts are important characteristics of fish trophodynamics. Here, body size-related changes in muscle δ15N and δ13C of four coral reef fishes, Acanthurus nigrofuscus (herbivore), Chaetodon lunulatus (corallivore) , Chromis xanthura (planktivore) and Plectropomus leopardus (piscivore) were investigated at two locations in the Solomon Islands. All four species occupied distinct isotopic niches and the concurrent δ13C' values of C. xanthura and P. leopardus suggested a common planktonic production source. Size-related shifts in δ15N, and thus trophic level, were observed in C. xanthura, C. lunulatus and P. leopardus, and these trends varied between location, indicating spatial differences in trophic ecology. A literature review of tropical fishes revealed that positive δ15N-size trends are common while negative δ15N-size trends are rare. Size-δ15N trends fall into approximately equal groups representing size-based feeding within a food chain, and that associated with a basal resource shift and occurs in conjunction with changes in production source, indicated by δ13C. The review also revealed large scale differences in isotope-size trends and this, combined with small scale location differences noted earlier, highlights a high degree of plasticity in the reef fishes studied. This suggests that trophic size analysis of reef fishes would provide a productive avenue to identify species potentially vulnerable to reef impacts as a result of constrained trophic behaviour.

Morphological variation of siscowet lake trout in Lake Superior

USGS Publications Warehouse

Bronte, C.R.; Moore, S.A.

2007-01-01

Historically, Lake Superior has contained many morphologically distinct forms of the lake trout Salvelinus namaycush that have occupied specific depths and locations and spawned at specific times of the year. Today, as was probably the case historically, the siscowet morphotype is the most abundant. Recent interest in harvesting siscowets to extract oil containing omega-3 fatty acids will require additional knowledge of the biology and stock structure of these lightly exploited populations. The objective of this study was to determine whether shape differences exist among siscowet populations across Lake Superior and whether these shape differences can be used to infer stock structure. Morphometric analysis (truss protocol) was used to differentiate among siscowets sampled from 23 locations in Lake Superior. We analyzed 31 distance measurements among 14 anatomical landmarks taken from digital images of fish recorded in the field. Cluster analysis of size-corrected data separated fish into three geographic groups: The Isle Royale, eastern (Michigan), and western regions (Michigan). Finer scales of stock structure were also suggested. Discriminant function analysis demonstrated that head measurements contributed to most of the observed variation. Cross-validation classification rates indicated that 67–71% of individual fish were correctly classified to their region of capture. This is the first study to present shape differences associated with location within a lake trout morphotype in Lake Superior.

EPA Office of Water (OW): Fish Consumption Advisories and Fish Tissue Sampling Stations NHDPlus Indexed Datasets

EPA Pesticide Factsheets

The Fish Consumption Advisories dataset contains information on Fish Advisory events that have been indexed to the EPA Office of Water NHDPlus v2.1 hydrology and stored in the Reach Addressing Database (RAD). NHDPlus is a database that interconnects and uniquely identifies the millions of stream segments or reaches that comprise the Nations' surface water drainage system. NHDPlus provides a national framework for assigning reach addresses to water quality related entities, such as fish advisories locations. Reach addresses establish the locations of these entities relative to one another within the NHD surface water drainage network in a manner similar to street addresses. The assignment of reach addresses is accomplished through a process known as reach indexing. Fish consumption advisories and fish tissue sampling stations are reported to EPA by the states. Sampling stations are the locations where a state has collected fish tissue data for use in advisory determinations. Fish consumption advisory locations are coded onto NHDPlus flowline features to create point and linear events. Fish consumption advisory locations are also coded onto NHDPlus waterbody features to create area events. In addition to NHDPlus-reach indexed data, there may also be custom events (point, line, or area) that are not associated with NHDPlus. Although these Fish consumption advisories are not represented in NHDPlus, the data created for them are in an EPA standard format that is co

Trading-off fish biodiversity, food security, and hydropower in the Mekong River Basin

PubMed Central

Ziv, Guy; Baran, Eric; Nam, So; Rodríguez-Iturbe, Ignacio; Levin, Simon A.

2012-01-01

The Mekong River Basin, site of the biggest inland fishery in the world, is undergoing massive hydropower development. Planned dams will block critical fish migration routes between the river's downstream floodplains and upstream tributaries. Here we estimate fish biomass and biodiversity losses in numerous damming scenarios using a simple ecological model of fish migration. Our framework allows detailing trade-offs between dam locations, power production, and impacts on fish resources. We find that the completion of 78 dams on tributaries, which have not previously been subject to strategic analysis, would have catastrophic impacts on fish productivity and biodiversity. Our results argue for reassessment of several dams planned, and call for a new regional agreement on tributary development of the Mekong River Basin. PMID:22393001

Cytogenetic Analysis of Populus trichocarpa - Ribosomal DNA, Telomere Repeat Sequence, and Marker-selected BACs

Treesearch

M.N. lslam-Faridi; C.D. Nelson; S.P. DiFazio; L.E. Gunter; G.A. Tuskan

2009-01-01

The 185-285 rDNA and 55 rDNA loci in Populus trichocarpa were localized using fluorescent in situ hybridization (FISH). Two 185-285 rDNA sites and one 55 rDNA site were identified and located at the ends of 3 different chromosomes. FISH signals from the Arabidopsis-type telomere repeat sequence were observed at the distal ends of each chromosome. Six BAC clones...

A Comparison of Mathematical Models of Fish Mercury Concentration as a Function of Atmospheric Mercury Deposition Rate and Watershed Characteristics

NASA Astrophysics Data System (ADS)

Smith, R. A.; Moore, R. B.; Shanley, J. B.; Miller, E. K.; Kamman, N. C.; Nacci, D.

2009-12-01

Mercury (Hg) concentrations in fish and aquatic wildlife are complex functions of atmospheric Hg deposition rate, terrestrial and aquatic watershed characteristics that influence Hg methylation and export, and food chain characteristics determining Hg bioaccumulation. Because of the complexity and incomplete understanding of these processes, regional-scale models of fish tissue Hg concentration are necessarily empirical in nature, typically constructed through regression analysis of fish tissue Hg concentration data from many sampling locations on a set of potential explanatory variables. Unless the data sets are unusually long and show clear time trends, the empirical basis for model building must be based solely on spatial correlation. Predictive regional scale models are highly useful for improving understanding of the relevant biogeochemical processes, as well as for practical fish and wildlife management and human health protection. Mechanistically, the logical arrangement of explanatory variables is to multiply each of the individual Hg source terms (e.g. dry, wet, and gaseous deposition rates, and residual watershed Hg) for a given fish sampling location by source-specific terms pertaining to methylation, watershed transport, and biological uptake for that location (e.g. SO4 availability, hill slope, lake size). This mathematical form has the desirable property that predicted tissue concentration will approach zero as all individual source terms approach zero. One complication with this form, however, is that it is inconsistent with the standard linear multiple regression equation in which all terms (including those for sources and physical conditions) are additive. An important practical disadvantage of a model in which the Hg source terms are additive (rather than multiplicative) with their modifying factors is that predicted concentration is not zero when all sources are zero, making it unreliable for predicting the effects of large future reductions in Hg deposition. In this paper we compare the results of using several different linear and non-linear models in an analysis of watershed and fish Hg data for 450 New England lakes. The differences in model results pertain to both their utility in interpreting methylation and export processes as well as in fisheries management.

Geographical distributions of lake trout strains stocked in Lake Ontario

USGS Publications Warehouse

Elrod, Joseph H.; O'Gorman, Robert; Schneider, Clifford P.; Schaner, Ted

1996-01-01

Geographical distributions of lake trout (Salvelinus namaycush) stocked at seven locations in U.S. waters and at four locations in Canadian waters of Lake Ontario were determined from fish caught with gill nets in September in 17 areas of U.S. waters and at 10 fixed locations in Canadian waters in 1986-95. For fish of a given strain stocked at a given location, geographical distributions were not different for immature males and immature females or for mature males and mature females. The proportion of total catch at the three locations nearest the stocking location was higher for mature fish than for immature fish in all 24 available comparisons (sexes combined) and was greater for fish stocked as yearlings than for those stocked as fingerlings in all eight comparisons. Mature fish were relatively widely dispersed from stocking locations indicating that their tendency to return to stocking locations for spawning was weak, and there was no appreciable difference in this tendency among strains. Mature lake trout were uniformly distributed among sampling locations, and the strain composition at stocking locations generally reflected the stocking history 5 to 6 years earlier. Few lake trout moved across Lake Ontario between the north and south shores or between the eastern outlet basin and the main lake basin. Limited dispersal from stocking sites supports the concept of stocking different genetic strains in various parts of the lake with the attributes of each strain selected to match environmental conditions in the portion of the lake where it is stocked.

Risk factors for Clonorchis sinensis infection transmission in humans in northern Vietnam: A descriptive and social network analysis study.

PubMed

Vinh, Hoang Quang; Phimpraphai, Waraphon; Tangkawattana, Sirikachorn; Smith, John F; Kaewkes, Sasithorn; Dung, Do Trung; Duong, Tran Thanh; Sripa, Banchob

2017-04-01

Clonorchis sinensis is major fish-borne trematode, endemic in North Vietnam. Risk factors described so far include individual eating behaviors and environmental factors. Here, additional to conventional risk factors, we report on socially influenced liver fluke transmission in endemic communities. A cross-sectional study on risk factors and fish sharing networks was conducted in 4 villages of Gia Thinh Commune, Ninh Binh Province. A total of 510 residents in 272 households were recruited for risk factor analysis while 220 households, 28 fishermen and 10 fish-sellers were enrolled for social network study. Fecal examination for C. sinensis eggs was performed. Average C. sinensis infection rate at Gia Thinh commune was 16.5% (range 2% to 34.4%). Higher infection rates were significantly associated with males, lower educational levels, eating raw fish, and location of the villages. Social network analysis (SNA) showed a strong positive correlation between ego network size (number of households in fish sharing network) and quantity of raw fish consumed (r=0.603, P<0.05). The infection rate in people who ate raw-fish caught from a nearby river was significantly higher than those who consumed fish taken from farmed ponds (P<0.05). The amount of raw-fish meal consumed per resident/year was significantly higher in villages that had a strong network of sharing raw-fish food (P<0.001). This study reports for the first time on fish-food sharing among neighbors, proximity to water bodies, frequency of eating raw fish from natural water bodies and low education were key risk factors in C. sinensis infection transmission in northern Vietnam. Copyright © 2016 Elsevier Ireland Ltd. All rights reserved.

Risk factors for Clonorchis sinensis infection transmission in humans in northern Vietnam: A descriptive and social network analysis study

PubMed Central

Vinh, Hoang Quang; Phimpraphai, Waraphon; Tangkawattana, Sirikachorn; Smith, John F.; Kaewkes, Sasithorn; Dung, Do Trung; Duong, Tran Thanh; Sripa, Banchob

2016-01-01

Clonorchis sinensis is major fish-borne trematode, endemic in North Vietnam. Risk factors described so far include individual eating behaviors and environmental factors. Here, additional to conventional risk factors, we report on socially influenced liver fluke transmission in endemic communities. A cross-sectional study on risk factors and fish sharing networks was conducted in 4 villages of Gia Thinh Commune, Ninh Binh Province. A total of 510 residents in 272 households were recruited for risk factor analysis while 220 households, 28 fishermen and 10 fish-sellers were enrolled for social network study. Fecal examination for C. sinensis eggs was performed. Average C. sinensis infection rate at Gia Thinh commune was 16.5% (range 2% to 34.4%). Higher infection rates were significantly associated with males, lower educational levels, eating raw fish, and location of the villages. Social network analysis (SNA) showed a strong positive correlation between ego network size (number of households in fish sharing network) and quantity of raw fish consumed (r=0.603, P< 0.05). The infection rate in people who ate raw-fish caught from a nearby river was significantly higher than those who consumed fish taken from farmed ponds (P<0.05). The amount of raw-fish meal consumed per resident/year was significantly higher in villages that had a strong network of sharing raw-fish food (P<0.001). This study reports for the first time on fish-food sharing among neighbors, proximity to water bodies, frequency of eating raw fish from natural water bodies and low education were key risk factors in C. sinensis infection transmission in northern Vietnam. PMID:27939296

Effects of geomorphology, habitat, and spatial location on fish assemblages in a watershed in Ohio, USA.

PubMed

D'Ambrosio, Jessica L; Williams, Lance R; Witter, Jonathan D; Ward, Andy

2009-01-01

In this paper, we evaluate relationships between in-stream habitat, water chemistry, spatial distribution within a predominantly agricultural Midwestern watershed and geomorphic features and fish assemblage attributes and abundances. Our specific objectives were to: (1) identify and quantify key environmental variables at reach and system wide (watershed) scales; and (2) evaluate the relative influence of those environmental factors in structuring and explaining fish assemblage attributes at reach scales to help prioritize stream monitoring efforts and better incorporate all factors that influence aquatic biology in watershed management programs. The original combined data set consisted of 31 variables measured at 32 sites, which was reduced to 9 variables through correlation and linear regression analysis: stream order, percent wooded riparian zone, drainage area, in-stream cover quality, substrate quality, gradient, cross-sectional area, width of the flood prone area, and average substrate size. Canonical correspondence analysis (CCA) and variance partitioning were used to relate environmental variables to fish species abundance and assemblage attributes. Fish assemblages and abundances were explained best by stream size, gradient, substrate size and quality, and percent wooded riparian zone. Further data are needed to investigate why water chemistry variables had insignificant relationships with IBI scores. Results suggest that more quantifiable variables and consideration of spatial location of a stream reach within a watershed system should be standard data incorporated into stream monitoring programs to identify impairments that, while biologically limiting, are not fully captured or elucidated using current bioassessment methods.

Geographic Differences in Persistent Organic Pollutant Levels of Yellowfin Tuna.

PubMed

Nicklisch, Sascha C T; Bonito, Lindsay T; Sandin, Stuart; Hamdoun, Amro

2017-06-26

Fish are a source of persistent organic pollutants (POPs) in the human diet. Although species, trophic level, and means of production are typically considered in predicting fish pollutant load, and thus recommendations of consumption, capture location is usually not accounted for. Yellowfin tuna ( Thunnus albacares ) are harvested from across the world's oceans and are widely consumed. Here, we determined geographic variation in the overall mass, concentration, and composition of POPs in yellowfin and examined the differences in levels of several POP congeners of potential relevance to human health. We sampled dorsal muscle of 117 yellowfin tuna from 12 locations worldwide, and measured POP levels using combined liquid or gas chromatography and mass spectrometry according to U.S. Environmental Protection Agency standard procedures. POP levels varied significantly among sites, more than 36-fold on a mass basis. Individual fish levels ranged from 0.16 to 138.29 ng/g wet weight and lipid-normalized concentrations from 0.1 to 12.7 μM. Levels of 10 congeners that interfere with the cellular defense protein P-glycoprotein, termed transporter interfering compounds (TICs), ranged from 0.05 to 35.03 ng/g wet weight and from 0.03 to 3.32 μM in tuna lipid. Levels of TICs, and their individual congeners, were strongly associated with the overall POP load. Risk-based analysis of several carcinogenic POPs indicated that the fish with the highest levels of these potentially harmful compounds were clustered at specific geographic locations. Capture location is an important consideration when assessing the level and risk of human exposure to POPs through ingestion of wild fish. https://doi.org/10.1289/EHP518.

Geographic Differences in Persistent Organic Pollutant Levels of Yellowfin Tuna

PubMed Central

Nicklisch, Sascha C.T.; Bonito, Lindsay T.; Sandin, Stuart

2017-01-01

Background: Fish are a source of persistent organic pollutants (POPs) in the human diet. Although species, trophic level, and means of production are typically considered in predicting fish pollutant load, and thus recommendations of consumption, capture location is usually not accounted for. Objectives: Yellowfin tuna (Thunnus albacares) are harvested from across the world’s oceans and are widely consumed. Here, we determined geographic variation in the overall mass, concentration, and composition of POPs in yellowfin and examined the differences in levels of several POP congeners of potential relevance to human health. Methods: We sampled dorsal muscle of 117 yellowfin tuna from 12 locations worldwide, and measured POP levels using combined liquid or gas chromatography and mass spectrometry according to U.S. Environmental Protection Agency standard procedures. Results: POP levels varied significantly among sites, more than 36-fold on a mass basis. Individual fish levels ranged from 0.16 to 138.29ng/g wet weight and lipid-normalized concentrations from 0.1 to 12.7μM. Levels of 10 congeners that interfere with the cellular defense protein P-glycoprotein, termed transporter interfering compounds (TICs), ranged from 0.05 to 35.03ng/g wet weight and from 0.03 to 3.32μM in tuna lipid. Levels of TICs, and their individual congeners, were strongly associated with the overall POP load. Risk-based analysis of several carcinogenic POPs indicated that the fish with the highest levels of these potentially harmful compounds were clustered at specific geographic locations. Conclusions: Capture location is an important consideration when assessing the level and risk of human exposure to POPs through ingestion of wild fish. https://doi.org/10.1289/EHP518 PMID:28686554

Mapping Reef Fish and the Seascape: Using Acoustics and Spatial Modeling to Guide Coastal Management

PubMed Central

Costa, Bryan; Taylor, J. Christopher; Kracker, Laura; Battista, Tim; Pittman, Simon

2014-01-01

Reef fish distributions are patchy in time and space with some coral reef habitats supporting higher densities (i.e., aggregations) of fish than others. Identifying and quantifying fish aggregations (particularly during spawning events) are often top priorities for coastal managers. However, the rapid mapping of these aggregations using conventional survey methods (e.g., non-technical SCUBA diving and remotely operated cameras) are limited by depth, visibility and time. Acoustic sensors (i.e., splitbeam and multibeam echosounders) are not constrained by these same limitations, and were used to concurrently map and quantify the location, density and size of reef fish along with seafloor structure in two, separate locations in the U.S. Virgin Islands. Reef fish aggregations were documented along the shelf edge, an ecologically important ecotone in the region. Fish were grouped into three classes according to body size, and relationships with the benthic seascape were modeled in one area using Boosted Regression Trees. These models were validated in a second area to test their predictive performance in locations where fish have not been mapped. Models predicting the density of large fish (≥29 cm) performed well (i.e., AUC = 0.77). Water depth and standard deviation of depth were the most influential predictors at two spatial scales (100 and 300 m). Models of small (≤11 cm) and medium (12–28 cm) fish performed poorly (i.e., AUC = 0.49 to 0.68) due to the high prevalence (45–79%) of smaller fish in both locations, and the unequal prevalence of smaller fish in the training and validation areas. Integrating acoustic sensors with spatial modeling offers a new and reliable approach to rapidly identify fish aggregations and to predict the density large fish in un-surveyed locations. This integrative approach will help coastal managers to prioritize sites, and focus their limited resources on areas that may be of higher conservation value. PMID:24454886

Analysis of public perception about impaired odor in center fishery processing industry Tegalsari Tegal city

NASA Astrophysics Data System (ADS)

Wibowo, Tri Setyo; Purwanto, P.; Yulianto, Bambang

2017-03-01

The Coastal Fishing Port (CFP) Tegalsari is one of the largest center of the fishery industries in Central Java Indonesia. In addition to producing fish-based products such as fish fillets, salted fish and fish meal are distributed to most major cities in Indonesia, but also generate waste and wastewater which potentially disrupt the environment. The purpose of this study describe the perception of the public about the negative impact of the activities in center fishery processing industry. The research method uses qualitative research design with the population living around the center of the fishing industry, with samples taken by purposive sampling numbered 30 people and 3 location sample to know concentration of ammoniac and hydrogen Sulfide. Data research in 2016 was processed using statistical methods. The results of research showed very significant, 80% of respondents who said the fishing activities causing nuisance odor. The remaining 20% stated that the odor nuisance almost imperceptibly. The nuisance of odor are perceived by 53% of respondents for a full day. There are 70% of respondents living around the center of the fishing industry who lived more than seven years, and the remaining 30% of respondents who lived less than 7 years. Conclusion respondent who live more than seven years and said there was no odor nuisance around 57%, are more than 50% of the respondents. The odor of the most influential parameter on the fishing industry is an element of ammoniac (NH3) instead of Hydrogen Sulfide (H2S), because the value at these three locations for Hydrogen Sulfide measurement results show the same number that is equal to 0.001 g/m3. While ammoniac levels at most locations smelled according to perceptions of examiners showed the highest scores, while the zone that did not feel the smell indicates a low value, the test results showed a clear level of distinction. So the need to manage the environment at the center of the fishing industry with a approach of clean technology program.

Inhibition of erythrocytes δ-aminolevulinic acid dehydratase (ALAD) activity in fish from waters affected by lead smelters

USGS Publications Warehouse

Schmitt, Christopher J.; Caldwell, Colleen A.; Olsen, Bill; Serdar, Dave; Coffey, Mike

2002-01-01

We assessed the effects on fish of lead (Pb) released to streamsby smelters located in Trail, BC (Canada), E. Helena, MT, Herculaneum, MO, and Glover, MO. Fish were collected by electrofishing from sites located downstream of smelters and from reference sites. Blood from each fish was analyzed for δ-aminolevulinic acid dehydratase (ALAD) activity and hemoglobin (Hb), and samples of blood, liver, or carcass were analyzed for Pb, zinc (Zn), or both. Fish collected downstreamof all four smelters sites had elevated Pb concentrations, decreased ALAD activity, or both relative to their respectivereference sites. At E. Helena, fish from the downstream site also had lower Hb concentrations than fish from upstream. Differences among taxa were also apparent. Consistent with previous studies, ALAD activity in catostomids (Pisces: Catostomidae-northern hog sucker,Hypentelium nigricans;river carpsucker, Carpiodes carpio; largescale sucker, Catostomus macrocheilus; and mountain sucker, C. platyrhynchus) seemed more sensitive to Pb-induced ALADinhibition than the salmonids (Pisces: Salmonidae-rainbow trout,Oncorhynchus mykiss; brook trout,Salvelinus fontinalis) or common carp (Cyprinus carpio). Some of these differences may have resulted from differential accumulation of Zn, which was not measured at all sites. We detected noALAD activity in channel catfish (Ictaluruspunctatus) from either site on the Mississippi River at Herculaneum, MO. Our findings confirmed that Pb is releasedto aquatic ecosystems by smelters and accumulated by fish, andwe documented potentially adverse effects of Pb in fish. We recommend that Zn be measured along with Pb when ALAD activityis used as a biomarker and the collection of at least 10 fish ofa species at each site to facilitate statistical analysis.

Species composition and assemblages of ichthyoplankton during summer in the East China Sea

NASA Astrophysics Data System (ADS)

Lin, Han-Yang; Chiu, Mei-Yun; Shih, Yu-Ming; Chen, I.-Shiung; Lee, Ming-An; Shao, Kwang-Tsao

2016-09-01

The East China Sea (ECS) is one of the most important fish spawning and nursery grounds in the north Pacific. Even though summer is an important spawning season for many fishes in the region, large-scale molecular identification studies on ichthyoplankton during this season are few. In this study, we sampled 8,933 fish eggs and 12,161 fish larvae from 25 stations during the summer of 2009. Using DNA barcoding, a number of the fish eggs and larvae were identified and classified into 45 and 124 taxa, respectively. Principal component analysis (PCA) categorized the inshore stations of the Changjiang Diluted Water area as having the hydrographic features of low sea surface temperature (SST), salinity (SSS) and high chlorophyll a (SSC) contents, whereas the continental shelf and offshore stations under the influence of the Kuroshio Current displayed the opposite results. Ichthyoplankton was more abundant at the inshore stations than the offshore stations, but species diversity was lower at the former locations. Species compositions of both fish eggs and fish larvae at the 25 stations were categorized into three different assemblages based on a non-metric multidimensional scaling analysis. Combining the assemblage patterns of ichthyoplankton with the results of the PCA and satellite images of SST and SSC showed that the assemblage patterns of fish eggs were correlated with water mass, while those of the fish larvae were not.

Organochlorine contaminants in fishes from coastal waters west of Amukta Pass, Aleutian Islands, Alaska, USA

USGS Publications Warehouse

Miles, A. Keith; Ricca, Mark A.; Anthony, Robert G.; Estes, James A.

2009-01-01

Organochlorines were examined in liver and stable isotopes in muscle of fishes from the western Aleutian Islands, Alaska, in relation to islands or locations affected by military occupation. Pacific cod (Gadus macrocephalus), Pacific halibut (Hippoglossus stenolepis), and rock greenling (Hexagrammos lagocephalus) were collected from nearshore waters at contemporary (decommissioned) and historical (World War II) military locations, as well as at reference locations. Total (Σ) polychlorinated biphenyls (PCBs) dominated the suite of organochlorine groups (ΣDDTs, Σchlordane cyclodienes, Σother cyclodienes, and Σchlorinated benzenes and cyclohexanes) detected in fishes at all locations, followed by ΣDDTs and Σchlordanes; dichlorodiphenyldi-chloroethylene (p,p′DDE) composed 52 to 66% of ΣDDTs by species. Organochlorine concentrations were higher or similar in cod compared to halibut and lowest in greenling; they were among the highest for fishes in Arctic or near Arctic waters. Organochlorine group concentrations varied among species and locations, but ΣPCB concentrations in all species were consistently higher at military locations than at reference locations. Moreover, all organochlorine group concentrations were higher in halibut from military locations than those from reference locations. A wide range of molecular weight organochlorines was detected at all locations, which implied regional or long-range transport and deposition, as well as local point-source contamination. Furthermore, a preponderance of higher-chlorinated PCB congeners in fishes from contemporary military islands implied recent exposure. Concentrations in all organochlorine groups increased with δ15N enrichment in fishes, and analyses of residual variation provided further evidence of different sources of ΣPCBs and p,p′DDE among species and locations.

Locational differences in mercury and selenium levels in 19 species of saltwater fish from New Jersey.

PubMed

Burger, Joanna; Jeitner, Christian; Gochfeld, Michael

2011-01-01

Individuals who fish, and their families that ingest self-caught fish, make decisions about where to fish, what type of fish to eat, and the quantity of fish to eat. While federal and state agencies often issue consumption advisories for some fish with high mercury (Hg) concentrations, advisories seldom provide the actual metal levels to the general public. There are few data for most saltwater fish, and even less information on variations in Hg levels in fish within a state or geographical region. The objective of this study was to provide Hg concentrations from 19 species of fish caught in different locations in New Jersey to (1) test the hypothesis that mean metal levels vary geographically, (2) provide this information to individuals who fish these coastal waters, and (3) provide a range of values for risk assessors who deal with saltwater fish exposure in the Northeastern United States. Selenium (Se) was also examined because of its purported moderating effect on the toxicity of Hg. Hg levels showed significant geographical variation for 10 of 14 species that were caught in more than one region of New Jersey, but there were significant locational differences for Se in only 5 of the fish. Mercury levels were significantly lower in fish collected from northern New Jersey (except for ling, Molva molva), compared to other regions. As might be expected, locational differences in Hg levels were greatest for fish species with the highest Hg concentrations (shark, Isurus oxyrinchus; tuna, Thunnus thynnus and T. albacares; striped bass, Morone saxatilis; bluefish, Pomatomus saltatrix). Fishers and their families might reduce their risk from Hg exposure not only by selecting fish generally lower in Hg, but by fishing predominantly in some regions over others, further lowering the potential risk. Health professionals might use these data to advise patients on which fish are safest to consume (in terms of Hg exposure) from particular geographical regions.

LOCATIONAL DIFFERENCES IN MERCURY AND SELENIUM LEVELS IN 19 SPECIES OF SALTWATER FISH FROM NEW JERSEY

PubMed Central

Burger, Joanna; Jeitner, Christian; Gochfeld, Michael

2014-01-01

Individuals who fish, and their families that ingest self-caught fish, make decisions about where to fish, what type of fish to eat, and the quantity of fish to eat. While federal and state agencies often issue consumption advisories for some fish with high mercury (Hg) concentrations, advisories seldom provide the actual metal levels to the general public. There are few data for most saltwater fish, and even less information on variations in Hg levels in fish within a state or geographical region. The objective of this study was to provide Hg concentrations from 19 species of fish caught in different locations in New Jersey to (1) test the hypothesis that mean metal levels vary geographically, (2) provide this information to individuals who fish these coastal waters, and (3) provide a range of values for risk assessors who deal with saltwater fish exposure in the Northeastern United States. Selenium (Se) was also examined because of its purported moderating effect on the toxicity of Hg. Hg levels showed significant geographical variation for 10 of 14 species that were caught in more than one region of New Jersey, but there were significant locational differences for Se in only 5 of the fish. Mercury levels were significantly lower in fish collected from northern New Jersey (except for ling, Molva molva), compared to other regions. As might be expected, locational differences in Hg levels were greatest for fish species with the highest Hg concentrations (shark, Isurus oxyrinchus; tuna, Thunnus thynnus and T. albacares; striped bass, Morone saxatilis; bluefish, Pomatomus saltatrix). Fishers and their families might reduce their risk from Hg exposure not only by selecting fish generally lower in Hg, but by fishing predominantly in some regions over others, further lowering the potential risk. Health professionals might use these data to advise patients on which fish are safest to consume (in terms of Hg exposure) from particular geographical regions. PMID:21598171

Timing and locations of reef fish spawning off the southeastern United States

PubMed Central

Heyman, William D.; Karnauskas, Mandy; Kobara, Shinichi; Smart, Tracey I.; Ballenger, Joseph C.; Reichert, Marcel J. M.; Wyanski, David M.; Tishler, Michelle S.; Lindeman, Kenyon C.; Lowerre-Barbieri, Susan K.; Switzer, Theodore S.; Solomon, Justin J.; McCain, Kyle; Marhefka, Mark; Sedberry, George R.

2017-01-01

Managed reef fish in the Atlantic Ocean of the southeastern United States (SEUS) support a multi-billion dollar industry. There is a broad interest in locating and protecting spawning fish from harvest, to enhance productivity and reduce the potential for overfishing. We assessed spatiotemporal cues for spawning for six species from four reef fish families, using data on individual spawning condition collected by over three decades of regional fishery-independent reef fish surveys, combined with a series of predictors derived from bathymetric features. We quantified the size of spawning areas used by reef fish across many years and identified several multispecies spawning locations. We quantitatively identified cues for peak spawning and generated predictive maps for Gray Triggerfish (Balistes capriscus), White Grunt (Haemulon plumierii), Red Snapper (Lutjanus campechanus), Vermilion Snapper (Rhomboplites aurorubens), Black Sea Bass (Centropristis striata), and Scamp (Mycteroperca phenax). For example, Red Snapper peak spawning was predicted in 24.7–29.0°C water prior to the new moon at locations with high curvature in the 24–30 m depth range off northeast Florida during June and July. External validation using scientific and fishery-dependent data collections strongly supported the predictive utility of our models. We identified locations where reconfiguration or expansion of existing marine protected areas would protect spawning reef fish. We recommend increased sampling off southern Florida (south of 27° N), during winter months, and in high-relief, high current habitats to improve our understanding of timing and location of reef fish spawning off the southeastern United States. PMID:28264006

Biological Entanglement-Like Effect After Communication of Fish Prior to X-Ray Exposure.

PubMed

Mothersill, Carmel; Smith, Richard; Wang, Jiaxi; Rusin, Andrej; Fernandez-Palomo, Cris; Fazzari, Jennifer; Seymour, Colin

2018-01-01

The phenomenon by which irradiated organisms including cells in vitro communicate with unirradiated neighbors is well established in biology as the radiation-induced bystander effect (RIBE). Generally, the purpose of this communication is thought to be protective and adaptive, reflecting a highly conserved evolutionary mechanism enabling rapid adjustment to stressors in the environment. Stressors known to induce the effect were recently shown to include chemicals and even pathological agents. The mechanism is unknown but our group has evidence that physical signals such as biophotons acting on cellular photoreceptors may be implicated. This raises the question of whether quantum biological processes may occur as have been demonstrated in plant photosynthesis. To test this hypothesis, we decided to see whether any form of entanglement was operational in the system. Fish from 2 completely separate locations were allowed to meet for 2 hours either before or after which fish from 1 location only (group A fish) were irradiated. The results confirm RIBE signal production in both skin and gill of fish, meeting both before and after irradiation of group A fish. The proteomic analysis revealed that direct irradiation resulted in pro-tumorigenic proteomic responses in rainbow trout. However, communication from these irradiated fish, both before and after they had been exposed to a 0.5 Gy X-ray dose, resulted in largely beneficial proteomic responses in completely nonirradiated trout. The results suggest that some form of anticipation of a stressor may occur leading to a preconditioning effect or temporally displaced awareness after the fish become entangled.

Analysis of heavy metals (Pb and Zn) concentration in sediment of Blanakan fish ponds, Subang, West Java

NASA Astrophysics Data System (ADS)

Wiriawan, A.; Takarina, N. D.; Pin, T. G.

2017-07-01

Blanakan fish ponds receive water resource from Kali Malang and Blanakan rivers. Industrial and domestic activities along the river can cause pollution, especially heavy metals. Zinc (Zn) is an essential element that needed by an organism, while Lead (Pb) is a nonessential element that is not needed. Discharge of waste water from industries and anthropogenic activities continuously not only pollute the water but also the sediment and biota live on it. This research was aimed to know the heavy metals content in the sediment of Blanakan fish ponds. Sediment samples were taken on July and August 2016 at three locations. Heavy metals were analyzed using Atomic Absorption Spectrophotometry (AAS) Shimadzu 6300. The result of Lead (Pb) measurement showed that Fish Pond 1 had higher average concentration compared Fish Pond 2 and Fish Pond 3 which was 0.55 ppm. Standard for Lead (Pb) in sediment according to Ontario Sediment Standards (2008) is 31 ppm. Based on Zinc (Zn) measurement, it was known that average of Zinc (Zn) concentration also higher on Fish Pond 1 compared to Fish Pond 2 and 3 which was 1.93 ppm. According to Ontario Sediment Standards (2008), a standard for Zinc (Zn) in sediment is 120 ppm. This indicated that heavy metals in the sediment of fish ponds were below standards. Statistical analysis using t-test showed that there was no significant difference of heavy metals content among fish ponds.

Impact of climate change on the relict tropical fish fauna of central sahara: threat for the survival of adrar mountains fishes, mauritania.

PubMed

Trape, Sébastien

2009-01-01

Four central Sahara mountainous massifs provide habitats for relict populations of fish. In the Adrar of Mauritania all available data on the presence and distribution of fish come from pre-1960 surveys where five fish species were reported: Barbus pobeguini, Barbus macrops, Barbus mirei, Sarotherodon galilaeus, and Clarias anguillaris. Since 1970, drought has had a severe impact in the Adrar where rainfall decreased by 35%. To investigate whether the relict populations of fish have survived the continuing drought, a study was carried out from 2004 to 2008. An inventory of perennial bodies of water was drawn up using a literature review and analysis of topographical and hydrological maps. Field surveys were carried out in order to locate the bodies of water described in the literature, identify the presence of fish, determine which species were present and estimate their abundance. The thirteen sites where the presence of fish was observed in the 1950s -Ksar Torchane, Ilij, Molomhar, Agueni, Tachot, Hamdoun, Terjit, Toungad, El Berbera, Timagazine, Dâyet el Mbârek, Dâyet et-Tefla, Nkedeï- were located and surveyed. The Ksar Torchane spring -type locality and the only known locality of B. mirei- has dried up at the height of the drought in 1984, and any fish populations have since become extinct there. The Timagazine, Dâyet el Mbârek and Dâyet et-Tefla pools have become ephemeral. The Hamdoun guelta appears to be highly endangered. The fish populations at the other sites remain unchanged. Four perennial pools which are home to populations of B. pobeguini are newly recorded. The tropical relict fish populations of the Adrar mountains of Mauritania appear to be highly endangered. Of thirteen previously recorded populations, four have become extinct since the beginning of the drought period. New fish population extinctions may occur should low levels of annual rainfall be repeated.

A karyotype comparison between two species of bordered plant bugs (Hemiptera, Heteroptera, Largidae) by conventional chromosome staining, C-banding and rDNA-FISH.

PubMed

Salanitro, Lucila Belén; Massaccesi, Anabella Cecilia; Urbisaglia, Santiago; Bressa, María José; Chirino, Mónica Gabriela

2017-01-01

A cytogenetic characterization, including heterochromatin content, and the analysis of the location of rDNA genes, was performed in Largus fasciatus Blanchard, 1843 and L. rufipennis Laporte, 1832. Mitotic and meiotic analyses revealed the same diploid chromosome number 2n = 12 + X0/XX (male/female). Heterochromatin content, very scarce in both species, revealed C-blocks at both ends of autosomes and X chromosome. The most remarkable cytological feature observed between both species was the different chromosome position of the NORs. This analysis allowed us to use the NORs as a cytological marker because two clusters of rDNA genes are located at one end of one pair of autosomes in L. fasciatus , whereas a single rDNA cluster is located at one terminal region of the X chromosome in L. rufipennis . Taking into account our results and previous data obtained in other heteropteran species, the conventional staining, chromosome bandings, and rDNA-FISH provide important chromosome markers for cytotaxonomy, karyotype evolution, and chromosome structure and organization studies.

Role of origin and release location in pre-spawning distribution and movements of anadromous alewife

USGS Publications Warehouse

Frank, Holly J.; Mather, M. E.; Smith, Joseph M.; Muth, Robert M.; Finn, John T.

2011-01-01

Capturing adult anadromous fish that are ready to spawn from a self sustaining population and transferring them into a depleted system is a common fisheries enhancement tool. The behaviour of these transplanted fish, however, has not been fully evaluated. The movements of stocked and native anadromous alewife, Alosa pseudoharengus (Wilson), were monitored in the Ipswich River, Massachusetts, USA, to provide a scientific basis for this management tool. Radiotelemetry was used to examine the effect of origin (native or stocked) and release location (upstream or downstream) on distribution and movement during the spawning migration. Native fish remained in the river longer than stocked fish regardless of release location. Release location and origin influenced where fish spent time and how they moved. The spatial mosaic of available habitats and the entire trajectory of freshwater movements should be considered to restore effectively spawners that traverse tens of kilometres within coastal rivers.

Validation of potential fishing zone forecast using experimental fishing method in Tolo Bay, Central Sulawesi Province

NASA Astrophysics Data System (ADS)

Rintaka, W. E.; Susilo, E.

2018-04-01

The national scale of Indonesian Potential Fishing Zone (PFZ) forecast system has been established since 2000. Recent times this system use Single Image Edge Detection algorithm to automatically identify thermal front from remote sensing images. Its generate two fishing ground/FG criteria: FG (high probability) and potential fishing ground/PFG (medium/low probability). To quantify the accuracy of this algorithm, an experimental fishing/EF was carried out in Tolo Bay, Central Sulawesi Province at September 2016 the late southeast monsoon period by using a pole and line fishing vessel. Four fishing activities (P1, P2, P3, and P4) were conducted during this study at a different location nearby the PFZ forecast position, two of them had good results. Based on distance measurement, these locations P1 and P4 were associated with PFZ forecast position. They were associated with PFG and FG criteria. The distance between EF to P1 and P4 were 9.7 and 6.69 nautical miles. The amount of catch for each location was 850 and 900 kg, respectively. The other locations P2 and P3 were also associated with PFG criteria, but there was no catch. We conclude that the number of the catch is influenced by the distance from PFZ forecast position and criteria.

Dispersal and dam passage of sonic-tagged juvenile lake sturgeon in the upper Tennessee River

USGS Publications Warehouse

Collier, William R.; Bettoli, Phillip William; Scholten, George D.

2011-01-01

More than 90,000 state-endangered lake sturgeon (Acipenser fulvescens) have been stocked into the French Broad River, Holston River, and Fort Loudoun Lake in the upper Tennessee River system. Although incidental reports of anglers catching these fish have increased, little is known about their fate after stocking. Therefore, this study was conducted to evaluate lake sturgeon dispersal throughout the system. Seven submersible ultrasonic receivers were deployed in the upper Tennessee River system and 37 juvenile fish (mean fork length = 660 mm) were surgically implanted with ultrasonic transmitters in the fall of 2007. These fish were stocked at two sites in the headwaters of Fort Loudoun Lake. The receivers logged 1,345 detections of tagged fish and manual tracking located 32 of the 37 tagged lake sturgeon over 21 months. Ten (31%) tagged fish passed through Fort Loudoun Dam and were located downstream in the headwaters of Watts Bar Reservoir; the other tagged fish were still at large above Fort Loudoun Dam when tracking ceased in 2009. Of all fish stocked, three (9%) were last located in the French Broad River and none were located in the Holston River.

A Markov chain analysis of the movements of juvenile salmonids, including sockeye salmon, in the forebay of McNary Dam, Washington and Oregon, 2006-09

USGS Publications Warehouse

Adams, Noah S.; Hatton, Tyson W.

2012-01-01

Passage and survival data were collected at McNary Dam between 2006 and 2009. These data have provided critical information for resource managers to implement structural and operational changes designed to improve the survival of juvenile salmonids as they migrate past the dam. Much of the valuable information collected at McNary Dam was in the form of three-dimensional (hereafter referred to as 3-D) tracks of fish movements in the forebay. These data depicted the behavior of multiple species (in three dimensions) during different diel periods, spill conditions, powerhouse operations, and testing of the surface bypass structures (temporary spillway weirs; TSWs). One of the challenges in reporting 3-D results is presenting the information in a manner that allows interested parties to summarize the behavior of many fish over many different conditions across multiple years. To accomplish this, we used a Markov chain analysis to characterize fish movement patterns in the forebay of McNary Dam. The Markov chain analysis allowed us to numerically summarize the behavior of fish in the forebay. This report is the second report published in 2012 that uses this analytical method. The first report included only fish released as part of the annual studies conducted at McNary Dam. This second report includes sockeye salmon that were released as part of studies conducted by the Chelan and Grant County Public Utility Districts at mid-Columbia River dams. The studies conducted in the mid-Columbia used the same transmitters as were used for McNary Dam studies, but transmitter pulse width was different between studies. Additionally, no passive integrated transponder tags were implanted in sockeye salmon. Differences in transmitter pulse width resulted in lower detection probabilities for sockeye salmon at McNary Dam. The absence of passive integrated transponder tags prevented us from determining if fish passed the powerhouse through the juvenile bypass system (JBS) or turbines. To facilitate comparison among species in this report, we combined JBS and turbine passage for yearling Chinook salmon, steelhead, and subyearling Chinook salmon even though we were able to differentiate between passage through the JBS or turbines for these three species. Information on passage proportions through the JBS and turbines can be found in the first report. Numerically summarizing the behavior of juvenile salmonids in the forebay of McNary Dam using the Markov chain analysis allowed us to confirm what had been previously summarized using visualization software. For example, within the powerhouse region, passage proportions among the three powerhouse areas were often greater in the southern and middle areas of the powerhouse compared to the northern area of the powerhouse for yearling and subyearling Chinook salmon. The opposite generally was observed for steelhead. The results of this analysis also allowed us to confirm and quantify the extent of milling behavior that was observed for steelhead. For fish that were first detected in the powerhouse region, less than 0.10 of the steelhead, on average, passed within each of the powerhouse areas. Instead, steelhead transitioned to adjoining areas in the spillway before passing the dam. In comparison, greater than 0.20 of the Chinook salmon passed within each of the powerhouse areas. Less milling behavior was observed for all species for fish that first approached the spillway. Compared to the powerhouse areas, a higher proportion of fish, regardless of species, passed the spillway areas and fewer transitioned to adjoining areas in the powerhouse. In addition to quantifying what had been previously speculated about the behavior of fish in the forebay of McNary Dam, the Markov chain analysis refined our understanding of how fish behavior and passage can be influenced by changes to the operations and structure of McNary Dam. For example, the addition of TSWs to the spillway area clearly influenced the passage of fish. Previous results have been reported showing that TSWs increased passage through non-turbine routes and the fish-track videos indicated, in general, how fish behaved before passing the TSWs. However, the analysis presented in this report allowed us to better understand how fish transitioned across the face of the dam before passing the TSWs and resulted in a quantitative way to measure the effect of moving the location of the TSWs from year to year. Installation of the TSWs in bays 22 and 20 clearly increased passage proportions through the southern one-third of the spillway area for all species, most significantly for steelhead. When the TSWs were moved to bays 19 and 20 in 2008, overall passage through the southern one-third of the spillway remained higher than 2006, but decreased from what was observed in 2007. Shifting the TSWs to the north decreased the proportion of fish passing through the TSWs and increased the number of fish that transitioned to adjoining areas before passing the dam. Perhaps the most interesting new information to come out of the two-step Markov chain analysis relates to how the performance of the TSWs was influenced by their proximity to the powerhouse. During 2007, the highest proportion of fish passing through TSW 22 was for fish that transitioned from the powerhouse area. In contrast, a relatively low proportion of fish passed through TSW 20 after coming from the powerhouse area. Instead, the proportion of fish that passed TSW 20 after coming from the northern part of the spillway was twice as high as the proportion of fish that passed through TSW 20 after coming from the powerhouse. During 2008, the TSW in bay 22 was moved to bay 19, leaving the TSW in bay 20 as the one closest to the powerhouse. As was the case when a TSW was located in bay 22, the proportion of fish passing through TSW 20 after coming from the powerhouse was higher than the proportion of fish passing TSW 20 after coming from the northern part of the spillway. Passage proportions for fish passing through TSW 19, the farthest north of the two TSWs during 2008, was higher for fish that came from the northern part of the spillway compared to the proportion of fish that passed through TSW 19 after coming from the powerhouse. The Markov chain analysis provided a mathematical way to characterize fish behavior in the forebay of McNary Dam and helped refine our understanding of how fish movements were influenced by operational and structural changes at the dam. The numerical information used to quantify the behavior of fish also can be used to construct simulations to examine how proposed fish passage structures might influence passage of juvenile salmonids. To demonstrate this, we used the results of the Markov chain analysis to examine how a virtual fish collector located in the center of the powerhouse might influence passage of juvenile salmonids at McNary Dam.

Global assessment of the status of coral reef herbivorous fishes: evidence for fishing effects.

PubMed

Edwards, C B; Friedlander, A M; Green, A G; Hardt, M J; Sala, E; Sweatman, H P; Williams, I D; Zgliczynski, B; Sandin, S A; Smith, J E

2014-01-07

On coral reefs, herbivorous fishes consume benthic primary producers and regulate competition between fleshy algae and reef-building corals. Many of these species are also important fishery targets, yet little is known about their global status. Using a large-scale synthesis of peer-reviewed and unpublished data, we examine variability in abundance and biomass of herbivorous reef fishes and explore evidence for fishing impacts globally and within regions. We show that biomass is more than twice as high in locations not accessible to fisheries relative to fisheries-accessible locations. Although there are large biogeographic differences in total biomass, the effects of fishing are consistent in nearly all regions. We also show that exposure to fishing alters the structure of the herbivore community by disproportionately reducing biomass of large-bodied functional groups (scraper/excavators, browsers, grazer/detritivores), while increasing biomass and abundance of territorial algal-farming damselfishes (Pomacentridae). The browser functional group that consumes macroalgae and can help to prevent coral-macroalgal phase shifts appears to be most susceptible to fishing. This fishing down the herbivore guild probably alters the effectiveness of these fishes in regulating algal abundance on reefs. Finally, data from remote and unfished locations provide important baselines for setting management and conservation targets for this important group of fishes.

Mercury in fish from the Madeira River and health risk to Amazonian and riverine populations.

PubMed

Soares, José Maria; Gomes, José M; Anjos, Marcelo R; Silveira, Josianne N; Custódio, Flavia B; Gloria, M Beatriz A

2018-07-01

The objective of this study was to quantify total mercury in highly popular Amazonian fish pacu, curimatã, jaraqui, and sardinha from the Madeira River and to estimate the exposure to methylmercury from fish consumption. The samples were obtained from two locations - Puruzinho Igarapé and Santa Rosa - near Humaitá, Amazonia, Brazil in two seasons of 2015 (high and low waters). The fish were identified, weighed and measured, and lipids were quantified. Total mercury was determined by gold amalgamation-atomic absorption spectrometry. Mean levels were used to calculate exposure of Amazonian and riverine populations. There was significant correlation (p < 0.05) between length × weight for all fish; length × lipid and weight × lipid were significant only for pacu. Total mercury levels varied along muscle tissue for the fish, except for sardinha; therefore muscle from the dorsal area along the fish were sampled, homogenized and used for analysis. The levels of total mercury varied from 0.01 to 0.46 mg/kg, with higher median levels in sardinha (0.24 mg/kg), followed by curimatã (0.16 mg/kg), jaraqui (0.13 mg/kg) and pacu (0.04 mg/kg), corresponding with the respective feeding habits along the trophic chain. Total mercury levels were not affected by the location of fish capture and by high and low waters seasons. Total mercury correlated significantly with length and weight for jaraqui and with length for sardinha (negative correlation). Total mercury levels in fish complied with legislation; however, exposures to methylmercury from fish consumption overpassed the safe intake reference dose for sardinha for Amazonians; however, for the riverine communities, all of the fish would cause potential health risk, mainly for children and women of childbearing age. Copyright © 2018 Elsevier Ltd. All rights reserved.

Metals in Some Edible Fish and Shrimp Species Collected in Dry Season from Subarnarekha River, India.

PubMed

Giri, Soma; Singh, Abhay Kumar

2015-08-01

The concentration of As, Cd, Cu, Fe, Pb, Ni, Zn, Cr, Co and Sr were determined in five fish and one shrimp species collected from the Subarnarekha River during pre-monsoon season using inductively coupled plasma-mass spectrometry for a risk assessment and source apportionment study. Concentrations of metals in the fish and shrimp exceeded the recommended food standards for As, Cu, Ni, Cd and Zn in many samples. Principal component analysis suggested both innate and anthropogenic activities as contributing sources of metal in the fish and shrimp. The calculated target hazard quotients and hazard indices indicated that high concentrations of metals in some species at some locations present an appreciable risk to the health of consumers of these species.

SUMMER FISH COMMUNITY OF THE COASTAL NORTHERN GULF OF MEXICO: CHARACTGERIZATION OF A LARGE-SCALE TRAWL SURVEY

EPA Science Inventory

This paper summarizes the trawled fish assemblage collected during 1992 - 1994 at 119 locations in the northern Gulf of Mexico. The 367 collection sites were located adjacent to five states and represented seven estuarine categories. Fish were collected using an otter trawl durin...

Waste feed from coastal fish farms: A trophic subsidy with compositional side-effects for wild gadoids

NASA Astrophysics Data System (ADS)

Fernandez-Jover, Damian; Martinez-Rubio, Laura; Sanchez-Jerez, Pablo; Bayle-Sempere, Just T.; Lopez Jimenez, Jose Angel; Martínez Lopez, Francisco Javier; Bjørn, Pål-Arne; Uglem, Ingebrigt; Dempster, Tim

2011-03-01

Aquaculture of carnivorous fish species in sea-cages typically uses artificial feeds, with a proportion of these feeds lost to the surrounding environment. This lost resource may provide a trophic subsidy to wild fish in the vicinity of fish farms, yet the physiological consequences of the consumption of waste feed by wild fish remain unclear. In two regions in Norway with intensive aquaculture, we tested whether wild saithe ( Pollachius virens) and Atlantic cod ( Gadus morhua) associated with fish farms (F assoc), where waste feed is readily available, had modified diets, condition and fatty acid (FA) compositions in their muscle and liver tissues compared to fish unassociated (UA) with farms. Stomach content analyses revealed that both cod and saithe consumed waste feed in the vicinity of farms (6-96% of their diet was composed of food pellets). This translated into elevated body and liver condition compared to fish caught distant from farms for cod at both locations and elevated body condition for saithe at one of the locations. As a consequence of a modified diet, we detected significantly increased concentrations of terrestrial-derived fatty acids (FAs) such as linoleic (18:2ω6) and oleic (18:1ω9) acids and decreased concentrations of DHA (22:6ω3) in the muscle and/or liver of F assoc cod and saithe when compared with UA fish. In addition, the ω3:ω6 ratio clearly differed between F assoc and UA fish. Linear discriminant analysis (LDA) correctly classified 97% of fish into F assoc or UA origin for both cod and saithe based on the FA composition of liver tissues, and 89% of cod and 86% of saithe into F assoc or UA origin based on the FA composition of muscle. Thus, LDA appears a useful tool for detecting the influence of fish farms on the FA composition of wild fish. Ready availability of waste feed with high protein and fat content provides a clear trophic subsidy to wild fish in coastal waters, yet whether the accompanying side-effect of altered fatty acid compositions affects physiological performance or reproductive potential requires further research.

Short-term response of subadult white sturgeon to hopper dredge disposal operations

USGS Publications Warehouse

Parsley, Michael J.; Popoff, Nicholas D.; Romine, Jason G.

2011-01-01

The effect of dredged-material disposal operations on the behavior of seven white sturgeon Acipenser transmontanus (50–101 cm fork length) was examined by analysis of the movements and depth use of these fish before, during, and after a series of hopper dredge disposal operations in the lower Columbia River. Analyses of fish locations showed that 12 flow-lane disposal operations within a 24-h period had minimal effect on subadult white sturgeon behavior; six of the seven fish showed slight attraction to the disposal area during disposals, and one fish increased its distance from the disposal area. The core area for all fish combined shifted toward the disposal area during disposals. In the 24 h after completion of the disposal operations the fish core areas shifted back toward those areas occupied before the disposals. The rates of movement, depths used, and diel movement patterns of the white sturgeon showed little change over all periods, suggesting that natural behaviors were not altered during and immediately after hopper dredge disposal operations.

Data from in situ Observations of Fish Traps Set by Fishermen in St. John Waters, U.S. Virgin Islands, 1992-94

USGS Publications Warehouse

Garrison, Virginia H.; Beets, Jim; Friedlander, Alan M.; Canty, Steven

2011-01-01

In order to estimate (1) the trapping pressure within Virgin Islands National Park (VINP) waters, (2) the effect of fish traps on park marine resources (both fishes and habitats), and (3) the effectiveness of park regulations in protecting marine resources, traps set by fishers were visually observed and contents censused in situ in 1992, 1993, and 1994, around St. John (U.S. Virgin Islands), within and outside of park waters. A total of 1,340 individual fish (56 species and 23 families) were identified and their lengths estimated for the 211 of 285 visually censused traps that contained fish. This dataset includes for each censused trap: location, depth, substrate/habitat, trap type and construction details, in or out of park waters, and species and estimated fork length (in centimeters) of each individual fish in a trap. Analysis and interpretation of this dataset are provided in previously published reports by the author.

Fishing down the largest coral reef fish species.

PubMed

Fenner, Douglas

2014-07-15

Studies on remote, uninhabited, near-pristine reefs have revealed surprisingly large populations of large reef fish. Locations such as the northwestern Hawaiian Islands, northern Marianas Islands, Line Islands, U.S. remote Pacific Islands, Cocos-Keeling Atoll and Chagos archipelago have much higher reef fish biomass than islands and reefs near people. Much of the high biomass of most remote reef fish communities lies in the largest species, such as sharks, bumphead parrots, giant trevally, and humphead wrasse. Some, such as sharks and giant trevally, are apex predators, but others such as bumphead parrots and humphead wrasse, are not. At many locations, decreases in large reef fish species have been attributed to fishing. Fishing is well known to remove the largest fish first, and a quantitative measure of vulnerability to fishing indicates that large reef fish species are much more vulnerable to fishing than small fish. The removal of large reef fish by fishing parallels the extinction of terrestrial megafauna by early humans. However large reef fish have great value for various ecological roles and for reef tourism. Copyright © 2014 Elsevier Ltd. All rights reserved.

Semiquantitative analysis of gaps in microbiological performance of fish processing sector implementing current food safety management systems: a case study.

PubMed

Onjong, Hillary Adawo; Wangoh, John; Njage, Patrick Murigu Kamau

2014-08-01

Fish processing plants still face microbial food safety-related product rejections and the associated economic losses, although they implement legislation, with well-established quality assurance guidelines and standards. We assessed the microbial performance of core control and assurance activities of fish exporting processors to offer suggestions for improvement using a case study. A microbiological assessment scheme was used to systematically analyze microbial counts in six selected critical sampling locations (CSLs). Nine small-, medium- and large-sized companies implementing current food safety management systems (FSMS) were studied. Samples were collected three times on each occasion (n = 324). Microbial indicators representing food safety, plant and personnel hygiene, and overall microbiological performance were analyzed. Microbiological distribution and safety profile levels for the CSLs were calculated. Performance of core control and assurance activities of the FSMS was also diagnosed using an FSMS diagnostic instrument. Final fish products from 67% of the companies were within the legally accepted microbiological limits. Salmonella was absent in all CSLs. Hands or gloves of workers from the majority of companies were highly contaminated with Staphylococcus aureus at levels above the recommended limits. Large-sized companies performed better in Enterobacteriaceae, Escherichia coli, and S. aureus than medium- and small-sized ones in a majority of the CSLs, including receipt of raw fish material, heading and gutting, and the condition of the fish processing tables and facilities before cleaning and sanitation. Fish products of 33% (3 of 9) of the companies and handling surfaces of 22% (2 of 9) of the companies showed high variability in Enterobacteriaceae counts. High variability in total viable counts and Enterobacteriaceae was noted on fish products and handling surfaces. Specific recommendations were made in core control and assurance activities associated with sampling locations showing poor performance.

Impact of treated wastewater reuse and floods on water quality and fish health within a water reservoir in an arid climate.

PubMed

Zaibel, Inbal; Zilberg, Dina; Groisman, Ludmila; Arnon, Shai

2016-07-15

Treated wastewater (TWW) reuse for agricultural irrigation is a well-established approach to coping with water shortages in semi-arid and arid environments. Recently, additional uses of TWW have emerged, including streamflow augmentation and aquatic ecosystem restoration. The purpose of the current study was to evaluate the water quality and fish health, in an artificial reservoir located in an arid climate (the Yeruham Reservoir, Israel), which regularly receives TWW and sporadic winter floods. The temporal distribution of water levels, nutrients and organic micropollutants (OMPs) were measured during the years 2013-2014. OMPs were also measured in sediment and fish tissues. Finally, the status of fish health was evaluated by histopathology. Water levels and quality were mainly influenced by seasonal processes such as floods and evaporation, and not by the discharge of TWW. Out of 16 tested OMPs, estrone, carbamazepine, diclofenac and bezafibrate were found in the reservoir water, but mostly at concentrations below the predicted no-effect concentration (PNEC) for fish. Concentrations of PCBs and dioxins in fish muscle and liver were much lower than the EU maximal permitted concentrations, and similar to concentrations that were found in food fish in Israel and Europe. In the histopathological analysis, there were no evident tissue abnormalities, and low to moderate infection levels of fish parasites were recorded. The results from the Yeruham Reservoir demonstrated a unique model for the mixture effect between TWW reuse and natural floods to support a unique stable and thriving ecosystem in a water reservoir located in an arid region. This type of reservoir can be widely used for recreation, education, and the social and economic development of a rural environment, such as has occurred in the Yeruham region. Copyright © 2016 Elsevier B.V. All rights reserved.

Evaluation of Hygienic Quality and Labelling of Fish Distributed in Public Canteens of Northeast Italy

PubMed Central

Armani, Mariachiara; Civettini, Michele; Conedera, Gabriella; Favretti, Michela; Lombardo, Dorotea; Lucchini, Rosaria; Paternolli, Sabrina; Pezzuto, Alessandra; Rabini, Michela; Arcangeli, Giuseppe

2016-01-01

Over the past few years, the demand for the introduction of fish products in public canteens (schools, hospitals and nursing-homes) has grown due to their good nutritional proprieties. The particular health conditions and sensitivity of some groups of consumers exposes them to greater risks of food poisoning. It is therefore important to monitor the raw materials that end up in mass catering implementing strategies of mass catering control, both with self-monitoring strategies and with regular controls performed by the competent health authorities. The purpose of this study is to assess the overall quality of seafood dealt out from public catering services located in Northeast Italy. In this paper we illustrate the results of microbiological analysis performed on 135 fish samples (58% of samples were raw fishes, 27% cooked fishes, 6% raw fish products, 9% cooked fish products) and species identification performed on 102 fish samples. Additionally, 135 environmental swabs were collected to determine the effectiveness of cleaning and sanitation of food contact (cutting boards, cooking equipment and food processing surfaces) and non-contact (refrigerator wall and handle, tap lever) surfaces. Of raw seafood samples, 24% had total aerobic mesophilic bacteria count >105 CFU/g and for Enterobacteriaceae the faecal contamination was excluded since no Salmonella spp. and Escherichia coli were isolated. Just 3.8% of raw seafood samples resulted positive for Listeria monocytogenes. The results of swab samples of cooking utensils and surfaces showed that sanitation practices should be improved. Molecular analysis for fish species identification revealed a mislabelling for 25% of sampled fishes. The results of this survey can provide valuable information for monitoring and surveillance programmes for the control of quality of fish and fish products. PMID:27995098

Guidelines for Eating Fish that Contain Mercury

EPA Pesticide Factsheets

Learn about how to minimize exposure to methylmercury while eating fish. Read about fish advisories, how to use them to consume fish safely, and use the national fish advisories locator to find them in an area near you.

The influence of hook type, angler experience, and fish size on injury rates and the duration of capture in an Alaskan catch-and-release rainbow trout fishery

USGS Publications Warehouse

Meka, Julie M.

2004-01-01

Owing to concerns about the high incidence of past hooking injuries in Alagnak River rainbow trout Oncorhynchus mykiss, fish were captured with spin- and fly-fishing gear with barbed and barbless circle and "J" hooks to determine gear types contributing to injury. Landing and hook removal times were measured for a portion of fish captured, and the anatomical hooking location, hooking scar locations, bleeding intensity, angler experience, and fish size were recorded for all captured fish. Approximately 62% of fish captured experienced at least one new hooking injury, and 29% of fish had at least one past hooking injury. Small fish sustained higher new injury and bleeding rates, but large fish had higher past injury rates. Injury rates were higher for barbed J hooks, barbed J hooks took longer to remove, and fish caught by spin-fishing were injured more frequently than fish caught by fly-fishing. Fewer fly-fishing-caught fish were injured using circle hooks, and circle hooks tended to hook fish in only one location, generally in the jaw. Barbed J hooks were more efficient at landing fish, and J hooks were more efficient at landing fish than circle hooks. Novice anglers injured proportionally more fish than experienced anglers, primarily during hook removal. Landing time was positively correlated with fish size, and experienced anglers took longer to land fish than novices because they captured larger fish. These results suggest that a reduction in hooking injuries may be achieved by using circle hooks as an alternative to J hooks and barbless J hooks to reduce injury and handling time, yet catch efficiency for both methods would be reduced. Although fish captured with barbless J hooks and circle hooks had fewer injuries, it is important to note that each hook type also caused significant injury, and angler education is recommended to promote proper hook removal techniques.

A Markov chain analysis of the movements of juvenile salmonids in the forebay of McNary Dam, Washington and Oregon, 2006-09

USGS Publications Warehouse

Adams, Noah S.; Hatton, Tyson W.

2012-01-01

Passage and survival data for yearling and subyearling Chinook salmon and juvenile steelhead were collected at McNary Dam between 2006 and 2009. These data have provided critical information for resource managers to implement structural and operational changes designed to improve the survival of juvenile salmonids as they migrate past the dam. Much of the information collected at McNary Dam was in the form of three-dimensional tracks of fish movements in the forebay. These data depicted the behavior of multiple species (in three dimensions) during different diel periods, spill conditions, powerhouse operations, and test configurations of the surface bypass structures (temporary spillway weirs; TSWs). One of the challenges in reporting three-dimensional results is presenting the information in a manner that allows interested parties to summarize the behavior of many fish over many different conditions across multiple years. To accomplish this, we investigated the feasibility of using a Markov chain analysis to characterize fish movement patterns in the forebay of McNary Dam. The Markov chain analysis is one way that can be used to summarize numerically the behavior of fish in the forebay. Numerically summarizing the behavior of juvenile salmonids in the forebay of McNary Dam using the Markov chain analysis allowed us to confirm what had been previously summarized using visualization software. For example, proportions of yearling and subyearling Chinook salmon passing the three powerhouse areas was often greater in the southern and middle areas, compared to the northern area. The opposite generally was observed for steelhead. Results of this analysis also allowed us to confirm and quantify the extent of milling behavior that had been observed for steelhead. For fish that were first detected in the powerhouse region, less than 0.10 of the steelhead, on average, passed within each of the powerhouse areas. Instead, steelhead transitioned to adjoining areas in the spillway before passing the dam. In comparison, greater than 0.20 of the Chinook salmon passed within the powerhouse areas. Less milling behavior was observed for all species for fish that first approached the spillway. Compared to the powerhouse areas, a higher proportion of fish, regardless of species, passed the spillway areas and fewer transitioned to adjoining areas in the powerhouse. In addition to quantifying what had been previously speculated about the behavior of fish in the forebay of McNary Dam, the Markov chain analysis refined our understanding of how fish behavior and passage can be influenced by changes to the operations and structure of McNary Dam. For example, the addition of TSWs to the spillway area clearly influenced the passage of fish. Previous results have been reported showing that TSWs increased the number of fish passing through non-turbine routes and the fish-track videos indicated, in general, how fish behaved before passing through the TSWs. However, the analysis presented in this report allowed us to better understand how fish moved across the face of the dam before passing the TSWs and provided a way to quantify the effect of TSW location. Installation of the TSWs in bays 22 and 20 clearly increased passage proportions through the southern one-third of the spillway area for all species, most significantly for steelhead. When the TSWs were moved to bays 19 and 20 in 2008, overall passage through the southern one-third of the spillway remained higher than 2006, but decreased from what was observed in 2007. Shifting the TSWs to the north decreased the proportion of fish passing through the TSWs and increased the number of fish that moved to adjoining areas before passing the dam. Perhaps the most interesting new information to come out of the two-step Markov chain analysis relates to how the performance of the TSWs was influenced by their proximity to the powerhouse. During 2007, the highest proportion of fish passing through TSW22 was for fish that transitioned from the powerhouse area. In contrast, a relatively low proportion of fish passed through TSW20 after coming from the powerhouse area. Instead, the proportion of fish that passed TSW20 after coming from the northern part of the spillway was twice as high as the proportion of fish that passed through TSW20 after coming from the powerhouse. During 2008, the TSW in bay 22 was moved to bay 19, leaving the TSW in bay 20 as the one closest to the powerhouse. As was the case when a TSW was located in bay 22; the proportion of fish passing TSW20 after coming from the powerhouse was greater than the proportion of fish passing through TSW20 after coming from the northern part of the spillway. Passage proportions for fish passing through TSW19, the farthest north of the two TSWs during 2008, was higher for fish that came from the northern part of the spillway compared to the proportion of fish that passed through TSW19 after coming from the powerhouse. The Markov chain analysis provided a mathematical way to characterize fish behavior in the forebay of McNary Dam and helped refine our understanding of how fish movements were influenced by operational and structural changes at McNary Dam. The Markov chain analysis also could be used to examine how future structural and operational changes proposed for McNary Dam might influence the passage of juvenile salmonids.

A Metabolomic Approach To Detect Effects of Salmon Farming on Wild Saithe (Pollachius virens) Populations.

PubMed

Maruhenda Egea, Frutos C; Toledo-Guedes, Kilian; Sanchez-Jerez, Pablo; Ibanco-Cañete, Ricardo; Uglem, Ingebrit; Saether, Bjørn-Steinar

2015-12-16

A metabolomics approach was used to analyze effects of salmon farming on wild saithe (Pollachius virens) populations. Saithe fish were captured at two salmon farms and at two control locations around the island of Hitra, Norway. Changes in diet seem to drive changes in metabolic status of fishes. The liver and muscle tissues, from the fishes captured around the farm, showed higher levels of lactate and certain amino acids (glutamine, glutamate, and alanine) and lower levels of glucose and choline than the fishes captured in the control locations, far from the farm locations. The higher levels of lactate and amino acids could be related to the facility of obtaining food around the farm and the deficit in choline to the deficit of this nutrient in the salmon feed. At each location the fish were captured with either benthic gill nets and automatic jigging machines, and this feature showed also variations in different metabolites.

Altered fish community and feeding behaviour in close proximity to boat moorings in an urban estuary.

PubMed

Lanham, Brendan S; Vergés, Adriana; Hedge, Luke H; Johnston, Emma L; Poore, Alistair G B

2018-04-01

Coastal urbanization has led to large-scale transformation of estuaries, with artificial structures now commonplace. Boat moorings are known to reduce seagrass cover, but little is known about their effect on fish communities. We used underwater video to quantify abundance, diversity, composition and feeding behaviour of fish assemblages on two scales: with increasing distance from moorings on fine scales, and among locations where moorings were present or absent. Fish were less abundant in close proximity to boat moorings, and the species composition varied on fine scales, leading to lower predation pressure near moorings. There was no relationship at the location with seagrass. On larger scales, we detected no differences in abundance or community composition among locations where moorings were present or absent. These findings show a clear impact of moorings on fish and highlight the importance of fine-scale assessments over location-scale comparisons in the detection of the effects of artificial structures. Copyright © 2018 Elsevier Ltd. All rights reserved.

Mixed stock analysis of Lake Michigan's Lake Whitefish Coregonus clupeaformis commercial fishery

USGS Publications Warehouse

Andvik, Ryan; Sloss, Brian L.; VanDeHey, Justin A.; Claramunt, Randall M.; Hansen, Scott P.; Isermann, Daniel A.

2016-01-01

Lake whitefish (Coregonus clupeaformis) support the primary commercial fishery in Lake Michigan. Discrete genetic stocks of lake whitefish have been identified and tagging data suggest stocks are mixed throughout much of the year. Our objectives were to determine if (1) differential stock harvest occurs in the commercial catch, (2) spatial differences in genetic composition of harvested fish were present, and (3) seasonal differences were present in the harvest by commercial fisheries that operate in management zones WI-2 and WFM-01 (Green Bay, Lake Michigan). Mixed stock analysis was conducted on 17 commercial harvest samples (n = 78–145/sample) collected from various ports lake-wide during 2009–2010. Results showed significant mixing with variability in stock composition across most samples. Samples consisted of two to four genetic stocks each accounting for ≥ 10% the catch. In 10 of 17 samples, the stock contributing the largest proportion made up < 60% of the harvest. In general, seasonal and annual differences existed in the proportional stock contribution at a single capture location. Samples from Wisconsin's primary commercial fishing management zone (WI-2) were composed predominately of fish from the Big Bay de Noc (Michigan) stock as opposed to the geographically proximate, North–Moonlight Bay (Wisconsin) stock. These findings have implications for management and allocation of fish to various quotas. Specifically, geographic location of harvest, the current means of allocating harvest quotas, is not the best predictor of genetic stock harvest.

Investigating phenology of larval fishes in St. Louis River ...

EPA Pesticide Factsheets

As part of the development of an early detection monitoring strategy for non-native fishes, larval fish surveys have been conducted since 2012 in the St. Louis River estuary. Survey data demonstrates there is considerable variability in fish abundance and species assemblages across different habitats and at multiple temporal scales. To optimize early detection monitoring we need to understand temporal and spatial patterns of larval fishes related to their development and dispersion, as well as the environmental factors that influence them. In 2016 we designed an experiment to assess the phenological variability in larval fish abundance and assemblages amongst shallow water habitats. Specifically, we sought to contrast different thermal environments and turbidity levels, as well as assess the importance of vegetation in these habitats. To evaluate phenological differences we sampled larval fish bi-weekly at nine locations from mid-May to mid-July. Sampling locations were split between upper estuary and lower estuary to contrast river versus seiche influenced habitats. To assess differences in thermal environments, temperature was monitored every 15 minutes at each sampling location throughout the study, beginning in early April. Our design also included sampling at both vegetated (or pre-vegetated) and non-vegetated stations within each sampling location throughout the study to assess the importance of this habitat variable. Hydroacoustic surveys (Biosonics) were

Molecular identification of polymers and anthropogenic particles extracted from oceanic water and fish stomach - A Raman micro-spectroscopy study.

PubMed

Ghosal, Sutapa; Chen, Michael; Wagner, Jeff; Wang, Zhong-Min; Wall, Stephen

2018-02-01

Pacific Ocean trawl samples, stomach contents of laboratory-raised fish as well as fish from the subtropical gyres were analyzed by Raman micro-spectroscopy (RMS) to identify polymer residues and any detectable persistent organic pollutants (POP). The goal was to access specific molecular information at the individual particle level in order to identify polymer debris in the natural environment. The identification process was aided by a laboratory generated automated fluorescence removal algorithm. Pacific Ocean trawl samples of plastic debris associated with fish collection sites were analyzed to determine the types of polymers commonly present. Subsequently, stomach contents of fish from these locations were analyzed for ingested polymer debris. Extraction of polymer debris from fish stomach using KOH versus ultrapure water were evaluated to determine the optimal method of extraction. Pulsed ultrasonic extraction in ultrapure water was determined to be the method of choice for extraction with minimal chemical intrusion. The Pacific Ocean trawl samples yielded primarily polyethylene (PE) and polypropylene (PP) particles >1 mm, PE being the most prevalent type. Additional microplastic residues (1 mm - 10 μm) extracted by filtration, included a polystyrene (PS) particle in addition to PE and PP. Flame retardant, deca-BDE was tentatively identified on some of the PP trawl particles. Polymer residues were also extracted from the stomachs of Atlantic and Pacific Ocean fish. Two types of polymer related debris were identified in the Atlantic Ocean fish: (1) polymer fragments and (2) fragments with combined polymer and fatty acid signatures. In terms of polymer fragments, only PE and PP were detected in the fish stomachs from both locations. A variety of particles were extracted from oceanic fish as potential plastic pieces based on optical examination. However, subsequent RMS examination identified them as various non-plastic fragments, highlighting the importance of chemical analysis in distinguishing between polymer and non-polymer residues. Copyright © 2017 Elsevier Ltd. All rights reserved.

Survival of hatchery-reared lake trout stocked near shore and off shore in Lake Ontario

USGS Publications Warehouse

Elrod, Joseph H.

1997-01-01

Establishing a stock of mature, hatchery-reared fish is necessary to restore a self-sustaining population of lake trout Salvelinus namaycush in Lake Ontario. Stocking fish off shore rather than near shore to reduce predation on these fish by large lake trout or piscivorous birds may enhance survival of hatchery-reared fish and accelerate establishment of a population of adults. Results of an earlier study did not support routinely stocking fish off shore by helicopter in Lake Ontario, but stresses associated with helicopter stocking suggested another method of transporting fish off shore might enhance survival. I conducted this study to determine whether stocking lake trout off shore by barge would enhance first-year survival. Two lots of yearling lake trout were stocked at each of four locations in Lake Ontario in May 1992. One lot was stocked from shore, and an identical lot was transported by barge 3.4–10.4 km off shore of nearshore locations and stocked in water 46–52 m deep. Fish were recovered during trawl, gillnet, and creel surveys in 1992–1996. First-year survival of lake trout stocked off shore tended to be better than that of fish stocked near shore. Predation by double-crested cormorantsPhalacrocorax auritus likely affected survival of fish stocked near shore at two locations, 7 and 37 km, respectively, from a nesting colony of 5,443 pairs of double-crested cormorants. Predation by large lake trout remains a viable hypothesis, which explains, at least partially, lower survival of lake trout stocked near shore at two other locations. Stocking lake trout off shore of traditional nearshore stocking sites likely will enhance first-year survival of hatchery-reared fish and promote accumulation of an adult population, especially for those occassions where nearshore stocking locations are near nesting colonies of double-crested cormorants.

Temporal and spatial variability of pelagic wild fish assemblages around Atlantic bluefin tuna Thunnus thynnus farms in the eastern Adriatic Sea.

PubMed

Segvić Bubić, T; Grubišić, L; Tičina, V; Katavić, I

2011-01-01

The abundance and size structure of wild fishes aggregated around the sea-cages of two commercial Thunnus thynnus farms, including control locations, were assessed and compared over a 1 year period. The T. thynnus farms were located in the eastern Adriatic Sea, offshore of the islands of Ugljan and Brač. Fish assemblages were evaluated through visual census using scuba at 2 month intervals at two sites within each farm. The data suggest that wild fish assemblages at the study sites differed greatly; 20 species occurred at the Ugljan farm and 17 at the Brač farm, while only seven species were observed at the control locations. The abundance and diversity of wild fish assemblages were greater at the farms in comparison to control locations. The most abundant families were Sparidae and Belonidae (>80% of aggregated fishes). At both farms, the abundance and diversity of wild fishes were highest during summer, while diversity was lowest in winter and was mainly characterized by schools of bogue Boops boops and garfish Belone belone. Variability was also detected in spatial assemblages between farms; B. boops and B. belone were the most abundant species for the overall study at the Brač farm, while B. belone and saddled bream Oblada melanura were the most abundant at the Ugljan farm. The settlement also played a significant role in farm-associated fish assemblages, as both juveniles and advanced juveniles were common residents at farms. The majority of species which settled at the farms belonged to the sparids. Results indicate that aggregations of wild fishes at T. thynnus farms are persistent year-round, though the assemblage compositions and size structures of dominant species vary in respect to location and season. © 2011 The Authors. Journal of Fish Biology © 2011 The Fisheries Society of the British Isles.

City Fishing.

ERIC Educational Resources Information Center

Lange, Robert E.

1979-01-01

A program of supplying opportunities for fishing at locations within and near urban areas was developed. This effort included stocking, management of bodies of water for fishing, and presentation of fishing clinics for urban fishermen. (RE)

Autumn larval fish assemblages in the northwest African Atlantic coastal zone

NASA Astrophysics Data System (ADS)

Abdelouahab, Hinde; Berraho, Amina; Baibai, Tarik; Agouzouk, Aziz; Makaoui, Ahmed; Errhif, Ahmed

2017-05-01

A study on the assemblage composition and vertical distribution of larval fish was conducted in the southern area of the Moroccan Atlantic coast in Autumn 2011. A total of 1 680 fish larvae taxa were identified from 21 families. The majority of the larvae were present in the upper layers. Clupeids were the most abundant larvae taxa followed by Myctophidae, Gadidae and Sparidae, hence the larval fish assemblages (LFA) were variable in diff erent depth layers. Total fish larvae showed a preference for surface layers, and were mainly found above 75 m depth, with some exceptions. The maximum concentration of fish larvae was concentrated up to 25 m essentially above the thermocline, where chlorophyll a and mesozooplankton were abundant. Spatially, neritic families were located near the coast and at some off shore stations especially in the northern part, while oceanic families were more distributed towards off shore along the study area. Cluster analysis showed a segregation of two groups of larvae. However, a clear separation between neritic families and oceanic families was not found. Multivariate analysis highlighted the relationship between the distribution of larvae of diff erent families and environmental parameters. Temperature and salinity seem to have been the factors that acted on associations of fish larvae. Day/night vertical distributions suggest there was not a very significant vertical migration, probably due to adequate light levels for feeding.

Comparison of Reef Fish Survey Data Gathered by Open and Closed Circuit SCUBA Divers Reveals Differences in Areas With Higher Fishing Pressure

PubMed Central

Stamoulis, Kostantinos A.; Boland, Raymond C.; Lino, Kevin C.; Hauk, Brian B.; Leonard, Jason C.; Asher, Jacob M.; Lopes, Keolohilani H.; Kosaki, Randall K.

2016-01-01

Visual survey by divers using open-circuit (OC) SCUBA is the most widely used approach to survey coral reef fishes. Therefore, it is important to quantify sources of bias in OC surveys, such as the possibility that avoidance of OC divers by fishes can lead to undercounting in areas where targeted species have come to associate divers with a risk of being speared. One potential way to reduce diver avoidance is to utilize closed circuit rebreathers (CCRs), which do not produce the noise and bubbles that are a major source of disturbance associated with OC diving. For this study, we conducted 66 paired OC and CCR fish surveys in the Main Hawaiian Islands at locations with relatively high, moderate, and light fishing pressure. We found no significant differences in biomass estimates between OC and CCR surveys when data were pooled across all sites, however there were differences at the most heavily fished location, Oahu. There, biomass estimates from OC divers were significantly lower for several targeted fish groups, including surgeonfishes, targeted wrasses, and snappers, as well as for all targeted fishes combined, with mean OC biomass between 32 and 68% of mean CCR biomass. There were no clear differences between OC and CCR biomass estimates for these groups at sites with moderate or low fishing pressure, or at any location for other targeted fish groups, including groupers, parrotfishes, and goatfishes. Bias associated with avoidance of OC divers at heavily fished locations could be substantially reduced, or at least calibrated for, by utilization of CCR. In addition to being affected by fishing pressure, the extent to which avoidance of OC divers is problematic for visual surveys varies greatly among taxa, and is likely to be highly influenced by the survey methodology and dimensions used. PMID:27936044

Comparison of Reef Fish Survey Data Gathered by Open and Closed Circuit SCUBA Divers Reveals Differences in Areas With Higher Fishing Pressure.

PubMed

Gray, Andrew E; Williams, Ivor D; Stamoulis, Kostantinos A; Boland, Raymond C; Lino, Kevin C; Hauk, Brian B; Leonard, Jason C; Rooney, John J; Asher, Jacob M; Lopes, Keolohilani H; Kosaki, Randall K

2016-01-01

Visual survey by divers using open-circuit (OC) SCUBA is the most widely used approach to survey coral reef fishes. Therefore, it is important to quantify sources of bias in OC surveys, such as the possibility that avoidance of OC divers by fishes can lead to undercounting in areas where targeted species have come to associate divers with a risk of being speared. One potential way to reduce diver avoidance is to utilize closed circuit rebreathers (CCRs), which do not produce the noise and bubbles that are a major source of disturbance associated with OC diving. For this study, we conducted 66 paired OC and CCR fish surveys in the Main Hawaiian Islands at locations with relatively high, moderate, and light fishing pressure. We found no significant differences in biomass estimates between OC and CCR surveys when data were pooled across all sites, however there were differences at the most heavily fished location, Oahu. There, biomass estimates from OC divers were significantly lower for several targeted fish groups, including surgeonfishes, targeted wrasses, and snappers, as well as for all targeted fishes combined, with mean OC biomass between 32 and 68% of mean CCR biomass. There were no clear differences between OC and CCR biomass estimates for these groups at sites with moderate or low fishing pressure, or at any location for other targeted fish groups, including groupers, parrotfishes, and goatfishes. Bias associated with avoidance of OC divers at heavily fished locations could be substantially reduced, or at least calibrated for, by utilization of CCR. In addition to being affected by fishing pressure, the extent to which avoidance of OC divers is problematic for visual surveys varies greatly among taxa, and is likely to be highly influenced by the survey methodology and dimensions used.

Mesohabitat indicator species in a coastal stream of the Atlantic rainforest, Rio de Janeiro-Brazil.

PubMed

Rezende, Carla Ferreira; Moraes, Maíra; Manna, Luisa Resende; Leitão, Rafael Pereira; Caramaschi, Erica Pelegrinni; Mazzoni, Rosana

2010-12-01

The Mato Grosso is a typical Atlantic Forest stream located on the East coast of Brazil, approximately 70 km from Rio de Janeiro city. From its source at about 800m a.s.l, the stream drains a 30km2 area of the Northwestern part of the municipality of Saquarema, state of Rio de Janeiro and flows into the Saquarema Lagoon system. We hypothesized that fish species occupy distinct mesohabitats, with the prediction that their occurrences and densities differ among the microhabitats of riffles, runs and pools. A 250m-long stretch of the stream located in its uppermost part was selected for this study, where it becomes second-order. Mesohabitat description and their fish characterization were undertaken. Fish sampling was conducted by electroshocking and after their identification and counting, they were returned to the stream. For mesohabitat characterization, a Discriminant Function Analysis (DA) was applied. The total number of samples was estimated by the Zippin method and the recorded densities were used as an Indicator Species Analysis (ISA), followed by a Monte Carlo test for 1 000 permutations. The DA significantly separated the three predetermined mesohabitats (pool, riffle and run) (WL = 0.13, F = 187.70, p = 0.001). We found five species of fishes, belonging to four families and three orders. The fishes Rhamdia quelen, Phalloceros harpagos, Pimelodella lateristriga and Astyanax taeniatus are indicators of the pool environment in the Mato Grosso stream, whereas Characidium cf. vidali is an indicator of the riffle environment. The Monte Carlo test detected non-random mesohabitat use only for P. lateristriga and A. taeniatus in the pools and for Characidium cf. vidali in the riffles. We concluded that the Mato Grosso stream contains three well-defined mesohabitats, with indicator species present in two of these mesohabitats.

Contaminants of emerging concern in the Great Lakes Basin: A report on sediment, water, and fish tissue chemistry collected in 2010-2012

USGS Publications Warehouse

Choy, Steven J.; Annis, Mandy L.; Banda, JoAnn; Bowman, Sarah R.; Brigham, Mark E.; Elliott, Sarah M.; Gefell, Daniel J.; Jankowski, Mark D.; Jorgenson, Zachary G.; Lee, Kathy E.; Moore, Jeremy N.; Tucker, William A.

2017-01-01

Despite being detected at low levels in surface waters and sediments across the United States, contaminants of emerging concern (CECs) in the Great Lakes Basin are not well characterized in terms of spatial and temporal occurrence. Additionally, although the detrimental effects of exposure to CECs on fish and wildlife have been documented for many CECs in laboratory studies, we do not adequately understand the implications of the presence of CECs in the environment. Based on limited studies using current environmentally relevant concentrations of chemicals, however, risks to fish and wildlife are evident. As a result, there is an increasing urgency to address data gaps that are vital to resource management decisions. The U.S. Fish and Wildlife Service, in collaboration with the U.S. Geological Survey, is leading a Great Lakes Basin-wide evaluation of CECs (CEC Project) with the objectives to (a) characterize the spatial and temporal distribution of CECs; (b) evaluate risks to fish and wildlife resources; and (c) develop tools to aid resource managers in detecting, averting, or minimizing the ecological consequences to fish and wildlife that are exposed to CECs. This report addresses objective (a) of the CEC Project, summarizing sediment and water chemistry data collected from 2010 to 2012 and fish liver tissue chemistry data collected in 2012; characterizes the sampling locations with respect to potential sources of CECs in the landscape; and provides an initial interpretation of the variation in CEC concentrations relative to the identified sources. Data collected during the first three years of our study, which included 12 sampling locations and analysis of 134 chemicals, indicate that contaminants were more frequently detected in sediment compared to water. Chemicals classified as alkyphenols, flavors/ fragrances, hormones, PAHs, and sterols had higher average detection frequencies in sediment compared to water, while the opposite was observed for pesticides, pharmaceuticals, and plasticizers/flame retardants. The St. Louis River and Maumee River sampling locations had the most CEC detections in water and sediment, relative to other sites, as well as the largest number of maximum detected concentrations across all sites in the Basin. No consistent temporal CEC occurrence patterns were observed at locations sampled multiple times each day. Most appearances and increases in chemical concentrations in sediments occurred at sites immediately downstream from wastewater treatment plants and at sites with predominantly developed land use. The location with the most observed appearances and increases was the St. Louis River. Perfluorinated compounds were commonly detected in fish liver tissues with detections in 100% of both benthic and pelagic species. The occurrence of these chemicals in liver tissue of benthic and pelagic species was generally similar. Abstract

7 CFR Exhibit K to Subpart G of... - Locations and Telephone Numbers of U.S. Fish and Wildlife Service's Wetland Coordinators

Code of Federal Regulations, 2013 CFR

2013-01-01

... Wildlife Service's Wetland Coordinators K Exhibit K to Subpart G of Part 1940 Agriculture Regulations of... Part 1940—Locations and Telephone Numbers of U.S. Fish and Wildlife Service's Wetland Coordinators The U.S. Fish and Wildlife Service (FWS) is presently preparing the National Wetlands Inventory. Each...

7 CFR Exhibit K to Subpart G of... - Locations and Telephone Numbers of U.S. Fish and Wildlife Service's Wetland Coordinators

Code of Federal Regulations, 2010 CFR

2010-01-01

... Wildlife Service's Wetland Coordinators K Exhibit K to Subpart G of Part 1940 Agriculture Regulations of... Part 1940—Locations and Telephone Numbers of U.S. Fish and Wildlife Service's Wetland Coordinators The U.S. Fish and Wildlife Service (FWS) is presently preparing the National Wetlands Inventory. Each...

7 CFR Exhibit K to Subpart G of... - Locations and Telephone Numbers of U.S. Fish and Wildlife Service's Wetland Coordinators

Code of Federal Regulations, 2012 CFR

2012-01-01

... Wildlife Service's Wetland Coordinators K Exhibit K to Subpart G of Part 1940 Agriculture Regulations of... Part 1940—Locations and Telephone Numbers of U.S. Fish and Wildlife Service's Wetland Coordinators The U.S. Fish and Wildlife Service (FWS) is presently preparing the National Wetlands Inventory. Each...

7 CFR Exhibit K to Subpart G of... - Locations and Telephone Numbers of U.S. Fish and Wildlife Service's Wetland Coordinators

Code of Federal Regulations, 2011 CFR

2011-01-01

... Wildlife Service's Wetland Coordinators K Exhibit K to Subpart G of Part 1940 Agriculture Regulations of... Part 1940—Locations and Telephone Numbers of U.S. Fish and Wildlife Service's Wetland Coordinators The U.S. Fish and Wildlife Service (FWS) is presently preparing the National Wetlands Inventory. Each...

7 CFR Exhibit K to Subpart G of... - Locations and Telephone Numbers of U.S. Fish and Wildlife Service's Wetland Coordinators

Code of Federal Regulations, 2014 CFR

2014-01-01

... Wildlife Service's Wetland Coordinators K Exhibit K to Subpart G of Part 1940 Agriculture Regulations of... Part 1940—Locations and Telephone Numbers of U.S. Fish and Wildlife Service's Wetland Coordinators The U.S. Fish and Wildlife Service (FWS) is presently preparing the National Wetlands Inventory. Each...

Radiocarbon reservoir between charred seeds and fish bone in Neolithic sites, northeastern Qinghai-Tibetan Plateau

NASA Astrophysics Data System (ADS)

Zhou, A.; Dong, G.; Ren, L.

2017-12-01

Many efforts have been done to understand the reservoir effect of Qinghai Lake, yet no agreement has been reached. Five archaeological sites, located around the junction between the estuary of Rivers and Qinghai Lake, are the earliest Neolithic Age sites in the Qinghai- Tibetan Plateau (QTP), which is critical for understanding patterns of prehistoric human inhabitation in the high plateau extreme environments. This study compares radiocarbon dates of fish bones and terrestrial plant remains uncovered from the same archaeological strata to see whether there was reservoir effect reference to reliable data. Results demonstrate that there were reservoir effects ranging from 300 to 600 years back to 3600 years ago, nevertheless, no reservoir was observed of the modern fish. Besides, stable isotopic analysis illustrated that modern fish consumed similar food to those of millennias ago.

Coral reef grazer-benthos dynamics complicated by invasive algae in a small marine reserve

PubMed Central

Stamoulis, Kostantinos A.; Friedlander, Alan M.; Meyer, Carl G.; Fernandez-Silva, Iria; Toonen, Robert J.

2017-01-01

Blooms of alien invasive marine algae have become common, greatly altering the health and stability of nearshore marine ecosystems. Concurrently, herbivorous fishes have been severely overfished in many locations worldwide, contributing to increases in macroalgal cover. We used a multi-pronged, interdisciplinary approach to test if higher biomass of herbivorous fishes inside a no-take marine reserve makes this area more resistant to invasive algal overgrowth. Over a two year time period, we (1) compared fish biomass and algal cover between two fished and one unfished patch reef in Hawai’i, (2) used acoustic telemetry to determine fidelity of herbivorous fishes to the unfished reef, and (3) used metabarcoding and next-generation sequencing to determine diet composition of herbivorous fishes. Herbivore fish biomass was significantly higher in the marine reserve compared to adjacent fished reefs, whereas invasive algal cover differed by species. Herbivorous fish movements were largely confined to the unfished patch reef where they were captured. Diet analysis indicated that the consumption of invasive algae varied among fish species, with a high prevalence of comparatively rare native algal species. Together these findings demonstrate that the contribution of herbivores to coral reef resilience, via resistance to invasive algae invasion, is complex and species-specific. PMID:28276458

Defining fish nursery habitats: an application of otolith elemental fingerprinting in Tampa Bay, Florida

USGS Publications Warehouse

Ley, Janet A.; McIvor, Carole C.; Peebles, Ernst B; Rolls, Holly; Cooper, Suzanne T.

2009-01-01

Fishing in Tampa Bay enhances the quality of life of the area's residents and visitors. However, people's desire to settle along the Bay's shorelines and tributaries has been detrimental to the very habitat believed to be crucial to prime target fishery species. Common snook (Centropomus undecimalis) and red drum (Sciaenops ocellatus) are part of the suite of estuarine fishes that 1) are economically or ecologically prominent, and 2) have complex life cycles involving movement between open coastal waters and estuarine nursery habitats, including nursery habitats that are located within upstream, low-salinity portions of the Bay?s tidal tributaries. We are using an emerging microchemical technique -- elemental fingerprinting of fish otoliths -- to determine the degree to which specific estuarine locations contribute to adult fished populations in Tampa Bay. In ongoing monitoring surveys, over 1,000 young-of-the-year common snook and red drum have already been collected from selected Tampa Bay tributaries. Using laser ablation-inductively coupled plasma - mass spectrometry (LA-ICP-MS), we are currently processing a subsample of these archived otoliths to identify location-specific fingerprints based on elemental microchemistry. We will then analyze older fish from the local fishery in order to match them to their probable nursery areas, as defined by young-of-the-year otoliths. We expect to find that some particularly favorable nursery locations contribute disproportionately to the fished population. In contrast, other nursery areas may be degraded, or act as 'sinks', thereby decreasing their contribution to the fish population. Habitat managers can direct strategic efforts to protect any nursery locations that are found to be of prime importance in contributing to adult stocks.

7. FIRST FLOOR, INTERIOR, DETAIL OF FISH SMOKING OVEN LOCATED ...

Library of Congress Historic Buildings Survey, Historic Engineering Record, Historic Landscapes Survey

7. FIRST FLOOR, INTERIOR, DETAIL OF FISH SMOKING OVEN LOCATED IN NORTH END OF BUILDING, ALONG WEST WALL; LOOKING WEST - Gerber Sheet Metal Works Building, 128 Porthand Avenue, South, Minneapolis, Hennepin County, MN

Habitat modeling for brown trout population in alpine region of Slovenia with focus on determination of preference functions, fuzzy rules and fuzzy sets

NASA Astrophysics Data System (ADS)

Santl, Saso; Carf, Masa; Preseren, Tanja; Jenic, Aljaz

2013-04-01

Water withdrawals and consequently reduction of discharges in river streams for different water uses (hydro power, irrigation, etc.) usually impoverish habitat suitability for naturally present river fish fauna. In Slovenia reduction of suitable habitats resulting from water abstractions frequently impacts local brown trout (Salmo truta) populations. This is the reason for establishment of habitat modeling which can qualitatively and quantitatively support decision making for determination of the environmental flow and other mitigation measures. Paper introduces applied methodology for habitat modeling where input data preparation and elaboration with required accuracy has to be considered. For model development four (4) representative and heterogeneous sampling sites were chosen. Two (2) sampling sections were located within the sections with small hydropower plants and were considered as sections affected by water abstractions. The other two (2) sampling sections were chosen where there are no existing water abstractions. Precise bathymetric mapping for chosen river sections has been performed. Topographic data and series of discharge and water level measurements enabled establishment of calibrated hydraulic models, which provide data on water velocities and depths for analyzed discharges. Brief field measurements were also performed to gather required data on dominant and subdominant substrate size and cover type. Since the accuracy of fish distribution on small scale is very important for habitat modeling, a fish sampling method had to be selected and modified for existing river microhabitats. The brown trout specimen's locations were collected with two (2) different sampling methods. A method of riverbank observation which is suitable for adult fish in pools and a method of electro fishing for locating small fish and fish in riffles or hiding in cover. Ecological and habitat requirements for fish species vary regarding different fish populations as well as eco and hydro morphological types of streams. Therefore, if habitat modeling for brown trout in Slovenia should be applied, it is necessary to determine preference requirements for the locally present brown trout populations. For efficient determination of applied preference functions and linked fuzzy sets/rules, beside expert determination, calibration according to field sampling must also be performed. After this final step a model is prepared for the analysis to support decision making in the field of environmental flow and other mitigation measures determination.

Isotopic structure of Lake Whitefish in Lake Huron: Evidence for regional and local populations based on resource use

USGS Publications Warehouse

Eberts, Rebecca L.; Wissel, Bjorn; Simpson, Gavin L.; Crawford, Stephen S.; Stott, Wendylee; Hanner, Robert H.; Manzon, Richard G.; Wilson, Joanna Y.; Boreham, Douglas R.; Somers, Christopher M.

2017-01-01

Lake Whitefish Coregonus clupeaformis is the most commercially valuable species in Lake Huron. The fishery for this species has historically been managed based on 25 management units (17 in Canada, 8 in the USA). However, congruence between the contemporary population structure of Lake Whitefish and management units is poorly understood. We used stable isotopes of carbon (δ13C) and nitrogen (δ15N), food web markers that reflect patterns in resource use (i.e., prey, location, habitat), to assess the population structure of spawning-phase Lake Whitefish collected from 32 sites (1,474 fish) across Lake Huron. We found large isotopic variation among fish from different sites (ranges: δ13C = 10.2‰, δ15N = 5.5‰) and variable niche size and levels of overlap (standard ellipse area = 1.0–4.3‰2). Lake Huron contained spawning-phase fish from four major isotopic clusters largely defined by extensive variation in δ13C, and the isotopic composition of fish sampled was spatially structured both within and between lake basins. Based on cluster compositions, we identified six putative regional groups, some of which represented sites of high diversity (three to four clusters) and others with less (one to two clusters). Analysis of isotopic values from Lake Whitefish collected from summer feeding locations and baseline prey items showed similar isotopic variation and established spatial linkage between spawning-phase and summer fish. Our results show that summer feeding location contributes strongly to the isotopic structure we observed in spawning-phase fish. One of the regional groups we identified in northern Georgian Bay is highly distinct based on isotopic composition and possibly ecologically unique within Lake Huron. Our findings are congruent with several previous studies using different markers (genetics, mark–recapture), and we conclude that current management units are generally too small and numerous to reflect the population structure of Lake Whitefish in Lake Huron.

Factors for improved fish passage waterway construction.

DOT National Transportation Integrated Search

2011-06-01

Streambeds are important fish passageways in Oregon; they provide for the necessary habitats and spawning cycles of a healthy fish population. Oregon state law requires that hydraulic structures located in water properly provide fish passage. Increas...

A Global View of Large-Scale Commercial Fishing

NASA Astrophysics Data System (ADS)

Kroodsma, D.

2016-12-01

Advances in big data processing and satellite technology, combined with the widespread adoption of Automatic Identification System (AIS) devices, now allow the monitoring of fishing activity at a global scale and in high resolution. We analyzed AIS data from more than 40,000 vessels from 2012-2015 to produce 0.1 degree global daily maps of apparent fishing effort. Vessels were matched to publically accessible fishing vessel registries and identified as fishing vessels through AIS Type 5 and Type 24 self-reported messages. Fishing vessels that broadcasted false locations in AIS data were excluded from the analysis. To model fishing pattern classification, a subset of fishing vessels were analyzed and specific movements were classified as "fishing" or "not fishing." A logistic regression model was fitted to these classifications using the following features: a vessel's average speed, the standard deviation of its speed, and the standard deviation of its course over a 12 hour time window. We then applied this model to the entire fishing vessel dataset and time normalized it to produce a global map of fishing hours. The resulting dataset allows for numerous new analyses. For instance, it can assist with monitoring apparent fishing activity in large pelagic marine protected areas and restricted gear use areas, or it can quantify how activity may be affected by seasonal or annual changes in biological productivity. This dataset is now published and freely available in Google's Earth Engine platform, available for researchers to answer a host of questions related to global fishing effort.

Morphological and molecular characterization of a marine fish trypanosome from South Africa, including its development in a leech vector.

PubMed

Hayes, Polly M; Lawton, Scott P; Smit, Nico J; Gibson, Wendy C; Davies, Angela J

2014-01-24

Trypanosomes are ubiquitous blood parasites of marine and freshwater fishes, typically transmitted by aquatic leeches. Phylogenetic studies have been dominated by examples derived from freshwater fishes, with few marine representatives. Furthermore, life cycle studies on marine fish trypanosomes have focused on those of the northern hemisphere. In this investigation, we have examined the life cycle and molecular taxonomy of a marine fish trypanosome from South Africa. To locate trypanosome stages, leeches were removed from fishes captured on the west and south coasts of South Africa, and fish blood films and leech squashes were Giemsa-stained and screened; leeches were also examined histologically. To determine whether trypanosome stages in fishes and leeches were of the same genotype, DNA was extracted from Giemsa-stained fish blood films and leech squashes, and from fish whole blood. Fragments of the 18S rRNA gene were amplified by PCR using trypanosome-specific primers and sequenced. Resulting sequence data were compared with each other and with published trypanosome 18S rDNA sequences, and used for phylogenetic analysis. Trypanosomes were detected in blood films from fishes of the families Clinidae, Blenniidae and Gobiidae. The flagellates ranged in size and staining properties within the films and across fish hosts. In squashes and histological sections of adult and juvenile leeches, identified as Zeylanicobdella arugamensis, trypanosome developmental stages were predominantly slender epimastigotes. Sequence data showed that trypanosomes derived from fishes were identical, irrespective of whether they were small or large forms; sequences derived largely from leech epimastigotes were also identical to those obtained from fish trypanosomes. Fish and leech trypanosome sequences fell into a marine fish aquatic clade, and aligned most closely with two trypanosome sequences from marine fishes off Norway. Combined morphological and molecular methods indicate that the trypanosomes examined here represent a single pleomorphic species, rather than the three species described originally. This species is identified as Trypanosoma nudigobii Fantham, 1919 with the leech Z. arugamensis as its vector, and T. capigobii Fantham, 1919 and T. blenniclini Fantham, 1930 are regarded as junior synonyms of the species. Phylogenetic analysis establishes its affinity with marine fish trypanosomes off Norway.

Lethality of sea lamprey attacks on lake trout in relation to location on the body surface

USGS Publications Warehouse

Bergstedt, Roger A.; Schneider, Clifford P.; O'Gorman, Robert

2001-01-01

We compared the locations of healed attack marks of the sea lamprey Petromyzon marinus on live lake trout Salvelinus namaycush with those of unhealed attack marks on dead lake trout to determine if the lethality of a sea lamprey attack was related to attack location. Lake trout were collected from Lake Ontario, live fish with gill nets in September 1985 and dead fish with trawls in October 1983−1986. Attack location was characterized by the percent distances from snout to tail and from the ventral to the dorsal midline. Kolmogorov−Smirnov two-sample tests did not detect significant differences in the distribution of attack location along either the anteroposterior axis or the dorsoventral axis. When attack locations were grouped into six anatomical regions historically used to record sea lamprey attacks, dead fish did not exhibit a significantly higher proportion of attacks in the more anterior regions. Even if the differences in attack location on live and dead fish were significant, they were too small to imply substantial spatial differences in attack lethality that should be accounted for when modeling the effects of sea lampreys feeding on lake trout. We suggest that the tendency for sea lamprey attacks to occur on the anterior half of the fish is related to the lower amplitude of lateral body movement there during swimming and thus the lower likelihood of being dislodged.

Fish communities in coastal freshwater ecosystems: the role of the physical and chemical setting.

PubMed

Arend, Kristin K; Bain, Mark B

2008-12-29

We explored how embayment watershed inputs, morphometry, and hydrology influence fish community structure among eight embayments located along the southeastern shoreline of Lake Ontario, New York, USA. Embayments differed in surface area and depth, varied in their connections to Lake Ontario and their watersheds, and drained watersheds representing a gradient of agricultural to forested land use. We related various physicochemical factors, including total phosphorus load, embayment area, and submerged vegetation, to differences in fish species diversity and community relative abundance, biomass, and size structure both among and within embayments. Yellow perch (Perca flavescens) and centrarchids numerically dominated most embayment fish communities. Biomass was dominated by piscivorous fishes including brown bullhead (Ameiurus nebulosus), bowfin (Amia calva), and northern pike (Esox lucius). Phosphorus loading influenced relative biomass, but not species diversity or relative abundance. Fish relative abundance differed among embayments; within embayments, fish abundance at individual sampling stations increased significantly with submerged vegetative cover. Relative biomass differed among embayments and was positively related to total phophorus loading and embayment area. Fish community size structure, based on size spectra analysis, differed among embayments, with the frequency of smaller-bodied fishes positively related to percent vegetation. The importance of total phosphorus loading and vegetation in structuring fish communities has implications for anthropogenic impacts to embayment fish communities through activities such as farming and residential development, reduction of cultural eutrophication, and shoreline development and maintenance.

Connecting ground water influxes with fish species diversity in an urbanized watershed

USGS Publications Warehouse

Steffy, L.Y.; McGinty, A.L.; Welty, C.; Kilham, S.S.

2004-01-01

Valley Creek watershed is a small stream system that feeds the Schuylkill River near Philadelphia, Pennsylvania. The watershed is highly urbanized, including over 17 percent impervious surface cover (ISC) by area. Imperviousness in a watershed has been linked to fish community structure and integrity. Generally, above 10 to 12 percent ISC there is marked decline in fish assemblages with fish being absent above 25 percent ISC. This study quantifies the importance of ground water in maintaining fish species diversity in subbasins with over 30 percent ISC. Valley Creek contains an atypical fish assemblage in that the majority of the fish are warm-water species, and the stream supports naturally reproducing brown trout, which were introduced and stocked from the early 1900s to 1985. Fish communities were quantified at 13 stations throughout the watershed, and Simpson's species diversity index was calculated. One hundred and nine springs were located, and their flow rates measured. A cross covariance analysis between Simpson's species diversity index and spring flow rates upstream of fish stations was performed to quantify the spatial correlation between these two variables. The correlation was found to be highest at lag distances up to about 400 m and drop off significantly beyond lag distances of about 800 m.

Estimating current and future streamflow characteristics at ungaged sites, central and eastern Montana, with application to evaluating effects of climate change on fish populations

USGS Publications Warehouse

Sando, Roy; Chase, Katherine J.

2017-03-23

A common statistical procedure for estimating streamflow statistics at ungaged locations is to develop a relational model between streamflow and drainage basin characteristics at gaged locations using least squares regression analysis; however, least squares regression methods are parametric and make constraining assumptions about the data distribution. The random forest regression method provides an alternative nonparametric method for estimating streamflow characteristics at ungaged sites and requires that the data meet fewer statistical conditions than least squares regression methods.Random forest regression analysis was used to develop predictive models for 89 streamflow characteristics using Precipitation-Runoff Modeling System simulated streamflow data and drainage basin characteristics at 179 sites in central and eastern Montana. The predictive models were developed from streamflow data simulated for current (baseline, water years 1982–99) conditions and three future periods (water years 2021–38, 2046–63, and 2071–88) under three different climate-change scenarios. These predictive models were then used to predict streamflow characteristics for baseline conditions and three future periods at 1,707 fish sampling sites in central and eastern Montana. The average root mean square error for all predictive models was about 50 percent. When streamflow predictions at 23 fish sampling sites were compared to nearby locations with simulated data, the mean relative percent difference was about 43 percent. When predictions were compared to streamflow data recorded at 21 U.S. Geological Survey streamflow-gaging stations outside of the calibration basins, the average mean absolute percent error was about 73 percent.

Localization of the 5S and 45S rDNA Sites and cpDNA Sequence Analysis in Species of the Quadrifaria Group of Paspalum (Poaceae, Paniceae)

PubMed Central

VAIO, MAGDALENA; SPERANZA, PABLO; VALLS, JOSÉ FRANCISCO; GUERRA, MARCELO; MAZZELLA, CRISTINA

2005-01-01

• Background and Aims The Quadrifaria group of Paspalum (Poaceae, Paniceae) comprises species native to the subtropical and temperate regions of South America. The purpose of this research was to characterize the I genomes in five species of this group and to establish phylogenetic relationships among them. • Methods Prometaphase chromatin condensation patterns, the physical location of 5S and 45S rDNA sites by fluorescence in situ hybridization (FISH), and sequences of five chloroplast non-coding regions were analysed. • Key Results The condensation patterns observed were highly conserved among diploid and tetraploid accessions studied and not influenced by the dyes used or by the FISH procedure, allowing the identification of almost all the chromosome pairs that carried the rDNA signals. The FISH analysis of 5S rDNA sites showed the same localization and a correspondence between the number of sites and ploidy level. In contrast, the distribution of 45S rDNA sites was variable. Two general patterns were observed with respect to the location of the 45S rDNA. The species and cytotypes Paspalum haumanii 2x, P. intermedium 2x, P. quadrifarium 4x and P. exaltatum 4x showed proximal sites on chromosome 8 and two to four distal sites in other chromosomes, while P. quarinii 4x and P. quadrifarium 2x showed only distal sites located on a variable number of small chromosomes and on the long arm of chromosome 1. The single most-parsimonious tree found from the phylogenetic analysis showed the Quadrifaria species partitioned in two clades, one of them includes P. haumanii 2x and P. intermedium 2x together with P. quadrifarium 4x and P. exaltatum 4x, while the other contains P. quadrifarium 2x and P. quarinii 4x. • Conclusions The subdivision found with FISH is consistent with the clades recovered with cpDNA data and both analyses suggest that the Quadrifaria group, as presently defined, is not monophyletic and its species belong in at least two clades. PMID:15911540

Epidemiology of Ciguatera in Florida.

PubMed

Radke, Elizabeth G; Reich, Andrew; Morris, John Glenn

2015-08-01

Ciguatera is the most commonly reported marine food-borne illness worldwide. Because there is a biological plausibility that ciguatera may be impacted by long-term climate variability and Florida is on the northern border of the geographic distribution of ciguatera, it is important to update our understanding of its epidemiology in Florida. We performed an analysis of 291 reports in Florida from 2000 to 2011 and an e-mail survey of 5,352 recreational fishers to estimate incidence and underreporting and identify high risk demographic groups, fish types, and catch locations. Incidence was 5.6 per 100,000 adjusted for underreporting. Hispanics had the highest incidence rate (relative risk [RR] = 3.4) and were more likely to eat barracuda than non-Hispanics. The most common catch locations for ciguatera-causing fish were the Bahamas and Florida Keys. Cases caused by fish from northern Florida were infrequent. These results indicate that ciguatera incidence is higher than estimated from public health reports alone. There is little evidence that incidence or geographic range has increased because of increased seawater temperatures since earlier studies. © The American Society of Tropical Medicine and Hygiene.

Epidemiology of Ciguatera in Florida

PubMed Central

Radke, Elizabeth G.; Reich, Andrew; Morris, John Glenn

2015-01-01

Ciguatera is the most commonly reported marine food-borne illness worldwide. Because there is a biological plausibility that ciguatera may be impacted by long-term climate variability and Florida is on the northern border of the geographic distribution of ciguatera, it is important to update our understanding of its epidemiology in Florida. We performed an analysis of 291 reports in Florida from 2000 to 2011 and an e-mail survey of 5,352 recreational fishers to estimate incidence and underreporting and identify high risk demographic groups, fish types, and catch locations. Incidence was 5.6 per 100,000 adjusted for underreporting. Hispanics had the highest incidence rate (relative risk [RR] = 3.4) and were more likely to eat barracuda than non-Hispanics. The most common catch locations for ciguatera-causing fish were the Bahamas and Florida Keys. Cases caused by fish from northern Florida were infrequent. These results indicate that ciguatera incidence is higher than estimated from public health reports alone. There is little evidence that incidence or geographic range has increased because of increased seawater temperatures since earlier studies. PMID:26123957

Hg concentrations in fish from coastal waters of California and Western North America

USGS Publications Warehouse

Davis, Jay; Ross, John; Bezalel, Shira; Sim, Lawrence; Bonnema, Autumn; Ichikawa, Gary; Heim, Wes; Schiff, Kenneth C; Eagles-Smith, Collin A.; Ackerman, Joshua T.

2016-01-01

The State of California conducted an extensive and systematic survey of mercury (Hg) in fish from the California coast in 2009 and 2010. The California survey sampled 3483 fish representing 46 species at 68 locations, and demonstrated that methylHg in fish presents a widespread exposure risk to fish consumers. Most of the locations sampled (37 of 68) had a species with an average concentration above 0.3 μg/g wet weight (ww), and 10 locations an average above 1.0 μg/g ww. The recent and robust dataset from California provided a basis for a broader examination of spatial and temporal patterns in fish Hg in coastal waters of Western North America. There is a striking lack of data in publicly accessible databases on Hg and other contaminants in coastal fish. An assessment of the raw data from these databases suggested the presence of relatively high concentrations along the California coast and in Puget Sound, and relatively low concentrations along the coasts of Alaska and Oregon, and the outer coast of Washington. The dataset suggests that Hg concentrations of public health concern can be observed at any location on the coast of Western North America where long-lived predator species are sampled. Output from a linear mixed-effects model resembled the spatial pattern observed for the raw data and suggested, based on the limited dataset, a lack of trend in fish Hg over the nearly 30-year period covered by the dataset. Expanded and continued monitoring, accompanied by rigorous data management procedures, would be of great value in characterizing methylHg exposure, and tracking changes in contamination of coastal fish in response to possible increases in atmospheric Hg emissions in Asia, climate change, and terrestrial Hg control efforts in coastal watersheds.

Health risk assessment of heavy metals in fish and accumulation patterns in food web in the upper Yangtze River, China.

PubMed

Yi, Yujun; Tang, Caihong; Yi, Tieci; Yang, Zhifeng; Zhang, Shanghong

2017-11-01

This study aims to concern the distribution of As, Cr, Cd, Hg, Cu, Zn, Pb and Fe in surface sediment, zoobenthos and fishes, and quantify the accumulative ecological risk and human health risk of metals in river ecological system based on the field investigation in the upper Yangtze River. The results revealed high ecological risk of As, Cd, Cu, Hg, Zn and Pb in sediment. As and Cd in fish presented potential human health risk of metals by assessing integrated target hazard quotient results based on average and maximum concentrations, respectively. No detrimental health effects of heavy metals on humans were found by daily fish consumption. While, the total target hazard quotient (1.659) exceeding 1, it meant that the exposed population might experience noncarcinogenic health risks from the accumulative effect of metals. Ecological network analysis model was established to identify the transfer routes and quantify accumulative effects of metals on river ecosystem. Control analysis between compartments showed large predator fish firstly depended on the omnivorous fish. Accumulative ecological risk of metals indicated that zoobenthos had the largest metal propagation risk and compartments located at higher trophic levels were not easier affected by the external environment pollution. A potential accumulative ecological risk of heavy metal in the food web was quantified, and the noncarcinogenic health risk of fish consumption was revealed for the upper reach of the Yangtze River. Copyright © 2017 Elsevier Inc. All rights reserved.

Selective Preservation of Fossil Ghost Fish

NASA Astrophysics Data System (ADS)

Meacham, Amanda

2016-04-01

A unique type of fossil fish preservation has been discovered in the Angelo Member (Fossil Lake) of the Green River Formation. The Angelo Member is a predominately evaporative deposit dominated by dolomite, but contains facies of fossiliferous laminated calcimicrite. Fossil fish occurring in two beds conspicuously lack bones. Fish in the lower bed are only preserved as organic material, including skin, pigments, and eyes. Fish in the upper bed have three-dimensional etching where bones once existed but also contain skin, pigments, and eyes. The top third of the upper bed often contains calcite crystals that are pseudomorphs after trona and possibly halite. Preliminary mineralogical analysis and mapping of evaporate facies suggests that this unique preservation may be related to lake geochemical conditions, such as high pH and alkalinity. To our knowledge, this is the first time this type of preservation has been observed and studied. Fossils and sediments within these beds are being studied both vertically and laterally through the one-meter thick sequence containing the fossil fish using XRD, isotopic, SEM, thin section, and total organic carbon analysis. Nine quarries, 0.5-1 meter square, were excavated for both fossils and rock samples along with 17 additional rock sample locations across an approximately 25-kilometer square region. This investigation has the capability of reconstructing the paleoenvironment and lake chemistry of Fossil Lake during the deposition of the "ghost-fish" beds and solving the mystery of the "missing bones" and the unusual process of preservation.

Field Summary Report for Remedial Investigation of Hanford Site Releases to the Columbia River, Hanford Site, Washington

DOE Office of Scientific and Technical Information (OSTI.GOV)

L.C. Hulstrom

2010-09-28

This report documents field activity associated with the collection, preparation, and shipment of fish samples. The purpose of the report is to describe the sampling locations, identify samples collected, and describe any modifications and additions made to the sampling and analysis plan.

Seasonal changes in community composition and trophic structure of fish populations of five salt marshes along the Essex coastline, United Kingdom

NASA Astrophysics Data System (ADS)

Green, Benjamin C.; Smith, David J.; Earley, Sarah E.; Hepburn, Leanne J.; Underwood, Graham J. C.

2009-11-01

European intertidal salt marshes are important nursery sites for juvenile fish and crustaceans. Due to the increasing threat of habitat loss, the seasonal changes of salt marsh fish communities need to be understood in order to appreciate the ecological and economic importance of the saltmarsh habitat. This study was the first in Great Britain to investigate the seasonal changes of salt marsh fish communities and the variation in community structure between closely located marsh habitats. Between February 2007 and March 2008, five marshes on three estuaries of the Essex coastline were sampled using flume nets to block off intertidal creeks at high tide. Fourteen fish species were caught. The community overall was dominated by three species that made up 91.6% of the total catch: the common goby Pomatoschistus microps (46.2% of the total catch), juvenile herring Clupea harengus (24.3%), and juvenile and larval sea bass Dicentrarchus labrax (21.2%). Cluster analysis demonstrated clear seasonal patterns, with some community structures unique to specific marshes or estuaries. The marsh fish community shifts from a highly diverse community during spring, to a community dominated by D. labrax and P. microps in autumn, and low diversity during winter months. Gravimetric stomach content analysis of fish community identified three main trophic guilds; macroinvertivores, planktivores and omnivores. The macroinvertivore feeding guild contained D. labrax and P. microps, the two most frequently occurring species. This investigation demonstrates the importance of British salt marshes as nursery habitats for commercial fish species.

Clinical diagnosis and chemical confirmation of ciguatera fish poisoning in New South Wales, Australia.

PubMed

Farrell, Hazel; Zammit, Anthony; Manning, Jennifer; Shadbolt, Craig; Szabo, Lisa; Harwood, D Tim; McNabb, Paul; Turahui, John A; van den Berg, Debra J

2016-03-31

Ciguatera fish poisoning is common in tropical and sub-tropical areas and larger fish (> 10 kg) are more susceptible to toxin accumulation with age. Although the coastal climate of northern New South Wales is considered sub-tropical, prior to 2014 there has only been 1 documented outbreak of ciguatera fish poisoning from fish caught in the region. During February and March 2014, 2 outbreaks of ciguatera fish poisoning involved 4 and 9 individuals, respectively, both following consumption of Spanish mackerel from northern New South Wales coastal waters (Evans Head and Scotts Head). Affected individuals suffered a combination of gastrointestinal and neurological symptoms requiring hospital treatment. At least 1 individual was symptomatic up to 7 months later. Liquid chromatography-tandem mass spectrometry detected the compound Pacific ciguatoxin-1B at levels up to 1.0 µg kg(-1) in fish tissue from both outbreaks. During April 2015, another outbreak of ciguatera fish poisoning was reported in 4 individuals. The fish implicated in the outbreak was caught further south than the 2014 outbreaks (South West Rocks). Fish tissue was unavailable for analysis; however, symptoms were consistent with ciguatera fish poisoning. To our knowledge, these cases are the southernmost confirmed sources of ciguatera fish poisoning in Australia. Educational outreach to the fishing community, in particular recreational fishers was undertaken after the Evans Head outbreak. This highlighted the outbreak, species of fish involved and the range of symptoms associated with ciguatera fish poisoning. Further assessment of the potential for ciguatoxins to occur in previously unaffected locations need to be considered in terms of food safety.

Control of respiration in fish, amphibians and reptiles.

PubMed

Taylor, E W; Leite, C A C; McKenzie, D J; Wang, T

2010-05-01

Fish and amphibians utilise a suction/force pump to ventilate gills or lungs, with the respiratory muscles innervated by cranial nerves, while reptiles have a thoracic, aspiratory pump innervated by spinal nerves. However, fish can recruit a hypobranchial pump for active jaw occlusion during hypoxia, using feeding muscles innervated by anterior spinal nerves. This same pump is used to ventilate the air-breathing organ in air-breathing fishes. Some reptiles retain a buccal force pump for use during hypoxia or exercise. All vertebrates have respiratory rhythm generators (RRG) located in the brainstem. In cyclostomes and possibly jawed fishes, this may comprise elements of the trigeminal nucleus, though in the latter group RRG neurons have been located in the reticular formation. In air-breathing fishes and amphibians, there may be separate RRG for gill and lung ventilation. There is some evidence for multiple RRG in reptiles. Both amphibians and reptiles show episodic breathing patterns that may be centrally generated, though they do respond to changes in oxygen supply. Fish and larval amphibians have chemoreceptors sensitive to oxygen partial pressure located on the gills. Hypoxia induces increased ventilation and a reflex bradycardia and may trigger aquatic surface respiration or air-breathing, though these latter activities also respond to behavioural cues. Adult amphibians and reptiles have peripheral chemoreceptors located on the carotid arteries and central chemoreceptors sensitive to blood carbon dioxide levels. Lung perfusion may be regulated by cardiac shunting and lung ventilation stimulates lung stretch receptors.

Hance_WFSR flasher locations

EPA Pesticide Factsheets

This entry contains two files. The first file, Hance_WFSR Flasher locations.xlxs, contains information describing the location of installed landmark 'flashers' consisting of 2 square aluminum metal tags. Each tag was inscribed with a number to aid field personnel in the identification of landmark location within the West Fork Smith River watershed in southern coastal Oregon. These landmarks were used to calculate stream distances between points in the watershed, including distances between tagging locations and detection events for tagged fish. A second file, named Hance_fish_detection_data1.xlxs contains information on the detection of tagged fish within the West Fork Smith River stream network. The file includes both the location where the fish were tagged and where they were subsequently detected. Together with the information in the WFSR flasher location dataset, these data allow estimation of the minimum distances and directions moved by juvenile coho salmon during the fall transition period.A map locator is provided in Figure 1 in the accompanying manuscript: Dalton J. Hance, Lisa M. Ganio, Kelly M. Burnett & Joseph L. Ebersole (2016) Basin-Scale Variation in the Spatial Pattern of Fall Movement of Juvenile Coho Salmon in the West Fork Smith River, Oregon, Transactions of the American Fisheries Society, 145:5, 1018-1034, DOI: 10.1080/00028487.2016.1194892This dataset is associated with the following publication:Hance, D.J., L.M. Ganio, K.M. Burnett, an

Characterization of the quality of water, bed sediment, and fish in Mittry Lake, Arizona, 2014–15

USGS Publications Warehouse

Hermosillo, Edyth; Coes, Alissa L.

2017-03-01

Water, bed-sediment, and fish sampling was conducted in Mittry Lake, Arizona, in 2014–15 to establish current water-quality conditions of the lake. The parameters of temperature, dissolved-oxygen concentration, specific conductance, and alkalinity were measured in the field. Water samples were collected and analyzed for dissolved major ions, dissolved trace elements, dissolved nutrients, dissolved organic carbon, dissolved pesticides, bacteria, and suspended-sediment concentrations. Bed-sediment and fish samples were analyzed for trace elements, halogenated compounds, total mercury, and methylmercury.U.S. Environmental Protection Agency secondary maximum contaminant levels in drinking water were exceeded for sulfate, chloride, and manganese in the water samples. Trace-element concentrations were relatively similar between the inlet, middle, and outlet locations. Concentrations for nutrients in all water samples were below the Arizona Department of Environmental Quality’s water-quality standards for aquatic and wildlife uses, and all bacteria levels were below the Arizona Department of Environmental Quality’s recommended recreational water-quality criteria. Three out of 81 pesticides were detected in the water samples.Trace-element concentrations in bed sediment were relatively consistent between the inlet, middle, and outlet locations. Lead, manganese, nickel, and zinc concentrations, however, decreased from the inlet to outlet locations. Concentrations for lead, nickel, and zinc in some bed-sediment samples exceeded consensus-based sediment-quality guidelines probable effect concentrations. Eleven out of 61 halogenated compounds were detected in bed sediment at the inlet location, whereas three were detected at the middle location, and five were detected at the outlet location. No methylmercury was detected in bed sediment. Total mercury was detected in bed sediment at concentrations below the consensus-based sediment-quality guidelines probable effect concentration.Sixteen trace elements were detected in at least one of the fish-tissue samples, and trace-element concentrations were relatively consistent between the three fish-tissue samples. Seven halogenated compounds were detected in at least one of the whole-body fish samples; four to five compounds were detected in each fish. One fish-tissue sample exceeded the U.S. Environmental Protection Agency human health consumption criteria for methylmercury.

Structural characterization and evolutionary analysis of fish-specific TLR27.

PubMed

Wang, Jinlan; Zhang, Zheng; Liu, Jing; Li, Fang; Chang, Fen; Fu, Hui; Zhao, Jing; Yin, Deling

2015-08-01

Toll-like receptors (TLRs) are critical components of the innate immune response of fish. In a phylogenetic analysis, TLR27 from three fish species, which belongs to TLR family 1, clustered with TLR14/18 and TLR25 on the evolutionary tree. The ectodomain of TLR27 is predicted to include 19 leucine-rich repeat (LRR) modules. Structural modeling showed that the TLR27 ectodomain can be divided into three distinctive sections. The lack of conserved asparagines on the concave surface of the central subdomain causes a structural transition in the middle of the ectodomain, forming a distinct hydrophobic pocket at the border between the central subdomain and the C-terminal subdomain. We infer that, like other functionally characterized TLRs in family 1, the hydrophobic pocket located between LRR11 and LRR12 participates in ligand recognition by TLR27. An evolutionary analysis showed that the dN/dS value at the TLR27 locus was very low. Approximately one quarter of the total number of TLR27 sites are under significant negatively selection pressure, whereas only two sites are under positive selection. Consequently, TLR27 is highly evolutionarily conserved and probably plays an extremely important role in the innate immune systems of fishes. Copyright © 2015 Elsevier Ltd. All rights reserved.

Granulometric analysis at Lampulo Fishing Port (LFP) substrate, Banda Aceh, Indonesia

NASA Astrophysics Data System (ADS)

Purnawan, S.; Setiawan, I.; Haridhi, H. A.; Irham, M.

2018-01-01

The study of sediment granulometry was completed at Lampulo fishing port (LFP). The LFP is a main fishing port in Aceh Province, Indonesia, located at 5°34’35” N; 95°19’23” E. The purpose of the research is to study and construct the environment condition of the bottom substrate. The data was taken by incorporating coring method at 10 stations using purposive random sampling. The wet sieve method was used to analyze the grain size for geostatistical analysis. The geostatistical parameters analysis in this study is classified as mean, sorting, skewness and kurtosis. The result informs that the types of sediments are sand, sandy clay and clayey sand for all stations. Station 1, however, is found as the coarsest compares to the other stations. All of the sediment collected at each station displays moderately sorted to poor sorted, while kurtosis values may be categorized as very leptokurtic. The results of the sediment parameters indicate that the environment of harbor pool was in a stable state, related to a sheltered condition.

Mercury levels of marine fish commonly consumed in Peninsular Malaysia.

PubMed

Ahmad, Nurul Izzah; Noh, Mohd Fairulnizal Mohd; Mahiyuddin, Wan Rozita Wan; Jaafar, Hamdan; Ishak, Ismail; Azmi, Wan Nurul Farah Wan; Veloo, Yuvaneswary; Hairi, Mohd Hairulhisam

2015-03-01

This study was conducted to determine the concentration of total mercury in the edible portion of 46 species of marine fish (n = 297) collected from selected major fish landing ports and wholesale markets throughout Peninsular Malaysia. Samples were collected in June to December 2009. Prior to analysis, the fish samples were processed which consisted of drying at 65 °C until a constant weight was attained; then, it was grounded and digested by a microwave digestion system. The analytical determination was carried out by using a mercury analysis system. Total mercury concentration among fish species was examined. The results showed that mercury concentrations were found significantly higher (p < 0.001) in demersal fish (the range was from 0.173 to 2.537 mg/kg in dried weight) compared to pelagic fish (which ranged from 0.055 to 2.137 mg/kg in dried weight). The mercury concentrations were also higher in carnivorous fish especially in the species with more predatory feeding habits. Besides, the family group of Latidae (0.537 ± 0.267 mg/kg in dried weight), Dasyatidae (0.492 ± 0.740 mg/kg in dried weight), and Lutjanidae (0.465 ± 0.566 mg/kg in dried weight) showed significantly (p < 0.001) higher mercury levels compared to other groups. Fish collected from Port Klang (0.563 ± 0.509 mg/kg in dry weight), Kuala Besar (0.521 ± 0.415 mg/kg in dry weight), and Pandan (0.380 ± 0.481 mg/kg in dry weight) were significantly higher (p = 0.014) in mercury concentrations when compared to fish from other sampling locations. Total mercury levels were significantly higher (p < 0.002) in bigger fish (body length >20 cm) and were positively related with fish size (length and weight) in all fish samples. Despite the results, the level of mercury in marine fish did not exceed the permitted levels of Malaysian and JECFA guideline values at 0.5 mg/kg methylmercury in fish.

Network analysis of a regional fishery: Implications for management of natural resources, and recruitment and retention of anglers

USGS Publications Warehouse

Martin, Dustin R.; Shizuka, Daizaburo; Chizinski, Christopher J.; Pope, Kevin L.

2017-01-01

Angler groups and water-body types interact to create a complex social-ecological system. Network analysis could inform detailed mechanistic models on, and provide managers better information about, basic patterns of fishing activity. Differences in behavior and reservoir selection among angler groups in a regional fishery, the Salt Valley fishery in southeastern Nebraska, USA, were assessed using a combination of cluster and network analyses. The four angler groups assessed ranged from less active, unskilled anglers (group One) to highly active, very skilled anglers (group Four). Reservoir use patterns and the resulting network communities of these four angler groups differed; the number of reservoir communities for these groups ranged from two to three and appeared to be driven by reservoir location (group One), reservoir size and its associated attributes (groups Two and Four), or an interaction between reservoir size and location (group Three). Network analysis is a useful tool to describe differences in participation among angler groups within a regional fishery, and provides new insights about possible recruitment of anglers. For example, group One anglers fished reservoirs closer to home and had a greater probability of dropping out if local reservoir access were restricted.

Investigating fish hydraulic habitat preferences using a passive integrated transponder antenna network: Scope on spatial scales and individual mobility

NASA Astrophysics Data System (ADS)

Roy, M. L.; Roy, A. G.

2009-12-01

Flow velocity is a major feature of fluvial fish habitat. It affects swimming energy expenditures, resource distribution and efficiency of prey capture, thus exerting a major influence on fish distribution. Preferences of juvenile salmonids for ranges of flow velocity are well documented. Preference curves are usually generated by comparing velocities measured at the precise location of captured fish (nose velocity) with velocities measured at random locations where fish are absent. However, these preferences tend to be specific to sites and rivers and show important variability with time. Recent biotelemetry studies have revealed that juvenile salmonids are more mobile than previously assumed and use larger home ranges and multiple micro-habitats. Therefore, fish might select habitats based on the characteristics of a microhabitat, but also based on the properties of the surrounding area. Furthermore, mobile fish could present temporal variability in their habitat preferences. Recent advances in biotelemetry provide new ways to monitor fish locations and to obtain habitat preferences both at the individual and the population levels at high temporal and spatial resolutions for extended periods. In this study, we seek to identify the most relevant spatial scales defining habitat preferences of juvenile Atlantic salmon. We emphasize both the group and individual temporal variability in hydraulic habitat preferences. During a three month period, we monitored the location and movements of 61 juveniles marked with 23-mm passive integrated transponders (PIT) using a network of 186 antennas buried into the bed of a natural river reach in Saguenay, Canada. Each antenna was scanned every 33 seconds to detect and record the presence or absence of tagged fish. The reach was 70 m long and 9 m wide on average and presented a very clear morphological sequence consisting of two pools separated by a riffle. Mean flow velocity and turbulent flow properties were measured at 3500 velocity locations across the reach with ADVs on a regular grid at 10 cm above the bed at low flow. We examined fish preferences at the microhabitat scale (nose velocity), at the feeding habitat scale (1.5 X 1.5 m), at a scale of surrounding feeding habitats (2.5 X 2.5 m) and at a scale of morphological units (pools and riffles). Over the study period, the antenna grid generated 106208 detections. Fish monitoring revealed a variability of spatial behaviors among individuals, some fish showing strong attachment to a small number of adjacent micro-habitats whereas others used a large number of micro-habitats located far apart, in both pools and riffles. Juvenile salmon exhibited preferences for medium to high velocity micro-habitats. However, fish presented hydraulic habitat preferences occurring at the scale of flow patches (≈ 6 m2). Furthermore, juvenile Atlantic salmon also showed an active habitat selection dynamics, where temporal individual preference curves for several hours were similar to that of the entire group of fish for a short time period. These observations highlight the importance of patch scale habitat features which provide valuable information for fish management.

Fish communities in coastal freshwater ecosystems: the role of the physical and chemical setting

PubMed Central

Arend, Kristin K; Bain, Mark B

2008-01-01

Background We explored how embayment watershed inputs, morphometry, and hydrology influence fish community structure among eight embayments located along the southeastern shoreline of Lake Ontario, New York, USA. Embayments differed in surface area and depth, varied in their connections to Lake Ontario and their watersheds, and drained watersheds representing a gradient of agricultural to forested land use. Results We related various physicochemical factors, including total phosphorus load, embayment area, and submerged vegetation, to differences in fish species diversity and community relative abundance, biomass, and size structure both among and within embayments. Yellow perch (Perca flavescens) and centrarchids numerically dominated most embayment fish communities. Biomass was dominated by piscivorous fishes including brown bullhead (Ameiurus nebulosus), bowfin (Amia calva), and northern pike (Esox lucius). Phosphorus loading influenced relative biomass, but not species diversity or relative abundance. Fish relative abundance differed among embayments; within embayments, fish abundance at individual sampling stations increased significantly with submerged vegetative cover. Relative biomass differed among embayments and was positively related to total phophorus loading and embayment area. Fish community size structure, based on size spectra analysis, differed among embayments, with the frequency of smaller-bodied fishes positively related to percent vegetation. Conclusion The importance of total phosphorus loading and vegetation in structuring fish communities has implications for anthropogenic impacts to embayment fish communities through activities such as farming and residential development, reduction of cultural eutrophication, and shoreline development and maintenance. PMID:19114002

Genotoxicity of Water Contaminants from the Basin of Lake Sevan, Armenia Evaluated by the Comet Assay in Gibel Carp (Carassius auratus gibelio) and Tradescantia Bioassays.

PubMed

Simonyan, Anna; Gabrielyan, Barduch; Minasyan, Seyran; Hovhannisyan, Galina; Aroutiounian, Rouben

2016-03-01

Combination of bioassays and chemical analysis was applied to determine the genotoxic/mutagenic contamination in four different sites of the basin of Lake Sevan in Armenia. Water genotoxicity was evaluated using the single cell gel electrophoresis technique (comet assay) in erythrocytes of gibel carp (Carassius auratus gibelio), Tradescantia micronucleus (Trad-MCN) and Tradescantia stamen hair mutation (Trad-SHM) assays. Significant inter-site differences in the levels of water genotoxicity according to fish and Trad-MCN bioassays have been revealed. Two groups of locations with lower (south-southwest of the village Shorzha and Peninsula of Lake Sevan) and higher (estuaries of Gavaraget and Dzknaget rivers) levels of water genotoxicity were distinguished. Correlation analysis support the hypothesis that the observed genetic alterations in fish and plant may be a manifestation of the effects of water contamination by nitrate ions, Si, Al, Fe, Mn and Cu. Increase of DNA damage in fish also correlated with content of total phosphorus.

Columbia River White Sturgeon (Acipenser Transmontanus) Early Life History and Genertics Study, August 1, 1984 to December 31, 1985 Final Report.

DOE Office of Scientific and Technical Information (OSTI.GOV)

Brannon, Ernest L.

1985-12-01

Research on Columbia River white sturgeon has been directed at their early life history as it may apply to production and enhancement strategies for management of the species. The river environment in which sturgeon historically migrated, spawned, and reared has changed through development. Habitat changes are expected to precipitate genetic changes in the fish, as well as reduce the fitness in populations. Genetic analysis of samples taken from various locations over the length of the Columbia River have indicated that observed gene frequencies in all areas sampled were not in Hardy-Weinburg equilibrium, which could suggest that the general population ismore » experiencing perturbation in the system. Analysis thus far has exposed few differences between samples from the lower, middle, and upper portions of the system. Allelic differences were identified in fish from the Roosevelt Lake, which may be evidence of unique characteristics among fish from that general area.« less

Fish assemblages of the Casiquiare River, a corridor and zoogeographical filter for dispersal between the Orinoco and Amazon basins

USGS Publications Warehouse

Winemiller, K.O.; Lopez-Fernandez, H.; Taphorn, D.C.; Nico, L.G.; Duque, A.B.

2008-01-01

Aim: The aim of this study was to determine whether the Casiquiare River functions as a free dispersal corridor or as a partial barrier (i.e. filter) for the interchange of fish species of the Orinoco and Negro/Amazon basins using species assemblage patterns according to geographical location and environmental features. Location: The Casiquiare, Upper Orinoco and Upper Negro rivers in southern Venezuela, South America. Methods: Our study was based on an analysis of species presence/absence data and environmental information (11 habitat characteristics) collected by the authors and colleagues between the years 1984 and 1999. The data set consisted of 269 sampled sites and 452 fish species (> 50,000 specimens). A wide range of habitat types was included in the samples, and the collection sites were located at various points along the entire length of the Casiquiare main channel, at multiple sites on its tributary streams, as well as at various nearby sites outside the Casiquiare drainage, within the Upper Orinoco and Upper Rio Negro river systems. Most specimens and field data used in this analysis are archived in the Museo de Ciencias Naturales in Guanare, Venezuela. We performed canonical correspondence analysis (CCA) based on species presence/absence using two versions of the data set: one that eliminated sites having < 5 species and species occurring at < 5 sites; and another that eliminated sites having < 10 species and species occurring at < 10 sites. Cluster analysis was performed on sites based on species assemblage similarity, and a separate analysis was performed on species based on CCA loadings. Results: The CCA results for the two versions of the data set were qualitatively the same. The dominant environmental axis contrasted assemblages and sites associated with blackwater vs. clearwater conditions. Longitudinal position on the Casiquiare River was correlated (r2 = 0.33) with CCA axis-1 scores, reflecting clearwater conditions nearer to its origin (bifurcation of the Orinoco) and blackwater conditions nearer to its mouth (junction with the Rio Negro). The second CCA axis was most strongly associated with habitat size and structural complexity. Species associations derived from the unweighted pair-group average clustering method and pair-wise squared Euclidean distances calculated from species loadings on CCA axes 1 and 2 showed seven ecological groupings. Cluster analysis of species assemblages according to watershed revealed a stronger influence of local environmental conditions than of geographical proximity. Main conclusions: Fish assemblage composition is more consistently associated with local environmental conditions than with geographical position within the river drainages. Nonetheless, the results support the hypothesis that the mainstem Casiquiare represents a hydrochemical gradient between clearwaters at its origin and blackwaters at its mouth, and as such appears to function as a semi-permeable barrier (environmental filter) to dispersal and faunal exchanges between the partially vicariant fish faunas of the Upper Orinoco and Upper Negro rivers. ?? 2008 The Authors.

The Electric Field of a Weakly Electric Fish

NASA Astrophysics Data System (ADS)

Rasnow, Brian K.

Freshwater fish of the genus Apteronotus (family Gymnotidae) generate a weak, high frequency electric field (<100 mV/cm, 0.5-10 kHz) which permeates their local environment. These nocturnal fish are acutely sensitive to perturbations in their electric field caused by other electric fish, and nearby objects whose impedance is different from the surrounding water. This thesis presents high temporal and spatial resolution maps of the electric potential and field on and near Apteronotus. The fish's electric field is a complicated and highly stable function of space and time. Its characteristics, such as spectral composition, timing, and rate of attenuation, are examined in terms of physical constraints, and their possible functional roles in electroreception. Temporal jitter of the periodic field is less than 1 musec. However, electrocyte activity is not globally synchronous along the fish's electric organ. The propagation of electrocyte activation down the fish's body produces a rotation of the electric field vector in the caudal part of the fish. This may assist the fish in identifying nonsymmetrical objects, and could also confuse electrosensory predators that try to locate Apteronotus by following its fieldlines. The propagation also results in a complex spatiotemporal pattern of the EOD potential near the fish. Visualizing the potential on the same and different fish over timescales of several months suggests that it is stable and could serve as a unique signature for individual fish. Measurements of the electric field were used to calculate the effects of simple objects on the fish's electric field. The shape of the perturbation or "electric image" on the fish's skin is relatively independent of a simple object's size, conductivity, and rostrocaudal location, and therefore could unambiguously determine object distance. The range of electrolocation may depend on both the size of objects and their rostrocaudal location. Only objects with very large dielectric constants cause appreciable phase shifts, and these are strongly dependent on the water conductivity.

Quantitative Microbial Community Analysis of Three Different Sulfidic Mine Tailing Dumps Generating Acid Mine Drainage▿

PubMed Central

Kock, Dagmar; Schippers, Axel

2008-01-01

The microbial communities of three different sulfidic and acidic mine waste tailing dumps located in Botswana, Germany, and Sweden were quantitatively analyzed using quantitative real-time PCR (Q-PCR), fluorescence in situ hybridization (FISH), catalyzed reporter deposition-FISH (CARD-FISH), Sybr green II direct counting, and the most probable number (MPN) cultivation technique. Depth profiles of cell numbers showed that the compositions of the microbial communities are greatly different at the three sites and also strongly varied between zones of oxidized and unoxidized tailings. Maximum cell numbers of up to 109 cells g−1 dry weight were determined in the pyrite or pyrrhotite oxidation zones, whereas cell numbers in unoxidized tailings were significantly lower. Bacteria dominated over Archaea and Eukarya at all tailing sites. The acidophilic Fe(II)- and/or sulfur-oxidizing Acidithiobacillus spp. dominated over the acidophilic Fe(II)-oxidizing Leptospirillum spp. among the Bacteria at two sites. The two genera were equally abundant at the third site. The acidophilic Fe(II)- and sulfur-oxidizing Sulfobacillus spp. were generally less abundant. The acidophilic Fe(III)-reducing Acidiphilium spp. could be found at only one site. The neutrophilic Fe(III)-reducing Geobacteraceae as well as the dsrA gene of sulfate reducers were quantifiable at all three sites. FISH analysis provided reliable data only for tailing zones with high microbial activity, whereas CARD-FISH, Q-PCR, Sybr green II staining, and MPN were suitable methods for a quantitative microbial community analysis of tailings in general. PMID:18586975

No evidence of decreased risk of colorectal adenomas with white meat, poultry, and fish intake: a meta-analysis of observational studies.

PubMed

Xu, Bin; Sun, Jing; Sun, Yunwei; Huang, Liya; Tang, Yuming; Yuan, Yaozong

2013-04-01

Observational studies on the association between white meat (including fish and poultry) intake and the risk of colorectal adenoma (CRA), the precursor of colorectal cancer, have reported mixed results. To provide a quantitative assessment of this association, we summarized the evidence from observational studies. Relevant studies published on or before April 30, 2012 were identified from MEDLINE and EMBASE. Summary effect size estimates with 95% confidence intervals (CIs) were calculated with a random-effects model. Between-study heterogeneity was assessed using the Cochran Q and I(2) statistics. A total of 23 publications from 21 independent studies (16 case-control and 5 cohort studies) were included in this meta-analysis. Based on high versus low analysis, the summary effect size estimate of CRA was 0.96 (95% CI, 0.84-1.09) for white meat intake, 0.98 (95% CI, 0.80-1.19) for fish intake, and 0.98 (95% CI, 0.80-1.18) for poultry intake. Subgroup analyses revealed that the null associations of CRA with intake of white meat (fish/poultry) were independent of geographic locations, study design, type of food frequency questionnaire, number of cases, and adjustments for confounders, such as body mass index, use of nonsteroidal anti-inflammatory drugs, dietary energy intake, smoking, and physical activity. Intake of white meat (fish/poultry) is not associated with the risk of CRA. Copyright © 2013 Elsevier Inc. All rights reserved.

Computerized analysis of cytology and fluorescence in situ hybridization (FISH) in induced sputum for lung cancer detection.

PubMed

Guber, Alexander; Greif, Joel; Rona, Roni; Fireman, Elizabeth; Madi, Lea; Kaplan, Tal; Yemini, Zipi; Gottfried, Maya; Katz, Ruth L; Daniely, Michal

2010-10-25

Lung cancer results from a multistep process, whereby genetic and epigenetic alterations lead to a malignant phenotype. Somatic mutations, deletions, and amplifications can be detected in the tumor itself, but they can also be found in histologically normal bronchial epithelium as a result of field cancerization. The present feasibility study describes a computer-assisted analysis of induced sputum employing morphology and fluorescence in situ hybridization (target-FISH), using 2 biomarkers located at chromosomes 3p22.1 and 10q22.3. Induced sputum samples were collected using a standardized protocol from 12 patients with lung cancer and from 15 healthy, nonsmoking controls. We used an automated scanning system that allows consecutive scans of morphology and FISH of the same slide. Cells derived for the lower airways were analyzed for the presence of genetic alterations in the 3p22.1 and 10q22.3 loci. The cutoff for a positive diagnosis was defined as >4% of cells showing genetic alterations. Eleven of 12 lung cancer patients and 12 of 15 controls were identified correctly, giving an overall sensitivity and specificity of 91.66% and 80%, respectively. This study describes a new technology for detecting lung cancer noninvasively in induced sputum via a combination of morphology and FISH analysis (target-FISH) using computer-assisted technology. This approach may potentially be utilized for mass screening of high-risk populations. © 2010 American Cancer Society.

Quantitative microbial community analysis of three different sulfidic mine tailing dumps generating acid mine drainage.

PubMed

Kock, Dagmar; Schippers, Axel

2008-08-01

The microbial communities of three different sulfidic and acidic mine waste tailing dumps located in Botswana, Germany, and Sweden were quantitatively analyzed using quantitative real-time PCR (Q-PCR), fluorescence in situ hybridization (FISH), catalyzed reporter deposition-FISH (CARD-FISH), Sybr green II direct counting, and the most probable number (MPN) cultivation technique. Depth profiles of cell numbers showed that the compositions of the microbial communities are greatly different at the three sites and also strongly varied between zones of oxidized and unoxidized tailings. Maximum cell numbers of up to 10(9) cells g(-1) dry weight were determined in the pyrite or pyrrhotite oxidation zones, whereas cell numbers in unoxidized tailings were significantly lower. Bacteria dominated over Archaea and Eukarya at all tailing sites. The acidophilic Fe(II)- and/or sulfur-oxidizing Acidithiobacillus spp. dominated over the acidophilic Fe(II)-oxidizing Leptospirillum spp. among the Bacteria at two sites. The two genera were equally abundant at the third site. The acidophilic Fe(II)- and sulfur-oxidizing Sulfobacillus spp. were generally less abundant. The acidophilic Fe(III)-reducing Acidiphilium spp. could be found at only one site. The neutrophilic Fe(III)-reducing Geobacteraceae as well as the dsrA gene of sulfate reducers were quantifiable at all three sites. FISH analysis provided reliable data only for tailing zones with high microbial activity, whereas CARD-FISH, Q-PCR, Sybr green II staining, and MPN were suitable methods for a quantitative microbial community analysis of tailings in general.

Variation in size frequency distribution of coral populations under different fishing pressures in two contrasting locations in the Indian Ocean.

PubMed

Grimsditch, G; Pisapia, C; Huck, M; Karisa, J; Obura, D; Sweet, M

2017-10-01

This study aimed to assess how the size-frequency distributions of coral genera varied between reefs under different fishing pressures in two contrasting Indian Ocean locations (the Maldives and East Africa). Using generalized linear mixed models, we were able to demonstrate that complex interactions occurred between coral genera, coral size class and fishing pressure. In both locations, we found Acropora coral species to be more abundant in non-fished compared to fished sites (a pattern which was consistent for nearly all the assessed size classes). Coral genera classified as 'stress tolerant' showed a contrasting pattern i.e. were higher in abundance in fished compared to non-fished sites. Site specific variations were also observed. For example, Maldivian reefs exhibited a significantly higher abundance in all size classes of 'competitive' corals compared to East Africa. This possibly indicates that East African reefs have already been subjected to higher levels of stress and are therefore less suitable environments for 'competitive' corals. This study also highlights the potential structure and composition of reefs under future degradation scenarios, for example with a loss of Acropora corals and an increase in dominance of 'stress tolerant' and 'generalist' coral genera. Copyright © 2017. Published by Elsevier Ltd.

Stocking of Offsite Waters for Hungry Horse Dam Mitigation; Creston National Fish Hatchery, 2001-2002 Annual Report.

DOE Office of Scientific and Technical Information (OSTI.GOV)

Maskill, Mark

2003-03-01

Mitigation Objective 1: Produce Native Westslope Cutthroat Trout at Creston NFH--Task: Acquire eggs and rear up to 100,000 Westslope Cutthroat trout annually for offsite mitigation stocking. Accomplishments: A total of 150,000 westslope cutthroat eggs (M012 strain) were acquired from the State of Montana Washoe Park State Fish Hatchery in July 2001 for this objective. Another 120,000 westslope cutthroat eggs were taken from feral fish at Rogers Lake in May of 2001 by the Creston Hatchery crew. The fish were reared using approved fish culture techniques as defined in the U.S. Department of the Interior Fish Hatchery Management guidelines. Post releasemore » survival and angler success is monitored annually by Montana Fish Wildlife and Parks (MFWP) and the Confederated Salish and Kootenai Tribe (CSKT). Stocking numbers and locations may vary yearly based on results of biological monitoring. Mitigation Objective 2: Produce Rainbow Trout at Creston NFH--Task: Acquire and rear up to 100,000 Rainbow trout annually for offsite mitigation in closed basin waters. Accomplishments: A total of 50,500 rainbow trout eggs (Arlee strain) were acquired from the State of Montana Arlee State Fish Hatchery in December 2001 for this objective. The fish were reared using approved fish culture techniques as defined in the U.S. Department of the Interior Fish Hatchery Management guidelines. Arlee rainbow trout are being used for this objective because the stocking locations are terminal basin reservoirs and habitat conditions and returns to creel are unsuitable for native cutthroat. Post release survival and angler success is monitored annually by the Confederated Salish and Kootenai Tribe (CSKT). Stocking numbers and locations may vary yearly based on results of biological monitoring.« less

Morphological and molecular characterization of a marine fish trypanosome from South Africa, including its development in a leech vector

PubMed Central

2014-01-01

Background Trypanosomes are ubiquitous blood parasites of marine and freshwater fishes, typically transmitted by aquatic leeches. Phylogenetic studies have been dominated by examples derived from freshwater fishes, with few marine representatives. Furthermore, life cycle studies on marine fish trypanosomes have focused on those of the northern hemisphere. In this investigation, we have examined the life cycle and molecular taxonomy of a marine fish trypanosome from South Africa. Methods To locate trypanosome stages, leeches were removed from fishes captured on the west and south coasts of South Africa, and fish blood films and leech squashes were Giemsa-stained and screened; leeches were also examined histologically. To determine whether trypanosome stages in fishes and leeches were of the same genotype, DNA was extracted from Giemsa-stained fish blood films and leech squashes, and from fish whole blood. Fragments of the 18S rRNA gene were amplified by PCR using trypanosome-specific primers and sequenced. Resulting sequence data were compared with each other and with published trypanosome 18S rDNA sequences, and used for phylogenetic analysis. Results Trypanosomes were detected in blood films from fishes of the families Clinidae, Blenniidae and Gobiidae. The flagellates ranged in size and staining properties within the films and across fish hosts. In squashes and histological sections of adult and juvenile leeches, identified as Zeylanicobdella arugamensis, trypanosome developmental stages were predominantly slender epimastigotes. Sequence data showed that trypanosomes derived from fishes were identical, irrespective of whether they were small or large forms; sequences derived largely from leech epimastigotes were also identical to those obtained from fish trypanosomes. Fish and leech trypanosome sequences fell into a marine fish aquatic clade, and aligned most closely with two trypanosome sequences from marine fishes off Norway. Conclusions Combined morphological and molecular methods indicate that the trypanosomes examined here represent a single pleomorphic species, rather than the three species described originally. This species is identified as Trypanosoma nudigobii Fantham, 1919 with the leech Z. arugamensis as its vector, and T. capigobii Fantham, 1919 and T. blenniclini Fantham, 1930 are regarded as junior synonyms of the species. Phylogenetic analysis establishes its affinity with marine fish trypanosomes off Norway. PMID:24460725

Estimating clandestine activities from partially observed processes: illegal transhipment of fish catches among vessels

NASA Astrophysics Data System (ADS)

Wilcox, C.; Ford, J.

2016-12-01

Crimes involving fishers impose significant costs on fisheries, managers and national governments. These crimes also lead to unsustainable harvesting practices, as they undermine both knowledge of the status of fisheries stocks and limits on their harvesting. One of the greatest contributors to fisheries crimes globally is transfer of fish catch among vessels, otherwise known as transshipment. While legal transshipment provides economic advantages to vessels by increasing their efficiency, illegal transshipment can allow them to avoid regulations, catch prohibited species, and fish with impunity in prohibited locations such as waters of foreign countries. Despite the presence of a number of monitoring technologies for tracking fishing vessels, transshipment is frequently done clandestinely. Here we present a statistical model for transshipment in a Southeast Asian tuna fishery. We utilize both spatial and temporal information on vessel movement patterns in a statistical model to infer unobserved transshipment events among vessels. We provide a risk analysis framework for forecasting likely transshipment events, based on our analysis of vessel movement patterns. The tools we present are widely applicable to a variety of fisheries and types of tracking data, allowing managers to more effectively screen the large volume of data tracking systems create and quickly identify suspicious behavior.

76 FR 16613 - Magnuson-Stevens Act Provisions; General Provisions for Domestic Fisheries; Application for...

Federal Register 2010, 2011, 2012, 2013, 2014

2011-03-24

... probes would be recorded by collaborating fishermen, along with information on location, depth fished... probes to gain information about fish distribution. Compensation fishing for this research would occur...

Distribution and abundance of juvenile demersal fishes in relation to summer hypoxia and other environmental variables in coastal Oregon, USA

NASA Astrophysics Data System (ADS)

Sobocinski, Kathryn L.; Ciannelli, Lorenzo; Wakefield, W. Waldo; Yergey, Matthew E.; Johnson-Colegrove, Angela

2018-05-01

The juvenile demersal fish assemblage along the Pacific Northwest coast has received little attention relative to adult life history stages since pioneering work in the 1970s. Increasing severity of hypoxia along the Oregon coast in recent years has prompted investigations into the response of biota in this region. We used summer data (2008-2013) from a beam trawl survey targeting juvenile demersal fishes in soft-bottom habitats along the Oregon coast to describe patterns of distribution and abundance at fixed sampling stations (from 30 m to 100 m depth). We relate the assemblage and abundance of the common species to environmental variables and analyze condition of recently settled fish (<50 mm SL). Most of the captured fishes were young-of-the-year flatfishes, dominated by Butter Sole (Isopsetta isolepis), English Sole (Parophrys vetulus), Speckled Sanddab (Citharichthys stigmaeus), and Pacific Sanddab (Citharichthys sordidus). Community analysis of the full dataset showed some variation in species richness among years and high evenness across all sampling sites and years. Depth was a structuring variable for the community, indicated by multivariate nonmetric multidimensional scaling analysis. Generalized additive models for common flatfish species abundances during the summer months indicated depth preferences, with Butter Sole, English Sole, and Speckled Sanddab at shallower locations and Pacific Sanddab occurring at deeper locations farther offshore. Additionally, while most common species were collected in high abundances in hypoxic conditions, dissolved oxygen was a significant factor in determining flatfish abundance. Condition factor was weakly negatively impacted by low dissolved oxygen for the species assessed, but the strength of the relationship varied by species. Increased sampling frequency and spatial coverage would improve our understanding of this community, especially in light of changing environmental drivers such as decreasing pH, warming water, and episodic periods of low dissolved oxygen coinciding with settlement for many species.

The influence of climate, nutrient loading and predation on spatial and temporal changes in fish assemblages in Narragansett Bay

EPA Science Inventory

Estuarine fish are a highly valued resources that are affected by several factors, including climate, trophic interactions, pollution, and fishing pressure. Here, we examine the spatial and temporal patterns in estuarine fish assemblage in Narragansett Bay, an estuary located in...

Positional Distribution of Fatty Acids in Triacylglycerols and Phospholipids from Fillets of Atlantic Salmon (Salmo Salar) Fed Vegetable and Fish Oil Blends.

PubMed

Ruiz-Lopez, Noemi; Stubhaug, Ingunn; Ipharraguerre, Ignacio; Rimbach, Gerald; Menoyo, David

2015-07-10

The nutritional and functional characteristics of dietary fat are related to the fatty acid (FA) composition and its positional distribution in the triacylglycerol (TAG) fraction. Atlantic salmon is an important source of healthy long chain omega 3 FA (particularly, eicosapentaenoic (EPA) and docoxahexaenoic (DHA) acids). However, the impact of lipid sources in salmon feeds on the regiospecificity of FA in the fish TAG remains to be explored. The present study determines the effect of feeding salmon with blends of palm, rapeseed, and fish oil, providing two different EPA + DHA concentrations (high: H-ED 10.3% and low: L-ED 4.6%) on the fillet lipid class composition and the positional distribution of FA in TAG and phospholipids. The regiospecific analysis of fillet TAG showed that around 50% of the EPA and around 80% of DHA was located in the sn-2 position. The positional distribution of FA in phosphatidylcholine (PC), showed that around 80% of the EPA and around 90% of DHA were located in the sn-2. Fish fed the vegetable-rich diets showed higher EPA in the sn-2 position in PC (77% vs. 83% in the H-ED and L-ED diets, respectively) but similar DHA concentrations. It is concluded that feeding salmon with different EPA + DHA concentrations does not affect their positional distribution in the fillet TAG.

Positional Distribution of Fatty Acids in Triacylglycerols and Phospholipids from Fillets of Atlantic Salmon (Salmo Salar) Fed Vegetable and Fish Oil Blends

PubMed Central

Ruiz-Lopez, Noemi; Stubhaug, Ingunn; Ipharraguerre, Ignacio; Rimbach, Gerald; Menoyo, David

2015-01-01

The nutritional and functional characteristics of dietary fat are related to the fatty acid (FA) composition and its positional distribution in the triacylglycerol (TAG) fraction. Atlantic salmon is an important source of healthy long chain omega 3 FA (particularly, eicosapentaenoic (EPA) and docoxahexaenoic (DHA) acids). However, the impact of lipid sources in salmon feeds on the regiospecificity of FA in the fish TAG remains to be explored. The present study determines the effect of feeding salmon with blends of palm, rapeseed, and fish oil, providing two different EPA + DHA concentrations (high: H-ED 10.3% and low: L-ED 4.6%) on the fillet lipid class composition and the positional distribution of FA in TAG and phospholipids. The regiospecific analysis of fillet TAG showed that around 50% of the EPA and around 80% of DHA was located in the sn-2 position. The positional distribution of FA in phosphatidylcholine (PC), showed that around 80% of the EPA and around 90% of DHA were located in the sn-2. Fish fed the vegetable-rich diets showed higher EPA in the sn-2 position in PC (77% vs. 83% in the H-ED and L-ED diets, respectively) but similar DHA concentrations. It is concluded that feeding salmon with different EPA + DHA concentrations does not affect their positional distribution in the fillet TAG. PMID:26184234

Diet and habitat use by age-0 deepwater sculpins in northern Lake Huron, Michigan and the Detroit River

USGS Publications Warehouse

Roseman, Edward F.

2014-01-01

Deepwater sculpins (Myoxocephalus thompsonii) are an important link in deepwater benthic foodwebs of the Great Lakes. Little information exists about deepwater sculpin spawning habits and early life history ecology due to difficulty in sampling deep offshore habitats. Larval and age-0 deepwater sculpins collected in northern Lake Huron and the Detroit River during 2007 were used to improve our understanding of their habitat use, diet, age, and growth. Peak larval density reached 8.4/1000 m3 in the Detroit River during April and was higher than that in Lake Huron. Offshore bottom trawls at DeTour and Hammond Bay first collected benthic age-0 deepwater sculpins in early September when fish were ≥ 25 mm TL. Otolith analysis revealed that hatch dates for pelagic larvae occurred during late March and larvae remained pelagic for 40 to 60 days. Diet of pelagic larvae (10–21 mm TL) was dominated by calanoid copepods at all sample locations. Diets of benthic age-0 fish varied by location and depth: Mysis and chironomids were prevalent in fish from Hammond Bay and the 91 m site at DeTour, but only chironomids were found in fish from the 37 m DeTour site. This work showed that nearshore epilimnetic sites were important for pelagic larvae and an ontogenetic shift from pelagic planktivore to benthivore occurred at about 25 mm TL in late summer. Age analysis showed that larvae remained pelagic long enough to be transported through the St. Clair–Detroit River system, Lake Erie, and the Niagara River, potentially contributing to populations in Lake Ontario.

Optimum swimming pathways of fish spawning migrations in rivers

USGS Publications Warehouse

McElroy, Brandon; DeLonay, Aaron; Jacobson, Robert

2012-01-01

Fishes that swim upstream in rivers to spawn must navigate complex fluvial velocity fields to arrive at their ultimate locations. One hypothesis with substantial implications is that fish traverse pathways that minimize their energy expenditure during migration. Here we present the methodological and theoretical developments necessary to test this and similar hypotheses. First, a cost function is derived for upstream migration that relates work done by a fish to swimming drag. The energetic cost scales with the cube of a fish's relative velocity integrated along its path. By normalizing to the energy requirements of holding a position in the slowest waters at the path's origin, a cost function is derived that depends only on the physical environment and not on specifics of individual fish. Then, as an example, we demonstrate the analysis of a migration pathway of a telemetrically tracked pallid sturgeon (Scaphirhynchus albus) in the Missouri River (USA). The actual pathway cost is lower than 105 random paths through the surveyed reach and is consistent with the optimization hypothesis. The implication—subject to more extensive validation—is that reproductive success in managed rivers could be increased through manipulation of reservoir releases or channel morphology to increase abundance of lower-cost migration pathways.

[Molecular and cytogenetic characterization of six 46, XX males due to translocations between the short arms of X and Y chromosomes].

PubMed

Xing, Ya; Ji, Xing; Xiao, Bing; Jiang, Wen-ting; Hu, Qin; Hu, Juan; Cao, Ying; Tao, Jiong

2012-08-01

To characterize molecular and cytogenetic abnormalities in six 46, XX males, and to investigate the clinical manifestations and underlying mechanisms in such patients. Clinical data of six XX male patients were collected. Karyotyping, multiple polymerase chain reaction (PCR) and fluorescence in situ hybridization (FISH) were utilized to detect and locate the sex determining region (SRY) gene. PCR and FISH showed that all patients were SRY-positive XX males. All patients have their SRY gene located at the tip of derivative X chromosomes, which have resulted from translocation between short arms of X and Y chromosomes. High resolution karyotyping at 550-750 band level has revealed that the translocation breakpoints were at Xp22.33 and Yp11.2 in three patients. In the remaining patients, the breakpoints were either at Xp22.32 and Yp11.31 or Xp22.31 and Yp11.2. The breakpoints at Xp22.32, Xp22.31 and Yp11.31 were rarely reported. Genotype-phenotype correlation analysis indicated that the clinical manifestations were age-specific. Four adult patients have come to clinical attention due to infertility, with typical features including azoospermia and testis dysgenesis, whereas poorly developed secondary sexual characteristics and short stature were main complaints of adolescence patients, and short stature was the sole symptom in a child patient. Combined karyotyping, PCR and FISH are important for the analysis of XX males. Particularly, high resolution karyotyping is valuable for the refinement of chromosome breakpoints and detailed analysis of genotype-phenotype correlation.

Commentary: selenium study on endangered razorback sucker is flawed

USGS Publications Warehouse

Hamilton, Steven J.

2005-01-01

The razorback sucker (Xyrauchen texanus) is listed as federally endangered throughout its range. A massive recovery effort by the Recovery Implementation Program for Endangered Fish Species in the Upper Colorado River Basin has focused its efforts in the upper Colorado River. The upper Colorado River basin also has two locations that have been identified by the National Irrigation Water Quality Program as having substantial selenium contamination. Selenium is toxic to fishes, affecting reproductive success. Thus, there is concern about potential effects of selenium on the endangered razorback sucker. Two sets of studies have investigated the effects of selenium on razorback suckers, but study results are conflicting. This commentary evaluates studies that claim selenium is not a problem for razorback sucker. We find that study bias was so pervasive that purported conclusions were unwarranted. Contaminated control water, older life stages of fish tested, lack of methodology for analysis of selenium in water, diet, or fish, use of rotifer food, low feeding rates, low growth rates of fish, and improper storage of site waters resulted in an apparent erroneous linkage of high selenium in whole-body residues with no adverse effects.

Ideal free distribution or dynamic game? An agent-based simulation study of trawling strategies with varying information

NASA Astrophysics Data System (ADS)

Beecham, J. A.; Engelhard, G. H.

2007-10-01

An ecological economic model of trawling is presented to demonstrate the effect of trawling location choice strategy on net input (rate of economic gain of fish caught per time spent less costs). Fishing location choice is considered to be a dynamic process whereby trawlers chose from among a repertoire of plastic strategies that they modify if their gains fall below a fixed proportion of the mean gains of the fleet as a whole. The distribution of fishing across different areas of a fishery follows an approximate ideal free distribution (IFD) with varying noise due to uncertainty. The least-productive areas are not utilised because initial net input never reaches the mean yield of better areas subject to competitive exploitation. In cases, where there is a weak temporal autocorrelation between fish stocks in a specific location, a plastic strategy of local translocation between trawls mixed with longer-range translocation increases realised input. The trawler can change its translocation strategy in the light of information about recent trawling success compared to its long-term average but, in contrast to predictions of the Marginal Value Theorem (MVT) model, does not know for certain what it will find by moving, so may need to sample new patches. The combination of the two types of translocation mirrored beam-trawling strategies used by the Dutch fleet and the resultant distribution of trawling effort is confirmed by analysis of historical effort distribution of British otter trawling fleets in the North Sea. Fisheries exploitation represents an area where dynamic agent-based adaptive models may be a better representation of the economic dynamics of a fleet than classically inspired optimisation models.

Effects of landscape features on population genetic variation of a tropical stream fish, Stone lapping minnow, Garra cambodgiensis, in the upper Nan River drainage basin, northern Thailand.

PubMed

Jaisuk, Chaowalee; Senanan, Wansuk

2018-01-01

Spatial genetic variation of river-dwelling freshwater fishes is typically affected by the historical and contemporary river landscape as well as life-history traits. Tropical river and stream landscapes have endured extended geological change, shaping the existing pattern of genetic diversity, but were not directly affected by glaciation. Thus, spatial genetic variation of tropical fish populations should look very different from the pattern observed in temperate fish populations. These data are becoming important for designing appropriate management and conservation plans, as these aquatic systems are undergoing intense development and exploitation. This study evaluated the effects of landscape features on population genetic diversity of Garra cambodgiensis, a stream cyprinid , in eight tributary streams in the upper Nan River drainage basin ( n  = 30-100 individuals/location), Nan Province, Thailand. These populations are under intense fishing pressure from local communities. Based on 11 microsatellite loci, we detected moderate genetic diversity within eight population samples (average number of alleles per locus = 10.99 ± 3.00; allelic richness = 10.12 ± 2.44). Allelic richness within samples and stream order of the sampling location were negatively correlated ( P  < 0.05). We did not detect recent bottleneck events in these populations, but we did detect genetic divergence among populations (Global F ST = 0.022, P  < 0.01). The Bayesian clustering algorithms (TESS and STRUCTURE) suggested that four to five genetic clusters roughly coincide with sub-basins: (1) headwater streams/main stem of the Nan River, (2) a middle tributary, (3) a southeastern tributary and (4) a southwestern tributary. We observed positive correlation between geographic distance and linearized F ST ( P  < 0.05), and the genetic differentiation pattern can be moderately explained by the contemporary stream network (STREAMTREE analysis, R 2 = 0.75). The MEMGENE analysis suggested genetic division between northern (genetic clusters 1 and 2) and southern (clusters 3 and 4) sub-basins. We observed a high degree of genetic admixture in each location, highlighting the importance of natural flooding patterns and possible genetic impacts of supplementary stocking. Insights obtained from this research advance our knowledge of the complexity of a tropical stream system, and guide current conservation and restoration efforts for this species in Thailand.

Weak Concordance between Fish and Macroinvertebrates in Mediterranean Streams

PubMed Central

Larsen, Stefano; Mancini, Laura; Pace, Giorgio; Scalici, Massimiliano; Tancioni, Lorenzo

2012-01-01

Although anthropogenic degradation of riverine systems stimulated a multi-taxon bioassessment of their ecological integrity in EU countries, specific responses of different taxonomic groups to human pressure are poorly investigated in Mediterranean rivers. Here, we assess if richness and composition of macroinvertebrate and fish assemblages show concordant variation along a gradient of anthropogenic pressure in 31 reaches across 13 wadeable streams in central Italy. Fish and invertebrate taxonomic richness was not correlated across sites. However, Mantel test showed that the two groups were significantly, albeit weakly, correlated even after statistically controlling for the effect of environmental variables and site proximity. Variance partitioning with partial Canonical Correspondence Analysis showed that the assemblages of the two groups were influenced by different set of environmental drivers: invertebrates were influenced by water organic content, channel and substratum features, while fish were related to stream temperature (mirroring elevation) and local land-use. Variance partitioning revealed the importance of biotic interactions between the two groups as a possible mechanisms determining concordance. Although significant, the congruence between the groups was weak, indicating that they should not be used as surrogate of each other for environmental assessments in these Mediterranean catchments. Indeed, both richness and patterns in nestedness (i.e. where depauperate locations host only a subset of taxa found in richer locations) appeared influenced by different environmental drivers suggesting that the observed concordance did not result from a co-loss of taxa along similar environmental gradients. As fish and macroinvertebrates appeared sensitive to different environmental factors, we argue that monitoring programmes should consider a multi-assemblage assessment, as also required by the Water Framework Directive. PMID:23251432

Temporary Restoration of Bull Trout Passage at Albeni Falls Dam

DOE Office of Scientific and Technical Information (OSTI.GOV)

Paluch, Mark; Scholz, Allan; McLellan, Holly

2009-07-13

This study was designed to monitor movements of bull trout that were provided passage above Albeni Falls Dam, Pend Oreille River. Electrofishing and angling were used to collect bull trout below the dam. Tissue samples were collected from each bull trout and sent to the U. S. Fish and Wildlife Service Abernathy Fish Technology Center Conservation Genetics Lab, Washington. The DNA extracted from tissue samples were compared to a catalog of bull trout population DNA from the Priest River drainage, Lake Pend Oreille tributaries, and the Clark Fork drainage to determine the most probable tributary of origin. A combined acousticmore » radio or radio tag was implanted in each fish prior to being transported and released above the dam. Bull trout relocated above the dam were able to volitionally migrate into their natal tributary, drop back downstream, or migrate upstream to the next dam. A combination of stationary radio receiving stations and tracking via aircraft, boat, and vehicle were used to monitor the movement of tagged fish to determine if the spawning tributary it selected matched the tributary assigned from the genetic analysis. Seven bull trout were captured during electrofishing surveys in 2008. Of these seven, four were tagged and relocated above the dam. Two were tagged and left below the dam as part of a study monitoring movements below the dam. One was immature and too small at the time of capture to implant a tracking tag. All four fish released above the dam passed by stationary receivers stations leading into Lake Pend Oreille and no fish dropped back below the dam. One of the radio tags was recovered in the tributary corresponding with the results of the genetic test. Another fish was located in the vicinity of its assigned tributary, which was impassable due to low water discharge at its mouth. Two fish have not been located since entering the lake. Of these fish, one was immature and not expected to enter its natal tributary in the fall of 2008. The other fish was large enough to be mature, but at the time of capture its sex was unable to be determined, indicating it may not have been mature at the time of capture. These fish are expected to enter their natal tributaries in early summer or fall of 2009.« less

Active sensing associated with spatial learning reveals memory-based attention in an electric fish

PubMed Central

Longtin, André; Maler, Leonard

2016-01-01

Active sensing behaviors reveal what an animal is attending to and how it changes with learning. Gymnotus sp., a gymnotiform weakly electric fish, generates an electric organ discharge (EOD) as discrete pulses to actively sense its surroundings. We monitored freely behaving gymnotid fish in a large dark “maze” and extracted their trajectories and EOD pulse pattern and rate while they learned to find food with electrically detectable landmarks as cues. After training, they more rapidly found food using shorter, more stereotyped trajectories and spent more time near the food location. We observed three forms of active sensing: sustained high EOD rates per unit distance (sampling density), transient large increases in EOD rate (E-scans) and stereotyped scanning movements (B-scans) were initially strong at landmarks and food, but, after learning, intensified only at the food location. During probe (no food) trials, after learning, the fish's search area and intense active sampling was still centered on the missing food location, but now also increased near landmarks. We hypothesize that active sensing is a behavioral manifestation of attention and essential for spatial learning; the fish use spatial memory of landmarks and path integration to reach the expected food location and confine their attention to this region. PMID:26961107

Active sensing associated with spatial learning reveals memory-based attention in an electric fish.

PubMed

Jun, James J; Longtin, André; Maler, Leonard

2016-05-01

Active sensing behaviors reveal what an animal is attending to and how it changes with learning. Gymnotus sp, a gymnotiform weakly electric fish, generates an electric organ discharge (EOD) as discrete pulses to actively sense its surroundings. We monitored freely behaving gymnotid fish in a large dark "maze" and extracted their trajectories and EOD pulse pattern and rate while they learned to find food with electrically detectable landmarks as cues. After training, they more rapidly found food using shorter, more stereotyped trajectories and spent more time near the food location. We observed three forms of active sensing: sustained high EOD rates per unit distance (sampling density), transient large increases in EOD rate (E-scans) and stereotyped scanning movements (B-scans) were initially strong at landmarks and food, but, after learning, intensified only at the food location. During probe (no food) trials, after learning, the fish's search area and intense active sampling was still centered on the missing food location, but now also increased near landmarks. We hypothesize that active sensing is a behavioral manifestation of attention and essential for spatial learning; the fish use spatial memory of landmarks and path integration to reach the expected food location and confine their attention to this region. Copyright © 2016 the American Physiological Society.

Spatial and temporal statistical analysis of bycatch data: Patterns of sea turtle bycatch in the North Atlantic

USGS Publications Warehouse

Gardner, B.; Sullivan, P.J.; Morreale, S.J.; Epperly, S.P.

2008-01-01

Loggerhead (Caretta caretta) and leatherback (Dermochelys coriacea) sea turtle distributions and movements in offshore waters of the western North Atlantic are not well understood despite continued efforts to monitor, survey, and observe them. Loggerhead and leatherback sea turtles are listed as endangered by the World Conservation Union, and thus anthropogenic mortality of these species, including fishing, is of elevated interest. This study quantifies spatial and temporal patterns of sea turtle bycatch distributions to identify potential processes influencing their locations. A Ripley's K function analysis was employed on the NOAA Fisheries Atlantic Pelagic Longline Observer Program data to determine spatial, temporal, and spatio-temporal patterns of sea turtle bycatch distributions within the pattern of the pelagic fishery distribution. Results indicate that loggerhead and leatherback sea turtle catch distributions change seasonally, with patterns of spatial clustering appearing from July through October. The results from the space-time analysis indicate that sea turtle catch distributions are related on a relatively fine scale (30-200 km and 1-5 days). The use of spatial and temporal point pattern analysis, particularly K function analysis, is a novel way to examine bycatch data and can be used to inform fishing practices such that fishing could still occur while minimizing sea turtle bycatch. ?? 2008 NRC.

Mercury and selenium in fish from the Savannah river: species, trophic level, and locational differences.

PubMed

Burger, J; Gaines, K F; Boring, C S; Stephens, W L; Snodgrass, J; Gochfeld, M

2001-10-01

Levels of contaminants in fish are of considerable interest because of potential effects on the fish themselves, as well as on other organisms that consume them. In this article we compare the mercury levels in muscle tissue of 11 fish species from the Savannah River, as well as selenium levels because of its known protective effect against mercury toxicity. We sampled fish from three stretches of the river: upstream, along, and downstream the Department of Energy's Savannah River Site, a former nuclear material production facility. We test the null hypothesis that there were no differences in mercury and selenium levels in fish tissue as a function of species, trophic level, and location along the river. There were significant interspecific differences in mercury levels, with bowfin (Amia calva) having the highest levels, followed by largemouth bass (Micropterus salmoides) and pickerel (Esox niger). Sunfish (Lepomis spp.) had the lowest levels of mercury. As expected, these differences generally reflected trophic levels. There were few significant locational differences in mercury levels, and existing differences were not great, presumably reflecting local movements of fish between the sites examined. Selenium and mercury concentrations were positively correlated only for bass, perch (Perca flavescens), and red-breasted sunfish (Lepomis auritus). Mercury levels were positively correlated with body mass of the fish for all species except American eel (Anguilla rostrata) and bluegill sunfish (L. macrochirus). The mercury and selenium levels in fish tissue from the Savannah River are similar to or lower than those reported in many other studies, and in most cases pose little risk to the fish themselves or to other aquatic consumers, although levels in bowfin and bass are sufficiently high to pose a potential threat to high-level consumers. Copyright 2001 Academic Press.

Chloride concentrations and stable isotopes of hydrogen and oxygen in surface water and groundwater in and near Fish Creek, Teton County, Wyoming, 2005-06

USGS Publications Warehouse

Eddy-Miller, Cheryl A.; Wheeler, Jerrod D.

2010-01-01

Fish Creek, an approximately 25-kilometer long tributary to the Snake River, is located in Teton County in western Wyoming near the town of Wilson. The U.S. Geological Survey, in cooperation with the Teton Conservation District, conducted a study to determine the interaction of local surface water and groundwater in and near Fish Creek. In conjunction with the surface water and groundwater interaction study, samples were collected for analysis of chloride and stable isotopes of hydrogen and oxygen in water. Chloride concentrations ranged from 2.9 to 26.4 milligrams per liter (mg/L) near Teton Village, 1.2 to 4.9 mg/L near Resor's Bridge, and 1.8 to 5.0 mg/L near Wilson. Stable isotope data for hydrogen and oxygen in water samples collected in and near the three cross sections on Fish Creek are shown in relation to the Global Meteoric Water Line and the Local Meteoric Water Line.

Total mercury and methylmercury levels in fish from hydroelectric reservoirs in Tanzania.

PubMed

Ikingura, J R; Akagi, H

2003-03-20

Total mercury (THg) and methylmercury (MeHg) levels have been determined in fish species representing various tropic levels in four major hydroelectric reservoirs (Mtera, Kidatu, Hale-Pangani, Nyumba ya Mungu) located in two distinct geographical areas in Tanzania. The Mtera and Kidatu reservoirs are located along the Great Ruaha River drainage basin in the southern central part of the country while the other reservoirs are located within the Pangani River basin in the north eastern part of Tanzania. Fish mercury levels ranged from 5 to 143 microg/kg (mean 40 microg/kg wet weight) in the Mtera Reservoir, and from 7 to 119 microg/kg (mean 21 microg/kg) in the Kidatu Reservoir downstream of the Great Ruaha River. The lowest THg levels, in the range 1-10 microg/kg (mean 5 microg/kg), were found in fish from the Nyumba ya Mungu (NyM) Reservoir, which is one of the oldest reservoirs in the country. Fish mercury levels in the Pangani and Hale mini-reservoirs, downstream of the NyM Reservoir, were in the order of 3-263 microg/kg, with an average level of 21 microg/kg. These THg levels are among the lowest to be reported in freshwater fish from hydroelectric reservoirs. Approximately 56-100% of the total mercury in the fish was methylmercury. Herbivorous fish species contained lower THg levels than the piscivorous species; this was consistent with similar findings in other fish studies. In general the fish from the Tanzanian reservoirs contained very low mercury concentrations, and differed markedly from fish in hydroelectric reservoirs of similar age in temperate and other regions, which are reported to contain elevated mercury concentrations. The low levels of mercury in the fish correlated with low background concentrations of THg in sediment and flooded soil (mean 2-8 microg/kg dry weight) in the reservoir surroundings. This suggested a relatively clean reservoir environment that has not been significantly impacted by mercury contamination from natural or anthropogenic sources.

Statistical evaluation of a project to estimate fish trajectories through the intakes of Kaplan hydropower turbines

NASA Astrophysics Data System (ADS)

Sutton, Virginia Kay

This paper examines statistical issues associated with estimating paths of juvenile salmon through the intakes of Kaplan turbines. Passive sensors, hydrophones, detecting signals from ultrasonic transmitters implanted in individual fish released into the preturbine region were used to obtain the information to estimate fish paths through the intake. Aim and location of the sensors affects the spatial region in which the transmitters can be detected, and formulas relating this region to sensor aiming directions are derived. Cramer-Rao lower bounds for the variance of estimators of fish location are used to optimize placement of each sensor. Finally, a statistical methodology is developed for analyzing angular data collected from optimally placed sensors.

Biomonitoring of Environmental Status and Trends (BEST) Program: Environmental Contaminants and their Effects on Fish in the Mississippi River Basin

USGS Publications Warehouse

Schmitt, Christopher J.

2002-01-01

We collected, examined, and analyzed 1378 fish of 22 species from 47 sites in the Mississippi River basin (MRB) during 1995 and from a reference site in 1996. The sampling sites in the MRB represented National Contaminant Biomonitoring Program (NCBP) stations situated at key points on major rivers and National Water- Quality Assessment Program (NAWQA) stations located on lower-order rivers and streams in the Eastern Iowa Basins (EIB) and Mississippi Embayment (MSE) Study Units. The reference site was the water supply system of the USGS-Leetown Science Center in rural Jefferson County, WV. Common carp (Cyprinus carpio; carp) and black basses (Micropterus spp.; bass), the targeted species, together represented 82% of the fish collected. Each fish was examined in the field for externally and internally visible gross lesions, selected organs were weighed to compute various ponderal and organo-somatic indices, and selected tissues and fluids were obtained and preserved for analysis of biomarkers. Fish health indicators included splenic macrophage aggregates, lysozyme activity, and hispathological analysis of liver, kidney, and other tissues. Reproductive biomarkers included analysis of plasma concentrations of vitellogenin (vtg) and the sex steroid hormones 17-estradiol (E2) and 11-ketotestosterone (11- kt); and the histological determination of percent oocyte atresia (in female fish) and gonadal stage. Hepatic ethoxyresorufin O-deethylase (EROD) activity was also measured. Composite samples of whole fish from each station were grouped by species and gender and analyzed for persistent organochlorine and elemental contaminants and for dioxin-like activity (TCDD-EQ) using the H4IIE rat hepatoma cell bioassay. Organochlorine and inorganic contaminant concentrations in fish were generally low relative to historical levels at most sites, but remained present at concentrations representing threats to piscivorous wildlife in some locations. Toxaphene and DDT (mostly as p,p?-DDE) concentrations remained elevated in fish from the cottongrowing regions of the lower Mississippi valley, and were generally greater in the smaller streams draining agricultural areas (that is, in the MSE Study Unit) than at large river sites. Cyclodiene pesticide concentrations were also greatest in the EIB Study Unit and elsewhere in the corn-growing regions of the mid-MRB. Former point-sources of organochlorine pesticides also remained evident, especially in the Mississippi River near Memphis, TN. Consistent with previous findings, total PCB concentrations tended to be greatest (1-3 g/g) in the industrialized and urbanized Ohio River and Upper Mississippi sub-basins and at Memphis, TN, and were generally correlated with TCDD-EQ and EROD activity. Conversely, PCB concentrations were low (0.3 g/g) in bass from the Mississippi River at Memphis and several other sites and in carp from one MSE site. Concentrations of Se were also great enough to constitute a hazard to piscivorous wildlife (>0.6 g/g) at several MRB sites in the western parts of the MRB and were especially high (4-5 g/g) in fish from John Martin Reservoir, CO, where elevated concentrations were reported previously. Biomarker results indicated that fish from many stations had been exposed to contaminants, but at no sites did findings indicate exposure to high concentrations of toxic chemicals. Noteworthy among biomarker findings was that 73% of the male smallmouth bass (Micropterus dolomieui) from the Mississippi River at Lake City, MN (Lake Pepin) were intersex as indicated by the histological detection of ovotestes; and the combined EROD and H4IIE results indicated that fish from several rural sites in the

Ancient DNA analysis of Indigenous rockfish use on the Pacific Coast: Implications for marine conservation areas and fisheries management

PubMed Central

McKechnie, Iain; Yang, Dongya Y.

2018-01-01

Rockfish (Sebastes spp.) are a common marine fish in nearshore and continental shelf environments in the North Pacific Ocean. They are frequently identified in coastal archaeological sites in western North America; however, the morphological similarity of rockfish species limits conventional zooarchaeological identifications to the genus level. This study applies ancient DNA analysis to 96 archaeological rockfish specimens from four sites on separate islands in an archipelago on western Vancouver Island, British Columbia, Canada. Two of the archaeological sites are located within a marine protected area specifically designed to facilitate the recovery of inshore rockfish populations; two sites are located outside this boundary and remain subject to considerable fishing pressure. Using mitochondrial 16S and control region DNA sequences, we identify at least twelve different rockfish species utilized during the past 2,500 years. Identification of rockfish at closely spaced and contemporaneously occupied sites confirms that a variety of Sebastes species were consistently exploited at each site, with more exposed areas having a higher number of species present. Identification results indicate that four of the twelve species did not occur within the conservation area boundary and, instead, were found in sites where commercial and recreational fishing continues to be permitted. This study demonstrates that ancient DNA identifications of archaeological assemblages can complement and expand perspective on modern day fisheries conservation and management in this National Park Reserve and First Nations ancestral territory. PMID:29438388

Ancient DNA analysis of Indigenous rockfish use on the Pacific Coast: Implications for marine conservation areas and fisheries management.

PubMed

Rodrigues, Antonia T; McKechnie, Iain; Yang, Dongya Y

2018-01-01

Rockfish (Sebastes spp.) are a common marine fish in nearshore and continental shelf environments in the North Pacific Ocean. They are frequently identified in coastal archaeological sites in western North America; however, the morphological similarity of rockfish species limits conventional zooarchaeological identifications to the genus level. This study applies ancient DNA analysis to 96 archaeological rockfish specimens from four sites on separate islands in an archipelago on western Vancouver Island, British Columbia, Canada. Two of the archaeological sites are located within a marine protected area specifically designed to facilitate the recovery of inshore rockfish populations; two sites are located outside this boundary and remain subject to considerable fishing pressure. Using mitochondrial 16S and control region DNA sequences, we identify at least twelve different rockfish species utilized during the past 2,500 years. Identification of rockfish at closely spaced and contemporaneously occupied sites confirms that a variety of Sebastes species were consistently exploited at each site, with more exposed areas having a higher number of species present. Identification results indicate that four of the twelve species did not occur within the conservation area boundary and, instead, were found in sites where commercial and recreational fishing continues to be permitted. This study demonstrates that ancient DNA identifications of archaeological assemblages can complement and expand perspective on modern day fisheries conservation and management in this National Park Reserve and First Nations ancestral territory.

Colville Tribal Fish Hatchery, 2001-2002 Annual Report.

DOE Office of Scientific and Technical Information (OSTI.GOV)

Arteburn, John; Christensen, David

2003-03-01

Federal hydropower projects as well as private power utility systems have had a major negative impact upon anadromous fish resources that once flourished in the Columbia River and it's tributaries. Several areas have been completely blocked to anadromous fish by dams, destroying the primary food resource (salmon) for many native people forcing them to rely heavily upon resident fish to replace these lost resources. The Colville Tribal Fish Hatchery is an artificial production program that addresses the loss of anadromous fish resources in the Upper Columbia Sub-Region within the ''blocked area'' created by the construction of Chief Joseph and Grandmore » Coulee Dams. This project enhances resident fisheries located in the Intermountain and Columbia Cascade Provinces, specifically within the Colville Reservation portion of the Upper Columbia, SanPoil and Oakanogan Sub-Basins. The project partially mitigates for anadromous fish losses through protection/augmentation of resident fish populations to enhance fishery potential (i.e. in-place, out-of-kind mitigation) pursuant to Resident Fish Substitution Policy of the Northwest Power Planning Councils Fish and Wildlife Program. The hatchery was accepted into the Council's Fish and Wildlife Program in 1984 and the hatchery was completed in 1990. The Colville Tribal Hatchery (CTH) is located on the northern bank of the Columbia River just down stream of the town of Bridgeport, Washington that is just down stream of Chief Joseph Dam. The hatchery is located on land owned by the Colville Tribes. The minimum production quota for this facility is 22,679 kg (50,000 lbs.) of trout annually. All fish produced are released into reservation waters, including boundary waters in an effort to provide a successful subsistence/recreational fishery for Colville Tribal members and provide for a successful nonmember sport fishery. The majority of the fish distributed from the facility are intended to support ''carry-over'' fisheries. Fish produced at the facility are intended to be of sufficient quality and quantity to meet specific monitoring and evaluation goals and objectives outlines in the 2002 statement of work (SOW).« less

77 FR 60454 - Proposed Information Collection; Declaration for Importation or Exportation of Fish or Wildlife

Federal Register 2010, 2011, 2012, 2013, 2014

2012-10-03

... country of origin of the fish or wildlife. In addition, certain information, such as the airway bill or bill of lading number, the location of the fish or wildlife for inspection, and the number of cartons.... Campbell, Chief, Division of Policy and Directives Management, U.S. Fish and Wildlife Service. [FR Doc...

Lag effects in the impacts of mass coral bleaching on coral reef fish, fisheries, and ecosystems.

PubMed

Graham, Nicholas A J; Wilson, Shaun K; Jennings, Simon; Polunin, Nicholas V C; Robinson, Jan; Bijoux, Jude P; Daw, Tim M

2007-10-01

Recent episodes of coral bleaching have led to wide-scale loss of reef corals and raised concerns over the effectiveness of existing conservation and management efforts. The 1998 bleaching event was most severe in the western Indian Ocean, where coral declined by up to 90% in some locations. Using fisheries-independent data, we assessed the long-term impacts of this event on fishery target species in the Seychelles, the overall size structure of the fish assemblage, and the effectiveness of two marine protected areas (MPAs) in protecting fish communities. The biomass of fished species above the size retained in fish traps changed little between 1994 and 2005, indicating no current effect on fishery yields. Biomass remained higher in MPAs, indicating they were effective in protecting fish stocks. Nevertheless, the size structure of the fish communities, as described with size-spectra analysis, changed in both fished areas and MPAs, with a decline in smaller fish (<30 cm) and an increase in larger fish (>45 cm). We believe this represents a time-lag response to a reduction in reef structural complexity brought about because fishes are being lost through natural mortality and fishing, and are not being replaced by juveniles. This effect is expected to be greater in terms of fisheries productivity and, because congruent patterns are observed for herbivores, suggests that MPAs do not offer coral reefs long-term resilience to bleaching events. Corallivores and planktivores declined strikingly in abundance, particularly in MPAs, and this decline was associated with a similar pattern of decline in their preferred corals. We suggest that climate-mediated disturbances, such as coral bleaching, be at the fore of conservation planning for coral reefs.

Evaluating patterns and drivers of spatial change in the recreational guided fishing sector in Alaska

PubMed Central

2017-01-01

Understanding the impacts of recreational fishing on habitats and species, as well as the social and ecological importance of place to anglers, requires information on the spatial distribution of fishing activities. This study documented long-term changes in core fishing areas of a major recreational fishery in Alaska and identified biological, regulatory, social, and economic drivers of spatial fishing patterns by charter operators. Using participatory mapping and in-person interviews, we characterized the spatial footprint of 46 charter operators in the communities of Sitka and Homer since the 1990s. The spatial footprint differed between Homer and Sitka respondents, with Homer operators consistently using larger areas for Pacific halibut than Sitka operators. Homer and Sitka showed opposite trends in core fishing location area over time, with an overall decrease in Homer and an overall increase in Sitka. For both Sitka and Homer respondents, the range of areas fished was greater for Pacific halibut than for rockfish/lingcod or Pacific salmon. Spatial patterns were qualitatively different between businesses specializing in single species trips and those that operated multispecies trips and between businesses with one vessel and those with multiple vessels. In Homer, the most frequently cited reasons for changes in the location and/or extent of fishing were changes in trip type and the price of fuel, while in Sitka, the most frequently cited reasons for spatial shifts were changes to Pacific halibut regulations and gaining experience or exploring new locations. The diversity of charter fishing strategies in Alaska may allow individual charter operators to respond differently to perturbations and thus maintain resilience of the industry as a whole to social, environmental, and regulatory change. This research also highlights the importance of understanding fishers’ diverse portfolio of activities to effective ecosystem-based management. PMID:28632745

Evaluating patterns and drivers of spatial change in the recreational guided fishing sector in Alaska.

PubMed

Chan, Maggie N; Beaudreau, Anne H; Loring, Philip A

2017-01-01

Understanding the impacts of recreational fishing on habitats and species, as well as the social and ecological importance of place to anglers, requires information on the spatial distribution of fishing activities. This study documented long-term changes in core fishing areas of a major recreational fishery in Alaska and identified biological, regulatory, social, and economic drivers of spatial fishing patterns by charter operators. Using participatory mapping and in-person interviews, we characterized the spatial footprint of 46 charter operators in the communities of Sitka and Homer since the 1990s. The spatial footprint differed between Homer and Sitka respondents, with Homer operators consistently using larger areas for Pacific halibut than Sitka operators. Homer and Sitka showed opposite trends in core fishing location area over time, with an overall decrease in Homer and an overall increase in Sitka. For both Sitka and Homer respondents, the range of areas fished was greater for Pacific halibut than for rockfish/lingcod or Pacific salmon. Spatial patterns were qualitatively different between businesses specializing in single species trips and those that operated multispecies trips and between businesses with one vessel and those with multiple vessels. In Homer, the most frequently cited reasons for changes in the location and/or extent of fishing were changes in trip type and the price of fuel, while in Sitka, the most frequently cited reasons for spatial shifts were changes to Pacific halibut regulations and gaining experience or exploring new locations. The diversity of charter fishing strategies in Alaska may allow individual charter operators to respond differently to perturbations and thus maintain resilience of the industry as a whole to social, environmental, and regulatory change. This research also highlights the importance of understanding fishers' diverse portfolio of activities to effective ecosystem-based management.

Genotoxicity of freshwater ecosystem shows DNA damage in preponderant fish as validated by in vivo micronucleus induction in gill and kidney erythrocytes.

PubMed

Obiakor, M O; Okonkwo, J C; Ezeonyejiaku, C D

2014-12-01

Genotoxicity of Anambra River was studied by micronucleus (MN) assay of preponderant fish species in the river. The micronucleus indices obtained were used as biomarker to estimate and predict pollution profile and possible danger of feeding on the aquatic species. Micronuclei profile of the fish was measured from gill and kidney erythrocytes using microscopic technique. Season, species and location effects on micronuclei, together with their interactions were also determined. Two major seasons (rainy and dry) and preponderant fish species in the river (Synodontis clarias, Linnaeus, 1758 and Tilapia nilotica, Linnaeus, 1757) were studied at five distinct locations that displayed differential environmental stresses. The study showed that the micronucleus index of fish is an excellent biomarker for measuring pollution level and genotoxicity of freshwater habitat. Season, species of fish and location affect micronuclei profile of the fish species sampled in the river. Disease outbreak among rural dwellers depending on the river for domestic and other uses is imminent and they lack knowledge on its health implication. Moreover, the study maintained that the micronuclei in fish could be measured from either the gill or kidney; however, gill is more efficient as it enables collection of several samples from the same individuals without sacrificing it, and Synodontis clarias fish species appeared to be more vulnerable to the genotoxic damage than Tilapia nilotica. Consequently, the study recommended regular monitoring (micronucleus tests) of edible aquatic life such as Synodontis clarias in order to eliminate the danger of people feeding on toxic metals, some of which are carcinogenic. Copyright © 2014 Elsevier B.V. All rights reserved.

Patterns of larval source distribution and mixing in early life stages of Pacific cod (Gadus macrocephalus) in the southeastern Bering Sea

NASA Astrophysics Data System (ADS)

Miller, Jessica A.; DiMaria, Ruth A.; Hurst, Thomas P.

2016-12-01

Effective and sustainable management depends on knowledge of spawning locations and their relative contributions to marine fish populations. Pacific cod (Gadus macrocephalus) in the southeastern Bering Sea aggregate at discrete spawning locations but there is little information on patterns of larval dispersal and the relative contribution of specific spawning areas to nursery habitats. Age-0 Pacific cod from two cohorts (2006 and 2008) were examined to address the following questions: (1) does size, age, and otolith chemistry vary among known capture locations; (2) can variation in elemental composition of the otolith cores (early larval signatures) be used to infer the number of chemically distinct sources contributing to juvenile recruits in the Bering Sea; and (3) to what extent are juvenile collection locations represented by groups of fish with similar chemical histories throughout their early life history? Hierarchical cluster (HCA) and discriminant function analyses (DFA) were used to examine variation in otolith chemistry at discrete periods throughout the early life history. HCA identified five chemically distinct groups of larvae in the 2006 cohort and three groups in 2008; however, three sources accounted for 80-100% of the juveniles in each year. DFA of early larval signatures indicated that there were non-random spatial distributions of early larvae in both years, which may reflect interannual variation in regional oceanography. There was also a detectable and substantial level of coherence in chemical signatures within groups of fish throughout the early life history. The variation in elemental signatures throughout the early life history (hatch to capture) indicates that otolith chemical analysis could be an effective tool to further clarify larval sources and dispersal, identify juvenile nursery habitats, and estimate the contributions of juvenile nursery habitats to the adult population within the southeastern Bering Sea.

1H NMR Spectroscopy and MVA Analysis of Diplodus sargus Eating the Exotic Pest Caulerpa cylindracea.

PubMed

De Pascali, Sandra A; Del Coco, Laura; Felline, Serena; Mollo, Ernesto; Terlizzi, Antonio; Fanizzi, Francesco P

2015-06-05

The green alga Caulerpa cylindracea is a non-autochthonous and invasive species that is severely affecting the native communities in the Mediterranean Sea. Recent researches show that the native edible fish Diplodus sargus actively feeds on this alga and cellular and physiological alterations have been related to the novel alimentary habits. The complex effects of such a trophic exposure to the invasive pest are still poorly understood. Here we report on the metabolic profiles of plasma from D. sargus individuals exposed to C. cylindracea along the southern Italian coast, using 1H NMR spectroscopy and multivariate analysis (Principal Component Analysis, PCA, Orthogonal Partial Least Square, PLS, and Orthogonal Partial Least Square Discriminant Analysis, OPLS-DA). Fish were sampled in two seasonal periods from three different locations, each characterized by a different degree of algal abundance. The levels of the algal bisindole alkaloid caulerpin, which is accumulated in the fish tissues, was used as an indicator of the trophic exposure to the seaweed and related to the plasma metabolic profiles. The profiles appeared clearly influenced by the sampling period beside the content of caulerpin, while the analyses also supported a moderate alteration of lipid and choline metabolism related to the Caulerpa-based diet.

A review of dioxins/furans and methyl mercury in fish from the Penobscot river, located near Lincoln, Maine.

PubMed

Williams, Robert L; Cseh, Larry

2007-04-01

The Agency for Toxic Substances and Disease Registry (ATSDR) was requested to review the analytical results of tissue samples from fish caught in the Penobscot river in Maine, calculate fish consumption limits and provide a public health opinion regarding the health implications associated with eating the contaminated fish. Fish consumption limits were calculated to provide guidance on the amount of fish that a person may eat monthly that would probably not pose a public health threat. Earlier, in 1987, the Maine Bureau of Health (BOH) issued a fish consumption advisory for portions of the Penobscot river to protect the public from exposures to dioxins/furans and methyl mercury-contaminated fish. From 1988 to 2003 the state of Maine conducted fish surveys at four locations along the Penobscot river to monitor the levels of dioxins/furans and methyl mercury contamination. In 2005, ATSDR reviewed the sampling results for two fish species (i.e., bottom feeders and predators) collected from the Penobscot river that revealed various levels of dioxins/furans and methyl mercury. The United States Environmental Protection Agency's (US EPA) guidance for evaluating potential health threats associated with contaminated fish recommends that a minimum of two target species be sampled including one predatory and one bottom feeding species. Target species are chosen to meet the following criteria: (1) known to accumulate high concentrations of target contaminants in their tissues; (2) normally populate the freshwater system being studied; (3) are routinely caught and consumed by anglers; (4) nonmigratory; (5) pollutant-tolerant; (6) easily identified; (7) abundant and easy to collect and (8) of sufficient size to provide adequate tissue samples for analyses of contaminants (US EPA, 2000). The analytical results of these fish tissue samples appear to indicate that toxic equivalency quotients concentrations of dioxins/furans have slightly decreased since 1988. In contrast, fish tissue levels of methyl mercury appear to have increased slightly since 1988. Dioxins/furans and methyl mercury levels detected in fish tissue samples caught in the Penobscot river located near Lincoln, Maine, may continue to pose a public health hazard to persons who consume the fish daily, depending on the amount consumed. The ATSDR concurred with Maine BOH's fish advisory for dioxins/furans and methyl mercury, that is, currently in place for portions of the Penobscot river near Lincoln.

Stocking of Offsite Waters for Hungry Horse Dam Mitigation Creston National Fish Hatchery, FY 2006 Annual Report.

DOE Office of Scientific and Technical Information (OSTI.GOV)

Hooley, Sharon

2009-03-20

A total of 350,000, M012 strain, westslope cutthroat trout (WCT) eggs were received from Montana Fish Wildlife & Parks (MFWP), Washoe Park State Fish Hatchery in June of 2005 to accomplish this fishery management objective. These eggs were incubated, hatched and reared entirely inside the hatchery nursery building using a protected well water supply. Fish grew according to schedule and survival was excellent. The hatchery achieved a 0.78 feed fed to pounds gained conversion ratio for this group of WCT. Not all of the progenies from this fish lot were used for Hungry Horse Dam Fishery Mitigation Implementation. Some weremore » used for other regional fishery management projects. Westslope cutthroat trout were reared using approved fish culture techniques as recommended in the USFWS Fish Hatchery Management Handbook and also utilizing a regimen adapted for hatchery specific site conditions. The fish health for these WCT was very good. Survival from first feeding fry stage to stocking was 79%. The hatchery had an annual fish health inspection performed by the USFWS Bozeman Fish Health Center in mid March of 2006. This inspection found all fish lots at Creston to be disease free. The Montana State Fish Health Board has placed the hatchery under a limited quarantine since May of 2005 due to an epizootic of Furunculosis. This classification has allowed the Creston NFH to stock disease free fish in locations approved by regional fish managers. The hatchery has been working with the State Fish Pathologist to remove the limited quarantine classification from the facility. Although fish health for all station fish lots remains disease free, MFWP has asserted it will not remove the limited quarantine until the new influent water treatment system, including the ultraviolet disinfection unit, is running full time, year round. The USFWS is working to secure the additional funding necessary to operate the treatment building year round. Distribution of the WCT took place from March through June. The stocking locations on the Flathead Reservation and State managed waters were identified by Confederated Salish and Kootenai Tribe (CSKT) and MFWP fishery biologists. Post release survival and angler success is monitored routinely by CSKT and MFWP fishery technicians. Stocking numbers and locations vary annually based on the results of biological monitoring, creel evaluations and adaptive management decisions. A total of 99,126 WCT were stocked during nine distribution trips in management approved waters (see Table 1). The average size of WCT at stocking was 3.91-inches. A total of 101,600, Arlee strain, rainbow trout (RBT) eggs were received from the Ennis National Fish Hatchery, Ennis, Montana, in December of 2005 and 35,000 Kamloops strain eggs were received from Murray Springs SFH, Eureka, Montana, in March of 2006 to accomplish this fishery management objective. The RBT were reared using approved fish culture techniques as recommended in the USFWS Fish Hatchery Management Handbook. There was no fish health related problems associated with this lot of fish. Survival from swim up fry stage to stocking was 93% for the Arlee's and 79% for the Kamloops. The hatchery achieved a 0.68 feed fed to pounds gained conversion ratio for the Arlee and 0.97 for the Kamloops RBT. The excellent feed conversion ratio can be attributed to refined feeding techniques and the use of an extruded high performance fry feed made with premium fish meal and marine fish oil. The Arlee strain of rainbow trout is requested for this fishery mitigation objective because the chosen stocking locations are terminal basin reservoirs or lakes, habitat conditions prevent natural spawning runs and returns to the creel are more favorable then for native westslope cutthroat trout. MFWP also requested a fall plant of Kamloops strain RBT and they will be evaluated for performance and future fall stockings in Echo Lake. Post release survival and angler success is monitored routinely by the Confederated Salish and Kootenai Tribe (CSKT) and Montana Fish Wildlife & Parks (MFWP) fishery technicians. Stocking numbers and locations vary annually based on the results of biological monitoring, creel evaluations and habitat conditions. The RBT were stocked in six distribution trips from June through September. The number of fish stocked and the receiving waters are identified below (see Table 2).« less

Mercury levels of yellowfin tuna (Thunnus albacares) are associated with capture location.

PubMed

Nicklisch, Sascha C T; Bonito, Lindsay T; Sandin, Stuart; Hamdoun, Amro

2017-10-01

Mercury is a toxic compound to which humans are exposed by consumption of fish. Current fish consumption advisories focus on minimizing the risk posed by the species that are most likely to have high levels of mercury. Less accounted for is the variation within species, and the potential role of the geographic origin of a fish in determining its mercury level. Here we surveyed the mercury levels in 117 yellowfin tuna caught from 12 different locations worldwide. Our results indicated significant variation in yellowfin tuna methylmercury load, with levels that ranged from 0.03 to 0.82 μg/g wet weight across individual fish. Mean mercury levels were only weakly associated with fish size (R 2  < 0.1461) or lipid content (R 2  < 0.00007) but varied significantly, by a factor of 8, between sites. The results indicate that the geographic origin of fish can govern mercury load, and argue for better traceability of fish to improve the accuracy of exposure risk predictions. Copyright © 2017 Elsevier Ltd. All rights reserved.

IDENTIFICATION AND LOCATION OF FUNDAMENTAL FISH ASSEMBLAGES IN THE MID-ATLANTIC HIGHLANDS

EPA Science Inventory

To predict fish community response to environmental restoration in the Highlands Region one must first have information on fish abundance and diversity. We used data collected by the US Environmental Protection Agency's EMAP (Environmental Monitoring and Assessment Program) to i...

Migration and spawning of radio-tagged zulega Prochilodus argenteus in a dammed Brazilian river

USGS Publications Warehouse

Godinho, Alexandre L.; Kynard, B.

2006-01-01

It is difficult for agencies to evaluate the impacts of the many planned dams on Sa??o Francisco River, Brazil, migratory fishes because fish migrations are poorly known. We conducted a study on zulega Prochilodus argenteus, an important commercial and recreational fish in the Sa??o Francisco River, to identify migrations and spawning areas and to determine linear home range. During two spawning seasons (2001-2003), we radio-tagged fish in three main-stem reaches downstream of Tre??s Marias Dam (TMD), located at river kilometer (rkm) 2,109. We tagged 10 fish at Tre??s Marias (TM), which is 5 km downstream of TMD; 12 fish at Pontal, which is 28 km downstream of TMD and which includes the mouth of the Abaete?? River, and 10 fish at Cilga, which is 45 km downstream of TMD. Late-stage (ripe) adults tagged in each area during the spawning season remained at or near the tagging site, except for four Cilga fish that went to Pontal and probably spawned. The Pontal area at the Abaete?? River mouth was the most important spawning site we found. Prespawning fish moved back and forth between main-stem staging areas upstream of the Abaete?? River mouth and Pontal for short visits. These multiple visits were probably needed as ripe fish waited for spawning cues from a flooding Abaete?? River. Some fish homed to prespaw ning staging areas, spawning areas, and nonspawning areas. The migratory style of zulega was dualistic, with resident and migratory fish. Total linear home range was also dualistic, with small (<26-km) and large (53-127-km) ranges. The locations of spawning areas and home ranges suggest that the Pontal group (which includes Cilga fish) is one population that occupies about 110 km. The Pontal population overlaps a short distance with a population located downstream of Cilga. Movements of late-stage TM adults suggest that the TM group is a separate population, possibly with connections to populations upstream of TMD. ?? Copyright by the American Fisheries Society 2006.

Stocking of Offsite Waters for Hungry Horse Dam Mitigation; Creston National Fish Hatchery, 2002-2003 Annual Report.

DOE Office of Scientific and Technical Information (OSTI.GOV)

US Fish and Wildlife Service Staff,

2004-02-01

Mitigation Objective 1: Produce Native Westslope Cutthroat Trout at Creston NFH--Task: Acquire eggs and rear up to 100,000 Westslope Cutthroat trout annually for offsite mitigation stocking. Accomplishments: A total of 141,000 westslope cutthroat eggs (M012 strain) was acquired from the State of Montana Washoe Park State Fish Hatchery in May 2002 for this objective. We also received an additional 22,000 westslope cutthroat eggs, MO12 strain naturalized, from feral fish at Rogers Lake, Flathead County, Montana. The fish were reared using approved fish culture techniques as defined in the U.S. Fish and Wildlife Service, Fish Hatchery Management guidelines. Survival from themore » swim up fry stage to stocking was 95.6%. We achieved a 0.80 feed conversion this year on a new diet, Skretting ''Nutra Plus''. Post release survival and angler success is monitored annually by Montana Fish Wildlife and Parks (MFWP) and the Confederated Salish and Kootenai Tribe (CSKT). Stocking numbers and locations vary yearly based on results of biological monitoring and adaptive management. Mitigation Objective 2: Produce Rainbow Trout at Creston NFH--Task: Acquire and rear up to 100,000 Rainbow trout annually for offsite mitigation in closed basin waters. Accomplishments: A total of 54,000 rainbow trout eggs (Arlee strain) was acquired from the Ennis National Fish Hatchery in December 2002 for this objective. The fish were reared using approved fish culture techniques as defined in the U.S. Fish and Wildlife Service, Fish Hatchery Management guidelines. Survival from the swim up fry stage to stocking was 99.9%. We achieved a 0.79 feed conversion this year on a new diet, Skretting ''Nutra Plus''. Arlee rainbow trout are being used for this objective because the stocking locations are terminal basin reservoirs and habitat conditions and returns to the creel are unsuitable for native cutthroat. Post release survival and angler success is monitored annually by the Confederated Salish and Kootenai Tribe (CSKT). Stocking numbers and locations vary yearly based on results of biological monitoring and adaptive management.« less

Predicting Gilthead Sea Bream (Sparus aurata) Freshness by a Novel Combined Technique of 3D Imaging and SW-NIR Spectral Analysis.

PubMed

Ivorra, Eugenio; Verdu, Samuel; Sánchez, Antonio J; Grau, Raúl; Barat, José M

2016-10-19

A technique that combines the spatial resolution of a 3D structured-light (SL) imaging system with the spectral analysis of a hyperspectral short-wave near infrared system was developed for freshness predictions of gilthead sea bream on the first storage days (Days 0-6). This novel approach allows the hyperspectral analysis of very specific fish areas, which provides more information for freshness estimations. The SL system obtains a 3D reconstruction of fish, and an automatic method locates gilthead's pupils and irises. Once these regions are positioned, the hyperspectral camera acquires spectral information and a multivariate statistical study is done. The best region is the pupil with an R² of 0.92 and an RMSE of 0.651 for predictions. We conclude that the combination of 3D technology with the hyperspectral analysis offers plenty of potential and is a very promising technique to non destructively predict gilthead freshness.

Predicting Gilthead Sea Bream (Sparus aurata) Freshness by a Novel Combined Technique of 3D Imaging and SW-NIR Spectral Analysis

PubMed Central

Ivorra, Eugenio; Verdu, Samuel; Sánchez, Antonio J.; Grau, Raúl; Barat, José M.

2016-01-01

A technique that combines the spatial resolution of a 3D structured-light (SL) imaging system with the spectral analysis of a hyperspectral short-wave near infrared system was developed for freshness predictions of gilthead sea bream on the first storage days (Days 0–6). This novel approach allows the hyperspectral analysis of very specific fish areas, which provides more information for freshness estimations. The SL system obtains a 3D reconstruction of fish, and an automatic method locates gilthead’s pupils and irises. Once these regions are positioned, the hyperspectral camera acquires spectral information and a multivariate statistical study is done. The best region is the pupil with an R2 of 0.92 and an RMSE of 0.651 for predictions. We conclude that the combination of 3D technology with the hyperspectral analysis offers plenty of potential and is a very promising technique to non destructively predict gilthead freshness. PMID:27775556

Use of repeat surveys and flow and sediment transport modeling to support fish spawning reef placement in the Detroit River, MI

USGS Publications Warehouse

Kinzel, Paul J.; Nelson, Jonathan M.; Kennedy, Gregory W.; Bennion, David

2016-01-01

The introduction of rock-rubble substrate in rivers, to enhance fish spawning habitat, represents a significant investment in planning, permitting and construction. Where river processes deposit sediment and cover the substrate, its value as fish spawning habitat can be diminished. Therefore, it is crucial in the site se-lection process, that substrate be placed in locations that benefit the fish species of concern and, to the extent possible, ensure its longevity and ecological function. Changes in river bed elevation in these locations due to infilling by bedload sediment can be determined through serial hydrographic surveys. However, in cases where this information is sparse or unavailable, flow and sediment transport modeling can be used to calcu-late sediment mobility in the rock placement locations. In this paper we will demonstrate how these tech-niques are applied in the process of planning for the placement of rock-rubble substrate (reefs) in the Detroit River, Michigan.

Enhanced detection of Rickettsia species in Ixodes pacificus using highly sensitive fluorescence in situ hybridization coupled with Tyramide Signal Amplification.

PubMed

Bagheri, Ghazaleh; Lehner, Jeremy D; Zhong, Jianmin

2017-10-01

Ixodes pacificus is a host of many bacteria including Rickettsia species phylotypes G021 and G022. As part of the overall goal of understanding interactions of phylotypes with their tick host, this study focused on molecular detection of rickettsiae in ovarian and midgut tissue of I. pacificus by fluorescent in situ hybridization (FISH), PCR, and ultrastructural analysis. Of three embedding media (Technovit 8100, Unicryl, and paraffin) tested for generating thin sections, tissues embedded in paraffin resulted in the visualization of bacteria with low autofluorescence in FISH. Digoxigenin-labeled probes were used in FISH to intensify bacterial hybridization signals using Tyramide Signal Amplification reaction. Using this technique, rickettsiae were detected in the cytoplasm of oocytes of I. pacificus. The presence of rickettsiae in the ovary and midgut was further confirmed by PCR and transmission electron microscopic analysis. Overall, the methods in this study can be used to identify locations of tick-borne bacteria in tick tissues and understand transmission routes of bacterial species in ticks. Copyright © 2017 Elsevier GmbH. All rights reserved.

Genomic analysis of CD8+ NK/T cell line, ‘SRIK-NKL’, with array-based CGH (aCGH), SKY/FISH and molecular mapping

PubMed Central

Rossi, Michael; LaDuca, Jeff; Cowell, John; Srivastava, Bejai I.S.; Matsui, Sei-ichi

2010-01-01

We performed aCGH, SKY /FISH, molecular mapping and expression analyses on a permanent CD8+ NK/T cell line, ‘SRIK-NKL’ established from a lymphoma (ALL) patient, in attempt to define the fundamental genetic profile of its unique NK phenotypes. aCGH revealed hemizygous deletion of 6p containing genes responsible for hematopoietic functions. The SKY demonstrated that a constitutive reciprocal translocation, rcpt(5;14)(p13.2;q11) is a stable marker. Using somatic hybrids containing der(5) derived from SRIK-NKL, we found that the breakpoint in one homologue of no. 5 is located upstream of IL7R and also that the breakpoint in no. 14 is located within TRA@. The FISH analysis using BAC which contains TRA@ and its flanking region further revealed a ~231 kb deletion within 14q11 in the der(5) but not in the normal homologue of no. 14. The RT-PCR analysis detected mRNA for TRA@ transcripts which were extending across, but not including, the deleted region. IL7R was detected at least at mRNA levels. These findings were consistent with the immunological findings that TRA@ and IL7R are both expressed at mRNA levels and TRA@ at cytoplasmic protein levels in SRIK-NKL cells. In addition to rept(5;14), aCGH identified novel copy number abnormalities suggesting that the unique phenotype of the SRIK-NKL cell line is not solely due to the TRA@ rearrangement. These findings provide supportive evidence for the notion that SRIK-NKL cells may be useful for studying not only the function of NK cells but also genetic deregulations associated with leukemiogenesis. PMID:17640729

Application of environmental DNA analysis to inform invasive fish eradication operations

NASA Astrophysics Data System (ADS)

Davison, Phillip I.; Copp, Gordon H.; Créach, Véronique; Vilizzi, Lorenzo; Britton, J. R.

2017-04-01

Environmental DNA (eDNA) detection of non-native species has considerable potential to inform management decisions, including identifying the need for population control and/or eradication. An invasive species of European concern is the Asian cyprinid fish, topmouth gudgeon ( Pseudorasbora parva) . Here, eDNA analyses were applied at a commercial angling venue in southern England to inform operations aiming to eradicate P. parva, which had only ever been observed in one of the venue's seven unconnected angling ponds. Eradication of P. parva was initially attempted by repeated depletion of the population using fish traps (crayfish traps fitted with 5 mm mesh netting) and the introduction of native predators over a 4-year period. The very low number of P. parva captured following these eradication efforts suggested a possible population crash. Conventional PCR analysis of water samples using species-specific primers was applied to all seven ponds to confirm that P. parva was present in only one pond, that the eradication attempt had indeed failed and that the species' distribution in the pond appeared to be restricted to three bankside locations. The continued presence of P. parva at these locations was confirmed by subsequent trapping. Water samples from an adjacent, unconnected stream were also analysed using the eDNA methodology, but no DNA of P. parva was detected. The results suggest that further management action to eradicate P. parva be focused on the pond shown to contain the isolated P. parva population and thereby eliminate the risk of further dispersal. This study is the first to apply eDNA analysis to assess the efficacy of an eradication attempt and to provide evidence that the species was unlikely to be present in the other ponds, thus reducing the resources needed to control the species.

Application of environmental DNA analysis to inform invasive fish eradication operations.

PubMed

Davison, Phillip I; Copp, Gordon H; Créach, Véronique; Vilizzi, Lorenzo; Britton, J R

2017-04-01

Environmental DNA (eDNA) detection of non-native species has considerable potential to inform management decisions, including identifying the need for population control and/or eradication. An invasive species of European concern is the Asian cyprinid fish, topmouth gudgeon (Pseudorasbora parva). Here, eDNA analyses were applied at a commercial angling venue in southern England to inform operations aiming to eradicate P. parva, which had only ever been observed in one of the venue's seven unconnected angling ponds. Eradication of P. parva was initially attempted by repeated depletion of the population using fish traps (crayfish traps fitted with 5 mm mesh netting) and the introduction of native predators over a 4-year period. The very low number of P. parva captured following these eradication efforts suggested a possible population crash. Conventional PCR analysis of water samples using species-specific primers was applied to all seven ponds to confirm that P. parva was present in only one pond, that the eradication attempt had indeed failed and that the species' distribution in the pond appeared to be restricted to three bankside locations. The continued presence of P. parva at these locations was confirmed by subsequent trapping. Water samples from an adjacent, unconnected stream were also analysed using the eDNA methodology, but no DNA of P. parva was detected. The results suggest that further management action to eradicate P. parva be focused on the pond shown to contain the isolated P. parva population and thereby eliminate the risk of further dispersal. This study is the first to apply eDNA analysis to assess the efficacy of an eradication attempt and to provide evidence that the species was unlikely to be present in the other ponds, thus reducing the resources needed to control the species.

50 CFR 300.64 - Fishing by U.S. treaty Indian tribes.

Code of Federal Regulations, 2012 CFR

2012-10-01

... 50 Wildlife and Fisheries 11 2012-10-01 2012-10-01 false Fishing by U.S. treaty Indian tribes. 300... FISHERIES REGULATIONS Pacific Halibut Fisheries § 300.64 Fishing by U.S. treaty Indian tribes. (a) Halibut fishing in subarea 2A-1 by members of U.S. treaty Indian tribes located in the State of Washington is...

50 CFR 300.64 - Fishing by U.S. treaty Indian tribes.

Code of Federal Regulations, 2013 CFR

2013-10-01

... 50 Wildlife and Fisheries 11 2013-10-01 2013-10-01 false Fishing by U.S. treaty Indian tribes. 300... FISHERIES REGULATIONS Pacific Halibut Fisheries § 300.64 Fishing by U.S. treaty Indian tribes. (a) Halibut fishing in subarea 2A-1 by members of U.S. treaty Indian tribes located in the State of Washington is...

50 CFR 300.64 - Fishing by U.S. treaty Indian tribes.

Code of Federal Regulations, 2014 CFR

2014-10-01

... 50 Wildlife and Fisheries 11 2014-10-01 2014-10-01 false Fishing by U.S. treaty Indian tribes. 300... FISHERIES REGULATIONS Pacific Halibut Fisheries § 300.64 Fishing by U.S. treaty Indian tribes. (a) Halibut fishing in subarea 2A-1 by members of U.S. treaty Indian tribes located in the State of Washington is...

MERCURY CONCENTRATIONS IN SKELETAL MUSCLE OF FISH FROM LAKE MEAD, USA, RELATED TO FISH SIZE, CONDITION, TROPHIC LEVEL, LOCATION, AND CONSUMPTION RISK

EPA Science Inventory

In this first large-scale study of mercury (Hg) in Lake Mead, USA, the nation's largest man-
made reservoir, total-Hg concentrations were determined in the skeletal muscle of 339 fish collected during the Fall of 1998 and the Spring of 1999. Five species of fish representing ...

Can personality predict individual differences in brook trout spatial learning ability?

USGS Publications Warehouse

White, S.L.; Wagner, Tyler; Gowan, C.; Braithwaite, V.A.

2017-01-01

While differences in individual personality are common in animal populations, understanding the ecological significance of variation has not yet been resolved. Evidence suggests that personality may influence learning and memory; a finding that could improve our understanding of the evolutionary processes that produce and maintain intraspecific behavioural heterogeneity. Here, we tested whether boldness, the most studied personality trait in fish, could predict learning ability in brook trout. After quantifying boldness, fish were trained to find a hidden food patch in a maze environment. Stable landmark cues were provided to indicate the location of food and, at the conclusion of training, cues were rearranged to test for learning. There was a negative relationship between boldness and learning as shy fish were increasingly more successful at navigating the maze and locating food during training trials compared to bold fish. In the altered testing environment, only shy fish continued using cues to search for food. Overall, the learning rate of bold fish was found to be lower than that of shy fish for several metrics suggesting that personality could have widespread effects on behaviour. Because learning can increase plasticity to environmental change, these results have significant implications for fish conservation.

Genotoxic Potential and Physicochemical Parameters of Sinos River, Southern Brazil

PubMed Central

Scalon, Madalena C. S.; Rechenmacher, Ciliana; Siebel, Anna Maria; Kayser, Michele L.; Rodrigues, Manoela T.; Maluf, Sharbel W.; Rodrigues, Marco Antonio S.

2013-01-01

The present study aimed to evaluate the physicochemical parameters and the genotoxic potential of water samples collected in the upper, middle, and lower courses of the Sinos River, southern Brazil. The comet assay was performed in the peripheral blood of fish Hyphessobrycon luetkenii exposed under laboratory conditions to water samples collected in summer and winter in three sampling sites of Sinos River. Water quality analysis demonstrated values above those described in Brazilian legislation in Parobé and Sapucaia do Sul sites, located in the middle and in the lower courses of the Sinos River, respectively. The Caraá site, located in the upper river reach, presented all the physicochemical parameters in accordance with the allowed limits in both sampling periods. Comet assay in fish revealed genotoxicity in water samples collected in the middle course site in summer and in the three sites in winter when compared to control group. Thus, the physicochemical parameters indicated that the water quality of the upper course complies with the limits set by the national guidelines, and the ecotoxicological assessment, however, indicated the presence of genotoxic agents. The present study highlights the importance of combining water physicochemical analysis and bioassays to river monitoring. PMID:24285934

Genetic Structure of Pacific Trout at the Extreme Southern End of Their Native Range

PubMed Central

Abadía-Cardoso, Alicia; Garza, John Carlos; Mayden, Richard L.; García de León, Francisco Javier

2015-01-01

Salmonid fishes are cold water piscivores with a native distribution spanning nearly the entire temperate and subarctic northern hemisphere. Trout in the genus Oncorhynchus are the most widespread salmonid fishes and are among the most important fish species in the world, due to their extensive use in aquaculture and valuable fisheries. Trout that inhabit northwestern Mexico are the southernmost native salmonid populations in the world, and the least studied in North America. They are unfortunately also facing threats to their continued existence. Previous work has described one endemic species, the Mexican golden trout (O. chrysogaster), and one endemic subspecies, Nelson’s trout (O. mykiss nelsoni), in Mexico, but previous work indicated that there is vastly more biodiversity in this group than formally described. Here we conducted a comprehensive genetic analysis of this important group of fishes using novel genetic markers and techniques to elucidate the biodiversity of trout inhabiting northwestern Mexico, examine genetic population structure of Mexican trout and their relationships to other species of Pacific trout, and measure introgression from non-native hatchery rainbow trout. We confirmed substantial genetic diversity and extremely strong genetic differentiation present in the Mexican trout complex, not only between basins but also between some locations within basins, with at least four species-level taxa present. We also revealed significant divergence between Mexican trout and other trout species and found that introgression from non-native rainbow trout is present but limited, and that the genetic integrity of native trout is still maintained in most locations. This information will help to guide effective conservation strategies for this important group of fishes. PMID:26509445

Important biological activities induced by Thalassophryne maculosa fish venom.

PubMed

Sosa-Rosales, Josefina Ines; Piran-Soares, Ana Amélia; Farsky, Sandra H P; Takehara, Harumi Ando; Lima, Carla; Lopes-Ferreira, Mônica

2005-02-01

The accidents caused by Thalassophryne maculosa fish venoms are frequent and represent a public health problem in some regions of Venezuela. Most accidents occur in the fishing communities and tourists. The clinical picture is characterized by severe pain, dizziness, fever, edema, and necrosis. Due to the lack of efficient therapy it may take weeks, or even months for complete recovery of the victims. The investigations presented here were undertaken to assess the eletrophoretical profile and principal biological properties of the T. maculosa venom. Venom obtained from fresh captured specimens of this fish was tested in vitro or in animal models for a better characterization of its toxic activities. In contrast to other fish venoms, T. maculosa venom showed relative low LD50. The injection of venom in the footpad of mice reproduced a local inflammatory lesion similar to that described in humans. Significant increase of the nociceptive and edematogenic responses was observed followed within 48 h by necrosis. Pronounced alterations on microvascular hemodynamics were visualized after venom application. These alterations were represented by fibrin depots and thrombus formation followed by complete venular stasis and transient arteriolar contraction. T. maculosa venom is devoid of phospholipase A2 activity, but the venom showed proteolytic and myotoxic activities. SDS-Page analysis of the crude venom showed important bands: one band located above 97 M(w), one band between 68 and 97 M(w), one major band between 29 and 43 M(w) and the last one located below 18.4 M(w) Then, the results presented here support that T. maculosa venom present a mixture of bioactive toxins involved in a local inflammatory lesion.

Methods for Monitoring Fish Communities of Buffalo National River and Ozark National Scenic Riverways in the Ozark Plateaus of Arkansas and Missouri: Version 1.0

USGS Publications Warehouse

Petersen, James C.; Justus, B.G.; Dodd, H.R.; Bowles, D.E.; Morrison, L.W.; Williams, M.H.; Rowell, G.A.

2008-01-01

Buffalo National River located in north-central Arkansas, and Ozark National Scenic Riverways, located in southeastern Missouri, are the two largest units of the National Park Service in the Ozark Plateaus physiographic province. The purpose of this report is to provide a protocol that will be used by the National Park Service to sample fish communities and collect related water-quality, habitat, and stream discharge data of Buffalo National River and Ozark National Scenic Riverways to meet inventory and long-term monitoring objectives. The protocol includes (1) a protocol narrative, (2) several standard operating procedures, and (3) supplemental information helpful for implementation of the protocol. The protocol narrative provides background information about the protocol such as the rationale of why a particular resource or resource issue was selected for monitoring, information concerning the resource or resource issue of interest, a description of how monitoring results will inform management decisions, and a discussion of the linkages between this and other monitoring projects. The standard operating procedures cover preparation, training, reach selection, water-quality sampling, fish community sampling, physical habitat collection, measuring stream discharge, equipment maintenance and storage, data management and analysis, reporting, and protocol revision procedures. Much of the information in the standard operating procedures was gathered from existing protocols of the U.S. Geological Survey National Water Quality Assessment program or other sources. Supplemental information that would be helpful for implementing the protocol is included. This information includes information on fish species known or suspected to occur in the parks, sample sites, sample design, fish species traits, index of biotic integrity metrics, sampling equipment, and field forms.

Spatial analysis of polybrominated diphenylethers (PBDEs) and polybrominated biphenyls (PBBs) in fish collected from UK and proximate marine waters.

PubMed

Zhihua, Li; Panton, S; Marshall, Lisa; Fernandes, A; Rose, M; Smith, F; Holmes, Mel

2018-03-01

Some commonly consumed marine fish species are considered to display a higher risk of bio-accumulating organic environmental contaminants such as PBDEs. As part of a study to investigate the spatial distribution of these contaminants, data on polybrominated diphenlyethers (PBDEs) and polybrominated biphenyls (PBBs) were collected and analysed by introducing a web-based resource which enables efficient spatial, species and concentration level representations. Furthermore, hierarchical cluster analyses permits correlations within the data to be predicted. The data provide current information on levels of PBDE and PBB occurrence, allowing identification of locations that show higher contaminant levels. 135 fish samples of various species were analysed from UK marine waters, but encompassing the waters around Norway in the North and to the Algarve in the South. PBDEs were observed in all samples with the majority of measured congeners being detected. The concentrations ranged from 0.087 μg/kg to 8.907 μg/kg whole weight (ww) for the sum of all measured PBDE congeners. PBBs occurred less frequently showing a corresponding range of <0.02 μg/kg to 0.97 μg/kg ww for the sum of seven PBB congeners. Concentrations vary depending on species and locations where landed, e.g. PBBs occurred more frequently and at higher levels in grey mullet from French waters. The high frequency of PBDE occurrence makes it prudent to continue the monitoring of these commonly consumed marine fish species. The web-based resource provides a flexible and efficient tool for assessors and policy-makers to monitor and evaluate levels within caught fish species improving evidenced-based decision processes. Copyright © 2017 Elsevier Ltd. All rights reserved.

Proteocephalus brooksi n. sp. (Cestoda:Proteocephalidae) in the neotropical freshwater fish Rhamdia guatemalensis (Siluriformes: Pimelodidae) from Lake Catemaco, Veracruz, Mexico.

PubMed

García-Prieto, L; Rodríguez, L M; Pérez-Ponce de León, G

1996-12-01

Proteocephalus brooksi n. sp. is described from the neotropical pimelodid fish Rhamdia guatemalensis from Lake Catemaco, Veracruz, México. The new species is characterized by the "paramuscular" position of vitellaria, the cortical origin of uterine stem with development of medullar lateral branches, the alternated position of vagina (anteriorly and posteriorly to cirrus sac), and the absence of apical organ and vaginal sphincter. Proteocephalus brooksi most closely resembles Nomimoscolex matogrossensis from which it differs in a series of characters. The probable paraphyletic nature of both Proteocephalus and Nomimoscolex and the convergent evolution of the "paramuscular" location of vitellaria among proteocephalideans are suggested, and the need for a phylogenetic analysis of the group is emphasized. The new species is assigned to Proteocephalus pending such an analysis.

Differential Response of Fish Assemblages to Coral Reef-Based Seaweed Farming

PubMed Central

Hehre, E. James; Meeuwig, J. J.

2015-01-01

As the global demand for seaweed-derived products drives the expansion of seaweed farming onto shallow coral ecosystems, the effects of farms on fish assemblages remain largely unexplored. Shallow coral reefs provide food and shelter for highly diverse fish assemblages but are increasingly modified by anthropogenic activities. We hypothesized that the introduction of seaweed farms into degraded shallow coral reefs had potential to generate ecological benefits for fish by adding structural complexity and a possible food source. We conducted 210 transects at 14 locations, with sampling stratified across seaweed farms and sites adjacent to and distant from farms. At a seascape scale, locations were classified by their level of exposure to human disturbance. We compared sites where (1) marine protected areas (MPAs) were established, (2) neither MPAs nor blast fishing was present (hence “unprotected”), and (3) blast fishing occurred. We observed 80,186 fish representing 148 species from 38 families. The negative effects of seaweed farms on fish assemblages appeared stronger in the absence of blast fishing and were strongest when MPAs were present, likely reflecting the positive influence of the MPAs on fish within them. Species differentiating fish assemblages with respect to seaweed farming and disturbance were typically small but also included two key target species. The propensity for seaweed farms to increase fish diversity, abundance, and biomass is limited and may reduce MPA benefits. We suggest that careful consideration be given to the placement of seaweed farms relative to MPAs. PMID:25822342

Differential response of fish assemblages to coral reef-based seaweed farming.

PubMed

Hehre, E James; Meeuwig, J J

2015-01-01

As the global demand for seaweed-derived products drives the expansion of seaweed farming onto shallow coral ecosystems, the effects of farms on fish assemblages remain largely unexplored. Shallow coral reefs provide food and shelter for highly diverse fish assemblages but are increasingly modified by anthropogenic activities. We hypothesized that the introduction of seaweed farms into degraded shallow coral reefs had potential to generate ecological benefits for fish by adding structural complexity and a possible food source. We conducted 210 transects at 14 locations, with sampling stratified across seaweed farms and sites adjacent to and distant from farms. At a seascape scale, locations were classified by their level of exposure to human disturbance. We compared sites where (1) marine protected areas (MPAs) were established, (2) neither MPAs nor blast fishing was present (hence "unprotected"), and (3) blast fishing occurred. We observed 80,186 fish representing 148 species from 38 families. The negative effects of seaweed farms on fish assemblages appeared stronger in the absence of blast fishing and were strongest when MPAs were present, likely reflecting the positive influence of the MPAs on fish within them. Species differentiating fish assemblages with respect to seaweed farming and disturbance were typically small but also included two key target species. The propensity for seaweed farms to increase fish diversity, abundance, and biomass is limited and may reduce MPA benefits. We suggest that careful consideration be given to the placement of seaweed farms relative to MPAs.

238,234U contents on Lepomis Cyanellus from San Marcos dam located in a uraniferous area

NASA Astrophysics Data System (ADS)

Lares, Magaly Cabral; Luna-Porres, Mayra Y.; Montero-Cabrera, María E.; Renteria-Villalobos, Marusia

2014-07-01

Fish species are suitable biomonitors of radioisotopes in aquatic systems. In the present study, it was made the determination of uranium isotopic contents on fish fillet (Lepomis Cyanellus) from San Marcos dam which is located in uranium mineralized zone. Uranium activity concentrations (AC) in fish samples were obtained on wet weight (ww), using liquid scintillation. 238U and 234U AC in fish fillet ranged from 0.0004 to 0.0167 Bq kg-1, and from 0.0013 to 0.0394 Bq kg-1, respectively. The activity ratio (234U/overflow="scroll">238U) in fish fillet ranged from 2.2 to 8.8. Lepomis cyanellus from San Marcos dam shows bioaccumulation factor (FB) of 0.6 L kg-1. The results suggest that the Lepomis Cyanellus in environments with high U contents tends to have a greater bioaccumulation compared to others.

Cytogenetic Analysis of Populus trichocarpa - Ribosomal DNA, Telomere Repeat Sequence, and Marker-selected BACs

DOE Office of Scientific and Technical Information (OSTI.GOV)

Tuskan, Gerald A; Gunter, Lee E; DiFazio, Stephen P

The 18S-28S rDNA and 5S rDNA loci in Populus trichocarpa were localized using fluorescent in situ hybridization (FISH). Two 18S-28S rDNA sites and one 5S rDNA site were identified and located at the ends of 3 different chromosomes. FISH signals from the Arabidopsis -type telomere repeat sequence were observed at the distal ends of each chromosome. Six BAC clones selected from 2 linkage groups based on genome sequence assembly (LG-I and LG-VI) were localized on 2 chromosomes, as expected. BACs from LG-I hybridized to the longest chromosome in the complement. All BAC positions were found to be concordant with sequencemore » assembly positions. BAC-FISH will be useful for delineating each of the Populus trichocarpa chromosomes and improving the sequence assembly of this model angiosperm tree species.« less

Levels of nutrients in relation to fish consumption among older male anglers in Wisconsin.

PubMed

Christensen, Krista Y; Thompson, Brooke A; Werner, Mark; Malecki, Kristen; Imm, Pamela; Anderson, Henry A

2015-10-01

Fish is an important source of nutrients including omega-3 fatty acids, which may reduce risk of adverse health outcomes such as cardiovascular disease; however, fish may also contain significant amounts of environmental pollutants. The Wisconsin Departments of Health Services and Natural Resources developed a survey instrument, along with a strategy to collect human biological samples to assess the risks and benefits associated with long-term fish consumption among older male anglers in Wisconsin. The target population was men aged 50 years and older, who fish Wisconsin waters and live in the state of Wisconsin. Participants provided blood and hair samples and completed a detailed (paper) questionnaire, which included questions on basic demographics, health status, location of catch and species of fish caught/eaten, consumption of locally caught and commercially purchased fish, and awareness and source of information for local and statewide consumption guidelines. Biological samples were used to assess levels of docosahexaenoic acid (DHA), docosapentaenoic acid (DPA), eicosapentaenoic acid (EPA); vitamin D; and selenium in blood. Quantile regression analysis was used to investigate the associations between biomarker levels and self-reported consumption of fish from the Great Lakes and other areas of concern, other locally caught fish, and commercially purchased fish (meals per year). Respondents were largely non-Hispanic white men in their 60's with at least some college education, and about half were retired. Fish consumption was high (median of 54.5 meals per year), with most fish meals coming from locally-caught fish. Multivariate regression models showed that the effect of supplement use was much greater than that of fish consumption, on nutrient levels, although consumption of fish from the Great Lakes and areas of concern was significantly associated with higher levels of vitamin D even after controlling for supplement usage. Published by Elsevier Inc.

Levels of nutrients in relation to fish consumption among older male anglers in Wisconsin

PubMed Central

Christensen, Krista Y.; Thompson, Brooke A.; Werner, Mark; Malecki, Kristen; Imm, Pamela; Anderson, Henry A.

2016-01-01

Fish are an important source of nutrients including omega-3 fatty acids, which may reduce risk of adverse health outcomes such as cardiovascular disease; however, fish may also contain significant amounts of environmental pollutants. The Wisconsin Departments of Health Services and Natural Resources developed a survey instrument, along with a strategy to collect human biological samples to assess the risks and benefits associated with long-term fish consumption among older male anglers in Wisconsin. The target population was men aged 50 years and older, who fish Wisconsin waters and live in the state of Wisconsin. Participants provided blood and hair samples and completed a detailed (paper) questionnaire, which included questions on basic demographics, health status, location of catch and species of fish caught/eaten, consumption of locally caught and commercially purchased fish, and awareness and source of information for local and statewide consumption guidelines. Biological samples were used to assess levels of docosahexaenoic acid (DHA), docosapentaenoic acid (DPA), eicosapentaenoic acid (EPA); vitamin D; and selenium in blood. Quantile regression analysis was used to investigate the associations between biomarker levels and self-reported consumption of fish from the Great Lakes and other areas of concern, other locally caught fish, and commercially purchased fish (meals per year). Respondents were largely non-Hispanic white men in their 60’s with at least some college education, and about half were retired. Fish consumption was high (median of 54.5 meals per year), with most fish meals coming from locally-caught fish. Multivariate regression models showed that the effect of supplement use was much greater than that of fish consumption, on nutrient levels, although consumption of fish from the Great Lakes and areas of concern was significantly associated with higher levels of vitamin D even after controlling for supplement usage. PMID:26296180

76 FR 44304 - Submission for OMB Review; Comment Request

Federal Register 2010, 2011, 2012, 2013, 2014

2011-07-25

... (tunas, sharks, swordfish, and billfish). Archival tags collect location, temperature, and water depth data that is useful for scientists researching the movements and behavior of individual fish. It is... tagged fish are exempted from other normally applicable regulations (i.e., immediate release of the fish...

Demographic patterns in the peacock grouper (Cephalopholis argus), an introduced Hawaiian reef fish

USGS Publications Warehouse

Donovan, Mary K.; Friedlander, Alan M.; DeMartini, Edward E.; Donahue, Megan J.; Williams, Ivor D.

2013-01-01

This study took advantage of a unique opportunity to collect large sample sizes of a coral reef fish species across a range of physical and biological features of the Hawaiian Archipelago to investigate variability in the demography of an invasive predatory coral reef fish, Cephalopholis argus (Family: Epinephelidae). Age-based demographic analyses were conducted at 10 locations in the main Hawaiian Islands and estimates of weight-at-length, size-at-age, and longevity were compared among locations. Each metric differed among locations, although patterns were not consistent across metrics. Length-weight relationships for C. argus differed among locations and individuals weighed less at a given length at Hilo, the southernmost location studied. Longevity differed among and within islands and was greater at locations on Maui and Hawaii compared to the more northern locations on Oahu and Kauai. Within-island growth patterns differed at Kauai, Oahu, and Hawaii. This work provides a case study of fundamental life history information from distant and/or spatially limited locations that are critical for developing robust fishery models. The differences observed both among and within islands indicate that variability may be driven by cross-scale mechanisms that need to be considered in fisheries stock assessments and ecosystem-based management.

Determination of toxins involved in ciguatera fish poisoning in the Pacific by LC/MS.

PubMed

Yogi, Kentaro; Sakugawa, Satsuki; Oshiro, Naomasa; Ikehara, Tsuyoshi; Sugiyama, Kiminori; Yasumoto, Takeshi

2014-01-01

Ciguatera fish poisoning is the most extensive and difficult to control of the seafood poisonings. To facilitate monitoring of fish toxicity, toxin profiles were investigated by an LC/MS/MS method using 14 reference toxins on eight representative species of fish collected in four different areas of the Pacific. Snappers and groupers from Okinawa contained ciguatoxin-1B (CTX1B) and two deoxy congeners at variable but species-specific ratios, while red snapper, Lutjanus bohar, from Minamitorishima, and amberjack, Seriola dumerili, from Hawaii, contained both CTX1B-type and CTX3C-type toxins. Spotted knifejaw, Oplegnathus punctatus, from Okinawan waters, contained mainly CTX4A and CTX4B, but the same species caught at Miyazaki was contaminated primarily with the CTX3C-type toxins. Otherwise, the toxin profiles were consistently species-specific in fish collected from various locations around Okinawa over 20 years. The LC/MS/MS and mouse bioassay results agreed well, indicating the LC/MS/MS method is a promising alternative to the mouse bioassay. Pure CTX1B and CTX3C were prepared for use in future LC/MS/MS analysis.

How Nemo finds home: the neuroecology of dispersal and of population connectivity in larvae of marine fishes.

PubMed

Leis, Jeffrey M; Siebeck, Ulrike; Dixson, Danielle L

2011-11-01

Nearly all demersal teleost marine fishes have pelagic larval stages lasting from several days to several weeks, during which time they are subject to dispersal. Fish larvae have considerable swimming abilities, and swim in an oriented manner in the sea. Thus, they can influence their dispersal and thereby, the connectivity of their populations. However, the sensory cues marine fish larvae use for orientation in the pelagic environment remain unclear. We review current understanding of these cues and how sensory abilities of larvae develop and are used to achieve orientation with particular emphasis on coral-reef fishes. The use of sound is best understood; it travels well underwater with little attenuation, and is current-independent but location-dependent, so species that primarily utilize sound for orientation will have location-dependent orientation. Larvae of many species and families can hear over a range of ~100-1000 Hz, and can distinguish among sounds. They can localize sources of sounds, but the means by which they do so is unclear. Larvae can hear during much of their pelagic larval phase, and ontogenetically, hearing sensitivity, and frequency range improve dramatically. Species differ in sensitivity to sound and in the rate of improvement in hearing during ontogeny. Due to large differences among-species within families, no significant differences in hearing sensitivity among families have been identified. Thus, distances over which larvae can detect a given sound vary among species and greatly increase ontogenetically. Olfactory cues are current-dependent and location-dependent, so species that primarily utilize olfactory cues will have location-dependent orientation, but must be able to swim upstream to locate sources of odor. Larvae can detect odors (e.g., predators, conspecifics), during most of their pelagic phase, and at least on small scales, can localize sources of odors in shallow water, although whether they can do this in pelagic environments is unknown. Little is known of the ontogeny of olfactory ability or the range over which larvae can localize sources of odors. Imprinting on an odor has been shown in one species of reef-fish. Celestial cues are current- and location-independent, so species that primarily utilize them will have location-independent orientation that can apply over broad scales. Use of sun compass or polarized light for orientation by fish larvae is implied by some behaviors, but has not been proven. Use of neither magnetic fields nor direction of waves for orientation has been shown in marine fish larvae. We highlight research priorities in this area. © The Author 2011. Published by Oxford University Press on behalf of the Society for Integrative and Comparative Biology. All rights reserved.

The Effect of Mangrove on Fish Catch Using Belat at Teluk Pemedas and Sanipah of Kutai Kartanegara Regency, East Kalimantan Province, Indonesia

NASA Astrophysics Data System (ADS)

Sulaiman, Bustam; Bambang, Azis Nur; Purnaweni, Hartuti; Lutfi, Mohammad

2018-02-01

The increasing population at Teluk Pemedas and Sanipah coastal areas of Kutai Kartanegara Regency, East Kalimantan Province, has led to coastal degradation. The problem was mainly caused by conversion of mangrove into aquaculture, agriculture, plantation industrial, and residential areas. This research was a study case, used descriptive analysis to describe the local fishermen activity using belat traditional device to catch fish. The results revealed that there were many fishermen still did not know the benefits of mangrove for economy growth, ecological, ecotourism etc. This condition affects to the decline of the mangrove function. Fisherman who used belat often move from one location to another location in order to find places that have many catches. The belat which are placed in good environment mangrove areas produces lots of catches that greatly benefit the fisherman, therefore mangrove ecosystem must be well preserved for the sustainability of fishermen's efforts to earn a living.

A Multivariate Analysis of Metal Concentrations in Two Fish Species of the Nyl River System, Limpopo Province, South Africa.

PubMed

Musa, R; Gerber, R; Greenfield, R

2017-06-01

Increased toxicity due to high metal concentrations may hinder the ecological integrity of aquatic ecosystems in sustaining life. The non-biodegradable nature of metals may result in bioaccumulation in aquatic organisms. Due to ecological and social aspects it is imperative for monitoring schemes to identify possible impacts to the systems integrity. This paper discusses accumulation patterns of seven metals (Al, Cr, Cu, Fe, Mn, Sr and Zn) in tissues of two fish species, namely Clarias gariepinus and Oreochromis mossambicus at two selected sites, the first located upstream of Modimolle (NRS1), and the second located downstream of the town (NRS2). Gills, liver, muscle and skin tissues were analysed for metal concentrations using standard microwave digestion and inductively coupled plasma mass spectrometry techniques. Statistical results indicated higher concentrations of metals at NRS2 in comparison to NRS1, indicating that Modimolle plays a potential role in introducing metals into the aquatic system.

Ecological risk of methylmercury to piscivorous fish of the Great Lakes region.

PubMed

Sandheinrich, Mark B; Bhavsar, Satyendra P; Bodaly, R A; Drevnick, Paul E; Paul, Eric A

2011-10-01

Contamination of fish populations with methylmercury is common in the region of the Laurentian Great Lakes as a result of atmospheric deposition and methylation of inorganic mercury. Using fish mercury monitoring data from natural resource agencies and information on tissue concentrations injurious to fish, we conducted a screening-level risk assessment of mercury to sexually mature female walleye (Sander vitreus), northern pike (Esox lucius), smallmouth bass (Micropterus dolomieu), and largemouth bass (Micropterus salmoides) in the Great Lakes and in interior lakes, impoundments, and rivers of the Great Lakes region. The assessment included more than 43,000 measurements of mercury in fish from more than 2000 locations. Sexually mature female fish that exceeded threshold-effect tissue concentrations of 0.20 μg g(-1) wet weight in the whole body occurred at 8% (largemouth bass) to 43% (walleye) of sites. Fish at 3% to 18% of sites were at risk of injury and exceeded 0.30 μg g(-1) where an alteration in reproduction or survival is predicted to occur. Most fish at increased risk were from interior lakes and impoundments. In the Great Lakes, no sites had sexually mature fish that exceeded threshold-effect concentrations. Results of this screening-level assessment indicate that fish at a substantive number of locations within the Great Lakes region are potentially at risk from methylmercury contamination and would benefit from reduction in mercury concentrations.

Identification and Lagrangian analysis of oceanographic structures favorable for fishery of neon flying squid ( Ommastrephes bartramii) in the South Kuril area

NASA Astrophysics Data System (ADS)

Budyansky, M. V.; Prants, S. V.; Samko, E. V.; Uleysky, M. Yu.

2017-09-01

Based on the AVISO velocity field, we compute daily synoptic Lagrangian maps in the South Kuril area for the fishery seasons of 1998, 1999, and 2001-2005 from available catching data on neon flying squid (NFS). With the help of drift maps for artificial particles, we found that the majority of NFS fishing grounds featuring maximum catches are situated near large-scale Lagrangian intrusions: tongues of water penetrating the surrounding water of other Lagrangian properties. It is shown that the NFS catch locations tend to accumulate at places where waters with different magnitudes of certain Lagrangian indicators converge, mix, and produce filaments, swirls, and tendrils typical of chaotic advection. Potential NFS fishing grounds are mainly located near (1) Lagrangian intrusions of the Subarctic front, (2) intrusions of Okhotsk Sea and Oyashio waters around mesoscale anticyclones east of Hokkaido with subsequent penetration of catch locations inside eddies and (3) intrusions of subtropical waters into the central part of the South Kuril area due to interaction with eddies of different size and polarity. Possible reasons for increased biological production and fishery in the vicinity of Lagrangian intrusions are discussed.

Impacts of fishing and environmental factors driving changes on littoral fish assemblages in a subtropical oceanic island

NASA Astrophysics Data System (ADS)

Sangil, Carlos; Martín-García, Laura; Hernández, José Carlos; Concepción, Laura; Fernández, Raúl; Clemente, Sabrina

2013-08-01

The structure of demersal fish assemblages of commercial interest was studied at 51 sites on La Palma Island (Canary Islands, northeastern Atlantic). On this island, demersal fish populations are limited and independent from other islands. As deep water separates the islands and the shallow sublittoral platforms are not continuous, adult inter-island migrations are not possible except between the islands of Lanzarote and Fuerteventura. Otherwise, each island functions as a closed system, and the status of an island fish assemblage depends on local environmental conditions and activities performed in situ by the islanders. These circumstances provide a unique opportunity to test the intrainsular variability of fish assemblages. With this background, environmental parameters, fishing pressure and distance to the MPA were considered to identify the main factors explaining the spatial variation of fish assemblages off La Palma Island. Twenty-six fish species were recorded, but 60% of the total fish biomass was represented by only five species (Sparisoma cretense, Pomadasys incisus, Canthidermis sufflamen, Diplodus cervinus cervinus and Bodianus scrofa). However, the structure of assemblages was heterogeneous in response to different variables and showed substantial spatial variation. The assemblages were strongly modified by the presence of upright seaweed cover, fishing activities, and certain environmental variables. Differences were more pronounced in species that occupied the higher trophic levels. The most disturbed assemblages were those located in areas with lower upright seaweed cover and with higher fishing pressure, whereas the best-preserved assemblages corresponded to sites with controlled fishing activities, located within the MPA.

Complete genome sequence of the European sheatfish virus.

PubMed

Mavian, Carla; López-Bueno, Alberto; Fernández Somalo, María Pilar; Alcamí, Antonio; Alejo, Alí

2012-06-01

Viral diseases are an increasing threat to the thriving aquaculture industry worldwide. An emerging group of fish pathogens is formed by several ranaviruses, which have been isolated at different locations from freshwater and seawater fish species since 1985. We report the complete genome sequence of European sheatfish ranavirus (ESV), the first ranavirus isolated in Europe, which causes high mortality rates in infected sheatfish (Silurus glanis) and in other species. Analysis of the genome sequence shows that ESV belongs to the amphibian-like ranaviruses and is closely related to the epizootic hematopoietic necrosis virus (EHNV), a disease agent geographically confined to the Australian continent and notifiable to the World Organization for Animal Health.

Complete Genome Sequence of the European Sheatfish Virus

PubMed Central

Mavian, Carla; López-Bueno, Alberto; Fernández Somalo, María Pilar; Alcamí, Antonio

2012-01-01

Viral diseases are an increasing threat to the thriving aquaculture industry worldwide. An emerging group of fish pathogens is formed by several ranaviruses, which have been isolated at different locations from freshwater and seawater fish species since 1985. We report the complete genome sequence of European sheatfish ranavirus (ESV), the first ranavirus isolated in Europe, which causes high mortality rates in infected sheatfish (Silurus glanis) and in other species. Analysis of the genome sequence shows that ESV belongs to the amphibian-like ranaviruses and is closely related to the epizootic hematopoietic necrosis virus (EHNV), a disease agent geographically confined to the Australian continent and notifiable to the World Organization for Animal Health. PMID:22570241

Survival of juvenile chinook salmon and coho salmon in the Roza Dam fish bypass and in downstream reaches of the Yakima River, Washington, 2016

USGS Publications Warehouse

Kock, Tobias J.; Perry, Russell W.; Hansen, Amy C.

2016-12-22

Estimates of juvenile salmon survival are important data for fishery managers in the Yakima River Basin. Radiotelemetry studies during 2012–14 showed that tagged juvenile Chinook salmon (Oncorhynchus tshawytscha) that passed through the fish bypass at Roza Dam had lower survival than fish that passed through other routes at the dam. That study also identified flow-survival relationships in the reaches between the Roza Dam tailrace and Sunnyside Dam. During 2012–14, survival also was estimated through reaches downstream of Sunnyside Dam, but generally, sample sizes were low and the estimates were imprecise. In 2016, we conducted an evaluation using acoustic cameras and acoustic telemetry to build on information collected during the previous study. The goal of the 2016 research was to identify areas where mortality occurs in the fish bypass at Roza Dam, and to estimate reach-specific survival in reaches downstream of the dam. The 2016 study included juvenile Chinook salmon and coho salmon (O. kisutch).Three acoustic cameras were used to observe fish behavior (1) near the entrances to the fish bypass, (2) at a midway point in the fish bypass (convergence vault), and (3) at the bypass outfall. In total, 504 hours of acoustic camera footage was collected at these locations. We determined that smolt-sized fish (95–170 millimeters [mm]) were present in the highest proportions at each location, but predator-sized fish (greater than 250 mm) also were present at each site. Fish presence generally peaked during nighttime hours and crepuscular periods, and was low during daytime hours. In the convergence vault, smolt-sized fish exhibited holding behavior patterns, which may explain why some fish delayed while passing through the bypass.Some of the acoustic-tagged fish were delayed in the fish bypass following release, but there was no evidence to suggest that they experienced higher mortality than fish that were released at the bypass outfall or downstream of the dam. Most of the tagged fish that were released in the fish bypass moved downstream and re-entered the river within 12 hours, but 9.8 percent of the Chinook salmon and 15.7 percent of the coho salmon remained in the bypass for 2.5–17.4 days. We developed a set of models for Chinook salmon and coho salmon and used model selection to determine if release site was an important predictor of survival of tagged fish. The models that provided the best fit to the Chinook salmon and coho salmon datasets did not include release site as a covariate. Furthermore, survival estimates for groups of fish from the various release sites were nearly identical for both species. Based on these observations, it appears that passage through the fish bypass did not result in increased mortality relative to groups of fish released downstream of the bypass.Juvenile Chinook salmon migrated downstream faster than juvenile coho salmon and survival for each species varied with release timing. Median travel time from release at Roza Dam to arrival at a detection gate located at river kilometer (rkm) 527.8 on the Columbia River was 15.4 days for Chinook salmon and 37.4 days for coho salmon. Cumulative survival from Roza Dam to the Columbia River detection gate ranged from 0.299 to 0.678 for Chinook salmon, and from 0.321 to 0.627 for coho salmon. Survival was highest for both species when tagged fish were released in mid-April and lowest when tagged fish were released in early-May. Reach-specific survival estimates were standardized to create estimates that described survival per 100 rkm, which showed that survival was very low (less than 0.500) for some release groups, particularly in the Roza, Sunnyside, and Chandler diversion reaches. A more extensive analysis of reach-specific survival is planned for this dataset, which should provide insights into covariates that affected survival during 2016.

Percent Stomach Emptiness in Fish Collections: Sources of Variation and Study Design Implications

EPA Science Inventory

We summarized fish stomach content data from 369,000 fish from 402 species in 1,096 collections made between 1925 and 2009 and report on the percentage of individuals with empty stomachs (PES). The mean PES among all species, locations, habitats, dates, and collection methods was...

SIMPLE EMPIRICAL RISK RELATIONSHIPS BETWEEN FISH ASSEMBLAGES, HABITAT AND WATER QUALITY IN OHIO

EPA Science Inventory

To assess the condition of its streams, fish, habitat and water quality data were collected from 1980 to 1998 by the Ohio Environmental Protection Agency. These data were sorted into 190 time/locations by basin, river mile and year. Eighteen fish community variables and 24 habi...

Space-time cluster analysis of sea lice infestation (Caligus clemensi and Lepeophtheirus salmonis) on wild juvenile Pacific salmon in the Broughton Archipelago of Canada.

PubMed

Patanasatienkul, Thitiwan; Sanchez, Javier; Rees, Erin E; Pfeiffer, Dirk; Revie, Crawford W

2015-06-15

Sea lice infestation levels on wild chum and pink salmon in the Broughton Archipelago region are known to vary spatially and temporally; however, the locations of areas associated with a high infestation level had not been investigated yet. In the present study, the multivariate spatial scan statistic based on a Poisson model was used to assess spatial clustering of elevated sea lice (Caligus clemensi and Lepeophtheirus salmonis) infestation levels on wild chum and pink salmon sampled between March and July of 2004 to 2012 in the Broughton Archipelago and Knight Inlet regions of British Columbia, Canada. Three covariates, seine type (beach and purse seining), fish size, and year effect, were used to provide adjustment within the analyses. The analyses were carried out across the five months/datasets and between two fish species to assess the consistency of the identified clusters. Sea lice stages were explored separately for the early life stages (non-motile) and the late life stages of sea lice (motile). Spatial patterns in fish migration were also explored using monthly plots showing the average number of each fish species captured per sampling site. The results revealed three clusters for non-motile C. clemensi, two clusters for non-motile L. salmonis, and one cluster for the motile stage in each of the sea lice species. In general, the location and timing of clusters detected for both fish species were similar. Early in the season, the clusters of elevated sea lice infestation levels on wild fish are detected in areas closer to the rivers, with decreasing relative risks as the season progresses. Clusters were detected further from the estuaries later in the season, accompanied by increasing relative risks. In addition, the plots for fish migration exhibit similar patterns for both fish species in that, as expected, the juveniles move from the rivers toward the open ocean as the season progresses The identification of space-time clustering of infestation on wild fish from this study can help in targeting investigations of factors associated with these infestations and thereby support the development of more effective sea lice control measures. Copyright © 2015 Elsevier B.V. All rights reserved.

Identification of Potential Fishing Grounds Using Geospatial Technique

NASA Astrophysics Data System (ADS)

Abdullah, Muhammad

2016-07-01

Fishery resources surveys using actual sampling and data collection methods require extensive ship time and sampling time. Informative data from satellite plays a vital role in fisheries application. Satellite Remote Sensing techniques can be used to detect fish aggregation just like visual fish identification ultimately these techniques can be used to predict the potential fishing zones by measuring the parameters which affect the distribution of fishes. Remote sensing is a time saving technique to locate fishery resources along the coast. Pakistan has a continental shelf area of 50,270 km2 and coastline length of 1,120 km. The total maritime zone of Pakistan is over 30 percent of the land area. Fishery plays an important role in the national economy. The marine fisheries sector is the main component, contributing about 57 percent in terms of production. Fishery is the most important economic activity in the villages and towns along the coast, and in most of the coastal villages and settlements it is the sole source of employment and income generation. Fishing by fishermen is done on the sole basis of repeated experiments and collection of information from other fishermen. Often they are in doubt about the location of potential fishing zones. This leads to waste of time and money, adversely affecting fishermen incomes and over or under-exploitation of fishing zones. The main purpose of this study was to map potential fishing grounds by identifying various environmental parameters which impact fish aggregation along the Pakistan coastline. The primary reason of this study is the fact that the fishing communities of Pakistan's coastal regions are extremely poor and lack knowledge of the modern tools and techniques that may be incorporated to enhance their yield and thus, improve their livelihood. Using geospatial techniques in order to accurately map the potential fishing zones based on sea surface temperature (SST) and chlorophyll -a content, in conjunction with active use of GPS navigation systems can go a long way in improving the output of the fishing community. For this study, satellite data of sea surface temperature and chlorophyll-a content product of MODIS aqua 250 meters, 8 day composite was used. Secondary field survey of Fish and Agriculture Organization (FAO) in month of October was used to assist the fish catch, SST and Chlorophyll-a concentration in Exclusive economic zone (EEZ) of Pakistan, The next step was to establish a GIS database of fish catch data along with the geographical coordinates of the catch spot. After that MODIS SST and Chlorophyll-a concentration image of October 2010 was acquired, the product was converted to tiff format and projection applied for further processing. SST and chlorophyll-a images were reclassified using reclassification technique and then SST and chlorophyll-a values were extracted which were then used to overlay on fish catch data to extract best catch. GIS techniques such as suitability analysis was performed which helped to identify the potential fishing zones in the study area. The next step was to acquire local fishermen knowledge by using questionnaires to verify the sites identified for their fish catch potential, after verification the methodology was applied on whole year (2010) comprising of 45 images of MODIS sensor. Final potential fishing grounds maps were generated using satellite and in-situ measurements. Once we accurately identify the fishing areas with a high catch potential, it may be possible to estimate the overall fishing resources of the study area. This study will be an outline for local fisherman and marine fisheries department this will help them to monitor real time mapping of fish aggregation in Pakistan EEZ. Fish is important for food industries and national economy. Thus this study can facilitate the government, investors and stakeholders to design export policies that can eventually help the country economically while not depleting the marine resources. Remotely sensed data can therefore prove to be an economical and time saving method of carrying out analysis for maritime fishing activities. Such studies, if used intelligently can help assure food security to the nation and promote Pakistan's coastal resources in world market.

Lessons Learned on Bioaugmentation of DNAPL Source Zone Areas

DTIC Science & Technology

2007-10-01

but rather have stringers, ganglia or blobs that can create an “effective pool length”. As the leading edge of these discontinuous DNAPL free-phases...terminal restriction fragment length polymorphism (T-RFLP), denaturing gradient gel electrophoresis (DGGE), and fluorescent in situ hybridization ( FISH ...question of interest (e.g. PCR, FISH , DGGE); (ii) sampling location(s); (iii) an appropriate sampling procedure; and (iv) an appropriate sample handling

Evaluating mercury bioaccumulation rates in fish using mark-recapture techniques

NASA Astrophysics Data System (ADS)

Mathews, T.; Surendran Nair, S.; McManamay, R.

2017-12-01

Mercury (Hg) bioaccumulation can be described by models of varying complexity, from the simplified bioconcentration factor which describes the partitioning of contaminants between water and the organism, to more sophisticated models which take into consideration speciation, complexation, and/or bioavailability. At contaminated sites, especially those that are undergoing remediation, it is helpful to have a dynamic framework to identify critical Hg sources and processes, and to predict time scales to recovery. However, understanding the relationship between changes in exposure concentrations and bioaccumulation rates remains a challenge. East Fork Poplar Creek (EFPC) is a Hg-contaminated stream located in East Tennessee. Over the past 30 years, various remediation actions have succeeded in significantly reducing Hg inputs to this stream. One of the major goals of remediation is to reduce Hg bioaccumulation in resident sunfish in order to meet human health guidelines. Mercury is measured in sunfish fillets bi-annually at various sites along the stream. Because Hg analysis requires only 100 mg of tissue, fish can be sampled non-lethally and released at the site of capture. Since 2008, passive induced transponder (PIT) tags have been used to identify individual fish that are collected from EFPC for Hg analysis. Approximately 10% of PIT tagged fish were recaptured, allowing for the measurement of growth rates and Hg bioaccumulation rates in individual fish. While traditional biomonitoring studies conducted in EFPC have found that the average Hg concentrations in sacrificed fish have not responded to changes in aqueous Hg concentrations over the past 10 years, data from the mark-recapture study show that individual fish may respond to changes in aqueous inorganic Hg concentrations on shorter time scales. Rapid changes in aqueous Hg concentrations over a four year period resulted in measurable increases and decreases in Hg concentrations in individual fish that could not be explained by growth dilution. These findings are relevant to remediation decisions in EFPC and other Hg-contaminated sites.

An ecological model of the Northern and Central Adriatic Sea: Analysis of ecosystem structure and fishing impacts

NASA Astrophysics Data System (ADS)

Coll, Marta; Santojanni, Alberto; Palomera, Isabel; Tudela, Sergi; Arneri, Enrico

2007-08-01

A trophic mass-balance model was developed to characterise the food web structure and functioning of the Northern and Central Adriatic Sea and to quantify the ecosystem impacts of fishing during the 1990s. Forty functional groups were described, including target and non-target fish and invertebrate groups, and three detritus groups (natural detritus, discards and by-catch of cetaceans and marine turtles). Results highlighted that there was an important coupling between pelagic-benthic production of plankton, benthic invertebrates and detritus. Organisms located at low and medium trophic levels, (i.e. benthic invertebrates, zooplankton and anchovy), as well as dolphins, were identified as keystone groups of the ecosystem. Jellyfish were an important element in terms of consumption and production of trophic flows within the ecosystem. The analysis of trophic flows of zooplankton and detritus groups indirectly underlined the importance of the microbial food web in the Adriatic Sea. Fishing activities inflicted notable impacts on the ecosystem during the 1990s, with a high gross efficiency of the fishery, a high consumption of fishable production, high exploitation rates for various target and non target species, a low trophic level of the catch and medium values of primary production required to sustain the fishery. Moreover, the analysis of Odum's ecological indicators highlighted that the ecosystem was in a low-medium developmental stage. Bottom trawling ( Strascico), mid-water trawling ( Volante) and beam trawling ( Rapido) fleets had the highest impacts on both target and non target ecological groups. On the contrary, purse seining ( Lampara) showed medium to low impacts on the ecosystem; cetaceans, marine turtles and sea birds were not significantly involved in competition with fishing activity.

National Dam Inspection Program. Saxe Pond Dam (NDI I.D. Number PA-729, DER ID Number 8-10) Susquehanna River Basin. North Branch Mehoopany Creek, Bradford County, Pennsylvania. Phase I Inspection Report,

DTIC Science & Technology

1981-04-01

presently utilized as a fishing camp. b. Location. -The dam is located approximately 2 miles northwest of the Village of Colley, Wilmot Township...1.3 Pertinent Data. a. Drainage Area. 3.13 square miles b. Discharge at Dam Site ( cfs ). Maximum flood at dam site Unknown Drainline capacity at normal...Overtopping Analysis. Complete summary sheets for the computer output are presented in Appendix D. Peak inflow (PMF) 11580 cfs Spillway capacity (recessed

Detecting conservation benefits of marine reserves on remote reefs of the northern GBR

PubMed Central

Bozec, Yves-Marie; Dempsey, Alexandra; Ortiz, Juan Carlos; Robbins, William D.; Renaud, Philip G.; Mumby, Peter J.

2017-01-01

The Great Barrier Reef Marine Park (GBRMP) is the largest network of marine reserves in the world, yet little is known of the efficacy of no-fishing zones in the relatively lightly-exploited remote parts of the system (i.e., northern regions). Here, we find that the detection of reserve effects is challenging and that heterogeneity in benthic habitat composition, specifically branching coral cover, is one of the strongest driving forces of fish assemblages. As expected, the biomass of targeted fish species was generally greater (up to 5-fold) in no-take zones than in fished zones, but we found no differences between the two forms of no-take zone: ‘no-take’ versus ‘no-entry’. Strong effects of zoning were detected in the remote Far-North inshore reefs and more central outer reefs, but surprisingly fishing effects were absent in the less remote southern locations. Moreover, the biomass of highly targeted species was nearly 2-fold greater in fished areas of the Far-North than in any reserve (no-take or no-entry) further south. Despite high spatial variability in fish biomass, our results suggest that fishing pressure is greater in southern areas and that poaching within reserves may be common. Our results also suggest that fishers ‘fish the line’ as stock sizes in exploited areas decreased near larger no-take zones. Interestingly, an analysis of zoning effects on small, non-targeted fishes appeared to suggest a top-down effect from mesopredators, but was instead explained by variability in benthic composition. Thus, we demonstrate the importance of including appropriate covariates when testing for evidence of trophic cascades and reserve successes or failures. PMID:29117191

A moving target—incorporating knowledge of the spatial ecology of fish into the assessment and management of freshwater fish populations

USGS Publications Warehouse

Cooke, Steven J.; Martins, Eduardo G; Struthers, Daniel P; Gutowsky, Lee F G; Powers, Michael H.; Doka, Susan E.; Dettmers, John M.; Crook, David A; Lucas, Martyn C.; Holbrook, Christopher; Krueger, Charles C.

2016-01-01

Freshwater fish move vertically and horizontally through the aquatic landscape for a variety of reasons, such as to find and exploit patchy resources or to locate essential habitats (e.g., for spawning). Inherent challenges exist with the assessment of fish populations because they are moving targets. We submit that quantifying and describing the spatial ecology of fish and their habitat is an important component of freshwater fishery assessment and management. With a growing number of tools available for studying the spatial ecology of fishes (e.g., telemetry, population genetics, hydroacoustics, otolith microchemistry, stable isotope analysis), new knowledge can now be generated and incorporated into biological assessment and fishery management. For example, knowing when, where, and how to deploy assessment gears is essential to inform, refine, or calibrate assessment protocols. Such information is also useful for quantifying or avoiding bycatch of imperiled species. Knowledge of habitat connectivity and usage can identify critically important migration corridors and habitats and can be used to improve our understanding of variables that influence spatial structuring of fish populations. Similarly, demographic processes are partly driven by the behavior of fish and mediated by environmental drivers. Information on these processes is critical to the development and application of realistic population dynamics models. Collectively, biological assessment, when informed by knowledge of spatial ecology, can provide managers with the ability to understand how and when fish and their habitats may be exposed to different threats. Naturally, this knowledge helps to better evaluate or develop strategies to protect the long-term viability of fishery production. Failure to understand the spatial ecology of fishes and to incorporate spatiotemporal data can bias population assessments and forecasts and potentially lead to ineffective or counterproductive management actions.

A moving target--incorporating knowledge of the spatial ecology of fish into the assessment and management of freshwater fish populations.

PubMed

Cooke, Steven J; Martins, Eduardo G; Struthers, Daniel P; Gutowsky, Lee F G; Power, Michael; Doka, Susan E; Dettmers, John M; Crook, David A; Lucas, Martyn C; Holbrook, Christopher M; Krueger, Charles C

2016-04-01

Freshwater fish move vertically and horizontally through the aquatic landscape for a variety of reasons, such as to find and exploit patchy resources or to locate essential habitats (e.g., for spawning). Inherent challenges exist with the assessment of fish populations because they are moving targets. We submit that quantifying and describing the spatial ecology of fish and their habitat is an important component of freshwater fishery assessment and management. With a growing number of tools available for studying the spatial ecology of fishes (e.g., telemetry, population genetics, hydroacoustics, otolith microchemistry, stable isotope analysis), new knowledge can now be generated and incorporated into biological assessment and fishery management. For example, knowing when, where, and how to deploy assessment gears is essential to inform, refine, or calibrate assessment protocols. Such information is also useful for quantifying or avoiding bycatch of imperiled species. Knowledge of habitat connectivity and usage can identify critically important migration corridors and habitats and can be used to improve our understanding of variables that influence spatial structuring of fish populations. Similarly, demographic processes are partly driven by the behavior of fish and mediated by environmental drivers. Information on these processes is critical to the development and application of realistic population dynamics models. Collectively, biological assessment, when informed by knowledge of spatial ecology, can provide managers with the ability to understand how and when fish and their habitats may be exposed to different threats. Naturally, this knowledge helps to better evaluate or develop strategies to protect the long-term viability of fishery production. Failure to understand the spatial ecology of fishes and to incorporate spatiotemporal data can bias population assessments and forecasts and potentially lead to ineffective or counterproductive management actions.

The Paraty artisanal fishery (southeastern Brazilian coast): ethnoecology and management of a social-ecological system (SES).

PubMed

Begossi, Alpina; Salyvonchyk, Svetlana; Nora, Vinicius; Lopes, Priscila F; Silvano, Renato A M

2012-06-27

This study intends to give recommendations to the management of Paraty fishery in Brazil through an interplay of local and scientific knowledge. In particular, the objectives are the following: 1) to describe the Paraty fishery; 2) to compare the fishermen's local ecological knowledge with recorded fish landings and previous studies in Paraty; 3) to combine the data on local fishing and on local/Caiçara livelihoods with the SES (social-ecological systems) Model. The methods include a systematic survey of fishing in Tarituba and Praia Grande, which are located in the northern end and the central part of the Paraty municipality, respectively. For four days each month, systematic data on catches at landing points were collected, as well as macroscopic gonad analysis data for the fishes Centropomus parallelus and C. undecimalis (snook, robalo), Epinephelus marginatus (grouper, garoupa), Scomberomorus cavalla (King mackerel, cavala), and Lutjanus synagris (Lane snapper, vermelho). Spring and summer are important seasons during which some species reproduce, and the integration of fishing periods for some target species could assist in fishing management through the use of closed seasons. Fishermen could obtain complementary earnings from tourism and from the "defeso system" (closed season including a salary payment) to conserve fishing stocks. The SES model facilitates an understanding of the historical context of fishing, its economic importance for local livelihoods, the constraints from conservation measures that affect fishermen, and the management processes that already exist, such as the defeso. If used to integrate fishing with complementary activities (tourism), such a system could improve the responsibility of fishermen regarding the conservation of fish stocks.

The paraty artisanal fishery (southeastern Brazilian coast): ethnoecology and management of a social-ecological system (SES)

PubMed Central

2012-01-01

This study intends to give recommendations to the management of Paraty fishery in Brazil through an interplay of local and scientific knowledge. In particular, the objectives are the following: 1) to describe the Paraty fishery; 2) to compare the fishermen’s local ecological knowledge with recorded fish landings and previous studies in Paraty; 3) to combine the data on local fishing and on local/Caiçara livelihoods with the SES (social-ecological systems) Model. The methods include a systematic survey of fishing in Tarituba and Praia Grande, which are located in the northern end and the central part of the Paraty municipality, respectively. For four days each month, systematic data on catches at landing points were collected, as well as macroscopic gonad analysis data for the fishes Centropomus parallelus and C. undecimalis (snook, robalo), Epinephelus marginatus (grouper, garoupa), Scomberomorus cavalla (King mackerel, cavala), and Lutjanus synagris (Lane snapper, vermelho). Spring and summer are important seasons during which some species reproduce, and the integration of fishing periods for some target species could assist in fishing management through the use of closed seasons. Fishermen could obtain complementary earnings from tourism and from the “defeso system” (closed season including a salary payment) to conserve fishing stocks. The SES model facilitates an understanding of the historical context of fishing, its economic importance for local livelihoods, the constraints from conservation measures that affect fishermen, and the management processes that already exist, such as the defeso. If used to integrate fishing with complementary activities (tourism), such a system could improve the responsibility of fishermen regarding the conservation of fish stocks. PMID:22738073

The Influence of Fisher Knowledge on the Susceptibility of Reef Fish Aggregations to Fishing

PubMed Central

Robinson, Jan; Cinner, Joshua E.; Graham, Nicholas A. J.

2014-01-01

Reef fishes that exhibit predictable aggregating behaviour are often considered vulnerable to overexploitation. However, fisher knowledge of this behaviour is often heterogeneous and, coupled with socioeconomic factors that constrain demand for or access to aggregated fish, will influence susceptibility to fishing. At two case study locations in Papua New Guinea, Ahus and Karkar islands, we conducted interview-based surveys to examine how local context influenced heterogeneity in knowledge of fish aggregations. We then explored the role of fisher knowledge in conferring susceptibility to fishing relative to socioeconomic drivers of fishing effort. Local heterogeneity in knowledge of aggregating behaviour differed between our case studies. At Ahus, variable access rights among fishers and genders to the main habitats were sources of heterogeneity in knowledge. By contrast, knowledge was more homogenous at Karkar and the sole source of variation was gear type. Differences between locations in the susceptibility of aggregations to fishing depended primarily on socioeconomic drivers of fishing effort rather than catchability. While Ahus fishers were knowledgeable of fish aggregations and used more selective gears, Karkar fishers were less constrained by tenure in their access to aggregation habitat. However, fishing effort was greater at Ahus and likely related to high dependency on fishing, greater access to provincial capital markets than Karkar and a weakening of customary management. Moreover, highly efficient fishing techniques have emerged at Ahus to exploit the non-reproductive aggregating behaviour of target species. Understanding how knowledge is structured within fishing communities and its relation to socioeconomic drivers of fishing effort is important if customary practices for conservation, such as tambu areas, are to be supported. The findings of this study call for a holistic approach to assessing the risks posed to reef fish aggregations by fishing, grounded in the principals of fisheries science and emerging social-ecological thinking. PMID:24646910

The influence of fisher knowledge on the susceptibility of reef fish aggregations to fishing.

PubMed

Robinson, Jan; Cinner, Joshua E; Graham, Nicholas A J

2014-01-01

Reef fishes that exhibit predictable aggregating behaviour are often considered vulnerable to overexploitation. However, fisher knowledge of this behaviour is often heterogeneous and, coupled with socioeconomic factors that constrain demand for or access to aggregated fish, will influence susceptibility to fishing. At two case study locations in Papua New Guinea, Ahus and Karkar islands, we conducted interview-based surveys to examine how local context influenced heterogeneity in knowledge of fish aggregations. We then explored the role of fisher knowledge in conferring susceptibility to fishing relative to socioeconomic drivers of fishing effort. Local heterogeneity in knowledge of aggregating behaviour differed between our case studies. At Ahus, variable access rights among fishers and genders to the main habitats were sources of heterogeneity in knowledge. By contrast, knowledge was more homogenous at Karkar and the sole source of variation was gear type. Differences between locations in the susceptibility of aggregations to fishing depended primarily on socioeconomic drivers of fishing effort rather than catchability. While Ahus fishers were knowledgeable of fish aggregations and used more selective gears, Karkar fishers were less constrained by tenure in their access to aggregation habitat. However, fishing effort was greater at Ahus and likely related to high dependency on fishing, greater access to provincial capital markets than Karkar and a weakening of customary management. Moreover, highly efficient fishing techniques have emerged at Ahus to exploit the non-reproductive aggregating behaviour of target species. Understanding how knowledge is structured within fishing communities and its relation to socioeconomic drivers of fishing effort is important if customary practices for conservation, such as tambu areas, are to be supported. The findings of this study call for a holistic approach to assessing the risks posed to reef fish aggregations by fishing, grounded in the principals of fisheries science and emerging social-ecological thinking.

Mercury in Pacific bluefin tuna (Thunnus orientalis):bioaccumulation and trans-Pacific Ocean migration

USGS Publications Warehouse

Colman, John A.; Nogueira, Jacob I.; Pancorbo, Oscar C.; Batdorf, Carol A.; Block, Barbara A.

2015-01-01

Pacific bluefin tuna (Thunnus orientalis) have the largest home range of any tuna species and are well known for the capacity to make transoceanic migrations. We report the measurement of mercury (Hg) concentrations in wild Pacific bluefin tuna (PBFT), the first reported with known size-of-fish and capture location. The results indicate juvenile PBFT that are recently arrived in the California Current from the western Pacific Ocean have significantly higher Hg concentrations in white muscle (0.51 ug/g wet mass, wm) than PBFT of longer California Current residency (0.41 ug/g wm). These new arrivals are also higher in Hg concentration than PBFT in farm pens (0.43 ug/g wm) that were captured on arrival in the California Current and raised in pens on locally derived feed. Analysis by direct Hg analyzer and attention to Hg by tissue type and location on the fish allowed precise comparisons of mercury among wild and captive fish populations. Analysis of migration and nearshore residency, determined through extensive archival tagging, bioaccumulation models, trophic investigations, and potential coastal sources of methylmercury, indicates Hg bioaccumulation is likely greater for PBFT juvenile habitats in the western Pacific Ocean (East China Sea, Yellow Sea) than in the eastern Pacific Ocean (California Current). Differential bioaccumulation may be a trophic effect or reflect methylmercury availability, with potential sources for coastal China (large hypoxic continental shelf receiving discharge of three large rivers, and island-arc volcanism) different from those for coastal Baja California (small continental shelf, no large rivers, spreading-center volcanism).

Improving the Recreational Fishery on Malmstrom Air Force Base

DTIC Science & Technology

2010-08-01

requirements of NEPA, Air Force Regulations, and all applicable laws and regulations. Pow Wow Park is a recreational site located in the east central area...fishing day. Three hundred juvenile brown trout (Salmo trutta) from the Montana Fish, Wildlife and Parks State Fish Hatchery in Lewistown, Montana are...have proposed numerous improvements to the Pow Wow Park recreational area, including site work and equipment installations to enhance fish and wildlife

Physical aquatic habitat assessment, Fort Randall segment of the Missouri River, Nebraska and South Dakota

USGS Publications Warehouse

Elliott, Caroline M.; Jacobson, Robert B.; DeLonay, Aaron J.

2004-01-01

This study addressed habitat availability and use by endangered pallid sturgeon (Scaphirhynchus albus) in the Fort Randall segment of the Missouri River. Physical aquatic habitat - depth, velocity, and substrate - was mapped in 15 sites in Augsust and October of 2002. Habitat assessments were compared with fish locations using radio telemetry. Results indicate that pallid sturgeon preferentially use locations in the Fort Randall segment deeper than the average available habitat, with prominent usage peaks aat 3.5-4.0 m and 6-6.5 m, compared to the modal availability at 3-3.5 m. The fish use habitats with a modal velocity of 80 cm/s; the used velocities appear to be in proportion to their availability. Fish located preferentially over sand substrate and seemed to avoid mud and submerged vegetation.

Can personality predict individual differences in brook trout spatial learning ability?

PubMed

White, S L; Wagner, T; Gowan, C; Braithwaite, V A

2017-08-01

While differences in individual personality are common in animal populations, understanding the ecological significance of variation has not yet been resolved. Evidence suggests that personality may influence learning and memory; a finding that could improve our understanding of the evolutionary processes that produce and maintain intraspecific behavioural heterogeneity. Here, we tested whether boldness, the most studied personality trait in fish, could predict learning ability in brook trout. After quantifying boldness, fish were trained to find a hidden food patch in a maze environment. Stable landmark cues were provided to indicate the location of food and, at the conclusion of training, cues were rearranged to test for learning. There was a negative relationship between boldness and learning as shy fish were increasingly more successful at navigating the maze and locating food during training trials compared to bold fish. In the altered testing environment, only shy fish continued using cues to search for food. Overall, the learning rate of bold fish was found to be lower than that of shy fish for several metrics suggesting that personality could have widespread effects on behaviour. Because learning can increase plasticity to environmental change, these results have significant implications for fish conservation. Copyright © 2016 Elsevier B.V. All rights reserved.

Evaluation of Boundary Dam spillway using an Autonomous Sensor Fish Device

DOE Office of Scientific and Technical Information (OSTI.GOV)

Deng, Z. D.; Duncan, J. P.; Arnold, J. L.

Fish passage conditions over spillways are important for the operations of hydroelectric dams because spillways are usually considered as a common alternative passage route to divert fish from the turbines. The objectives of this study were to determine the relative potential of fish injury during spillway passage both before and after the installation of baffle blocks at Boundary Dam, and to provide validation data for a model being used to predict total dissolved gas levels. Sensor Fish were deployed through a release system mounted on the face of the dam in the forebay. Three treatments, based on the lateral positionmore » on the spillway, were evaluated for both the baseline and post-modification evaluations: Left Middle, Right Middle, and Right. No significant acceleration events were detected in the forebay, gate, or transition regions for any release location; events were only observed on the chute and in the tailrace. Baseline acceleration events observed in the chute region were all classified as strikes, whereas post-modification events included strike and shear on the chute. While the addition of baffle blocks increased the number of significant events observed on the spillway chute, overall fewer events were observed in the tailrace post-modification. Analysis of lateral positioning of passage indicated that the Right Middle treatment was potentially less injurious to fish based on relative frequency of significant events at each location. The construction of baffle blocks on the spillway visibly changed the flow regime. Prior to installation the flow jet was relatively thin, impacting the tailrace as a coherent stream that plunged deeply, possibly contributing to total dissolved gas production. Following baffle block construction, the discharge jet was more fragmented, potentially disrupting the plunge depth and decreasing the time that bubbles would be at depth in the plunge pool. The results in this study support the expected performance of the modified spillway chute: the addition of the baffle blocks generally lessened the depth and impact of entry. This study provides information that can be used to help design and operate spillways for improving fish passage conditions.« less

36 CFR 13.1202 - Fishing.

Code of Federal Regulations, 2010 CFR

2010-07-01

... only on the Naknek River during times and dates established by the Alaska Department of Fish and Game, and only from markers located just above Trefon's cabin downstream to the park boundary. (b...

Using river distance and existing hydrography data can improve the geostatistical estimation of fish tissue mercury at unsampled locations.

PubMed

Money, Eric S; Sackett, Dana K; Aday, D Derek; Serre, Marc L

2011-09-15

Mercury in fish tissue is a major human health concern. Consumption of mercury-contaminated fish poses risks to the general population, including potentially serious developmental defects and neurological damage in young children. Therefore, it is important to accurately identify areas that have the potential for high levels of bioaccumulated mercury. However, due to time and resource constraints, it is difficult to adequately assess fish tissue mercury on a basin wide scale. We hypothesized that, given the nature of fish movement along streams, an analytical approach that takes into account distance traveled along these streams would improve the estimation accuracy for fish tissue mercury in unsampled streams. Therefore, we used a river-based Bayesian Maximum Entropy framework (river-BME) for modern space/time geostatistics to estimate fish tissue mercury at unsampled locations in the Cape Fear and Lumber Basins in eastern North Carolina. We also compared the space/time geostatistical estimation using river-BME to the more traditional Euclidean-based BME approach, with and without the inclusion of a secondary variable. Results showed that this river-based approach reduced the estimation error of fish tissue mercury by more than 13% and that the median estimate of fish tissue mercury exceeded the EPA action level of 0.3 ppm in more than 90% of river miles for the study domain.

Additive diversity partitioning of fish in a Caribbean coral reef undergoing shift transition.

PubMed

Acosta-González, Gilberto; Rodríguez-Zaragoza, Fabián A; Hernández-Landa, Roberto C; Arias-González, Jesús E

2013-01-01

Shift transitions in dominance on coral reefs from hard coral cover to fleshy macroalgae are having negative effects on Caribbean coral reef communities. Data on spatiotemporal changes in biodiversity during these modifications are important for decision support for coral reef biodiversity protection. The main objective of this study is to detect the spatiotemporal patterns of coral reef fish diversity during this transition using additive diversity-partitioning analysis. We examined α, β and γ fish diversity from 2000 to 2010, during which time a shift transition occurred at Mahahual Reef, located in Quintana Roo, Mexico. Data on coral reef fish and benthic communities were obtained from 12 transects per geomorphological unit (GU) in two GUs (reef slope and terrace) over six years (2000, 2005, 2006, 2007, 2008, 2010). Spatial analysis within and between the GUs indicated that the γ-diversity was primarily related to higher β-diversity. Throughout the six study years, there were losses of α, β and γ-diversity associated spatially with the shallow (reef slope) and deeper (reef terrace) GUs and temporally with the transition in cover from mound corals to fleshy macroalgae and boulder corals. Despite a drastic reduction in the number of species over time, β-diversity continues to be the highest component of γ-diversity. The shift transition had a negative effect on α, β and γ-diversity, primarily by impacting rare species, leading a group of small and less vulnerable fish species to become common and an important group of rare species to become locally extinct. The maintenance of fish heterogeneity (β-diversity) over time may imply the abetment of vulnerability in the face of local and global changes.

Automatic electronic fish tracking system

NASA Technical Reports Server (NTRS)

Osborne, P. W.; Hoffman, E.; Merriner, J. V.; Richards, C. E.; Lovelady, R. W.

1976-01-01

A newly developed electronic fish tracking system to automatically monitor the movements and migratory habits of fish is reported. The system is aimed particularly at studies of effects on fish life of industrial facilities which use rivers or lakes to dump their effluents. Location of fish is acquired by means of acoustic links from the fish to underwater Listening Stations, and by radio links which relay tracking information to a shore-based Data Base. Fish over 4 inches long may be tracked over a 5 x 5 mile area. The electronic fish tracking system provides the marine scientist with electronics which permit studies that were not practical in the past and which are cost-effective compared to manual methods.

Variation in angler distribution and catch rates of stocked rainbow trout in a small reservoir

USGS Publications Warehouse

Harmon, Brian S.; Martin, Dustin R.; Chizinski, Christopher J.; Pope, Kevin L.

2018-01-01

We investigated the spatial and temporal relationship of catch rates and angler party location for two days following a publicly announced put-and-take stocking of rainbow trout (Oncorhynchus mykiss). Catch rates declined with time since stocking and distance from stocking. We hypothesized that opportunity for high catch rates would cause anglers to fish near the stocking location and disperse with time, however distance between angler parties and stocking was highly variable at any given time. Spatially explicit differences in catch rates can affect fishing quality. Further research could investigate the variation between angler distribution and fish distribution within a waterbody.

Spatial and temporal patterns of mercury concentrations in freshwater fish across the Western United States and Canada

USGS Publications Warehouse

Eagles-Smith, Collin A.; Ackerman, Joshua T.; Willacker, James J.; Tate, Michael T.; Lutz, Michelle A; Fleck, Jacob; Stewart, Robin; Wiener, James G.; Evers, David C.; Lepak, Jesse M.; Davis, Jay A.; Pritz, Colleen Flanagan

2016-01-01

Methylmercury contamination of fish is a global threat to environmental health. Mercury (Hg) monitoring programs are valuable for generating data that can be compiled for spatially broad syntheses to identify emergent ecosystem properties that influence fish Hg bioaccumulation. Fish total Hg (THg) concentrations were evaluated across the Western United States (US) and Canada, a region defined by extreme gradients in habitat structure and water management. A database was compiled with THg concentrations in 96,310 fish that comprised 206 species from 4262 locations, and used to evaluate the spatial distribution of fish THg across the region and effects of species, foraging guilds, habitats, and ecoregions. Areas of elevated THg exposure were identified by developing a relativized estimate of fish mercury concentrations at a watershed scale that accounted for the variability associated with fish species, fish size, and site effects. THg concentrations in fish muscle ranged between 0.001 and 28.4 (μg/g wet weight (ww)) with a geometric mean of 0.17. Overall, 30% of individual fish samples and 17% of means by location exceeded the 0.30 μg/g ww US EPA fish tissue criterion. Fish THg concentrations differed among habitat types, with riverine habitats consistently higher than lacustrine habitats. Importantly, fish THg concentrations were not correlated with sediment THg concentrations at a watershed scale, but were weakly correlated with sediment MeHg concentrations, suggesting that factors influencing MeHg production may be more important than inorganic Hg loading for determining fish MeHg exposure. There was large heterogeneity in fish THg concentrations across the landscape; THg concentrations were generally higher in semi-arid and arid regions such as the Great Basin and Desert Southwest, than in temperate forests. Results suggest that fish mercury exposure is widespread throughout Western US and Canada, and that species, habitat type, and region play an important role in influencing ecological risk of mercury in aquatic ecosystems.

Chromosomal characteristics and distribution of rDNA sequences in the brook trout Salvelinus fontinalis (Mitchill, 1814).

PubMed

Śliwińska-Jewsiewicka, A; Kuciński, M; Kirtiklis, L; Dobosz, S; Ocalewicz, K; Jankun, Malgorzata

2015-08-01

Brook trout Salvelinus fontinalis (Mitchill, 1814) chromosomes have been analyzed using conventional and molecular cytogenetic techniques enabling characteristics and chromosomal location of heterochromatin, nucleolus organizer regions (NORs), ribosomal RNA-encoding genes and telomeric DNA sequences. The C-banding and chromosome digestion with the restriction endonucleases demonstrated distribution and heterogeneity of the heterochromatin in the brook trout genome. DNA sequences of the ribosomal RNA genes, namely the nucleolus-forming 28S (major) and non-nucleolus-forming 5S (minor) rDNAs, were physically mapped using fluorescence in situ hybridization (FISH) and primed in situ labelling. The minor rDNA locus was located on the subtelo-acrocentric chromosome pair No. 9, whereas the major rDNA loci were dispersed on 14 chromosome pairs, showing a considerable inter-individual variation in the number and location. The major and minor rDNA loci were located at different chromosomes. Multichromosomal location (3-6 sites) of the NORs was demonstrated by silver nitrate (AgNO3) impregnation. All Ag-positive i.e. active NORs corresponded to the GC-rich blocks of heterochromatin. FISH with telomeric probe showed the presence of the interstitial telomeric site (ITS) adjacent to the NOR/28S rDNA site on the chromosome 11. This ITS was presumably remnant of the chromosome rearrangement(s) leading to the genomic redistribution of the rDNA sequences. Comparative analysis of the cytogenetic data among several related salmonid species confirmed huge variation in the number and the chromosomal location of rRNA gene clusters in the Salvelinus genome.

Incorporation of flow injection analysis with dual-wavelength overlapping resonance Rayleigh scattering for rapid determination of malachite green and its metabolite in fish.

PubMed

Zhu, Jinghui; Qin, Mingyou; Liu, Shaopu; Liu, Zhongfang; Yang, Jidong; Hu, Xiaoli

2014-09-15

A flow injection analysis (FIA) system combined with dual-wavelength overlapping resonance Rayleigh scattering (DWO-RRS) has been established and validated for rapid determination of malachite green (MG) and its metabolite in fish samples. Under experimental condition, MG would react with Erythrosin (Ery) to form ion-association complexes, resulting in the occurrence of two RRS peaks and a dramatic enhancement of RRS intensity. The maximum RRS peaks were located at 286 nm and 337 nm. It is noted that the increments of both of these two peaks were proportional to the concentration of MG. The detection limit of DWO-RRS was 1.5 ng/mL, which was comparable to several reported methods. Moreover, the results of real sample analysis exhibited an acceptable recovery between 97.5% and 103.6%, indicating that the method had good reproducibility. Copyright © 2014 Elsevier B.V. All rights reserved.

Largemouth bass (Micropterus salmoides) and striped mullet (Mugil cephalus) as vectors of contaminants to human consumers in northwest Florida

USGS Publications Warehouse

Karouna-Renier, Natalie K.; Snyder, Richard A.; Lange, Ted; Gibson, Suzanne; Allison, Jeffrey G.; Wagner, Matthew E.; Rao, K. Ranga

2011-01-01

The health benefits of regular consumption of fish and seafood have been espoused for many years. However, fish are also a potential source of environmental contaminants that have well known adverse effects on human health. We investigated the consumption risks for largemouth bass (Micropterus salmoides; n = 104) and striped mullet (Mugil cephalus; n = 170), two commonly harvested and consumed fish species inhabiting fresh and estuarine waters in northwest Florida. Skinless fillets were analyzed for total mercury, inorganic arsenic, polychlorinated dibenzo-p-dioxins and polychlorinated dibenzofurans (PCDD/F), polychlorinated biphenyls (PCBs), and organochlorine pesticides. Contaminant levels were compared to screening values (SV) calculated using U.S. Environmental Protection Agency (EPA) recommendations for establishing consumption advisories. Largemouth bass were found to contain high levels of total mercury at all sampling locations (0.37-0.89 ug/g) and one location exhibited elevated total PCBs (39.4 ng/g). All of the samples exceeded Florida fish consumption advisory trigger levels for total mercury and one location exceeded the U.S. EPA SV for total PCBs. As a result of the high mercury levels, the non-cancer health risks (hazard index-HI) for bass were above 1 for all locations. Striped mullet from several locations with known point sources contained elevated levels of PCBs (overall range 3.4-59.3 ng/g). However, total mercury levels in mullet were low. Eight of the 16 mullet sampling locations exceeded the U.S. EPA SV for total PCBs and two locations exceeded an HI of 1 due to elevated PCBs. Despite the elevated levels of total PCBs in some samples, only two locations exceeded the acceptable cancer risk range and therefore cancer health risks from consumption of bass and mullet were determined to be low at most sampling locations.

Upstream movements of Atlantic Salmon in the Lower Penobscot River, Maine following two dam removals and fish passage modifications

USGS Publications Warehouse

Izzo, Lisa K.; Maynard, George A.; Zydlewski, Joseph D.

2016-01-01

The Penobscot River Restoration Project (PRRP), to be completed in 2016, involved an extensive plan of dam removal, increases in hydroelectric capacity, and fish passage modifications to increase habitat access for diadromous species. As part of the PRRP, Great Works and Veazie dams were removed, making Milford Dam the first impediment to federally endangered Atlantic Salmon Salmo salar. Upstream habitat access for Atlantic Salmon is dependent upon successful and timely passage at Milford Dam because nearly all suitable spawning habitat is located upstream. In 2014 and 2015, a total of 73 adult salmon were radio-tagged to track their upstream movements through the Penobscot River to assess potential delays at (1) the dam remnants, (2) the confluence of the Stillwater Branch and the main stem of the Penobscot River below the impassable Orono Dam, and (3) the Milford Dam fish lift (installed in 2014). Movement rates through the dam remnants and the Stillwater confluence were comparable to open river reaches. Passage efficiency of the fish lift was high in both years (95% and 100%). However, fish experienced long delays at Milford Dam, with approximately one-third of fish taking more than a week to pass in each year, well below the Federal Energy Regulatory Commission passage standard of 95% within 48 h. Telemetry indicates most fish locate the fishway entrance within 5 h of arrival and were observed at the entrance at all hours of the day. These data indicate that overall transit times through the lower river were comparable to reported movement rates prior to changes to the Penobscot River due to the substantial delays seen at Milford Dam. The results of this study show that while adult Atlantic Salmon locate the new fish lift entrance quickly, passage of these fish was significantly delayed under 2014–2015 operations.

Polychlorinated naphthalenes and polychlorinated biphenyls in fishes from Michigan waters including the Great Lakes

DOE Office of Scientific and Technical Information (OSTI.GOV)

Kannan, K.; Yamashita, N.; Imagawa, Takashi

2000-02-15

Polychlorinated naphthalene (PCN) and polychlorinated biphenyl (PCB) congeners were measured in while body and fillet of fishes collected from Michigan waters, including the Great Lakes, during 1996--1997. PCNs were found in all the fishes analyzed including those from Siskiwit Lake, a remote lake located near the southern shoreline of Isle Royale National park in Lake Superior. Concentration of total PCNs in fishes ranged from 19 to 31 400 pg/g, wet wt, and varied depending on sampling location and species. Fishes from the Detroit River contained the greatest concentrations of both PCNs and PCBs. Concentrations of total PCNs in fishes frommore » Michigan waters were significantly correlated with the concentrations of PCBs. As with total PCN concentrations, the profiles of PCN isomer/congener distribution in fishes varied among sampling locations and species. Fishes from the Detroit River contained PCN profile similar to that of Halowax 1014, whereas those from Siskiwit Lake and lake Superior contained greater proportions of congeners which have great bioaccumulative potential. Estimated concentrations of 2,3,7,8-tetrachlorodibenzo-p-dioxin equivalents (TEQs) of PCNs ranged from 0.007 to 11 pg/g, wet wt. PCN congeners 66/67 and 69 accounted for greater than 80% of the TEQs contributed by PCNs. TEQs contributed by PCBs, estimated based on H411E bioassay-derived TEFs, were in the range of 0.06--11 pg/g, wet wt, which were similar to those contributed by PCNs. When international TEFs (1-TEFs) for coplanar PCBs were applied, estimated PCB-TEQs ranged from 0.46 to 79 pg/g, wet wt, which were 5--10 times greater than those that were estimated from H411E TEFs. PCB congener 126 contributed greater than 50% of the TEQs contributed by PCBs in all the fishes. Overall, when similarly derived TEFs were used. PCNs contributed 2--57% of the sum of TEQs of PCNs and PCBs.« less

Cleaning up the biogeography of Labroides dimidiatus using phylogenetics and morphometrics

NASA Astrophysics Data System (ADS)

Sims, C. A.; Riginos, C.; Blomberg, S. P.; Huelsken, T.; Drew, J.; Grutter, A. S.

2014-03-01

Cleaner fishes are some of the most conspicuous organisms on coral reefs due to their behaviour and prominent body pattern, consisting of a lateral stripe and blue/yellow colouration. All obligate cleaner fishes share this body stripe pattern, which is an important signal for attracting client fishes. However, variability in the cleaning signal of the cleaner fish Labroides dimidiatus has been documented across its range. Here, we investigate the geographic distribution of cleaner signal polymorphisms in L. dimidiatus and contrast this to phylogeographic variation in mitochondrial (mt) DNA. We used samples from 12 sites for genetic analyses, encompassing much of L. dimidiatus' range from the Red Sea to Fiji. We obtained morphometric measures of the cleaner signal body stripe width from individuals among six of the sites and qualitatively grouped tail stripe shape. mtDNA control region sequences were used for phylogenetic and population genetic analyses. We found that body stripe width was significantly correlated with tail stripe shape and geographical location, with Indian Ocean populations differing in morphology from western Pacific populations. L. dimidiatus haplotypes formed two reciprocally monophyletic clades, although in contrast to morphology, Japanese cleaner fish fell within the same clade as Indian Ocean cleaner fish and both clade types were sympatric in Papua New Guinea. An additional novel finding of our research was that the inclusion of two closely related cleaner fish species, Labroides pectoralis and Labroides bicolor, in the phylogenetic analysis rendered L. dimidiatus polyphyletic. Overall, the findings suggest the diversity within L. dimidiatus is underestimated.

Supporting decision-making for improving longitudinal connectivity for diadromous and potamodromous fishes in complex catchments.

PubMed

Brevé, Niels W P; Buijse, Anthonie D; Kroes, Martin J; Wanningen, Herman; Vriese, Frederik T

2014-10-15

Preservation and restoration of Europe's endangered migratory fish species and habitats are high on the international river basin policy agenda. Improvement through restoration of longitudinal connectivity is seen as an important measure, but although prioritization of in-stream barriers has been addressed at local and regional levels the process still lacks adequate priority on the international level. This paper introduces a well-tested method, designed to help decision makers achieve the rehabilitation of targeted ichthyofauna more successfully. This method assesses artificial barriers within waters designated under the Water Framework Directive (WFD), Europe's main legislative driver for ecological improvement of river basins. The method aggregates migratory fish communities (both diadromous and potamodromous) into functional biological units (ecological fish guilds) and defines their most pressing habitat requirements. Using GIS mapping and spatial analysis of the potential ranges (fish zonation) we pin-point the most important barriers, per guild. This method was developed and deployed over a 12 year period as a practical case study, fitting data derived from the 36 regional water management organisations in the Netherlands. We delivered national advice on the prioritization of a total of 2924 barriers located within WFD water bodies, facilitating migration for all 18 indigenous migratory fish species. Scaling up to larger geographical areas can be achieved using datasets from other countries to link water body typologies to distribution ranges of migratory fish species. Copyright © 2014 Elsevier B.V. All rights reserved.

Exploring Spatiotemporal Trends in Commercial Fishing Effort of an Abalone Fishing Zone: A GIS-Based Hotspot Model

PubMed Central

Jalali, M. Ali; Ierodiaconou, Daniel; Gorfine, Harry; Monk, Jacquomo; Rattray, Alex

2015-01-01

Assessing patterns of fisheries activity at a scale related to resource exploitation has received particular attention in recent times. However, acquiring data about the distribution and spatiotemporal allocation of catch and fishing effort in small scale benthic fisheries remains challenging. Here, we used GIS-based spatio-statistical models to investigate the footprint of commercial diving events on blacklip abalone (Haliotis rubra) stocks along the south-west coast of Victoria, Australia from 2008 to 2011. Using abalone catch data matched with GPS location we found catch per unit of fishing effort (CPUE) was not uniformly spatially and temporally distributed across the study area. Spatial autocorrelation and hotspot analysis revealed significant spatiotemporal clusters of CPUE (with distance thresholds of 100’s of meters) among years, indicating the presence of CPUE hotspots focused on specific reefs. Cumulative hotspot maps indicated that certain reef complexes were consistently targeted across years but with varying intensity, however often a relatively small proportion of the full reef extent was targeted. Integrating CPUE with remotely-sensed light detection and ranging (LiDAR) derived bathymetry data using generalized additive mixed model corroborated that fishing pressure primarily coincided with shallow, rugose and complex components of reef structures. This study demonstrates that a geospatial approach is efficient in detecting patterns and trends in commercial fishing effort and its association with seafloor characteristics. PMID:25992800

Aquatic environmental DNA detects seasonal fish abundance and habitat preference in an urban estuary

PubMed Central

Soboleva, Lyubov; Charlop-Powers, Zachary

2017-01-01

The difficulty of censusing marine animal populations hampers effective ocean management. Analyzing water for DNA traces shed by organisms may aid assessment. Here we tested aquatic environmental DNA (eDNA) as an indicator of fish presence in the lower Hudson River estuary. A checklist of local marine fish and their relative abundance was prepared by compiling 12 traditional surveys conducted between 1988–2015. To improve eDNA identification success, 31 specimens representing 18 marine fish species were sequenced for two mitochondrial gene regions, boosting coverage of the 12S eDNA target sequence to 80% of local taxa. We collected 76 one-liter shoreline surface water samples at two contrasting estuary locations over six months beginning in January 2016. eDNA was amplified with vertebrate-specific 12S primers. Bioinformatic analysis of amplified DNA, using a reference library of GenBank and our newly generated 12S sequences, detected most (81%) locally abundant or common species and relatively few (23%) uncommon taxa, and corresponded to seasonal presence and habitat preference as determined by traditional surveys. Approximately 2% of fish reads were commonly consumed species that are rare or absent in local waters, consistent with wastewater input. Freshwater species were rarely detected despite Hudson River inflow. These results support further exploration and suggest eDNA will facilitate fine-scale geographic and temporal mapping of marine fish populations at relatively low cost. PMID:28403183

Altitudinal variation in fish assemblage diversity in streams of the central Andes of Colombia.

PubMed

Jaramillo-Villa, U; Maldonado-Ocampo, J A; Escobar, F

2010-06-01

This study documents differences in fish assemblages for 32 freshwater streams located between 258 and 2242 m a.s.l. on the eastern slopes of the central range of the Colombian Andes. A total of 2049 fishes belonging to 62 species, 34 genera and 16 families were collected. Species richness declined rapidly with altitude; nearly 90% of the species were recorded between 250 and 1250 m a.s.l. Three of the four physico-chemical variables, of the water, temperature, dissolved oxygen and pH, explained 53.5% of the variation in species richness along the altitudinal gradient, with temperature the most important (37.6%). An analysis of species composition showed that the distinctiveness of the fish fauna increased with elevation, with the greatest turnover observed between 1000 and 1750 m a.s.l. On this altitudinal gradient, turnover was dominated by the loss of species rather than gain, and dominance by just a few species was greater at higher elevations. Turnover was also observed along the altitudinal gradient in the structure of the three functional groups (torrential, pool and pelagic species). The study focused on understanding the pattern of diversity of fish communities inhabiting the Andes in Colombia. Anthropogenic effects on the altitudinal distribution of fish species in the region, however, are largely unknown and would require further investigations.

Broodstock History Strongly Influences Natural Spawning Success in Hatchery Steelhead (Oncorhynchus mykiss).

PubMed

Ford, Michael J; Murdoch, Andrew R; Hughes, Michael S; Seamons, Todd R; LaHood, Eric S

2016-01-01

We used genetic parentage analysis of 6200 potential parents and 5497 juvenile offspring to evaluate the relative reproductive success of hatchery and natural steelhead (Onchorhynchus mykiss) when spawning in the wild between 2008 and 2011 in the Wenatchee River, Washington. Hatchery fish originating from two prior generation hatchery parents had <20% of the reproductive success of natural origin spawners. In contrast, hatchery females originating from a cross between two natural origin parents of the prior generation had equivalent or better reproductive success than natural origin females. Males originating from such a cross had reproductive success of 26-93% that of natural males. The reproductive success of hatchery females and males from crosses consisting of one natural origin fish and one hatchery origin fish was 24-54% that of natural fish. The strong influence of hatchery broodstock origin on reproductive success confirms similar results from a previous study of a different population of the same species and suggests a genetic basis for the low reproductive success of hatchery steelhead, although environmental factors cannot be entirely ruled out. In addition to broodstock origin, fish size, return time, age, and spawning location were significant predictors of reproductive success. Our results indicate that incorporating natural fish into hatchery broodstock is clearly beneficial for improving subsequent natural spawning success, even in a population that has a decades-long history of hatchery releases, as is the case in the Wenatchee River.

Multibiomarker approach in fish to assess the impact of pollution in a large Brazilian river, Paraiba do Sul.

PubMed

Linde-Arias, Ana Rosa; Inácio, Alan F; Novo, Leonardo A; de Alburquerque, Carla; Moreira, Josino C

2008-12-01

This article examines the advantages of the use of biomarkers as environmental indicators by applying it to Paraiba do Sul watershed, one of the most important Brazilian water bodies, which is in a critical environmental situation. We use a multibiomarker approach in fish as an integrated strategy to assess the impact of pollution. It comprehends a general biomarker of fish health, the condition factor (CF), and specific biomarkers of contaminant exposure such as metallothionein (MT), acetylcholinesterase (AChE) activity and biliary polycyclic aromatic hydrocarbons (PAH) metabolites. Our results revealed different effects in the fish from diverse locations with varying degrees of pollution. Furthermore, fish located just upstream of the water-treatment plant of the metropolitan area of Rio de Janeiro has shown to be affected by metals. This study indicates the usefulness of integrating a set of biomarkers to define the effects of anthropogenic inputs in aquatic bodies under complex polluted situations.

Spatial and temporal structure of fish assemblages in an ''inverse estuary'', the Sine Saloum system (Senegal)

NASA Astrophysics Data System (ADS)

Simier, M.; Blanc, L.; Aliaume, C.; Diouf, P. S.; Albaret, J. J.

2004-01-01

As a consequence of the Sahelian drought, the Sine Saloum, a large estuarine system located in Senegal (West Africa), has become an "inverse estuary" since the late sixties, i.e. salinity increases upstream and reaches 100 in some places. To study the fish assemblages of such a modified system, a survey was conducted in 1992, collecting fish every two months with a purse seine at eight sites spread over the three main branches of the estuary. A total of 73 species belonging to 35 families were identified. Eight species comprised 97% of the total numbers of fish. The predominant species was a small clupeid, Sardinella maderensis, representing more than half of the total biomass and nearly 70% of the total number of fish. The spatio-temporal structure of the fish assemblages was studied using the STATIS-CoA method, which combines the multitable approach with the correspondence analysis method. Whatever the season, a strong spatial organization of fish assemblages was observed, mainly related to depth and salinity. Three types of assemblages were identified. In shallow water areas, fish assemblages were dominated by Mugilidae, Gerreidae and Cichlidae and were stable with time. In open water areas, large fluctuations in the species composition were observed, due to the occasional presence of large schools of pelagic species: in the southern area, where salinity and water transparency were the lowest, the main species were Ilisha africana, Brachydeuterus auritus and Chloroscombrus chrysurus, associated with a few Sciaenidae and Tetraodontidae, while the poorest areas were characterized by only two dominant species, S. maderensis and Scomberomorus tritor.

CONTAMINANTS IN FISH

EPA Science Inventory

The objective of this study was to determine inorganic and organic contaminant concentrations in edible tissue of fish collected from eight coastal areas receiving wastewater discharges and from two reference locations. Trace metal residues were statistically similar regardless ...

Acoustic telemetry reveals large-scale migration patterns of walleye in Lake Huron

USGS Publications Warehouse

Hayden, Todd A.; Holbrook, Christopher; Fielder, David G.; Vandergoot, Christopher S.; Bergstedt, Roger A.; Dettmers, John M.; Krueger, Charles C.; Cooke, Steven J.

2014-01-01

Fish migration in large freshwater lacustrine systems such as the Laurentian Great Lakes is not well understood. The walleye (Sander vitreus) is an economically and ecologically important native fish species throughout the Great Lakes. In Lake Huron walleye has recently undergone a population expansion as a result of recovery of the primary stock, stemming from changing food web dynamics. During 2011 and 2012, we used acoustic telemetry to document the timing and spatial scale of walleye migration in Lake Huron and Saginaw Bay. Spawning walleye (n = 199) collected from a tributary of Saginaw Bay were implanted with acoustic tags and their migrations were documented using acoustic receivers (n = 140) deployed throughout U.S. nearshore waters of Lake Huron. Three migration pathways were described using multistate mark-recapture models. Models were evaluated using the Akaike Information Criterion. Fish sex did not influence migratory behavior but did affect migration rate and walleye were detected on all acoustic receiver lines. Most (95%) tagged fish migrated downstream from the riverine tagging and release location to Saginaw Bay, and 37% of these fish emigrated from Saginaw Bay into Lake Huron. Remarkably, 8% of walleye that emigrated from Saginaw Bay were detected at the acoustic receiver line located farthest from the release location more than 350 km away. Most (64%) walleye returned to the Saginaw River in 2012, presumably for spawning. Our findings reveal that fish from this stock use virtually the entirety of U.S. nearshore waters of Lake Huron.

Acoustic telemetry reveals large-scale migration patterns of walleye in Lake Huron.

PubMed

Hayden, Todd A; Holbrook, Christopher M; Fielder, David G; Vandergoot, Christopher S; Bergstedt, Roger A; Dettmers, John M; Krueger, Charles C; Cooke, Steven J

2014-01-01

Fish migration in large freshwater lacustrine systems such as the Laurentian Great Lakes is not well understood. The walleye (Sander vitreus) is an economically and ecologically important native fish species throughout the Great Lakes. In Lake Huron walleye has recently undergone a population expansion as a result of recovery of the primary stock, stemming from changing food web dynamics. During 2011 and 2012, we used acoustic telemetry to document the timing and spatial scale of walleye migration in Lake Huron and Saginaw Bay. Spawning walleye (n = 199) collected from a tributary of Saginaw Bay were implanted with acoustic tags and their migrations were documented using acoustic receivers (n = 140) deployed throughout U.S. nearshore waters of Lake Huron. Three migration pathways were described using multistate mark-recapture models. Models were evaluated using the Akaike Information Criterion. Fish sex did not influence migratory behavior but did affect migration rate and walleye were detected on all acoustic receiver lines. Most (95%) tagged fish migrated downstream from the riverine tagging and release location to Saginaw Bay, and 37% of these fish emigrated from Saginaw Bay into Lake Huron. Remarkably, 8% of walleye that emigrated from Saginaw Bay were detected at the acoustic receiver line located farthest from the release location more than 350 km away. Most (64%) walleye returned to the Saginaw River in 2012, presumably for spawning. Our findings reveal that fish from this stock use virtually the entirety of U.S. nearshore waters of Lake Huron.

Acoustic Telemetry Reveals Large-Scale Migration Patterns of Walleye in Lake Huron

PubMed Central

Hayden, Todd A.; Holbrook, Christopher M.; Fielder, David G.; Vandergoot, Christopher S.; Bergstedt, Roger A.; Dettmers, John M.; Krueger, Charles C.; Cooke, Steven J.

2014-01-01

Fish migration in large freshwater lacustrine systems such as the Laurentian Great Lakes is not well understood. The walleye (Sander vitreus) is an economically and ecologically important native fish species throughout the Great Lakes. In Lake Huron walleye has recently undergone a population expansion as a result of recovery of the primary stock, stemming from changing food web dynamics. During 2011 and 2012, we used acoustic telemetry to document the timing and spatial scale of walleye migration in Lake Huron and Saginaw Bay. Spawning walleye (n = 199) collected from a tributary of Saginaw Bay were implanted with acoustic tags and their migrations were documented using acoustic receivers (n = 140) deployed throughout U.S. nearshore waters of Lake Huron. Three migration pathways were described using multistate mark-recapture models. Models were evaluated using the Akaike Information Criterion. Fish sex did not influence migratory behavior but did affect migration rate and walleye were detected on all acoustic receiver lines. Most (95%) tagged fish migrated downstream from the riverine tagging and release location to Saginaw Bay, and 37% of these fish emigrated from Saginaw Bay into Lake Huron. Remarkably, 8% of walleye that emigrated from Saginaw Bay were detected at the acoustic receiver line located farthest from the release location more than 350 km away. Most (64%) walleye returned to the Saginaw River in 2012, presumably for spawning. Our findings reveal that fish from this stock use virtually the entirety of U.S. nearshore waters of Lake Huron. PMID:25506913

Biological Sampling and Analysis in Sinclair and Dyes Inlets, Washington: Chemical Analyses for 2007 Puget Sound Biota Study

DOE Office of Scientific and Technical Information (OSTI.GOV)

Brandenberger, Jill M.; Suslick, Carolynn R.; Johnston, Robert K.

2008-10-09

Evaluating spatial and temporal trends in contaminant residues in Puget Sound fish and macroinvertebrates are the objectives of the Puget Sound Ambient Monitoring Program (PSAMP). In a cooperative effort between the ENVironmental inVESTment group (ENVVEST) and Washington State Department of Fish and Wildlife, additional biota samples were collected during the 2007 PSAMP biota survey and analyzed for chemical residues and stable isotopes of carbon (δ13C) and nitrogen (δ15N). Approximately three specimens of each species collected from Sinclair Inlet, Georgia Basin, and reference locations in Puget Sound were selected for whole body chemical analysis. The muscle tissue of specimens selected formore » chemical analyses were also analyzed for δ13C and δ15N to provide information on relative trophic level and food sources. This data report summarizes the chemical residues for the 2007 PSAMP fish and macro-invertebrate samples. In addition, six Spiny Dogfish (Squalus acanthias) samples were necropsied to evaluate chemical residue of various parts of the fish (digestive tract, liver, embryo, muscle tissue), as well as, a weight proportional whole body composite (WBWC). Whole organisms were homogenized and analyzed for silver, arsenic, cadmium, chromium, copper, nickel, lead, zinc, mercury, 19 polychlorinated biphenyl (PCB) congeners, PCB homologues, percent moisture, percent lipids, δ13C, and δ15N.« less

Transcriptome-wide identification, molecular evolution and expression analysis of Toll-like receptor family in a Tibet fish, Gymnocypris przewalskii.

PubMed

Tong, Chao; Lin, Yaqiu; Zhang, Cunfang; Shi, Jianquan; Qi, Hongfang; Zhao, Kai

2015-10-01

Toll-like receptors (TLR) are key components of innate immunity that play significant roles in immune defense against pathogens invasion. Recent frequent outbreaks of the "white spot disease" caused by parasitic infection in farmed Tibetan fishes had resulted in great economic losses. However, to our knowledge, the roles of TLRs in mediating immune response to parasitic infection in Tibetan fishes remain to be determined. Here, we performed data-mining on a widely-farmed Tibetan fish (Gymnocypris przewalskii or Gp) transcriptome to determine the genetic variation and expression pattern of TLRs. We totally obtained 14 GpTLRs and identified 5 with a complete coding sequence. Phylogenetic analysis verified their identities and supported the classification of TLRs into six families as in other vertebrates. The TLR family motifs, such as leucine rich repeat (LRR) and Toll/interleukin (IL)-1 receptor (TIR) domain, are conserved in GpTLR1-5. Selective pressure test demonstrated that all known GpTLRs are under purifying selection, except GpTLR4 underwent positive selection. Further, site model analysis suggested that 11 positively selected sites are found in LRR domain of GpTLR4. Three positively selected sites are located on outside surface of TLR4 3D structure, indicating that function of GpTLR4 may be affected. Tissue specific expression analysis showed all GpTLRs are present in gill, head-kidney and spleen but the relative abundance varied among tissues. In response to parasite Ichthyophthirius multifiliis infection, 5 GpTLR (GpTLR1, -2, -4, -9 and -20) expressions were induced. Intriguingly, GpTLR4 was significantly up-regulated in gills, while GpTLR19 and GpTLR21 unexpectedly showed no any change. In summary, these results revealed the first genomic resources of TLR family and several parasitic infection responsive TLRs in Tibetan fish. These findings provide key information for future studies aiming to understand the molecular mechanisms underlying the immune response to pathogen invasion in Tibetan fishes. Copyright © 2015 Elsevier Ltd. All rights reserved.

A comparative genomic hybridization study in a 46,XX male.

PubMed

Rigola, M Angels; Carrera, Marta; Ribas, Isabel; Egozcue, Josep; Miró, Rosa; Fuster, Carme

2002-07-01

To identify Y chromosome material in an azoospermic male with an XX karyotype. Case report. Faculty of medicine and Centro de Patologia Celular (CPC) medical center. A 33-year-old man with infertility. G-banding, fluorescence in situ hybridization (FISH), polymerase chain reaction (PCR), and comparative genomic hybridization (CGH). FISH for X and Y chromosomes, PCR for the SRYgene and amelogenin gene in the Xp (AMGX) and (AMGY), and losses or gains with CGH. FISH analysis using X and Y chromosome-specific probes showed an X chromosome containing Y chromosome sequences on the top of the short arm; this Y chromosome region was not visible by conventional cytogenetic analysis. PCR amplification of DNA showed the presence of the sex-determining region of the Y chromosome (SRY) and the amelogenin gene in the pseudoautosomal boundary of the X chromosome (AMGX). CGH confirmed the presence of the chromosome region Yp11.2-pter and detected the presence of the two otherwise normal X chromosomes. The two Xpter (XPAR1) pseudoautosomal regions present in this XX male suggest the need to reevaluate XX males using CGH and PCR to characterize the clinical variability in XX males due to genes other than those located on the Y chromosome.

Study on characterization, pathogenicity and histopathology of disease caused by Aeromonas hydrophila in gourami (Osphronemus gouramy)

NASA Astrophysics Data System (ADS)

Rozi; Rahayu, K.; Daruti, D. N.; Stella, M. S. P.

2018-04-01

This study aims to determine the bacterial pathogens that cause disease of the gourami in Blitar (East Java) and Yogyakarta (Central Java), Indonesia. A total of 50 fish samples taken randomly gourami in pond farmers in seventh different locations. There were 18 isolates were isolated and then test Koch’s postulates were injected 0.1 ml/fish intraperitoneally to gourami. Characterization is done by using the biochemical tests. Pathogenicity test carried out on 3 isolates of Aeromonas spp. with intraperitoneal injection at a dose of 104-108 CFU/fish, the value of Lethal Dosage 50 (LD50) using the method Dragstedt Behrens. After the treatment, spleen and kidney samples were processed for histopathological analysis. The all of identified bacteria were 5 isolates Aeromonas hydrophila. Isolates of A. hydrophila in a row AH3 was virulen to gourami with LD50 (4.53 x 106 CFU/fish), while isolate AH4 and AH5 (2.903 x 108, 1.319 x 109 CFU/fish) not be avirulen. Koch’s postulates; 3 isolates are pathogenic with mortality of 40-100 % and 2 are non-pathogenic isolates with a mortality of 0 %. Clinically; ulcers, haemorhagic at the base of the fins, body, mouth and exophthalmia. Histopathologically indecated spleen necrosis, piknosis, necrosis and inflammatory cells in kidney.

Restriction Fragment Length Polymorphism Analysis Reveals High Levels of Genetic Divergence Among the Light Organ Symbionts of Flashlight Fish.

PubMed

Wolfe, C J; Haygood, M G

1991-08-01

Restriction fragment length polymorphisms within the lux and 16S ribosomal RNA gene regions were used to compare unculturable bacterial light organ symbionts of several anomalopid fish species. The method of Nei and Li (1979) was used to calculate phylogenetic distance from the patterns of restriction fragment lengths of the luxA and 16S rRNA regions. Phylogenetic trees constructed from each distance matrix (luxA and 16S rDNA data) have similar branching orders. The levels of divergence among the symbionts, relative to other culturable luminous bacteria, suggests that the symbionts differ at the level of species among host fish genera. Symbiont relatedness and host geographic location do not seem to be correlated, and the symbionts do not appear to be strains of common, free-living, luminous bacteria. In addition, the small number of hybridizing fragments within the 16S rRNA region of the symbionts, compared with that of the free-living species, suggests a decrease in copy number of rRNA operons relative to free-living species. At this level of investigation, the symbiont phylogeny is consistent with the proposed phylogeny of the host fish family and suggests that each symbiont strain coevolved with its host fish species.

50 CFR 25.55 - Refuge admission permits.

Code of Federal Regulations, 2010 CFR

2010-10-01

...-specific permits, at Fish and Wildlife Service Regional and Washington, DC Offices, and at other locations....55 Wildlife and Fisheries UNITED STATES FISH AND WILDLIFE SERVICE, DEPARTMENT OF THE INTERIOR... the holder on the front. ...

Chromosomal Mapping of Repetitive DNA Sequences in the Genus Bryconamericus (Characidae) and DNA Barcoding to Differentiate Populations.

PubMed

Santos, Angélica Rossotti Dos; Usso, Mariana Campaner; Gouveia, Juceli Gonzalez; Araya-Jaime, Cristian; Frantine-Silva, Wilson; Giuliano-Caetano, Lucia; Foresti, Fausto; Dias, Ana Lúcia

2017-06-01

The mapping of repetitive DNA sites by fluorescence in situ hybridization has been widely used for karyotype studies in different species of fish, especially when dealing with related species or even genera presenting high chromosome variability. This study analyzed three populations of Bryconamericus, with diploid number preserved, but with different karyotype formulae. Bryconamericus ecai, from the Forquetinha river/RS, presented three new cytotypes, increasing the number of karyotype forms to seven in this population. Other two populations of Bryconamericus sp. from the Vermelho stream/PR and Cambuta river/PR exhibited interpopulation variation. The chromosome mapping of rDNA sites revealed unique markings among the three populations, showing inter- and intrapopulation variability located in the terminal region. The molecular analysis using DNA barcoding complementing the cytogenetic analysis also showed differentiation among the three populations. The U2 small nuclear DNA repetitive sequence exhibited conserved features, being located in the interstitial region of a single chromosome pair. This is the first report on its occurrence in the genus Bryconamericus. Data obtained revealed a karyotype variability already assigned to the genus, along with polymorphism of ribosomal sites, demonstrating that this group of fish can be undergoing a divergent evolutionary process, constituting a substantive model for studies of chromosomal evolution.

Effects of acclimation on poststocking dispersal and physiological condition of age-1 pallid sturgeon

USGS Publications Warehouse

Oldenburg, E.W.; Guy, C.S.; Cureton, E.S.; Webb, M.A.H.; Gardner, W.M.

2011-01-01

The objective of this study was to evaluate the effects of acclimation to flow and site-specific physicochemical water conditions on poststocking dispersal and physiological condition of age-1 hatchery-reared pallid sturgeon. Fish from three acclimation treatments were radio-tagged, released at two locations (Missouri River and Marias River), and monitored using passive telemetry stations. Marias treatment was acclimated to flow and site-specific physicochemical conditions, Bozeman treatment was acclimated to flow only, and controls had no acclimation (reared under traditional conservation propagation protocol). During both years, fish released in the Missouri River dispersed less than fish released in the Marias River. In 2005, Marias treatment dispersed less and nearly twice as many fish remained in the Missouri River reach as compared to control fish. In 2006, pallid sturgeon dispersed similarly among treatments and the number of fish remaining in the Missouri River reach was similar among all treatments. Differences in poststocking dispersal between years were related to fin curl which was present in all fish in 2005 and only 26% in 2006. Pallid sturgeon from all treatments in both years had a greater affinity for the lower reaches of the Missouri River than the upper reaches. Thus, release site influenced poststocking dispersal more than acclimation treatment. No difference was observed in relative growth rate among treatments. However, acclimation to flow (i.e., exercise conditioning) prevented fat accumulation from rupturing hepatocytes. Acclimation conditions used in this study did not benefit pallid sturgeon unless physiological maladies were present. Overriding all treatment effects was stocking location; thus, natural resource agencies need to consider stocking location carefully to reduce poststocking dispersal. ?? 2011 Blackwell Verlag, Berlin.

VIS – A database on the distribution of fishes in inland and estuarine waters in Flanders, Belgium

PubMed Central

Brosens, Dimitri; Breine, Jan; Van Thuyne, Gerlinde; Belpaire, Claude; Desmet, Peter; Verreycken, Hugo

2015-01-01

Abstract The Research Institute for Nature and Forest (INBO) has been performing standardized fish stock assessments in Flanders, Belgium. This Flemish Fish Monitoring Network aims to assess fish populations in public waters at regular time intervals in both inland waters and estuaries. This monitoring was set up in support of the Water Framework Directive, the Habitat Directive, the Eel Regulation, the Red List of fishes, fish stock management, biodiversity research, and to assess the colonization and spreading of non-native fish species. The collected data are consolidated in the Fish Information System or VIS. From VIS, the occurrence data are now published at the INBO IPT as two datasets: ‘VIS - Fishes in inland waters in Flanders, Belgium’ and ‘VIS - Fishes in estuarine waters in Flanders, Belgium’. Together these datasets represent a complete overview of the distribution and abundance of fish species pertaining in Flanders from late 1992 to the end of 2012. This data paper discusses both datasets together, as both have a similar methodology and structure. The inland waters dataset contains over 350,000 fish observations, sampled between 1992 and 2012 from over 2,000 locations in inland rivers, streams, canals, and enclosed waters in Flanders. The dataset includes 64 fish species, as well as a number of non-target species (mainly crustaceans). The estuarine waters dataset contains over 44,000 fish observations, sampled between 1995 and 2012 from almost 50 locations in the estuaries of the rivers Yser and Scheldt (“Zeeschelde”), including two sampling sites in the Netherlands. The dataset includes 69 fish species and a number of non-target crustacean species. To foster broad and collaborative use, the data are dedicated to the public domain under a Creative Commons Zero waiver and reference the INBO norms for data use. PMID:25685001

Born Knowing: Tentacled Snakes Innately Predict Future Prey Behavior

PubMed Central

Catania, Kenneth C.

2010-01-01

Background Aquatic tentacled snakes (Erpeton tentaculatus) can take advantage of their prey's escape response by startling fish with their body before striking. The feint usually startles fish toward the snake's approaching jaws. But when fish are oriented at a right angle to the jaws, the C-start escape response translates fish parallel to the snake's head. To exploit this latter response, snakes must predict the future location of the fish. Adult snakes can make this prediction. Is it learned, or are tentacled snakes born able to predict future fish behavior? Methods and Findings Laboratory-born, naïve snakes were investigated as they struck at fish. Trials were recorded at 250 or 500 frames per second. To prevent learning, snakes were placed in a water container with a clear transparency sheet or glass bottom. The chamber was placed over a channel in a separate aquarium with fish below. Thus snakes could see and strike at fish, without contact. The snake's body feint elicited C-starts in the fish below the transparency sheet, allowing strike accuracy to be quantified in relationship to the C-starts. When fish were oriented at a right angle to the jaws, naïve snakes biased their strikes to the future location of the escaping fish's head, such that the snake's jaws and the fish's translating head usually converged. Several different types of predictive strikes were observed. Conclusions The results show that some predators have adapted their nervous systems to directly compensate for the future behavior of prey in a sensory realm that usually requires learning. Instead of behavior selected during their lifetime, newborn tentacled snakes exhibit behavior that has been selected on a different scale—over many generations. Counter adaptations in fish are not expected, as tentacled snakes are rare predators exploiting fish responses that are usually adaptive. PMID:20585384

Multiple biomarker responses in Prochilodus lineatus subjected to short-term in situ exposure to streams from agricultural areas in Southern Brazil.

PubMed

Vieira, Carlos Eduardo Delfino; Costa, Patrícia Gomes; Lunardelli, Bruna; de Oliveira, Luciana Fernandes; Cabrera, Liziara da Costa; Risso, Wagner Ezequiel; Primel, Ednei Gilberto; Meletti, Paulo César; Fillmann, Gilberto; Martinez, Claudia Bueno dos Reis

2016-01-15

In order to assess the quality of streams susceptible to contamination by pesticides we apply biochemical and genotoxic biomarkers in the Neotropical fish Prochilodus lineatus submitted to in situ tests. Fish were caged, for 96 h, in two streams located in areas with intensive use of pesticides, the Apertados (AP) and the Jacutinga (JC), and in a small stream (Godoy stream — GD) found inside a forest fragment adjacent to a State Park. Biochemical parameters, such as biotransformation enzymes 7-ethoxyresorufin-O-deethylase (EROD) and glutathione-S-transferase (GST), non-protein thiols (NPSH), lipoperoxidation (LPO), protein carbonylation (PCO) and acetylcholinesterase (AChE) were evaluated in various fish organs, as well as genotoxic biomarkers (damage to DNA and occurrence of micronuclei and erythrocyte nuclear abnormalities). Samples of water and sediment were collected for analysis of metals (Cu, Cr, Pb, Ni, Mn, Cd and Zn), organochloride pesticides, and triazine and glyphosate herbicides. We observed an increase in liver GST activity in fish at AP and gill GST activity in fish at JC. An increase in liver LPO was also observed in fish exposed to AP and JC. The same animals also exhibited increased DNA damage and erythrocyte nuclear abnormalities (ENAs) compared to the fish kept in GD. A number of compounds showed concentrations higher than the permitted levels, in particular, dichlorodiphenyltrichloroethane (DDT), its metabolites dichlorodiphenyldichloroethylene (DDE) and dichlorodiphenyldichloroethane (DDD), hexachlorocyclohexanes (HCH), heptachloride, diclofluanid and aldrins. These pesticides were detected at higher concentrations in water and sediment samples from AP, followed by JC and GD. The Integrated Biomarker Response Index (IBR) indicated that AP and JC (AP: 21.7 > JC: 18.5 > GD: 12.6) have the worst environmental quality. Integrated biomarker analysis revealed that the alterations observed related well with the levels of environmental contaminants, demonstrating the effectiveness of this biomonitoring approach.

Population connectivity and the effectiveness of marine protected areas to protect vulnerable, exploited and endemic coral reef fishes at an endemic hotspot

NASA Astrophysics Data System (ADS)

van der Meer, M. H.; Berumen, M. L.; Hobbs, J.-P. A.; van Herwerden, L.

2015-06-01

Marine protected areas (MPAs) aim to mitigate anthropogenic impacts by conserving biodiversity and preventing overfishing. The effectiveness of MPAs depends on population connectivity patterns between protected and non-protected areas. Remote islands are endemism hotspots for coral reef fishes and provide rare examples of coral reefs with limited fishing pressure. This study explored population genetic connectivity across a network of protected and non-protected areas for the endemic wrasse, Coris bulbifrons, which is listed as "vulnerable" by the IUCN due to its small, decreasing geographic range and declining abundance. Mitochondrial DNA (mtDNA) and microsatellite DNA (msatDNA) markers were used to estimate historic and contemporary gene flow to determine the level of population self-replenishment and to measure genetic and genotypic diversity among all four locations in the species range (south-west Pacific Ocean)—Middleton Reef (MR), Elizabeth Reef (ER), Lord Howe Island (LHI) and Norfolk Island (NI). MPAs exist at MR and LHI and are limited or non-existent at ER and NI, respectively. There was no obvious differentiation in mtDNA among locations, however, msatDNA revealed differentiation between the most peripheral (NI) and all remaining locations (MR, ER and LHI). Despite high mtDNA connectivity ( M = 259-1,144), msatDNA connectivity was limited ( M = 3-9) with high self-replenishment (68-93 %) at all locations. NI is the least connected and heavily reliant on self-replenishment, and the absence of MPAs at NI needs to be rectified to ensure the persistence of endemic species at this location. Other endemic fishes exhibit similar patterns of high self-replenishment across the four locations, indicating that a single spatial management approach consisting of a MPA network protecting part of each location could provide reasonable protection for these species. Thus, the existing network of MPAs at this endemic hotspot appears adequate at some locations, but not at all.

Identification and stocking density of elements phosphate indigo system for fish farming cages nets floating in freshwater district Laut Tawar, Aceh Province

NASA Astrophysics Data System (ADS)

Eriyusni, N.; Siregar, A. Z.

2018-02-01

Lake Laut Tawar is located in Aceh district of Aceh province. The lake were used by the community as a livelihood by making a Cages. One of the elements that influence the fish growth is an element Phosphate (PO4) and other such as, pH, nitrate-nitrite, temperature and others. The lake has undergone changes caused by the use of commercial feed. The sampling locations based on the environmental setting by using method "purposive sampling" from January to May. The results was found of 0.1407 mg/L phosphate with fish expenditure amounting to 23728.61 ton / year using cages of net with number as 92, stocking density at 48,950 of fish and marine area 19.77 Ha. However the standard classes showed is under class II Regulation with No. 82 Year 2001 3400, solid lowest stocking cages tail on the size of 2.5 x 2.5 x 3M (spacious, 181m3) with post-harvest fish expenditure amounted to 1,214 tons of fish/year, the highest 9,250 cages tail on the size e of 5 x 5 x 3m (spacious 123m3) with fish expenditure by 2,800 tones of fish/year. While the results of feed conversion and Phosphate content is 12.70% with the Feed Conversion Ratio (FCR) was 1,635 and 1,491.

Predicting Human Mobility Patterns in Marine Ecosystems: Entropy and Home Range Calculations Based on High-Resolution Fishing Vessel Tracking Data

NASA Astrophysics Data System (ADS)

Murawski, S. A.

2016-02-01

A number of recent studies have developed metrics of human mobility patterns based on georeferenced cell phone records. The studies generally indicate a high degree of predictability in human location and relatively narrow home ranges for most people. In marine ecosystems there are a number of important uses for such calculations including marine spatial planning and predicting the impacts of marine management options such as establishing marine protected areas (MPAs). In this study we use individual fishing vessel satellite tracking (VMS) records ( 30 million records) obtained from commercial reef fish fishing vessels in the Gulf of Mexico during 2006-2014. This period witnessed the establishment of a variety of new regulations including individual fishing quotas (IFQs) for snapper, grouper, and tilefish, establishment of spatial-area closures, and the temporary closure of as much as 85,000 nautical miles of productive fishing grounds associated with the Deepwater Horizon oil spill accident. Vessel positions were obtained, with a location frequency of one hour. From these VMS data we calculated three measures of entropy (degree of repeatability in spatial use), as well as calculated the axis of gyration (home range) for each vessel in the data set. These calculations were related to a variety of descriptor variables including vessel size, distance from home port to predominant fishing grounds, revenue generated on fishing trips, and fishing regulations. The applicability of these calculations to marine resource management applications is discussed.

Bimanual, intra-operative, fluoroscopy-guided removal of nasopharyngeal migratory fish bone from carotid space.

PubMed

Al-Abduwani, J A; Bhargava, D; Sawhney, S; Al-Abri, R

2010-07-01

We report a rare and unusual case of a patient with an ingested fishbone which migrated from the oropharynx to the anterior compartment of the retropharyngeal space and then to the deep neck space in the nasopharynx (i.e. the carotid space). This report aims to describe a successful, minimally invasive method of foreign body removal which avoided both major skull base surgery and any potential life-threatening complications. A secondary aim is to highlight the role of intra-operative fluoroscopy, an under-used tool. We present a 67-year-old man with a history of fish bone impaction but no fish bone visible on plain X-ray or flexible endoscopy. The diagnosis of fish bone lodged in the retropharyngeal space was confirmed by computed tomography. Surgical exploration of the anterior retropharyngeal space failed to locate the fish bone, as it had migrated to a new, unknown location. Intra-operative fluoroscopy was vital for the removal of the fish bone, as it was impossible to see with the naked eye and had migrated from its previously imaged position. The fish bone was finally retrieved bimanually using external pressure on the submandibular region, which displaced the fish bone, and fluoroscopic guidance, which assisted its removal from the nasopharyngeal lumen. To the best of our knowledge, this is the first reported case of bimanual, intra-operative, fluoroscopy-guided, intra-luminal removal of a migratory fish bone from the deep neck space in this region of the nasopharynx.

Mercury and selenium in the food web of Lake Nahuel Huapi, Patagonia, Argentina.

PubMed

Arcagni, Marina; Rizzo, Andrea; Juncos, Romina; Pavlin, Majda; Campbell, Linda M; Arribére, María A; Horvat, Milena; Ribeiro Guevara, Sergio

2017-01-01

Despite located far from point sources of Hg pollution, high concentrations were recorded in plankton from the deep oligotrophic Lake Nahuel Huapi, located in North Patagonia. Native and introduced top predator fish with differing feeding habits are a valuable economic resource to the region. Hence, Hg and Se trophic interactions and pathways to these fish were assessed in the food web of this lake at three sites, using stable nitrogen and carbon isotopes. As expected based on the high THg in plankton, mercury did not biomagnify in the food web of Lake Nahuel Huapi, as most of the THg in plankton is in the inorganic form. As was observed in other aquatic systems, Se did not biomagnify either. When trophic pathways to top predator fish were analyzed, they showed that THg biomagnified in the food chains of native fish but biodiluted in the food chains of introduced salmonids. A more benthic diet, typical of native fish, resulted in higher [THg] bioaccumulation than a more pelagic or mixed diet, as in the case of introduced fish. Se:THg molar ratios were higher than 1 in all the fish species, indicating that Se might be offering a natural protection against Hg toxicity. Copyright © 2016 Elsevier Ltd. All rights reserved.

[Relationship between fishing grounds temporal-spatial distribution of Thunnus obesus and thermocline characteristics in the Western and Central Pacific Ocean].

PubMed

Yang, Sheng Long; Wu, Yu Mei; Zhang, Bian Bian; Zhang, Yu; Fan, Wei; Jin, Shao Fei; Dai, Yang

2017-01-01

A thermocline characteristics contour on a spatial overlay map was plotted using data collected on a monthly basis from Argo buoys and data of monthly CPUE (catch per unit effort) bigeye tuna (Thunnus obesus) long-lines fishery from the Western and Central Pacific Fisheries Commission (WCPFC) to evaluate the relationship between fishing grounds temporal-spatial distribution of bigeye tuna and thermocline characteristics in the Western and Central Pacific Ocean (WCPO). In addition, Numerical methods were used to calculate the optimum ranges of thermocline characteristics of the central fishing grounds. The results showed that the central fishing grounds were mainly distributed between 10° N and 10° S. Seasonal fishing grounds in the south of equator were related to the seasonal variations in the upper boundary temperature, depth and thickness of thermocline. The fishing grounds were observed in areas where the upper boundary depth of thermocline was deep (70-100 m) and the thermocline thickness was more than 60 m. The CPUE tended to be low in area where the thermocline thickness was less than 40 m. The optimum upper boundary temperature range for distribution was 26-29 ℃, and the CPUE was mostly lower than the threshold value (Q3) of central fishing grounds when the temperature was higher than 29 ℃ or lower than 26 ℃. The temporal and spatial distribution of the fishing grounds was influenced by the seasonal variations in upper boundary depth and thermocline thickness. The central fishing grounds in the south of equator disappeared when the upper boundary depth of thermocline decreased and thermocline thickness became thinner. The lower boundary temperature and depth of thermocline and thermocline strength has little variation, but were strongly linked to the location of fishing grounds. The fishing grounds were mainly located between the two high-value zones of the lower boundary depth of thermocline, where the temperature was lower than 13 ℃ and the strength was high. When the depth was more than 300 m or less than 150 m, the lower boundary temperature was more than 17 ℃, or the strength was low, the CPUE tended to be low. The optimum range of thermocline characteristics was calculated using frequency analysis and empirical cumulative distribution function. The results showed that the optimum ranges for upper boundary thermocline temperature and depth were 26-29 ℃ and 70-110 m, the optimum lower boundary thermocline temperature and depth ranges were 11-13 ℃ and 200-280 m, the optimum ranges for thermocline thickness and thermocline strength were 50-90 m and 0.1-0.16 ℃·m -1 , respectively. The paper documented the distribution interval of thermocline characteristics for central fishing ground of the bigeye tuna in WCPO. The results provided a reference for improving the efficiency of pelagic bigeye tuna fishing operation and tuna resource management in WCPO.

Small-Boat Noise Impacts Natural Settlement Behavior of Coral Reef Fish Larvae.

PubMed

Simpson, Stephen D; Radford, Andrew N; Holles, Sophie; Ferarri, Maud C O; Chivers, Douglas P; McCormick, Mark I; Meekan, Mark G

2016-01-01

After a pelagic larval phase, settlement-stage coral reef fish must locate a suitable reef habitat for juvenile life. Reef noise, produced by resident fish and invertebrates, provides an important cue for orientation and habitat selection during this process, which must often occur in environments impacted by anthropogenic noise. We adapted an established field-based protocol to test whether recorded boat noise influenced the settlement behavior of reef fish. Fewer fish settled to patch reefs broadcasting boat + reef noise compared with reef noise alone. This study suggests that boat noise, now a common feature of many reefs, can compromise critical settlement behavior of reef fishes.

A Genetic Linkage Map of the Hermaphrodite Teleost Fish Sparus aurata L.

PubMed Central

Franch, Rafaella; Louro, Bruno; Tsalavouta, Matina; Chatziplis, Dimitris; Tsigenopoulos, Costas S.; Sarropoulou, Elena; Antonello, Jenny; Magoulas, Andonis; Mylonas, Constantinos C.; Babbucci, Massimiliano; Patarnello, Tomaso; Power, Deborah M.; Kotoulas, Giorgos; Bargelloni, Luca

2006-01-01

The gilthead sea bream (Sparus aurata L.) is a marine fish of great importance for fisheries and aquaculture. It has also a peculiar sex-determination system, being a protandrous hermaphrodite. Here we report the construction of a first-generation genetic linkage map for S. aurata, based on 204 microsatellite markers. Twenty-six linkage groups (LG) were found. The total map length was 1241.9 cM. The ratio between sex-specific map lengths was 1:1.2 (male:female). Comparison with a preliminary radiation hybrid (RH) map reveals a good concordance, as all markers located in a single LG are located in a single RH group, except for Ad-25 and CId-31. Comparison with the Tetraodon nigroviridis genome revealed a considerable number of evolutionary conserved regions (ECRs) between the two species. The mean size of ECRs was 182 bp (sequence identity 60–90%). Forty-one ECRs have a known chromosomal location in the pufferfish genome. Despite the limited number of anchoring points, significant syntenic relationships were found. The linkage map presented here provides a robust comparative framework for QTL analysis in S. aurata and is a step toward the identification of genetic loci involved both in the determination of economically important traits and in the individual timing of sex reversal. PMID:16951080

Disturbance of Essential Fish Habitat by Commercial Passive Fishing Gear in the Delaware, Maryland, and Virginia region of the Mid-Atlantic Bight

NASA Astrophysics Data System (ADS)

Schweitzer, C.

2016-02-01

Trap fishing is one of the oldest methods utilized to capture fish, and fish traps are currently one of the most dominant fishing gears utilized by commercial fishermen in the DelMarVa (Delaware, Maryland, Virginia) region. Impacts of traps on benthic habitat and emergent epifauna have become an increasing concern since the 1990's, but despite this, there is little published data regarding trap-habitat interactions. Any substrate necessary for fish spawning, breeding, feeding, or growth to maturity is deemed Essential Fish Habitat (EFH) and in order to increase capture success, traps are often deployed near or on EFH. We assessed the degree of trap impacts via video observations from commercial traps at four common fishing sites in the DelMarVa region, 27-36 km off the coast, at depths of 20-30 m. Two traps within a 20 trap rig were customized by attaching GoPro® cameras to give views in front of the trap, toward the trap front, and to the rear of the trap. Analysis of 123 trap deployments shows that traps often drag across the ocean floor and habitats during the retrieval process. Duration of the dragging phase is strongly correlated with trap position on the line (r2=0.6; p<0.001); traps farther down the line drag significantly longer than traps closer to the boat and first retrieved (1st vs last trap: p<0.01). Dragging significantly increases trap-habitat interactions. Traps with minimal drag have <1% chance of contacting EFH but dragging increases the proportion of traps interacting with EFH to 46%. Observed trap-habitat interactions include: damaging and breaking coral, and running over sea stars, anemones, and bryozoans. Essential fish habitats located off the DelMarVa coast are highly fragmented and sparse, and adverse impacts of passive fishing gear probably affect a large portion of the available habitat.

Modelled drift patterns of fish larvae link coastal morphology to seabird colony distribution.

PubMed

Sandvik, Hanno; Barrett, Robert T; Erikstad, Kjell Einar; Myksvoll, Mari S; Vikebø, Frode; Yoccoz, Nigel G; Anker-Nilssen, Tycho; Lorentsen, Svein-Håkon; Reiertsen, Tone K; Skarðhamar, Jofrid; Skern-Mauritzen, Mette; Systad, Geir Helge

2016-05-13

Colonial breeding is an evolutionary puzzle, as the benefits of breeding in high densities are still not fully explained. Although the dynamics of existing colonies are increasingly understood, few studies have addressed the initial formation of colonies, and empirical tests are rare. Using a high-resolution larval drift model, we here document that the distribution of seabird colonies along the Norwegian coast can be explained by variations in the availability and predictability of fish larvae. The modelled variability in concentration of fish larvae is, in turn, predicted by the topography of the continental shelf and coastline. The advection of fish larvae along the coast translates small-scale topographic characteristics into a macroecological pattern, viz. the spatial distribution of top-predator breeding sites. Our findings provide empirical corroboration of the hypothesis that seabird colonies are founded in locations that minimize travel distances between breeding and foraging locations, thereby enabling optimal foraging by central-place foragers.

Evaluation of the Health Status of the Silverside (Odontesthes bonariensis) at a RAMSAR Site in South America.

PubMed

Ballesteros, M L; Hued, A C; Gonzalez, M; Miglioranza, K S B; Bistoni, M A

2017-07-01

The objective of this work was to evaluate the health status of an economic and ecologically important fish species from Mar Chiquita Lake, a RAMSAR site located in Cordoba, Argentina, relative to the levels of selected persistent organic pollutants (POPs) in lake water and fish tissues. Odontesthes bonariensis was used as a model species, and its health was estimated by means of histological indices in gills and liver. Sampling was performed according to rainy and dry seasons (i.e. dry, rainy and post-rainy). Gill and liver histopathology were evaluated by semi-quantitative indices and morphometric analysis. Although epithelial lifting in gills and lipid degeneration in liver were frequently registered, they are considered as reversible if environmental conditions improve. During rainy and post-rainy seasons fish presented significantly higher scores of liver and total indices. These higher index scores were correlated with increased levels of POPs in gill and liver tissue. Therefore, preventive measures are needed to mitigate the entry of these compounds into the lake.

Spines of the porcupine fish: Structure, composition, and mechanical properties.

PubMed

Su, Frances Y; Bushong, Eric A; Deerinck, Thomas J; Seo, Kyungah; Herrera, Steven; Graeve, Olivia A; Kisailus, David; Lubarda, Vlado A; McKittrick, Joanna

2017-09-01

This paper explores the structure, composition, and mechanical properties of porcupine fish spines for the first time. The spine was found to be composed of nanocrystalline hydroxyapatite, protein (collagen), and water using X-ray diffraction, energy-dispersive X-ray spectroscopy, and thermogravimetric analysis. Microstructures have mineralized fibrillar sheets in the longitudinal direction and in a radial orientation in the transverse direction that were observed using light and electron microscopy. Based on the images, the hierarchical structure of the spine shows both concentric and radial reinforcement. Mechanical properties were obtained using cantilever beam and nanoindentation tests. A tapered cantilever beam model was developed and compared to that of a uniform cantilever beam. The tapered beam model showed that while the stresses experienced were similar to those of the uniform beam, the location of the maximum stress was near the distal region of the beam rather than at the base, which allows the porcupine fish to conserve energy and resources if the spine is fractured. Copyright © 2017 Elsevier Ltd. All rights reserved.

Adaptive capacity of fishing communities at marine protected areas: a case study from the Colombian Pacific.

PubMed

Moreno-Sánchez, Rocío del Pilar; Maldonado, Jorge Higinio

2013-12-01

Departing from a theoretical methodology, we estimate empirically an index of adaptive capacity (IAC) of a fishing community to the establishment of marine protected areas (MPAs). We carried out household surveys, designed to obtain information for indicators and sub-indicators, and calculated the IAC. Moreover, we performed a sensitivity analysis to check for robustness of the results. Our findings show that, despite being located between two MPAs, the fishing community of Bazán in the Colombian Pacific is highly vulnerable and that the socioeconomic dimension of the IAC constitutes the most binding dimension for building adaptive capacity. Bazán is characterized by extreme poverty, high dependence on resources, and lack of basic public infrastructure. Notwithstanding, social capital and local awareness about ecological conditions may act as enhancers of adaptive capacity. The establishment of MPAs should consider the development of strategies to confer adaptive capacity to local communities highly dependent on resource extraction.

Preliminary biochemical observations of fishes inhabiting an acidified lake in Ontario, Canada

Treesearch

W. L. Lockhart; A. Lutz

1976-01-01

Blood serum and other tissues of white suckers (Catostomus commersoni) and other species of fish have been examined in a preliminary effort to understand losses of fish from acid lakes. Maturing females of highly acid George Lake failed to show the normal degree of increase in serum calcium over males captured in the same location. Elevated serum...

Mercury concentrations in fish from a Sierra Nevada foothill reservoir located downstream from historic gold-mining operations

USGS Publications Warehouse

Saiki, Michael K.; Martin, Barbara A.; May, Thomas W.; Alpers, Charles N.

2010-01-01

This study examined mercury concentrations in whole fish from Camp Far West Reservoir, an 830-ha reservoir in northern California, USA, located downstream from lands mined for gold during and following the Gold Rush of 1848–1864. Total mercury (reported as dry weight concentrations) was highest in spotted bass (mean, 0.93 μg/g; range, 0.16–4.41 μg/g) and lower in bluegill (mean, 0.45 μg/g; range, 0.22–1.96 μg/g) and threadfin shad (0.44 μg/g; range, 0.21–1.34 μg/g). Spatial patterns for mercury in fish indicated high concentrations upstream in the Bear River arm and generally lower concentrations elsewhere, including downstream near the dam. These findings coincided with patterns exhibited by methylmercury in water and sediment, and suggested that mercury-laden inflows from the Bear River were largely responsible for contaminating the reservoir ecosystem. Maximum concentrations of mercury in all three fish species, but especially bass, were high enough to warrant concern about toxic effects in fish and consumers of fish.

Contaminants evaluation of Marais des Cygnes National Wildlife Refuge in Kansas and Missouri, USA

NASA Astrophysics Data System (ADS)

Allen, George T.; Nash, Tom J.; Janes, David E.

1995-05-01

At the new Marais des Cygnes National Wildlife Refuge in Linn County, Kansas, and Bates County, Missouri, USA, we evaluated long-lived contaminants before acquisition of the land for the refuge. We sampled sediments at 16 locations and fish at seven locations. The samples were analyzed for metals and for chlorinated hydrocarbon compounds. Selected sediment samples also were analyzed for aliphatic hydrocarbons. Arsenic concentrations in sediment samples from six locations were elevated compared to US norms, but arsenic was not detected in any fish composite. Mercury concentrations in largemouth bass from two locations were comparable to the 85th percentile concentrations in nationwide fish collections. Most sediment concentrations of other metals were unlikely to have detrimental effects on biota. No chlorinated hydrocarbons were detected in any sediment sample. Chlordane compound concentrations in fish composites from two sites at the eastern end of the sampling area were 0.127 and 0.228 μg/g wet weight, respectively, which are high enough to cause concern. Most aliphatic hydrocarbons detected were found at low concentrations and probably were natural in origin. We concluded that there are no serious contaminants concerns within the project area, but past use of arsenical pesticides may mean a legacy of elevated soil arsenic levels in parts of the area and some use of banned pesticides such as chlordane and DDT likely is still occurring near the refuge.

Environmental DNA for freshwater fish monitoring: insights for conservation within a protected area.

PubMed

Fernandez, Sara; Sandin, Miguel M; Beaulieu, Paul G; Clusa, Laura; Martinez, Jose L; Ardura, Alba; García-Vázquez, Eva

2018-01-01

Many fish species have been introduced in wild ecosystems around the world to provide food or leisure, deliberately or from farm escapes. Some of those introductions have had large ecological effects. The north American native rainbow trout ( Oncorhynchus mykiss Walbaum, 1792) is one of the most widely farmed fish species in the world. It was first introduced in Spain in the late 19th century for sport fishing (Elvira 1995) and nowadays is used there for both fishing and aquaculture. On the other hand, the European native brown trout ( Salmo trutta L.) is catalogued as vulnerable in Spain. Detecting native and invasive fish populations in ecosystem monitoring is crucial, but it may be difficult from conventional sampling methods such as electrofishing. These techniques encompass some mortality, thus are not adequate for some ecosystems as the case of protected areas. Environmental DNA (eDNA) analysis is a sensitive and non-invasive method that can be especially useful for rare and low-density species detection and inventory in water bodies. In this study we employed two eDNA based methods (qPCR and nested PCR-RFLP) to detect salmonid species from mountain streams within a protected area, The Biosphere Reserve and Natural Park of Redes (Upper Nalón Basin, Asturias, Northern Spain), where brown trout is the only native salmonid. We also measured some habitat variables to see how appropriate for salmonids the area is. The sampling area is located upstream impassable dams and contains one rainbow trout fish farm. Employing qPCR methodology, brown trout eDNA was detected in all the nine sampling sites surveyed, while nested PCR-RFLP method failed to detect it in two sampling points. Rainbow trout eDNA was detected with both techniques at all sites in the Nalón River' (n1, n2 and n3). Salmonid habitat units and water quality were high from the area studied. In this study, a high quantity of rainbow trout eDNA was found upstream and downstream of a fish farm located inside a Biosphere Reserve. Unreported escapes from the fish farm are a likely explanation of these results. Since salmonid habitat is abundant and the water quality high, the establishment of rainbow trout populations would be favored should escapes occur. Environmental DNA has here proved to be a valuable tool for species detection in freshwater environments, and the probe-based qPCR highly sensitive technique for detection of scarce species. We would recommend this method for routine monitoring and early detection of introduced species within natural reserves.

Spawning migration movements of Lost River and shortnose suckers in the Williamson and Sprague Rivers, Oregon, following the removal of Chiloquin Dam-2009 Annual Report

USGS Publications Warehouse

Ellsworth, Craig M.; VanderKooi, Scott P.

2011-01-01

The Chiloquin Dam was located at river kilometer (rkm) 1.3 on the Sprague River near the town of Chiloquin, Oregon. The dam was identified as a barrier that potentially inhibited or prevented the upstream spawning migrations and other movements of endangered Lost River suckers (Deltistes luxatus), shortnose suckers (Chasmistes brevirostris), and other fish in the Sprague River. Our research objectives in 2009 were to evaluate adult catostomid spawning migration patterns using radio telemetry to identify and describe shifts in spawning area distribution and migration behavior following the removal of Chiloquin Dam in 2008. We attached external radio transmitters to 58 Lost River suckers and 59 shortnose suckers captured at the Williamson River fish weir. A total of 17 radio-tagged Lost River suckers and one radio-tagged shortnose sucker were detected approaching the site of the former Chiloquin Dam but only two radio-tagged fish (one male Lost River sucker and one female Lost River sucker) were detected crossing upstream of the dam site. A lower proportion of radio-tagged shortnose suckers were detected migrating into the Sprague River when compared with previous years. Detections on remote passive integrated transponder (PIT) tag arrays located in the Sprague River show that although the proportion of fish coming into the Sprague River is small when compared to the number of fish crossing the Williamson River fish weir, the number of fish migrating upstream of the Chiloquin Dam site increased exponentially in the first year since its removal. These data will be used in conjunction with larval production and adult spawning distribution data to evaluate the effectiveness of dam removal in order to provide increased access to underutilized spawning habitat located further upstream in the Sprague River and to reduce the crowding of spawning fish below the dam site.

Relationships between water temperatures and upstream migration, cold water refuge use, and spawning of adult bull trout from the Lostine River, Oregon, USA

USGS Publications Warehouse

Howell, P.J.; Dunham, J.B.; Sankovich, P.M.

2010-01-01

Understanding thermal habitat use by migratory fish has been limited by difficulties in matching fish locations with water temperatures. To describe spatial and temporal patterns of thermal habitat use by migratory adult bull trout, Salvelinus confluentus, that spawn in the Lostine River, Oregon, we employed a combination of archival temperature tags, radio tags, and thermographs. We also compared temperatures of the tagged fish to ambient water temperatures to determine if the fish were using thermal refuges. The timing and temperatures at which fish moved upstream from overwintering areas to spawning locations varied considerably among individuals. The annual maximum 7-day average daily maximum (7DADM) temperatures of tagged fish were 16-18 ??C and potentially as high as 21 ??C. Maximum 7DADM ambient water temperatures within the range of tagged fish during summer were 18-25 ??C. However, there was no evidence of the tagged fish using localized cold water refuges. Tagged fish appeared to spawn at 7DADM temperatures of 7-14 ??C. Maximum 7DADM temperatures of tagged fish and ambient temperatures at the onset of the spawning period in late August were 11-18 ??C. Water temperatures in most of the upper Lostine River used for spawning and rearing appear to be largely natural since there has been little development, whereas downstream reaches used by migratory bull trout are heavily diverted for irrigation. Although the population effects of these temperatures are unknown, summer temperatures and the higher temperatures observed for spawning fish appear to be at or above the upper range of suitability reported for the species. Published 2009. This article is a US Governmentwork and is in the public domain in the USA.

Relation between Streamflow of Swiftcurrent Creek, Montana, and the Geometry of Passage for Bull Trout (Salvelinus confluentus)

USGS Publications Warehouse

Auble, Gregor T.; Holmquist-Johnson, Christopher L.; Mogen, Jim T.; Kaeding, Lynn R.; Bowen, Zachary H.

2009-01-01

Operation of Sherburne Dam in northcentral Montana has typically reduced winter streamflow in Swiftcurrent Creek downstream of the dam and resulted in passage limitations for bull trout (Salvelinus confluentus). We defined an empirical relation between discharge in Swiftcurrent Creek between Sherburne Dam and the downstream confluence with Boulder Creek and fish passage geometry by considering how the cross-sectional area of water changed as a function of discharge at a set of cross sections likely to limit fish passage. With a minimum passage window of 15 x 45 cm, passage at the cross sections increased strongly with discharge over the range of 1.2 to 24 cfs. Most cross sections did not satisfy the minimum criteria at 1.2 cfs, 25 percent had no passage at 12.7 cfs, whereas at 24 cfs all but one of 26 cross sections had some passage and 90 percent had more than 3 m of width satisfying the minimum criteria. Sensitivity analysis suggests that the overall results are not highly dependent on exact dimensions of the minimum passage window. Combining these results with estimates of natural streamflow in the study reach further suggests that natural streamflow provided adequate passage at some times in most months and locations in the study reach, although not for all individual days and locations. Limitations of our analysis include assumptions about minimum passage geometry, measurement error, limitations of the cross-sectional model we used to characterize passage, the relation of Sherburne Dam releases to streamflow in the downstream study reach in the presence of ephemeral accretions, and the relation of passage geometry as we have measured it to fish responses of movement, stranding, and mortality, especially in the presence of ice cover.

Histopathological changes induced by Hysterothylacium deardorffoverstreetorum larvae (Nematoda: Raphidascarididae) in Priacanthus arenatus Cuvier, 1829 (Actinopterygii).

PubMed

Kuraiem, Bianca Porto; Knoff, Marcelo; Felizardo, Nilza Nunes; Menezes, Rodrigo Caldas; Gomes, Delir Corrêa; Clemente, Sérgio Carmona de São

2017-01-01

Priacanthus arenatus is a fish that occurs in the waters of the western Atlantic Ocean and has few records of parasitism. This study aimed to report histological changes caused by the larvae of Hysterothylacium deardorffoverstreetorum. Between July and December, 2013, 30 samples of P. arenatus were obtained from fish markets in the cities of Niterói and Rio de Janeiro, state of Rio de Janeiro, Brazil. Fragments of spleen, liver, stomach wall and mesentery tissues containing nodules and free parasites were extracted to histopathological study. Through histological analysis it was verified that these nodules consisted of connective tissue capsules, in which the parasites were located, with granulomatous inflammation mainly comprised of macrophages and lymphocytes. These nodules also consisted of a central portion of acellular amorphous material, formed by concentric layers, which was slightly basophilic and contained tunnels and, sometimes, parasite debris. The presence of tunnels in acellular amorphous material suggests that the larvae are initially located at the center of the nodules and then they migrate to the surface.

Organophosphorus flame retardants and plasticizers in marine and fresh water biota and in human milk.

PubMed

Sundkvist, Anneli Marklund; Olofsson, Ulrika; Haglund, Peter

2010-04-01

The levels and relative proportions of 11 organophosphorus flame retardants and plasticizers (OPs), some of which are reportedly toxic to aquatic organisms, were investigated in human breast milk and samples of fish and mussels from Swedish lakes and coastal areas in order to assess spatial differences in environmental exposure and spatial and temporal differences in human exposure. Some of the biota samples were collected at locations with known potential sources of OPs, but most were collected in background locations. Tris-2-chloroisopropyl phosphate (TCPP) and triphenyl phosphate (TPP) dominated in the biota with levels ranging from 170 to 770 ng g(-1) for TCPP in perch and between 21 and 180 ng g(-1) for TPP. In milk samples, TCPP (median 45 ng g(-1)) and tributyl phosphate (median 12 ng g(-1)) were the most frequently occurring OPs. Among samples of fish from background locations, the concentrations and profiles of most OPs were quite similar, indicating that their sources were diffuse. However, in fish from sample locations near known sources, there were marked differences in OP concentrations and profiles. Fish from a stream receiving surface water from Arlanda airport displayed high levels of OPs (10 200 ng g(-1)) that are commonly used in aircraft hydraulic fluids. Fish collected at points 1 or 2 km downstream of sewage treatment plants showed significantly higher levels of tris(2-butoxyethyl) phosphate (TBEP), one of the most typically abundant OP in effluents from such plants. In the milk samples obtained from women in different towns no distinct differences were detected in OP concentrations or profiles. However, the levels of TBEP tended to be higher in milk collected 10 years ago than in milk collected more recently. However, human exposure to OPs through eating fish or to breastfeeding babies seems to be of minor importance in relation to other potential sources, such as indoor dust inhalation and ingestion.

Design of Fishing Boat for Pelabuhanratu Fishermen as One of Effort to Increase Production of Capture Fisheries

NASA Astrophysics Data System (ADS)

Nur, Iswadi; Joko Suranto, Purwo

2018-02-01

Design of fishing boat for Pelabuhanratu fisherman as one of effort to increase production of capture fisheries. The fishing boat should be proper for the characteristic of its service area, as; capacity of fishing boat up to 60 GT, the fishing boat has minimum 6 fish holds and location of fish hold in the middle body, the fishing boat hull has the bilge keel plate, and the material of hull fishing boat to be made of wooden, steel, aluminium, or fiberglass. Main dimesion of fishing boat is Length Over All = 25.436 m, Breadth = 4.55 m, Draft = 1.6 m, Speed = 12.5 knots. The research had been known every thing that will be supporting the production of capture fisheries like ; amount of fish production = 25.030 ton per day, the fishing port capacity approximately 268.957GT per day, the area of fishing port < 30 hectares, the zone of fish processing industry had not completed, therefore all data research result less than standard of Oceanic Fising Port. So Pelabuhanratu National Fishing Port can not be changed to Oceanic Fishing Port.

Analysis of ingested foreign bodies according to age, type and location: a retrospective observational study.

PubMed

Kim, S Y; Park, B; Kong, I G; Choi, H G

2016-12-01

This study aimed to analyse the types and locations of ingested foreign bodies according to different age groups, from infants to the elderly. A retrospective chart review. Tertiary referral centre. A total of 4682 patients who ingested foreign bodies from January 2006 through February 2014. The frequencies of foreign bodies were investigated in each age group. The types of foreign bodies were categorised into fish bones, chicken bones, seafood, tablets, food, metal, batteries, glass, teeth, plastics and others. The anatomic locations of the objects were classified as the oral cavity, tongue base, tonsils, oropharynx, hypopharynx, oesophagus, stomach and colon. The types, locations and origins of the foreign bodies were analysed according to the age groups. The frequency of foreign body ingestion was high in patients up to 14 years of age, after which the risk of foreign body ingestion markedly decreased. Fish bones were the most commonly suspected foreign bodies in all of the age groups. However, non-food-type foreign bodies were more common in both the young and elderly groups. The tonsils were the most common anatomic site of foreign body impaction except in the group of patients older than 65 years. The stomach and oesophagus were also common locations of foreign bodies in the groups of patients younger than 10 years (10.5%) and older than 65 years (39.4%). The frequency of foreign body ingestion was highest in young children. However, we observed specific age-based characteristics that indicate specific precautions to take to avoid foreign body ingestion. © 2015 John Wiley & Sons Ltd.

Polycyclic aromatic hydrocarbons in water, mussels ( Brachidontes sp., Tagelus sp.) and fish ( Odontesthes sp.) from Bahía Blanca Estuary, Argentina

NASA Astrophysics Data System (ADS)

Arias, Andres H.; Spetter, Carla V.; Freije, Rubén H.; Marcovecchio, Jorge E.

2009-10-01

Polycyclic aromatic hydrocarbons (PAHs), one of the major groups of anthropogenic environmental pollutants, were firstly identified and measured in coastal waters, native mussels and fish of an industrialized South American estuary. The aim of this study was to measure the PAHs concentrations and evaluate distribution and sources in surface seawater, native mussels ( Brachidontes sp. and Tagelus sp.) and fish ( Odontesthes sp.) from various coastal sites of the Bahía Blanca Estuary, in order to put the estuary in a global context and assess it ecotoxicological risk. For this, 40 samples of surface water were collected between August 2004 and February 2006 and analyzed by GC/MS for 17 PAHs, including the 16 EPA priority PAHs. In addition, main physicochemical parameters, nutrients and pigments were simultaneously obtained as key parameters to evaluate possible relationships. Finally, several native mussel communities and fish specimens were also analyzed for PAHs contents. The area of study is located at the Argentinean coast and presents an intensive human and industrial activity at the north shoreline. Total PAHs (Σ17 PAHs) in whole surface waters ranged from undetected to more than 4 μg/l. Seasonal PAHs levels relationship with master parameters suggested a relationship between the phytoplankton microbiological cycling and the dissolved/suspended PAHs occurrence in water. In addition, Cluster Analysis was performed to identify the homogeneous groups of individual PAHs in water and Principal Component Analysis to extract underlying common factors. The result of PCA was similar to that of the cluster analysis; both could differentiate two subsets of pyrogenic sources and a petrogenic origin. PAHs levels in indigenous mussels ( Brachidontes sp. and Tagelus sp.) ranged from 348 to 1597 ng/g (dry weight). Fish specimens ( Odontesthes sp.) showed a mean concentration of 1095 ng/g d.w. in whole tissues. Mussel source ratios and PCA results were in good agreement with the dominant sources assessed for water samples and further enabled the linking of PAHs origins according to the sample location. The Bahía Blanca Estuary wide mean of the PAHs burden in mussels showed that the average PAH contamination level was within the "moderate" category. Levels appeared as ecotoxicologically risk safe for the inner stations; however, they were exceeding various safety criterions at the outer. Results indicate the needing of a systematic monitoring program for the area of study, in order to provide accurately assessment and management of risks for the regional population.

Fish consumption and track to a fish feed formulation

NASA Astrophysics Data System (ADS)

Cai-Juan, Soong; Ramli, Razamin; Rahman, Rosshairy Abdul

2015-12-01

Strategically located in the equator, Malaysia is blessed with plenty of fish supply. The high demand in fish consumption has helped the development in the fishery industry and provided numerous jobs in the secondary sector, contributing significantly to the nation's income. A survey was conducted to understand the trend of current demands for fish for the purpose of designing a feed formulation, which is still limited in this area of study. Results showed that grouper fish in restaurants commanded a very high price compared to other species of fish. Tiger grouper gained the highest demand in most restaurants, while giant grouper had the highest price in restaurants. Due to the demand and challenges to culture this type of fish, a framework for fish feed formulation is proposed. The formulation framework when materialized could be an alternative to the use of trash fish as the feed for grouper.

Movements of fluvial Bonneville cutthroat trout in the Thomas Fork of the Bear River, Idaho-Wyoming

USGS Publications Warehouse

Colyer, W.T.; Kershner, J.L.; Hilderbrand, R.H.

2005-01-01

The majority of interior subspecies of cutthroat trout Oncorhynchus clarkii have been extirpated from large rivers by anthropogenic activities that have fragmented habitats and introduced nonnative competitors. Selective pressures against migratory behaviors and main-stem river occupation, coupled with conservation strategies that isolate genetically pure populations above barriers, have restricted gene flow and prevented expression of the fluvial life history in many populations. Existing knowledge about the movements and home range requirements of fluvial cutthroat trout is, therefore, limited. Our objectives in this study were to (1) determine the extent of seasonal home ranges and mobility of Bonneville cutthroat trout O. c. utah (BCT) in the Thomas Fork and main-stem Bear River and (2) evaluate the role of a water diversion structure functioning as a seasonal migration barrier to fish movement. We implanted 55 BCT in the Thomas Fork of the Bear River, Idaho, with radio transmitters and located them bimonthly in 1999–2000 and weekly in 2000–2001. We found fish to be more mobile than previously reported. Individuals above the diversion barrier occupied substantially larger home ranges than those below the barrier (analysis of variance: P = 0.0003; median = 2,225 m above barrier; median = 500 m below barrier) throughout our study, and they moved more frequently (mean, 0.89 movements/contact; range, 0.57–1.00) from October 2000 through March 2001 than fish below the barrier (mean, 0.45 movements/contact; range, 0.00–1.00). During the spring of both years, we located radio-tagged fish in both upstream and neighboring tributaries as far as 86 km away from our study site. Our results document the existence of a fluvial component of BCT in the Bear River and its tributaries and suggest that successful efforts at conservation of these fish must focus on main-stem habitats and the maintenance of seasonal migration corridors.

Day and night trophic variations of dominant fish species in a lagoon influenced by freshwater seeps.

PubMed

Arceo-Carranza, D; Vega-Cendejas, M E; Hernández de Santillana, M

2013-01-01

The aim of this study was to determine the trophic structure and nycthemeral variations in the diet of dominant fish species (Ariopsis felis, Bairdiella chrysoura, Micropogonias undulatus, Eucinostomus gula, Eucinostomus argenteus, Lagodon rhomboides and Sphoeroides testudineus) in Celestun Lagoon, a biosphere reserve located in the southern Gulf of Mexico, and influenced by freshwater seeps. A total of 1473 stomachs were analysed and nine trophic groups were recorded. Bray-Curtis analyses with analyses of similarity (ANOSIM) statistical tests were used to determine two groups of feeding guilds: zoobenthivores and omnivores, with significant differences between time and habitat. The relationships between fish feeding habits, size class and environmental variables were investigated using canonical correspondence analysis (CCA). Most of the species showed a low niche breadth with high specialization towards amphipod consumption, with the exception of L. rhomboides (0·60), which indicated generalist feeding. This study in a protected area is an important source of information for drawing up conservation policies in relation to the management of aquatic resources, and will aid in the establishment of priority areas for conservation. © 2012 The Authors. Journal of Fish Biology © 2012 The Fisheries Society of the British Isles.

Arsenic and mercury concentrations in marine fish sourced from local fishermen and fish markets in mine-impacted communities in Ratatotok Sub-district, North Sulawesi, Indonesia.

PubMed

Bentley, Keith; Soebandrio, Amin

2017-07-15

Mesel gold mine, Ratatotok Sub-district, North Sulawesi, Indonesia deposited about 4.5millionm 3 of detoxified tailings containing arsenic (As) and mercury (Hg) via a submarine pipeline into Buyat Bay. As and Hg analysis of 216 fish muscle tissue composites from subsistence fishermen, local markets and a reference market confirmed that mean As levels were comparable between locations (range 1.71 to 2.12mg/kg wet weight (ww)) and <10% of the Australia New Zealand standard. Mean Hg concentrations were highest for the artisanal fishermen group (0.23mg/kg ww), similar between the local markets (0.11-0.14mg/kg ww) and lower at the reference market (0.04mg/kg ww). A 12-month fish availability study identified that the results were due to the different coral and deep ocean species assemblages. All mean values were <50% of the FAO/WHO/Codex standard for Hg. The results confirmed that there was no contamination from the deposited submarine tailings. Copyright © 2017 The Authors. Published by Elsevier Ltd.. All rights reserved.

Mooring Design Selection of Aquaculture Cage for Indonesian Ocean

NASA Astrophysics Data System (ADS)

Mulyadi, Y.; Syahroni, N.; Sambodho, K.; Zikra, M.; Wahyudi; Adia, H. B. P.

2018-03-01

Fish production is important for the economy in fishing community and for ensuring food security. Climate change will lead a threat to fish productivity. Therefore, a solution offered is to cultivate certain fish, especially those with high economic value by using offshore aquaculture technology. A Sea Station cage is one of the offshore aquaculture cage model that has been used in some locations. As a floating structure, the Sea Station cage need a mooring system to maintain its position. This paper presents the selection analysis of the mooring system designs of the Sea Station cage model that it is suitable with Indonesia Ocean. There are 3 mooring configurations that are linear array, rectangular array, and 4 points mooring type. The nylon mooring rope type has been selected to be used on the 3 mooring configurations and the rope has a diameter of 104 mm with a breaking force of 2.3 MN. Based on results from comparing the 3 mooring configurations, the best mooring configuration is linear array with the tension on the rope of 217 KN and has the safety factor of 0.2 based on DNVGL OS-E301

Influence of Incision Location on Transmitter Loss, Healing, Survival, Growth, and Suture Retention of Juvenile Chinook Salmon

DOE Office of Scientific and Technical Information (OSTI.GOV)

Panther, Jennifer L.; Brown, Richard S.; Gaulke, Greg L.

2011-11-01

Fisheries research involving surgical implantation of transmitters necessitates the use of methods that minimize transmitter loss and fish mortality and optimize healing of the incision. We evaluated the effects of three incision locations on transmitter loss, healing, survival, growth, and suture retention in juvenile Chinook salmon Oncorhynchus tshawytscha. The three incision locations were (1) on the linea alba (LA incision), (2) adjacent and parallel to the LA (muscle-cutting [MC] incision), and (3) extending from the LA towards the dorsum at a 45° angle, between the parallel lines of myomeres (muscle-sparing [MS] incision). A Juvenile Salmon Acoustic Telemetry System acoustic transmittermore » (0.44 g in air) and a passive integrated transponder tag (0.10 g in air) were implanted into each fish (total N = 936 fish). The fish were held at 12°C or 20°C and were examined weekly for 98 d. The progression of healing among incision locations and the variability in transmitter loss made it difficult to identify one incision location as the best choice. The LA incisions had a much smaller wound extent (area of visible subepidermal tissue) than MC and MS incisions during the first 28 d of the study. In both temperature treatments, apposition of incisions through day 14 was better for LA incisions than for MC and MS incisions. However, MC and MS incisions were less likely than LA incisions to reopen over time and thus were less likely to allow transmitter loss through the incision.« less

Modulation of stress related protein genes in the bass (Epinephelus guaza) caught from the Gulf of Suez, the Red Sea, Egypt.

PubMed

Abdel-Gawad, Fagr Kh; Khalil, Wagdy K B

2013-10-01

Impact of chemical pollution on expression of stress protein genes in the bass Epinephelus guaga collected from several locations including Suez Oil Production Port (Floating port), Atakah Fishing Port, Adabiya Port and Tawfik Port in Suez Governorate, Egypt, was investigated. In the current study, levels of polycyclic aromatic hydrocarbons (PAHs) in water and fish samples collected from Suez Gulf were assessed. In addition, gills and liver tissues of caught bass fish were used to address the interaction between pollution status and the expression of stress-related genes (Hsp70a, Hsp70b, Hsp47, MT and CYP1A). Our analysis demonstrated that levels of PAHs in Floating and Tawfik ports were higher than those found in the Atakah Fishing Port and the Adabiya Port. In addition, MDA and PC contents were significantly higher in gills and liver tissues collected from Floating and Tawfik ports than those collected from Adabiya and Atakah ports. In correlation to the above results, all fish collected from the Floating and Tawfik ports presented a significant increase in Hsp-, MT- and CYP1A-mRNAs. On the other hand, fish samples collected from the Atakah Fishing and Adabiya ports showed no induction of the stress-related genes transcription in such tissues. In conclusion, the current research demonstrates that remarkable increase in PAH contaminants levels in Floating and Tawfik ports are correlated with the levels stress protein-related genes transcription in E. guaga gills and liver tissues. Copyright © 2013 Elsevier Inc. All rights reserved.

Impact of wastewater on fish health: a case study at the Neckar River (Southern Germany) using biomarkers in caged brown trout as assessment tools.

PubMed

Vincze, Krisztina; Scheil, Volker; Kuch, Bertram; Köhler, Heinz R; Triebskorn, Rita

2015-08-01

The present work describes a field survey aiming at assessing the impact of a sewage treatment plant (STP) effluent on fish health by means of biomarkers. Indigenous fish were absent downstream of the STP. To elucidate the reason behind this, brown trout (Salmo trutta f. fario) were exposed in floating steel cages up- and downstream of a STP located at the Neckar River near Tübingen (Southern Germany), for 10 and 30 days. A combination of biomarker methods (histopathological investigations, analysis of the stress protein Hsp70, micronucleus test, B-esterase assays) offered the possibility to investigate endocrine, geno-, proteo- and neurotoxic effects in fish organs. Biological results were complemented with chemical analyses on 20 accumulative substances in fish tissue. Even after short-term exposure, biomarkers revealed clear evidence of water contamination at both Neckar River sites; however, physiological responses of caged brown trout were more severe downstream of the STP. According to this, similar bioaccumulation levels (low μg/kg range) of DDE and 12 polycyclic aromatic hydrocarbons (PAHs) were detected at both sampling sites, while up to fourfold higher concentrations of four PAHs, methyl-triclosan and two synthetic musks occurred in the tissues of downstream-exposed fish. The results obtained in this study suggest a constitutive background pollution at both sites investigated at the Neckar River and provided evidence for the additional negative impact of the STP Tübingen on water quality and the health condition of fish.

Major correlates of mercury in small fish and common loons (Gavia immer) across four large study areas in Canada.

PubMed

Scheuhammer, A M; Lord, S I; Wayland, M; Burgess, N M; Champoux, L; Elliott, J E

2016-03-01

We investigated mercury (Hg) concentrations in small fish (mainly yellow perch, Perca flavescens; ∼60% of fish collected) and in blood of common loons (Gavia immer) that prey upon them during the breeding season on lakes in 4 large, widely separated study areas in Canada (>13 lakes per study area; total number of lakes = 93). Although surface sediments from lakes near a base metal smelter in Flin Flon, Manitoba had the highest Hg concentrations, perch and other small fish and blood of common loon chicks sampled from these same lakes had low Hg concentrations similar to those from uncontaminated reference lakes. Multiple regression modeling with AIC analysis indicated that lake pH was by far the most important single factor influencing perch Hg concentrations in lakes across the four study areas (R(2) = 0.29). The best model was a three-variable model (pH + alkalinity + sediment Se; Wi = 0.61, R(2) = 0.85). A single-variable model (fish Hg) best explained among-lake variability in loon chick blood Hg (Wi = 0.17; R(2) = 0.53). From a toxicological risk perspective, all lakes posing a potential Hg health risk for perch and possibly other small pelagic fish species (where mean fish muscle Hg concentrations exceeded 2.4 μg/g dry wt.), and for breeding common loons (where mean fish muscle Hg concentrations exceeded 0.8 μg/g dry wt., and loon chick blood Hg exceeded 1.4 μg/g dry wt.) had pH < 6.7 and were located in eastern Canada. Crown Copyright © 2016. Published by Elsevier Ltd. All rights reserved.

Mercury in South Carolina fishes, USA.

PubMed

Glover, James B; Domino, Marisa E; Altman, Kenneth C; Dillman, James W; Castleberry, William S; Eidson, Jeannie P; Mattocks, Micheal

2010-04-01

The South Carolina Department of Health and Environmental Control has collected, processed, and analyzed fish tissue total mercury (Hg) since 1976. For this study, skin-on-filet data from 1993 to 2007 were examined to determine biotic, spatial and temporal trends in tissue Hg levels for SC fishes. Because of the relatively high number of tissue Hg values below the analytical detection limits interval censored regression and censored least absolute deviations were used to construct several models to characterize trends. Large pelagic, piscivorous fish species, such as bowfin (Amia calva Linnaeus 1766), had higher levels of tissue Hg than smaller omnivorous species. Estuarine species had relatively low levels of tissue Hg compared to freshwater species, while two large open ocean species, king mackerel (Scomberomorus cavalla Cuvier 1829) and swordfish (Xiphias gladius Linnaeus 1758), had higher tissue Hg readings. For a given fish species, length was an important predictor of tissue Hg with larger individuals having higher levels than smaller individuals. The USEPA Level III ecoregion and water body type from where the fishes were collected were important in predicting the levels of tissue Hg. The Middle Atlantic Coastal Plain ecoregion had fishes with the highest levels of tissue Hg, while the Piedmont and Southern Coastal Plain ecoregions had the lowest. For a given ecoregion, large reservoirs and regulated rivers had fish with lower levels of tissue Hg than unregulated rivers. For reservoirs, the size of the impoundment was a significant predictor of tissue mercury with small reservoirs having higher levels of tissue mercury than large reservoirs. Landuse and water chemistry accounted for differences seen in fish of various ecoregions and waterbody types. Sampling locations associated with a high percentage of wetland area had fish with high levels of tissue Hg. Correlation analysis showed a strong positive relationship between tissue Hg levels and water column iron, total organic carbon, ammonia, and total kjedahl nitrogen, and a negative relationship with alkalinity, dissolved oxygen and pH. Results from principle component analysis revealed patterns between waterbody type and water chemistry variables that suggests hydrologic modification can have profound effects on the levels of fish tissue Hg in riverine systems. From 1993 to 2007, fish tissue Hg levels have trended lower. A spike in tissue Hg levels was observed in 2003-2005. The drying and rewetting of the landscape after the 2002 drought is hypothesized to have caused an increase in the methylation efficiencies of the system.

Myostatin-2 gene structure and polymorphism of the promoter and first intron in the marine fish Sparus aurata: evidence for DNA duplications and/or translocations.

PubMed

Nadjar-Boger, Elisabeth; Funkenstein, Bruria

2011-02-01

Myostatin (MSTN) is a member of the transforming growth factor-ß superfamily that functions as a negative regulator of skeletal muscle development and growth in mammals. Fish express at least two genes for MSTN: MSTN-1 and MSTN-2. To date, MSTN-2 promoters have been cloned only from salmonids and zebrafish. Here we described the cloning and sequence analysis of MSTN-2 gene and its 5' flanking region in the marine fish Sparus aurata (saMSTN-2). We demonstrate the existence of three alleles of the promoter and three alleles of the first intron. Sequence comparison of the promoter region in the three alleles revealed that although the sequences of the first 1050 bp upstream of the translation start site are almost identical in the three alleles, a substantial sequence divergence is seen further upstream. Careful sequence analysis of the region upstream of the first 1050 bp in the three alleles identified several elements that appear to be repeated in some or all sequences, at different positions. This suggests that the promoter region of saMSTN-2 has been subjected to various chromosomal rearrangements during the course of evolution, reflecting either insertion or deletion events. Screening of several genomic DNA collections indicated differences in allele frequency, with allele 'b' being the most abundant, followed by allele 'c', whereas allele 'a' is relatively rare. Sequence analysis of saMSTN-2 gene also revealed polymorphism in the first intron, identifying three alleles. The length difference in alleles '1R' and '2R' of the first intron is due to the presence of one or two copies of a repeated block of approximately 150 bp, located at the 5' end of the first intron. The third allele, '4R', has an additional insertion of 323 bp located 116 bp upstream of the 3' end of the first intron. Analysis of several DNA collections showed that the '2R' allele is the most common, followed by the '4R' allele, whereas the '1R' allele is relatively rare. Progeny analysis of a full-sib family showed a Mendelian mode of inheritance of the two genetic loci. No clear association was found between the two genetic markers and growth rate. These results show for the first time a substantial degree of polymorphism in both the promoter and first intron of MSTN-2 gene in a perciform fish species which points to chromosomal rearrangements that took place during evolution.

Corps of Engineers’ Acquisition of Fish Hatchery Proves Costly.

DTIC Science & Technology

1981-09-18

location, size, esti- mated cost, design , and construction timetables for facilities needed to meet the steelhead production requirements. To limit...hatchery "* * * is not recognized to be one of the more efficient and productive facilities in Idaho due to obvious con- straints in design , construction...agency’s decision to supply the product or service it- self because it would cost less must be supported by a comparativ , cost analysis. According to Corps

Techno-Economic analysis of solar photovoltaic power plant for small scale fish processing in Kota Langsa - a case study

NASA Astrophysics Data System (ADS)

Widodo, S. B.; Hamdani; Rizal, T. A.; Pambudi, N. A.

2018-02-01

In Langsa, fisheries are the sector leaders by fulfilling a capacity of about 6,050 tons per year and on the other hand, fish-aquaculture reaches 1,200 tons per year on average. The fish processing is conducted through catches and aquaculture. The facilities on which this processing takes place are divided into an ice factory unit, a gutting and cutting unit, a drying unit and a curing unit. However, the energy and electricity costs during the production process has become major constraint because of the increase in the fishermen’s production and income. In this study, the potential and cost-effectiveness of photovoltaic solar power plant to meet the energy demands of fish processing units have been analysed. The energy requirements of fish processing units have reached an estimate of 130 kW, while the proposed design of solar photovoltaic electricity generation is of 200 kW in an area of 0,75 hectares. In this analysis, given the closeness between the location of the processing units and the fish supply auctions, the assumption is made that the photovoltaic plants (OTR) were installed on the roof of the building as compared to the solar power plants (OTL) installed on the outside of the location. The results shows that the levelized cost of OTR instalation is IDR 1.115 per kWh, considering 25 years of plant life-span at 10% of discount rate, with a simple payback period of 13.2 years. OTL levelized energy, on the other hand, is at IDR 997.5 per kWh with a simple payback period of 9.6 years. Blood is an essential component of living creatures in the vascular space. For possible disease identification, it can be tested through a blood test, one of which can be seen from the form of red blood cells. The normal and abnormal morphology of the red blood cells of a patient is very helpful to doctors in detecting a disease. With the advancement of digital image processing technology can be used to identify normal and abnormal blood cells of a patient. This research used self-organizing map method to classify the normal and abnormal form of red blood cells in the digital image. The use of self-organizing map neural network method can be implemented to classify the normal and abnormal form of red blood cells in the input image with 93,78% accuracy testing.

Congener Patterns of Persistent Organic Pollutants Establish the Extent of Contaminant Biotransport by Pacific Salmon in the Great Lakes.

PubMed

Gerig, Brandon S; Chaloner, Dominic T; Janetski, David J; Rediske, Richard R; O'Keefe, James P; Moerke, Ashley H; Lamberti, Gary A

2016-01-19

In the Great Lakes, introduced Pacific salmon (Oncorhynchus spp.) can transport persistent organic pollutants (POPs), such as polychlorinated biphenyls (PCBs) and polybrominated diphenyl ethers (PBDEs), to new environments during their spawning migrations. To explore the nature and extent of POP biotransport by salmon, we compared 58 PCB and 6 PBDE congeners found in spawning salmon directly to those in resident stream fish. We hypothesized that stream fish exposed to salmon spawners would have congener patterns similar to those of salmon, the presumed contaminant source. Using permutational multivariate analysis of variance (PERMANOVA) and nonmetric multidimensional scaling (NMDS), we found that POP congener patterns of Pacific salmon varied among regions in the Great Lakes basin (i.e., Lake Huron, Lake Michigan, or Lake Superior), tissue type (whole fish or eggs), and contaminant type (PCB or PBDE). For stream-resident fish, POP congener pattern was influenced by the presence of salmon, location (i.e., Great Lakes Basin), and species identity (i.e., brook trout [Salvelinus fontinalis] or mottled sculpin [Cottus bairdii]). Similarity in congener patterns indicated that salmon are a source of POPs to brook trout in stream reaches receiving salmon spawners from Lake Michigan and Lake Huron but not from Lake Superior. Congener patterns of mottled sculpin differed from those of brook trout and salmon, suggesting that brook trout and mottled sculpin either use salmon tissue to differing degrees, acquire POPs from different dietary sources, or bioaccumulate or metabolize POPs differently. Overall, our analyses identified the important role of salmon in contaminant biotransport but also demonstrated that the extent of salmon-mediated POP transfer and uptake in Great Lakes tributaries is location- and species-specific.

Clam dredging effects and subsequent recovery of benthic communities at different depth ranges.

PubMed

Constantino, R; Gaspar, M B; Tata-Regala, J; Carvalho, S; Cúrdia, J; Drago, T; Taborda, R; Monteiro, C C

2009-03-01

This study aimed to assess the potential effects of clam dredging and the subsequent recovery of the benthic environment. Two experimental areas located at 6 and 18m depth were established in order to analyse whether impacts and recovery of benthic environment are depth-related. Study areas were located within an area closed to dredging and two different plots were established at both depths. One of the plots was subjected to intense clam dredge-fishing, while the other was undisturbed and therefore used as control. Sampling followed a BACI design, with samples for macrobenthic, meiobenthic and sediment particle size analysis being taken by SCUBA divers from both areas before and after fishing stress. For both depths, impacts on the benthic environment were very low resulting in high recovery rates. Nevertheless, at shallower depths communities demonstrated a faster recovery. It was shown that depending on the faunal component used as a bioindicator, different results can be observed. Generally deposit-feeding organisms with scales or chitinous plates and vermiform shape (mainly crustaceans, polychaetes and ophiuroids), without external protection, were the most affected by dredging, while some polychaetes without external protection and with a carnivorous feeding mode seemed to be enhanced by fishing. The low level of perturbations induced by the dredging activities was comparable to the impact of surface waves on the bottom, as experiments were undertaken in wave-dominated environments. The coexistence of storm events during the study period proved to have similar or even more deleterious effects on the benthic environment. It appears that communities from hydrodynamic fishing grounds that are well adapted to natural physical stress are not highly affected by dredging.

The novel use of pop-off satellite tags (PSATs) to investigate the migratory behaviour of European sea bass Dicentrarchus labrax.

PubMed

O'Neill, R; Ó Maoiléidigh, N; McGinnity, P; Bond, N; Culloty, S

2018-05-01

A total of 12 adult European sea bass Dicentrarchus labrax were tagged with pop-off satellite archival tags (PSAT) in Irish coastal waters and in offshore waters in the north-east Celtic Sea between 2015 and 2016. Archived data were successfully recovered from five of the 12 tags deployed, three from fish released in inshore Irish waters and two from fish released offshore in the eastern Celtic Sea. All three fish tagged in inshore waters were found to undertake migrations into the open ocean coinciding with the spawning period. These fish also exhibited fidelity to inshore sites post-migration, returning to the same general location (within c. 73 km, which is roughly the predicted mean accuracy of the method) of their original release site. Although the number of tracks obtained here was limited, some degree of aggregation between inshore and offshore tagged fish in the eastern Celtic Sea was noted during the expected spawning period suggesting PSATs can provide new information on specific spawning locations of European sea bass. © 2018 The Fisheries Society of the British Isles.

[Some ecological aspects of larvivorous fish existing in Cayo Santa María, Cuba].

PubMed

Menéndez Díaz, Zulema; Manso Valdés, Eulises; Castex Rodríguez, Mayda; Fuentes González, Omar; Hernández Contreras, Natividad; García Avila, Israel

2007-01-01

One thousand and three hundred twenty one fish from Cyprinodon variegatus, Gambusia punticulata, Fundulus grandis saguanus. Cubanichthys cubensis y Girardinus metallicus were collected for the purpose of locating and identifying fish of interest in the control of mosquito larvae in Cayo Santa Maria, Villa Clara province. Ecological indexes such as diversity (H') and equity (J') were estimated through a program named BIODIVERSITY Pro v2 and also the contents in the stomach of 341 specimens (25,81%) of the total was analyzed. The most abundant and distributed species in all the sampled sites was C. variegatus followed by G puncticulata. The number of fish of these species showed a differential gradient going from West to East: upward for C. variegatus and downward for G. puncticulata (X2 = 150,60, p< 0,001), being the latter the species that most equitably used the food resources (J' = 0,92) since it consumed 6 of them for food. These indigenous fish that are abundant in natural reservoirs should be taken into account for integrated control plans aimed at mosquito, gnat and horsefly breeding sites found in these locations.

Historical Patterns and Drivers of Spatial Changes in Recreational Fishing Activity in Puget Sound, Washington

PubMed Central

Beaudreau, Anne H.; Whitney, Emily J.

2016-01-01

Small-scale fisheries are the primary users of many coastal fish stocks; yet, spatial and temporal patterns of recreational and subsistence fishing in coastal marine ecosystems are poorly documented. Knowledge about the spatial distribution of fishing activities can inform place-based management that balances species conservation with opportunities for recreation and subsistence. We used a participatory mapping approach to document changes in spatial fishing patterns of 80 boat-based recreational anglers from 1950 to 2010 in Puget Sound, Washington, USA. Hand-drawn fishing areas for salmon, rockfishes, flatfishes, and crabs were digitized and analyzed in a Geographic Information System. We found that recreational fishing has spanned the majority of Puget Sound since the 1950s, with the heaviest use limited to small areas of central and northern Puget Sound. People are still fishing in the same places they were decades ago, with relatively little change in specific locations despite widespread declines in salmon and bottomfish populations during the second half of the 20th century. While the location of core fishing areas remained consistent, the size of those areas and intensity of use changed over time. The size of fishing areas increased through the 2000s for salmon but declined after the 1970s and 1980s for rockfishes, flatfishes, and crabs. Our results suggest that the spatial extent of recreational bottomfishing increased after the 1960s, when the availability of motorized vessels and advanced fish-finding technologies allowed anglers to expand their scope beyond localized angling from piers and boathouses. Respondents offered a wide range of reasons for shifts in fishing areas over time, reflecting substantial individual variation in motivations and behaviors. Changes in fishing areas were most commonly attributed to changes in residence and declines in target species and least tied to fishery regulations, despite the implementation of at least 25 marine preserves since 1970. PMID:27054890

Historical Patterns and Drivers of Spatial Changes in Recreational Fishing Activity in Puget Sound, Washington.

PubMed

Beaudreau, Anne H; Whitney, Emily J

2016-01-01

Small-scale fisheries are the primary users of many coastal fish stocks; yet, spatial and temporal patterns of recreational and subsistence fishing in coastal marine ecosystems are poorly documented. Knowledge about the spatial distribution of fishing activities can inform place-based management that balances species conservation with opportunities for recreation and subsistence. We used a participatory mapping approach to document changes in spatial fishing patterns of 80 boat-based recreational anglers from 1950 to 2010 in Puget Sound, Washington, USA. Hand-drawn fishing areas for salmon, rockfishes, flatfishes, and crabs were digitized and analyzed in a Geographic Information System. We found that recreational fishing has spanned the majority of Puget Sound since the 1950s, with the heaviest use limited to small areas of central and northern Puget Sound. People are still fishing in the same places they were decades ago, with relatively little change in specific locations despite widespread declines in salmon and bottomfish populations during the second half of the 20th century. While the location of core fishing areas remained consistent, the size of those areas and intensity of use changed over time. The size of fishing areas increased through the 2000s for salmon but declined after the 1970s and 1980s for rockfishes, flatfishes, and crabs. Our results suggest that the spatial extent of recreational bottomfishing increased after the 1960s, when the availability of motorized vessels and advanced fish-finding technologies allowed anglers to expand their scope beyond localized angling from piers and boathouses. Respondents offered a wide range of reasons for shifts in fishing areas over time, reflecting substantial individual variation in motivations and behaviors. Changes in fishing areas were most commonly attributed to changes in residence and declines in target species and least tied to fishery regulations, despite the implementation of at least 25 marine preserves since 1970.

Broodstock History Strongly Influences Natural Spawning Success in Hatchery Steelhead (Oncorhynchus mykiss)

PubMed Central

Murdoch, Andrew R.; Hughes, Michael S.; Seamons, Todd R.; LaHood, Eric S.

2016-01-01

We used genetic parentage analysis of 6200 potential parents and 5497 juvenile offspring to evaluate the relative reproductive success of hatchery and natural steelhead (Onchorhynchus mykiss) when spawning in the wild between 2008 and 2011 in the Wenatchee River, Washington. Hatchery fish originating from two prior generation hatchery parents had <20% of the reproductive success of natural origin spawners. In contrast, hatchery females originating from a cross between two natural origin parents of the prior generation had equivalent or better reproductive success than natural origin females. Males originating from such a cross had reproductive success of 26–93% that of natural males. The reproductive success of hatchery females and males from crosses consisting of one natural origin fish and one hatchery origin fish was 24–54% that of natural fish. The strong influence of hatchery broodstock origin on reproductive success confirms similar results from a previous study of a different population of the same species and suggests a genetic basis for the low reproductive success of hatchery steelhead, although environmental factors cannot be entirely ruled out. In addition to broodstock origin, fish size, return time, age, and spawning location were significant predictors of reproductive success. Our results indicate that incorporating natural fish into hatchery broodstock is clearly beneficial for improving subsequent natural spawning success, even in a population that has a decades-long history of hatchery releases, as is the case in the Wenatchee River. PMID:27737000

Fishery Resource Utilization of a Restored Estuarine Borrow Pit: A Beneficial Use of Dredged Material Case Study

DTIC Science & Technology

2012-08-01

W) is a 75-square-mile shallow estuary located in Ocean County, New Jersey. Situated behind a barrier spit and Long Beach Island, the estuary’s...primary connection to the ocean is via Barnegat Inlet (Figure 1). Dredged Holes #5 and #6 are located less than 30.5 m (100 ft) from shore along the...included oyster toadfish (Opsanus tau) (CPUE = 20-25 fish trawl/hr) and summer flounder (Paralichthys dentatus) (CPUE 8 fish trawl/hr), both of

50 CFR Table 24 to Part 679 - Except as Noted, Locations in the Aleutian Islands Habitat Conservation Area Open to Nonpelagic...

Code of Federal Regulations, 2014 CFR

2014-10-01

... 50 Wildlife and Fisheries 13 2014-10-01 2014-10-01 false Except as Noted, Locations in the Aleutian Islands Habitat Conservation Area Open to Nonpelagic Trawl Fishing 24 Table 24 to Part 679... to Nonpelagic Trawl Fishing ER19FE08.009 ER19FE08.010 ER19FE08.011 ER19FE08.012 ER19FE08.013 ER19FE08...

50 CFR Table 24 to Part 679 - Except as Noted, Locations in the Aleutian Islands Habitat Conservation Area Open to Nonpelagic...

Code of Federal Regulations, 2012 CFR

2012-10-01

... 50 Wildlife and Fisheries 13 2012-10-01 2012-10-01 false Except as Noted, Locations in the Aleutian Islands Habitat Conservation Area Open to Nonpelagic Trawl Fishing 24 Table 24 to Part 679... to Nonpelagic Trawl Fishing ER19FE08.009 ER19FE08.010 ER19FE08.011 ER19FE08.012 ER19FE08.013 ER19FE08...

50 CFR Table 24 to Part 679 - Except as Noted, Locations in the Aleutian Islands Habitat Conservation Area Open to Nonpelagic...

Code of Federal Regulations, 2011 CFR

2011-10-01

... 50 Wildlife and Fisheries 11 2011-10-01 2011-10-01 false Except as Noted, Locations in the Aleutian Islands Habitat Conservation Area Open to Nonpelagic Trawl Fishing 24 Table 24 to Part 679... to Nonpelagic Trawl Fishing ER19FE08.009 ER19FE08.010 ER19FE08.011 ER19FE08.012 ER19FE08.013 ER19FE08...

Can the United States be Partners with China?

DTIC Science & Technology

2013-04-16

However, China threatens this stability with its recent territorial 13 disputes and perceived aggression towards Japanese fishing vessels in and around...the Senkaku Islands. The Senkaku islands dispute is not just about fishing rights. The islands are strategically located where whoever occupies...for commercial fishing and economic trade, then Japan will have no option but to amend its constitution and develop offensive military capabilities or

Engineering Support for the Development of a Submersible Fish Cage for Open Ocean Aquaculture

DTIC Science & Technology

2007-01-01

32 Appendix B: Feed Hose Buoy Components ................................................................. 33...ballasting systems (for test purposes) located in the upper rim section and airlift. Another component of the system includes a feed hose buoy used...to deliver pellets to fish in the cage while the system is submerged. Since the feed hose buoy was not critical in the development of the fish

Perfluorinated compounds in human blood, water, edible freshwater fish, and seafood in China: daily intake and regional differences in human exposures.

PubMed

Zhang, Tao; Sun, Hongwen; Lin, Yan; Wang, Lei; Zhang, Xianzhong; Liu, Ya; Geng, Xia; Zhao, Lijie; Li, Fasong; Kannan, Kurunthachalam

2011-10-26

Despite the growing public interest in perfluorinated compounds (PFCs), very few studies have reported the sources and pathways of human exposure to these compounds in China. In this study, concentrations of 10 PFCs were measured in human blood, water (tap water and surface water), freshwater fish, and seafood samples collected from China. On the basis of the data, we calculated daily intakes of PFCs, regional differences in human exposures, and potential risks associated with ingestion of PFCs from diet, drinking water, and indoor dust for the Chinese population. Perfluorooctane sulfonate (PFOS) was the most predominant PFC found with a mean concentration of 12.5 ng/mL in human blood from Tianjin and 0.92 ng/g wet wt in freshwater fish and seafood; perfluorooctanoic acid (PFOA) was the major PFC found in drinking water at a concentration range of 0.10 to 0.92 ng/L. The estimated daily intake of PFOS and PFOA via fish and seafood consumption (EDI(fish&seafood)) ranged from 0.10 to 2.51 and 0.13 to 0.38 ng/kg bw/day, respectively, for different age groups (i.e., toddlers, adolescents and children, and adults) from selected locations (i.e., Tianjin, Nanchang, Wuhan, and Shenyang). The EDI(fish&seafood) of PFCs decreased (p < 0.05) with age. The estimated daily intake of PFOS and PFOA via drinking water consumption (EDI(drinking water)) ranged from 0.006 to 0.014 and 0.010 to 0.159 ng/kg bw/day, respectively. Comparison of EDI(fish&seafood) and EDI(drinking water) values with those of the modeled total dietary intake (TDI) of PFCs by adults from Tianjin, Nanchang, Wuhan, and Shenyang showed that contributions of fish and seafood to TDI of PFOS varied depending on the location. Fish and seafood accounted for 7%, 24%, 80%, and 84% of PFOS intake in Nanchang, Shenyang, Wuhan, and Tianjin, respectively, suggesting regional differences in human exposure to PFOS. Drinking water was a minor source of PFOS (<1%) exposure in adults from all the study locations.

Correlation between macrobenthic structure (biotic) and water-sediment characteristics (abiotic) adjacent aquaculture areas at Tembelas Island, indonesia

NASA Astrophysics Data System (ADS)

Sharani, Jeanny; Hidayat, Jafron W.; Putro, Sapto P.

2018-05-01

Macrobenthic community play important role in sedimentary habitats as a part of food chain. Their structure may be influenced by environmental characteristic spatially and temporally. The purpose of this study is to access the correlation between macrobenthic structure (biotic) and water-sediment characteristics (abiotic) adjacent aquaculture areas at Tembelas Island, Indonesia. Water and sediments samples were taken twice, where the first and second sampling time were taken in June and October 2016, respectively. Samples were taken in the area of fish farming at coastal area of policulture/IMTA (as Location I), site of 1 km away from fish farming area as a reference site (as Location II), and monoculture sites (as Location III), with three stations for each location. Data of abiotic parameters included the composition of sediment substrate and DO, pH, salinity, temperature, and. Sediment samples were taken using Ekman grab. The organisms were 1 mm -size sieved and fixed using 10% formalin for further analysis, i.e. sorting, preserving, enumerating, identifying, and grouping. The relationship between biotics (macrobentos) and abiotics (physical-chemical factors) was assessed using a non-parametric multivariate procedure (BIOENV). This study found 61 species consisting of 46 families and 5 classes of macrobenthos. The most common classes were member of Mollusca and Polychaeta. Total nitrogen, silt, and clay were the abiotic factors most influencing macrobenthic structure (BIO-ENV; r = 0.46; R2 = 21.16%).

Host records and tissue locations for Diplostomum mordax (metacercariae) inhabiting the cranial cavity of fishes from Lake Titicaca, Peru.

PubMed

Heckmann, R A

1992-06-01

Metacercariae of Diplostomum mordax were found in the cranial cavity of Orestias agasii, Orestias olivaceous, Orestias luteus, and Basilichthys bonariensis, fishes from Lake Titicaca, Peru. Metacercariae were not found in Oncorhynchus mykiss introduced into the lake during 1939 and 1940. Compression of neural tissue within and on the surface of the brain was observed in all infected fishes. Metacercariae migrating into the cerebrum and cerebellum of the piscine host caused hemorrhaging, cell necrosis, inflammation, fiber formation, and nerve fiber disruption. The presence of D. mordax in B. bonariensis and the 3 species of Orestias constitute new host records. Infections in the cerebrum and cerebellum add new information on specific parasite location.

Abundance, stock origin, and length of marked and unmarked juvenile Chinook salmon in the surface waters of greater Puget Sound

USGS Publications Warehouse

Rice, C.A.; Greene, C.M.; Moran, P.; Teel, D.J.; Kuligowski, D.R.; Reisenbichler, R.R.; Beamer, E.M.; Karr, J.R.; Fresh, K.L.

2011-01-01

This study focuses on the use by juvenile Chinook salmon Oncorhynchus tshawytscha of the rarely studied neritic environment (surface waters overlaying the sublittoral zone) in greater Puget Sound. Juvenile Chinook salmon inhabit the sound from their late estuarine residence and early marine transition to their first year at sea. We measured the density, origin, and size of marked (known hatchery) and unmarked (majority naturally spawned) juveniles by means of monthly surface trawls at six river mouth estuaries in Puget Sound and the areas in between. Juvenile Chinook salmon were present in all months sampled (April-November). Unmarked fish in the northern portion of the study area showed broader seasonal distributions of density than did either marked fish in all areas or unmarked fish in the central and southern portions of the sound. Despite these temporal differences, the densities of marked fish appeared to drive most of the total density estimates across space and time. Genetic analysis and coded wire tag data provided us with documented individuals from at least 16 source populations and indicated that movement patterns and apparent residence time were, in part, a function of natal location and time passed since the release of these fish from hatcheries. Unmarked fish tended to be smaller than marked fish and had broader length frequency distributions. The lengths of unmarked fish were negatively related to the density of both marked and unmarked Chinook salmon, but those of marked fish were not. These results indicate more extensive use of estuarine environments by wild than by hatchery juvenile Chinook salmon as well as differential use (e.g., rearing and migration) of various geographic regions of greater Puget Sound by juvenile Chinook salmon in general. In addition, the results for hatchery-generated timing, density, and length differences have implications for the biological interactions between hatchery and wild fish throughout Puget Sound. ?? American Fisheries Society 2011.

Opisthorchiasis in infant remains from the medieval Zeleniy Yar burial ground of XII-XIII centuries AD

PubMed Central

Slepchenko, Sergey Mikhailovich; Gusev, Alexander Vasilevich; Ivanov, Sergey Nikolaevich; Svyatova, Evgenia Olegovna

2015-01-01

We present a paleoparasitological analysis of the medieval Zeleniy Yar burial ground of the XII-XII centuries AD located in the northern part of Western Siberia. Parasite eggs, identified as eggs of Opisthorchis felineus, were found in the samples from the pelvic area of a one year old infant buried at the site. Presence of these eggs in the soil samples from the infant’s abdomen suggests that he/she was infected with opisthorchiasis and imply consumption of undercooked fish. Ethnographic records collected among the population of the northern part of Western Siberia reveal numerous cases of feeding raw fish to their children. Zeleniy Yar case of opisthorchiasis suggests that this dietary custom has persisted from at least medieval times. PMID:26602874

Distribution and community structure of ichthyoplankton in Laguna Madre seagrass meadows: Potential impact of seagrass species change

USGS Publications Warehouse

Tolan, J.M.; Holt, S.A.; Onuf, C.P.

1997-01-01

Seasonal ichthyoplankton surveys were made in the lower Laguna Madre, Texas, to compare the relative utilization of various nursery habitats (shoal grass, Halodule wrightii; manatee grass, Syringodium filiforme;, and unvegetated sand bottom) for both estuarine and offshore-spawned larvae. The species composition and abundance of fish larvae were determined for each habitat type at six locations in the bay. Pushnet ichthyoplankton sampling resulted in 296 total collections, yielding 107,463 fishes representing 55 species in 24 families. A broad spectrum of both the biotic and physical habitat parameters were examined to link the dispersion and distribution of both pre-settlement and post-settlement larvae to the utilization of shallow seagrass habitats. Sample sites were grouped by cluster analysis (Ward's minimum variance method) according to the similarity of their fish assemblages and subsequently examined with a multiple discriminant function analysis to identify important environmental variables. Abiotic environmental factors were most influential in defining groups for samples dominated by early larvae, whereas measures of seagrass complexity defined groups dominated by older larvae and juveniles. Juvenile-stage individuals showed clear habitat preference, with the more shallow Halodule wrightii being the habitat of choice, whereas early larvae of most species were widely distributed over all habitats. As a result of the recent shift of dominance from Halodule wrightii to Syringodium filiforme, overall reductions in the quality of nursery habitat for fishes in the lower Laguna Madre are projected.

Impact of metals on histopathology and expression of HSP 70 in different tissues of Milk fish (Chanos chanos) of Kaattuppalli Island, South East Coast, India.

PubMed

Rajeshkumar, Sivakumar; Munuswamy, Natesan

2011-04-01

Histological and Immunohistochemical studies were carried out to document the possible impact of heavy metal contamination in different tissues of Chanos chanos. Heavy metals such as Cu, Pb, Zn, Cd, Mn and Fe were predominant in water, sediment and biota of Kaattuppalli Island and varied significantly between two different sites. Histological changes such as swelling of muscle fiber and break down of muscle bundles were noted in the muscle. Similarly gill filament cell proliferation, increase in intercellular spaces and primary and secondary lamellar epithelium were evident in gills. The hepatocytes showed damage of central vein and rupture of irregular hepatic plate with more number of vacuoles in the fish collected from polluted site compared to that from the less polluted site. The impact of pollution was also assessed in different tissues by immunohistochemistry using primary antibody (mouse monoclonal HSP70 antibody 1:2000) and secondary antibody (HRP conjugated antibody) for expression of stress protein. Immunostaining analysis showed expression of HSP70 with high intensity in the tissues of fish collected from polluted site compared to less polluted sites. Further, HSP70 positive cells were analyzed from six locations per fish tissue section. One-way analysis of variance (ANOVA) followed by least significant difference (LSD) was used to check if the expression was significant. Results indicate that the values are statistically significant at the two different sampling sites (P<0.05). Copyright © 2011 Elsevier Ltd. All rights reserved.

Survival and passage of ingested New Zealand mudsnails through the intestinal tract of rainbow trout

USGS Publications Warehouse

Bruce, R. Louise; Moffitt, Christine M.; Dennis, Brian

2009-01-01

We conducted laboratory trials to determine the transit time and survival of New Zealand mudsnails Potamopyrgus antipodarum in the gastrointestinal tract of rainbow trout Oncorhynchus mykiss. To assess the rate of snail passage, we force-fed groups of fish a known quantity of snails and then held them in tanks. At selected intervals we removed individual fish from the test tanks and recorded the number of snails, their condition (live or dead), and their location in the gastrointestinal tract (stomach, anterior intestine, and posterior intestine). Feces were removed from tanks and examined for live snails. We repeated evaluations of passage rate and snail survival to determine the effects of varying the number of snails ingested, fish size, snail size, and feeding a commercial diet to fish after snail ingestion. We plotted and modeled gut evacuation using a stochastic model for ordinal data to consider each test variable. Snail passage rates were faster in fish that were fed smaller snails. Surprisingly, fish fed snails and then administered rations of commercial fish feed retained the snails longer in their stomach than did fish that were not administered fish feeds after being fed snails. Increased retention time of snails in the stomach decreased the probability of snail survival when voided in fecal material. Snails that passed through the gastrointestinal tract within 12–24 h of ingestion were often recovered live in fecal samples. However, no live snails were recovered from the posterior intestine or fecal material collected 24 h after ingestion. Using our results we propose potential management options that could reduce the risks of introducing live snails into new locations when stocking fish from infested hatcheries.

Summary of fluvial sediment collected at selected sites on the Gunnison River in Colorado and the Green and Duchesne Rivers in Utah, Water Years 2005-2008

USGS Publications Warehouse

Williams, Cory A.; Gerner, Steven J.; Elliott, John G.

2009-01-01

The Colorado River Basin provides habitat for 14 native fish, including four endangered species protected under the Federal Endangered Species Act of 1973 - Colorado pikeminnow (Ptychocheilus lucius), razorback sucker (Xyrauchen texanus), bonytail (Gila elegans), and humpback chub (Gila cypha). These endangered fish species once thrived in the Colorado River system, but water-resource development, including the building of numerous diversion dams and several large reservoirs, and the introduction of nonnative fish, resulted in large reductions in the numbers and range of the four species. Knowledge of sediment dynamics in river reaches important to specifc life-stages of the endangered fishes is critical to understanding the effects of flow regimes on endangered fish habitats. The U.S. Geological Survey, in cooperation with the Upper Colorado River Endangered Fish Recovery Program, Bureau of Reclamation, U.S. Fish and Wildlife Service, and Wyoming State Engineer's Office, implemented daily sediment sampling at three locations in critical habitat reaches in the Upper Colorado River Basin. This report presents a summary of data collected at these sites, including water and suspended-sediment discharge, streambed compositions, and channel and flood-plain topography. The locations are at U.S. Geological Survey streamflow-gaging stations 09152500, Gunnison River near Grand Junction, Colorado; 09261000, Green River near Jensen, Utah; and 09302000, Duchesne River near Randlett, Utah.

Spatial and temporal use of a spawning site in the middle green river by wild and hatchery-reared razorback suckers

USGS Publications Warehouse

Modde, T.; Bowen, Z.H.; Kitcheyan, D.C.

2005-01-01

The population of endangered razorback suckers Xyrauchen texanus in the middle Green River (upper Colorado River basin) has declined during the last 40 years. The apparent cause for this decline is a lack of successful recruitment. This study used radiotelemetry to evaluate the ability of hatchery-reared razorback suckers to locate spawning areas where wild fish congregate during the ascending hydrographic limb of the snowmelt runoff. Hatchery-reared razorback suckers appeared to show similar reproductive behavior to wild fish. Both wild and hatchery-reared fish were found near the middle Green River spawning area between 1 and 25 May 2000. Hatchery fish occupied the same areas on the spawning site as wild fish, and remained on the spawning site during both nocturnal and diurnal hours. Males were more abundant on the spawning area than females, but the few females captured tended to stage away from the primary spawning area. The results from this study suggest hatchery-reared fish are capable of responding to natural cues that prompt spawning aggregations and are successful in locating existing spawning aggregations of wild fish. Given attention to stocking criteria, including genetic diversity and the size and time of stocking, the challenges of recovering razorback suckers will center on those factors that led to the population declines, particularly the survival of early life stages in off-channel habitats. ?? American Fisheries Society 2005.

Genome-scan analysis for quantitative trait loci in an F2 tilapia hybrid.

PubMed

Cnaani, A; Zilberman, N; Tinman, S; Hulata, G; Ron, M

2004-09-01

We searched for genetic linkage between DNA markers and quantitative trait loci (QTLs) for innate immunity, response to stress, biochemical parameters of blood, and fish size in an F2 population derived from an interspecific tilapia hybrid (Oreochromis mossambicusx O. aureus). A family of 114 fish was scanned for 40 polymorphic microsatellite DNA markers and two polymorphic genes, covering approximately 80% of the tilapia genome. These fish had previously been phenotyped for seven immune-response traits and six blood parameters. Critical values for significance were P <0.05 with the false discovery rate (FDR) controlled at 40%. The genome-scan analysis resulted in 35 significant marker-trait associations, involving 26 markers in 16 linkage groups. In a second experiment, nine markers were re-sampled in a second family of 79 fish of the same species hybrid. Seven markers (GM180, GM553, MHC-I, UNH848, UNH868, UNH898 and UNH925) in five linkage groups (LG 1, 3, 4, 22 and 23) were associated with stress response traits. An additional six markers (GM47, GM552, UNH208, UNH881, UNH952, UNH998) in five linkage groups (LG 4, 16, 19, 20 and 23) were verified for their associations with immune response traits, by linkage to several different traits. The portion of variance explained by each QTL was 11% on average, with a maximum of 29%. The average additive effect of QTLs was 0.2 standard deviation units of stress response traits and fish size, with a maximum of 0.33. In three linkage groups (LG 1, 3 and 23) markers were associated with stress response, body weight and sex determination, confirming the location of QTLs reported by several other studies.

Breast cancer evaluation by fluorescent dot detection using combined mathematical morphology and multifractal techniques

PubMed Central

2011-01-01

Background Fluorescence in situ hybridization (FISH) is very accurate method for measuring HER2 gene copies, as a sign of potential breast cancer. This method requires small tissue samples, and has a high sensitivity to detect abnormalities from a histological section. By using multiple colors, this method allows the detection of multiple targets simultaneously. The target parts in the cells become visible as colored dots. The HER-2 probes are visible as orange stained spots under a fluorescent microscope while probes for centromere 17 (CEP-17), the chromosome on which the gene HER-2/neu is located, are visible as green spots. Methods The conventional analysis involves the scoring of the ratio of HER-2/neu over CEP 17 dots within each cell nucleus and then averaging the scores for a number of 60 cells. A ratio of 2.0 of HER-2/neu to CEP 17 copy number denotes amplification. Several methods have been proposed for the detection and automated evaluation (dot counting) of FISH signals. In this paper the combined method based on the mathematical morphology (MM) and inverse multifractal (IMF) analysis is suggested. Similar method was applied recently in detection of microcalcifications in digital mammograms, and was very successful. Results The combined MM using top-hat and bottom-hat filters, and the IMF method was applied to FISH images from Molecular Biology Lab, Department of Pathology, Wielkoposka Cancer Center, Poznan. Initial results indicate that this method can be applied to FISH images for the evaluation of HER2/neu status. Conclusions Mathematical morphology and multifractal approach are used for colored dot detection and counting in FISH images. Initial results derived on clinical cases are promising. Note that the overlapping of colored dots, particularly red/orange dots, needs additional improvements in post-processing. PMID:21489192

Microplastic litter composition of the Turkish territorial waters of the Mediterranean Sea, and its occurrence in the gastrointestinal tract of fish.

PubMed

Güven, Olgaç; Gökdağ, Kerem; Jovanović, Boris; Kıdeyş, Ahmet Erkan

2017-04-01

Microplastic pollution of marine environment is receiving increased publicity over the last few years. The present survey is, according to our knowledge, the survey with the largest sample size analyzed, to date. In total, 1337 specimens of fish were examined for the presence of plastic microlitter representing 28 species and 14 families. In addition, samples of seawater and sediment were also analyzed for the quantification of microplastic in the same region. Samples of water/sediment were collected from 18 locations along the Mediterranean coast of Turkey. 94% of all collected plastic microlitter from the sea was in the size range between 0.1 and 2.5 mm, while the occurrence of other sizes was rare. The quantity of microplastic particles in surface water samples ranged from 16 339 to 520 213 per km 2 . Fish were collected from 10 locations from which 8 were either shared with or situated in the proximity of water/sediment sampling locations. A total of 1822 microplastic particles were extracted from stomach and intestines of fish. Majority of ingested particles were represented by fibers (70%) and hard plastic (20.8%), while the share of other groups: nylon (2.7%), rubber (0.8%) and miscellaneous plastic (5.5%) were low. The blue color of plastic was the most dominant color. 34% of all examined fish had microplastic in the stomach. On average, fish which had microplastic contained 1.80 particles per stomach. 41% of all fish had microplastic in the intestines with an average of 1.81 particles per fish. 771 specimens contained microplastic in either stomach and/or intestines representing 58% of the total sample with an average of 2.36 particles per fish. Microplastic was found in all species/families that had sample size of at least 2 individuals. The number of particles present in either stomach or intestines ranged between 1 and 35. Ingested microplastic had an average diameter ±SD of 656 ± 803 μm, however particles as small as 9 μm were detected. The trophic level of fish species had no influence whatsoever on the amount of ingested microplastic. Pelagic fish ingested more microplastic than demersal species. In general, fish that ingested higher number of microplastic particles originated from the sites that also had a higher particle count in the seawater and sediment. Copyright © 2017 Elsevier Ltd. All rights reserved.

Constellation of phase singularities in a speckle-like pattern for optical vortex metrology applied to biological kinematic analysis.

PubMed

Wang, Wei; Qiao, Yu; Ishijima, Reika; Yokozeki, Tomoaki; Honda, Daigo; Matsuda, Akihiro; Hanson, Steen G; Takeda, Mitsuo

2008-09-01

A novel technique for biological kinematic analysis is proposed that makes use of the pseudophase singularities in a complex signal generated from a speckle-like pattern. In addition to the information about the locations and the anisotropic core structures of the pseudophase singularities, we also detect the spatial structures of a cluster of phase singularities, which serves as a unique constellation characterizing the mutual position relation between the individual pseudophase singularities. Experimental results of in vivo measurements for a swimming fish along with its kinematic analysis are presented, which demonstrate the validity of the proposed technique.

Review: Analysis of the evolutionary convergence for high performance swimming in lamnid sharks and tunas.

PubMed

Bernal, D; Dickson, K A; Shadwick, R E; Graham, J B

2001-06-01

Elasmobranchs and bony fishes have evolved independently for more than 400 million years. However, two Recent groups, the lamnid sharks (Family Lamnidae) and tunas (Family Scombridae), display remarkable similarities in features related to swimming performance. Traits separating these two groups from other fishes include a higher degree of body streamlining, a shift in the position of the aerobic, red, locomotor muscle that powers sustained swimming to a more anterior location in the body and nearer to the vertebral column, the capacity to conserve metabolic heat (i.e. regional endothermy), an increased gill surface area with a decreased blood-water barrier thickness, a higher maximum blood oxygen carrying capacity, and greater muscle aerobic and anaerobic enzyme activities at in vivo temperatures. The suite of morphological, physiological, and biochemical specializations that define "high-performance fishes" have been extensively characterized in the tunas. This review examines the convergent features of lamnid sharks and tunas in order to gain insight into the extent that comparable environmental selection pressures have led to the independent origin of similar suites of functional characteristics in these two distinctly different taxa. We propose that, despite differences between teleost and elasmobranch fishes, lamnid sharks and tunas have evolved morphological and physiological specializations that enhance their swimming performance relative to other sharks and most other high performance pelagic fishes.

Fish Creek Rim Research Natural Area: guidebook supplement 50

Treesearch

Reid Schuller; Ian Grinter

2016-01-01

This guidebook describes major biological and physical attributes of the 3531-ha (8,725-ac) Fish Creek Rim Research Natural Area located within the Northern Basin and Range ecoregion and managed by the Bureau of Land Management, Lakeview District (USDI BLM 2003).

Concentrations of elements in fish fillets, fish muscle plugs, and crayfish from the 2007 Missouri Department of Conservation General Contaminant Monitoring Program

USGS Publications Warehouse

May, Thomas W.; Walther, Michael J.; Brumbaugh, William G.; McKee, Michael J.

2009-01-01

This report presents the results of a contaminant monitoring survey conducted annually by the Missouri Department of Conservation to examine the levels of selected elemental contaminants in fish fillets, fish muscle plugs, and crayfish. Fillets of channel catfish (Ictalurus punctatus), bass (Micropterus salmoides, Micropterus dolomieu, Morone chrysops), walleye (Sander vitreus), common carp (Cyprinus carpio), lake sturgeon (Acipenser fulvescens), northern hog sucker (Hypentelium nigricans), and rainbow trout (Oncorhynchus mykiss) were collected from 21 sites as part of the Department's Fish Contaminant Monitoring Program. Long-pincered crayfish (Orconectes longidigitus) were collected from one site to assess trophic transfer of metals to fish. Fish muscle plugs were collected from smallmouth bass (Micropterus dolomieu) at two different locations from one site.

Prenatal identification of i(Yp) by molecular cytogenetic analysis

DOE Office of Scientific and Technical Information (OSTI.GOV)

Wang, B.T.; Peng, W.; Williams, J. III

1994-09-01

An isochromosome derived from the short arm of the Y chromosome, i(Yp), is a rare marker chromosome. Its de novo presence prenatally represents a diagnostic dilemna since its impact on fetal development is difficult to predict. We present a case of 46,X,+i(Yp) de novo detected in an amniotic fluid specimen received for karyotype analysis. Fluorescence in situ hybridization (FISH) studies using a panel of Y-specific biotinylated DNA probes including a Y-centromere probe, a Y whole chromosome painting probe, and a lambda HAM2 probe containing 19 kb of AMG-Y sequence, located to Yp11.2, have identified the marker chromosome as i(Yp). Themore » breakpoint on this marker chromosome is tentatively assigned to Yq11.1 which is close to the centromere. The present report illustrates the importance of FISH techniques as a complement to cytogenetic methods for accurate identification of chromosome rearrangements in prenatal diagnosis and genetic counseling.« less

Interview with Dick Fish

DOE Office of Scientific and Technical Information (OSTI.GOV)

Not Available

An interview with Dick Fish of the Lawrence Berkeley Laboratory is presented. Mr. Fish's current research interests are discussed. These interests include the identification of trace metal non-porphyrin compounds in heavy crude petroleums. In particular, these interests include the identification of a class of nickel and vanadium compounds in the heavy crude petroleum from various geographical locations, e.g., the Boscan in Cerro Negro in Venezuela, Wilmington in California, and Prudhoe Bay in Alaska.

Biophysical Factors Affecting the Distribution of Demersal Fish around the Head of a Submarine Canyon Off the Bonney Coast, South Australia

PubMed Central

Currie, David R.; McClatchie, Sam; Middleton, John F.; Nayar, Sasi

2012-01-01

We sampled the demersal fish community of the Bonney Canyon, South Australia at depths (100–1,500 m) and locations that are poorly known. Seventy-eight species of demersal fish were obtained from 12 depth-stratified trawls along, and to either side, of the central canyon axis. Distributional patterns in species richness and biomass were highly correlated. Three fish assemblage groupings, characterised by small suites of species with narrow depth distributions, were identified on the shelf, upper slope and mid slope. The assemblage groupings were largely explained by depth (ρw = 0.78). Compared to the depth gradient, canyon-related effects are weak or occur at spatial or temporal scales not sampled in this study. A conceptual physical model displayed features consistent with the depth zonational patterns in fish, and also indicated that canyon upwelling can occur. The depth zonation of the fish assemblage was associated with the depth distribution of water masses in the area. Notably, the mid-slope community (1,000 m) coincided with a layer of Antarctic Intermediate Water, the upper slope community (500 m) resided within the core of the Flinders Current, and the shelf community was located in a well-mixed layer of surface water (<450 m depth). PMID:22253907

Persistence of forage fish ‘hot spots’ and its association with foraging Steller sea lions (Eumetopias jubatus) in southeast Alaska

NASA Astrophysics Data System (ADS)

Gende, Scott M.; Sigler, Michael F.

2006-02-01

Whereas primary and secondary productivity at oceanic 'hotspots' may be a function of upwelling and temperature fronts, the aggregation of higher-order vertebrates is a function of their ability to search for and locate these areas. Thus, understanding how predators aggregate at these productive foraging areas is germane to the study of oceanic hot spots. We examined the spatial distribution of forage fish in southeast Alaska for three years to better understand Steller sea lion ( Eumetopias jubatus) aggregations and foraging behavior. Energy densities (millions KJ/km 2) of forage fish were orders of magnitude greater during the winter months (November-February), due to the presence of schools of overwintering Pacific herring ( Clupea pallasi). Within the winter months, herring consistently aggregated at a few areas, and these areas persisted throughout the season and among years. Thus, our study area was characterized by seasonally variable, highly abundant but highly patchily distributed forage fish hot spots. More importantly, the persistence of these forage fish hot spots was an important characteristic in determining whether foraging sea lions utilized them. Over 40% of the variation in the distribution of sea lions on our surveys was explained by the persistence of forage fish hot spots. Using a simple spatial model, we demonstrate that when the density of these hot spots is low, effort necessary to locate these spots is minimized when those spots persist through time. In contrast, under similar prey densities but lower persistence, effort increases dramatically. Thus an important characteristic of pelagic hot spots is their persistence, allowing predators to predict their locations and concentrate search efforts accordingly.

Swimming behaviour and ascent paths of brook trout in a corrugated culvert

USGS Publications Warehouse

Goerig, Elsa; Bergeron, Normand E.; Castro-Santos, Theodore R.

2017-01-01

Culverts may restrict fish movements under some hydraulic conditions such as shallow flow depths or high velocities. Although swimming capacity imposes limits to passage performance, behaviour also plays an important role in the ability of fish to overcome velocity barriers. Corrugated metal culverts are characterized by unsteady flow and existence of low‐velocity zones, which can improve passage success. Here, we describe swimming behaviour and ascent paths of 148 wild brook trout in a 1.5‐m section of a corrugated metal culvert located in Raquette Stream, Québec, Canada. Five passage trials were conducted in mid‐August, corresponding to specific mean cross‐sectional flow velocities ranging from 0.30 to 0.63 m/s. Fish were individually introduced to the culvert and their movements recorded with a camera located above the water. Lateral and longitudinal positions were recorded at a rate of 3 Hz in order to identify ascent paths. These positions were related to the distribution of flow depths and velocities in the culvert. Brook trout selected flow velocities from 0.2 to 0.5 m/s during their ascents, which corresponded to the available flow velocities in the culvert at the low‐flow conditions. This however resulted in the use of low‐velocity zones at higher flows, mainly located along the walls of the culvert. Some fish also used the corrugations for sheltering, although the behaviour was marginal and did not occur at the highest flow condition. This study improves knowledge on fish behaviour during culvert ascents, which is an important aspect for developing reliable and accurate estimates of fish passage ability.

Discovery of a unique Ig heavy-chain (IgT) in rainbow trout: Implications for a distinctive B cell developmental pathway in teleost fish

USGS Publications Warehouse

Hansen, J.D.; Landis, E.D.; Phillips, R.B.

2005-01-01

During the analysis of Ig superfamily members within the available rainbow trout (Oncorhynchus mykiss) EST gene index, we identified a unique Ig heavy-chain (IgH) isotype. cDNAs encoding this isotype are composed of a typical IgH leader sequence and a VDJ rearranged segment followed by four Ig superfamily C-1 domains represented as either membrane-bound or secretory versions. Because teleost fish were previously thought to encode and express only two IgH isotypes (IgM and IgD) for their humoral immune repertoire, we isolated all three cDNA isotypes from a single homozygous trout (OSU-142) to confirm that all three are indeed independent isotypes. Bioinformatic and phylogenetic analysis indicates that this previously undescribed divergent isotype is restricted to bony fish, thus we have named this isotype "IgT" (??) for teleost fish. Genomic sequence analysis of an OSU-142 bacterial artificial chromosome (BAC) clone positive for all three IgH isotypes revealed that IgT utilizes the standard rainbow trout VH families, but surprisingly, the IgT isotype possesses its own exclusive set of DH and JH elements for the generation of diversity. The IgT D and J segments and ?? constant (C) region genes are located upstream of the D and J elements for IgM, representing a genomic IgH architecture that has not been observed in any other vertebrate class. All three isotypes are primarily expressed in the spleen and pronephros (bone marrow equivalent), and ontogenically, expression of IgT is present 4 d before hatching in developing embryos. ?? 2005 by The National Academy of Sciences of the USA.

Bioavailability of pollutants sets risk of exposure to biota and human population in reservoirs from Iguaçu River (Southern Brazil).

PubMed

Yamamoto, F Y; Pereira, M V M; Lottermann, E; Santos, G S; Stremel, T R O; Doria, H B; Gusso-Choueri, P; Campos, S X; Ortolani-Machado, C F; Cestari, M M; Neto, F Filipak; Azevedo, J C R; Ribeiro, C A Oliveira

2016-09-01

The Iguaçu River, located at the Southern part of Brazil, has a great socioeconomic and environmental importance due to its high endemic fish fauna and its potential to generate hydroelectric power. However, Iguaçu River suffers intense discharge of pollutants in the origin of the river. In a previous report, the local environmental agency described water quality to improve along the river course. However, no study with integrated evaluation of chemical analysis and biological responses has been reported so far for the Iguaçu River. In the current study, three different Brazilian fish species (Astyanax bifasciatus, Chrenicicla iguassuensis, and Geophagus brasiliensis) were captured in the five cascading reservoirs of Iguaçu River for a multi-biomarker study. Chemical analysis in water, sediment, and muscle indicated high levels of bioavailable metals in all reservoirs. Polycyclic aromatic hydrocarbons (PAHs) were detected in the bile of the three fish species. Integration of the data through a FA/PCA analysis demonstrated the poorest environmental quality of the reservoir farthest from river's source, which is the opposite of what has been reported by the environmental agency. The presence of hazardous chemicals in the five reservoirs of Iguaçu River, their bioaccumulation in the muscle of fish, and the biological responses showed the impacts of human activities to this area and did not confirm a gradient of pollution between the five reservoirs, from the source toward Iguaçu River's mouth. Therefore, diffuse source of pollutants present along the river course are increasing the risk of exposure to biota and human populations.

Stable carbon and oxygen isotope ratios of winter flounder otoliths assess connectivity between juvenile and adult habitats

NASA Astrophysics Data System (ADS)

Pruell, Richard; Taplin, Bryan

2017-04-01

Winter flounder populations (Pseudopleuronectes americanus) have significantly declined in recent years along the Rhode Island, USA coastline. The reasons for this decline are not completely clear; however, habitat loss may be a factor. Therefore, knowledge of connectivity between juvenile nearshore habitats and the adult offshore populations may be important for improved management of this fishery. This study was undertaken to determine if stable carbon (δ13C) and oxygen (δ18O) isotope ratios in otoliths could be used to differentiate the locations that serve as important juvenile habitats for winter flounder. It is generally believed that winter flounder spawn during late winter in nearshore areas, and juvenile fish reside in shallow-water habitats along the coastline during their first summer. Once young-of-the-year flounder undergo metamorphosis and settle, they remain in close proximity to that site until fall. Adult fish move offshore during the late winter and spring, and then return to their natal estuaries during the fall and winter to spawn. Juvenile flounder were collected yearly over a three-year period from 18 juvenile habitats with a wide range of salinities. Several years later adult flounder of the same cohorts were obtained from similar inshore locations and also from the offshore fishery. Sagital otoliths were removed from the adult flounder and the core of the otolith representing the juvenile period was obtained using a Micromill drilling system. These juvenile otolith cores from adult fish and whole sagittal otoliths from juvenile flounder were analyzed for δ13C and δ18O using continuous-flow isotope ratio mass spectrometry. Results from these analyses show significant differences in δ13C and δ18O signatures among water bodies (bay, coastal ponds and an estuarine river). Preliminary analysis indicates that the isotope ratios of the juvenile cores from adult flounder and whole otoliths from juvenile fish collected at the same locations were similar. Isotope data for juvenile cores from adult flounder obtained from the offshore fishery indicate that many of these flounder spent their first year in high salinity areas and not in estuarine systems.

Fish assemblages and environmental variables associated with hard-rock mining in the Coeur d'Alene River basin, Idaho

USGS Publications Warehouse

Maret, Terry R.; MacCoy, Dorene E.

2002-01-01

As part of the U.S. Geological Survey's National Water Quality Assessment Program, fish assemblages, environmental variables, and associated mine densities were evaluated at 18 test and reference sites during the summer of 2000 in the Coeur d'Alene and St. Regis river basins in Idaho and Montana. Multimetric and multivariate analyses were used to examine patterns in fish assemblages and the associated environmental variables representing a gradient of mining intensity. The concentrations of cadmium (Cd), lead (Pb), and zinc (Zn) in water and streambed sediment found at test sites in watersheds where production mine densities were at least 0.2 mines/km2 (in a 500-m stream buffer) were significantly higher than the concentrations found at reference sites. Many of these metal concentrations exceeded Ambient Water Quality Criteria (AWQC) and the Canadian Probable Effect Level guidelines for streambed sediment. Regression analysis identified significant relationships between the production mine densities and the sum of Cd, Pb, and Zn concentrations in water and streambed sediment (r2 = 0.69 and 0.66, respectively; P < 0.01). Zinc was identified as the primary metal contaminant in both water and streambed sediment. Eighteen fish species in the families Salmonidae, Cottidae, Cyprinidae, Catostomidae, Centrarchidae, and Ictaluridae were collected. Principal components analysis of 11 fish metrics identified two distinct groups of sites corresponding to the reference and test sites, predominantly on the basis of the inverse relationship between percent cottids and percent salmonids (r = -0.64; P < 0.05). Streams located downstream from the areas of intensive hard-rock mining in the Coeur d'Alene River basin contained fewer native fish and lower abundances as a result of metal enrichment, not physical habitat degradation. Typically, salmonids were the predominant species at test sites where Zn concentrations exceeded the acute AWQC. Cottids were absent at these sites, which suggests that they are more severely affected by elevated metals than are salmonids.

Levels of persistent contaminants in relation to fish consumption among older male anglers in Wisconsin.

PubMed

Christensen, Krista Y; Thompson, Brooke A; Werner, Mark; Malecki, Kristen; Imm, Pamela; Anderson, Henry A

2016-03-01

Fish are an important source of nutrients which may reduce risk of adverse health outcomes such as cardiovascular disease; however, fish may also contain significant amounts of environmental pollutants such as mercury, polychlorinated biphenyls (PCBs), polybrominated diphenyl ethers (PBDEs), and perfluorinated compounds (PFCs, also called perfluoroalkyl compounds), which confer increased risk for adverse health effects. The Wisconsin Departments of Health Services and Natural Resources developed a survey instrument, along with a strategy to collect human biological samples to assess the risks and benefits associated with long-term fish consumption among older male anglers in Wisconsin. The target population was men aged 50 years and older, who fish Wisconsin waters and live in the state of Wisconsin. Participants provided blood and hair samples and completed a detailed (paper) questionnaire, which included questions on basic demographics, health status, location of catch and species of fish caught/eaten, consumption of locally caught and commercially purchased fish, and awareness and source of information for local and statewide consumption guidelines. Biological samples were used to assess levels of PCBs, PBDEs, PFCs (blood), and mercury (hair and blood). Quantile regression analysis was used to investigate the associations between biomarker levels and self-reported consumption of fish from the Great Lakes and other areas of concern, other locally caught fish, and commercially purchased fish (meals per year). Respondents had a median age of 60.5 (interquartile range: 56, 67) years. The median fish consumption was 54.5 meals per year, with most fish meals coming from locally-caught fish. Participants had somewhat higher mercury levels compared with the US general population, while levels of other contaminants were similar or lower. Multivariate regression models showed that consumption of fish from the Great Lakes and areas of concern was associated with higher levels of each of the contaminants with the exception of PBDEs, as was consumption of locally caught fish from other water bodies. All commercial fish consumption was also associated with both hair and blood mercury. When looking at specific PCB, PBDE and PFC analytes, consumption of fish from the Great Lakes and areas of concern was associated with higher levels of each of the individual PCB congeners examined, as well as higher levels of all of the PFCs examined, with the exception of PFHxS. Among the PFCs, locally caught fish from other water bodies was also associated with higher levels of each of the congeners examined except PFHxS. Finally, all commercial fish was associated with higher levels of PFHxS. Published by Elsevier GmbH.

The Analysis of Phytoplankton Abundance Using Weibull Distribution (A Case Study in the Coastal Area of East Yapen in the Regency of Yapen Islands, Papua)

ERIC Educational Resources Information Center

Indrayani, Ervina; Dimara, Lisiard; Paiki, Kalvin; Reba, Felix

2018-01-01

The coastal waters of East Yapen is one of the spawning sites and areas of care for marine biota in Papua. Because of its very open location, it is widely used by human activities such as fishing, residential, industrial and cruise lines. This indirectly affects the balance of coastal waters condition of East Yapen that impact on the existence of…

EMMMA: A web-based system for environmental mercury mapping, modeling, and analysis

USGS Publications Warehouse

Hearn,, Paul P.; Wente, Stephen P.; Donato, David I.; Aguinaldo, John J.

2006-01-01

tissue, atmospheric emissions and deposition, stream sediments, soils, and coal) and mercuryrelated data (mine locations); 2) Interactively view and access predictions of the National Descriptive Model of Mercury in Fish (NDMMF) at 4,976 sites and 6,829 sampling events (events are unique combinations of site and sampling date) across the United States; and 3) Use interactive mapping and graphing capabilities to visualize spatial and temporal trends and study relationships between mercury and other variables.

Combined M-FISH and CGH analysis allows comprehensive description of genetic alterations in neuroblastoma cell lines.

PubMed

Van Roy, N; Van Limbergen, H; Vandesompele, J; Van Gele, M; Poppe, B; Salwen, H; Laureys, G; Manoel, N; De Paepe, A; Speleman, F

2001-10-01

Cancer cell lines are essential gene discovery tools and have often served as models in genetic and functional studies of particular tumor types. One of the future challenges is comparison and interpretation of gene expression data with the available knowledge on the genomic abnormalities in these cell lines. In this context, accurate description of these genomic abnormalities is required. Here, we show that a combination of M-FISH with banding analysis, standard FISH, and CGH allowed a detailed description of the genetic alterations in 16 neuroblastoma cell lines. In total, 14 cryptic chromosome rearrangements were detected, including a balanced t(2;4)(p24.3;q34.3) translocation in cell line NBL-S, with the 2p24 breakpoint located at about 40 kb from MYCN. The chromosomal origin of 22 marker chromosomes and 41 cytogenetically undefined translocated segments was determined. Chromosome arm 2 short arm translocations were observed in six cell lines (38%) with and five (31%) without MYCN amplification, leading to partial chromosome arm 2p gain in all but one cell line and loss of material in the various partner chromosomes, including 1p and 11q. These 2p gains were often masked in the GGH profiles due to MYCN amplification. The commonly overrepresented region was chromosome segment 2pter-2p22, which contains the MYCN gene, and five out of eleven 2p breakpoints clustered to the interface of chromosome bands 2p16 and 2p21. In neuroblastoma cell line SJNB-12, with double minutes (dmins) but no MYCN amplification, the dmins were shown to be derived from 16q22-q23 sequences. The ATBF1 gene, an AT-binding transcription factor involved in normal neurogenesis and located at 16q22.2, was shown to be present in the amplicon. This is the first report describing the possible implication of ATBF1 in neuroblastoma cells. We conclude that a combined approach of M-FISH, cytogenetics, and CGH allowed a more complete and accurate description of the genetic alterations occurring in the investigated cell lines. Copyright 2001 Wiley-Liss, Inc.

Environmental contaminants and biomarker responses in fish from the Columbia River and its tributaries: spatial and temporal trends.

PubMed

Hinck, Jo Ellen; Schmitt, Christopher J; Blazer, Vicki S; Denslow, Nancy D; Bartish, Timothy M; Anderson, Patrick J; Coyle, James J; Dethloff, Gail M; Tillitt, Donald E

2006-08-01

Fish were collected from 16 sites on rivers in the Columbia River Basin (CRB) from September 1997 to April 1998 to document temporal and spatial trends in the concentrations of accumulative contaminants and to assess contaminant effects on the fish. Sites were located on the mainstem of the Columbia River and on the Snake, Willamette, Yakima, Salmon, and Flathead Rivers. Common carp (Cyprinus carpio), black bass (Micropterus sp.), and largescale sucker (Catostomus macrocheilus) were the targeted species. Fish were field-examined for external and internal lesions, selected organs were weighed to compute somatic indices, and tissue and fluid samples were preserved for fish health and reproductive biomarker analyses. Composite samples of whole fish, grouped by species and gender, from each site were analyzed for organochlorine and elemental contaminants using instrumental methods and for 2,3,7,8-tetrachloro dibenzo-p-dioxin-like activity (TCDD-EQ) using the H4IIE rat hepatoma cell bioassay. Overall, pesticide concentrations were greatest in fish from lower CRB sites and elemental concentrations were greatest in fish from upper CRB sites. These patterns reflected land uses. Lead (Pb) concentrations in fish from the Columbia River at Northport and Grand Coulee, Washington (WA) exceeded fish and wildlife toxicity thresholds (>0.4 microg/g). Selenium (Se) concentrations in fish from the Salmon River at Riggins, Idaho (ID), the Columbia River at Vernita Bridge, WA, and the Yakima River at Granger, WA exceeded toxicity thresholds for piscivorous wildlife (>0.6 microg/g). Mercury (Hg) concentrations in fish were elevated throughout the basin but were greatest (>0.4 microg/g) in predatory fish from the Salmon River at Riggins, ID, the Yakima River at Granger, WA, and the Columbia River at Warrendale, Oregon (OR). Residues of p,p'-DDE were greatest (>0.8 microg/g) in fish from agricultural areas of the Snake, Yakima, and Columbia River basins but were not detected in upper CRB fish. Other organochlorine pesticides did not exceed toxicity thresholds in fish or were detected infrequently. Total polychlorinated biphenyls (PCBs; >0.11 microg/g) and TCDD-EQs (>5 pg/g) exceeded wildlife guidelines in fish from the middle and lower CRB, and ethoxyresorufin O-deethylase (EROD) activity was also elevated at many of the same sites. Temporal trend analysis indicated decreasing or stable concentrations of Pb, Se, Hg, p,p'-DDE, and PCBs at most sites where historical data were available. Altered biomarkers were noted in fish throughout the CRB. Fish from some stations had responded to chronic contaminant exposure as indicated by fish health and reproductive biomarker results. Although most fish from some sites had grossly visible external or internal lesions, histopathological analysis determined these to be inflammatory responses associated with helminth or myxosporidian parasites. Many largescale sucker from the Columbia River at Northport and Grand Coulee, WA had external lesions and enlarged spleens, which were likely associated with infections. Intersex male smallmouth bass (Micropterus dolomieu) were found in the Snake River at Lewiston, ID and the Columbia River at Warrendale, OR. Male bass, carp, and largescale sucker containing low concentrations of vitellogenin were common in the CRB, and comparatively high concentrations (>0.3 mg/mL) were measured in male fish from the Flathead River at Creston, Montana, the Snake River at Ice Harbor Dam, WA, and the Columbia River at Vernita Bridge, WA and Warrendale, OR. Results from our study and other investigations indicate that continued monitoring in the CRB is warranted to identify consistently degraded sites and those with emerging problems.

Increasing fish taxonomic and functional richness affects ecosystem properties of small headwater prairie streams

DOE Office of Scientific and Technical Information (OSTI.GOV)

Martin, Erika C.; Gido, Keith B.; Bello, Nora

Stream fish can regulate their environment through direct and indirect pathways, and the relative influence of communities with different taxonomic and functional richness on ecosystem properties likely depends on habitat structure. Given this complexity, it is not surprising that observational studies of how stream fish communities influence ecosystems have shown mixed results. In this study, we evaluated the effect of an observed gradient of taxonomic (zero, one, two or three species) and functional (zero, one or two groups) richness of fishes on several key ecosystem properties in experimental stream mesocosms. Our study simulated small (less than two metres wide) headwatermore » prairie streams with a succession of three pool-riffle structures (upstream, middle and downstream) per mesocosm. Additionally, ecosystem responses included chlorophyll a from floating algal mats and benthic algae, benthic organic matter, macroinvertebrates (all as mass per unit area), algal filament length and stream metabolism (photosynthesis and respiration rate). Ecosystem responses were analysed individually using general linear mixed models. Significant treatment (taxonomic and functional richness) by habitat (pools and riffles) interactions were found for all but one ecosystem response variable. After accounting for location (upstream, middle and downstream) effects, the presence of one or two grazers resulted in shorter mean algal filament lengths in pools compared to no-fish controls. These observations suggest grazers can maintain short algal filaments in pools, which may inhibit long filaments from reaching the surface. Accordingly, floating algal mats decreased in mid- and downstream locations in grazer treatment relative to no-fish controls. At the scale of the entire reach, gross primary productivity and respiration were greater in treatments with two grazer species compared to mixed grazer/insectivore or control treatments. Lastly, the distribution of stream resources across habitat types and locations within a reach can therefore be influenced by the taxonomic and functional composition of fishes in small prairie streams. Thus, disturbances that alter diversity of these systems might have unexpected ecosystem-level consequences.« less

Increasing fish taxonomic and functional richness affects ecosystem properties of small headwater prairie streams

DOE PAGES

Martin, Erika C.; Gido, Keith B.; Bello, Nora; ...

2016-04-06

Stream fish can regulate their environment through direct and indirect pathways, and the relative influence of communities with different taxonomic and functional richness on ecosystem properties likely depends on habitat structure. Given this complexity, it is not surprising that observational studies of how stream fish communities influence ecosystems have shown mixed results. In this study, we evaluated the effect of an observed gradient of taxonomic (zero, one, two or three species) and functional (zero, one or two groups) richness of fishes on several key ecosystem properties in experimental stream mesocosms. Our study simulated small (less than two metres wide) headwatermore » prairie streams with a succession of three pool-riffle structures (upstream, middle and downstream) per mesocosm. Additionally, ecosystem responses included chlorophyll a from floating algal mats and benthic algae, benthic organic matter, macroinvertebrates (all as mass per unit area), algal filament length and stream metabolism (photosynthesis and respiration rate). Ecosystem responses were analysed individually using general linear mixed models. Significant treatment (taxonomic and functional richness) by habitat (pools and riffles) interactions were found for all but one ecosystem response variable. After accounting for location (upstream, middle and downstream) effects, the presence of one or two grazers resulted in shorter mean algal filament lengths in pools compared to no-fish controls. These observations suggest grazers can maintain short algal filaments in pools, which may inhibit long filaments from reaching the surface. Accordingly, floating algal mats decreased in mid- and downstream locations in grazer treatment relative to no-fish controls. At the scale of the entire reach, gross primary productivity and respiration were greater in treatments with two grazer species compared to mixed grazer/insectivore or control treatments. Lastly, the distribution of stream resources across habitat types and locations within a reach can therefore be influenced by the taxonomic and functional composition of fishes in small prairie streams. Thus, disturbances that alter diversity of these systems might have unexpected ecosystem-level consequences.« less

Haematozoans from deep water fishes trawled off the Cape Verde Islands and over the Porcupine Seabight, with a revision of species within the genus Desseria (Adeleorina: Haemogregarinidae).

PubMed

Davies, Angela J; Hosein, Shazia; Merrett, Nigel R

2012-02-01

Archived blood smears from 32 of 113 fishes in 18 families and 12 orders, trawled from deep North Atlantic waters off the Cape Verde Islands in 1999 and over the Porcupine Seabight in 2001 were found to harbour haematozoans. These included four species of haemogregarines (Adeleorina, Haemogregarinidae) and a species of trypanosome (Trypanosomatina, Trypanosomatidae) located in Porcupine Seabight fishes. Also present were Haemohormidium-like structures of uncertain status found in samples from this location and from the Cape Verde Islands. Although material was limited, two of the haemogregarines were provisionally named Desseria harriottae sp. n. from Harriotta raleighana Goode et Bean (Chimaeriformes, Rhinochimaeridae), and Haemogregarina bathysauri sp. n. from Bathysaurus ferox Günther (Aulopiformes, Bathysauridae). The two remaining haemogregarines were identified as Desseria marshalllairdi (Khan, Threlfall et Whitty, 1992) from Halosauropsis macrochir (Günther) (Notacanthiformes, Halosauridae), and Haemogregarina michaeljohnstoni (Davies et Merrett, 2000) from Cataetyx laticeps Koefoed (Ophidiformes, Bythitidae). The name H. michaeljohnstoni was proposed to replace Haemogregarinajohnstoni Davies et Merrett, 2000 from C. laticeps and to avoid confusion with Hepatozoon johnstoni (Mackerras, 1961) Smith, 1996 from varanid lizards, originally named Haemogregarina johnstoni Mackerras, 1961. The trypanosome formed a mixed parasitaemia with D. harriottae in H. raleighana and was provisionally named Trypanosoma harriottae sp. n. No blood parasites had been described previously from cartilaginous fishes of the Holocephali, making the finds in H. raleighana unique. Haemohormidium-like structures were located in erythrocytes in one fish, Coryphaenoides armatus (Hector), among the Cape Verde Islands samples and in 12 species of fishes from the Porcupine Seabight; all these hosts were bony fishes. Finally, the haemogregarine species listed in the genus Desseria Siddall, 1995 were reassessed. Of the original list of 41 species, 30 were retained and 5 species added, including D. harriottae, so that the genus now contains 35 species.

50 CFR 600.335 - National Standard 6-Variations and Contingencies.

Code of Federal Regulations, 2014 CFR

2014-10-01

... management terms, variations arise from biological, social, and economic occurrences, as well as from fishing... strength, stock location in time and space, environmental/habitat changes, and ecological interactions... uncertainties. Social changes could involve increases or decreases in recreational fishing, or the movement of...

50 CFR 600.335 - National Standard 6-Variations and Contingencies.

Code of Federal Regulations, 2012 CFR

2012-10-01

... management terms, variations arise from biological, social, and economic occurrences, as well as from fishing... strength, stock location in time and space, environmental/habitat changes, and ecological interactions... uncertainties. Social changes could involve increases or decreases in recreational fishing, or the movement of...

50 CFR 600.335 - National Standard 6-Variations and Contingencies.

Code of Federal Regulations, 2013 CFR

2013-10-01

... management terms, variations arise from biological, social, and economic occurrences, as well as from fishing... strength, stock location in time and space, environmental/habitat changes, and ecological interactions... uncertainties. Social changes could involve increases or decreases in recreational fishing, or the movement of...

Fish community comparisons along environmental gradients in lakes of France and north-east USA

EPA Science Inventory

To assess whether eight traits of fish communities (species richness, three reproductive traits and four trophic traits) respond similarly to environmental gradients, and consequently display convergence between the lakes of France and north-east USA (NEUSA). Location 75 Frenc...

50 CFR 600.335 - National Standard 6-Variations and Contingencies.

Code of Federal Regulations, 2010 CFR

2010-10-01

... management terms, variations arise from biological, social, and economic occurrences, as well as from fishing... strength, stock location in time and space, environmental/habitat changes, and ecological interactions... uncertainties. Social changes could involve increases or decreases in recreational fishing, or the movement of...

Dissolved pesticide concentrations detected in storm-water runoff at selected sites in the San Joaquin River basin, California, 2000-2001

USGS Publications Warehouse

Orlando, James L.; Kuivila, Kathryn; Whitehead, Andrew

2003-01-01

As part of a collaborative study involving the United States Geological Survey Toxics Substances Hydrology Project (Toxics Project) and the University of California, Davis, Bodega Marine Laboratory (BML), water samples were collected at three sites within the San Joaquin River Basin of California and analyzed for dissolved pesticides. Samples were collected during, and immediately after, the first significant rainfall (greater than 0.5 inch per day) following the local application of dormant spray, organophosphate insecticides during the winters of 2000 and 2001. All samples were collected in conjunction with fish-caging experiments conducted by BML researchers. Sites included two locations potentially affected by runoff of agricultural chemicals (San Joaquin River near Vernalis, California, and Orestimba Creek at River Road near Crows Landing, California, and one control site located upstream of pesticide input (Orestimba Creek at Orestimba Creek Road near Newman, California). During these experiments, fish were placed in cages and exposed to storm runoff for up to ten days. Following exposure, the fish were examined for acetylcholinesterase concentrations and overall genetic damage. Water samples were collected throughout the rising limb of the stream hydrograph at each site for later pesticide analysis. Concentrations of selected pesticides were measured in filtered water samples using solid-phase extraction (SPE) and gas chromatography-mass spectrometry (GC/MS) at the U.S. Geological Survey organic chemistry laboratory in Sacramento, California. Results of these analyses are presented.

Socioeconomic issues for the Bear River Watershed Conservation Land Area Protection Plan

USGS Publications Warehouse

Thomas, Catherine Cullinane; Huber, Christopher; Gascoigne, William; Koontz, Lynne

2012-01-01

The Bear River Watershed Conservation Area is located in the Bear River Watershed, a vast basin covering fourteen counties across three states. Located in Wyoming, Utah, and Idaho, the watershed spans roughly 7,500 squares miles: 1,500 squares miles in Wyoming; 2,700 squares miles in Idaho; and 3,300 squares miles in Utah (Utah Division of Water Resources, 2004). Three National Wildlife Refuges are currently contained within the boundary of the BRWCA: the Bear River Migratory Bird Refuge in Utah, the Bear Lake National Wildlife Refuge in Idaho, and the Cokeville Meadows National Wildlife Refuge in Wyoming. In 2010, the U.S. Fish and Wildlife Service conducted a Preliminary Project Proposal and identified the Bear River Watershed Conservation Area as having high-value wildlife habitat. This finding initiated the Land Protection Planning process, which is used by the U.S. Fish and Wildlife Service to study land conservation opportunities including adding lands to the National Wildlife Refuge System. The U.S. Fish and Wildlife Service proposes to include part of the Bear River Watershed Conservation Area in the Refuge System by acquiring up to 920,000 acres of conservation easements from willing landowners to maintain landscape integrity and habitat connectivity in the region. The analysis described in this report provides a profile of the social and economic conditions in the Bear River Watershed Conservation Area and addresses social and economic questions and concerns raised during public involvement in the Land Protection Planning process.

Contaminant concentrations in sport fish from San Francisco Bay, 1997.

PubMed

Davis, Jay A; May, Michael D; Greenfield, Ben K; Fairey, Russell; Roberts, Cassandra; Ichikawa, Gary; Stoelting, Matt S; Becker, Jonathan S; Tjeerdema, Ronald S

2002-10-01

In 1997, seven sport fish species were sampled from seven popular fishing areas in San Francisco Bay. Mercury exceeded a human health screening value in 44 of 84 (52%) samples. All collected samples of leopard shark and striped bass exceeded the mercury screening value of 0.23 microg/g wet weight. PCBs exceeded the screening value in 51 of 72 (71%) samples. DDT, chlordane, and dieldrin, had lower numbers of samples above screening values: 16 of 72 (22%) for DDT, 11 of 72 (15%) for chlordanes, and 27 of 72 (37%) for dieldrin. Concentrations of PCBs and other trace organics were highest in white croaker and shiner surfperch, the two species with the highest fat content in their muscle tissue. Fish from one location, Oakland Harbor, had significantly elevated wet weight concentrations of mercury, PCBs, DDTs, and chlordanes compared to other locations. Removal of skin from white croaker fillets reduced lipid concentrations by 27-49% and concentrations of trace organics by 33-40%.

Modelled drift patterns of fish larvae link coastal morphology to seabird colony distribution

PubMed Central

Sandvik, Hanno; Barrett, Robert T.; Erikstad, Kjell Einar; Myksvoll, Mari S.; Vikebø, Frode; Yoccoz, Nigel G.; Anker-Nilssen, Tycho; Lorentsen, Svein-Håkon; Reiertsen, Tone K.; Skarðhamar, Jofrid; Skern-Mauritzen, Mette; Systad, Geir Helge

2016-01-01

Colonial breeding is an evolutionary puzzle, as the benefits of breeding in high densities are still not fully explained. Although the dynamics of existing colonies are increasingly understood, few studies have addressed the initial formation of colonies, and empirical tests are rare. Using a high-resolution larval drift model, we here document that the distribution of seabird colonies along the Norwegian coast can be explained by variations in the availability and predictability of fish larvae. The modelled variability in concentration of fish larvae is, in turn, predicted by the topography of the continental shelf and coastline. The advection of fish larvae along the coast translates small-scale topographic characteristics into a macroecological pattern, viz. the spatial distribution of top-predator breeding sites. Our findings provide empirical corroboration of the hypothesis that seabird colonies are founded in locations that minimize travel distances between breeding and foraging locations, thereby enabling optimal foraging by central-place foragers. PMID:27173005

Evaluation of strobe lights to reduce turbine entrainment of juvenile steelhead (Oncorhynchus mykiss) at Cowlitz Falls Dam, Washington

USGS Publications Warehouse

Kock, Tobias J.; Evans, Scott D.; Liedtke, Theresa L.; Rondorf, Dennis W.; Kohn, Mike

2009-01-01

We conducted a radiotelemetry evaluation to determine if strobe lights could be used to decrease turbine entrainment of juvenile steelhead (Oncorhynchus mykiss) at Cowlitz Falls Dam, Washington. We found that radio-tagged juvenile steelhead approached and entered two spillbays (one lighted, one unlighted) in equal proportions. However, the presence of strobe lights was associated with decreased spillbay residence time of juvenile steelhead and increased passage through induction slots (secondary turbine intakes located upstream of the ogee on the spillway). Mean residence time of tagged fish inside the lighted spillbay was 14 min compared to 62 min inside the unlighted spillbay. Radio-tagged steelhead passed through induction slots at a higher proportion in the lighted spillbay (55%) than in the unlighted spillbay (26%). Recent studies have suggested that strobe lights can induce torpor in juvenile salmonids. We believe that strobe light exposure affected fish in our study at a location where they were susceptible to high flows thereby reducing mean residence time and increasing the proportion of tagged fish entering induction slots in the lighted spillbay. Our results suggest that factors such as deployment location, exposure, and flow are important variables that should be considered when evaluating strobe lights as a potential fish-deterring management tool.

Influence of fishing activity over the marine debris composition close to coastal jetty.

PubMed

Farias, Eduardo G G; Preichardt, Paulo R; Dantas, David V

2018-04-23

Worldwide, the marine debris emissions have been provoking impacts in ecosystems, generating massive mortality of different species with commercial interest. In South America, we have a lack of studies to verify the marine debris composition in transitional environments such as adjacent regions of coastal jetties. These are hydraulic engineering constructions used to maintain the navigation channel access between the sea-estuarine interface and are also used by teleost fishes, crustaceans, and mollusks like artificial shelters (reefs), being excellent fishing grounds. Therefore, the present study was devoted to qualitatively evaluate the composition of marine debris in an internal jetty portion of a Laguna Estuarine System (LES) located in South America (Brazil). Six hundred freediving were conducted to collect marine debris in the study region. The in situ campaigns were performed in 2016 during all spring season (sand substrata) in four distinct zones with 26,400 m 2 each one covering almost all adjacent jetty extension, to evaluate possible spatial changes in the marine debris composition. All material obtained was identified, measured, weighed, and ordered in eight groups, with six groups being related to the fishing activity and two groups related to the tourism/community in the study region. So, it was possible to observe possible relations between the marine debris distribution to artisanal and recreational local fishing. After 600 freediving sampling efforts, 2142 marine debris items were obtained, totaling close to 100 kg of solid waste removed from the inner portion of the coastal jetty. Notably, 1752 units (50 kg) of fishing leads were collected being this item the main marine debris residue found in the four sampled areas, corresponding to nearly 50% of the total weight of the collected waste. Ninety-eight percent of marine debris were derived from the local fishing activities, and just 2% were derived from tourism/community. Considering the total contribution related to fishing, 83% of the marine debris were composed by lead (sinkers) adopted by recreational and artisanal fishing. Notably, the catch activity in this region has a close influence over the marine debris composition. Reductions of marine debris emissions derived from the fishing activities have been a global challenge, once this problem is occurring in practically all marine and estuarine environments under the anthropic action. The presence of marine debris changes the local landscape and can provoke serious environmental problems, such as ghost fishing that affects a wide variability of marine mammals, birds, and fishes. Most of marine debris collected came from recreational and artisanal fishing, being the fishing leads the most prominent material, especially in sector 4. This fact is possibly related to the intense mullet fishing using cast nets, usual in this sample area. In the other sectors, there was a great predominance of grapnel fishing leads, widely adopted by recreational fishermen in open water environments. The "fingernails" present in these fishing leads ensure the sinking of the line for a specific location independently of possible flow oscillations of the tidal current and/or currents generated by winds. The massive quantity of fishing leads into the sectors is a dangerous fact. Notably, lead is a heavy, non-biodegradable, and extremely toxic metal that, due to the anthropogenic activities, has been increasing around the world. Future efforts in our study region should evaluate the seasonal marine debris composition to observe possible changes along the different seasons of the year. In this way, it would be possible to infer quantitatively the emission of marine debris derived from the fishing activity, assessing its impacts and enabling the adoption of environmental management strategies. This effort adopted a qualitative analysis, serving to show the current situation of this region that we now know to be vulnerable to the presence of marine debris derived from the fishing activity.

Salmonid Gamete Preservation in the Snake River Basin : 2000 Annual Report.

DOE Office of Scientific and Technical Information (OSTI.GOV)

Armstrong, Robyn; Kucera, Paul A.

2001-06-01

Steelhead (Oncorhynchus mykiss) and chinook salmon (Oncorhynchus tshawytscha) populations in the Northwest are decreasing. Genetic diversity is being lost at an alarming rate. The Nez Perce Tribe (Tribe) strives to ensure availability of genetic samples of the existing male salmonid population by establishing and maintaining a germplasm repository. The sampling strategy, initiated in 1992, has been to collect and preserve male salmon and steelhead genetic diversity across the geographic landscape by sampling within the major river subbasins in the Snake River basin, assuming a metapopulation structure existed historically. Gamete cryopreservation conserves genetic diversity in a germplasm repository, but is notmore » a recovery action for listed fish species. The Tribe was funded in 2000 by the Bonneville Power Administration (BPA) and the U.S. Fish and Wildlife Service Lower Snake River Compensation Plan (LSRCP) to coordinate gene banking of male gametes from Endangered Species Act listed steelhead and spring and summer chinook salmon in the Snake River basin. In 2000, a total of 349 viable chinook salmon semen samples from the Lostine River, Catherine Creek, upper Grande Ronde River, Lookingglass Hatchery (Imnaha River stock), Rapid River Hatchery, Lake Creek, the South Fork Salmon River weir, Johnson Creek, Big Creek, Capehorn Creek, Marsh Creek, Pahsimeroi Hatchery, and Sawtooth Hatchery (upper Salmon River stock) were cryopreserved. Also, 283 samples of male steelhead gametes from Dworshak Hatchery, Fish Creek, Grande Ronde River, Imnaha River, Little Sheep Creek, Pahsimeroi Hatchery and Oxbow Hatchery were also cryopreserved. The Tribe acquired 5 frozen steelhead samples from the Selway River collected in 1994 and 15 from Fish Creek sampled in 1993 from the U.S. Geological Survey, for addition into the germplasm repository. Also, 590 cryopreserved samples from the Grande Ronde chinook salmon captive broodstock program are being stored at the University of Idaho as a long-term archive, half of the total samples. A total of 2,420 cryopreserved samples from Snake River basin steelhead and spring and summer chinook salmon, from 1992 through 2000, are stored in two independent locations at the University of Idaho and Washington State University. Two large freezer tanks are located at each university, each of which holds approximately 25% of the cryopreserved sperm. One tank at each university is considered long-term archival storage, while the other is short-term. Fertility trials were conducted at each university to test the viability of the cryopreserved chinook salmon sperm. The experiments on the 2000 frozen and thawed sperm at both universities found a fertility rate of 60-70%. This document also summarizes 1999-2000 steelhead genetic analysis report. The results of mitochondrial, nuclear DNA and microsatellite analysis found differences and shared haplotypes between the stocks of fish sampled for cryopreservation. Recommendations for future gene banking efforts include the need for establishment of a regional genome resource bank, a greater emphasis on cryopreserving wild fish, continued fertility trials, exploring field cryopreservation and genetic analysis on all fish represented in the germplasm repository.« less

Evaluating analytical approaches for estimating pelagic fish biomass using simulated fish communities

USGS Publications Warehouse

Yule, Daniel L.; Adams, Jean V.; Warner, David M.; Hrabik, Thomas R.; Kocovsky, Patrick M.; Weidel, Brian C.; Rudstam, Lars G.; Sullivan, Patrick J.

2013-01-01

Pelagic fish assessments often combine large amounts of acoustic-based fish density data and limited midwater trawl information to estimate species-specific biomass density. We compared the accuracy of five apportionment methods for estimating pelagic fish biomass density using simulated communities with known fish numbers that mimic Lakes Superior, Michigan, and Ontario, representing a range of fish community complexities. Across all apportionment methods, the error in the estimated biomass generally declined with increasing effort, but methods that accounted for community composition changes with water column depth performed best. Correlations between trawl catch and the true species composition were highest when more fish were caught, highlighting the benefits of targeted trawling in locations of high fish density. Pelagic fish surveys should incorporate geographic and water column depth stratification in the survey design, use apportionment methods that account for species-specific depth differences, target midwater trawling effort in areas of high fish density, and include at least 15 midwater trawls. With relatively basic biological information, simulations of fish communities and sampling programs can optimize effort allocation and reduce error in biomass estimates.

Mercury in Fish of the American and Bear River Watershed Reservoirs: Tissue Analysis and Strategies for Minimizing Exposure at Lake Clementine and Rollins Reservoir, California

NASA Astrophysics Data System (ADS)

Keeble-Toll, A. K.; Monohan, C.; Brown, D. L.; Pearson, G.

2016-12-01

The primary pathway of human exposure to mercury is the consumption of contaminated fish. Identification of patterns of fish tissue mercury levels are a key mechanism for understanding risk drivers and human exposure potential. Site-specific fish tissue data aid the Office of Environmental Health Hazard Assessment (OEHHA) in the development of consumption advisories. This research consists of Year 1 of a three year project to collect fish data from six reservoirs downstream of historic hydraulic mines in the Cosumnes, American, Bear, Yuba watershed region. Angler survey data informed sampling to ensure that commonly caught and consumed species were harvested from Lake Clementine and Rollins Reservoir and was used to evaluate posted fish consumption advice as a mechanism for protecting human health. A total of 72 samples from four species groups were collected in 2015. Geometric mean THg (ppm, wet weight) were highest for black bass at both Lake Clementine (n = 8, THg = 0.40) and Rollins Reservoir (n = 26, THg = 0.54), with a significant positive relationship between fish total length and THg at both water bodies (Lake Clementine: rho = 0.85, p<0.05; Rollins Reservoir: rho = 0.85, p<0.01). Sunfish data for both reservoirs were lower in THg than black bass (Rollins Reservoir: n = 24, THg= 0.16; Lake Clementine: n = 29; THg = 0.12), with a significant positive relationship between fish total length and THg at Lake Clementine (rho = 0.83, p<0.01) but not Rollins Reservoir. These data allow OEHHA to develop site-specific fish consumption advice at both locations and can be used as baseline data to determine if future actions to address inorganic mercury (Hg) sources at legacy gold mines results in reduced human exposure risk at downstream water bodies.

Predicting invasiveness of species in trade: Climate match, trophic guild and fecundity influence establishment and impact of non-native freshwater fishes

USGS Publications Warehouse

Howeth, Jennifer G.; Gantz, Crysta A.; Angermeier, Paul; Frimpong, Emmanuel A.; Hoff, Michael H.; Keller, Reuben P.; Mandrak, Nicholas E.; Marchetti, Michael P.; Olden, Julian D.; Romagosa, Christina M.; Lodge, David M.

2016-01-01

AimImpacts of non-native species have motivated development of risk assessment tools for identifying introduced species likely to become invasive. Here, we develop trait-based models for the establishment and impact stages of freshwater fish invasion, and use them to screen non-native species common in international trade. We also determine which species in the aquarium, biological supply, live bait, live food and water garden trades are likely to become invasive. Results are compared to historical patterns of non-native fish establishment to assess the relative importance over time of pathways in causing invasions.LocationLaurentian Great Lakes region.MethodsTrait-based classification trees for the establishment and impact stages of invasion were developed from data on freshwater fish species that established or failed to establish in the Great Lakes. Fishes in trade were determined from import data from Canadian and United States regulatory agencies, assigned to specific trades and screened through the developed models.ResultsClimate match between a species’ native range and the Great Lakes region predicted establishment success with 75–81% accuracy. Trophic guild and fecundity predicted potential harmful impacts of established non-native fishes with 75–83% accuracy. Screening outcomes suggest the water garden trade poses the greatest risk of introducing new invasive species, followed by the live food and aquarium trades. Analysis of historical patterns of introduction pathways demonstrates the increasing importance of these trades relative to other pathways. Comparisons among trades reveal that model predictions parallel historical patterns; all fishes previously introduced from the water garden trade have established. The live bait, biological supply, aquarium and live food trades have also contributed established non-native fishes.Main conclusionsOur models predict invasion risk of potential fish invaders to the Great Lakes region and could help managers prioritize efforts among species and pathways to minimize such risk. Similar approaches could be applied to other taxonomic groups and geographic regions.

Isolation, pathogenicity and characterization of a novel bacterial pathogen Streptococcus uberis from diseased mandarin fish Siniperca chuatsi.

PubMed

Luo, Xia; Fu, Xiaozhe; Liao, Guoli; Chang, Ouqin; Huang, Zhibin; Li, Ningqiu

2017-06-01

In recent years, mandarin fish had a high mortality rate associated with abnormal swimming, exophthalmia, corneal opacity and eye hemorrhage on a fish farm located at Foshan city, Guangdong province, China. Three isolates of Gram-positive, chain-forming cocci were recovered from moribund fish, and designated as SS131025-1, SS131025-2, and SS131025-3. These isolates were identified as Streptococcus uberis according to their morphologic and physio-biochemical characteristics as well as phylogenetic analysis based on their 16S rRNA and GapC gene sequences. The pathogenicity of S. uberis to mandarin fish was determined by challenge experiments. Results of artificial challenge showed S. uberis infected healthy mandarin fish and lead to death by eyeball injection or immersion route, and the LD 50 of SS131025-1 with eyeball injection was 2.0 × 10 6.42  CFU per fish. Moreover extracellular product (ECP) of the isolated S.uberis induced CPB cell apoptosis and cause death of mandarin fish. In addition, these S. uberis strains could also infect tilapia, but not grass carp and crucian carp, and grew in brain-heart infusion broth with an optimal temperature of 37 °C, pH of 7.0, and salinity of 0%. Antibiotic sensitivity testing indicated that these isolates were susceptible to rifampicin and furazolidone but resistant to 20 kinds of antibiotics. Histopathologically, infection with S. uberis could cause serious pathological changes in brain tissues such as vacuoles in matrix, swollen mitochondria with lysis of cristae and disintegration, and lots of coccus was observed both under electron and light microscope. These results shed some light on the pathogenicity of the isolates and how to prevent and control S. uberis infection in mandarin fish. Copyright © 2017 Elsevier Ltd. All rights reserved.

Selective feeding by coral reef fishes on coral lesions associated with brown band and black band disease

NASA Astrophysics Data System (ADS)

Chong-Seng, K. M.; Cole, A. J.; Pratchett, M. S.; Willis, B. L.

2011-06-01

Recent studies have suggested that corallivorous fishes may be vectors for coral disease, but the extent to which fishes actually feed on and thereby potentially transmit coral pathogens is largely unknown. For this study, in situ video observations were used to assess the level to which fishes fed on diseased coral tissues at Lizard Island, northern Great Barrier Reef. Surveys conducted at multiple locations around Lizard Island revealed that coral disease prevalence, especially of brown band disease (BrB), was higher in lagoon and backreef locations than in exposed reef crests. Accordingly, video cameras were deployed in lagoon and backreef habitats to record feeding by fishes during 1-h periods on diseased sections of each of 44 different coral colonies. Twenty-five species from five fish families (Blennidae, Chaetodontidae, Gobiidae, Labridae and Pomacentridae) were observed to feed on infected coral tissues of staghorn species of Acropora that were naturally infected with black band disease (BBD) or brown band disease (BrB). Collectively, these fishes took an average of 18.6 (±5.6 SE) and 14.3 (±6.1 SE) bites per hour from BBD and BrB lesions, respectively. More than 40% (408/948 bites) and nearly 25% (314/1319 bites) of bites were observed on lesions associated with BBD and BrB, respectively, despite these bands each representing only about 1% of the substratum available. Moreover, many corallivorous fishes ( Labrichthys unilineatus, Chaetodon aureofasciatus, C. baronessa, C. lunulatus, C. trifascialis, Cheiloprion labiatus) selectively targeted disease lesions over adjacent healthy coral tissues. These findings highlight the important role that reef fishes may play in the dynamics of coral diseases, either as vectors for the spread of coral disease or in reducing coral disease progression through intensive and selective consumption of diseased coral tissues.

Spatial distribution of ciguateric fish in the Republic of Kiribati.

PubMed

Chan, Wing Hei; Mak, Yim Ling; Wu, Jia Jun; Jin, Ling; Sit, Wai Hung; Lam, James Chung Wah; Sadovy de Mitcheson, Yvonne; Chan, Leo Lai; Lam, Paul Kwan Sing; Murphy, Margaret B

2011-06-01

Ciguatera is food poisoning caused by human consumption of reef fish contaminated with ciguatoxins (CTXs). The expanding international trade of tropical fish species from ciguatera-endemic regions has resulted in increased global incidence of ciguatera, and more than 50000 people are estimated to suffer from ciguatera each year worldwide. The Republic of Kiribati is located in the Pacific Ocean; two of its islands, Marakei and Tarawa, have been suggested as high-risk areas for ciguatera. The toxicities of coral reef fish collected from these islands, including herbivorous, omnivorous and carnivorous fish (24% [n=41], 8% [n=13] and 68% [n=117], respectively), were analyzed using the mouse neuroblastoma assay (MNA) after CTX extraction. The MNA results indicated that 156 fish specimens, or 91% of the fish samples, were ciguatoxic (CTX levels >0.01 ng g(-1)). Groupers and moray eels were generally more toxic by an order of magnitude than other fish species. All of the collected individuals of eight species (n=3-19) were toxic. Toxicity varied within species and among locations by up to 10000-fold. Cephalapholis argus and Gymnothorax spp. collected from Tarawa Island were significantly less toxic than those from Marakei Island, although all individuals were toxic based on the 0.01 ng g(-1) threshold. CTX concentrations in the livers of individuals of two moray eel species (Gymnothorax spp., n=6) were nine times greater than those in muscle, and toxicity in liver and muscle showed a strong positive correlation with body weight. The present study provides quantitative information on the ciguatoxicity and distribution of toxicity in fish for use in fisheries management and public health. Copyright © 2011 Elsevier Ltd. All rights reserved.

High levels of perfluoroalkyl acids in sport fish species downstream of a firefighting training facility at Hamilton International Airport, Ontario, Canada.

PubMed

Gewurtz, Sarah B; Bhavsar, Satyendra P; Petro, Steve; Mahon, Chris G; Zhao, Xiaoming; Morse, Dave; Reiner, Eric J; Tittlemier, Sheryl A; Braekevelt, Eric; Drouillard, Ken

2014-06-01

A recent study reported elevated concentrations of perfluorooctane sulfonic acid (PFOS) and other perfluoroalkyl acids (PFAAs) in surface water, snapping turtles, and amphipods in Lake Niapenco, downstream of Hamilton International Airport, Ontario, Canada. Here, our goals were to 1) determine the extent of PFAA contamination in sport fish species collected downstream of the airport, 2) explore if the airport could be a potential source, and 3) compare fish PFOS concentrations to consumption advisory benchmarks. The PFOS levels in several sport fish collected from the three locations closest to the airport (<40km) were among the highest previously published in the peer-reviewed literature and also tended to exceed consumption benchmarks. The only other fish that had comparable concentrations were collected in a region affected by inputs from a major fluorinated chemical production facility. In contrast, PFOS concentrations in the two most downstream locations (>70km) were comparable to or below the average concentrations in fish as observed in the literature and were generally below the benchmarks. With regards to perfluorocarboxylates (PFCAs), there was no significant decrease in concentrations in fish with distance from the airport and levels were comparable to or below the average concentrations observed in the literature, suggesting that the airport is not a significant source of PFCAs in these fish species. PFOS-based aqueous film-forming foam (AFFF) was used at a firefighting training facility at the airport in the 1980s to mid-1990s. Taken together, our results provide evidence that the historical use of AFFF at the airport has resulted in fish PFOS concentrations that exceed the 95th percentile concentration of values reported in the literature to date. Crown Copyright © 2014. Published by Elsevier Ltd. All rights reserved.

Stable Isotopes in Ecological Sceinces: Bird and Fish Diet and Migration in Virginia

NASA Astrophysics Data System (ADS)

Schmidt, S.; Dias, R. F.; Ake, R.; Jones, C. M.

2002-12-01

The preservation of ecologically sensitive habitats for birds and fishes in Virginia requires a detailed understanding of the important changes in diet and migration over the life span of the animal. Stable isotope analysis offers the potential to assess migration and trophic level variability in birds and fishes from southeastern Virginia and the greater Chesapeake Bay. Fish of various species and ages from different locations throughout the Chesapeake Bay were analyzed for carbon-13 and nitrogen-15 bulk natural abundance. Of particular note, blue fish were found to have significantly higher d15N values than striped bass which are believed to be trophic competitors. Observations are discussed relative to the maturity of the different fish, variation in water-mass chemistry (N-inputs), local environmental habitats, trophic relationships and migratory habits. In conjunction with banding studies being conducted by Virginia Department of Game and Inland Fisheries in the Great Dismal Swamp (VA), breast feathers from Carolina Wren, Common Yellowthroat, Northern Cardinal, Ovenbird, and Prothonotary Warbler were analyzed for carbon-13 and nitrogen-15 bulk natural abundance. Given the preliminary nature of this work our ability to identify trends between species was less than satisfying, thus highlighting the need for larger sample populations over more than one breeding season. However, within a given species (most notably the Prothonotary Warbler) we are able to discern a change in diet. The hatching year Prothonotary warbler were more enriched in both carbon-13 and nitrogen-15 than the after-hatching-year (AHY) birds, indicating a change in food sources between the two age groups. By sampling over time and at various sample sites, isotopic analyses allow a more detailed investigation of the spatial and temporal variation in the diets and migratory habits of fishes and birds in Virginia and the Chesapeake Bay.

Seasonal and spatial variations in fish and macrocrustacean assemblage structure in Mad Island Marsh estuary, Texas

NASA Astrophysics Data System (ADS)

Akin, S.; Winemiller, K. O.; Gelwick, F. P.

2003-05-01

Fish and macrocrustacean assemblage structure was analyzed along an estuarine gradient at Mad Island Marsh (MIM), Matagorda Bay, TX, during March 1998-August 1999. Eight estuarine-dependent fish species accounted for 94% of the individual fishes collected, and three species accounted for 96% of macrocrustacean abundance. Consistent with evidence from other Gulf of Mexico estuarine studies, species richness and abundance were highest during late spring and summer, and lowest during winter and early spring. Sites near the bay supported the most individuals and species. Associations between fish abundance and environmental variables were examined with canonical correspondence analysis. The dominant gradient was associated with water depth and distance from the bay. The secondary gradient reflected seasonal variation and was associated with temperature, salinity, dissolved oxygen, and vegetation cover. At the scales examined, estuarine biota responded to seasonal variation more than spatial variation. Estuarine-dependent species dominated the fauna and were common throughout the open waters of the shallow lake during winter-early spring when water temperature and salinity were low and dissolved oxygen high. During summer-early fall, sub-optimal environmental conditions (high temperature, low DO) in upper reaches accounted for strong spatial variation in assemblage composition. Small estuarine-resident fishes and the blue crab ( Callinectes sapidus) were common in warm, shallow, vegetated inland sites during summer-fall. Estuarine-dependent species were common at deeper, more saline locations near the bay during this period. During summer, freshwater species, such as gizzard shad ( Dorosoma cepedianum) and gars ( Lepisosteus spp.), were positively associated with water depth and proximity to the bay. The distribution and abundance of fishes in MIM appear to result from the combined effects of endogenous, seasonal patterns of reproduction and migration operating on large spatial scales, and species-specific response to local environmental variation.

Lead exposure in young school children in South African subsistence fishing communities.

PubMed

Mathee, Angela; Khan, Taskeen; Naicker, Nisha; Kootbodien, Tahira; Naidoo, Shan; Becker, Piet

2013-10-01

Lead is an established toxic substance, with wide-ranging health effects, including neurodevelopmental decrements and behavioural problems, even at low levels in blood. Anecdotal reports of lead melting to make fishing sinkers in South African subsistence fishing communities prompted the conduct of an epidemiological study in two South African fishing villages to investigate the extent of lead melting and the associated risks in children. The objectives of the study were to determine the extent of lead melting, and the blood lead distributions and associated risk factors in children. Cross-sectional, analytical studies were undertaken among 160 young school children in the fishing villages of Struis Bay and Elands Bay located along the south-eastern and western South African coastline, respectively. Blood samples were collected for lead content analysis, and anthropometric and hemoglobin measurements were taken. Questionnaires were administered to obtain information about socio-economic status and risk factors for lead exposure. Blood lead levels ranged from 2.2 to 22.4 µg/dl, with the mean blood lead level equalling 7.4. Around 74% of the children had blood lead levels ≥5 µg/dl and 16% had blood lead levels ≥10 µg/dl. Socio-economic factors, and lead melting practices were strongly associated with elevated blood lead levels. Blood lead levels in these remote subsistence fishing communities were unexpectedly elevated, given the absence of local lead industries or other obvious sources of lead exposure. Lead exposure and poisoning is an important, yet neglected, public health concern in South African subsistence fishing communities, and potentially on the entire African continent. Copyright © 2013 Elsevier Inc. All rights reserved.

Modeling the fate of p,p'-DDT in water and sediment of two typical estuarine bays in South China: Importance of fishing vessels' inputs.

PubMed

Fang, Shu-Ming; Zhang, Xianming; Bao, Lian-Jun; Zeng, Eddy Y

2016-05-01

Antifouling paint applied to fishing vessels is the primary source of dichloro-diphenyl-trichloroethane (DDT) to the coastal marine environments of China. With the aim to provide science-based support of potential regulations on DDT use in antifouling paint, we utilized a fugacity-based model to evaluate the fate and impact of p,p'-DDT, the dominant component of DDT mixture, in Daya Bay and Hailing Bay, two typical estuarine bays in South China. The emissions of p,p'-DDT from fishing vessels to the aquatic environments of Hailing Bay and Daya Bay were estimated as 9.3 and 7.7 kg yr(-1), respectively. Uncertainty analysis indicated that the temporal variability of p,p'-DDT was well described by the model if fishing vessels were considered as the only direct source, i.e., fishing vessels should be the dominant source of p,p'-DDT in coastal bay areas of China. Estimated hazard quotients indicated that sediment in Hailing Bay posed high risk to the aquatic system, and it would take at least 21 years to reduce the hazards to a safe level. Moreover, p,p'-DDT tends to migrate from water to sediment in the entire Hailing Bay and Daya Bay. On the other hand, our previous research indicated that p,p'-DDT was more likely to migrate from sediment to water in the maricultured zones located in shallow waters of these two bays, where fishing vessels frequently remain. These findings suggest that relocating mariculture zones to deeper waters would reduce the likelihood of farmed fish contamination by p,p'-DDT. Copyright © 2016 Elsevier Ltd. All rights reserved.

Fatty acid-binding protein genes of the ancient, air-breathing, ray-finned fish, spotted gar (Lepisosteus oculatus).

PubMed

Venkatachalam, Ananda B; Fontenot, Quenton; Farrara, Allyse; Wright, Jonathan M

2018-03-01

With the advent of high-throughput DNA sequencing technology, the genomic sequence of many disparate species has led to the relatively new discipline of genomics, the study of genome structure, function and evolution. Much work has been focused on the role of whole genome duplications (WGD) in the architecture of extant vertebrate genomes, particularly those of teleost fishes which underwent a WGD early in the teleost radiation >230 million years ago (mya). Our past work has focused on the fate of duplicated copies of a multigene family coding for the intracellular lipid-binding protein (iLBP) genes in the teleost fishes. To define the evolutionary processes that determined the fate of duplicated genes and generated the structure of extant fish genomes, however, requires comparative genomic analysis with a fish lineage that diverged before the teleost WGD, such as the spotted gar (Lepisosteus oculatus), an ancient, air-breathing, ray-finned fish. Here, we describe the genomic organization, chromosomal location and tissue-specific expression of a subfamily of the iLBP genes that code for fatty acid-binding proteins (Fabps) in spotted gar. Based on this work, we have defined the minimum suite of fabp genes prior to their duplication in the teleost lineages ~230-400 mya. Spotted gar, therefore, serves as an appropriate outgroup, or ancestral/ancient fish, that did not undergo the teleost-specific WGD. As such, analyses of the spatio-temporal regulation of spotted gar genes provides a foundation to determine whether the duplicated fabp genes have been retained in teleost genomes owing to either sub- or neofunctionalization. Copyright © 2017 Elsevier Inc. All rights reserved.

Real-time streamflow conditions

USGS Publications Warehouse

Graczyk, David J.; Gebert, Warren A.

1996-01-01

Would you like to know streamflow conditions before you go fishing in Wisconsin or in more distant locations? Real-time streamflow data throughout Wisconsin and the United States are available on the Internet from the U.S. Geological Survey. You can see if the stream you are interested in fishing is high due to recent rain or low because of an extended dry spell. Flow conditions at more than 100 stream-gaging stations located throughout Wisconsin can be viewed by accessing the Wisconsin District Home Page at: http://wwwdwimdn.er.usgs.gov

Distribution and movement of humpback chub in the Colorado River, Grand Canyon, based on recaptures

USGS Publications Warehouse

Paukert, C.P.; Coggins, L.G.; Flaccus, C.E.

2006-01-01

Mark-recapture data from the federally endangered humpback chub Gila cypha in the Colorado River, Grand Canyon, were analyzed from 1989 to 2002 to determine large-scale movement patterns and distribution. A total of 14,674 recaptures from 7,127 unique fish were documented; 87% of the recaptures occurred in the same main-stem river reach or tributary as the original captures, suggesting restricted distribution by most fish. A total of 99% of all recaptures were from in and around the Little Colorado River (LCR), a tributary of the Colorado River and primary aggregation and spawning location of humpback chub in Grand Canyon. Time at liberty averaged 394 d, but some fish were recaptured near their main-stem capture location over 10 years later. Proportionally fewer large (>300-mm) humpback chub exhibited restricted distribution than small (<200-mm) fish. However, several fish did move more than 154 km throughout Grand Canyon between capture and recapture, suggesting that limited movement occurs throughout Grand Canyon. The majority of the recaptured fish remained in or returned to the LCR or the Colorado River near the LCR. Although many large-river fishes exhibit extensive migrations to fulfill their life history requirements, most of the humpback chub in Grand Canyon appear to remain in or come back to the LCR and LCR confluence across multiple sizes and time scales. Detecting trends in the overall abundance of this endangered fish in Grand Canyon can probably be accomplished by monitoring the area in and around the LCR.

Using a non-physical behavioural barrier to alter migration routing of juvenile Chinook salmon in the Sacramento–San Joaquin River Delta

USGS Publications Warehouse

Perry, R.W.; Romine, J.G.; Adams, N.S.; Blake, A.R.; Burau, J.R.; Johnston, S.V.; Liedtke, T.L.

2012-01-01

Anthropogenic alterations to river systems, such as irrigation and hydroelectric development, can negatively affect fish populations by reducing survival when fish are routed through potentially dangerous locations. Non-physical barriers using behavioural stimuli are one means of guiding fish away from such locations without obstructing water flow. In the Sacramento–San Joaquin River Delta, we evaluated a bio-acoustic fish fence (BAFF) composed of strobe lights, sound and a bubble curtain, which was intended to divert juvenile Chinook salmon (Oncorhynchus tshawytscha) away from Georgiana Slough, a low-survival migration route that branches off the Sacramento River. To quantify fish response to the BAFF, we estimated individual entrainment probabilities from two-dimensional movement paths of juvenile salmon implanted with acoustic transmitters. Overall, 7.7% of the fish were entrained into Georgiana Slough when the BAFF was on, and 22.3% were entrained when the BAFF was off, but a number of other factors influenced the performance of the BAFF. The effectiveness of the BAFF declined with increasing river discharge, likely because increased water velocities reduced the ability of fish to avoid being swept across the BAFF into Georgiana Slough. The BAFF reduced entrainment probability by up to 40 percentage points near the critical streakline, which defined the streamwise division of flow vectors entering each channel. However, the effect of the BAFF declined moving in either direction away from the critical streakline. Our study shows how fish behaviour and the environment interacted to influence the performance of a non-physical behavioural barrier in an applied setting.

Facilitation in Caribbean coral reefs: high densities of staghorn coral foster greater coral condition and reef fish composition.

PubMed

Huntington, Brittany E; Miller, Margaret W; Pausch, Rachel; Richter, Lee

2017-05-01

Recovery of the threatened staghorn coral (Acropora cervicornis) is posited to play a key role in Caribbean reef resilience. At four Caribbean locations (including one restored and three extant populations), we quantified characteristics of contemporary staghorn coral across increasing conspecific densities, and investigated a hypothesis of facilitation between staghorn coral and reef fishes. High staghorn densities in the Dry Tortugas exhibited significantly less partial mortality, higher branch growth, and supported greater fish abundances compared to lower densities within the same population. In contrast, partial mortality, branch growth, and fish community composition did not vary with staghorn density at the three other study locations where staghorn densities were lower overall. This suggests that density-dependent effects between the coral and fish community may only manifest at high staghorn densities. We then evaluated one facilitative mechanism for such density-dependence, whereby abundant fishes sheltering in dense staghorn aggregations deliver nutrients back to the coral, fueling faster coral growth, thereby creating more fish habitat. Indeed, dense staghorn aggregations within the Dry Tortugas exhibited significantly higher growth rates, tissue nitrogen, and zooxanthellae densities than sparse aggregations. Similarly, higher tissue nitrogen was induced in a macroalgae bioassay outplanted into the same dense and sparse aggregations, confirming greater bioavailability of nutrients at high staghorn densities. Our findings inform staghorn restoration efforts, suggesting that the most effective targets may be higher coral densities than previously thought. These coral-dense aggregations may reap the benefits of positive facilitation between the staghorn and fish community, favoring the growth and survivorship of this threatened species.

Risk to consumers from mercury in bluefish (Pomatomus saltatrix) from New Jersey: Size, season and geographical effects

PubMed Central

Burger, Joanna

2014-01-01

Relatively little attention has been devoted to the risks from mercury in saltwater fish, that were caught by recreational fisherfolk. Although the US Food and Drug Administration has issued advisories based on mercury for four saltwater species or groups of fish, there are few data on how mercury levels vary by size, season, or location. This paper examines total mercury levels in muscle of bluefish (Pomatomus saltatrix) collected from coastal New Jersey, mainly by recreational fishermen. Of primary interest was whether there were differences in mercury levels as a function of location, weight and length of the fish, and season, and in what risk mercury posed to the food chain, including people. Selenium was also measured because of its reported protective effects against mercury. Mercury levels averaged 0.35±0.02 (mean and standard error) ppm, and selenium levels averaged 0.37±0.01ppm (N = 206). In this study, 41% of the fish had mercury levels above 0.3 ppm, 20% had levels above 0.5 ppm, and 4% had levels above 1 ppm. Size was highly correlated with mercury levels, but not with selenium. While selenium levels did not vary at all with season, mercury levels decreased significantly. This relationship was not due to differences in the size of fish, since the fish collected in the summer were the smallest, but had intermediate mercury levels. Mercury levels declined from early June until November, particularly for the smaller-sized fish. While there were significant locational differences in mercury levels (but not selenium), these differences could be a result of size. The levels of mercury in bluefish are not sufficiently high to cause problems for the bluefish themselves, based on known adverse health effects levels, but are high enough to cause potential adverse health effects in sensitive birds and mammals that eat them, and to provide a potential health risk to humans who consume them. Fish larger than 50cm fork length averaged levels above 0.3 ppm, suggesting that eating them should be avoided by pregnant women, children, and others who are at risk. PMID:19643400

Risk to consumers from mercury in bluefish (Pomatomus saltatrix) from New Jersey: Size, season and geographical effects.

PubMed

Burger, Joanna

2009-10-01

Relatively little attention has been devoted to the risks from mercury in saltwater fish, that were caught by recreational fisherfolk. Although the US Food and Drug Administration has issued advisories based on mercury for four saltwater species or groups of fish, there are few data on how mercury levels vary by size, season, or location. This paper examines total mercury levels in muscle of bluefish (Pomatomus saltatrix) collected from coastal New Jersey, mainly by recreational fishermen. Of primary interest was whether there were differences in mercury levels as a function of location, weight and length of the fish, and season, and in what risk mercury posed to the food chain, including people. Selenium was also measured because of its reported protective effects against mercury. Mercury levels averaged 0.35+/-0.02 (mean and standard error)ppm, and selenium levels averaged 0.37+/-0.01ppm (N=206). In this study, 41% of the fish had mercury levels above 0.3ppm, 20% had levels above 0.5ppm, and 4% had levels above 1ppm. Size was highly correlated with mercury levels, but not with selenium. While selenium levels did not vary at all with season, mercury levels decreased significantly. This relationship was not due to differences in the size of fish, since the fish collected in the summer were the smallest, but had intermediate mercury levels. Mercury levels declined from early June until November, particularly for the smaller-sized fish. While there were significant locational differences in mercury levels (but not selenium), these differences could be a result of size. The levels of mercury in bluefish are not sufficiently high to cause problems for the bluefish themselves, based on known adverse health effects levels, but are high enough to cause potential adverse health effects in sensitive birds and mammals that eat them, and to provide a potential health risk to humans who consume them. Fish larger than 50cm fork length averaged levels above 0.3ppm, suggesting that eating them should be avoided by pregnant women, children, and others who are at risk.

Polychlorinated biphenyl congener patterns in fish near the Hanford Site (Washington State, USA).

PubMed

Rodenburg, Lisa A; Delistraty, Damon; Meng, Qingyu

2015-03-03

It is well-known that absorption, distribution, metabolism, and excretion (ADME) processes in fish can alter polychlorinated biphenyl (PCB) congener patterns in fish, but these patterns have never been investigated using an advanced source-apportionment tool. In this work, PCB congener patterns in freshwater fish were examined with positive matrix factorization (PMF). PCB congeners were quantified via EPA Method 1668 in fillet and carcass of six species in four study areas in the Columbia River near the Hanford Site. Six factors were resolved with PMF2 software. Depletion and enhancement of PCB congeners in factors, relative to Aroclor 1254, suggested biotransformation (via cytochrome P450) and bioaccumulation in fish, respectively. Notable differences were observed among species and across study locations. For example, sturgeon and whitefish exhibited congener patterns consistent with Aroclor weathering, suggesting potential PCB metabolism in these species. In terms of location, average concentration of total PCBs for all species combined was significantly higher (P < 0.05) at Hanford 100 and 300 areas, relative to upriver and downriver study sites. Furthermore, a distinct PCB signature in sturgeon and whitefish, collected at Hanford study areas, suggests that Hanford is a unique PCB source.

Linking social and ecological systems to sustain coral reef fisheries.

PubMed

Cinner, Joshua E; McClanahan, Timothy R; Daw, Tim M; Graham, Nicholas A J; Maina, Joseph; Wilson, Shaun K; Hughes, Terence P

2009-02-10

The ecosystem goods and services provided by coral reefs are critical to the social and economic welfare of hundreds of millions of people, overwhelmingly in developing countries [1]. Widespread reef degradation is severely eroding these goods and services, but the socioeconomic factors shaping the ways that societies use coral reefs are poorly understood [2]. We examine relationships between human population density, a multidimensional index of socioeconomic development, reef complexity, and the condition of coral reef fish populations in five countries across the Indian Ocean. In fished sites, fish biomass was negatively related to human population density, but it was best explained by reef complexity and a U-shaped relationship with socioeconomic development. The biomass of reef fishes was four times lower at locations with intermediate levels of economic development than at locations with both low and high development. In contrast, average biomass inside fishery closures was three times higher than in fished sites and was not associated with socioeconomic development. Sustaining coral reef fisheries requires an integrated approach that uses tools such as protected areas to quickly build reef resources while also building capacities and capital in societies over longer time frames to address the complex underlying causes of reef degradation.

Fish Assemblages in Three Northwest Florida Urbanized Bayous before and after Two Hurricanes

EPA Science Inventory

A six-year survey (1993 - 1998) is summarized for fish collected from chemically-contaminated, urbanized bayous in northwest Florida. Fifty-two monthly collections (January - November) were conducted by trawls and seines at 22 sites located in three adjacent bayous associated wi...

FISH TISSUE QUALITY IN NEAR-COASTAL AREAS OF THE GULF OF MEXICO RECEIVING POINT SOURCE DISCHARGES

EPA Science Inventory

The objective of this study was to determine inorganic and organic contaminant concentrations in edible tissue of fish collected from eight coastal areas receiving wastewater discharges and from two reference locations. Trace metal residues were statistically similar regardless o...

Environmental DNA for freshwater fish monitoring: insights for conservation within a protected area

PubMed Central

Sandin, Miguel M.; Beaulieu, Paul G.; Clusa, Laura; Martinez, Jose L.; Ardura, Alba; García-Vázquez, Eva

2018-01-01

Background Many fish species have been introduced in wild ecosystems around the world to provide food or leisure, deliberately or from farm escapes. Some of those introductions have had large ecological effects. The north American native rainbow trout (Oncorhynchus mykiss Walbaum, 1792) is one of the most widely farmed fish species in the world. It was first introduced in Spain in the late 19th century for sport fishing (Elvira 1995) and nowadays is used there for both fishing and aquaculture. On the other hand, the European native brown trout (Salmo trutta L.) is catalogued as vulnerable in Spain. Detecting native and invasive fish populations in ecosystem monitoring is crucial, but it may be difficult from conventional sampling methods such as electrofishing. These techniques encompass some mortality, thus are not adequate for some ecosystems as the case of protected areas. Environmental DNA (eDNA) analysis is a sensitive and non-invasive method that can be especially useful for rare and low-density species detection and inventory in water bodies. Methods In this study we employed two eDNA based methods (qPCR and nested PCR-RFLP) to detect salmonid species from mountain streams within a protected area, The Biosphere Reserve and Natural Park of Redes (Upper Nalón Basin, Asturias, Northern Spain), where brown trout is the only native salmonid. We also measured some habitat variables to see how appropriate for salmonids the area is. The sampling area is located upstream impassable dams and contains one rainbow trout fish farm. Results Employing qPCR methodology, brown trout eDNA was detected in all the nine sampling sites surveyed, while nested PCR-RFLP method failed to detect it in two sampling points. Rainbow trout eDNA was detected with both techniques at all sites in the Nalón River’ (n1, n2 and n3). Salmonid habitat units and water quality were high from the area studied. Discussion In this study, a high quantity of rainbow trout eDNA was found upstream and downstream of a fish farm located inside a Biosphere Reserve. Unreported escapes from the fish farm are a likely explanation of these results. Since salmonid habitat is abundant and the water quality high, the establishment of rainbow trout populations would be favored should escapes occur. Environmental DNA has here proved to be a valuable tool for species detection in freshwater environments, and the probe-based qPCR highly sensitive technique for detection of scarce species. We would recommend this method for routine monitoring and early detection of introduced species within natural reserves. PMID:29527421

DOE Office of Scientific and Technical Information (OSTI.GOV)

Paller, M.; Blas, S.

The upper portion of Lower Three Runs includes several ponds, reservoirs, and canals that were formerly used as a cooling system for nuclear production reactors. This area was divided into nine exposure areas (EAs) for the assessment of environmental contamination resulting from past reactor operations and other industrial processes. A tiered screening process identified several contaminants of potential concern including aluminum, cyanide, lead, manganese, mercury, DDD, DDE, and DDT. Risks posed by these contaminants to ecological receptors (river otter, belted kingfisher, raccoon, and blue heron) were assessed using contaminant exposure models that estimated contaminant intake resulting from ingestion of food,more » water, and sediment/ soil and compared these intakes with toxicity reference values (TRVs). The contaminant exposure models showed that the TRVs were not exceeded in the otter model, exceeded by aluminum in EA 7 (Pond 2 and associated canals) in the raccoon model, and exceeded by mercury in EAs 2, 3 (Pond B), 6 (Par Pond), and 8 (Ponds 4 and 5 and Canal to Pond C) in both the kingfisher and blue heron models. Hazard quotients (total exposure dose divided by the TRV) were 2.8 for aluminum and 1.7- 3.6 for mercury. The primary route of exposure for aluminum was the ingestion of soil, and the primary route of exposure for mercury was the ingestion of mercury contaminated fish. Elevated levels of mercury in fish were at least partly the result of the aerial deposition of mercury onto Lower Three Runs and its watershed. The atmospheric deposition of mercury creates pervasive contamination in fish throughout the Savannah River basin. Another possible source of mercury was the discharge of mercury contaminated Savannah River water into the Lower Three Runs cooling ponds and canals during previous years of reactor operation. This contamination originated from industries located upstream of the SRS. The aluminum exceedance for the raccoon was likely the result of naturally high aluminum levels in SRS soils rather than SRS operations. Aluminum exceedances have previously been observed in relatively undisturbed background locations as well as areas affected by SRS operations. Aluminum exceedances are more likely with the raccoon than the other receptors because it consumes more soil as a result of its feeding habits. Sensitivity analysis showed that model uncertainty can be reduced by adequate sampling of key variables (e.g., fish and sediments). Although sediment samples were collected from all EAs, fish samples were not collected from three EAs and some analytes (pesticides and cyanide) were not measured in fish. Water-to-fish concentration ratios were used to estimate contaminant levels in fish when direct measurements from fish were unavailable; however, such estimates are potentially less accurate than direct measurements.« less

Identifying sources of stress to native aquatic fauna using a watershed ecological risk assessment framework.

PubMed

Diamond, J M; Serveiss, V B

2001-12-15

The free-flowing Clinch and Powell River Basin, located in southwestern Virginia, United States, historically had one of the richest assemblages of native fish and freshwater mussels in the world. Nearly half of the species once residing here are now extinct, threatened, or endangered. The United States Environmental Protection Agency's framework for conducting an ecological risk assessment was used to structure a watershed-scale analysis of human land use, in-stream habitat quality, and their relationship to native fish and mussel populations in order to develop future management strategies and prioritize areas in need of enhanced protection. Our analyses indicate that agricultural and urban land uses as well as proximity to mining activities and transportation corridors are inversely related to fish index of biotic integrity (IBI) and mussel species diversity. Forward stepwise multiple regression analyses indicated that coal mining had the most impact on fish IBI followed by percent cropland and urban area in the riparian corridor (R2 = 0.55, p = 0.02); however, these analyses suggest that other site-specific factors are important. Habitat quality measures accounted for as much as approximately half of the variability in fish IBI values if the analysis was limited to sites within a relatively narrow elevation range. These results, in addition to other data collected in this watershed, suggest that nonhabitat-related stressors (e.g., accidental chemical spills) also have significant effects on biota in this basin. The number of co-occurring human land uses was inversely related to fish IBI (r = -0.49, p < 0.01). Sites with > or = 2 co-occurring land uses had >90% probability of having <2 mussel species present. Our findings predict that many mussel concentration sites are vulnerable to future extirpation. In addition, our results suggest that protection and enhancement of naturally vegetated riparian corridors, better controls of mine effluents and urban runoff, and increased safeguards against accidental chemical spills, as well as reintroduction or augmentation of threatened and endangered species, may help sustain native fish and mussel populations in this watershed.

Survival of Seaward-Migrating PIT and Acoustic-Tagged Juvenile Chinook Salmon in the Snake and Columbia Rivers: An Evaluation of Length-Specific Tagging Effects

DOE Office of Scientific and Technical Information (OSTI.GOV)

Brown, Richard S.; Oldenburg, Eric W.; Seaburg, Adam

Studies examining the survival of juvenile salmon as they emigrate to the ocean provide important information regarding the management of regulated river systems. Acoustic telemetry is a widely used tool for evaluating the behavior and survival of juvenile salmonids in the Columbia River basin. Thus, it is important to understand how the surgical tagging process and the presence of a transmitter affect survival so any biases can be accounted for or eliminated. This study evaluated the effects of fish length and tag type on the survival of yearling and subyearling Chinook salmon during their seaward migrations through the Snake andmore » Columbia rivers during 2006, 2007, and 2008. Fish were collected at Lower Granite Dam on the Snake River (river kilometer 695) and implanted with either only a passive integrated transponder (PIT) tag (PIT fish) or both a PIT tag and an acoustic transmitter (AT fish). Survival was estimated from release at Lower Granite Dam to multiple downstream locations (dams) using the Cormack–Jolly–Seber single release model, and analysis of variance was used to test for differences among length-classes and between tag types. No length-specific tag effect was detected between PIT and AT fish (i.e., length affected the survival of PIT fish in a manner similar to which it affected the survival of AT fish). Survival among the smallest length class (i.e., 80–89 mm) of both PIT and AT subyearling Chinook salmon was markedly low (i.e., 4%). Fish length was positively correlated with the survival of both PIT and AT fish. Significant differences in survival were detected between tag types; the survival of PIT fish was generally greater than that of AT fish. However, confounding variables warrant caution in making strong inferences regarding this factor. Further, results suggest that tag effects may be due to the process of surgically implanting the transmitter rather than the presence of the transmitter.« less

Novel Infection Site and Ecology of Cryptic Didymocystis sp. (Trematoda) in the Fish Scomberomorus maculatus.

PubMed

Schrandt, Meagan N; Andres, Michael J; Powers, Sean P; Overstreet, Robin M

2016-06-01

An undescribed, cryptic species of Didymocystis, as determined from sequences of 2 ribosomal genes and superficially similar to Didymocystis scomberomori ( MacCallum and MacCallum, 1916 ), infected the skin of the Spanish mackerel, Scomberomorus maculatus , in the north-central Gulf of Mexico (GOM). An analysis of 558 fish from 2011 to 2013 from Louisiana, Mississippi, Alabama, and the Florida panhandle showed the prevalence of the trematode varied both spatially and temporally but not with sex of the fish host. Month, year, and geographic location were identified by a negative binomial generalized linear model as indicators of the abundance and intensity of infection. Prevalence, abundance, and intensity of infection were greatest in spring and fall months off the Florida panhandle. Furthermore, the abundance and intensity of infection correlated negatively with fork length, weight, and gonad weight of mature fish but positively with longitude. Therefore, smaller adult fish tended to be more infected than larger adults, and prevalence and intensity increased from west to east (Louisiana to Florida). Spatial and temporal trends seemed to result from physical factors (e.g., water temperature, salinity, bottom type), but they also coincided with the annual migration of S. maculatus as fish moved northward along the GOM coastline from the southern tip of Florida in the spring months and returned in the fall, being present in the north-central GOM from late spring through fall. This pattern suggests the possibility that acquisition of infections occurred from a molluscan host in waters off the Florida panhandle.

DOE Office of Scientific and Technical Information (OSTI.GOV)

Leathe, Stephen A.; Enk, Michael D.

This study was designed to develop and apply methods to evaluate the cumulative effects of 20 proposed small hydro projects on the fisheries resources of the Swan River drainage located in northwestern Montana. Fish population and reach classification information was used to estimate total populations of 107,000 brook trout, 65,000 cut-throat trout and 31,000 juvenile bull trout within the tributary system. Distribution, abundance, and life history of fish species in the drainage and their contribution to the sport fishery were considered in the cumulative impact analysis. Bull trout were chosen as the primary species of concern because of their extensivemore » use of project areas, sensitivity to streambed sedimentation, and their importance to the lake and river sport fisheries. Dewatering of hydroelectric diversion zones and streambed sedimentation (resulting from forest and small hydro development) were the major impacts considered. The developer proposed to divert up to the entire streamflow during low flow months because maintenance of recommended minimum bypass flows would not allow profitable project operation. Dewatering was assumed to result in a total loss of fish production in these areas. 105 refs., 19 figs., 38 tabs.« less

Cryptic Translocation Identification in Human and Mouse using Several Telomeric Multiplex FISH (TM-FISH) Strategies

DOE Office of Scientific and Technical Information (OSTI.GOV)

Henegariu, O; Artan, S; Greally, J M

2003-08-19

Experimental data published in recent years showed that up to 10% of all cases with mild to severe idiopathic mental retardation may result from small rearrangements of the subtelomeric regions of human chromosomes. To detect such cryptic translocations, we developed a ''telomeric'' multiplex FISH assay, using a set of previously published and commercially available subtelomeric probes. This set of probes includes 41 cosmid/PAC/P1 clones located from less than 100kb to about 1 Mb from the end of the chromosomes. Similarly, a published mouse probe set, comprised of BACs hybridizing to the closest known marker toward the centromere and telomere ofmore » each mouse chromosome, was used to develop a mouse-specific ''telomeric'' M-FISH. Three different combinatorial labeling strategies were used to simultaneously detect all human sub-telomeric regions on one slide. The simplest approach uses only three fluors, and can be performed in laboratories lacking sophisticated imaging equipment or personnel highly trained in cytogenetics. A standard fluorescence microscope equipped with only three filters is sufficient. Fluor-dUTPs and labeled probes can be custom-made, thus dramatically reducing costs. Images can be prepared using generic imaging software (Adobe Photoshop), and analysis performed by simple visual inspection.« less

Constitutive expression of thymidylate synthase from LCDV-C induces a transformed phenotype in fish cells.

PubMed

Zhao, Zhe; Shi, Yan; Ke, Fei; Wei, Sun; Gui, Jianfang; Zhang, Qiya

2008-03-01

Thymidylate synthase (TS), an essential enzyme in DNA synthesis and repair, plays a key role in the events of cell cycle regulation and tumor formation. Here, an investigation was presented about subcellular location and biological function of viral TS from lymphocystis disease virus from China (LCDV-C) in fish cells. Fluorescence microscopy revealed that LCDV-C TS was predominantly localized in the cytoplasm in fish cells. Cell cycle analysis demonstrated that LCDV-C TS promoted cell cycle progression into S and G2/M phase in the constitutive expressed cells. As a result, the cells have a faster growth rate compared with the control cells as revealed by cell growth curves. For foci assay, the TS-expressed cells gave rise to foci 4-5 weeks after incubation. Microscopic examination of the TS-induced foci revealed multilayered growth and crisscross morphology characteristic of transformed cells. Moreover, LCDV-C TS predisposed the transfected cells to acquire an anchorage-independent phenotype and could grow in 0.3% soft agar. So the data reveal LCDV-C TS is sufficient to induce a transformed phenotype in fish cells in vitro and exhibits its potential ability in cell transformation. To our knowledge, it is the first report on viral TS sequences associated with transforming activity.

Spatial and temporal patterns of macrozoobenthic community inhabiting sediments under tropical fish farming

NASA Astrophysics Data System (ADS)

Aufa, Abdullah; Hadi, Mochamad; Purnomo Putro, Sapto

2018-05-01

Macrozoobenthic animals is one of biota that may be used to assess the impact of the activities. They inhabit sediment of water ecosystem and may respond vary at different spatiotemporal scales. The purpose of this study is to study spatial and temporal patterns of macrozoobenthic community under fish farming activities at coastal area of Tembelas Island, Kepulauan Riau Province, Indonesia. The macrozoobenthic assemblages were assessedat three sampling locations, i.e. policulture [IMTA], monoculture and reference sites. Each sampling location consisted of three stations with three replicates for each station. The data obtained were analyzed using PRIMER software V.6.1.5. to compare number of taxa (S), Shanon- Wiener diversity index (H’), and Pielou’s evenness index (e) and K-dominance cumulative curves between sites and times. The results showed that diversity index at fish farming locations (IMTA and monoculture) exhibited lower than those at reference site, between 1.58 – 2.19 and between 1.99-2.84, respectively. However, diversity at all locations were considered moderate diverse ecosystem. Meanwhile, Pielou’s evenness indexbetween locations and sampling time showed no majordifference, ranging between 0.96-0.98. Based on K-dominance curves, P3T2 station curve was positioned on the top among other curves, implying certain taxa has dominated the assemblages, i.e. Nassarius sp. (Gastropod).

Evaluation of reproductive endocrine status in hornyhead turbot sampled from Southern California's urbanized coastal environments.

PubMed

Reyes, Jesus A; Vidal-Dorsch, Doris E; Schlenk, Daniel; Bay, Steven M; Armstrong, Jeffrey L; Gully, Joseph R; Cash, Curtis; Baker, Michael; Stebbins, Timothy D; Hardiman, Gary; Kelley, Kevin M

2012-12-01

As part of a regionwide collaboration to determine the occurrence of contaminants and biological effects in coastal ecosystems offshore of urban southern California, the present study characterized the reproductive endocrinology of an indigenous flatfish, the hornyhead turbot (Pleuronichthys verticalis), and compared groups sampled from different study sites representing varying degrees of pollution to screen for potential endocrine disruptive effects. Turbot were sampled from locations near the coastal discharge sites of four large municipal wastewater treatment plants (WWTPs) located between Los Angeles and San Diego, California, USA, and were compared with fish sampled from three far-field reference locations in the region. Despite environmental presence of both legacy contaminants and contaminants of emerging concern and evidence for fish exposure to several classes of contaminants, both males and females generally exhibited coordinated seasonal reproductive cycles at all study sites. Patterns observed included peaks in sex steroids (17β-estradiol, testosterone, 11-ketotestosterone) in the spring and low levels in the fall, changes corresponding to similarly timed gonadal changes and plasma vitellogenin concentrations in females. Comparisons between fish captured at the different study sites demonstrated some regional differences in plasma levels of estrogens and androgens, indicative of location-associated effects on the endocrine system. The observed differences, however, could not be linked to the ocean discharge locations of four of the largest WWTPs in the world. Copyright © 2012 SETAC.

Segmental duplications and evolutionary plasticity at tumor chromosome break-prone regions

PubMed Central

Darai-Ramqvist, Eva; Sandlund, Agneta; Müller, Stefan; Klein, George; Imreh, Stefan; Kost-Alimova, Maria

2008-01-01

We have previously found that the borders of evolutionarily conserved chromosomal regions often coincide with tumor-associated deletion breakpoints within human 3p12-p22. Moreover, a detailed analysis of a frequently deleted region at 3p21.3 (CER1) showed associations between tumor breaks and gene duplications. We now report on the analysis of 54 chromosome 3 breaks by multipoint FISH (mpFISH) in 10 carcinoma-derived cell lines. The centromeric region was broken in five lines. In lines with highly complex karyotypes, breaks were clustered near known fragile sites, FRA3B, FRA3C, and FRA3D (three lines), and in two other regions: 3p12.3-p13 (∼75 Mb position) and 3q21.3-q22.1 (∼130 Mb position) (six lines). All locations are shown based on NCBI Build 36.1 human genome sequence. The last two regions participated in three of four chromosome 3 inversions during primate evolution. Regions at 75, 127, and 131 Mb positions carry a large (∼250 kb) segmental duplication (tumor break-prone segmental duplication [TBSD]). TBSD homologous sequences were found at 15 sites on different chromosomes. They were located within bands frequently involved in carcinoma-associated breaks. Thirteen of them have been involved in inversions during primate evolution; 10 were reused by breaks during mammalian evolution; 14 showed copy number polymorphism in man. TBSD sites showed an increase in satellite repeats, retrotransposed sequences, and other segmental duplications. We propose that the instability of these sites stems from specific organization of the chromosomal region, associated with location at a boundary between different CG-content isochores and with the presence of TBSDs and “instability elements,” including satellite repeats and retroviral sequences. PMID:18230801

Segmental duplications and evolutionary plasticity at tumor chromosome break-prone regions.

PubMed

Darai-Ramqvist, Eva; Sandlund, Agneta; Müller, Stefan; Klein, George; Imreh, Stefan; Kost-Alimova, Maria

2008-03-01

We have previously found that the borders of evolutionarily conserved chromosomal regions often coincide with tumor-associated deletion breakpoints within human 3p12-p22. Moreover, a detailed analysis of a frequently deleted region at 3p21.3 (CER1) showed associations between tumor breaks and gene duplications. We now report on the analysis of 54 chromosome 3 breaks by multipoint FISH (mpFISH) in 10 carcinoma-derived cell lines. The centromeric region was broken in five lines. In lines with highly complex karyotypes, breaks were clustered near known fragile sites, FRA3B, FRA3C, and FRA3D (three lines), and in two other regions: 3p12.3-p13 ( approximately 75 Mb position) and 3q21.3-q22.1 ( approximately 130 Mb position) (six lines). All locations are shown based on NCBI Build 36.1 human genome sequence. The last two regions participated in three of four chromosome 3 inversions during primate evolution. Regions at 75, 127, and 131 Mb positions carry a large ( approximately 250 kb) segmental duplication (tumor break-prone segmental duplication [TBSD]). TBSD homologous sequences were found at 15 sites on different chromosomes. They were located within bands frequently involved in carcinoma-associated breaks. Thirteen of them have been involved in inversions during primate evolution; 10 were reused by breaks during mammalian evolution; 14 showed copy number polymorphism in man. TBSD sites showed an increase in satellite repeats, retrotransposed sequences, and other segmental duplications. We propose that the instability of these sites stems from specific organization of the chromosomal region, associated with location at a boundary between different CG-content isochores and with the presence of TBSDs and "instability elements," including satellite repeats and retroviral sequences.

Macroscopic Streamer Growths in Acidic, Metal-Rich Mine Waters in North Wales Consist of Novel and Remarkably Simple Bacterial Communities

PubMed Central

Hallberg, Kevin B.; Coupland, Kris; Kimura, Sakurako; Johnson, D. Barrie

2006-01-01

The microbial composition of acid streamers (macroscopic biofilms) in acidic, metal-rich waters in two locations (an abandoned copper mine and a chalybeate spa) in north Wales was studied using cultivation-based and biomolecular techniques. Known chemolithotrophic and heterotrophic acidophiles were readily isolated from disrupted streamers, but they accounted for only <1 to 7% of the total microorganisms present. Fluorescent in situ hybridization (FISH) revealed that 80 to 90% of the microbes in both types of streamers were β-Proteobacteria. Terminal restriction fragment length polymorphism analysis of the streamers suggested that a single bacterial species was dominant in the copper mine streamers, while two distinct bacteria (one of which was identical to the bacterium found in the copper mine streamers) accounted for about 90% of the streamers in the spa water. 16S rRNA gene clone libraries showed that the β-proteobacterium found in both locations was closely related to a clone detected previously in acid mine drainage in California and that its closest characterized relatives were neutrophilic ammonium oxidizers. Using a modified isolation technique, this bacterium was isolated from the copper mine streamers and shown to be a novel acidophilic autotrophic iron oxidizer. The β-proteobacterium found only in the spa streamers was closely related to the neutrophilic iron oxidizer Gallionella ferruginea. FISH analysis using oligonucleotide probes that targeted the two β-proteobacteria confirmed that the biodiversity of the streamers in both locations was very limited. The microbial compositions of the acid streamers found at the two north Wales sites are very different from the microbial compositions of the previously described acid streamers found at Iron Mountain, California, and the Rio Tinto, Spain. PMID:16517651

POSSIBLE RAMIFICATIONS OF HIGHER MERCURY CONCENTRATIONS IN FILLET TISSUE OF SKINNIER FISH

EPA Science Inventory

Mercury concentrations were found to be statistically higher in the fillet tissue of the skinnier individuals of a fish species (striped bass) that was experiencing starvation when collected from Lake Mead, which is located on the Arizona-Nevada border. This is considered a conse...

Innoko National Wildlife Refuge land cover mapping project users guide

USGS Publications Warehouse

Markon, Carl J.

1987-01-01

Conservation Act of 1980 (ANILCA, 1980) requires the Secretary of Interior to conduct a continuing study of fish, wildlife, and habitats on the Innoko National Wildlife Refuge (INWR). Included in this study is a determination of the extent, location, and carrying capacity of fish and wildlife habitats.

Why Does the Goldfish Disappear in the Fishbowl?

ERIC Educational Resources Information Center

Zhu, Yuhua; Shi, Fengliang

2009-01-01

You may have observed that a small goldfish swimming in a spherical fishbowl can suddenly disappear. Why does this happen? The effect is due to total internal reflection. In this paper we find the locations of the fish and the observer's eye for which the fish cannot be seen.

MERCURY IN SEDIMENT AND FISH FROM NORTH MISSISSIPPI LAKES.

EPA Science Inventory

Sediments and/or fish were collected from Sardis, Enid and Grenada Lakes, which are located in three different watersheds in North Mississippi, in order to assess mercury contamination. The mean total mercury concentration in sediments from Enid Lake in 1997 was 0.154 mg Hg/kg, w...

30 CFR 779.25 - Cross sections, maps, and plans.

Code of Federal Regulations, 2012 CFR

2012-07-01

... locations of monitoring stations used to gather data for water quality and quantity, fish and wildlife, and... encountered, within the proposed permit or adjacent areas; (7) Location of surface water bodies such as... the proposed permit area; (9) Location and dimensions of existing areas of spoil, waste, and non-coal...

30 CFR 779.25 - Cross sections, maps, and plans.

Code of Federal Regulations, 2010 CFR

2010-07-01

... locations of monitoring stations used to gather data for water quality and quantity, fish and wildlife, and... encountered, within the proposed permit or adjacent areas; (7) Location of surface water bodies such as... the proposed permit area; (9) Location and dimensions of existing areas of spoil, waste, and non-coal...

30 CFR 783.25 - Cross sections, maps, and plans.

Code of Federal Regulations, 2014 CFR

2014-07-01

...) Elevations and locations of monitoring stations used to gather data on water quality and quantity, fish and... aquifers on cross-sections and contour maps; (7) Location of surface water bodies such as streams, lakes... permit area; (9) Location and dimensions of existing areas of spoil, waste, coal development waste, and...

30 CFR 779.25 - Cross sections, maps, and plans.

Code of Federal Regulations, 2014 CFR

2014-07-01

... locations of monitoring stations used to gather data for water quality and quantity, fish and wildlife, and... encountered, within the proposed permit or adjacent areas; (7) Location of surface water bodies such as... the proposed permit area; (9) Location and dimensions of existing areas of spoil, waste, and non-coal...

30 CFR 783.25 - Cross sections, maps, and plans.

Code of Federal Regulations, 2011 CFR

2011-07-01

...) Elevations and locations of monitoring stations used to gather data on water quality and quantity, fish and... aquifers on cross-sections and contour maps; (7) Location of surface water bodies such as streams, lakes... permit area; (9) Location and dimensions of existing areas of spoil, waste, coal development waste, and...

30 CFR 783.25 - Cross sections, maps, and plans.

Code of Federal Regulations, 2010 CFR

2010-07-01

...) Elevations and locations of monitoring stations used to gather data on water quality and quantity, fish and... aquifers on cross-sections and contour maps; (7) Location of surface water bodies such as streams, lakes... permit area; (9) Location and dimensions of existing areas of spoil, waste, coal development waste, and...

30 CFR 779.25 - Cross sections, maps, and plans.

Code of Federal Regulations, 2011 CFR

2011-07-01

... locations of monitoring stations used to gather data for water quality and quantity, fish and wildlife, and... encountered, within the proposed permit or adjacent areas; (7) Location of surface water bodies such as... the proposed permit area; (9) Location and dimensions of existing areas of spoil, waste, and non-coal...

30 CFR 783.25 - Cross sections, maps, and plans.

Code of Federal Regulations, 2012 CFR

2012-07-01

...) Elevations and locations of monitoring stations used to gather data on water quality and quantity, fish and... aquifers on cross-sections and contour maps; (7) Location of surface water bodies such as streams, lakes... permit area; (9) Location and dimensions of existing areas of spoil, waste, coal development waste, and...

30 CFR 783.25 - Cross sections, maps, and plans.

Code of Federal Regulations, 2013 CFR

2013-07-01

...) Elevations and locations of monitoring stations used to gather data on water quality and quantity, fish and... aquifers on cross-sections and contour maps; (7) Location of surface water bodies such as streams, lakes... permit area; (9) Location and dimensions of existing areas of spoil, waste, coal development waste, and...

30 CFR 779.25 - Cross sections, maps, and plans.

Code of Federal Regulations, 2013 CFR

2013-07-01

... locations of monitoring stations used to gather data for water quality and quantity, fish and wildlife, and... encountered, within the proposed permit or adjacent areas; (7) Location of surface water bodies such as... the proposed permit area; (9) Location and dimensions of existing areas of spoil, waste, and non-coal...

Parasitism of the isopod Artystone trysibia in the fish Chaetostoma dermorhynchum from the Tena River (Amazonian region, Ecuador).

PubMed

Junoy, Juan

2016-01-01

The isopod Artystone trysibia Schioedte, 1866 is described by using a collection of specimens that were found parasitizing loricariid fish Chaetostoma dermorhynchum Boulenger, 1887 in the Tena River (Napo province, Ecuador, Amazonian region). Additionally to freshly collected specimens, complementary data of the parasite was obtained from preserved fishes at Ecuadorian museums. This is the first record of A. trysibia in Ecuador, and the most upstream location for the species. The new host fish, Chaetostoma dermorhynchum, is used locally as food. Copyright © 2015 Elsevier B.V. All rights reserved.

Population interactions among free-living bluefish and prey fish in an ocean environment.

PubMed

Safina, Carl; Burger, Joanna

1989-04-01

We used sonar to measure relative abundance, location, and depth of prey fish schools (primarily Anchoa and Ammodytes) in the ocean near Fire Island Inlet, New York from May to August for 4 years to examine predatorprey interactions. Prey fish numbers built through May, peaked in June, and thereafter declined coincident with the arrival of predatory bluefish. Bluefish abundance and feeding behavior correlated inversely with prey fish abundance and depth. Bluefish may drive seasonal patterns of prey abundance and distribution in this area through direct predation and by causing prey to flee.

Stock discrimination of spottedtail goby ( Synechogobius ommaturus) in the Yellow Sea by analysis of otolith shape

NASA Astrophysics Data System (ADS)

Wang, Yingjun; Ye, Zhenjiang; Liu, Qun; Cao, Liang

2011-01-01

Otolith shape is species specific and is an ideal marker of fish population affiliation. In this study, otolith shape of spottedtail goby Synechogobius ommaturus is used to identify stocks in different spawning locations in the Yellow Sea. The main objectives of this study are to explore the potential existence of local stocks of spottedtail goby in the Yellow Sea by analysis of otolith shape, and to investigate ambient impacts on otolith shape. Spottedtail goby was sampled in five locations in the Yellow Sea in 2007 and 2008. Otoliths are described using variables correlated to size (otolith area, perimeter, length, width, and weight) and shape (rectangularity, circularity, and 20 Fourier harmonics). Only standardized otolith variables are used so that the effect of otolith size on the shape variables could be eliminated. There is no significant difference among variables of sex, year, and side (left and right). However, the otolith shapes of the spring stocks and the autumn stocks differ significantly. Otolith shape differences are greater among locations than between years. Correct classification rate of spottedtail goby with the otolith shape at different sampling locations range from 29.7%-77.4%.

LJUBLJANICA CONNECTS - Restoration of the Ljubljanica River corridor and improvement of the river's flow regime

NASA Astrophysics Data System (ADS)

Zabret, Katarina; Sapač, Klaudija; Šraj, Mojca; Bezak, Nejc; Sečnik, Matej; Vidmar, Andrej; Brilly, Mitja

2016-04-01

The project Ljubljanica connects is focused on improving connectivity and living conditions in Ljubljanica River which flows through capital city of Slovenia, Ljubljana. It represents living environment for endangered and Natura 2000 targeted fish species Danube Salmon (Hucho hucho), Danube Roach (Rutilus pigus) and Striped Chub (Leuciscus souffia). The project consists of four sets of activities: concrete restoration actions including improvement of two fish passes, monitoring of fish migration, monitoring of eco-hydrological parameters, and raising of public awareness. To improve living conditions the concrete restoration measures were performed. The reconstructions of sill and two fish passes on the Ljubljanica River have been implemented and barrier's lifting system on the weir was modernized. Above the sill in Zalog there is an oxbow which was disconnected with main river channel during the low flows. Interrupted inflow of fresh water caused very poor living conditions for animals in the oxbow. The raise of the sill helped to improve this situation. One of the fish passes included in the project is more than 100 years old whereas both are protected as cultural and technical heritage. None was working properly and due to the protection no visible nor drastic measures were allowed. With smaller improvements we managed to re-establish their operation. A lifting system of the barrier at the Ambrožev trg gate was outdated and did not allow precise regulation of the water level. Too fast raising of the barrier instantly caused deterioration of eco-hydrological conditions downstream. With modernization of the electromechanical equipment the situation is improved. The fish monitoring helps us to evaluate success of concrete restoration actions. The fish population status is monitored with marking the fish with Visible Implant Elastomer (VIE) tags. Regarding the location of catch we implant tags beneath transparent or translucent tissue combining different tag locations (dorsal fin, post ocular tissue) and colours (red, yellow). The success of restoration of fish passes is monitored with the use of on line connected cameras installed in the fish passes. Records from the camera are analysed to evaluate number and type of fish using the fish passes. For further evaluation of living conditions the eco-hydrological monitoring of water temperature, its level, and oxygen concentration is continuously implemented on 17 measurement stations. Occasionally near those permanent measurement stations we also measure the discharge. On a few locations temperature was additionally measured also with optical cable. We would like to present our activities and results of the project to a broader public so that they would be aware of what is happening around them. One of the most popular activities are thematic presentations and field workshops for school children and students.

Chemical contamination of the Rybinsk Reservoir, northwest Russia: Relationship between liver polychlorinated biphenyls (PCB) content and health indicators in bream (Abramis brama)

USGS Publications Warehouse

Chuiko, Grigorii M.; Tillitt, Donald E.; Zajicek, James L.; Flerov, Boris A.; Stepanova, Vera M.; Zhelnin, Yuri Y.; Podgornaya, Vera A.

2007-01-01

The Rybinsk Reservoir (Russia) is the largest artificial waterbody in Europe (4550 km2) and provides drinking water for population of the cities located along the coast line. Industrialization in Cherepovets at the northeastern portion of the reservoir, including one of the largest metallurgical facilities in Europe, has resulted in chemical contamination of the reservoir. The extent of polychlorinated biphenyls (PCB) contamination in bream liver, a common fish species, taken from six locations in the Rybinsk Reservoir and Volga River, and biochemical and morphometric biomarkers of fish health were investigated. Liver PCB concentrations ranged from non-detected to 3.4 μg/g wet wt of liver, with the greatest concentrations found in fish taken near the industrialized area in Sheksna Reach of Rybinsk Reservoir. The source of the bream contamination is the PCB pollution of bottom organisms and sediments conditioned with industrialization facilities of Cherepovets. The patterns of the PCB congeners in the livers of bream taken near Cherepovets were similar at all of the stations that were sampled around the reservoir and Volga River. Among the common fish health biomarkers used only liver total ChE activity and liver-somatic index in bream near Cherepovets can reflect environmental pollution. Other morphometric (FCF, Clark’s condition factors, and spleen-somatic index) and biochemical (protein content and acetylcholinesterase activity in the brain) biomarkers related with fish health varied among locations, but were not correlated to the concentrations of PCBs in the bream livers.

Paraneurons in the gills and airways of fishes.

PubMed

Zaccone, G; Fasulo, S; Ainis, L; Licata, A

1997-04-01

This chapter describes the distributional patterns of the neuroendocrine cells in the respiratory surfaces of fishes and their bioactive secretions which are compared with similar elements in higher vertebrates. The neuroendocrine cells in the airways of fishes differentiate as solitary and clustered cells, but the clusters are not converted into neuroepithelial bodies which are reported in terrestrial vertebrates. The dipnoan fish Protopterus has innervated neuroendocrine cells in the pneumatic duct region. In Polypterus and Amia the lungs have neuroendocrine cells that are apparently not innervated. Two types of neuroendocrine cells are found in the gill of teleost fishes. These cells are very different by their location, structure and immunohistochemistry. Advanced studies on functional morphology of neuroendocrine cells in fish airways are still necessary to increase our understanding of their multifunctional role in the gill area.

Counter-Gradient Variation in Respiratory Performance of Coral Reef Fishes at Elevated Temperatures

PubMed Central

Gardiner, Naomi M.; Munday, Philip L.; Nilsson, Göran E.

2010-01-01

The response of species to global warming depends on how different populations are affected by increasing temperature throughout the species' geographic range. Local adaptation to thermal gradients could cause populations in different parts of the range to respond differently. In aquatic systems, keeping pace with increased oxygen demand is the key parameter affecting species' response to higher temperatures. Therefore, respiratory performance is expected to vary between populations at different latitudes because they experience different thermal environments. We tested for geographical variation in respiratory performance of tropical marine fishes by comparing thermal effects on resting and maximum rates of oxygen uptake for six species of coral reef fish at two locations on the Great Barrier Reef (GBR), Australia. The two locations, Heron Island and Lizard Island, are separated by approximately 1200 km along a latitudinal gradient. We found strong counter-gradient variation in aerobic scope between locations in four species from two families (Pomacentridae and Apogonidae). High-latitude populations (Heron Island, southern GBR) performed significantly better than low-latitude populations (Lizard Island, northern GBR) at temperatures up to 5°C above average summer surface-water temperature. The other two species showed no difference in aerobic scope between locations. Latitudinal variation in aerobic scope was primarily driven by up to 80% higher maximum rates of oxygen uptake in the higher latitude populations. Our findings suggest that compensatory mechanisms in high-latitude populations enhance their performance at extreme temperatures, and consequently, that high-latitude populations of reef fishes will be less impacted by ocean warming than will low-latitude populations. PMID:20949020

Genomic Organization of the Murine Miller–Dieker/Lissencephaly Region: Conservation of Linkage with the Human Region

PubMed Central

Hirotsune, Shinji; Pack, Svetlana D.; Chong, Samuel S.; Robbins, Christiane M.; Pavan, William J.; Ledbetter, David H.; Wynshaw-Boris, Anthony

1997-01-01

Several human syndromes are associated with haploinsufficiency of chromosomal regions secondary to microdeletions. Isolated lissencephaly sequence (ILS), a human developmental disease characterized by a smooth cerebral surface (classical lissencephaly) and microscopic evidence of incomplete neuronal migration, is often associated with small deletions or translocations at chromosome 17p13.3. Miller–Dieker syndrome (MDS) is associated with larger deletions of 17p13.3 and consists of classical lissencephaly with additional phenotypes including facial abnormalities. We have isolated the murine homologs of three genes located inside and outside the MDS region: Lis1, Mnt/Rox, and 14-3-3ε. These genes are all located on mouse chromosome 11B2, as determined by metaphase FISH, and the relative order and approximate gene distance was determined by interphase FISH analysis. The transcriptional orientation and intergenic distance of Lis1 and Mnt/Rox were ascertained by fragmentation analysis of a mouse yeast artificial chromosome containing both genes. To determine the distance and orientation of 14-3-3ε with respect to Lis1 and Mnt/Rox, we introduced a super-rare cutter site (VDE) that is unique in the mouse genome into 14-3-3ε by gene targeting. Using the introduced VDE site, the orientation of this gene was determined by pulsed field gel electrophoresis and Southern blot analysis. Our results demonstrate that the MDS region is conserved between human and mouse. This conservation of linkage suggests that the mouse can be used to model microdeletions that occur in ILS and MDS. PMID:9199935

Winter Fish Populations in Probable Locations of Air Bubblers in the St. Marys River-Lake Superior Area

DTIC Science & Technology

1980-09-01

Lawrence Seaway Navigation Season Extension, Draft Main Report and Environmental Statement. Detroit, Michigan. Potential effects on fish were discussed...to keep channels ice free for winter vessel passage. The stucies were Jone to determine base line ecological conditions and the effects of the...Subjects were: "Ecological effects of air bub- blers in the winter, a partially annotated bibliography" and "Annotated bibliography on winter fish and

Human, Oceanographic and Habitat Drivers of Central and Western Pacific Coral Reef Fish Assemblages

PubMed Central

Williams, Ivor D.; Baum, Julia K.; Heenan, Adel; Hanson, Katharine M.; Nadon, Marc O.; Brainard, Russell E.

2015-01-01

Coral reefs around US- and US-affiliated Pacific islands and atolls span wide oceanographic gradients and levels of human impact. Here we examine the relative influence of these factors on coral reef fish biomass, using data from a consistent large-scale ecosystem monitoring program conducted by scientific divers over the course of >2,000 hours of underwater observation at 1,934 sites, across ~40 islands and atolls. Consistent with previous smaller-scale studies, our results show sharp declines in reef fish biomass at relatively low human population density, followed by more gradual declines as human population density increased further. Adjusting for other factors, the highest levels of oceanic productivity among our study locations were associated with more than double the biomass of reef fishes (including ~4 times the biomass of planktivores and piscivores) compared to islands with lowest oceanic productivity. Our results emphasize that coral reef areas do not all have equal ability to sustain large reef fish stocks, and that what is natural varies significantly amongst locations. Comparisons of biomass estimates derived from visual surveys with predicted biomass in the absence of humans indicated that total reef fish biomass was depleted by 61% to 69% at populated islands in the Mariana Archipelago; by 20% to 78% in the Main Hawaiian islands; and by 21% to 56% in American Samoa. PMID:25831196

Diet niches of major forage fish in Lake Michigan

USGS Publications Warehouse

Hunter, R. Douglas; Savino, J.F.; Ogilvie, L.M.; ,

2007-01-01

A large complex of coregonine species historically dominated the fish community of Lake Michigan. The current species complex is simplified with one remaining coregonine, bloater (Coregonus hoyi), deepwater sculpin (Myoxocephalus thompsoni), slimy sculpin (Cottus cognatus), and two dominant invaders, alewife (Alosa pseudoharengus) and rainbow smelt (Osmerus mordax). To better understand the diet relationships of the major offshore forage fishes now in Lake Michigan, diets of bloater, alewife, rainbow smelt, deepwater sculpin, and slimy sculpin were compared. The three sites, chosen to represent northern, central, and southern components of the lake, were sampled during spring, summer, and fall in 1994, and spring and fall in 1995. Forage fishes had diverse and variable diets, with niches differentiated by prey type or location. Diporeia hoyi, Mysis relicta, and zooplankton were the major diet items. The index of relative importance showed benthic (slimy and deepwater sculpins) and pelagic (alewife, rainbow smelt) feeding strategies with opportunistic bloaters incorporating both feeding strategies. Highest diet overlaps were between species of sculpin, and between large and small bloaters; both groups partitioned food by size. Though competition for food may be minimized by spatial segregation of potential competitors, the forage fish in Lake Michigan apparently partition food resources. Fishery management models incorporating food habits of pelagic forage fish would need to take into account diet variation associated with location and season. ?? 2007 E. Schweizerbart'sche Verlagsbuchhandlung.

Environmental contaminants and biomarker responses in fish from the Rio Grande and its U.S. tributaries: spatial and temporal trends.

PubMed

Schmitt, Christopher J; Hinck, Jo Ellen; Blazer, Vicki S; Denslow, Nancy D; Dethloff, Gail M; Bartish, Timothy M; Coyle, James J; Tillitt, Donald E

2005-11-01

We collected, examined, and analyzed 368 fish of seven species from 10 sites on rivers of the Rio Grande Basin (RGB) during late 1997 and early 1998 to document temporal and geographic trends in the concentrations of accumulative contaminants and to assess contaminant effects on the fish. Sites were located on the mainstem of the Rio Grande and on the Arroyo Colorado and Pecos River in Texas (TX), New Mexico (NM), and Colorado. Common carp (Cyprinus carpio) and largemouth bass (Micropterus salmoides) were the targeted species. Fish were examined in the field for internal and external visible gross lesions, selected organs were weighed to compute ponderal and organosomatic indices, and samples of tissues and fluids were obtained and preserved for analysis of fish health and reproductive biomarkers. Whole fish from each station were composited by species and gender and analyzed for organochlorine chemical residues and elemental contaminants using instrumental methods, and for 2,3,7,8-tetrachloro dibenzo-p-dioxin-like activity (TCDD-EQ) using the H4IIE rat hepatoma cell bioassay. Overall, fish from lower RGB stations contained greater concentrations of organochlorine pesticide residues and appeared to be less healthy than those from sites in the central and upper parts of the basin, as indicated by a general gradient of residue concentrations and biomarker responses. A minimal number of altered biomarkers and few or no elevated contaminant concentrations were noted in fish from the upper RGB. The exception was elevated concentrations [up to 0.46 microg/g wet-weight (ww)] of total mercury (Hg) in predatory species from the Rio Grande at Elephant Butte Reservoir, NM, a condition documented in previous studies. Arsenic (As) and selenium (Se) concentrations were greatest in fish from sites in the central RGB; Se concentrations in fish from the Pecos River at Red Bluff Lake, TX and from the Rio Grande at Langtry, TX and Amistad International Reservoir, TX exceeded published fish and wildlife toxicity thresholds. In the lower RGB, residues of p,p'-DDT metabolites (

Environmental contaminants and biomarker responses in fish from the Rio Grande and its U.S. tributaries: Spatial and temporal trends

USGS Publications Warehouse

Schmitt, C.J.; Hinck, J.E.; Blazer, V.S.; Denslow, N.D.; Dethloff, G.M.; Bartish, T.M.; Coyle, J.J.; Tillitt, D.E.

2005-01-01

We collected, examined, and analyzed 368 fish of seven species from 10 sites on rivers of the Rio Grande Basin (RGB) during late 1997 and early 1998 to document temporal and geographic trends in the concentrations of accumulative contaminants and to assess contaminant effects on the fish. Sites were located on the mainstem of the Rio Grande and on the Arroyo Colorado and Pecos River in Texas (TX), New Mexico (NM), and Colorado. Common carp (Cyprinus carpio) and largemouth bass (Micropterus salmoides) were the targeted species. Fish were examined in the field for internal and external visible gross lesions, selected organs were weighed to compute ponderal and organosomatic indices, and samples of tissues and fluids were obtained and preserved for analysis of fish health and reproductive biomarkers. Whole fish from each station were composited by species and gender and analyzed for organochlorine chemical residues and elemental contaminants using instrumental methods, and for 2,3,7,8-tetrachloro dibenzo-p-dioxin-like activity (TCDD-EQ) using the H4IIE rat hepatoma cell bioassay. Overall, fish from lower RGB stations contained greater concentrations of organochlorine pesticide residues and appeared to be less healthy than those from sites in the central and upper parts of the basin, as indicated by a general gradient of residue concentrations and biomarker responses. A minimal number of altered biomarkers and few or no elevated contaminant concentrations were noted in fish from the upper RGB. The exception was elevated concentrations [up to 0.46 ??g/g wet-weight (ww)] of total mercury (Hg) in predatory species from the Rio Grande at Elephant Butte Reservoir, NM, a condition documented in previous studies. Arsenic (As) and selenium (Se) concentrations were greatest in fish from sites in the central RGB; Se concentrations in fish from the Pecos River at Red Bluff Lake, TX and from the Rio Grande at Langtry, TX and Amistad International Reservoir, TX exceeded published fish and wildlife toxicity thresholds. In the lower RGB, residues of p,p???-DDT metabolites (???1.69 ??g/g ww), chlordane-related compounds (???0.21 ??g/g ww), dieldrin (???0.0.05 ??g/g ww), and toxaphene (???2.4 ??g/g ww) were detected in fish from most sites; maximum concentrations were in channel catfish (Ictalurus punctatus) from the Arroyo Colorado at Harlingen, TX. Concentrations of one or more residues exceeded toxicity thresholds for fish and wildlife in fish from this site and from the Rio Grande at Mission, TX and Brownsville, TX; however, concentrations were lower than those reported by previous studies. In addition, the proportional concentrations of p,p???-DDT at all sites were low, indicating weathered DDT rather than the influx of new material. Concentrations of total PCBs (<0.05 ??g/g ww) and TCDD-EQ (???6 pg/g ww) were comparatively low in all samples. Hepatic ethoxyresorufin O-deethylase (EROD) activity in some fish was elevated relative to reference rates at most sites, but was generally lower than previously reported activity in fish from heavily contaminated locations. The comparatively low PCB and TCDD-EQ concentrations together with elevated EROD activity may reflect exposure to polycyclic aromatic hydrocarbons. Reproductive biomarkers were consistent with chronic contaminant exposure at lower RGB sites; comparatively large percentages of intersex male largemouth bass, relatively low gonadosomatic indices, and elevated plasma vitellogenin concentrations in male fish were noted at three of the four stations. Large percentages of atretic eggs were also observed in the ovaries of female common carp from the Rio Grande at Brownsville, TX. Although many of the conditions noted may have other causes in addition to contaminant exposure, the biomarker results for the lower RGB sites are consistent with subtle responses of fish to contaminants, an interpretation supported by the chemical data of this and other investigations.

A Sediment Transport Based Geomorphic Analysis of the Skykomish River Braided Reach to Identify "Restoration" Opportunities

NASA Astrophysics Data System (ADS)

Devries, P.; Aldrich, R.; Brunzell, S.; Purser, M.

2004-12-01

A study is underway to assess the driving sediment transport and hydraulic processes influencing channel changes in a braided reach of the Skykomish River, Washington. The reach is located below a steeper, confined section of the river and has likely been geomorphically active since the last glaciation. Bankfull widths range between roughly 100-350 m within, and drainage area is 1,500 km2 above, the study reach. Analyses have been conducted at the reach scale, and include development of a sediment transport model, historical photograph and survey overlays, and an accounting of where sediment deposition, channel shifts and avulsions, and side channel connection are most and least likely to occur over reasonable design life spans (e.g., between 10 and 50 years). The ultimate goal of the analysis is to identify suitable locations for projects that will enhance, restore, or protect fish habitat as well as protect infrastructure, while considering constraints posed by channel hydraulic, sediment transport/deposition, and stability characteristics. Our strategy is to determine what types of projects are best suited for different locations in the reach based on the analysis results. The results can then be used to prioritize and estimate costs for project alternatives.

Shipboard fisheries management terminals

NASA Technical Reports Server (NTRS)

Nagler, R. G.; Sager, E. V.

1980-01-01

The needs of the National Marine Fisheries Service (NMGS), National Weather Service, and the U.S. Coast Guard for locational, biological, and environmental data were assessed. The fisheries conservation zones and the yellowfin tuna jurisdiction of the NMFS operates observer programs on foreign and domestic fishing vessels. Data input terminal and data transfer and processing technology are reviewed to establish available capability. A matrix of implementation options is generated to identify the benefits of each option, and preliminary cost estimates are made. Recommendations are made for incremental application of available off the shelf hardware to obtain improved performance and benefits within a well bounded cost. Terminal recommendations are made for three interdependent shipboard units emphasizing: (1) the determination of location and fishing activity; (2) hand held data inputting and formatting in the fishing work areas; and (3) data manipulation, merging, and editing.

Heavy metals in fish from the Aleutians: Interspecific and locational differences

DOE Office of Scientific and Technical Information (OSTI.GOV)

Burger, Joanna, E-mail: burger@biology.rutgers.edu; Environmental and Occupational Health Sciences Institute, Rutgers University, Piscataway, NJ; Consortium for Risk Evaluation with Stakeholder Participation, Vanderbilt University, Nashville, TN 37235

The objectives of this study were to examine levels of arsenic, cadmium, lead, mercury and selenium in edible tissue of seven species of marine fish collected from several Aleutian islands (in 2004) to determine: (1) interspecific differences, (2) locational differences (among Aleutian Islands), (3) size-related differences in any metal levels within a species, and (4) potential risk to the fish or to predators on the fish, including humans. We also compared metals levels to those of three other fish species previously examined in detail, as well as examining metals in the edible tissue of octopus (Octopus dofleini). Octopus did notmore » have the highest levels of any metal. There were significant interspecific differences in all metal levels among the fish species, although the differences were less than an order of magnitude, except for arsenic (mean of 19,500 ppb in Flathead sole, Hippoglossoides elassodon). Significant intraisland variation occurred among the four sites on Amchitka, but there was not a consistent pattern. There were significant interisland differences for some metals and species. Mercury levels increased significantly with size for several species; lead increased significantly for only one fish species; and cadmium and selenium decreased significantly with size for halibut (Hippoglossus stenolepis). The Alaskan Department of Health and Social Services supports unrestricted consumption of most Alaskan fish species for all people, including pregnant women. Most mean metal concentrations were well below the levels known to adversely affect the fish themselves, or predators that consume them (including humans), except for mercury in three fish species (mean levels just below 0.3 ppm), and arsenic in two fish species. However, even at low mercury levels, people who consume fish almost daily will exceed guideline values from the Centers for Disease Control and the Environmental Protection Agency. - Highlights: • Cadmium, lead, mercury and selenium levels differed among 10 fish species from the Aleutians. • Mean Arsenic was as high as 19,500 ppb (flathead sole, Hippoglossoides elassodon). • Mercury levels increased significantly with fish size for several species. • Metal levels were generally below adverse effects levels for fish and their predators. • Mercury and arsenic might pose a risk to human consumers, and require further examination.« less

Isolation by distance and vicariance drive genetic structure of a coral reef fish in the Pacific Ocean.

PubMed

Planes, S; Fauvelot, C

2002-02-01

We studied the genetic diversity of a coral reef fish species to investigate the origin of the differentiation. A total of 727 Acanthurus triostegus collected from 15 locations throughout the Pacific were analyzed for 20 polymorphic loci. The genetic structure showed limited internal disequilibrium within each population; 3.7% of the loci showed significant Hardy-Weinberg disequilibrium, mostly associated with Adh*, and we subsequently removed this locus from further analysis of geographic pattern. The genetic structure of A. triostegus throughout the tropical Pacific Ocean revealed a strong geographic pattern. Overall, there was significant population differentiation (multilocus F(ST) = 0.199), which was geographically structured according to bootstraps of neighbor-joining analysis on Nei's unbiased genetic distances and AMOVA analysis. The genetic structure revealed five geographic groups in the Pacific Ocean: western Pacific (Guam, Philippines, Palau, and Great Barrier Reef); central Pacific (Solomons, New Caledonia, and Fiji); and three groups made up of the eastern populations, namely Hawaiian Archipelago (north), Marquesas (equatorial), and southern French Polynesia (south) that incorporates Clipperton Island located in the northeastern Pacific. In addition, heterozygosity values were found to be geographically structured with higher values grouped within Polynesian and Clipperton populations, which exhibited lower population size. Finally, the genetic differentiation (F(ST)) was significantly correlated with geographic distance when populations from the Hawaiian and Marquesas archipelagos were separated from all the other locations. These results show that patterns of differentiation vary within the same species according to the spatial scale, with one group probably issued from vicariance, whereas the other followed a pattern of isolation by distance. The geographic pattern for A. triostegus emphasizes the diversity of the evolutionary processes that lead to the present genetic structure with some being more influential in certain areas or according to a particular spatial scale.

Large-Scale Assessment of Mediterranean Marine Protected Areas Effects on Fish Assemblages

PubMed Central

Guidetti, Paolo; Baiata, Pasquale; Ballesteros, Enric; Di Franco, Antonio; Hereu, Bernat; Macpherson, Enrique; Micheli, Fiorenza; Pais, Antonio; Panzalis, Pieraugusto; Rosenberg, Andrew A.; Zabala, Mikel; Sala, Enric

2014-01-01

Marine protected areas (MPAs) were acknowledged globally as effective tools to mitigate the threats to oceans caused by fishing. Several studies assessed the effectiveness of individual MPAs in protecting fish assemblages, but regional assessments of multiple MPAs are scarce. Moreover, empirical evidence on the role of MPAs in contrasting the propagation of non-indigenous-species (NIS) and thermophilic species (ThS) is missing. We simultaneously investigated here the role of MPAs in reversing the effects of overfishing and in limiting the spread of NIS and ThS. The Mediterranean Sea was selected as study area as it is a region where 1) MPAs are numerous, 2) fishing has affected species and ecosystems, and 3) the arrival of NIS and the northward expansion of ThS took place. Fish surveys were done in well-enforced no-take MPAs (HP), partially-protected MPAs (IP) and fished areas (F) at 30 locations across the Mediterranean. Significantly higher fish biomass was found in HP compared to IP MPAs and F. Along a recovery trajectory from F to HP MPAs, IP were similar to F, showing that just well enforced MPAs triggers an effective recovery. Within HP MPAs, trophic structure of fish assemblages resembled a top-heavy biomass pyramid. Although the functional structure of fish assemblages was consistent among HP MPAs, species driving the recovery in HP MPAs differed among locations: this suggests that the recovery trajectories in HP MPAs are likely to be functionally similar (i.e., represented by predictable changes in trophic groups, especially fish predators), but the specific composition of the resulting assemblages may depend on local conditions. Our study did not show any effect of MPAs on NIS and ThS. These results may help provide more robust expectations, at proper regional scale, about the effects of new MPAs that may be established in the Mediterranean Sea and other ecoregions worldwide. PMID:24740479

Large-scale assessment of Mediterranean marine protected areas effects on fish assemblages.

PubMed

Guidetti, Paolo; Baiata, Pasquale; Ballesteros, Enric; Di Franco, Antonio; Hereu, Bernat; Macpherson, Enrique; Micheli, Fiorenza; Pais, Antonio; Panzalis, Pieraugusto; Rosenberg, Andrew A; Zabala, Mikel; Sala, Enric

2014-01-01

Marine protected areas (MPAs) were acknowledged globally as effective tools to mitigate the threats to oceans caused by fishing. Several studies assessed the effectiveness of individual MPAs in protecting fish assemblages, but regional assessments of multiple MPAs are scarce. Moreover, empirical evidence on the role of MPAs in contrasting the propagation of non-indigenous-species (NIS) and thermophilic species (ThS) is missing. We simultaneously investigated here the role of MPAs in reversing the effects of overfishing and in limiting the spread of NIS and ThS. The Mediterranean Sea was selected as study area as it is a region where 1) MPAs are numerous, 2) fishing has affected species and ecosystems, and 3) the arrival of NIS and the northward expansion of ThS took place. Fish surveys were done in well-enforced no-take MPAs (HP), partially-protected MPAs (IP) and fished areas (F) at 30 locations across the Mediterranean. Significantly higher fish biomass was found in HP compared to IP MPAs and F. Along a recovery trajectory from F to HP MPAs, IP were similar to F, showing that just well enforced MPAs triggers an effective recovery. Within HP MPAs, trophic structure of fish assemblages resembled a top-heavy biomass pyramid. Although the functional structure of fish assemblages was consistent among HP MPAs, species driving the recovery in HP MPAs differed among locations: this suggests that the recovery trajectories in HP MPAs are likely to be functionally similar (i.e., represented by predictable changes in trophic groups, especially fish predators), but the specific composition of the resulting assemblages may depend on local conditions. Our study did not show any effect of MPAs on NIS and ThS. These results may help provide more robust expectations, at proper regional scale, about the effects of new MPAs that may be established in the Mediterranean Sea and other ecoregions worldwide.

[Advances in the study of neuroendocrinological regulation of kisspeptin in fish reproduction].

PubMed

Zhuo, Qi

2013-10-01

Kisspeptin, a key factor in the neuroendocrinological regulation of animal reproduction, is a peptide product encoded by kiss genes, which act as the natural ligand of GPR54. Over the last decade, multiple functional molecular forms of kisspeptin have been found in vertebrate species. In fish, the major molecular structural form is kisspeptin-10. The kisspeptin/GPR54 system has multiple important functions in reproduction. This review provides an overview of our current knowledge on kisspeptin and its role in regulating fish reproductive, including the distribution and location of kisspeptin neurons in the brain, the molecular polymorphism of fish kisspeptin, functional diversity, the molecular mechanism of fish reproductive regulation, and the molecular evolution of kisspeptin as well as the co-regulation of fish reproduction by kisspeptin and other functional molecules. Perspectives on the future of kisspeptin regulation in fish reproduction are also highlighted.

Pressure-specific and multiple pressure response of fish assemblages in European running waters☆

PubMed Central

Schinegger, Rafaela; Trautwein, Clemens; Schmutz, Stefan

2013-01-01

We classified homogenous river types across Europe and searched for fish metrics qualified to show responses to specific pressures (hydromorphological pressures or water quality pressures) vs. multiple pressures in these river types. We analysed fish taxa lists from 3105 sites in 16 ecoregions and 14 countries. Sites were pre-classified for 15 selected pressures to separate unimpacted from impacted sites. Hierarchical cluster analysis was used to split unimpacted sites into four homogenous river types based on species composition and geographical location. Classification trees were employed to predict associated river types for impacted sites with four environmental variables. We defined a set of 129 candidate fish metrics to select the best reacting metrics for each river type. The candidate metrics represented tolerances/intolerances of species associated with six metric types: habitat, migration, water quality sensitivity, reproduction, trophic level and biodiversity. The results showed that 17 uncorrelated metrics reacted to pressures in the four river types. Metrics responded specifically to water quality pressures and hydromorphological pressures in three river types and to multiple pressures in all river types. Four metrics associated with water quality sensitivity showed a significant reaction in up to three river types, whereas 13 metrics were specific to individual river types. Our results contribute to the better understanding of fish assemblage response to human pressures at a pan-European scale. The results are especially important for European river management and restoration, as it is necessary to uncover underlying processes and effects of human pressures on aquatic communities. PMID:24003262

Trophic connections in Lake Superior Part I: the offshore fish community

USGS Publications Warehouse

Gamble, A.E.; Hrabik, T.R.; Stockwell, J.D.; Yule, D.L.

2011-01-01

Detailed diet linkages within the offshore (> 80 m bathymetric depth) food web of Lake Superior are currently not well identified. We used analyses of fish stomach contents to create an empirically based food web model of the Lake Superior offshore fish community. Stomachs were collected seasonally (spring, summer, and fall) from nine offshore locations in 2005, using bottom and midwater trawls. In total, 2643 stomachs representing 12 fish species were examined. The predominant fish species collected were deepwater sculpin (Myoxocephalus thompsonii), siscowet (Salvelinus namaycush siscowet), kiyi (Coregonus kiyi), and cisco (Coregonus artedi). Mysis diluviana was the most common prey item, indicating that changes in Mysis abundance could have a profound impact on the entire offshore food web. Mysis was the primary diet item of deepwater sculpin (≥ 53% by mass) and kiyi (≥ 96% by mass) regardless of depth or season. The invasive Bythotrephes was an important diet component of the pelagic cisco in summer and fall. Deepwater sculpin were the primary diet item of siscowet (≥ 52% by mass), with coregonines appearing in the diet of larger (> 400 mm) siscowet. Non-metric multidimensional scaling analysis indicated that there were no statistically significant seasonal or site-specific differences in diets of deepwater sculpin, cisco, or kiyi. Site was the primary structuring factor in siscowet diets. Generally, in Lake Superior, the diet items of the dominant offshore species did not appear to be in danger from those types of major ecological shifts occurring in the lower Laurentian Great Lakes.

An Analysis of Fish Communities on Structured Habitat in the Northwestern Gulf of Mexico: Potential Impacts of "Rigs-to-Reefs" Programs and a Comparison with Natural Banks

NASA Astrophysics Data System (ADS)

Wetz, J. J.; Ajemian, M. J.; Streich, M.; Stunz, G. W.

2016-02-01

Artificial habitat in the northwestern Gulf of Mexico is predominantly comprised of both active and reefed oil and gas platforms. In the last few decades, Texas alone has converted over 140 decommissioned oil and gas platforms into permitted artificial reefs. Despite the predominance of this habitat type, the associated fish communities remain poorly studied and few comparisons with natural habitat have been done. Using remotely operated vehicles in 2012 and 2013, we documented fish assemblages surrounding 15 artificial structures and several natural banks located on the Texas shelf. Artificial sites were variable in depth (30-84 m), number of structures, and vertical relief. Both structure type and relief influenced species richness and community structure at these sites. However, bottom depth was most influential with a shift in community composition and high diversity observed at approximately 60 m depth. In this same region, drowned coralgal reefs (the South Texas Banks) provide natural hard substrate with relief up to 20 m. Comparisons between these natural habitats and artificial reefs with similar depths and relief clearly demonstrate fish community differences, perhaps indicating differences in habitat function. To attain species-specific management goals, reefing programs should carefully consider the ambient environmental conditions (i.e., depth) and proximity of natural habitats, as these will most certainly affect the fish assemblage and characteristics of exploited fisheries species.

[Molecular genetic characterization of the Far Eastern trematode Skrjabino lecithum spasskii Belous, 1954 (Digenea: Haploporidae)), a parasite of mullets].

PubMed

Atopkin, D M; Nikitenko, A Yu; Ngo, H D; Ha, N V; Tang, N V

2015-01-01

Intraspecific genetic differentiation of the trematode Skrjabinolecithum spasskii and its phylogenetic relationships with other species of the family Haploporidae were studied by comparing the nucleotide sequences of a part of the 28S rRNA gene and the ITS1-5.8S-ITS2 rDNA region. Trematodes were isolated from so-iuy mullet Liza haematocheila fishes collected in rivers of Primorye and flathead grey mullet Mugil cephalus fishes collected in water bodies of Vietnam (27 fishes in total). A phylogenetic analysis showed that S. spasskii is close to species of the genus Capitimitta of the subfamily Waretrematinae. By intraspecific variation of rDNA sequences, trematodes were divided into three groups with tree different genotypes, which had fixed nucleotide substitutions. Genotype I was found in trematodes from fishes collected in Primorye. Genotype II was detected in trematodes from M. cephalus fishes collected in the Tonkin Bay, Cat Ba Island, Vietnam. Genotype III was found in five trematodes from L. haematocheila collected in the Kievka River, Primorye. The genetic distances between genotypes I and III from Primorye were 0.4 and 0.65% by 28S and ITS rDNA sequences, respectively. The lowest genetic distances were observed between genotypes II (Vietnam) and III (Primorye), 0.1 and 0.33% by 28S and ITS rDNA sequences, respectively. Possible causes of genetic differentiation of S. spasskii from different geographic locations and different definitive host species are discussed.

Identification of olfactory receptor genes in the Japanese grenadier anchovy Coilia nasus.

PubMed

Zhu, Guoli; Wang, Liangjiang; Tang, Wenqiao; Wang, Xiaomei; Wang, Cong

2017-01-01

Olfaction is essential for fish to detect odorant elements in the environment and plays a critical role in navigating, locating food and detecting predators. Olfactory function is produced by the olfactory transduction pathway and is activated by olfactory receptors (ORs) through the binding of odorant elements. Recently, four types of olfactory receptors have been identified in vertebrate olfactory epithelium, including main odorant receptors (MORs), vomeronasal type receptors (VRs), trace-amine associated receptors (TAARs) and formyl peptide receptors (FPRs). It has been hypothesized that migratory fish, which have the ability to perform spawning migration, use olfactory cues to return to natal rivers. Therefore, obtaining OR genes from migratory fish will provide a resource for the study of molecular mechanisms that underlie fish spawning migration behaviors. Previous studies of OR genes have mainly focused on genomic data, however little information has been gained at the transcript level. In this study, we identified the OR genes of an economically important commercial fish Coilia nasus through searching for olfactory epithelium transcriptomes. A total of 142 candidate MOR, 52 V2R/OlfC, 32 TAAR and two FPR putative genes were identified. In addition, through genomic analysis we identified several MOR genes containing introns, which is unusual for vertebrate MOR genes. The transcriptome-scale mining strategy proved to be fruitful in identifying large sets of OR genes from species whose genome information is unavailable. Our findings lay the foundation for further research into the possible molecular mechanisms underlying the spawning migration behavior in C. nasus .

Tourism as a driver of conflicts and changes in fisheries value chains in Marine Protected Areas.

PubMed

Lopes, P F M; Mendes, L; Fonseca, V; Villasante, S

2017-09-15

Although critical tools for protecting ocean habitats, Marine Protected Areas (MPAs) are sometimes challenged for social impacts and conflicts they may generate. Some conflicts have an economic base, which, once understood, can be used to resolve associated socioenvironmental problems. We addressed how the fish trade in an MPA that combines no-take zones and tourist or resident zones creates incentives for increased fisheries. We performed a value chain analysis following the fish supply and trade through interviews that assessed consumer demand and preference. The results showed a simple and closed value chain driven by tourism (70% of the consumption). Both tourists and local consumers preferred high trophic level species (predators), but the former preferred large pelagics (tuna and dolphinfish) and the latter preferred reef species (barracuda and snapper). Pelagic predators are caught with fresh sardines, which are sometimes located only in the no-take zone. Pelagic species are mainly served as fillet, and the leftover fish parts end up as waste, an issue that, if properly addressed, can help reduce fishing pressure. Whereas some of the target species may be sustainable (e.g., dolphinfish), others are more vulnerable (e.g., wahoo) and should not be intensively fished. We advise setting stricter limits to the number of tourists visiting MPAs, according to their own capacity and peculiarities, in order to avoid conflicts with conservations goals through incentives for increased resource use. Copyright © 2017 Elsevier Ltd. All rights reserved.

Evaluation of stream flow effects on smolt survival in the Yakima River Basin, Washington, 2012-2014

USGS Publications Warehouse

Courter, Ian; Garrison, Tommy; Kock, Tobias J.; Perry, Russell W.

2015-01-01

The influence of stream flow on survival of emigrating juvenile (smolts) Pacific salmon Oncorhynchus spp. and steelhead trout O. mykiss is of key management interest. However, few studies have quantified flow effects on smolt migration survival, and available information does not indicate a consistent flow-survival relationship within the typical range of flows under management control. It is hypothesized that smolt migration and dam passage survival are positively correlated with stream flow because higher flows increase migration rates, potentially reducing exposure to predation, and reduce delays in reservoirs. However, available empirical data are somewhat equivocal concerning the influence of flow on smolt survival and the underlying mechanisms driving this relationship. Stream flow effects on survival of emigrating anadromous salmonids in the Yakima Basin have concerned water users and fisheries managers for over 20 years, and previous studies do not provide sufficient information at the resolution necessary to inform water operations, which typically occur on a small spatiotemporal scale. Using a series of controlled flow releases from 2012-2014, combined with radio telemetry, we quantified the relationship between flow and smolt survival from Roza Dam 208 km downstream to the Yakima River mouth, as well as for specific routes of passage at Roza Dam. A novel multistate mark-recapture model accounted for weekly variation in flow conditions experienced by radio-tagged fish. Groups of fish were captured and radio-tagged at Roza Dam and released at two locations, upstream at the Big Pines Campground (river kilometer [rkm] 211) and downstream in the Roza Dam tailrace (rkm 208). A total of 904 hatchery-origin yearling Chinook salmon O. tshawytscha were captured in the Roza Dam fish bypass, radio-tagged and released upstream of Roza Dam. Two hundred thirty seven fish were released in the tailrace of Roza Dam. Fish released in the tailrace of Roza Dam were tagged concurrently with fish released upstream of the dam using identical tagging methods. Tagging and release events were conducted to target a range of flow conditions indicative of flows observed during the typical migration period (March-May) for juvenile spring Chinook salmon in the Yakima River. Three, five and four separate upstream releases were conducted in 2012, 2013, and 2014 respectively, and at least 43 fish were released alive on each occasion. The release sample sizes in 2014 were much larger (~130) compared to previous years for the purpose of increasing precision of survival estimates across the range of flows tested. Migration movements of radio-tagged spring Chinook salmon smolts were monitored with an array of telemetry receiver stations (fixed sites) that extended 208 rkm downstream from the forebay of Roza Dam to the mouth of the Yakima River. Fixed monitoring sites included the forebay of Roza Dam (rkm 208), the tailrace of Roza Dam (rkm 207.9), the mouth of Wenas Creek (rkm 199.2), the mouth of the Naches River (two sites, rkm 189.4), Sunnyside Dam (two sites, rkm 169.1), Prosser Dam (rkm 77.2), and the mouth of the Yakima River (two sites, rkm2 3). This array segregated the study area into four discrete reaches in which survival of tagged fish was estimated. Aerial and underwater antennas were also used to monitor tagged fish at Roza Dam. Aerial antennas were located in the forebay, on the East gate, on the West gate, and in the tailrace of Roza Dam. Underwater antennas were located in the fish bypass, upstream of the East gate, and upstream of the West gate to collect route-specific passage data for tagged fish. Additional years of data collection and analysis could alter or improve our understanding of the influence of flow and other environmental factors on smolt survival in the Yakima River. Nevertheless, during 2012-2014, yearling hatchery Chinook salmon smolt emigration survival was significantly associated with stream flow in the

Identifying Lagrangian fronts with favourable fishery conditions

NASA Astrophysics Data System (ADS)

Prants, S. V.; Budyansky, M. V.; Uleysky, M. Yu.

2014-08-01

Lagrangian fronts (LFs) in the ocean are defined as boundaries between surface waters with strongly different Lagrangian properties. They can be accurately detected in a given velocity field by computing synoptic maps for displacements of synthetic tracers and other Lagrangian indicators. We use Pacific saury catch and location data for a number of commercial fishery seasons in the region of the northwest Pacific with one of the richest fishery in the world. It is shown statistically that the saury fishing grounds with maximal catches are not randomly distributed over the region but located mainly along the sharp LFs where productive cold waters of the Oyashio Current, warmer waters of the southern branch of the Soya Current, and waters of warm-core Kuroshio rings converge. Computation of those fronts in altimetric geostrophic velocity fields both in the years with the First and Second Oyashio Intrusions shows that in spite of different oceanographic conditions LF locations may serve as good indicators of potential fishing grounds. Possible biophysical reasons for saury aggregation near sharp LFs are discussed. We propose a mechanism for effective export of nutrient rich waters based on stretching of material lines in the vicinity of hyperbolic objects in the ocean. The developed method, based on identifying LFs in any velocity fields, is quite general and may be applied to find potential fishing grounds for the other pelagic fish.

Tumor prevalence and biomarkers of exposure in brown bullhead (Ameiurus nebulosus) from Back River, Furnace Creek, and Tuckahoe River, Maryland.

PubMed

Pinkney, A E; Harshbarger, J C; May, E B; Melancon, M J

2004-05-01

Brown bullheads (Ameiurus nebulosus) were collected from 2 locations near Baltimore, Maryland, Back River and Furnace Creek, and 1 (reference) location, Tuckahoe River, to compare the prevalence of tumors (liver and skin) and visible skin lesions (fin erosion and abnormal barbels). Cytochrome P450 activity measured as ethoxyresorufin-O-deethylase, biliary PAH-like fluorescent metabolites, and fillet contaminant concentrations were determined as indicators of exposure in a randomly selected subset of the fish. There were no significant differences in liver tumor prevalence: Back River = 8% (4/50), Furnace Creek = 0% (0/50), and Tuckahoe River = 2.6% (1/39; p = 0.20, extension of Fisher's exact test). Skin tumor prevalence was as follows: Furnace Creek = 12% (6/50), Back River = 8% (4/50), and Tuckahoe River = 0% (0/39; p = 0.063). In the Back River fish, there was a 40% (20/50) prevalence of fin erosion and a 28% (14/50) prevalence of abnormal (shortened, clubbed, or missing) barbels. Fin erosion was not observed in the other collections, and only 10% (5/50) of the Furnace Creek fish had abnormal barbels (p < 0.001 for both lesions). There were statistically significant differences in mean EROD activity, with levels in Furnace Creek and Back River fish approximately twice that found in Tuckahoe River fish. There were also significant differences in mean benzo(a)pyrene-like bile metabolite concentrations: the lowest mean was in the Tuckahoe River fish, 8 times higher in Furnace Creek fish, and 13 times higher in Back River fish. Of the 3 groups, the Back River bullheads appear to be most adversely affected by contaminant exposure because they had the highest prevalence of liver tumors, fin erosion, and abnormal barbels.

Tumor prevalence and biomarkers of exposure in brown bullhead (Ameiurus nebulosus) from Back River, Furnace Creek, and Tuckahoe River, Maryland

USGS Publications Warehouse

Pinkney, A.E.; Harshbarger, J.C.; May, E.B.; Melancon, M.J.

2004-01-01

Brown bullheads (Ameiurus nebulosus) were collected from 2 locations near Baltimore, Maryland, Back River and Furnace Creek, and 1 (reference) location, Tuckahoe River, to compare the prevalence of tumors (liver and skin) and visible skin lesions (fin erosion and abnormal barbels). Cytochrome P450 activity measured as ethoxyresorufin-O-deethylase, biliary PAH-like fluorescent metabolites, and fillet contaminant concentrations were determined as indicators of exposure in a randomly selected subset of the fish. There were no significant differences in liver tumor prevalence: Back River = 8% (4/50), Furnace Creek = 0% (0/50), and Tuckahoe River = 2.6% (1/39; p = 0.20, extension of Fishers exact test). Skin tumor prevalence was as follows: Furnace Creek = 12% (6/50), Back River = 8% (4/50), and Tuckahoe River = 0% (0/39; p = 0.063). In the Back River fish, there was a 40% (20/50) prevalence of fin erosion and a 28% (14/50) prevalence of abnormal (shortened, clubbed, or missing) barbels. Fin erosion was not observed in the other collections, and only 10% (5/50) of the Furnace Creek fish had abnormal barbels (p < 0.001 for both lesions). There were statistically significant differences in mean EROD activity, with levels in Furnace Creek and Back River fish approximately twice that found in Tuckahoe River fish. There were also significant differences in mean benzo(a)pyrene-like bile metabolite concentrations: the lowest mean was in the Tuckahoe River fish, 8 times higher in Furnace Creek fish, and 13 times higher in Back River fish. Of the 3 groups, the Back River bullheads appear to be most adversely affected by contaminant exposure because they had the highest prevalence of liver tumors, fin erosion, and abnormal barbels.

Relation of contaminants to fish intersex in riverine sport fishes.

PubMed

Grieshaber, Casey A; Penland, Tiffany N; Kwak, Thomas J; Cope, W Gregory; Heise, Ryan J; Law, J Mac; Shea, Damian; Aday, D Derek; Rice, James A; Kullman, Seth W

2018-06-20

Endocrine active compounds (EACs) are pollutants that have been recognized as an emerging and widespread threat to aquatic ecosystems globally. Intersex, the presence of female germ cells within a predominantly male gonad, is considered a biomarker of endocrine disruption caused by EACs. We measured a suite of EACs and assessed their associated impacts on fish intersex occurrence and severity in a large, regulated river system in North Carolina and South Carolina, USA. Our specific objective was to determine the relationship of contaminants in water, sediment, and fish tissue with the occurrence and severity of the intersex condition in wild, adult black bass (Micropterus), sunfish (Lepomis), and catfish (Ictaluridae) species at 11 sites located on the Yadkin-Pee Dee River. Polycyclic aromatic hydrocarbons (PAHs), ethinylestradiol (EE2), and heavy metals were the most prevalent contaminants that exceeded effect levels for the protection of aquatic organisms. Fish intersex condition was most frequently observed and most severe in black basses and was less frequently detected and less severe in sunfishes and catfishes. The occurrence of the intersex condition in fish showed site-related effects, rather than increasing longitudinal trends from upstream to downstream. Mean black bass and catfish tissue contaminant concentrations were higher than that of sunfish, likely because of the latter's lower trophic position in the food web. Principal component analysis identified waterborne PAHs as the most correlated environmental contaminant with intersex occurrence and severity in black bass and sunfish. As indicated by the intersex condition, EACs have adverse but often variable effects on the health of wild sport fishes in this river, likely due to fluctuations in EAC inputs and the dynamic nature of the riverine system. These findings enhance the understanding of the relationship between contaminants and fish health and provide information to guide ecologically comprehensive conservation and management decisions. Copyright © 2018 Elsevier B.V. All rights reserved.

What a difference a bay makes: natural variation in dietary resources mediates growth in a recently settled herbivorous fish

NASA Astrophysics Data System (ADS)

Priest, Mark A.; Halford, Andrew R.; Clements, Kendall D.; Douglas, Emily; Abellana, Sheena L.; McIlwain, Jennifer L.

2016-12-01

Processes acting during the early stages of coral reef fish life cycles have a disproportionate influence on their adult abundance and community structure. Higher growth rates, for example, confer a major fitness advantage in larval and juvenile fishes, with larger fish undergoing significantly less mortality. The role of dietary resources in the size-structuring process has not been well validated, especially at the early post-settlement phase, where competition and predation are seen as preeminent drivers of juvenile fish assemblage structure. Here, we report on a size differential of 10-20% between recently settled Siganus spinus rabbitfish recruits from different bays around the Pacific island of Guam. This difference was maintained across multiple recruitment events within and between years. After confirming the validity of our observations through otolith increment analysis, subsequent investigation into the drivers of this variation revealed significant differences in the structure of algal assemblages between bays, congruent with the observed differences in size of the recently settled fish. Gut analyses showed a greater presence of algal types with higher levels of nitrogen and phosphorus in the stomachs of fish from Tanguisson, the bay with the largest observed recruits. To ensure this mechanism was one of causation and not correlation, we conducted a fully factorial experiment in which S. spinus recruits sampled from different bays were reared on all combinations of algal diets representative of the different bays. Recruits on the `Tanguisson' diet grew faster than recruits on other diets, regardless of their origin. We propose that the greater availability of high-quality dietary resources at this location is likely conferring benefits that impact on the population-level dynamics of this species. The spatial and temporal extent of this process clearly implicates food as a limiting resource, capable of mediating fish population dynamics at multiple spatial scales and ontogenetic phases.

Environmental DNA sampling protocol - filtering water to capture DNA from aquatic organisms

USGS Publications Warehouse

Laramie, Matthew B.; Pilliod, David S.; Goldberg, Caren S.; Strickler, Katherine M.

2015-09-29

Environmental DNA (eDNA) analysis is an effective method of determining the presence of aquatic organisms such as fish, amphibians, and other taxa. This publication is meant to guide researchers and managers in the collection, concentration, and preservation of eDNA samples from lentic and lotic systems. A sampling workflow diagram and three sampling protocols are included as well as a list of suggested supplies. Protocols include filter and pump assembly using: (1) a hand-driven vacuum pump, ideal for sample collection in remote sampling locations where no electricity is available and when equipment weight is a primary concern; (2) a peristaltic pump powered by a rechargeable battery-operated driver/drill, suitable for remote sampling locations when weight consideration is less of a concern; (3) a 120-volt alternating current (AC) powered peristaltic pump suitable for any location where 120-volt AC power is accessible, or for roadside sampling locations. Images and detailed descriptions are provided for each step in the sampling and preservation process.

MitoFish and MiFish Pipeline: A Mitochondrial Genome Database of Fish with an Analysis Pipeline for Environmental DNA Metabarcoding.

PubMed

Sato, Yukuto; Miya, Masaki; Fukunaga, Tsukasa; Sado, Tetsuya; Iwasaki, Wataru

2018-06-01

Fish mitochondrial genome (mitogenome) data form a fundamental basis for revealing vertebrate evolution and hydrosphere ecology. Here, we report recent functional updates of MitoFish, which is a database of fish mitogenomes with a precise annotation pipeline MitoAnnotator. Most importantly, we describe implementation of MiFish pipeline for metabarcoding analysis of fish mitochondrial environmental DNA, which is a fast-emerging and powerful technology in fish studies. MitoFish, MitoAnnotator, and MiFish pipeline constitute a key platform for studies of fish evolution, ecology, and conservation, and are freely available at http://mitofish.aori.u-tokyo.ac.jp/ (last accessed April 7th, 2018).

Ocean zoning for conservation, fisheries and marine renewable energy: assessing trade-offs and co-location opportunities.

PubMed

Yates, Katherine L; Schoeman, David S; Klein, Carissa J

2015-04-01

Oceans, particularly coastal areas, are getting busier and within this increasingly human-dominated seascape, marine biodiversity continues to decline. Attempts to maintain and restore marine biodiversity are becoming more spatial, principally through the designation of marine protected areas (MPAs). MPAs compete for space with other uses, and the emergence of new industries, such as marine renewable energy generation, will increase competition for space. Decision makers require guidance on how to zone the ocean to conserve biodiversity, mitigate conflict and accommodate multiple uses. Here we used empirical data and freely available planning software to identified priority areas for multiple ocean zones, which incorporate goals for biodiversity conservation, two types of renewable energy, and three types of fishing. We developed an approached to evaluate trade-offs between industries and we investigated the impacts of co-locating some fishing activities within renewable energy sites. We observed non-linear trade-offs between industries. We also found that different subsectors within those industries experienced very different trade-off curves. Incorporating co-location resulted in significant reductions in cost to the fishing industry, including fisheries that were not co-located. Co-location also altered the optimal location of renewable energy zones with planning solutions. Our findings have broad implications for ocean zoning and marine spatial planning. In particular, they highlight the need to include industry subsectors when assessing trade-offs and they stress the importance of considering co-location opportunities from the outset. Our research reinforces the need for multi-industry ocean-zoning and demonstrates how it can be undertaken within the framework of strategic conservation planning. Copyright © 2015 Elsevier Ltd. All rights reserved.

USING REGIONAL EXPOSURE CRITERIA AND UPSTREAM REFERENCE DATA TO CHARACTERIZE SPATIAL AND TEMPORAL EXPOSURES TO CHEMICAL CONTAMINANTS

EPA Science Inventory

Analyses of biomarkers in fish were used to evaluate exposures among locations and across time. Two types of references were used for comparison, an upstream reference sample remote from known point sources and regional exposure criteria derived from a baseline of fish from refer...

76 FR 80343 - Gulf of Mexico Fishery Management Council; Public Meeting

Federal Register 2010, 2011, 2012, 2013, 2014

2011-12-23

... 35 to the Reef Fish Fishery Management Plan and Amendment 11 to the Spiny Lobster Fishery Management... Fish) and Amendment 11 (Spiny Lobster) will be held at nine locations throughout the Gulf of Mexico and... looking at adding trip limits and potentially removing the fixed closed season. Spiny Lobster Amendment 11...

Prioritization of contaminants of emerging concern in wastewater treatment plant discharges using chemical: Gene interactions in caged fish

EPA Science Inventory

We examined whether contaminants present in surface waters could be prioritized for further assessment by linking the presence of specific chemicals to gene expression changes in exposed fish. Fathead minnows were deployed in cages for 2, 4, or 8 days at three locations near two ...

USING REGIONAL EXPOSURE CRITERIA AND UPSTREAM REFERENCE DATA TO CHARACTERIZE SPATIAL AND TEMPORAL EXPOSURES TO CHEMICAL CONTAMINANTS

EPA Science Inventory

Analyses of biomarkers in fish were used to evaluate exposures among locations and across time. Two types of references were used for comparison, an upstream reference sample remote from known point sources and regional exposure criteria derived from a basline of fish from refere...

50 CFR 85.47 - Program crediting.

Code of Federal Regulations, 2012 CFR

2012-10-01

... identify projects funded by the Clean Vessel Act. The Sport Fish Restoration logo follows: ER27AU97.011 (b... accomplishments or education/information. Display the logo in the appropriate location, according to § 85.43(e... purchase of fishing equipment and motorboat fuels. (e) Logo colors. Option 1 in paragraph (e)(1) of this...

50 CFR 85.47 - Program crediting.

Code of Federal Regulations, 2011 CFR

2011-10-01

... identify projects funded by the Clean Vessel Act. The Sport Fish Restoration logo follows: ER27AU97.011 (b... accomplishments or education/information. Display the logo in the appropriate location, according to § 85.43(e... purchase of fishing equipment and motorboat fuels. (e) Logo colors. Option 1 in paragraph (e)(1) of this...

MERCURY IN SEDIMENTS AND FISH FROM NORTH MISSISSIPPI LAKES AND SUBSEQUENT HUMAN HAZARD EVALUATION

EPA Science Inventory

Sediments and/or fish were collected from Sardis, Enid and Grenada Lakes, which are located in three different watersheds in North Mississippi, in order to assess mercury contamination. The mean total mercury concentration in sediments from Enid Lake in 1997 was 0.154 mg Hg/kg, w...

Houston-Galveston Navigation Channel Shoaling Study

DTIC Science & Technology

2014-12-01

compared to data collected at other times during the year. If this is the case, sediment would tend to collect farther down the channel toward Red Fish ...27 28 29 30 31 32 33 Location along channel (1000 m increments) Pe rc en t ( % ) Bayport Red Fish Reef Pe rc en t ( % ) ERDC/CHL TR-14-14 12...in the bay tends to evacuate. For the wind and flow conditions that were investigated previously, the net drift in the channel upland from Red Fish

Reconnaissance Report. Sedimentation Problem, Quincy Bay, Illinois

DTIC Science & Technology

1987-09-01

are shown on figure 7 of the Fish and Wildife Service’s Planning Aid Report. Area D5 is primarily an agricultural site located within the Indian Grave...and that the placement of dredged material will be permanent. 20 Disposal Site 1 (designated D5 in the Fish and Wildife Service’s Planning Aid Report...provide a more than adequate depth for recreational craft. The U.S. Fish and Wildife Service, in their Planning Aid Report (appendix B), also has

Ocean in Motion

NASA Technical Reports Server (NTRS)

1999-01-01

Under a data purchase agreement with Goddard Space Flight Center, Orbital Sciences Corporation has been able to contract building of the Sea-Viewing Wide-Field-of-View Sensor (SeaWIFS). Orbital Sciences was then able commercialized the data that the satellite produces. These data are used to create daily fish finding maps, allowing fishing fleets to focus on locations where many commercially important surface feeding fish, like tuna and swordfish, congregate. In agriculture and forestry, SeaWIFS' images offer an alternative to direct on-site inspection or expensive serial photography.

Alternative barging strategies to improve survival of salmonids transported from Lower Granite Dam: Final report from the 2006-2008 spring/summer Chinook salmon and Steelhead juvenile migrations

USGS Publications Warehouse

Marsh, Tiffani M.; Muir, William D.; Sandford, Benjamin P.; Smith, Steven G.; Elliott, Diane G.

2012-01-01

We found no evidence of a consistent difference in SARs for fish released at the two barge-release locations. Data were not sufficient to evaluate the effects of fish pathogens on avian predation. There was clear evidence that fish of both species released at Astoria were less vulnerable to avian predators than those released at the customary site at Skamania Landing. Unfortunately, this survival benefit did not translate to higher SARs, as it was offset by higher rates of straying by fish released from Astoria. This was likely a result of greater impairment to homing ability for fish released at Astoria.

A possible cause of sunburn in fish

USGS Publications Warehouse

1958-01-01

A LESION DESCRIBED AS A GRAY ΡATCH GENERALLY LOCATED ΑΝΤΕRIOR TO THE DORSAL FIN has been associated with high mortality of fish on numerous occasions in production hatcheries throughout the United States. This lesion has been called "sunburn" or "backpeel." No bacteria or other pathogens have been found in fish with these symptoms. For example, at a Montana hatchery in April 1956, mortality of 10 to 15 percent occurred daily and this lesion was the only syndrome found.  On occasion, shade has prevented this condition and even restored affected fish to an apparent normal condition; thus there has seemed to be a correlation between sunshine and the condition in fish. To our knowledge, this has been the only therapy attempted.

Diel behavior of rearing fall Chinook salmon

USGS Publications Warehouse

Tiffan, Kenneth F.; Kock, Tobias J.; Skalicky, Joseph J.

2010-01-01

In fisheries science, habitat use is often inferred when fish are sampled or observed in a particular location. Physical habitat is typically measured where fish are found, and thus deemed important to habitat use. Although less common, a more informative approach is to measure or observe fish behavior within given habitats to more thoroughly assess their use of those locations. While this approach better reflects how fish use habitat, fish behavior can be difficult to quantify, particularly at night. For example, Tiffan and others (2002, 2006) were able to quantify habitat availability and characteristics that were important for rearing juvenile fall Chinook Salmon (Oncorhynchus tshawytscha) in the Hanford Reach of the Columbia River. The authors, however, could only speculate as to how juvenile salmon use habitat and respond to changes in water level fluctuations. Conversely, in this study we provide data on the diel activities of rearing juvenile wild fall Chinook Salmon which provides a better understanding of how fish “use” these rearing habitats. Diel behavior patterns are important because fish in the Hanford Reach are often stranded on shorelines when the water level rapidly recedes because of hydroelectric power generation at upriver dams (Nugent and others 2002; Anglin and others 2006). We hypothesize that juvenile salmon are at greater risk of stranding at night because they are less active and occupy habitat differently than during the day. We used underwater videography to collect behavioral information during the day and night to determine if juvenile fall Chinook Salmon are more susceptible to stranding when water level fluctuations occur at night.

A review of mercury concentrations in freshwater fishes of Africa: patterns and predictors.

PubMed

Hanna, Dalal E L; Solomon, Christopher T; Poste, Amanda E; Buck, David G; Chapman, Lauren J

2015-02-01

The methylated form of mercury (methylmercury) is a potent neurotoxic chemical and a contaminant of concern for fisheries because of its potential effects on ecosystem and human health. In Africa, inland fisheries are a crucial component of food and economic security, yet little information is available on mercury (Hg) contamination trends. The authors compiled published data on Hg contamination in African freshwater fishes, invertebrates, and plankton, as well as on potential drivers of Hg concentrations in these organisms. From 30 identified studies the authors assembled 407 total Hg concentrations from 166 fish species, 10 types of invertebrates, and various plankton, distributed across 31 water bodies in 12 countries. In fishes, total Hg concentrations, expressed as mean (± standard deviation) per location, averaged 156.0 ± 328.0 ng/g wet weight and ranged from 5.5 ng/g wet weight to 1865.0 ng/g wet weight. Only locations with nearby artisanal and small-scale gold mining operations had mean Hg concentrations above the World Health Organization/Food and Agriculture Organization's recommended guideline for fish (500 ng/g wet wt). The authors used mixed models to detect relationships between fish Hg concentrations and trophic level, mass, latitude, and chlorophyll a. Mass, trophic level, and latitude were all positive predictors of Hg concentration, confirming the presence of Hg bioaccumulation and biomagnification in African fishes. Although strong trends in Hg concentrations were evident, the present study also highlights limited availability of Hg data in Africa. © 2014 SETAC.

Incorporating spatial context into the analysis of salmonid habitat relations: Chapter 18

USGS Publications Warehouse

Torgersen, Christian E.; Baxter, Colden V.; Ebersole, J.L.; Gresswell, Bob; Church, Michael; Biron, Pascale M.; Roy, Andre G.

2012-01-01

In this response to the chapter by Lapointe (this volume), we discuss the question of why it is so difficult to predict salmonid-habitat relations in gravel-bed rivers and streams. We acknowledge that this cannot be an exhaustive treatment of the subject and, thus, identify what we believe are several key issues that demonstrate the necessity of incorporating spatial context into the analysis of fish-habitat data. Our emphasis is on spatial context (i.e., scale and location), but it is important to note that the same principles may be applied with some modification to temporal context, which is beyond the scope of this chapter.

Fish fauna in the Krueng Geumpang River, Indonesia

NASA Astrophysics Data System (ADS)

Nasir, M.; Munira, M.; Muchlisin, Z. A.

2018-03-01

The objective of the present study was to examine the diversity and distribution of fishes in the Krueng Geumpang River.The survey was conducted from 1st to 22nd August 2015 with six sampling locations. Fish samples were caught using gillnets and fish traps. Data analyses performed in this study were the frequency of incidence (FOI), diveristy index (H’), and dominance index (C). A total of 88 individual fishes belong to 12 species and six familia. Tor soro is the dominant species in this river. There are two species of fish that widely distributed i.e. Tor soro (FOI = 66.7 %) and Neolissochilus thienemanni (FOI = 50.0 %). The Shannon-Wienner diversity index ranged from 0.00 to 2.05. The low value of the diversity index (H’) can be caused by factors such as river morphology, poisoning, mining, and overfishing.

Physical mapping of 5S and 18S ribosomal DNA in three species of Agave (Asparagales, Asparagaceae).

PubMed

Gomez-Rodriguez, Victor Manuel; Rodriguez-Garay, Benjamin; Palomino, Guadalupe; Martínez, Javier; Barba-Gonzalez, Rodrigo

2013-01-01

Agave Linnaeus, 1753 is endemic of America and is considered one of the most important crops in Mexico due to its key role in the country's economy. Cytogenetic analysis was carried out in Agave tequilana Weber, 1902 'Azul', Agave cupreata Trelease et Berger, 1915 and Agave angustifolia Haworth, 1812. The analysis showed that in all species the diploid chromosome number was 2n = 60, with bimodal karyotypes composed of five pairs of large chromosomes and 25 pairs of small chromosomes. Furthermore, different karyotypical formulae as well as a secondary constriction in a large chromosome pair were found in all species. Fluorescent in situ hybridization (FISH) was used for physical mapping of 5S and 18S ribosomal DNA (rDNA). All species analyzed showed that 5S rDNA was located in both arms of a small chromosome pair, while 18S rDNA was associated with the secondary constriction of a large chromosome pair. Data of FISH analysis provides new information about the position and number of rDNA loci and helps for detection of hybrids in breeding programs as well as evolutionary studies.

Physical mapping of 5S and 18S ribosomal DNA in three species of Agave (Asparagales, Asparagaceae)

PubMed Central

Gomez-Rodriguez, Victor Manuel; Rodriguez-Garay, Benjamin; Palomino, Guadalupe; Martínez, Javier; Barba-Gonzalez, Rodrigo

2013-01-01

Abstract Agave Linnaeus, 1753 is endemic of America and is considered one of the most important crops in Mexico due to its key role in the country’s economy. Cytogenetic analysis was carried out in Agave tequilana Weber, 1902 ‘Azul’, Agave cupreata Trelease et Berger, 1915 and Agave angustifolia Haworth, 1812. The analysis showed that in all species the diploid chromosome number was 2n = 60, with bimodal karyotypes composed of five pairs of large chromosomes and 25 pairs of small chromosomes. Furthermore, different karyotypical formulae as well as a secondary constriction in a large chromosome pair were found in all species. Fluorescent in situ hybridization (FISH) was used for physical mapping of 5S and 18S ribosomal DNA (rDNA). All species analyzed showed that 5S rDNA was located in both arms of a small chromosome pair, while 18S rDNA was associated with the secondary constriction of a large chromosome pair. Data of FISH analysis provides new information about the position and number of rDNA loci and helps for detection of hybrids in breeding programs as well as evolutionary studies. PMID:24260700

Spring distributions and relationships with land cover and hydrogeologic strata in a karst landscape in Winona County, Minnesota, USA

USGS Publications Warehouse

Williams, M.A.; Vondracek, B.

2010-01-01

Karst aquifers are important groundwater resources, but are vulnerable to contamination due to relatively rapid subsurface transport. Springs, points where the landscape and water table intersect and cold groundwater discharges, link aquifer systems with land surfaces and water bodies. As such, in many regions, they are critical to the viability of lakes, streams and cold-water fish communities. An understanding of where springs are located is important to watershed, fishery and environmental management efforts in karst regions. To better understand spatial distribution of springs and as a potential method for identifying variables that characterize locations of springs for improved land and watershed management, a nearest-neighbor analysis and a discriminant function analysis (DFA) of springs were conducted in Winona County, Minnesota USA, a karst landscape. Nearestneighbor analysis examined the spatial spring distribution. Twenty-two variables describing the locations of springs were analyzed to ascertain their ability to discriminate correct aquifer unit or bedrock unit classification for each spring. Springs were clumped with the highest densities in the lowest elevations. Springs were correctly assigned to aquifer units and bedrock units with eight and 11 landscape variables, respectively. Forest land cover was the only land cover type contributing to spring discrimination. Consideration of upland human activities, particularly in forested areas, on spring discharge along with a better understanding of characteristics describing spring locations could lead to better management activities that locate and protect springs and their important contributions to regional ecohydrology. ?? 2010 Springer-Verlag.

Spring distribution in Winona County, Minnesota, USA and the relationship with geologic strata in a karst landscape

USGS Publications Warehouse

Vondracek, Bruce C.; Williams, Mary A.

2010-01-01

Karst aquifers are important groundwater resources, but are vulnerable to contamination due to relatively rapid subsurface transport. Springs, points where the landscape and water table intersect and cold groundwater discharges, link aquifer systems with land surfaces and water bodies. As such, in many regions, they are critical to the viability of lakes, streams and cold-water fish communities. An understanding of where springs are located is important to watershed, fishery and environmental management efforts in karst regions. To better understand spatial distribution of springs and as a potential method for identifying variables that characterize locations of springs for improved land and watershed management, a nearest-neighbor analysis and a discriminant function analysis (DFA) of springs were conducted in Winona County, Minnesota, USA, a karst landscape. Nearest-neighbor analysis examined the spatial spring distribution. Twenty-two variables describing the locations of springs were analyzed to ascertain their ability to discriminate correct aquifer unit or bedrock unit classification for each spring. Springs were clumped with the highest densities in the lowest elevations. Springs were correctly assigned to aquifer units and bedrock units with eight and 11 landscape variables, respectively. Forest land cover was the only land cover type contributing to spring discrimination. Consideration of upland human activities, particularly in forested areas, on spring discharge along with a better understanding of characteristics describing spring locations could lead to better management activities that locate and protect springs and their important contributions to regional ecohydrology.

DOE Office of Scientific and Technical Information (OSTI.GOV)

Lockwood, Jr., Neil; McLellan, Jason G; Crossley, Brian

The Resident Fish Stock Status above Chief Joseph and Grand Coulee Dams Project, commonly known as the Joint Stock Assessment Project (JSAP) is a management tool using ecosystem principles to manage artificial fish assemblages and native fish in altered environments existing in the Columbia River System above Chief Joseph and Grand Coulee Dams (blocked area). The three-phase approach of this project will enhance the fisheries resources of the blocked area by identifying data gaps, filling data gaps with research, and implementing management recommendations based on research results. The Blocked Area fisheries information housed in a central location will allow managersmore » to view the entire system while making decisions, rather than basing management decisions on isolated portions of the system. The JSAP (NWPPC program measure 10.8B.26) is designed and guided jointly by fisheries managers in the blocked area and the Columbia Basin blocked area management plan (1998). The initial year of the project (1997) identified the need for a central data storage and analysis facility, coordination with the StreamNet project, compilation of blocked area fisheries information, and a report on the ecological condition of the Spokane River System. These needs were addressed in 1998 by acquiring a central location with a data storage and analysis system, coordinating a pilot project with StreamNet, compiling fisheries distribution data throughout the blocked area, identifying data gaps based on compiled information, and researching the ecological condition of the Spokane River. In order to ensure that any additional information collected throughout the life of this project will be easily stored and manipulated by the central storage facility, it was necessary to develop standardized methodologies between the JSAP fisheries managers. The use of common collection and analytical tools is essential to the process of streamlining joint management decisions. In 1999 and 2000 the project began to address some of the identified data gaps, throughout the blocked area, with a variety of newly developed sampling projects, as well as, continuing with ongoing data collection of established projects.« less

Estimating Common Growth Patterns in Juvenile Chinook Salmon (Oncorhynchus tshawytscha) from Diverse Genetic Stocks and a Large Spatial Extent.

PubMed

Goertler, Pascale A L; Scheuerell, Mark D; Simenstad, Charles A; Bottom, Daniel L

2016-01-01

Life history variation in Pacific salmon (Oncorhynchus spp.) supports species resilience to natural disturbances and fishery exploitation. Within salmon species, life-history variation often manifests during freshwater and estuarine rearing, as variation in growth. To date, however, characterizing variability in growth patterns within and among individuals has been difficult via conventional sampling methods because of the inability to obtain repeated size measurements. In this study we related otolith microstructures to growth rates of individual juvenile Chinook salmon (O. tshawytscha) from the Columbia River estuary over a two-year period (2010-2012). We used dynamic factor analysis to determine whether there were common patterns in growth rates within juveniles based on their natal region, capture location habitat type, and whether they were wild or of hatchery origin. We identified up to five large-scale trends in juvenile growth rates depending on month and year of capture. We also found that hatchery fish had a narrower range of trend loadings for some capture groups, suggesting that hatchery fish do not express the same breadth of growth variability as wild fish. However, we were unable to resolve a relationship between specific growth patterns and habitat transitions. Our study exemplifies how a relatively new statistical analysis can be applied to dating or aging techniques to summarize individual variation, and characterize aspects of life history diversity.

Estimating Common Growth Patterns in Juvenile Chinook Salmon (Oncorhynchus tshawytscha) from Diverse Genetic Stocks and a Large Spatial Extent

PubMed Central

Scheuerell, Mark D.; Simenstad, Charles A.; Bottom, Daniel L.

2016-01-01

Life history variation in Pacific salmon (Oncorhynchus spp.) supports species resilience to natural disturbances and fishery exploitation. Within salmon species, life-history variation often manifests during freshwater and estuarine rearing, as variation in growth. To date, however, characterizing variability in growth patterns within and among individuals has been difficult via conventional sampling methods because of the inability to obtain repeated size measurements. In this study we related otolith microstructures to growth rates of individual juvenile Chinook salmon (O. tshawytscha) from the Columbia River estuary over a two-year period (2010–2012). We used dynamic factor analysis to determine whether there were common patterns in growth rates within juveniles based on their natal region, capture location habitat type, and whether they were wild or of hatchery origin. We identified up to five large-scale trends in juvenile growth rates depending on month and year of capture. We also found that hatchery fish had a narrower range of trend loadings for some capture groups, suggesting that hatchery fish do not express the same breadth of growth variability as wild fish. However, we were unable to resolve a relationship between specific growth patterns and habitat transitions. Our study exemplifies how a relatively new statistical analysis can be applied to dating or aging techniques to summarize individual variation, and characterize aspects of life history diversity. PMID:27695094

Seasonal changes in fish assemblage structure at a shallow seamount in the Gulf of California.

PubMed

Jorgensen, Salvador J; Klimley, A Peter; Muhlia-Melo, Arturo; Morgan, Steven G

2016-01-01

Seamounts have generally been identified as locations that can promote elevated productivity, biomass and predator biodiversity. These properties attract seamount-associated fisheries where elevated harvests can be obtained relative to surrounding areas. There exists large variation in the geological and oceanographic environment among the thousands of locations that fall within the broad definition of seamount. Global seamount surveys have revealed that not all seamounts are hotspots of biodiversity, and there remains a strong need to understand the mechanisms that underlie variation in species richness observed. We examined the process of fish species assembly at El Bajo Espiritu Santo (EBES) seamount in the Gulf of California over a five-year study period. To effectively quantify the relative abundance of fast-moving and schooling fishes in a 'blue water' habitat, we developed a simplified underwater visual census (UVC) methodology and analysis framework suitable for this setting and applicable to future studies in similar environments. We found correlations between seasonally changing community structure and variability in oceanographic conditions. Individual species responses to thermal habitat at EBES revealed three distinct assemblages, a 'fall assemblage' tracking warmer overall temperature, a 'spring assemblage' correlated with cooler temperature, and a 'year-round assemblage' with no significant response to temperature. Species richness was greatest in spring, when cool and warm water masses stratified the water column and a greater number of species from all three assemblages co-occurred. We discuss our findings in the context of potential mechanisms that could account for predator biodiversity at shallow seamounts.

Diet of juvenile and adult American Shad in the Columbia River

USGS Publications Warehouse

Sauter, Sally T.; Blubaugh, J; Parsley, Michael J.

2011-01-01

The diet of juvenile and adult American shad Alosa sapidissima captured from various locations in the Columbia River was investigated during 2007 and 2008. Collection efforts in 2007 were restricted to fish collected from existing adult and juvenile fish collection facilities located at Bonneville Dam and to adult shad captured by angling downstream from Bonneville Dam. In 2008, we used gillnets, electrofishing, beach seining, or cast nets to collect juvenile and adult shad from the saline estuary near Astoria (approximately river km 24) to just upstream from McNary Dam (approximately river km 472). We examined the stomach contents of 436 American shad captured in 2007 and 1,272 captured in 2008. Fish caught within the river were much more likely to contain food items than fish removed from fish collection facilities.

The diet of age-0 American shad varied spatially and temporally, but was comprised primarily of crustaceans and insects. Prey diversity of age-0 American shad, as assessed by the Shannon Diversity Index, increased with decreasing distance to the estuary. Pre- and partial-spawn American shad primarily consumed Corophium spp. throughout the Columbia River; however, post-spawn adults primarily consumed gastropods upstream of McNary Dam

Dynamic in-lake spawning migrations by female sockeye salmon

USGS Publications Warehouse

Young, Daniel B.; Woody, C.A.

2007-01-01

Precise homing by salmon to natal habitats is considered the primary mechanism in the evolution of population-specific traits, yet few studies have focused on this final phase of their spawning migration. We radio tagged 157 female sockeye salmon (Oncorhynchus nerka) as they entered Lake Clark, Alaska, and tracked them every 1-10 days to their spawning locations. Contrary to past research, no specific shoreline migration pattern was observed (e.g., clockwise) nor did fish enter a tributary unless they spawned in that tributary. Tributary spawning fish migrated faster (mean = 4.7 km??day-1, SD = 2.7, vs. 1.6 km??day-1, SD = 2.1) and more directly (mean linearity = 0.8, SD = 0.2, vs. 0.4, SD = 0.2) than Lake Clark beach spawning fish. Although radio-tagged salmon migrated to within 5 km of their final spawning location in an average of 21.2 days (SD = 13.2), some fish migrated five times the distance necessary and over 50 days to reach their spawning destination. These results demonstrate the dynamic nature of this final phase of migration and support studies indicating a higher degree of homing precision by tributary spawning fish. ?? Journal compilation 2007 Blackwell Munksgaard No claim to original US government works.

Diversity in destinations, routes and timing of small adult and sub-adult striped bass Morone saxatilis on their southward autumn migration

USGS Publications Warehouse

Mather, Martha E.; Finn, John T.; Pautzke, Sarah M.; Fox, Dewayne A.; Savoy, Tom; Brundage, Harold M.; Deegan, Linda A.; Muth, Robert M.

2010-01-01

Almost three-quarters of the 46 young adult and sub-adult striped bass Morone saxatilis that were acoustically tagged in Plum Island Estuary, Massachusetts, U.S.A., in the summer of 2006 were detected in one or more southern coastal arrays during their autumn migration. On the basis of the trajectories along which these M. saxatilis moved from feeding to overwintering areas, three migratory groups emerged. After leaving Plum Island Estuary, about half of the fish were detected only in a mid-latitude array, Long Island Sound. The other half of the tagged fish were detected during autumn and winter in a more southern array, the Delaware Estuary. This latter group of fish may have used two routes. Some travelled to the Delaware Estuary through Long Island Sound while other fish may have taken a second, more direct, coastal route that did not include Long Island Sound. Consequently, a seemingly homogeneous group of fish tagged at the same time in the same non-natal feeding location exhibited a diversity of southward movement patterns that could affect population-level processes. These three groups that differed in overwintering location and migration route could be movement contingents with migratory connectivity.

Multi-Scale Approach for Predicting Fish Species Distributions across Coral Reef Seascapes

PubMed Central

Pittman, Simon J.; Brown, Kerry A.

2011-01-01

Two of the major limitations to effective management of coral reef ecosystems are a lack of information on the spatial distribution of marine species and a paucity of data on the interacting environmental variables that drive distributional patterns. Advances in marine remote sensing, together with the novel integration of landscape ecology and advanced niche modelling techniques provide an unprecedented opportunity to reliably model and map marine species distributions across many kilometres of coral reef ecosystems. We developed a multi-scale approach using three-dimensional seafloor morphology and across-shelf location to predict spatial distributions for five common Caribbean fish species. Seascape topography was quantified from high resolution bathymetry at five spatial scales (5–300 m radii) surrounding fish survey sites. Model performance and map accuracy was assessed for two high performing machine-learning algorithms: Boosted Regression Trees (BRT) and Maximum Entropy Species Distribution Modelling (MaxEnt). The three most important predictors were geographical location across the shelf, followed by a measure of topographic complexity. Predictor contribution differed among species, yet rarely changed across spatial scales. BRT provided ‘outstanding’ model predictions (AUC = >0.9) for three of five fish species. MaxEnt provided ‘outstanding’ model predictions for two of five species, with the remaining three models considered ‘excellent’ (AUC = 0.8–0.9). In contrast, MaxEnt spatial predictions were markedly more accurate (92% map accuracy) than BRT (68% map accuracy). We demonstrate that reliable spatial predictions for a range of key fish species can be achieved by modelling the interaction between the geographical location across the shelf and the topographic heterogeneity of seafloor structure. This multi-scale, analytic approach is an important new cost-effective tool to accurately delineate essential fish habitat and support conservation prioritization in marine protected area design, zoning in marine spatial planning, and ecosystem-based fisheries management. PMID:21637787

Multi-scale approach for predicting fish species distributions across coral reef seascapes.

PubMed

Pittman, Simon J; Brown, Kerry A

2011-01-01

Two of the major limitations to effective management of coral reef ecosystems are a lack of information on the spatial distribution of marine species and a paucity of data on the interacting environmental variables that drive distributional patterns. Advances in marine remote sensing, together with the novel integration of landscape ecology and advanced niche modelling techniques provide an unprecedented opportunity to reliably model and map marine species distributions across many kilometres of coral reef ecosystems. We developed a multi-scale approach using three-dimensional seafloor morphology and across-shelf location to predict spatial distributions for five common Caribbean fish species. Seascape topography was quantified from high resolution bathymetry at five spatial scales (5-300 m radii) surrounding fish survey sites. Model performance and map accuracy was assessed for two high performing machine-learning algorithms: Boosted Regression Trees (BRT) and Maximum Entropy Species Distribution Modelling (MaxEnt). The three most important predictors were geographical location across the shelf, followed by a measure of topographic complexity. Predictor contribution differed among species, yet rarely changed across spatial scales. BRT provided 'outstanding' model predictions (AUC = >0.9) for three of five fish species. MaxEnt provided 'outstanding' model predictions for two of five species, with the remaining three models considered 'excellent' (AUC = 0.8-0.9). In contrast, MaxEnt spatial predictions were markedly more accurate (92% map accuracy) than BRT (68% map accuracy). We demonstrate that reliable spatial predictions for a range of key fish species can be achieved by modelling the interaction between the geographical location across the shelf and the topographic heterogeneity of seafloor structure. This multi-scale, analytic approach is an important new cost-effective tool to accurately delineate essential fish habitat and support conservation prioritization in marine protected area design, zoning in marine spatial planning, and ecosystem-based fisheries management.

Fish embryo toxicity test: identification of compounds with weak toxicity and analysis of behavioral effects to improve prediction of acute toxicity for neurotoxic compounds.

PubMed

Klüver, Nils; König, Maria; Ortmann, Julia; Massei, Riccardo; Paschke, Albrecht; Kühne, Ralph; Scholz, Stefan

2015-06-02

The fish embryo toxicity test has been proposed as an alternative for the acute fish toxicity test, but concerns have been raised for its predictivity given that a few compounds have been shown to exhibit a weak acute toxicity in the fish embryo. In order to better define the applicability domain and improve the predictive capacity of the fish embryo test, we performed a systematic analysis of existing fish embryo and acute fish toxicity data. A correlation analysis of a total of 153 compounds identified 28 compounds with a weaker or no toxicity in the fish embryo test. Eleven of these compounds exhibited a neurotoxic mode of action. We selected a subset of eight compounds with weaker or no embryo toxicity (cyanazine, picloram, aldicarb, azinphos-methyl, dieldrin, diquat dibromide, endosulfan, and esfenvalerate) to study toxicokinetics and a neurotoxic mode of action as potential reasons for the deviating fish embryo toxicity. Published fish embryo LC50 values were confirmed by experimental analysis of zebrafish embryo LC50 according to OECD guideline 236. Except for diquat dibromide, internal concentration analysis did not indicate a potential relation of the low sensitivity of fish embryos to a limited uptake of the compounds. Analysis of locomotor activity of diquat dibromide and the neurotoxic compounds in 98 hpf embryos (exposed for 96 h) indicated a specific effect on behavior (embryonic movement) for the neurotoxic compounds. The EC50s of behavior for neurotoxic compounds were close to the acute fish toxicity LC50. Our data provided the first evidence that the applicability domain of the fish embryo test (LC50s determination) may exclude neurotoxic compounds. However, neurotoxic compounds could be identified by changes in embryonic locomotion. Although a quantitative prediction of acute fish toxicity LC50 using behavioral assays in fish embryos may not yet be possible, the identification of neurotoxicity could trigger the conduction of a conventional fish acute toxicity test or application of assessment factors while considering the very good fish embryo-acute fish toxicity correlation for other compounds.

Parasites of marine, freshwater and farmed fishes of Portugal: a review.

PubMed

Eiras, Jorge da Costa

2016-01-01

An extensive literature review is made of the parasites in marine and freshwater fish in mainland Portugal, the Portuguese archipelagos of the Azores and Madeira, as well as in farmed fish. The host(s) of each parasite species, its location in the host, site of capture of the host, whenever possible, and all the available bibliographic references are described. The economic importance of some parasites and the zoonotic relevance of some parasitic forms are discussed. A general overview of the data is provided, and some research lines are suggested in order to increase and complement the current body of knowledge about the parasites of fish from Portugal.

Fishing Forecasts

NASA Technical Reports Server (NTRS)

1988-01-01

ROFFS stands for Roffer's Ocean Fishing Forecasting Service, Inc. Roffer combines satellite and computer technology with oceanographic information from several sources to produce frequently updated charts sometimes as often as 30 times a day showing clues to the location of marlin, sailfish, tuna, swordfish and a variety of other types. Also provides customized forecasts for racing boats and the shipping industry along with seasonal forecasts that allow the marine industry to formulate fishing strategies based on foreknowledge of the arrival and departure times of different fish. Roffs service exemplifies the potential for benefits to marine industries from satellite observations. Most notable results are reduced search time and substantial fuel savings.

Status of downstream fish passage at hydroelectric projects in the northeast, USA

USGS Publications Warehouse

Odeh, Mufeed; Orvis, Curtis

1997-01-01

In the northeastern United States several guidance, protection, and conveyance methods have been employed to assist downstream migrating fish. Overlay racks, standard bar racks with close spacing, louvers, curtain walls, guide walls, netting, and other means have been used to guide and protect fish from entrainment. The design process of these facilities comprises consideration of various factors, including flow approach, attraction flow, guidance and protection devices, bypass location, conveyance mechanism, and plunge pool conditions. This paper presents the status of the design criteria for downstream fish passage facilities at hydroelectric sites in the northeast part of the United States. Examples of existing facilities are given.

Characterization of Fish Creek, Teton County, Wyoming, 2004-08

USGS Publications Warehouse

Eddy-Miller, Cheryl A.; Peterson, David A.; Wheeler, Jerrod D.; Leemon, Daniel J.

2010-01-01

Fish Creek, a tributary to the Snake River, is about 15 river miles long and is located in Teton County in western Wyoming near the town of Wilson (fig. 1). Public concern about nuisance growths of aquatic plants in Fish Creek has been increasing since the early 2000s. To address this concern, the U.S. Geological Survey, in cooperation with the Teton Conservation District, began studying Fish Creek in 2004 to describe the hydrology of the creek and later (2007?08) to characterize the water quality and the biological communities. The purpose of this fact sheet is to summarize the study results from 2004 to 2008.

Factors Affecting Moulting Patterns of Atlantic Lobster (Homarus americanus) in the East Coast of Canada

NASA Astrophysics Data System (ADS)

Vanderstichel, R.; Thakur, K. K.; Revie, C. W.; Lavallée, J.

2016-02-01

In recent years, there has been a significant increase in the proportion of soft-shelled lobsters caught in Atlantic Canada. Soft-shelled lobsters pose a severe economic challenge to the lobster industry due to low meat yield and poor survivability during holding and transportation. The objectives of this study were to describe the moulting patterns of lobster in Atlantic Canada and to identify factors associated with soft-shelled lobsters. We used routinely collected data by the Atlantic Lobster Moult and Quality monitoring project from a range of locations within two lobster fishing areas in southwestern Nova Scotia. We incorporated environmental (sea surface temperature) and geographical (depth) variables before applied logistic and time-series regression methods to analyze the data. The analyses included more than 119,000 samples from 2004 to 2014. The proportion of soft-shelled lobsters ranged from 9 to 38% during these years. The logistic model demonstrated that stage of moulting, sex of the lobster, level of hemolymph concentration and median depth of the fishing locations were highly associated with the shell hardness of lobsters. This model further indicated that the shell quality was significantly influenced by month of sampling and the fishing areas from which the lobsters were caught, suggesting seasonal and regional differences. Additionally, significant inter-year variability in the shell quality indicated potential impact of climatic variation during these years. This hypothesis is supported by our initial analysis suggesting that the hemolymph concentration is associated with changes in sea surface temperature and ongoing work which evaluates the impact of temperature fluctuation on shell quality will be presented. Findings from this study will be of value to the lobster industry in helping to determine optimal fishing areas and periods, to improve the shell quality of landed lobsters and therefore to increase economic returns.

The complete mitochondrial genome of the black star fat minnow (Rhynchocypris semotilus), an endemic and endangered fish of Korea.

PubMed

Yu, Jeong-Nam; Kim, Byung-Jik; Kim, Changmu; Yeo, Joo-Hong; Kim, Soonok

2017-01-01

The Black star fat minnow (Rhynchocypris semotilus) is an endemic and critically endangered freshwater fish in Korea. Its genome was 16 605 bp long and consisted of 13 protein-coding genes (PCG), two rRNA genes, 22 tRNA genes, and a control region. The gene order and the composition of R. semotilus were similar to that of most other vertebrates. Four overlapping regions in ATP8/ATP6, ATP6/COX3, ND4L/ND4, and ND5/ND6, among the 13 PCGs were found. The control region was located between the tRNA-Pro and tRNA-Phe genes and was determined to be 935 bp in length with the 3' end containing a 12 TA-repeat sequence. Phylogenetic analysis suggested that R. semotilus is most closely related to R. oxycephalus.

Optimizing water purchases for an Environmental Water Account

NASA Astrophysics Data System (ADS)

Lund, J. R.; Hollinshead, S. P.

2005-12-01

State and federal agencies in California have established an Environmental Water Account (EWA) to buy water to protect endangered fish in the San Francisco Bay/ Sacramento-San Joaquin Delta Estuary. This paper presents a three-stage probabilistic optimization model that identifies least-cost strategies for purchasing water for the EWA given hydrologic, operational, and biological uncertainties. This approach minimizes the expected cost of long-term, spot, and option water purchases to meet uncertain flow dedications for fish. The model prescribes the location, timing, and type of optimal water purchases and can illustrate how least-cost strategies change with hydrologic, operational, biological, and cost inputs. Details of the optimization model's application to California's EWA are provided with a discussion of its utility for strategic planning and policy purposes. Limitations in and sensitivity analysis of the model's representation of EWA operations are discussed, as are operational and research recommendations.

The influence of logjams on largemouth bass (Micropterus salmoides) concentrations on the lower Roanoke River, a large sand-bed river

USGS Publications Warehouse

Schenk, Edward R.; McCargo, Jeremy W.; Moulin, Bertrand; Hupp, Cliff R.; Richter, Jean M.

2015-01-01

This study examines the relation between logjams and largemouth bass (Micropterus salmoides) on the alluvial sand-bed lower Roanoke River. Disparate data sets from previous bank erosion, fisheries, and large wood studies were used to compare the distribution of largemouth bass with logjam frequency. Logjams are related to the frequency of bank mass wasting increasing from near an upstream dam to the middle reach of the study segment and then decreasing as the river approaches sea level. The highest concentration of largemouth bass and logjams was in the middle reach (110 fish per hour and 21 jams per km). Another measure of largemouth bass distribution, fish biomass density (g h1 ), had a similar trend with logjams and was a better predictor of fish distribution versus logjams (R2= 0.6 and 0.8 and p = 0.08 and 0.02 for fish per hour and g h1 versus logjam, respectively). We theorize that the preference for adult bass to congregate near logjams indicates the use of the jams as feeding areas. The results of a principal component analysis indicate that fish biomass concentration is much more related to logjam frequency than channel geometry (width, depth, and bank height), bed grain size, bank erosion, or turbidity. The results of this research support recent studies on in-channel wood and fisheries: Logjams appear to be important for maintaining, or increasing, both largemouth bass numbers and total biomass of fish in large eastern North American rivers. Persistent logjams, important as habitat, exist where relatively undisturbed river reaches allow for bank erosion inputs of wood and available anchoring locations. Published 2014. This article is a U.S. Government work and is in the public domain in the USA.

Subcellular localization and functional characterization of a fish IRF9 from crucian carp Carassius auratus.

PubMed

Shi, Jun; Zhang, Yi-Bing; Liu, Ting-Kai; Sun, Fan; Gui, Jian-Fang

2012-08-01

Mammalian interferon (IFN) regulatory factor 9 (IRF-9) has long been recognized as the DNA sequence recognition subunit of IFN-stimulated gene factor 3 (ISGF3) complex, which is critical for type I IFN to induce the expression of IFN-stimulated genes (ISGs) against viral infection. Recent studies have shown that fish IFN exerts antiviral effects by induction of a number of ISGs and also of itself; however, little is known about the role of fish IRF9 in IFN signaling. Here we identify a fish IRF9 orthologue (CaIRF9) from IFN-producing cell line, crucian carp Carassius auratus blastulae embryonic (CAB) cells. Analysis of subcellular distribution of CaIRF9-green fluorescent protein indicates that CaIRF9 is constitutively present in the nucleus, which is driven by two nuclear localization signals (NLS), one locating within DNA-binding domain (DBD) of CaIRF9 and the other immediately behind DBD, although human IRF9 contains only one NLS analogous to the former of CaIRF9. Overexpression of CaIRF9 together with CaSTAT2 not only activates ISRE-containing promoter but also upregulates the expression of fish ISGs. Strikingly, CaIRF9 together with CaSTAT2 also exhibits an ability to activate crucian carp IFN promoter, and blockade of cellular CaIRF9 attenuates IFN itself-induced activation of crucian carp IFN promoter. Taken together, these data suggest that crucian carp IFN induces the expression of ISGs and also of itself possibly by the JAK-STAT signaling pathway that is conserved from fish to mammals. Copyright © 2012 Elsevier Ltd. All rights reserved.

Mercury in sport fish from the Sacramento-San Joaquin Delta region, California, USA.

PubMed

Davis, Jay A; Greenfield, Ben K; Ichikawa, Gary; Stephenson, Mark

2008-02-25

Total mercury (Hg) concentrations were determined in fillet tissue of sport fish captured in the Sacramento-San Joaquin River Delta and surrounding tributaries, a region particularly impacted by historic gold and mercury mining activity. In 1999 and 2000, mercury concentrations were measured in 767 samples from ten fish species. Largemouth bass (Micropterus salmoides), the primary target species, exhibited a median Hg concentration of 0.53 mug g(-1) (N=406). Only 23 largemouth bass (6%) were below a 0.12 mug g(-1) threshold corresponding to a 4 meals per month safe consumption limit. Most of the largemouth bass (222 fish, or 55% of the sample) were above a 0.47 mug g(-1) threshold corresponding to a 1 meal per month consumption limit. Striped bass (Morone saxatilis), channel catfish (Ictalurus punctatus), white catfish (Ameirus catus), and Sacramento pikeminnow (Ptychocheilus grandis) also had relatively high concentrations, with 31% or more of samples above 0.47 mug g(-1). Concentrations were lowest in redear (Lepomis microlophus) and bluegill (Lepomis macrochirus) sunfish, with most samples below 0.12 mug g(-1), suggesting that targeting these species for sport and subsistence fishing may reduce human dietary exposure to Hg in the region. An improved method of analysis of covariance was performed to evaluate spatial variation in Hg in largemouth bass captured in 2000, while accounting for variability in fish length. Using this approach, Hg concentrations were significantly elevated in the Feather River, northern Delta, lower Cosumnes River, and San Joaquin River regions. In spite of elevated Hg concentrations on all of its tributaries, the central Delta had concentrations that were low both in comparison to safe consumption guidelines and to other locations.

Assessing the suitability of a remotely operated vehicle (ROV) to study the fish community associated with offshore gas platforms in the Ionian Sea: a comparative analysis with underwater visual censuses (UVCs)

NASA Astrophysics Data System (ADS)

Andaloro, Franco; Ferraro, Maria; Mostarda, Edoardo; Romeo, Teresa; Consoli, Pierpaolo

2013-06-01

The effectiveness of a remotely operated vehicle (ROV) to describe the fish communities of three gas platforms located offshore Crotone (Italy, Ionian Sea) was investigated by comparing its observations with underwater visual censuses (UVCs). The study was carried out at two depth layers (0-6 and 12-18 m). Moreover, the ROV was used to survey three deeper depth layers up to 76 m. Overall, the ROV surveys failed to give a truthful representation of the fish communities underestimating the number of species and their abundances as compared to UVCs. The main discrepancies in data regarded crypto-benthic and nekto-benthic species, whereas the ROV proved to be a suitable method to census low-mobile and abundant planktivorous species. The differences between the fish assemblage described by the ROV, with respect to the one depicted by UVC, should be considered in the light of the technical limits of the recording camera, whose resolution and field of vision is clearly lower than the diver's eye. In addition, video images did not allow for the acquisition of a correct estimate of the distance between the individuals and the platform structures. This led, almost certainly, to an under- or over-estimation of fish abundance as regards to the censused volume. In spite of this, as a result of its capacity to reach depths inaccessible to scuba divers and then to add complementary information, the ROV could be used jointly with UVCs, in studies having as their objective the description of the fish communities associated with offshore platforms.

Spatial and temporal variation of the gill rakers of gizzard shad and silver carp in three Midwestern rivers

USGS Publications Warehouse

Walleser, Liza R.; Sandheinrich, Mark B.; Howard, David R.; Gaikowski, Mark P.; Amberg, Jon J.

2014-01-01

Improved management of invasive Silver Carp Hypophthalmichthys molitrix in the upper Mississippi River basin may be possible by better understanding the feeding abilities of this population. Food collection for filter-feeding fishes, such as Silver Carp, is influenced by the species-specific structure of their gill rakers. To investigate structural variation in gill rakers of Silver Carp, the morphology of gill rakers was quantified and compared with that of a native filter-feeding fish species which may compete with Silver Carp for food resources, Gizzard Shad Dorosoma cepedianum. Intra- and interspecies variation of gill rakers was examined in both species collected from three locations among four months. Interspecies analysis indicated the size of pores in gill rakers of Silver Carp were much larger than the interraker spacings of Gizzard Shad (95% CI ranged from 80.69 to 185.75 μm versus 16.72 to 47.36 μm, respectively). Intraspecies variation of gill rakers from Silver Carp was related to the overall size of fish and occurred only among sites where dissimilar sizes of fish were collected. This suggested the size of particles filtered by Silver Carp may be dependent upon ontogenic development rather than phenotypic plasticity in response to spatial or temporal factors. Intraspecies variation of gill rakers from Gizzard Shad occurred among site and monthly sampling data; however, variation was only attributable to overall size of fish for monthly sampling data. This suggested ontogeny may influence the filter-feeding ability of this species within a habitat. However, variation noted among sites, which was not attributable to size of fish, may indicate gill rakers are phenotypically plastic among Gizzard Shad populations of various river systems of the upper Mississippi River basin.

Molecular cytogenetic of the Amoy croaker, Argyrosomus amoyensis (Teleostei, Sciaenidae)

NASA Astrophysics Data System (ADS)

Liao, Mengxiang; Zheng, Jiao; Wang, Zhiyong; Wang, Yilei; Zhang, Jing; Cai, Mingyi

2017-08-01

The family Sciaenidae is remarkable for its species richness and economic importance. However, the cytogenetic data available in this fish group are still limited, especially those obtained using fluorescence in situ hybridization (FISH). In the present study, the chromosome characteristics of a sciaenid species, Argyrosomus amoyensis, were examined with several cytogenetic methods, including dual-FISH with 18S and 5S rDNA probes, and a self-genomic in situ hybridization procedure (Self-GISH). The karyotype of A. amoyensis comprised 2n=48 acrocentric chromosomes. A single pair of nucleolar organizer regions (NORs) was located at the proximal position of chromosome 1, which was positive for silver nitrate impregnation (AgNO3) staining and denaturation-propidium iodide (DPI) staining but negative for Giemsa staining and 4',6-diamidino-2-phenylindole (DAPI) staining, and was confirmed by FISH with 18S rDNA probes. The 5S rDNA sites were located at the centromeric region of chromosome 3. Telomeric FISH signals were detected at all chromosome ends with different intensities, but internal telomeric sequences (ITSs) were not found. Self-GISH resulted in strong signals distributed at the centromeric regions of all chromosomes. C-banding revealed not only centromeric heterochromatin, but also heterochromatin that located on NORs, in interstitial and distal telomeric regions of specific chromosomes. These results suggest that the karyotype of Amoy croaker was relatively conserved and primitive. By comparison with the reported cytogenetic data of other sciaenids, it can be deduced that although the karyotypic macrostructure and chromosomal localization of 18S rDNA are conserved, the distribution of 5S rDNA varies dynamically among sciaenid species. Thus, the 5S rDNA sites may have different evolutionary dynamics in relation to other chromosomal regions, and have the potential to be effective cytotaxonomic markers in Sciaenidae.

Combining participatory and socioeconomic approaches to map fishing effort in small-scale fisheries.

PubMed

Thiault, Lauric; Collin, Antoine; Chlous, Frédérique; Gelcich, Stefan; Claudet, Joachim

2017-01-01

Mapping the spatial allocation of fishing effort while including key stakeholders in the decision making process is essential for effective fisheries management but is difficult to implement in complex small-scale fisheries that are diffuse, informal and multifaceted. Here we present a standardized but flexible approach that combines participatory mapping approaches (fishers' spatial preference for fishing grounds, or fishing suitability) with socioeconomic approaches (spatial extrapolation of social surrogates, or fishing capacity) to generate a comprehensive map of predicted fishing effort. Using a real world case study, in Moorea, French Polynesia, we showed that high predicted fishing effort is not simply located in front of, or close to, main fishing villages with high dependence on marine resources; it also occurs where resource dependency is moderate and generally in near-shore areas and reef passages. The integrated approach we developed can contribute to addressing the recurrent lack of fishing effort spatial data through key stakeholders' (i.e., resource users) participation. It can be tailored to a wide range of social, ecological and data availability contexts, and should help improve place-based management of natural resources.

Combining participatory and socioeconomic approaches to map fishing effort in small-scale fisheries

PubMed Central

Collin, Antoine; Chlous, Frédérique; Gelcich, Stefan; Claudet, Joachim

2017-01-01

Mapping the spatial allocation of fishing effort while including key stakeholders in the decision making process is essential for effective fisheries management but is difficult to implement in complex small-scale fisheries that are diffuse, informal and multifaceted. Here we present a standardized but flexible approach that combines participatory mapping approaches (fishers’ spatial preference for fishing grounds, or fishing suitability) with socioeconomic approaches (spatial extrapolation of social surrogates, or fishing capacity) to generate a comprehensive map of predicted fishing effort. Using a real world case study, in Moorea, French Polynesia, we showed that high predicted fishing effort is not simply located in front of, or close to, main fishing villages with high dependence on marine resources; it also occurs where resource dependency is moderate and generally in near-shore areas and reef passages. The integrated approach we developed can contribute to addressing the recurrent lack of fishing effort spatial data through key stakeholders' (i.e., resource users) participation. It can be tailored to a wide range of social, ecological and data availability contexts, and should help improve place-based management of natural resources. PMID:28486509

Radioactive zinc ( sup 65 Zn), zinc, cadmium, and mercury in the Pacific Hake, Merluccius productus (Ayres), off the West Coast of the United States

DOE Office of Scientific and Technical Information (OSTI.GOV)

Naidu, J.R.

1974-06-01

The Pacific Hake, Merluccius productus (Ayers) was used to monitor the waters off Puget Sound and the West Coast of the US for zinc(Zn), cadmium(Cd), mercury(Hg) and {sup 65}Zn. The Columbia River is not the source of Zn, Cd or Hg contamination, but is the source of {sup 65}Zn, with the concentration in the Hake reflecting the position of the Columbia River plume. Zn and Cd accumulation in the Hake were fit to the equation Y=B{sub 1}+B{sub 2}e{sup B}{sub 3}X where Y is the concentration of the element and X is the length or weight of the fish. Biological attributesmore » were assigned to the other parameters as follows: B{sub 1} is the asymptotic value for Zn or Cd at chemical maturity; B{sub 2} is the location of the curve with respect to the length or weight of the fish; and B{sub 3} is a constant pertaining to the rate of change of Zn or Cd. Although Zn, Cd and Hg are all Group 2B elements, only the concentrations of Zn and Cd were correlated for all locations; Hg concentrations varied as a function of location. Zn and Cd concentrations increase with fish size and approach an asymptotic value at maturity, while Hg concentrations were linear and the slope is a function of sampling location. Zn and Cd levels are regulated in the adult, while Hg continues to increase with age. It may be significant that the age distribution of fish caught commercially coincides with the maximum concentration of Zn and Cd. 195 refs., 30 figs., 10 tabs. (MHB)« less

Ecotoxicity and risk to human fish consumers of polychlorinated biphenyls in fish near the Hanford Site (USA).

PubMed

Delistraty, Damon

2013-02-15

The purpose of this study was to quantify three groups of polychlorinated biphenyl (PCB) congeners (i.e., dioxin-like toxic equivalents [TEQ], non-dioxin-like PCBs, total PCBs) in fish in several species, tissues, and locations in the Columbia River near the Hanford Site. For TEQ and total PCBs, fish ecotoxicity and risk to human fish consumers were also evaluated. Non-dioxin-like PCBs were not assessed for toxicity, due to lack of available benchmarks. In sturgeon liver, TEQ was significantly higher (P<0.05) within the Hanford Site study areas, relative to upriver. However, this same spatial relationship in sturgeon liver did not attain statistical significance for non-dioxin-like PCBs and total PCBs. Non-dioxin-like PCBs and total PCBs were significantly higher (P<0.05) in whitefish fillet than in other species (except carp) and significantly higher (P<0.05) in carp fillet, relative to bass. All PCB residues in carcass were significantly elevated (P<0.005) in comparison to fillet. In addition to PCB source, many factors (e.g., dietary composition, tissue lipid content, fish mobility and home range, age, toxicokinetic processes, seasonal adaptations) influence patterns in PCB bioaccumulation across species, tissues, and locations. TEQ and total PCB residues in liver, fillet, and carcass, observed in this study, were below corresponding no effect residues for TEQ and Aroclors in the literature for fish survival, growth, and reproduction. In contrast, TEQ and total PCBs in fillet in this study exceeded USEPA tissue screening levels for cancer (1E-6 risk) and noncancer (hazard quotient [HQ]=1) toxicity for human fish consumers. Key uncertainties in these comparisons to assess toxicity relate to variation in fish species sensitivity to PCBs and use of Aroclor data in the literature to represent total PCBs. Copyright © 2012 Elsevier B.V. All rights reserved.

Sulfate transporters involved in sulfate secretion in the kidney are localized in the renal proximal tubule II of the elephant fish (Callorhinchus milii)

PubMed Central

Kato, Akira; Watanabe, Taro; Takagi, Wataru; Romero, Michael F.; Bell, Justin D.; Toop, Tes; Donald, John A.; Hyodo, Susumu

2016-01-01

Most vertebrates, including cartilaginous fishes, maintain their plasma SO42− concentration ([SO42−]) within a narrow range of 0.2–1 mM. As seawater has a [SO42−] about 40 times higher than that of the plasma, SO42− excretion is the major role of kidneys in marine teleost fishes. It has been suggested that cartilaginous fishes also excrete excess SO42− via the kidney. However, little is known about the underlying mechanisms for SO42− transport in cartilaginous fish, largely due to the extraordinarily elaborate four-loop configuration of the nephron, which consists of at least 10 morphologically distinguishable segments. In the present study, we determined cDNA sequences from the kidney of holocephalan elephant fish (Callorhinchus milii) that encoded solute carrier family 26 member 1 (Slc26a1) and member 6 (Slc26a6), which are SO42− transporters that are expressed in mammalian and teleost kidneys. Elephant fish Slc26a1 (cmSlc26a1) and cmSlc26a6 mRNAs were coexpressed in the proximal II (PII) segment of the nephron, which comprises the second loop in the sinus zone. Functional analyses using Xenopus oocytes and the results of immunohistochemistry revealed that cmSlc26a1 is a basolaterally located electroneutral SO42− transporter, while cmSlc26a6 is an apically located, electrogenic Cl−/SO42− exchanger. In addition, we found that both cmSlc26a1 and cmSlc26a6 were abundantly expressed in the kidney of embryos; SO42− was concentrated in a bladder-like structure of elephant fish embryos. Our results demonstrated that the PII segment of the nephron contributes to the secretion of excess SO42− by the kidney of elephant fish. Possible mechanisms for SO42− secretion in the PII segment are discussed. PMID:27122370

Prediction of fishing effort distributions using boosted regression trees.

PubMed

Soykan, Candan U; Eguchi, Tomoharu; Kohin, Suzanne; Dewar, Heidi

2014-01-01

Concerns about bycatch of protected species have become a dominant factor shaping fisheries management. However, efforts to mitigate bycatch are often hindered by a lack of data on the distributions of fishing effort and protected species. One approach to overcoming this problem has been to overlay the distribution of past fishing effort with known locations of protected species, often obtained through satellite telemetry and occurrence data, to identify potential bycatch hotspots. This approach, however, generates static bycatch risk maps, calling into question their ability to forecast into the future, particularly when dealing with spatiotemporally dynamic fisheries and highly migratory bycatch species. In this study, we use boosted regression trees to model the spatiotemporal distribution of fishing effort for two distinct fisheries in the North Pacific Ocean, the albacore (Thunnus alalunga) troll fishery and the California drift gillnet fishery that targets swordfish (Xiphias gladius). Our results suggest that it is possible to accurately predict fishing effort using < 10 readily available predictor variables (cross-validated correlations between model predictions and observed data -0.6). Although the two fisheries are quite different in their gears and fishing areas, their respective models had high predictive ability, even when input data sets were restricted to a fraction of the full time series. The implications for conservation and management are encouraging: Across a range of target species, fishing methods, and spatial scales, even a relatively short time series of fisheries data may suffice to accurately predict the location of fishing effort into the future. In combination with species distribution modeling of bycatch species, this approach holds promise as a mitigation tool when observer data are limited. Even in data-rich regions, modeling fishing effort and bycatch may provide more accurate estimates of bycatch risk than partial observer coverage for fisheries and bycatch species that are heavily influenced by dynamic oceanographic conditions.

Numerical modelling of organic waste dispersion from fjord located fish farms

NASA Astrophysics Data System (ADS)

Ali, Alfatih; Thiem, Øyvind; Berntsen, Jarle

2011-07-01

In this study, a three-dimensional particle tracking model coupled to a terrain following ocean model is used to investigate the dispersion and the deposition of fish farm particulate matter (uneaten food and fish faeces) on the seabed due to tidal currents. The particle tracking model uses the computed local flow field for advection of the particles and random movement to simulate the turbulent diffusion. Each particle is given a settling velocity which may be drawn from a probability distribution according to settling velocity measurements of faecal and feed pellets. The results show that the maximum concentration of organic waste for fast sinking particles is found under the fish cage and continue monotonically decreasing away from the cage area. The maximum can split into two maximum peaks located at both sides of the centre of the fish cage area in the current direction. This process depends on the sinking time (time needed for a particle to settle at the bottom), the tidal velocity and the fish cage size. If the sinking time is close to a multiple of the tidal period, the maximum concentration point will be under the fish cage irrespective of the tide strength. This is due to the nature of the tidal current first propagating the particles away and then bringing them back when the tide reverses. Increasing the cage size increases the likelihood for a maximum waste accumulation beneath the fish farm, and larger farms usually means larger biomasses which can make the local pollution even more severe. The model is validated by using an analytical model which uses an exact harmonic representation of the tidal current, and the results show an excellent agreement. This study shows that the coupled ocean and particle model can be used in more realistic applications to help estimating the local environmental impact due to fish farms.

Temporal dynamics of fish communities on an exposed shoreline in Hawaii

USGS Publications Warehouse

Friedlander, A.M.; Parrish, J.D.

1998-01-01

Environmental conditions on higher latitude coral reefs can be extremely variable, and may structure fish communities in ways not previously observed in the more stable, low latitude locations where communities have usually been studied. Temporal changes in fish community structure were examined in an intensive two-year study of the reef fishes of Hanalei Bay, Kauai, Hawaii. Hanalei Bay is directly exposed to winter swells with high surf, as well as frequent heavy winter rainfall and high river discharge. Twenty-two transects (25 x 5 m) were established in a wide variety of habitats and censused monthly (N = 1052 censuses). Over 121 000 sightings of individuals from 150 species were made during the study. Seasonal patterns in number of species, number of individuals, species diversity, and evenness were observed, with winter values usually lowest. Values of these ensemble variables tended to be higher at deeper sites and at sites with greater habitat complexity. Surf height and degree of wave exposure were negatively correlated with several measures of community organization. Groups of fishes with different levels of spatial mobility tended to occupy depths consistent with their various abilities to respond to events of heavy weather. The rank abundance of fish taxa tended to be more stable seasonally at sites with less exposure to high wave energy. These seasonal effects may suggest some type of short-range movement from more exposed and monotypic habitats to locations that are deeper or otherwise provide refuge from seasonally heavy seas.

Regional patterns of mercury content in snowpack, sphagnum, and fish in northeastern North America

DOE Office of Scientific and Technical Information (OSTI.GOV)

Haines, T.; Mower, B.; Perry, R.

1995-12-31

High levels of mercury have been found in fish from lakes throughout the northeastern US and eastern Canada, in waters with no known local mercury source. If this mercury originates from anthropogenic emissions to the atmosphere, deposition should be higher near population centers or other point sources. The authors surveyed the mercury content of late-season snowpack, sphagnum moss, and fish at locations from southwestern Connecticut to northern Newfoundland to determine if such a pattern existed. Mercury in snow ranged 1.5 to 20 ng/L, and in sphagnum < 24 to 289 ng/g dry wt. Concentrations were generally highest at southwestern sitesmore » and lowest at northeastern sites with some exceptions. The highest concentrations in both media were at locations in Rhode Island and New Hampshire, and may reflect local source emissions. Excluding these sites, the range in concentration from south to north is only a factor of two or three. These values are similar to those reported in other areas and reflect the long atmospheric residence time of gaseous elemental mercury. Mercury concentration in fish ranged 0.1 to 1.0 ug/g wet wt. and showed no regional pattern. Rather, fish mercury concentration was affected by fish species and size, being highest in large predatory species such as smallmouth bass (Micropterus dolomieu), and lowest in small nonpredatory species such as yellow perch (Perca flavescens) and brook trout (Salvelinus fontinalis).« less

Habitats as Surrogates of Taxonomic and Functional Fish Assemblages in Coral Reef Ecosystems: A Critical Analysis of Factors Driving Effectiveness

PubMed Central

Van Wynsberge, Simon; Andréfouët, Serge; Hamel, Mélanie A.; Kulbicki, Michel

2012-01-01

Species check-lists are helpful to establish Marine Protected Areas (MPAs) and protect local richness, endemicity, rarity, and biodiversity in general. However, such exhaustive taxonomic lists (i.e., true surrogate of biodiversity) require extensive and expensive censuses, and the use of estimator surrogates (e.g., habitats) is an appealing alternative. In truth, surrogate effectiveness appears from the literature highly variable both in marine and terrestrial ecosystems, making it difficult to provide practical recommendations for managers. Here, we evaluate how the biodiversity reference data set and its inherent bias can influence effectiveness. Specifically, we defined habitats by geomorphology, rugosity, and benthic cover and architecture criteria, and mapped them with satellite images for a New-Caledonian site. Fish taxonomic and functional lists were elaborated from Underwater Visual Censuses, stratified according to geomorphology and exposure. We then tested if MPA networks designed to maximize habitat richness, diversity and rarity could also effectively maximize fish richness, diversity, and rarity. Effectiveness appeared highly sensitive to the fish census design itself, in relation to the type of habitat map used and the scale of analysis. Spatial distribution of habitats (estimator surrogate’s distribution), quantity and location of fish census stations (target surrogate’s sampling), and random processes in the MPA design all affected effectiveness to the point that one small change in the data set could lead to opposite conclusions. We suggest that previous conclusions on surrogacy effectiveness, either positive or negative, marine or terrestrial, should be considered with caution, except in instances where very dense data sets were used without pseudo-replication. Although this does not rule out the validity of using surrogates of species lists for conservation planning, the critical joint examination of both target and estimator surrogates is needed for every case study. PMID:22815891

FISH-BOL and seafood identification: geographically dispersed case studies reveal systemic market substitution across Canada.

PubMed

Hanner, Robert; Becker, Sven; Ivanova, Natalia V; Steinke, Dirk

2011-10-01

The Fish Barcode of Life campaign involves a broad international collaboration among scientists working to advance the identification of fishes using DNA barcodes. With over 25% of the world's known ichthyofauna currently profiled, forensic identification of seafood products is now feasible and is becoming routine. Driven by growing consumer interest in the food supply, investigative reporters from five different media establishments procured seafood samples (n = 254) from numerous retail establishments located among five Canadian metropolitan areas between 2008 and 2010. The specimens were sent to the Canadian Centre for DNA Barcoding for analysis. By integrating the results from these individual case studies in a summary analysis, we provide a broad perspective on seafood substitution across Canada. Barcodes were recovered from 93% of the samples (n = 236), and identified using the Barcode of Life Data Systems "species identification" engine ( www.barcodinglife.org ). A 99% sequence similarity threshold was employed as a conservative matching criterion for specimen identification to the species level. Comparing these results against the Canadian Food Inspection Agency's "Fish List" a guideline to interpreting "false, misleading or deceptive" names (as per s 27 of the Fish Inspection regulations) demonstrated that 41% of the samples were mislabeled. Most samples were readily identified; however, this was not true in all cases because some samples had no close match. Others were ambiguous due to limited barcode resolution (or imperfect taxonomy) observed within a few closely related species complexes. The latter cases did not significantly impact the results because even the partial resolution achieved was sufficient to demonstrate mislabeling. This work highlights the functional utility of barcoding for the identification of diverse market samples. It also demonstrates how barcoding serves as a bridge linking scientific nomenclature with approved market names, potentially empowering regulatory bodies to enforce labeling standards. By synchronizing taxonomic effort with sequencing effort and database curation, barcoding provides a molecular identification resource of service to applied forensics.

Developing a top-down land-use management procedure for fish habitat enhancement

NASA Astrophysics Data System (ADS)

Chiang, Li-Chi; Lin, Yu-Pin; Wu, Chen-Huan

2013-04-01

Land-use change can influence stream ecosystem and alter instream physical, chemical and biological habitat. For example, urbanization usually contributes to increasing sediment loadings to streams and inappropriate agricultural management results in degradation of stream water quality. Watershed model is an effective way to forecast the watershed response to different land-use change scenarios. We developed a top-down approach from the watershed scale to the microscale by combining the habitat model, land-use change model and watershed hydrological model. This approach can assist land-use planner to make optimal decisions with fish habitat enhancement. The study was conducted in Datuan Stream, located in Tamsui District, New Taipei City and the target species is monk goby (Sicyopterus japonicus). The spatially explicit land-use change model, CLUE-s was first applied to project several future land-use scenarios and the Soil and Water Assessment Tool (SWAT) was then applied to simulate streamflow for different land-use scenarios. The simulated streamflow were used as input data for simulating river habitat, where Habitat Suitability Analysis is one of the most important processes. The relationship between target species and multiple environmental factors of habitat was first developed using the Habitat suitability index (HSI). In this study, we used fish presence probabilities for each velocity and water depth to establish different HSI functions under 4 flow conditions (slack, riffle, pool and run) using genetic programming (GP). The physical habitat model, River 2D, was then applied to simulate the river section and calculate weighted usable area (WUA). Based on the WUA results for different land-use scenarios, we further evaluated the relationships between WUA and land-use/landscape patterns using a spatial pattern analysis program, Fragstats. The results showed that by using the habitat model for classified flows, the habitat suitability curve which reflects different activities of fish (ex: spawning, preying) is more practical. Moreover, the proposed land-use management procedure can be useful for future land-use planning with fish habitat conservation.

78 FR 12346 - Jennings Low-Effect Habitat Conservation Plan for the Morro Shoulderband Snail, Community of Los...

Federal Register 2010, 2011, 2012, 2013, 2014

2013-02-22

... Fish and Wildlife Office, U.S. Fish and Wildlife Service, 2493 Portola Road, Suite B, Ventura, CA 93003... the following activities: ``to harass, harm, pursue, hunt, shoot, wound, kill, trap, capture, or... located at 460 Los Osos Valley Road in western portion of Los Osos, an unincorporated community of San...

75 FR 5114 - Desert National Wildlife Refuge Complex, Clark, Lincoln, and Nye Counties, NV

Federal Register 2010, 2011, 2012, 2013, 2014

2010-02-01

... DEPARTMENT OF THE INTERIOR Fish and Wildlife Service [FWS-R8-R-2009-N222; 80230-1265-0000-S3] Desert National Wildlife Refuge Complex, Clark, Lincoln, and Nye Counties, NV AGENCY: Fish and Wildlife.... The Wildlife Refuge is located on 116 acres in northeastern Clark County. Due to its small size...

U.S. Fish and Wildlife Service Moves toward Net-Zero Buildings

DOE Office of Scientific and Technical Information (OSTI.GOV)

None

First they had a vision: welcome people into a building embracing environmental stewardship on land that is steeped in history. The designers of the U.S. Fish and Wildlife Service took this vision and designed a new energy-efficient and environmentally friendly visitor center for the Assabet River National Wildlife Refuge located in Sudbury, Massachusetts.

WATER-ROCK INTERACTIONS INFLUENCING MERCURY FATE AND TRANSPORT FROM AN ABANDONED MINE SITE TO AN ADJACENT AQUATIC ECOSYSTEM

EPA Science Inventory

Clear Lake, located 150 km north of San Francisco, is one of the largest fresh water lakes in California and is an important economic resource for the region. Elevated mercury levels in fish in Clear Lake were identified in the late 1970s, resulting in a fish consumption advisor...

DNA DAMAGE AND VITELLOGENIN RESPONSES IN FERAL FISH EXPOSED TO URBANIZATION AND WASTE WATER TREATMENT EFFLUENT IN SOUTH CAROLINA, USA

EPA Science Inventory

This study was designed to look at the impact of urbanization and a wastewater treatment plant (WWTP) by using field-collected bluegill (Lepomis machrochkrus). Fish were collected from four locations in the same river: above city (reference); below city and above the WWTP; direc...

21 CFR 172.340 - Fish protein isolate.

Code of Federal Regulations, 2014 CFR

2014-04-01

... 21 Food and Drugs 3 2014-04-01 2014-04-01 false Fish protein isolate. 172.340 Section 172.340 Food.../federal_register/code_of_federal_regulations/ibr_locations.html. (1) Protein content, as N × 6.25, shall... described in section 24.003, Air Drying (1)—Official First Action. (3) Fat content shall not be more than 0...