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Sample records for five-axis cnc flank

  1. Five-Axis Ultrasonic Additive Manufacturing for Nuclear Component Manufacture

    NASA Astrophysics Data System (ADS)

    Hehr, Adam; Wenning, Justin; Terrani, Kurt; Babu, Sudarsanam Suresh; Norfolk, Mark

    2016-12-01

    Ultrasonic additive manufacturing (UAM) is a three-dimensional metal printing technology which uses high-frequency vibrations to scrub and weld together both similar and dissimilar metal foils. There is no melting in the process and no special atmosphere requirements are needed. Consequently, dissimilar metals can be joined with little to no intermetallic compound formation, and large components can be manufactured. These attributes have the potential to transform manufacturing of nuclear reactor core components such as control elements for the High Flux Isotope Reactor at Oak Ridge National Laboratory. These components are hybrid structures consisting of an outer cladding layer in contact with the coolant with neutron-absorbing materials inside, such as neutron poisons for reactor control purposes. UAM systems are built into a computer numerical control (CNC) framework to utilize intermittent subtractive processes. These subtractive processes are used to introduce internal features as the component is being built and for net shaping. The CNC framework is also used for controlling the motion of the welding operation. It is demonstrated here that curved components with embedded features can be produced using a five-axis code for the welder for the first time.

  2. Five-axis ultrasonic additive manufacturing for nuclear component manufacture

    SciTech Connect

    Hehr, Adam; Wenning, Justin; Terrani, Kurt A.; Babu, Sudarsanam Suresh; Norfolk, Mark

    2016-01-01

    Ultrasonic additive manufacturing (UAM) is a three-dimensional metal printing technology which uses high-frequency vibrations to scrub and weld together both similar and dissimilar metal foils. There is no melting in the process and no special atmosphere requirements are needed. Consequently, dissimilar metals can be joined with little to no intermetallic compound formation, and large components can be manufactured. These attributes have the potential to transform manufacturing of nuclear reactor core components such as control elements for the High Flux Isotope Reactor at Oak Ridge National Laboratory. These components are hybrid structures consisting of an outer cladding layer in contact with the coolant with neutron-absorbing materials inside, such as neutron poisons for reactor control purposes. UAM systems are built into a computer numerical control (CNC) framework to utilize intermittent subtractive processes. These subtractive processes are used to introduce internal features as the component is being built and for net shaping. The CNC framework is also used for controlling the motion of the welding operation. Lastly, it is demonstrated here that curved components with embedded features can be produced using a five-axis code for the welder for the first time.

  3. Five-axis ultrasonic additive manufacturing for nuclear component manufacture

    DOE PAGES

    Hehr, Adam; Wenning, Justin; Terrani, Kurt A.; ...

    2016-01-01

    Ultrasonic additive manufacturing (UAM) is a three-dimensional metal printing technology which uses high-frequency vibrations to scrub and weld together both similar and dissimilar metal foils. There is no melting in the process and no special atmosphere requirements are needed. Consequently, dissimilar metals can be joined with little to no intermetallic compound formation, and large components can be manufactured. These attributes have the potential to transform manufacturing of nuclear reactor core components such as control elements for the High Flux Isotope Reactor at Oak Ridge National Laboratory. These components are hybrid structures consisting of an outer cladding layer in contact withmore » the coolant with neutron-absorbing materials inside, such as neutron poisons for reactor control purposes. UAM systems are built into a computer numerical control (CNC) framework to utilize intermittent subtractive processes. These subtractive processes are used to introduce internal features as the component is being built and for net shaping. The CNC framework is also used for controlling the motion of the welding operation. Lastly, it is demonstrated here that curved components with embedded features can be produced using a five-axis code for the welder for the first time.« less

  4. Five-Axis Ultrasonic Additive Manufacturing for Nuclear Component Manufacture

    NASA Astrophysics Data System (ADS)

    Hehr, Adam; Wenning, Justin; Terrani, Kurt; Babu, Sudarsanam Suresh; Norfolk, Mark

    2017-03-01

    Ultrasonic additive manufacturing (UAM) is a three-dimensional metal printing technology which uses high-frequency vibrations to scrub and weld together both similar and dissimilar metal foils. There is no melting in the process and no special atmosphere requirements are needed. Consequently, dissimilar metals can be joined with little to no intermetallic compound formation, and large components can be manufactured. These attributes have the potential to transform manufacturing of nuclear reactor core components such as control elements for the High Flux Isotope Reactor at Oak Ridge National Laboratory. These components are hybrid structures consisting of an outer cladding layer in contact with the coolant with neutron-absorbing materials inside, such as neutron poisons for reactor control purposes. UAM systems are built into a computer numerical control (CNC) framework to utilize intermittent subtractive processes. These subtractive processes are used to introduce internal features as the component is being built and for net shaping. The CNC framework is also used for controlling the motion of the welding operation. It is demonstrated here that curved components with embedded features can be produced using a five-axis code for the welder for the first time.

  5. Critical Technology Assessment of Five Axis Simultaneous Control Machine Tools

    DTIC Science & Technology

    2009-07-01

    assessment, BIS specifically examined: • The application of Export Control Classification Numbers ( ECCN ) 2B001.b.2 and 2B001.c.2 controls and related...availability of certain five axis simultaneous control mills, mill/turns, and machining centers controlled by ECCN 2B001.b.2 (but not grinders controlled by... ECCN 2B001.c.2) exists to China and Taiwan, which both have an indigenous capability to produce five axis simultaneous control machine tools with

  6. Five-Axis Machine Tool Condition Monitoring Using dSPACE Real-Time System

    NASA Astrophysics Data System (ADS)

    Sztendel, S.; Pislaru, C.; Longstaff, A. P.; Fletcher, S.; Myers, A.

    2012-05-01

    This paper presents the design, development and SIMULINK implementation of the lumped parameter model of C-axis drive from GEISS five-axis CNC machine tool. The simulated results compare well with the experimental data measured from the actual machine. Also the paper describes the steps for data acquisition using ControlDesk and hardware-in-the-loop implementation of the drive models in dSPACE real-time system. The main components of the HIL system are: the drive model simulation and input - output (I/O) modules for receiving the real controller outputs. The paper explains how the experimental data obtained from the data acquisition process using dSPACE real-time system can be used for the development of machine tool diagnosis and prognosis systems that facilitate the improvement of maintenance activities.

  7. Five-Axis, Three-Magnetic-Bearing Dynamic Spin Rig

    NASA Technical Reports Server (NTRS)

    Morrison, Carlos R.; Provenza, Andrew; Kurkov, Anatole; Mehmed, Oral; Johnson, Dexter; Montague, Gerald; Duffy, Kirsten; Jansen, Ralph

    2005-01-01

    The Five-Axis, Three-Magnetic-Bearing Dynamic Spin Rig is an apparatus for vibration testing of turbomachine blades in a vacuum at rotational speeds from 0 to 40,000 rpm. This rig includes (1) a vertically oriented shaft on which is mounted an assembly comprising a rotor holding the blades to be tested, (2) two actively controlled heteropolar radial magnetic bearings at opposite ends of the shaft, and (3) an actively controlled magnetic thrust bearing at the upper end of the shaft. This rig is a more capable successor to a prior apparatus, denoted the Dynamic Spin Rig (DSR), that included a vertically oriented shaft with a mechanical thrust bearing at the upper end and a single actively controlled heteropolar radial magnetic bearing at the lower end.

  8. Flank pain

    MedlinePlus

    Pain - side; Side pain ... Flank pain can be a sign of a kidney problem. But, since many organs are in this area, other causes are possible. If you have flank pain and fever , chills, blood in the urine, or ...

  9. Identification of kinematic errors of five-axis machine tool trunnion axis from finished test piece

    NASA Astrophysics Data System (ADS)

    Zhang, Ya; Fu, Jianzhong; Chen, Zichen

    2014-09-01

    Compared with the traditional non-cutting measurement, machining tests can more accurately reflect the kinematic errors of five-axis machine tools in the actual machining process for the users. However, measurement and calculation of the machining tests in the literature are quite difficult and time-consuming. A new method of the machining tests for the trunnion axis of five-axis machine tool is proposed. Firstly, a simple mathematical model of the cradle-type five-axis machine tool was established by optimizing the coordinate system settings based on robot kinematics. Then, the machining tests based on error-sensitive directions were proposed to identify the kinematic errors of the trunnion axis of cradle-type five-axis machine tool. By adopting the error-sensitive vectors in the matrix calculation, the functional relationship equations between the machining errors of the test piece in the error-sensitive directions and the kinematic errors of C-axis and A-axis of five-axis machine tool rotary table was established based on the model of the kinematic errors. According to our previous work, the kinematic errors of C-axis can be treated as the known quantities, and the kinematic errors of A-axis can be obtained from the equations. This method was tested in Mikron UCP600 vertical machining center. The machining errors in the error-sensitive directions can be obtained by CMM inspection from the finished test piece to identify the kinematic errors of five-axis machine tool trunnion axis. Experimental results demonstrated that the proposed method can reduce the complexity, cost, and the time consumed substantially, and has a wider applicability. This paper proposes a new method of the machining tests for the trunnion axis of five-axis machine tool.

  10. A Five-Axis Robotic Laser And Vision Integrated "On-Line" Welding System

    NASA Astrophysics Data System (ADS)

    Uddin, M. N.; Berardi, Elvio; DuCharme, R. C.; Salada, D. A.; Speranza, J. J.

    1986-11-01

    A five axis robotic laser welding system has been designed and built for an "on-line" automotive joining application. A high power CO2 laser beam is manipulated through the use of a robotic beam delivery system and is focused onto the work piece. An optical probe communicates the coordinates or geometry of the parts to the clamping and welding robots. The essential features of the robots, laser, optical probes and clamping system have been discussed. The system versatilities also have been outlined.

  11. CNC Programming I.

    ERIC Educational Resources Information Center

    Casey, Joe

    This document contains five units for a course in computer numerical control (CNC) for computer-aided manufacturing. It is intended to familiarize students with the principles and techniques necessary to create proper CNC programs manually. Each unit consists of an introduction, instructional objectives, learning materials, learning activities,…

  12. Carney complex (CNC)

    PubMed Central

    Bertherat, Jérôme

    2006-01-01

    The Carney complex (CNC) is a dominantly inherited syndrome characterized by spotty skin pigmentation, endocrine overactivity and myxomas. Skin pigmentation anomalies include lentigines and blue naevi. The most common endocrine gland manifestations are acromegaly, thyroid and testicular tumors, and adrenocorticotropic hormone (ACTH)-independent Cushing's syndrome due to primary pigmented nodular adrenocortical disease (PPNAD). PPNAD, a rare cause of Cushing's syndrome, is due to primary bilateral adrenal defect that can be also observed in some patients without other CNC manifestations or familial history of the disease. Myxomas can be observed in the heart, skin and breast. Cardiac myxomas can develop in any cardiac chamber and may be multiple. One of the putative CNC genes located on 17q22-24, (PRKAR1A), has been identified to encode the regulatory subunit (R1A) of protein kinase A. Heterozygous inactivating mutations of PRKAR1A were reported initially in 45 to 65 % of CNC index cases, and may be present in about 80 % of the CNC families presenting mainly with Cushing's syndrome. PRKAR1A is a key component of the cAMP signaling pathway that has been implicated in endocrine tumorigenesis and could, at least partly, function as a tumor suppressor gene. Genetic analysis should be proposed to all CNC index cases. Patients with CNC or with a genetic predisposition to CNC should have regular screening for manifestations of the disease. Clinical work-up for all the manifestations of CNC should be performed at least once a year in all patients and should start in infancy. Cardiac myxomas require surgical removal. Treatment of the other manifestations of CNC should be discussed and may include follow-up, surgery, or medical treatment depending on the location of the tumor, its size, the existence of clinical signs of tumor mass or hormonal excess, and the suspicion of malignancy. Bilateral adrenalectomy is the most common treatment for Cushing's syndrome due to PPNAD

  13. CAD/CAM/CNC.

    ERIC Educational Resources Information Center

    Domermuth, Dave; And Others

    1996-01-01

    Includes "Quick Start CNC (computer numerical control) with a Vacuum Filter and Laminated Plastic" (Domermuth); "School and Industry Cooperate for Mutual Benefit" (Buckler); and "CAD (computer-assisted drafting) Careers--What Professionals Have to Say" (Skinner). (JOW)

  14. Spindle Thermal Error Optimization Modeling of a Five-axis Machine Tool

    NASA Astrophysics Data System (ADS)

    Guo, Qianjian; Fan, Shuo; Xu, Rufeng; Cheng, Xiang; Zhao, Guoyong; Yang, Jianguo

    2017-03-01

    Aiming at the problem of low machining accuracy and uncontrollable thermal errors of NC machine tools, spindle thermal error measurement, modeling and compensation of a two turntable five-axis machine tool are researched. Measurement experiment of heat sources and thermal errors are carried out, and GRA(grey relational analysis) method is introduced into the selection of temperature variables used for thermal error modeling. In order to analyze the influence of different heat sources on spindle thermal errors, an ANN (artificial neural network) model is presented, and ABC(artificial bee colony) algorithm is introduced to train the link weights of ANN, a new ABC-NN(Artificial bee colony-based neural network) modeling method is proposed and used in the prediction of spindle thermal errors. In order to test the prediction performance of ABC-NN model, an experiment system is developed, the prediction results of LSR (least squares regression), ANN and ABC-NN are compared with the measurement results of spindle thermal errors. Experiment results show that the prediction accuracy of ABC-NN model is higher than LSR and ANN, and the residual error is smaller than 3 μm, the new modeling method is feasible. The proposed research provides instruction to compensate thermal errors and improve machining accuracy of NC machine tools.

  15. Fully Suspended, Five-Axis, Three-Magnetic-Bearing Dynamic Spin Rig With Forced Excitation

    NASA Technical Reports Server (NTRS)

    Morrison, Carlos R.; Provenza, Andrew; Kurkov, Anatole; Montague, Gerald; Duffy, Kirsten; Mehmed, Oral; Johnson, Dexter; Jansen, Ralph

    2004-01-01

    The Five-Axis, Three-Magnetic-Bearing Dynamic Spin Rig, a significant advancement in the Dynamic Spin Rig (DSR), is used to perform vibration tests of turbomachinery blades and components under rotating and nonrotating conditions in a vacuum. The rig has as its critical components three magnetic bearings: two heteropolar radial active magnetic bearings and a magnetic thrust bearing. The bearing configuration allows full vertical rotor magnetic suspension along with a feed-forward control feature, which will enable the excitation of various natural blade modes in bladed disk test articles. The theoretical, mechanical, electrical, and electronic aspects of the rig are discussed. Also presented are the forced-excitation results of a fully levitated, rotating and nonrotating, unbladed rotor and a fully levitated, rotating and nonrotating, bladed rotor in which a pair of blades was arranged 180 degrees apart from each other. These tests include the bounce mode excitation of the rotor in which the rotor was excited at the blade natural frequency of 144 Hz. The rotor natural mode frequency of 355 Hz was discerned from the plot of acceleration versus frequency. For nonrotating blades, a blade-tip excitation amplitude of approximately 100 g/A was achieved at the first-bending critical (approximately 144 Hz) and at the first-torsional and second-bending blade modes. A blade-tip displacement of 70 mils was achieved at the first-bending critical by exciting the blades at a forced-excitation phase angle of 908 relative to the vertical plane containing the blades while simultaneously rotating the shaft at 3000 rpm.

  16. Position-independent geometric error identification and global sensitivity analysis for the rotary axes of five-axis machine tools

    NASA Astrophysics Data System (ADS)

    Guo, Shijie; Jiang, Gedong; Zhang, Dongsheng; Mei, Xuesong

    2017-04-01

    Position-independent geometric errors (PIGEs) are the fundamental errors of a five-axis machine tool. In this paper, to identify ten PIGEs peculiar to the rotary axes of five-axis machine tools with a tilting head, the mathematic model of the ten PIGEs is deduced and four measuring patterns are proposed. The measuring patterns and identifying method are validated on a five-axis machine tool with a tilting head, and the ten PIGEs of the machine tool are obtained. The sensitivities of the four adjustable PIGEs of the machine tool in different measuring patterns are analyzed by the Morris global sensitivity analysis method and the modifying method, and the procedure of the four adjustable PIGEs of the machine tool is given accordingly. Experimental results show that after and before modifying the four adjustable PIGEs, the average compensate rate reached 52.7%. It is proved that the proposed measuring, identifying, analyzing and modifying method are effective for error measurement and precision improvement of the five-axis machine tool.

  17. Accurate identification and compensation of geometric errors of 5-axis CNC machine tools using double ball bar

    NASA Astrophysics Data System (ADS)

    Lasemi, Ali; Xue, Deyi; Gu, Peihua

    2016-05-01

    Five-axis CNC machine tools are widely used in manufacturing of parts with free-form surfaces. Geometric errors of machine tools have significant effects on the quality of manufactured parts. This research focuses on development of a new method to accurately identify geometric errors of 5-axis CNC machines, especially the errors due to rotary axes, using the magnetic double ball bar. A theoretical model for identification of geometric errors is provided. In this model, both position-independent errors and position-dependent errors are considered as the error sources. This model is simplified by identification and removal of the correlated and insignificant error sources of the machine. Insignificant error sources are identified using the sensitivity analysis technique. Simulation results reveal that the simplified error identification model can result in more accurate estimations of the error parameters. Experiments on a 5-axis CNC machine tool also demonstrate significant reduction in the volumetric error after error compensation.

  18. Flank solar wind interaction

    NASA Technical Reports Server (NTRS)

    Moses, Stewart L.; Greenstadt, Eugene W.

    1992-01-01

    This report summarizes the results of the first 12 months of our program to study the interaction of the Earth's magnetosphere with the solar wind on the far flanks of the bow shock. This study employs data from the ISEE-3 spacecraft during its traversals of the Earth's magnetotail and correlative data from spacecraft monitoring the solar wind upstream. Our main effort to date has involved assembling data sets and developing new plotting programs. Two talks were given at the Spring Meeting of the American Geophysical Union describing our initial results from analyzing data from the far flank foreshock and magnetosheath. The following sections summarize our results.

  19. CNC Preparation Meets Manufacturing Opportunity

    ERIC Educational Resources Information Center

    Cassola, Joel

    2006-01-01

    This article features the machining technology program at Cape Fear Community College (CFCC) of Wilmington, North Carolina. North Carolina's Cape Fear Community College is working to meet diverse industry needs through its CNC training. The school's program has gained the attention of the local manufacturing community and students when it shifted…

  20. Flank solar wind interaction

    NASA Technical Reports Server (NTRS)

    Moses, Stewart L.; Greenstadt, Eugene W.; Coroniti, Ferdinand V.

    1994-01-01

    In this report we will summarize the results of the work performed under the 'Flank Solar Wind Interaction' investigation in support of NASA's Space Physics Guest Investigator Program. While this investigation was focused on the interaction of the Earth's magnetosphere with the solar wind as observed by instruments on the International Sun-Earth Explorer (ISEE) 3 spacecraft, it also represents the culmination of decades of research performed by scientists at TRW on the rich phenomenology of collisionless shocks in space.

  1. CNC electrical discharge machining centers

    SciTech Connect

    Jaggars, S.R.

    1991-10-01

    Computer numerical control (CNC) electrical discharge machining (EDM) centers were investigated to evaluate the application and cost effectiveness of establishing this capability at Allied-Signal Inc., Kansas City Division (KCD). In line with this investigation, metal samples were designed, prepared, and machined on an existing 15-year-old EDM machine and on two current technology CNC EDM machining centers at outside vendors. The results were recorded and evaluated. The study revealed that CNC EDM centers are a capability that should be established at KCD. From the information gained, a machine specification was written and a shop was purchased and installed in the Engineering Shop. The older machine was exchanged for a new model. Additional machines were installed in the Tool Design and Fabrication and Precision Microfinishing departments. The Engineering Shop machine will be principally used for the following purposes: producing deep cavities in small corner radii, machining simulated casting models, machining difficult-to-machine materials, and polishing difficult-to-hand polish mold cavities. 2 refs., 18 figs., 3 tabs.

  2. Synthetical Reliability Analysis Model of CNC Software System

    NASA Astrophysics Data System (ADS)

    Xu, Yue; Xia, Yinjie; Wan, Yi

    CNC technology is the core of advanced manufacturing technology, and CNC software system is the very important part of numerical control system. The entire CNC system will not work normally, once the potential failure makes the software invalid. As to the current study of CNC sysytem, in use of the FAULT glitch tree, established a glitch tree for the CNC system; find the minimum cut sets with Fussed method and then according to the probability of several common glitches, make quantitative analysis in the reliability of the CNC system so that scientific ways can be provided for the reliability design, maintenance and management of the CNC system.

  3. Improving Energy Efficiency in CNC Machining

    NASA Astrophysics Data System (ADS)

    Pavanaskar, Sushrut S.

    We present our work on analyzing and improving the energy efficiency of multi-axis CNC milling process. Due to the differences in energy consumption behavior, we treat 3- and 5-axis CNC machines separately in our work. For 3-axis CNC machines, we first propose an energy model that estimates the energy requirement for machining a component on a specified 3-axis CNC milling machine. Our model makes machine-specific predictions of energy requirements while also considering the geometric aspects of the machining toolpath. Our model - and the associated software tool - facilitate direct comparison of various alternative toolpath strategies based on their energy-consumption performance. Further, we identify key factors in toolpath planning that affect energy consumption in CNC machining. We then use this knowledge to propose and demonstrate a novel toolpath planning strategy that may be used to generate new toolpaths that are inherently energy-efficient, inspired by research on digital micrography -- a form of computational art. For 5-axis CNC machines, the process planning problem consists of several sub-problems that researchers have traditionally solved separately to obtain an approximate solution. After illustrating the need to solve all sub-problems simultaneously for a truly optimal solution, we propose a unified formulation based on configuration space theory. We apply our formulation to solve a problem variant that retains key characteristics of the full problem but has lower dimensionality, allowing visualization in 2D. Given the complexity of the full 5-axis toolpath planning problem, our unified formulation represents an important step towards obtaining a truly optimal solution. With this work on the two types of CNC machines, we demonstrate that without changing the current infrastructure or business practices, machine-specific, geometry-based, customized toolpath planning can save energy in CNC machining.

  4. Entering the operative correction machining processes CNC

    NASA Astrophysics Data System (ADS)

    Nekrasov, R. Yu; Starikov, A. I.; Lasukov, A. A.

    2015-09-01

    The article describes the solution to the problem of compensation of errors occurring during machining on CNC machines. We propose a method of mathematical modeling of processes diagnostics and control of technological equipment. The results of the diagnosis of the CNC machine, as well as the mathematical model describing the dependence of the positioning error of the executive bodies of operating component of cutting force PZ, in the range of movement OX.

  5. Five-Axis Goniometric Stage

    DTIC Science & Technology

    2011-02-01

    AZ Motor Phase BP2-7 AZ Motor Phase AP2-8 AZ Limit Rev 1P2-9 AZ Limit Rev 2P2-10 AZ Limit For 1P2-11 AZ Limit For 2P2-12 AZ Motor Phase CP2 -6 AZ...Motor Hall AP2-5 AZ Motor Hall BP2-4 AZ Motor Hall CP2 -3 AZ Motor Hall GNDP2-2 AZ Motor Hall VcP2-1 EL Motor Hall VcP1-1 EL Motor Hall GNDP1-2 EL Motor

  6. Review on CNC-Rapid Prototyping

    NASA Astrophysics Data System (ADS)

    Z, M. Nafis O.; Y, Nafrizuan M.; A, Munira M.; J, Kartina

    2012-09-01

    This article reviewed developments of Computerized Numerical Control (CNC) technology in rapid prototyping process. Rapid prototyping (RP) can be classified into three major groups; subtractive, additive and virtual. CNC rapid prototyping is grouped under the subtractive category which involves material removal from the workpiece that is larger than the final part. Richard Wysk established the use of CNC machines for rapid prototyping using sets of 2½-D tool paths from various orientations about a rotary axis to machine parts without refixturing. Since then, there are few developments on this process mainly aimed to optimized the operation and increase the process capabilities to stand equal with common additive type of RP. These developments include the integration between machining and deposition process (hybrid RP), adoption of RP to the conventional machine and optimization of the CNC rapid prototyping process based on controlled parameters. The article ended by concluding that the CNC rapid prototyping research area has a vast space for improvement as in the conventional machining processes. Further developments and findings will enhance the usage of this method and minimize the limitation of current approach in building a prototype.

  7. West Flank Downhole Temperature Data

    DOE Data Explorer

    Doug Blankenship

    2008-03-01

    Downhole temperature data for the three wells inside the West Flank FORGE footprint; 83-11, TCH 74-2 and TCH 48-11. TCH 74-2 and TCH 48-11 were both collected before 1990 and 83-11 was collected in 2009. The are compiled into one spreadsheet for ease of visualization.

  8. An intelligent CNC machine control system architecture

    SciTech Connect

    Miller, D.J.; Loucks, C.S.

    1996-10-01

    Intelligent, agile manufacturing relies on automated programming of digitally controlled processes. Currently, processes such as Computer Numerically Controlled (CNC) machining are difficult to automate because of highly restrictive controllers and poor software environments. It is also difficult to utilize sensors and process models for adaptive control, or to integrate machining processes with other tasks within a factory floor setting. As part of a Laboratory Directed Research and Development (LDRD) program, a CNC machine control system architecture based on object-oriented design and graphical programming has been developed to address some of these problems and to demonstrate automated agile machining applications using platform-independent software.

  9. FPGA-Based Fused Smart-Sensor for Tool-Wear Area Quantitative Estimation in CNC Machine Inserts

    PubMed Central

    Trejo-Hernandez, Miguel; Osornio-Rios, Roque Alfredo; de Jesus Romero-Troncoso, Rene; Rodriguez-Donate, Carlos; Dominguez-Gonzalez, Aurelio; Herrera-Ruiz, Gilberto

    2010-01-01

    Manufacturing processes are of great relevance nowadays, when there is a constant claim for better productivity with high quality at low cost. The contribution of this work is the development of a fused smart-sensor, based on FPGA to improve the online quantitative estimation of flank-wear area in CNC machine inserts from the information provided by two primary sensors: the monitoring current output of a servoamplifier, and a 3-axis accelerometer. Results from experimentation show that the fusion of both parameters makes it possible to obtain three times better accuracy when compared with the accuracy obtained from current and vibration signals, individually used. PMID:22319304

  10. FPGA-based fused smart-sensor for tool-wear area quantitative estimation in CNC machine inserts.

    PubMed

    Trejo-Hernandez, Miguel; Osornio-Rios, Roque Alfredo; de Jesus Romero-Troncoso, Rene; Rodriguez-Donate, Carlos; Dominguez-Gonzalez, Aurelio; Herrera-Ruiz, Gilberto

    2010-01-01

    Manufacturing processes are of great relevance nowadays, when there is a constant claim for better productivity with high quality at low cost. The contribution of this work is the development of a fused smart-sensor, based on FPGA to improve the online quantitative estimation of flank-wear area in CNC machine inserts from the information provided by two primary sensors: the monitoring current output of a servoamplifier, and a 3-axis accelerometer. Results from experimentation show that the fusion of both parameters makes it possible to obtain three times better accuracy when compared with the accuracy obtained from current and vibration signals, individually used.

  11. CNC Machining Of The Complex Copper Electrodes

    NASA Astrophysics Data System (ADS)

    Popan, Ioan Alexandru; Balc, Nicolae; Popan, Alina

    2015-07-01

    This paper presents the machining process of the complex copper electrodes. Machining of the complex shapes in copper is difficult because this material is soft and sticky. This research presents the main steps for processing those copper electrodes at a high dimensional accuracy and a good surface quality. Special tooling solutions are required for this machining process and optimal process parameters have been found for the accurate CNC equipment, using smart CAD/CAM software.

  12. Heat Shield Flank Close Up

    NASA Technical Reports Server (NTRS)

    2005-01-01

    This image from NASA's Mars Exploration Rover Opportunity features an up-close view of the flank piece of the rover's broken heat shield.

    The rover spent 36 sols investigating how the severe heating during entry through the atmosphere affected the heat shield. The most obvious is the fact that the heat shield inverted upon impact. Overall, engineers were interested in evaluating the performance of the heat shield's thermal protection system.

    This is the the panormamic camera team's best current attempt at generating a 'true color' view of what this scene would look like if viewed by a human on Mars. It was generated from a mathematical combination of six calibrated, left-eye panoramic camera images acquired around 3:07 p.m. local solar time on Opportunity's sol 331 (Dec. 28, 2004) using filters ranging in wavelengths from 430 to 750 nanometers.

  13. Advanced CNC Programming (EZ-CAM). 439-366.

    ERIC Educational Resources Information Center

    Casey, Joe

    This document contains two units for an advanced course in computer numerical control (CNC) for computer-aided manufacturing. It is intended to familiarize students with the principles and techniques necessary to create proper CNC programs using computer software. Each unit consists of an introduction, instructional objectives, learning materials,…

  14. Understanding and Writing G & M Code for CNC Machines

    ERIC Educational Resources Information Center

    Loveland, Thomas

    2012-01-01

    In modern CAD and CAM manufacturing companies, engineers design parts for machines and consumable goods. Many of these parts are cut on CNC machines. Whether using a CNC lathe, milling machine, or router, the ideas and designs of engineers must be translated into a machine-readable form called G & M Code that can be used to cut parts to precise…

  15. Effect of cellulose nanocrystals (CNC) on rheological and mechanical properties and crystallization behavior of PLA/CNC nanocomposites.

    PubMed

    Kamal, Musa R; Khoshkava, Vahid

    2015-06-05

    In earlier work, we reported that spray freeze drying of cellulose nanocrystals (CNC) yields porous agglomerate structures. On the other hand, the conventional spray dried CNC (CNCSD) and the freeze dried CNC (CNCFD) produce compact solid structures with very low porosity. As it is rather difficult to obtain direct microscopic evidence of the quality of dispersion of CNC in polymer nanocomposites, it was shown that supporting evidence of the quality and influence of dispersion in a polypropylene (PP)/CNC nanocomposite could be obtained by studying the rheological behavior, mechanical properties and crystallization characteristics of PP/CNC nanocomposites. In an effort to produce a sustainable, fully biosourced, biodegradable nanocomposite, this manuscript presents the results of a study of the rheological, mechanical and crystallization behavior of PLA/CNCSFD nanocomposites obtained by melt processing. The results are analyzed to determine CNC network formation, rheological percolation threshold concentrations, mechanical properties in the rubbery and glassy states, and the effect of CNCSFD on crystalline nucleation and crystallization rates of PLA. These results suggest that the porosity and network structure of CNCSFD agglomerates contribute significantly to good dispersion of CNC in the PLA matrix.

  16. CNC grinding of valve housing piston holes

    SciTech Connect

    Ashbaugh, F.A.

    1991-11-01

    Grinding has traditionally been used for machining operations requiring close dimensional tolerances and better surface finishes than can be obtained from other metal removal techniques. Using a grinding process for the last metal removal operation, the close tolerances and surface finishes can be easily held while eliminating the adverse conditions from the current metal removal processes. Pre-machined test parts were sent to a machine tool supplier to have the critical inside features of a typical piston bore finish machined using an internal CNC grinder equipped with high-frequency spindles. The piston bore and sealing angle were ground using a standard 120-grit silicon carbide wheel. The wafer step was machined using a solid carbide tool designed and built at Allied-Signal Inc., Kansas City Division (KCD). Six consecutive parts were machined for evaluation. The repeatability on all six parts was within print requirements. The inside corner radii was less than 0.002 in. and the surface finish was 8.2 arithmetical average or better as defined by ANSI B46.1, Surface Texture. Machining parts by this grinding process would eliminate bellmouth, chatter, waviness, and traveler polishing operations. It would produce a superior surface finish, small inside radii, and small easily removable burrs. It would also hold tolerances closer and significantly reduce scrap, rework, rejects, and deviations. 1 fig.

  17. Characterization of the Transiting Super-Earth 55 Cnc e

    NASA Astrophysics Data System (ADS)

    Demory, Brice-Olivier; Gillon, M.; Deming, D.; Seager, S.

    2011-09-01

    The transiting nature of 55 Cnc e has been recently unveiled independently by the MOST satellite in the visible (Winn et al. 2011) and Warm Spitzer in the infrared (Demory et al. 2011). 55 Cnc e is the only transiting super-Earth orbiting a naked eye star, which makes this planet a true Rosetta stone in the field of low-mass exoplanets. We will present new follow-up observations scheduled during Summer 2011 that will provide better constraints on the internal structure and immediate environment of this intriguing super-Earth.

  18. The Submarine Flanks of Anatahan Volcano

    NASA Astrophysics Data System (ADS)

    Chadwick, W. W.; Embley, R. W.; Johnson, P. D.; Merle, S. G.; Ristau, S.

    2003-12-01

    The submarine flanks of Anatahan volcano were surveyed with EM300 multibeam sonar and the MR1 sidescan sonar from the R/V Thomas G. Thompson in February 2003. This was part of a larger survey of over 50 submarine volcanoes within the Marianas volcanic arc between 13° 10'N and 23° 10'N (see Embley et al. and Baker et al. abstracts, this meeting). This work was part of a multi-year study of seafloor volcanism in diverse tectonic settings, funded by NOAA's Office of Ocean Exploration. (see: http://oceanexplorer.noaa.gov/explorations/03fire/). The island of Anatahan has a maximum elevation of 798 m, but its submarine flanks descend to depths of 2000-2600 m, so most of the volcano lies below sea level. The submarine part of the volcano is elongated in the east-west direction, like the island. Conspicuous in the bathymetry are numerous small parasitic cones and hummocky ridges on the southwest and east submarine flanks of the island that radiate outward (downslope) from the island. These features appear as areas of high reflectivity in the MR1 sidescan sonar and some have distinctly lobate outlines, suggesting that they are areas of relatively young lava flows. Some of these lava flows extend up to 15 km from the coastline of the island and to depths below 2000 m. The upslope sources of these lavas are often ambiguous, but we interpret that they were erupted underwater (as opposed to erupted on land and then flowing into the ocean) because they are associated with cones and ridges that may be vent areas. The other flanks of the island appear to be draped in volcaniclastic material that has been transported downslope from the shoreline, in some cases as distinct flows that radiate outward in braided channels that have slightly higher reflectivity than surrounding areas in the sidescan imagery. These fragmental flows also extend to depths below 2000 m, especially on the west and south flanks of the island. The most prominent feature in the bathymetry around Anatahan is a

  19. Curcumin-carboxymethyl chitosan (CNC) conjugate and CNC/LHR mixed polymeric micelles as new approaches to improve the oral absorption of P-gp substrate drugs.

    PubMed

    Ni, Jiang; Tian, Fengchun; Dahmani, Fatima Zohra; Yang, Hui; Yue, Deren; He, Shuwang; Zhou, Jianping; Yao, Jing

    2016-11-01

    The low oral bioavailability of numerous drugs has been mostly attributed to the significant effect of P-gp-mediated efflux on intestinal drug transport. Herein, we developed mixed polymeric micelles (MPMs) comprised of curcumin-carboxymethyl chitosan (CNC) conjugate, as a potential inhibitor of P-gp-mediated efflux and gastrointestinal absorption enhancer, and low-molecular-weight heparin-all-trans-retinoid acid (LHR) conjugate, as loading material, with the aim to improve the oral absorption of P-gp substrate drugs. CNC conjugate was synthesized by chemical bonding of curcumin (Cur) and carboxymethyl chitosan (CMCS) taking advantage of the inhibition of intestinal P-gp-mediated secretion by Cur and the intestinal absorption enhancement by CMCS. The chemical structure of CNC conjugate was characterized by (1)H NMR with a degree of substitution of Cur of 4.52-10.20%. More importantly, CNC conjugate markedly improved the stability of Cur in physiological pH. Cyclosporine A-loaded CNC/LHR MPMs (CsA-CNC/LHR MPMs) were prepared by dialysis method, with high drug loading 25.45% and nanoscaled particle size (∼200 nm). In situ single-pass perfusion studies in rats showed that both CsA + CNC mixture and CsA-CNC/LHR MPMs achieved significantly higher Ka and Peff than CsA suspension in the duodenum and jejunum segments (p <  0.01), which was comparable to verapamil coperfusion effect. Similarly, CsA + CNC mixture and CsA-CNC/LHR MPMs significantly increased the oral bioavailability of CsA as compared to CsA suspension. These results suggest that CNC conjugate might be considered as a promising gastrointestinal absorption enhancer, while CNC/LHR MPMs had the potential to improve the oral absorption of P-gp substrate drugs.

  20. Characteristics of the flank magnetopause: Cluster observations

    NASA Astrophysics Data System (ADS)

    Haaland, S.; Reistad, J.; Tenfjord, P.; Gjerloev, J.; Maes, L.; DeKeyser, J.; Maggiolo, R.; Anekallu, C.; Dorville, N.

    2014-11-01

    The magnetopause is a current sheet forming the boundary between the geomagnetic field on one side and the shocked solar wind on the other side. This paper discusses properties of the low-latitude dawn and dusk flanks of the magnetopause. The reported results are based on a large number of measurements obtained by the Cluster satellites during magnetopause traversals. Using a combination of single-spacecraft and multispacecraft techniques, we calculated macroscopic features such as thickness, location, and motion of the magnetopause. The results show that the typical flank magnetopause is significantly thicker than the dayside magnetopause and also possesses a pronounced and persistent dawn-dusk asymmetry. Thicknesses vary from 150 to 5000 km, with an median thickness of around 1400 km at dawn and around 1150 km at dusk. Current densities are on average higher on dusk, suggesting that the total current at dawn and dusk are similar. Solar wind conditions and the interplanetary magnetic field cannot fully explain the observed dawn-dusk asymmetry. For a number of crossings we were also able to derive detailed current density profiles. The profiles show that the magnetopause often consists of two or more adjacent current sheets, each current sheet typically several ion gyroradii thick and often with different current direction. This demonstrates that the flank magnetopause has a structure that is more complex than the thin, one-dimensional current sheet described by a Chapman-Ferraro layer.

  1. Linear positioning laser calibration setup of CNC machine tools

    NASA Astrophysics Data System (ADS)

    Sui, Xiulin; Yang, Congjing

    2002-10-01

    The linear positioning laser calibration setup of CNC machine tools is capable of executing machine tool laser calibraiotn and backlash compensation. Using this setup, hole locations on CNC machien tools will be correct and machien tool geometry will be evaluated and adjusted. Machien tool laser calibration and backlash compensation is a simple and straightforward process. First the setup is to 'find' the stroke limits of the axis. Then the laser head is then brought into correct alignment. Second is to move the machine axis to the other extreme, the laser head is now aligned, using rotation and elevation adjustments. Finally the machine is moved to the start position and final alignment is verified. The stroke of the machine, and the machine compensation interval dictate the amount of data required for each axis. These factors determine the amount of time required for a through compensation of the linear positioning accuracy. The Laser Calibrator System monitors the material temperature and the air density; this takes into consideration machine thermal growth and laser beam frequency. This linear positioning laser calibration setup can be used on CNC machine tools, CNC lathes, horizontal centers and vertical machining centers.

  2. Implementation of Additive Rapid Prototyping on Retrofit CNC Mill

    Technology Transfer Automated Retrieval System (TEKTRAN)

    Freeform fabrication techniques are gaining popularity as a means of making parts. Layered additive methods are associated with rapid prototyping. Many rapid prototyping methods are commercially proprietary and may cost thousands of dollars. Using a retrofit CNC mill for layered fabrication and C...

  3. Fidget with Widgets: CNC Activity Introduces the Flatbed Router

    ERIC Educational Resources Information Center

    Tryon, Daniel V.

    2006-01-01

    The computer numerical control (CNC) flatbed router is a powerful tool and a must-have piece of equipment for any technology education program in which students will produce a product--whether it involves Manufacturing, Materials Processing, or any of the vast array of Project Lead the Way courses. This article describes an activity--producing a…

  4. Generation of gear tooth surfaces by application of CNC machines

    NASA Technical Reports Server (NTRS)

    Litvin, F. L.; Chen, N. X.

    1994-01-01

    This study will demonstrate the importance of application of computer numerically controlled (CNC) machines in generation of gear tooth surfaces with new topology. This topology decreases gear vibration and will extend the gear capacity and service life. A preliminary investigation by a tooth contact analysis (TCA) program has shown that gear tooth surfaces in line contact (for instance, involute helical gears with parallel axes, worm gear drives with cylindrical worms, etc.) are very sensitive to angular errors of misalignment that cause edge contact and an unfavorable shape of transmission errors and vibration. The new topology of gear tooth surfaces is based on the localization of bearing contact, and the synthesis of a predesigned parabolic function of transmission errors that is able to absorb a piecewise linear function of transmission errors caused by gear misalignment. The report will describe the following topics: description of kinematics of CNC machines with six degrees of freedom that can be applied for generation of gear tooth surfaces with new topology. A new method for grinding of gear tooth surfaces by a cone surface or surface of revolution based on application of CNC machines is described. This method provides an optimal approximation of the ground surface to the given one. This method is especially beneficial when undeveloped ruled surfaces are to be ground. Execution of motions of the CNC machine is also described. The solution to this problem can be applied as well for the transfer of machine tool settings from a conventional generator to the CNC machine. The developed theory required the derivation of a modified equation of meshing based on application of the concept of space curves, space curves represented on surfaces, geodesic curvature, surface torsion, etc. Condensed information on these topics of differential geometry is provided as well.

  5. On the polymorphic and morphological changes of cellulose nanocrystals (CNC-I) upon mercerization and conversion to CNC-II.

    PubMed

    Jin, Ersuo; Guo, Jiaqi; Yang, Fang; Zhu, Yangyang; Song, Junlong; Jin, Yongcan; Rojas, Orlando J

    2016-06-05

    Polymorphic and morphological transformations of cellulosic materials are strongly associated to their properties and applications, especially in the case of emerging nanocelluloses. Related changes that take place upon treatment of cellulose nanocrystals (CNC) in alkaline conditions are studied here by XRD, TEM, AFM, and other techniques. The results indicate polymorphic transformation of CNC proceeds gradually in a certain range of alkali concentrations, i.e. from about 8% to 12.5% NaOH. In such transition alkali concentration, cellulose I and II allomorphs coexists. Such value and range of the transition concentration is strongly interdependent with the crystallite size of CNCs. In addition, it is distinctively lower than that for macroscopic fibers (12-15% NaOH). Transmission electron microscopy and particle sizing reveals that after mercerization CNCs tend to associate. Furthermore, TEMPO-oxidized mercerized CNC reveals the morphology of individual nanocrystal of the cellulose II type, which is composed of some interconnected granular structures. Overall, this work reveals how the polymorphism and morphology of individual CNC change in alkali conditions and sheds light onto the polymorphic transition from cellulose I to II.

  6. West Flank Coso, CA FORGE Seismic Reflection

    SciTech Connect

    Doug Blankenship

    2016-05-16

    PDFs of seismic reflection profiles 101,110, 111 local to the West Flank FORGE site. 45 line kilometers of seismic reflection data are processed data collected in 2001 through the use of vibroseis trucks. The initial analysis and interpretation of these data was performed by Unruh et al. (2001). Optim processed these data by inverting the P-wave first arrivals to create a 2-D velocity structure. Kirchhoff images were then created for each line using velocity tomograms (Unruh et al., 2001).

  7. Composition measurements in the dusk flank magnetosphere

    NASA Astrophysics Data System (ADS)

    Fuselier, S. A.; Elphic, R. C.; Gosling, J. T.

    1999-03-01

    The dusk flank magnetosphere exhibits significant structure. Several regions have been identified, including the plasma sheet, mantle, and low latitude boundary layer. Transitions from one region to the next, for example from the mantle to the plasma sheet, can be abrupt or indistinct. In addition, the density within the flank mantle can range over several orders of magnitude. Although there is significant structure in this region of the magnetosphere, individual regions often can be distinguished by their energy spectra and ion composition. ISEE Fast Plasma Experiment and Plasma Composition Experiment data are used to examine the composition of the mantle and to study a set of transitions from the mantle to the plasma sheet where plasmas with mantle-like and plasma sheet-like energies mix. This study indicates that the variability of the mantle density is largely due to variability in the solar wind component (H+ and He2+); the ionospheric plasma (O+) density is roughly constant. Similarly, the plasma with mantle-like energy found in the mixed region is largely of solar wind origin.

  8. West Flank Coso, CA FORGE Magnetotelluric Inversion

    DOE Data Explorer

    Doug Blankenship

    2016-05-16

    The Coso Magnetotelluric (MT) dataset of which the West Flank FORGE MT data is a subset, was collected by Schlumberger / WesternGeco and initially processed by the WesternGeco GeoSolutions Integrated EM Center of Excellence in Milan, Italy. The 2011 data was based on 99 soundings that were centered on the West Flank geothermal prospect. The new soundings along with previous data from 2003 and 2006 were incorporated into a 3D inversion. Full impedance tensor data were inverted in the 1-3000 Hz range. The modelling report notes several noise sources, specifically the DC powerline that is 20,000 feet west of the survey area, and may have affected data in the 0.02 to 10 Hz range. Model cell dimensions of 450 x 450 x 65 feet were used to avoid computational instability in the 3D model. The fit between calculated and observed MT values for the final model run had an RMS value of 1.807. The included figure from the WesternGeco report shows the sounding locations from the 2011, 2006 and 2003 surveys.

  9. Integrated CAD/CAM/CNC system based on STEP-NC and intelligent manufacturing

    NASA Astrophysics Data System (ADS)

    Du, Juan; Tian, Xitian; Zhang, Zhenming; Xu, Jianxin; Zhu, Mingquan

    2005-12-01

    In order to realize bi-direction exchange of information and knowledge sharing between CAD/CAM systems and CNC machines, a method of information integration was proposed based on process data model and STEP-NC neutral file. A frame of integrated CAD/CAM/CNC systems was established, and the key integration techniques including process data modeling based on XML form and automatic feature recognition were studied. Since the STEP-NC based CNC (STEP- CNC) system can undertake various intelligent functions that cannot be performed by the conventional CNC based on ISO 6983, the intelligent manufacturing functions of STEP- CNC system was also discussed. The presented methodology combining with the modern net and communication technologies provides an effective means for developing intelligent, integrated manufacturing systems for the 21 century.

  10. Research and exploitation of CNC laser manufacturing online monitoring system based on OpenGL

    NASA Astrophysics Data System (ADS)

    Wang, Gang; Hu, Shengsun; Wang, Mingjian; Ding, Wei; Zhao, Jie

    2010-12-01

    CNC manufacturing online monitoring technology is a significant method to improve the processing quality and achieve an important part of intelligent processing. Based on OpenGL 3D graphics technology, a Computer Numerical Control (CNC ) Laser Manufacturing 3D model is established; based on the model and the powerful ability of OpenGL, a CNC manufacturing on-line monitoring system is developed so as to achieve the ability of CNC remote real-time online monitoring in different working locations. Remote real-time online monitoring of different position of the CNC is realized. The online monitoring scope of the CNC is enlarged, with more flexibility to meet the demands of practical application, meanwhile the cost of hardware investment is greatly reduced.

  11. Absolute and geometric parameters of contact binary GW Cnc

    NASA Astrophysics Data System (ADS)

    Gürol, B.; Gökay, G.; Saral, G.; Gürsoytrak, S. H.; Cerit, S.; Terzioğlu, Z.

    2016-07-01

    We present the results of our investigation on the geometrical and physical parameters of the W UMa type binary system GW Cnc. We analyzed the photometric data obtained in 2010 and 2011 at Ankara University Observatory (AUO) and the spectroscopic data obtained in 2010 at TUBITAK National Observatory (TUG) by using the Wilson-Devinney (2013 revision) code to obtain the absolute and geometrical parameters. We derived masses and radii of the eclipsing system to be M1 = 0.257M⊙ , M2 = 0.971M⊙ , R1 = 0.526R⊙ and R2 = 0.961R⊙ with an orbital inclination i(∘) = 83.38 ± 0.25 and we determined the GW Cnc system to be a W-type W UMa over-contact binary with a mass ratio of q = 3.773 ± 0.007 .

  12. Motion Simulation Analysis of Rail Weld CNC Fine Milling Machine

    NASA Astrophysics Data System (ADS)

    Mao, Huajie; Shu, Min; Li, Chao; Zhang, Baojun

    CNC fine milling machine is a new advanced equipment of rail weld precision machining with high precision, high efficiency, low environmental pollution and other technical advantages. The motion performance of this machine directly affects its machining accuracy and stability, which makes it an important consideration for its design. Based on the design drawings, this article completed 3D modeling of 60mm/kg rail weld CNC fine milling machine by using Solidworks. After that, the geometry was imported into Adams to finish the motion simulation analysis. The displacement, velocity, angular velocity and some other kinematical parameters curves of the main components were obtained in the post-processing and these are the scientific basis for the design and development for this machine.

  13. Rossiter-McLaughlin Observations of 55 Cnc e

    NASA Astrophysics Data System (ADS)

    López-Morales, Mercedes; Triaud, Amaury H. M. J.; Rodler, Florian; Dumusque, Xavier; Buchhave, Lars A.; Harutyunyan, Avet; Hoyer, Sergio; Alonso, Roi; Gillon, Michaël; Kaib, Nathan A.; Latham, David. W.; Lovis, Christophe; Pepe, Francesco; Queloz, Didier; Raymond, Sean N.; Ségransan, Damien; Waldmann, Ingo P.; Udry, Stéphane

    2014-09-01

    We present Rossiter-McLaughlin observations of the transiting super-Earth 55 Cnc e collected during six transit events between 2012 January and 2013 November with HARPS and HARPS-N. We detect no radial velocity signal above 35 cm s-1 (3σ) and confine the stellar v sin i sstarf to 0.2 ± 0.5 km s-1. The star appears to be a very slow rotator, producing a very low amplitude Rossiter-McLaughlin effect. Given such a low amplitude, the Rossiter-McLaughlin effect of 55 Cnc e is undetected in our data, and any spin-orbit angle of the system remains possible. We also performed Doppler tomography and reach a similar conclusion. Our results offer a glimpse of the capacity of future instrumentation to study low amplitude Rossiter-McLaughlin effects produced by super-Earths.

  14. Emission Spectroscopy of the Super-Earth 55 Cnc e

    NASA Astrophysics Data System (ADS)

    Dragomir, Diana; Bean, Jacob; Kreidberg, Laura; Stevenson, Kevin B.; Line, Michael R.

    2017-01-01

    Recent surveys have revealed an extraordinary and unexplained diversity of low-mass exoplanets. The main frontier for constraining the nature and origins of these planets is atmospheric characterization to reveal their detailed physical properties. Previous spectroscopic observations of small exoplanets have been focused on transmission measurements, but these studies are often limited by clouds. We are turning small exoplanet characterization in a new direction with multi-wavelength observations (Warm Spitzer and HST WFC3) of the dayside of 55 Cnc e, a quintessential super-Earth in a tight orbit and transiting a nearby star. We will present the first dayside emission spectrum of a super-Earth, which we use to distinguish between different atmospheric compositions and constrain the vertical temperature structure of the atmosphere. Our results for 55 Cnc e will guide JWST emission spectroscopy of a much larger sample of small close-in transiting exoplanets.

  15. ROSSITER-MCLAUGHLIN OBSERVATIONS OF 55 Cnc e

    SciTech Connect

    López-Morales, Mercedes; Rodler, Florian; Dumusque, Xavier; Buchhave, Lars A.; Latham, David W.; Triaud, Amaury H. M. J.; Harutyunyan, Avet; Hoyer, Sergio; Alonso, Roi; Gillon, Michaël; Kaib, Nathan A.; Lovis, Christophe; Pepe, Francesco; Queloz, Didier; Ségransan, Damien; Udry, Stéphane; Raymond, Sean N.; Waldmann, Ingo P.

    2014-09-10

    We present Rossiter-McLaughlin observations of the transiting super-Earth 55 Cnc e collected during six transit events between 2012 January and 2013 November with HARPS and HARPS-N. We detect no radial velocity signal above 35 cm s{sup –1} (3σ) and confine the stellar v sin i {sub *} to 0.2 ± 0.5 km s{sup –1}. The star appears to be a very slow rotator, producing a very low amplitude Rossiter-McLaughlin effect. Given such a low amplitude, the Rossiter-McLaughlin effect of 55 Cnc e is undetected in our data, and any spin-orbit angle of the system remains possible. We also performed Doppler tomography and reach a similar conclusion. Our results offer a glimpse of the capacity of future instrumentation to study low amplitude Rossiter-McLaughlin effects produced by super-Earths.

  16. Rapid deformation of the South flank of kilauea volcano, hawaii.

    PubMed

    Owen, S; Segall, P; Freymueller, J; Mikijus, A; Denlinger, R; Arnadóttir, T; Sako, M; Bürgmann, R

    1995-03-03

    The south flank of Kilauea volcano has experienced two large [magnitude (M) 7.2 and M 6.1] earthquakes in the past two decades. Global Positioning System measurements conducted between 1990 and 1993 reveal seaward displacements of Kilauea's central south flank at rates of up to about 10 centimeters per year. In contrast, the northern side of the volcano and the distal ends of the south flank did not displace significantly. The observations can be explained by slip on a low-angle fault beneath the south flank combined with dilation deep within Kilauea's rift system, both at rates of at least 15 centimeters per year.

  17. CNC Turning Center Advanced Operations. Computer Numerical Control Operator/Programmer. 444-332.

    ERIC Educational Resources Information Center

    Skowronski, Steven D.; Tatum, Kenneth

    This student guide provides materials for a course designed to introduce the student to the operations and functions of a two-axis computer numerical control (CNC) turning center. The course consists of seven units. Unit 1 presents course expectations and syllabus, covers safety precautions, and describes the CNC turning center components, CNC…

  18. Effect of Flanking Sounds on the Auditory Continuity Illusion

    PubMed Central

    Kobayashi, Maori; Kashino, Makio

    2012-01-01

    Background The auditory continuity illusion or the perceptual restoration of a target sound briefly interrupted by an extraneous sound has been shown to depend on masking. However, little is known about factors other than masking. Methodology/Principal Findings We examined whether a sequence of flanking transient sounds affects the apparent continuity of a target tone alternated with a bandpass noise at regular intervals. The flanking sounds significantly increased the limit of perceiving apparent continuity in terms of the maximum target level at a fixed noise level, irrespective of the frequency separation between the target and flanking sounds: the flanking sounds enhanced the continuity illusion. This effect was dependent on the temporal relationship between the flanking sounds and noise bursts. Conclusions/Significance The spectrotemporal characteristics of the enhancement effect suggest that a mechanism to compensate for exogenous attentional distraction may contribute to the continuity illusion. PMID:23251666

  19. West Flank Coso, CA FORGE ArcGIS data 2

    DOE Data Explorer

    Doug Blankenship

    2016-03-01

    archive of ArcGIS data from the West Flank FORGE site located in Coso, California. Archive contains: 8 shapefiles polygon of the 3D geologic model polylines of the traces 3D modeled faults polylines of the fault traces from Duffield and Bacon, 1980 polygon of the West Flank FORGE site polylines of the traces of the geologic cross-sections (cross-sections in a separate archive in the GDR) polylines of the traces of the seismic reflection profiles through and adjacent to the West Flank site (seismic reflection profiles in a separate archive in the GDR) points of the well collars in and around the West Flank site polylines of the surface expression of the West Flank well paths

  20. Light Curves Analysis of Deeply Eclipsed Dwarf Nova GY Cnc

    NASA Astrophysics Data System (ADS)

    Voloshina, I.; Khruzina, T.

    2017-03-01

    The results of photometric observations of the dwarf nova GY Cnc in the Rc filter in 2013–2016 are presented, including observations during its outburst in April 2014. The orbital ephemerides of the system have been determined more accurately using these numerous data. The orbital period has not significantly changed during the ˜ 30000 orbital cycles since the earlier observations; no systematic variations of O–C were found out. The fluctuations within the limits 0.004d on a timescale of 1500–2000 Porb were detected. A combined model is used to solve for the parameters of GY Cnc for both states of the system. The donor star temperature, T2˜ 3667 K (Sp M0.2 V) varies between 3440 and 3900 K (Sp K8.8–M1.7 V). The semi-major axis of the disk is a˜0.22a0, on average. In quiet state, a varies within ˜ 40%. The disk has a considerable eccentricity (e˜0.2–0.3) for the small a values, a≤0.2a0. With increasing a the disk shape becomes more circular (e<0.1). The GY Cnc outburst is due to a sharp growth of the disk luminosity because of a diminution of αg parameter (which is related to the viscosity of the disk material) up to 0.1–0.2, and the temperature of the disk interiors increasing twofold to Tin ˜ 95000 K. These changes were probably due to infall of matter onto the surface of white dwarf as the outburst developed. For all accretion disk parameters in a quiet state considerable variations about their mean values are typical.

  1. Reducing maintenance costs in agreement with CNC machine tools reliability

    NASA Astrophysics Data System (ADS)

    Ungureanu, A. L.; Stan, G.; Butunoi, P. A.

    2016-08-01

    Aligning maintenance strategy with reliability is a challenge due to the need to find an optimal balance between them. Because the various methods described in the relevant literature involve laborious calculations or use of software that can be costly, this paper proposes a method that is easier to implement on CNC machine tools. The new method, called the Consequence of Failure Analysis (CFA) is based on technical and economic optimization, aimed at obtaining a level of required performance with minimum investment and maintenance costs.

  2. Intellectual Control System of Processing on CNC Machines

    NASA Astrophysics Data System (ADS)

    Nekrasov, R. Y.; Lasukov, A. A.; Starikov, A. I.; Soloviev, I. V.; Bekareva, O. V.

    2016-04-01

    Scientific and technical progress makes great demands for quality of engineering production. The priority is to ensure metalworking equipment with required dimensional accuracy during the entire period of operation at minimum manufacturing costs. In article considered the problem of increasing of accuracy of processing products on CNC. The authors offers a solution to the problem by providing compensating adjustment in the trajectory of the cutting tool and machining mode. The necessity of creation of mathematical models of processes behavior in an automated technological system operations (OATS). Based on the research, authors have proposed a generalized diagram of diagnosis and input operative correction and approximate mathematical models of individual processes of diagnosis.

  3. TX Cnc AS A MEMBER OF THE PRAESEPE OPEN CLUSTER

    SciTech Connect

    Zhang, X. B.; Deng, L.; Lu, P.

    2009-08-15

    We present B-, V-, and I-band CCD photometry of the W UMa-type binary system TX Cnc, which is a member star of the Praesepe open cluster. Based on the observations, new ephemeris and a revised photometric solution of the binary system were derived. Combined with the results of the radial velocity solution contributed by Pribulla et al., the absolute parameters of the system were determined. The mass, radius, and luminosity of the primary component are derived to be 1.35 {+-} 0.02 M {sub sun}, 1.27 {+-} 0.04 R {sub sun}, and 2.13 {+-} 0.11 L {sub sun}. Those for the secondary star are computed as 0.61 {+-} 0.01 M {sub sun}, 0.89 {+-} 0.03 R {sub sun}, and 1.26 {+-} 0.07 L {sub sun}, respectively. Based on these results, a distance modulus of (m - M) {sub V} = 6.34 {+-} 0.05 is determined for the star. It confirms the membership of TX Cnc to the Praesepe open cluster. The evolutionary status and the physical nature of the binary system are discussed compared with the theoretical model.

  4. MULTIBAND PHOTOMETRIC AND SPECTROSCOPIC ANALYSIS OF HV Cnc

    SciTech Connect

    Gökay, G.; Gürol, B.; Derman, E.

    2013-11-01

    In this paper, radial velocity and VI- and JHK{sub S} - (Two Micron All Sky Survey) band photometric data of the detached system HV Cnc have been analyzed. The primary component of HV Cnc, which is a member of the M67 cluster, is suspected to be either a blue straggler or turn-off star. The system is a single-lined spectroscopic binary and its light curve shows a total eclipse. Spectroscopic observations of the system revealed the third component, which shows contribution to the total light of the system. Light curve and radial velocity data have been analyzed using the Wilson-Devinney (W-D) code and JHK{sub S} filter definitions computed for the W-D code in this work. Our analysis shows that the mass and radius of the primary and secondary components are 1.31 M {sub ☉}, 0.52 M {sub ☉}, 1.87 R {sub ☉}, and 0.48 R {sub ☉}, respectively. All results are compared with previously published literature values and discussed.

  5. Hygroscopic Swelling Determination of Cellulose Nanocrystal (CNC) Films by Polarized Light Microscopy Digital Image Correlation.

    PubMed

    Shrestha, Shikha; Diaz, Jairo A; Ghanbari, Siavash; Youngblood, Jeffrey P

    2017-04-11

    The coefficient of hygroscopic swelling (CHS) of self-organized and shear-oriented cellulose nanocrystal (CNC) films was determined by capturing hygroscopic strains produced as result of isothermal water vapor intake in equilibrium. Contrast enhanced microscopy digital image correlation enabled the characterization of dimensional changes induced by the hygroscopic swelling of the films. The distinct microstructure and birefringence of CNC films served in exploring the in-plane hygroscopic swelling at relative humidity values ranging from 0% to 97%. Water vapor intake in CNC films was measured using dynamic vapor sorption (DVS) at constant temperature. The obtained experimental moisture sorption and kinetic profiles were analyzed by fitting with Guggenheim, Anderson, and deBoer (GAB) and Parallel Exponential Kinetics (PEK) models, respectively. Self-organized CNC films showed isotropic swelling, CHS ∼0.040 %strain/%C. By contrast, shear-oriented CNC films exhibited an anisotropic swelling, resulting in CHS ∼0.02 and ∼0.30 %strain/%C, parallel and perpendicular to CNC alignment, respectively. Finite element analysis (FEA) further predicted moisture diffusion as the predominant mechanism for swelling of CNC films.

  6. View looking northeast of console table and mirror flanked by ...

    Library of Congress Historic Buildings Survey, Historic Engineering Record, Historic Landscapes Survey

    View looking northeast of console table and mirror flanked by 18th century French chairs in the first floor Reception Hall - Perry Belmont House, 1618 New Hampshire Avenue, NW, Washington, District of Columbia, DC

  7. 1. FRONT (NORTH) SIDE; SMOKESTACKS FLANK PROTECTING BAY THAT CONTAINS ...

    Library of Congress Historic Buildings Survey, Historic Engineering Record, Historic Landscapes Survey

    1. FRONT (NORTH) SIDE; SMOKESTACKS FLANK PROTECTING BAY THAT CONTAINS COAL ELEVATING EQUIPMENT - Rath Packing Company, Boiler Room, Sycamore Street between Elm & Eighteenth Streets, Waterloo, Black Hawk County, IA

  8. GATE AND FLANKING FENCE AT ENTRANCE TO MEMORIAL WALK. VIEW ...

    Library of Congress Historic Buildings Survey, Historic Engineering Record, Historic Landscapes Survey

    GATE AND FLANKING FENCE AT ENTRANCE TO MEMORIAL WALK. VIEW TO NORTHEAST. - Rock Island National Cemetery, Rock Island Arsenal, 0.25 mile north of southern tip of Rock Island, Rock Island, Rock Island County, IL

  9. DETAIL OF FENCE FLANKING GATE AT ENTRANCE TO MEMORIAL WALK. ...

    Library of Congress Historic Buildings Survey, Historic Engineering Record, Historic Landscapes Survey

    DETAIL OF FENCE FLANKING GATE AT ENTRANCE TO MEMORIAL WALK. VIEW TO NORTHEAST. - Rock Island National Cemetery, Rock Island Arsenal, 0.25 mile north of southern tip of Rock Island, Rock Island, Rock Island County, IL

  10. East side detail, showing later wings flanking original entrance on ...

    Library of Congress Historic Buildings Survey, Historic Engineering Record, Historic Landscapes Survey

    East side detail, showing later wings flanking original entrance on east side. - Fitzsimons General Hospital, Red Cross Building, South Eighth Street Bounded by West McAfee Avenue on South & West Harlow Avenue on North, Aurora, Adams County, CO

  11. 6. DETAIL OF SCROLLED CENTRAL PANEL, FLANKED BY ALLEGORICAL STATUES ...

    Library of Congress Historic Buildings Survey, Historic Engineering Record, Historic Landscapes Survey

    6. DETAIL OF SCROLLED CENTRAL PANEL, FLANKED BY ALLEGORICAL STATUES (OF LEARNING) AND FESTOONS, ABOVE MAIN ENTRANCE OF THE ROEBLING SCHOOL. - John A. Roebling's Sons Company, Kinkora Works, Village of Roebling, Roebling, Burlington County, NJ

  12. Shared and service-oriented CNC machining system for intelligent manufacturing process

    NASA Astrophysics Data System (ADS)

    Li, Yao; Liu, Qiang; Tong, Ronglei; Cui, Xiaohong

    2015-11-01

    To improve efficiency, reduce cost, ensure quality effectively, researchers on CNC machining have focused on virtual machine tool, cloud manufacturing, wireless manufacturing. However, low level of information shared among different systems is a common disadvantage. In this paper, a machining database with data evaluation module is set up to ensure integrity and update. An online monitoring system based on internet of things and multi-sensors "feel" a variety of signal features to "percept" the state in CNC machining process. A high efficiency and green machining parameters optimization system "execute" service-oriented manufacturing, intelligent manufacturing and green manufacturing. The intelligent CNC machining system is applied in production. CNC machining database effectively shares and manages process data among different systems. The prediction accuracy of online monitoring system is up to 98.8% by acquiring acceleration and noise in real time. High efficiency and green machining parameters optimization system optimizes the original processing parameters, and the calculation indicates that optimized processing parameters not only improve production efficiency, but also reduce carbon emissions. The application proves that the shared and service-oriented CNC machining system is reliable and effective. This research presents a shared and service-oriented CNC machining system for intelligent manufacturing process.

  13. Cellulose nanocrystals (CNC) as carriers for a spirooxazine dye and its effect on photochromic efficiency.

    PubMed

    Sun, Bo; Hou, Qingxi; He, Zhibin; Liu, Zehua; Ni, Yonghao

    2014-10-13

    Nanocrystalline cellulose (CNC) as a renewable/sustainable material, has received much attention. Herein we studied CNC as carriers for a hydrophobic spirooxazine (SO)-based dye, 1,3-dihydro-1,3,3-trimethylspiro[2H-indole-2,3'-[3H]naphtha[2,1-b][1,4]oxazine], which may have potential applications in reversible memory photo-devices, textiles, photo-sensitive paper coatings, and inkjet printing inks. Due to the high cost and water-insolubility of this dye, it is desirable to improve its coloration efficiency and water-dispersibility. The experimental approach was to use CNC as carriers for the SO dye, thus obtaining a stable photochromic dye in aqueous systems. Transmission electron microscope (TEM) observation confirmed that the SO dye adsorbed on the surface of the CNC, which functioned as carriers for the photochromic dye. An impregnation process was adopted to anchor the dye onto cellulosic paper. It was found that the use of CNC resulted in a significant improvement in the SO coloration efficiency. The color stability and fatigue resistance were also studied. The use of CNC as carriers for a hydrophobic compound, its enhancement of associated properties, and its subsequent application were demonstrated.

  14. Transducer model produces facilitation from opposite-sign flanks

    NASA Technical Reports Server (NTRS)

    Solomon, J. A.; Watson, A. B.; Morgan, M. J.

    1999-01-01

    Small spots, lines and Gabor patterns can be easier to detect when they are superimposed upon similar spots, lines and Gabor patterns. Traditionally, such facilitation has been understood to be a consequence of nonlinear contrast transduction. Facilitation has also been reported to arise from non-overlapping patterns with opposite sign. We point out that this result does not preclude the traditional explanation for superimposed targets. Moreover, we find that facilitation from opposite-sign flanks is weaker than facilitation from same-sign flanks. Simulations with a transducer model produce opposite-sign facilitation.

  15. West Flank Coso FORGE Magnetotelluric 3D Data

    SciTech Connect

    Doug Blankenship

    2016-01-01

    This is the 3D version of the MT data for the West Flank FORGE area.The Coso geothermal field has had three Magnetotelluric (MT) datasets collected including surveys in 2003, 2006, and 2011. The final collection, in 2011, expanded the survey to the west and covers the West Flank of FORGE area.This most recent data set was collected by Schlumberger/WesternGeco and inverted by the WesternGeco GeoSolutions Integrated EM Center of Excellence in Milan, Italy; the 2003 and 2006 data were integrated for these inversions in the present study.

  16. 10. INTERIOR OF LIVING ROOM SHOWING FRONT DOOR FLANKED BY ...

    Library of Congress Historic Buildings Survey, Historic Engineering Record, Historic Landscapes Survey

    10. INTERIOR OF LIVING ROOM SHOWING FRONT DOOR FLANKED BY SLIDING GLASS WINDOWS AND ELECTRICAL WALL HEATER. ORIGINAL 1-LIGHT OVER 1-LIGHT, DOUBLE-HUNG WINDOW AT PHOTO RIGHT. CEILING VENT TO CHIMNEY AT RIGHT UPPER PHOTO CENTER. VIEW TO SOUTHEAST. - Bishop Creek Hydroelectric System, Plant 4, Worker Cottage, Bishop Creek, Bishop, Inyo County, CA

  17. West Flank Coso, CA FORGE Natural Fracture data

    SciTech Connect

    Doug Blankenship

    2016-05-16

    Natural fracture data from wells 33-7, 33A-7,52A-7, 52B-7 and 83-11 at West Flank. Fracture orientations were determined from image logs of these wells (see accompanying submissions). Data files contain depth, apparent (in wellbore reference frame) and true (in geographic reference frame) azimuth and dip, respectively.

  18. Diagnosis of susceptibility to malignant hyperthermia with flanking DNA markers.

    PubMed Central

    Healy, S J; Heffron, J J; Lehane, M; Bradley, D G; Johnson, K; McCarthy, T V

    1991-01-01

    OBJECTIVE--To define the region on human chromosome 19 carrying the gene for malignant hyperthermia susceptibility and to evaluate the use of flanking DNA markers in diagnosing susceptibility. DESIGN--Prospective molecular genetic linkage studies in a large malignant hyperthermia pedigree. SETTING--Irish malignant hyperthermia testing centre. SUBJECTS--A large Irish malignant hyperthermia pedigree. MAIN OUTCOME MEASURES--Routine diagnosis of susceptibility to malignant hyperthermia with in vitro contracture test on muscle biopsy specimens and genetic linkage between susceptibility and polymorphic DNA markers in a malignant hyperthermia family. RESULTS--Genetic typing of polymorphic DNA markers in a large Irish malignant hyperthermia pedigree generated a lod score of greater than 3 for the marker D19S9 and showed that the gene for susceptibility is flanked by the markers D19S9 and D19S16. These tightly linked flanking markers allowed non-invasive presymptomatic diagnosis of susceptibility in five untested subjects in the large pedigree with an accuracy of greater than 99.7%. CONCLUSIONS--DNA markers flanking the gene for susceptibility to malignant hyperthermia can be used with high accuracy to diagnose susceptibility in subjects in large known malignant hyperthermia pedigrees and may replace the previous in vitro contracture test for diagnosing this inherited disorder in large families with malignant hyperthermia. PMID:1684123

  19. FACILITY 713, LIVING ROOM SHOWING DIAMONDPANED WINDOWS FLANKING THE FIREPLACE, ...

    Library of Congress Historic Buildings Survey, Historic Engineering Record, Historic Landscapes Survey

    FACILITY 713, LIVING ROOM SHOWING DIAMOND-PANED WINDOWS FLANKING THE FIREPLACE, AND LEADED-GLASS WINDOWS IN DINING ROOM IN RIGHT BACKGROUND, VIEW FACING SOUTHEAST. - Schofield Barracks Military Reservation, Central-Entry Single-Family Housing Type, Between Bragg & Grime Streets near Ayres Avenue, Wahiawa, Honolulu County, HI

  20. Continuous tone printing in silicone from CNC milled matrices

    NASA Astrophysics Data System (ADS)

    Hoskins, S.; McCallion, P.

    2014-02-01

    Current research at the Centre for Fine Print Research (CFPR) at the University of the West of England, Bristol, is exploring the potential of creating coloured pictorial imagery from a continuous tone relief surface. To create the printing matrices the research team have been using CNC milled images where the height of the relief image is dictated by creating a tone curve and then milling this curve into a series of relief blocks from which the image is cast in a silicone ink. A translucent image is cast from each of the colour matrices and each colour is assembled - one on top of another - resulting is a colour continuous tone print, where colour tone is created by physical depth of colour. This process is a contemporary method of continuous tone colour printing based upon the Nineteenth Century black and white printing process of Woodburytype as developed by Walter Bentley Woodbury in 1865. Woodburytype is the only true continuous tone printing process invented, and although its delicate and subtle surfaces surpassed all other printing methods at the time. The process died out in the late nineteenth century as more expedient and cost effective methods of printing prevailed. New research at CFPR builds upon previous research that combines 19th Century Photomechanical techniques with digital technology to reappraise the potential of these processes.

  1. The axisymmetric envelopes of RS Cnc and EP Aqr

    NASA Astrophysics Data System (ADS)

    Le Bertre, T.; Hoai, D. T.; Nhung, P. T.; Winters, J. M.

    2016-12-01

    We report on observations obtained at IRAM on two semi-regular variable Asymptotic Giant Branch (AGB) stars, RS Cnc and EP Aqr, undergoing mass loss at an intermediate rate of ˜ 10^{-7} MȯMd. Interferometric data obtained with the Plateau-de-Bure interferometer (NOEMA) have been combined with On-The-Fly maps obtained with the 30-m telescope in the CO(1-0) and (2-1) rotational lines. The spectral maps of spatially resolved sources reveal an axisymmetric morphology in which matter is flowing out at a low velocity (˜ 2 kms) in the equatorial planes, and at a larger velocity (˜ 8 kms) along the polar axes. There are indications that this kind of morpho-kinematics is relatively frequent among stars at the beginning of their evolution on the Thermally-Pulsing AGB, in particular among those that show composite CO line profiles, and that it might be caused by the presence of a companion. We discuss the progress that could be expected for our understanding of the mass loss mechanisms in this kind of sources by increasing the spatial resolution of the observations with ALMA or NOEMA.

  2. Systematics for checking geometric errors in CNC lathes

    NASA Astrophysics Data System (ADS)

    Araújo, R. P.; Rolim, T. L.

    2015-10-01

    Non-idealities presented in machine tools compromise directly both the geometry and the dimensions of machined parts, generating distortions in the project. Given the competitive scenario among different companies, it is necessary to have knowledge of the geometric behavior of these machines in order to be able to establish their processing capability, avoiding waste of time and materials as well as satisfying customer requirements. But despite the fact that geometric tests are important and necessary to clarify the use of the machine correctly, therefore preventing future damage, most users do not apply such tests on their machines for lack of knowledge or lack of proper motivation, basically due to two factors: long period of time and high costs of testing. This work proposes a systematics for checking straightness and perpendicularity errors in CNC lathes demanding little time and cost with high metrological reliability, to be used on factory floors of small and medium-size businesses to ensure the quality of its products and make them competitive.

  3. Flexural uplift of rift flanks in central Greece

    NASA Astrophysics Data System (ADS)

    Poulimenos, George; Doutsos, Theodor

    1997-12-01

    Uplifts, with elevations of up to 2000 m and short wavelengths (30-35 km), flank three major grabens in central Greece: the Rio, Sparta, and Atalanti grabens. They are bordered on their landward sides by narrow basins oriented parallel to the graben axes: the Manesi and Trichonis basins at the Rio graben and Copais and Istiea basins at the Atalanti graben. The flexural origin of these uplift profiles is investigated here by using thin, broken plate models. It is demonstrated that the observed topography of the graben flanks is consistent with the upward deflection of elastic and viscoelastic plates in response to upward directed forces applied at the graben flanks. In order to evaluate to applicability of each model, their predictions are checked against the observations. The elastic predictive modeling fits well with the observed flexural wavelengths and the flanking seismicity. However, it fails to predict the graben widths and the inferred elastic layer thickness. In contrast, the viscoelastic model successfully explains the graben widths and the "back" basins as flexural hinterland basins and matches the seismological data and the time constraints of rifting. It is therefore suggested that flexural uplift with viscoelastic relaxation accounts for the building of the graben flanks. The invoked viscoelastic models constrain the effective elastic thickness of the plates at 10 km for the Rio graben and 15 km for the Sparta and Atalanti grabens, suggesting a low-viscosity lower crust. Furthermore, they predict low rates of tectonic uplift of the order of 0.1 mm a-1 for the Atalanti graben, intermediate rates of 0.24-0.37 mm a-1 for the Rio graben, and high rates of 0.7-0.9 mm a-1 for the Sparta graben. The latter are quite possibly overestimated since napping events, capable of producing high local relief, are traced normal to the modeled profiles.

  4. Synthesis of chemical cross-linked gelatin hydrogel reinforced with cellulose nanocrystals (CNC)

    NASA Astrophysics Data System (ADS)

    Yin, Ooi Shok; Ahmad, Ishak; Amin, Mohd. Cairul Iqbal Mohd

    2014-09-01

    A novel method was performed to obtain hydrogel with superior sensitivity towards changes in pH and temperature by incorporation of CNC into gelatin based hydrogel. Glutaraldehyde was used as cross-linker due to its high chemical reactivity towards NH2 group on gelatin. Different ratio of gelatin / CNC hydrogel was produced in order to study the effects of CNC towards the swelling behaviour of hydrogel at different pH and temperature. Swelling tests were performed at different pH range from pH 3 to pH 11. Temperature swelling tests were performed at 25 °C and 37 °C. The hydrogel showed impressive pH sensitivity and maximum swelling was obtained at pH 3. Higher swelling ratio was observed at higher temperature. SEM micrographs showed that the pore size of hydrogel decreased with increasing CNC content due to formation of more rigid hydrogel structure. The characteristics of the hydrogel to respond to different pH and temperature suggest that gelatin / CNC hydrogel are promising candidates to be developed as drug carrier.

  5. Repurposing mainstream CNC machine tools for laser-based additive manufacturing

    NASA Astrophysics Data System (ADS)

    Jones, Jason B.

    2016-04-01

    The advent of laser technology has been a key enabler for industrial 3D printing, known as Additive Manufacturing (AM). Despite its commercial success and unique technical capabilities, laser-based AM systems are not yet able to produce parts with the same accuracy and surface finish as CNC machining. To enable the geometry and material freedoms afforded by AM, yet achieve the precision and productivity of CNC machining, hybrid combinations of these two processes have started to gain traction. To achieve the benefits of combined processing, laser technology has been integrated into mainstream CNC machines - effectively repurposing them as hybrid manufacturing platforms. This paper reviews how this engineering challenge has prompted beam delivery innovations to allow automated changeover between laser processing and machining, using standard CNC tool changers. Handling laser-processing heads using the tool changer also enables automated change over between different types of laser processing heads, further expanding the breadth of laser processing flexibility in a hybrid CNC. This paper highlights the development, challenges and future impact of hybrid CNCs on laser processing.

  6. The Kepler2 70-day Observation of the Eclipsing Cataclysmic AC Cnc

    NASA Astrophysics Data System (ADS)

    Schlegel, Eric M.; Honeycutt, R. K.

    2017-01-01

    We describe our analysis of the Kepler2 data on the eclipsing novalike cataclysmic variable AC Cnc. Our requested observations were obtained using the 1-minute cadence instrument mode. AC Cnc has an 8-hour orbital period; the Kepler2 observations span ~70 days, yielding ~200 eclipses and ~109,000 observations. The observations are very `clean' with essentially no contamination by nearby objects and essentially no drift of AC Cnc over the observation span. We detect the primary and secondary eclipses as well as a continuous evolution of the brightness from a minimum to a maximum and back. We also detect two `stunted' outbursts with an amplitude typical of Z~Cam stars rather than CV stunted outbursts.

  7. An iterative learning control method with application for CNC machine tools

    SciTech Connect

    Kim, D.I.; Kim, S.

    1996-01-01

    A proportional, integral, and derivative (PID) type iterative learning controller is proposed for precise tracking control of industrial robots and computer numerical controller (CNC) machine tools performing repetitive tasks. The convergence of the output error by the proposed learning controller is guaranteed under a certain condition even when the system parameters are not known exactly and unknown external disturbances exist. As the proposed learning controller is repeatedly applied to the industrial robot or the CNC machine tool with the path-dependent repetitive task, the distance difference between the desired path and the actual tracked or machined path, which is one of the most significant factors in the evaluation of control performance, is progressively reduced. The experimental results demonstrate that the proposed learning controller can improve machining accuracy when the CNC machine tool performs repetitive machining tasks.

  8. Flexural analysis of uplifted rift flanks on Venus

    NASA Technical Reports Server (NTRS)

    Evans, Susan A.; Simons, Mark; Solomon, Sean C.

    1992-01-01

    Knowledge of the thermal structure of a planet is vital to a thorough understanding of its general scheme of tectonics. Since no direct measurements of heat flow or thermal gradient are available for Venus, most estimates have been derived from theoretical considerations or by analog with the Earth. The flexural response of the lithosphere to applied loads is sensitive to regional thermal structure. Under the assumption that the yield strength as a function of depth can be specified, the temperature gradient can be inferred from the effective elastic plate thickness. Previous estimates of the effective elastic plate thickness of Venus range from 11-18 km for the foredeep north of Uorsar Rupes to 30-60 km for the annular troughs around several coronae. Thermal gradients inferred for these regions are 14-23 K km(exp -1) and 4-9 K km(exp -1) respectively. In this study, we apply the same techniques to investigate the uplifted flanks of an extensional rift. Hypotheses for the origin of uplifted rift flanks on Earth include lateral transport of heat from the center of the rift, vertical transport of heat by small-scale convection, differential thinning of the lithosphere, dynamical uplift, and isostatic response to mechanical uploading of the lithosphere. The 1st hypothesis is considered the dominant contributor to terrestrial rift flanks lacking evidence for volcanic activity, particularly for rift structures that are no longer active. In this study, we model the uplifted flanks of a venusian rift as the flexural response to a vertical end load.

  9. Geomorphology of the north flank of the Uinta Mountains

    USGS Publications Warehouse

    Bradley, W.H.

    1936-01-01

    beds now form hogbacks ranked along the sides of the fold. In places large faults, approximating the regional strike, cut these steeply inclined beds. Gently warped Tertiary sediments, mostly of Eocene age, fill the large Green River Basin, which lies north of the range, to a depth of several thousand feet and lap up on the flanks of the mountains, from which they were chiefly derived.

  10. The hamster flank organ model: Is it relevant to man

    SciTech Connect

    Franz, T.J.; Lehman, P.A.; Pochi, P.; Odland, G.F.; Olerud, J. )

    1989-10-01

    The critical role that androgens play in the etiology of acne has led to a search for topically active antiandrogens and the frequent use of the flank organ of the golden Syrian hamster as an animal model. 17-alpha-propyltestosterone (17-PT) has been identified as having potent antiandrogenic activity in the hamster model, and this report describes its clinical evaluation. Two double-blind placebo controlled studies comparing 4% 17-PT in 80% alcohol versus vehicle alone were conducted. One study examined 17-PT sebosuppressive activity in 20 subjects. The second study examined its efficacy in 44 subjects having mild to moderate acne. A third study measured in vitro percutaneous absorption of 17-PT through hamster flank and monkey skin, and human face skin in-vivo, using radioactive drug. 17-PT was found to be ineffective in reducing either the sebum excretion rate or the number of inflammatory acne lesions. Failure of 17-PT to show clinical activity was not a result of poor percutaneous absorption. Total absorption in man was 7.7% of the dose and only 1.0% in the hamster. The sebaceous gland of hamster flank organ is apparently more sensitive to antiandrogens than the human sebaceous gland.

  11. Chemical crosslinking of acrylic acid to form biocompatible pH sensitive hydrogel reinforced with cellulose nanocrystals (CNC)

    NASA Astrophysics Data System (ADS)

    Lim, Lim Sze; Ahmad, Ishak; Lazim, Mohd Azwani Shah Mat; Amin, Mohd. Cairul Iqbal Mohd

    2014-09-01

    The purpose of this study is to produce a novel pH and temperature sensitive hydrogel, composed of poly(acrylic acid) (PAA) and cellulose nanocrystal (CNC). CNC was extracted from kenaf fiber through a series of alkali and bleaching treatments followed by acid hydrolysis. The PAA was then subjected to chemical cross-linking using the cross-linking agent (N,N-methylenebisacrylamide) with CNC entrapped in PAA matrix. The mixture was casted onto petri dish to obtain disc shape hydrogel. The effects of reaction conditions such as the ratio of PAA and CNC on the swelling behavior of the hydrogel obtained towards pH and temperature were studied. The obtained hydrogel was further subjected to different tests such swelling test for swelling behaviour at different pH and temperature along with scanning electron microscopy (SEM) for morphology analysis. The hydrogel obtained showed excellent pH sensitivity and obtained maximum swelling at pH 7. Besides that, hydrogel obtained showed significant increase in swelling ratio when temperature of swelling medium was increased from 25°C to 37°C. SEM micrograph showed that the pore size of the hydrogel decreases with increase of CNC content proving that the hydrogel structure became more rigid with addition of CNC. The PAA/CNC hydrogel with such excellent sensitivity towards pH and temperature can be developed further as drug carrier.

  12. Chemical crosslinking of acrylic acid to form biocompatible pH sensitive hydrogel reinforced with cellulose nanocrystals (CNC)

    SciTech Connect

    Lim, Lim Sze; Ahmad, Ishak; Lazim, Mohd Azwani Shah Mat; Amin, Mohd. Cairul Iqbal Mohd

    2014-09-03

    The purpose of this study is to produce a novel pH and temperature sensitive hydrogel, composed of poly(acrylic acid) (PAA) and cellulose nanocrystal (CNC). CNC was extracted from kenaf fiber through a series of alkali and bleaching treatments followed by acid hydrolysis. The PAA was then subjected to chemical cross-linking using the cross-linking agent (N,N-methylenebisacrylamide) with CNC entrapped in PAA matrix. The mixture was casted onto petri dish to obtain disc shape hydrogel. The effects of reaction conditions such as the ratio of PAA and CNC on the swelling behavior of the hydrogel obtained towards pH and temperature were studied. The obtained hydrogel was further subjected to different tests such swelling test for swelling behaviour at different pH and temperature along with scanning electron microscopy (SEM) for morphology analysis. The hydrogel obtained showed excellent pH sensitivity and obtained maximum swelling at pH 7. Besides that, hydrogel obtained showed significant increase in swelling ratio when temperature of swelling medium was increased from 25°C to 37°C. SEM micrograph showed that the pore size of the hydrogel decreases with increase of CNC content proving that the hydrogel structure became more rigid with addition of CNC. The PAA/CNC hydrogel with such excellent sensitivity towards pH and temperature can be developed further as drug carrier.

  13. CNC Turning Center Operations and Prove Out. Computer Numerical Control Operator/Programmer. 444-334.

    ERIC Educational Resources Information Center

    Skowronski, Steven D.

    This student guide provides materials for a course designed to instruct the student in the recommended procedures used when setting up tooling and verifying part programs for a two-axis computer numerical control (CNC) turning center. The course consists of seven units. Unit 1 discusses course content and reviews and demonstrates set-up procedures…

  14. Development of a QFD-based expert system for CNC turning centre selection

    NASA Astrophysics Data System (ADS)

    Prasad, Kanika; Chakraborty, Shankar

    2015-10-01

    Computer numerical control (CNC) machine tools are automated devices capable of generating complicated and intricate product shapes in shorter time. Selection of the best CNC machine tool is a critical, complex and time-consuming task due to availability of a wide range of alternatives and conflicting nature of several evaluation criteria. Although, the past researchers had attempted to select the appropriate machining centres using different knowledge-based systems, mathematical models and multi-criteria decision-making methods, none of those approaches has given due importance to the voice of customers. The aforesaid limitation can be overcome using quality function deployment (QFD) technique, which is a systematic approach for integrating customers' needs and designing the product to meet those needs first time and every time. In this paper, the adopted QFD-based methodology helps in selecting CNC turning centres for a manufacturing organization, providing due importance to the voice of customers to meet their requirements. An expert system based on QFD technique is developed in Visual BASIC 6.0 to automate the CNC turning centre selection procedure for different production plans. Three illustrative examples are demonstrated to explain the real-time applicability of the developed expert system.

  15. Technical and Symbolic Knowledge in CNC Machining: A Study of Technical Workers of Different Backgrounds.

    ERIC Educational Resources Information Center

    Martin, Laura M. W.; Beach, King

    Performances of 45 individuals with varying degrees of formal and informal training in machining and programming were compared on tasks designed to tap intellectual changes that may occur with the introduction of computer numerical control (CNC). Participants--30 machinists, 8 machine operators, and 7 engineers--were asked background questions and…

  16. 78 FR 50135 - CNC Development, Ltd., Exousia Advanced Materials, Inc., and South American Minerals, Inc.; Order...

    Federal Register 2010, 2011, 2012, 2013, 2014

    2013-08-16

    ... From the Federal Register Online via the Government Publishing Office SECURITIES AND EXCHANGE COMMISSION CNC Development, Ltd., Exousia Advanced Materials, Inc., and South American Minerals, Inc.; Order... current and accurate information concerning the securities of South American Minerals, Inc. because it...

  17. Learning Control: Sense-Making, CNC Machines, and Changes in Vocational Training for Industrial Work

    ERIC Educational Resources Information Center

    Berner, Boel

    2009-01-01

    The paper explores how novices in school-based vocational training make sense of computerized numerical control (CNC) machines. Based on two ethnographic studies in Swedish schools, one from the early 1980s and one from 2006, it analyses change and continuity in the cognitive, social, and emotional processes of learning how to become a machine…

  18. Flank Terraces of Martian Shield Volcanoes: Architecture and Formation

    NASA Astrophysics Data System (ADS)

    Byrne, P. K.; van Wyk de Vries, B.; Murray, J. B.; Troll, V. R.

    2007-12-01

    Flank terraces are topographically subtle bulge-like structures on the sides of numerous Martian shield volcanoes. They have a gentle convex profile in cross section. These structures have an arcuate outline in plan, and are arranged in a distinctive, imbricate "fish scale" pattern about each terraced edifice. Terraces are generally regarded as compressive features, formed by magma chamber inflation or lithospheric flexure. Some workers argue they are extensional in nature however, due to flank relaxation or gravitational slumping. Previously recognised on Olympus Mons and the Tharsis Montes (Ascraeus, Pavonis, and Arsia), we show that this pattern also exists on Elysium Mons, Hecates Tholus, Albor Tholus, and Ceraunius Tholus, and Alba Patera. Terrace distribution differs between volcanoes, but the characteristic pattern remains the same. Terraces must be late-stage/reactivated structures relative to volcano growth, as they remain visible today. The mechanism responsible for terrace formation probably acts throughout the edifices, as terraces occur at all volcano elevations. Differences in distribution may be due to variations in edifice internal structure, geometry, or the interplay between local and regional stresses. That terraces occur across such a range of Martian volcanoes implies they are size-, slope-, and volcano age-independent structures. The presence and number of other tectonic structures, e.g. calderas and gräben, also vary between terraced volcanoes. Like these other structures, flank terraces may be a fundamental feature of Martian volcano development. In light of these observations, existing formation mechanism hypotheses must be revisited. Magma chamber tumescence, which may have occurred to varying extents on these volcanoes, does not produce convex terrace structures. Both flank relaxation and shallow slumps are associated with volcano spreading, yet none of the Martian examples shows evidence of radially oriented gräben or collapse scars. A

  19. West Flank Coso, CA FORGE 3D geologic model

    SciTech Connect

    Doug Blankenship

    2016-03-01

    This is an x,y,z file of the West Flank FORGE 3D geologic model. Model created in Earthvision by Dynamic Graphic Inc. The model was constructed with a grid spacing of 100 m. Geologic surfaces were extrapolated from the input data using a minimum tension gridding algorithm. The data file is tabular data in a text file, with lithology data associated with X,Y,Z grid points. All the relevant information is in the file header (the spatial reference, the projection etc.) In addition all the fields in the data file are identified in the header.

  20. Plasma Transport at the Magnetospheric Flank Boundary. Final report

    SciTech Connect

    Otto, Antonius

    2012-04-23

    Progress is highlighted in these areas: 1. Model of magnetic reconnection induced by three-dimensional Kelvin Helmholtz (KH) modes at the magnetospheric flank boundary; 2. Quantitative evaluation of mass transport from the magnetosheath onto closed geomagnetic field for northward IMF; 3. Comparison of mass transfer by cusp reconnection and Flank Kelvin Helmholtz modes; 4. Entropy constraint and plasma transport in the magnetotail - a new mechanism for current sheet thinning; 5. Test particle model for mass transport onto closed geomagnetic field for northward IMF; 6. Influence of density asymmetry and magnetic shear on (a) the linear and nonlinear growth of 3D Kelvin Helmholtz (KH) modes, and (b) three-dimensional KH mediated mass transport; 7. Examination of entropy and plasma transport in the magnetotail; 8. Entropy change and plasma transport by KH mediated reconnection - mixing and heating of plasma; 9. Entropy and plasma transport in the magnetotail - tail reconnection; and, 10. Wave coupling at the magnetospheric boundary and generation of kinetic Alfven waves.

  1. A modal-spectral model for flanking transmissions

    NASA Astrophysics Data System (ADS)

    Poblet-Puig, Jordi

    2016-11-01

    A model for the prediction of direct and indirect (flanking) sound transmissions is presented. It can be applied to geometries with extrusion symmetry. The structures are modelled with spectral finite elements. The acoustic domains are described by means of a modal expansion of the pressure field and must be cuboid-shaped. These reasonable simplifications in the geometry allow the use of more efficient numerical methods. Consequently the coupled vibroacoustic problem in structures such as junctions is efficiently solved. The vibration reduction index of T-junctions with acoustic excitation and with point force excitation is compared. The differences due to the excitation type obey quite general trends that could be taken into account by prediction formulas. However, they are smaller than other uncertainties not considered in practice. The model is also used to check if the sound transmissions of a fully vibroacoustic problem involving several flanking paths can be reproduced by superposition of independent paths. There exist some differences caused by the interaction between paths, which are more important at low frequencies.

  2. Preparation of the CNC/Ag/beeswax composites for enhancing antibacterial and water resistance properties of paper.

    PubMed

    Liu, Kai; Liang, Hunan; Nasrallah, Joseph; Chen, Lihui; Huang, Liulian; Ni, Yonghao

    2016-05-20

    An effective method of preparing composites containing inorganic (Ag) and organic (beeswax) particles was established in this study. Ag nanoparticles were first immobilized on the cellulose nanocrystals (CNC) during the reduction of AgNO3 in the presence of CNC, then mixed with beeswax by high speed stirring. Scanning transmission electron microscopy (STEM) images indicated that Ag and beeswax particles were uniformly dispersed and stable in the network structure formed by CNC. Upon coating on a paper surface, a layer of beeswax film was evident based on scanning electron microscopy (SEM) images. The dynamic contact angle and antibacterial activity tests indicated that the contact angle of coated paper reached 113.06° and the growth inhibition of Escherichia coli increased to 99.96%, respectively, at a coating amount of 21.53 g/m(2). When applied onto paper surface by coating, the CNC/Ag/beeswax composites can impact paper with antibacterial property and improved water resistance.

  3. On some peculiarities of the UBVRI-light curves of cataclysmic variables DQ Her, AC Cnc, AM Her.

    NASA Astrophysics Data System (ADS)

    Dmitrienko, E. S.

    Results of UBVRI-photometry of the postnova DQ Her (1982 and 1989), the nova-like AC Cnc (1985 and 1989) and the polar AM Her (1989, summer) have been presented. The peculiarities of the variability of the average light level and of the light curves shape of these three systems and "O-C"-time-dependence for DQ Her and AC Cnc have been examined. The value "O-C" of DQ Her is decreasing with velocity Δ(O-C)/Δt ≍ 10-6 and has cyclic variations with the recurrence time of about 5 - 6 years and amplitude 2 - 4 minutes. No "O-C"-variations for AC Cnc have been detected. These facts speak in favour of the existence of some intrinsic difference between secondaries in DQ Her and AC Cnc.

  4. West Flank Coso, CA FORGE 3D temperature model

    SciTech Connect

    Doug Blankenship

    2016-03-01

    x,y,z data of the 3D temperature model for the West Flank Coso FORGE site. Model grid spacing is 250m. The temperature model for the Coso geothermal field used over 100 geothermal production sized wells and intermediate-depth temperature holes. At the near surface of this model, two boundary temperatures were assumed: (1) areas with surface manifestations, including fumaroles along the northeast striking normal faults and northwest striking dextral faults with the hydrothermal field, a temperature of ~104˚C was applied to datum at +1066 meters above sea level elevation, and (2) a near-surface temperature at about 10 meters depth, of 20˚C was applied below the diurnal and annual conductive temperature perturbations. These assumptions were based on heat flow studies conducted at the CVF and for the Mojave Desert. On the edges of the hydrothermal system, a 73˚C/km (4˚F/100’) temperature gradient contour was established using conductive gradient data from shallow and intermediate-depth temperature holes. This contour was continued to all elevation datums between the 20˚C surface and -1520 meters below mean sea level. Because the West Flank is outside of the geothermal field footprint, during Phase 1, the three wells inside the FORGE site were incorporated into the preexisting temperature model. To ensure a complete model was built based on all the available data sets, measured bottom-hole temperature gradients in certain wells were downward extrapolated to the next deepest elevation datum (or a maximum of about 25% of the well depth where conductive gradients are evident in the lower portions of the wells). After assuring that the margins of the geothermal field were going to be adequately modelled, the data was contoured using the Kriging method algorithm. Although the extrapolated temperatures and boundary conditions are not rigorous, the calculated temperatures are anticipated to be within ~6˚C (20˚F), or one contour interval, of the

  5. Bathymetry of the southwest flank of Mauna Loa Volcano, Hawaii

    USGS Publications Warehouse

    Chadwick, William W.; Moore, James G.; Fox, Christopher G.

    1994-01-01

    Much of the seafloor topography in the map area is on the southwest submarine flank of the currently active Mauna Loa Volcano. The benches and blocky hills shown on the map were shaped by giant landslides that resulted from instability of the rapidly growing volcano. These landslides were imagined during a 1986 to 1991 swath sonar program of the United States Hawaiian Exclusive Economic Zone, a cooperative venture by the U.S. Geological Survey and the British Institute of Oceanographic Sciences (Lipman and others, 1988; Moore and others, 1989). Dana Seamount (and probably also the neighboring Day Seamount) are apparently Cretaceous in age, based on paleomagnetic studies, and predate the growth of the Hawaiian Ridge volcanoes (Sager and Pringle, 1990).

  6. Microsatellite flanking region similarities among different loci within insect species.

    PubMed

    Meglécz, E; Anderson, S J; Bourguet, D; Butcher, R; Caldas, A; Cassel-Lundhagen, A; d'Acier, A C; Dawson, D A; Faure, N; Fauvelot, C; Franck, P; Harper, G; Keyghobadi, N; Kluetsch, C; Muthulakshmi, M; Nagaraju, J; Patt, A; Péténian, F; Silvain, J-F; Wilcock, H R

    2007-04-01

    Although microsatellites are ubiquitous in eukaryota, the number of available markers varies strongly among taxa. This meta-analysis was conducted on 32 insect species. Sequences were obtained from two assembled whole genomes, whole genome shotgun (WGS) sequences from 10 species and screening partial genomic libraries for microsatellites from 23 species. We have demonstrated: (1) strong differences in the abundance of microsatellites among species; (2) that microsatellites within species are often grouped into families based on similarities in their flanking sequences; (3) that the proportion of microsatellites grouped into families varies strongly among taxa; and (4) that microsatellite families were significantly more often associated with transposable elements - or their remnants - than unique microsatellite sequences.

  7. Pore Pressure Distribution and Flank Instability in Hydrothermally Altered Stratovolcanoes

    NASA Astrophysics Data System (ADS)

    Ball, J. L.; Taron, J.; Hurwitz, S.; Reid, M. E.

    2015-12-01

    Field and geophysical investigations of stratovolcanoes with long-lived hydrothermal systems commonly reveal that initially permeable regions (such as brecciated layers of pyroclastic material) can become both altered and water-bearing. Hydrothermal alteration in these regions, including clay formation, can turn them into low-permeability barriers to fluid flow, which could increase pore fluid pressures resulting in flank slope instability. We examined elevated pore pressure conditions using numerical models of hydrothermal flow in stratovolcanoes, informed by geophysical data about internal structures and deposits. Idealized radially symmetric meshes were developed based on cross-sectional profiles and alteration/permeability structures of Cascade Range stratovolcanoes. We used the OpenGeoSys model to simulate variably saturated conditions in volcanoes heated only by regional heat fluxes, as well as 650°C intrusions at two km depth below the surface. Meteoric recharge was estimated from precipitation rates in the Cascade Range. Preliminary results indicate zones of elevated pore pressures form: 1) where slopes are underlain by continuous low-permeability altered layers, or 2) when the edifice has an altered core with saturated, less permeable limbs. The first scenario might control shallow collapses on the slopes above the altered layers. The second could promote deeper flank collapses that are initially limited to the summit and upper slopes, but could progress to the core of an edifice. In both scenarios, pore pressures can be further elevated by shallow intrusions, or evolve over longer time scales under forcing from regional heat flux. Geometries without confining low-permeability layers do not show these pressure effects. Our initial scenarios use radially symmetric models, but we are also simulating hydrothermal flow under real 3D geometries with asymmetric subsurface structures (Mount Adams). Simulation results will be used to inform 3D slope

  8. Evidence of Multiple Flank Collapse at Volcan Baru, Panama

    NASA Astrophysics Data System (ADS)

    Herrick, J. A.; Rose, W. I.

    2009-12-01

    Michigan Tech's Peace Corps Master's International program (PCMI) in Geological Hazards has enabled several long-term investigations of active volcanoes in Latin America. To contribute to volcanic hazard assessments in Panama and achieve the goals defined by the PCMI program, we developed this debris avalanche project to address outstanding questions regarding Volcan Baru's most devastating event - massive slope failure of the western flank. Relying on basic mapping tools as well as the 2007 USGS Open-File Report focusing on hazard assessments of Panama's youngest and potentially active volcano, identification of the debris avalanche deposits (DAD) required detailed field investigations to determine the limits of the units. Extending across an area larger than 600 km2, field strategies were developed based on outcrop exposures within drainages and road-cuts. Aerial photos and DEMs of Baru's nested craters were interpreted by earlier scientists as the remains of two collapsed flanks. The results from in-depth field traverses provide several important discoveries: paleosols and sharp contacts within the stratigraphy indicate multiple DAD, deeply weathered hummocks red-flag the deposits more than 50-km away from Baru's crater, and high-quality radiocarbon samples (up to 45-cm long fragments of entrained wood) lie in the distal reaches of the debris flow area. During the 2008-2009 field seasons, we received assistance from the University of Panama, Civil Protection, and Panama's National Institute of Geography. Support from local experts and feedback from professional scientists of the Smithsonian Institution and Costa Rica's Institute of Electricity were invaluable. The 2-year investment in volcanic hazard studies has brought together resources from several countries as well as fresh data that will benefit the residents and emergency management officials of Panama. Jigsaw fractured clasts lie within Volcan Baru's debris avalanche deposits more than 28 km south of the

  9. Erosion of Terrestrial Rift Flank Topography: A Quantitative Study

    NASA Technical Reports Server (NTRS)

    Weissel, Jeffrey K.

    1999-01-01

    Many rifted or passive continental margins feature a seaward-facing erosional escarpment which abruptly demarcates deeply weathered, low relief, interior uplands from a deeply incised, high relief coastal zone. It is generally accepted that these escarpments originate at the time of continental rifting and propagate inland through the elevated rift flank topography at rates on the order of 1 km/Myr over the course of a margin's history. Considering the length of passive margins worldwide and an average rift flank plateau height of several hundred meters, it is clear that sediment eroded from passive margins is an important component of the mass flux from continents to oceans through geologic time. The overall goal of the research reported here is to develop a quantitative understanding of the kinematics of escarpment propagation across passive margins and the underlying geological processes responsible for this behavior. Plateau-bounding escarpments in general exhibit two basic forms depending on the direction of surface water drainage on the plateau interior relative to the escarpment. Where surface water flows away from the escarpment, the escarpment takes the form of subdued embayments and promontories, such that its overall trend remains fairly straight as it evolves with time. Where upland streams flow across the escarpment, it takes the form of dramatic, narrow gorges whose heads appear to propagate up the plateau drainage systems as large-scale knickpoints. From work on the Colorado Plateau, Schmidt (1987) noted that the Colorado River is located much closer to the Grand Canyon's south rim, a drainage divide escarpment, than to the north rim, which is a gorge-like escarpment. The main implication is that the gorge-like form might be associated with higher long-term average erosion rates compared to the drainage divide escarpment type.

  10. Vision-based on-machine measurement for CNC machine tool

    NASA Astrophysics Data System (ADS)

    Xia, Ruixue; Han, Jiang; Lu, Rongsheng; Xia, Lian

    2015-02-01

    A vision-based on-machine measurement system (OMM) was developed to improve manufacturing effectiveness. It was based on a visual probe to enable the CNC machine tool itself to act as a coordinate measuring machine (CMM) to inspect a workpiece. The proposed OMM system was composed of a visual probe and two software modules: computer-aided inspection planning (CAIP) module and measurement data processing (MDP) module. The auto-focus function of the visual probe was realized by using astigmatic method. The CAIP module was developed based on a CAD development platform with Open CASCADE as its kernel. The MDP module includes some algorithms for determination of inspection parameters, for example, the chamfered hole was measured through focus variation. The entire system was consequently verified on a CNC milling machine.

  11. Asymmetric nucleosomes flank promoters in the budding yeast genome.

    PubMed

    Ramachandran, Srinivas; Zentner, Gabriel E; Henikoff, Steven

    2015-03-01

    Nucleosomes in active chromatin are dynamic, but whether they have distinct structural conformations is unknown. To identify nucleosomes with alternative structures genome-wide, we used H4S47C-anchored cleavage mapping, which revealed that 5% of budding yeast (Saccharomyces cerevisiae) nucleosome positions have asymmetric histone-DNA interactions. These asymmetric interactions are enriched at nucleosome positions that flank promoters. Micrococcal nuclease (MNase) sequence-based profiles of asymmetric nucleosome positions revealed a corresponding asymmetry in MNase protection near the dyad axis, suggesting that the loss of DNA contacts around H4S47 is accompanied by protection of the DNA from MNase. Chromatin immunoprecipitation mapping of selected nucleosome remodelers indicated that asymmetric nucleosomes are bound by the RSC chromatin remodeling complex, which is required for maintaining nucleosomes at asymmetric positions. These results imply that the asymmetric nucleosome-RSC complex is a metastable intermediate representing partial unwrapping and protection of nucleosomal DNA on one side of the dyad axis during chromatin remodeling.

  12. 3D FEM Simulation of Flank Wear in Turning

    NASA Astrophysics Data System (ADS)

    Attanasio, Aldo; Ceretti, Elisabetta; Giardini, Claudio

    2011-05-01

    This work deals with tool wear simulation. Studying the influence of tool wear on tool life, tool substitution policy and influence on final part quality, surface integrity, cutting forces and power consumption it is important to reduce the global process costs. Adhesion, abrasion, erosion, diffusion, corrosion and fracture are some of the phenomena responsible of the tool wear depending on the selected cutting parameters: cutting velocity, feed rate, depth of cut, …. In some cases these wear mechanisms are described by analytical models as a function of process variables (temperature, pressure and sliding velocity along the cutting surface). These analytical models are suitable to be implemented in FEM codes and they can be utilized to simulate the tool wear. In the present paper a commercial 3D FEM software has been customized to simulate the tool wear during turning operations when cutting AISI 1045 carbon steel with uncoated tungsten carbide tip. The FEM software was improved by means of a suitable subroutine able to modify the tool geometry on the basis of the estimated tool wear as the simulation goes on. Since for the considered couple of tool-workpiece material the main phenomena generating wear are the abrasive and the diffusive ones, the tool wear model implemented into the subroutine was obtained as combination between the Usui's and the Takeyama and Murata's models. A comparison between experimental and simulated flank tool wear curves is reported demonstrating that it is possible to simulate the tool wear development.

  13. The study of double flank micro gear roll testing

    NASA Astrophysics Data System (ADS)

    Liu, Yen-Chih; An, Nai-Chun; Yang, Shu-Han; Yan, Sheng-Zhan; Chen, Shih-Lu

    2011-12-01

    The recent fast development of multifunctional portable electronic devices results in the obvious requirement of micro mechanical components. Due to the popular application of the micro actuators and the micro gearboxes, micro gears become the frequently used micro mechanical component in a small device such as small intelligent robots or dental surgical devices. Metal Industries Research & Development Centre (MIRDC) has successfully developed a small speed reducer that comprises several micro planetary gear trains. The module of this micro planetary gear train is 0.12mm. Since all gears are small, no commercial instrument is available for inspection. How to evaluate the manufacturing quality of micro gears becomes an important issue. This study focuses on the double flank gear rolling test and a specialized apparatus is built referring to the testing requirements in the international standards. The center distance variation during the rolling test is recorded and two indices, the total radial composite deviation and the maximum tooth-to-tooth radial composite deviation, are calculated to evaluate the accuracy grade of the micro gears. Experimental results show that the accuracy of the micro gear made by the cold forging process conforms to grade 7 defined in the ISO 1328-2 while grade 2 is achieved if the JGMA 116-02 is specified.

  14. Visualization of the Drosophila dKeap1-CncC interaction on chromatin illumines cooperative, xenobiotic-specific gene activation.

    PubMed

    Deng, Huai; Kerppola, Tom K

    2014-08-01

    Interactions among transcription factors control their physiological functions by regulating their binding specificities and transcriptional activities. We implement a strategy to visualize directly the genomic loci that are bound by multi-protein complexes in single cells in Drosophila. This method is based on bimolecular fluorescence complementation (BiFC) analysis of protein interactions on polytene chromosomes. Drosophila Keap1 (dKeap1)-CncC complexes localized to the nucleus and bound chromatin loci that were not bound preferentially by dKeap1 or CncC when they were expressed separately. dKeap1 and CncC binding at these loci was enhanced by phenobarbital, but not by tert-butylhydroquinone (tBHQ) or paraquat. Endogenous dKeap1 and CncC activated transcription of the Jheh (Jheh1, Jheh2, Jheh3) and dKeap1 genes at these loci, whereas CncC alone activated other xenobiotic response genes. Ectopic dKeap1 expression increased CncC binding at the Jheh and dKeap1 gene loci and activated their transcription, whereas dKeap1 inhibited CncC binding at other xenobiotic response gene loci and suppressed their transcription. The combinatorial chromatin-binding specificities and transcriptional activities of dKeap1-CncC complexes mediated the selective activation of different sets of genes by different xenobiotic compounds, in part through feed-forward activation of dKeap1 transcription.

  15. A photometric study of the eclipsing dwarf nova GY Cnc in quiescence and during an outburst

    NASA Astrophysics Data System (ADS)

    Khruzina, T. S.; Voloshina, I. B.; Metlov, V. G.

    2016-11-01

    The results of photometric observations of the dwarf nova GY Cnc in the Rc filter acquired in 2013-2015 ( 3900 orbital cycles, 19 nights in total) are presented, including observations during its outburst in April 2014. The binary's orbital elements have been refined. The orbital period has changed only insignificantly during the 30 000 P orb since the earlier observations; no systematic O-C variations were detected, only fluctuations within 0.004d on time scales of 1500-2000 P orb. A "combined" model is used to solve for the parameters of GY Cnc during two states of the system. The flux from the white dwarf is negligible due to the star's small size. The temperature of the donor star, T 2 3667 K (Sp M0.2 V), varies between 3440 and 3900 K (Sp K8.8-M1.7 V). The semi-major axis of the disk is a 0.22a0, on average. In quiescence, a varies within 40%. The disk has a considerable eccentricity ( e 0.2-0.3) for a < 0.2a0. The disk shape becomes more circular ( e < 0.1) with increasing a. The outburst of GY Cnc was associated with increased luminosity of the disk due to the parameter α g (related to the viscosity of the disk material) decreasing to 0.1-0.2 and the temperature in the inner parts of the disk increasing twofold, to T in 95 000 K. These changes were apparently due to the infall of matter onto the surface of the white dwarf as the outburst developed. All parameters of the accretion disk in quiescence display considerable variations about their mean values.

  16. Design and accuracy analysis of a metamorphic CNC flame cutting machine for ship manufacturing

    NASA Astrophysics Data System (ADS)

    Hu, Shenghai; Zhang, Manhui; Zhang, Baoping; Chen, Xi; Yu, Wei

    2016-09-01

    The current research of processing large size fabrication holes on complex spatial curved surface mainly focuses on the CNC flame cutting machines design for ship hull of ship manufacturing. However, the existing machines cannot meet the continuous cutting requirements with variable pass conditions through their fixed configuration, and cannot realize high-precision processing as the accuracy theory is not studied adequately. This paper deals with structure design and accuracy prediction technology of novel machine tools for solving the problem of continuous and high-precision cutting. The needed variable trajectory and variable pose kinematic characteristics of non-contact cutting tool are figured out and a metamorphic CNC flame cutting machine designed through metamorphic principle is presented. To analyze kinematic accuracy of the machine, models of joint clearances, manufacturing tolerances and errors in the input variables and error models considering the combined effects are derived based on screw theory after establishing ideal kinematic models. Numerical simulations, processing experiment and trajectory tracking experiment are conducted relative to an eccentric hole with bevels on cylindrical surface respectively. The results of cutting pass contour and kinematic error interval which the position error is from-0.975 mm to +0.628 mm and orientation error is from-0.01 rad to +0.01 rad indicate that the developed machine can complete cutting process continuously and effectively, and the established kinematic error models are effective although the interval is within a `large' range. It also shows the matching property between metamorphic principle and variable working tasks, and the mapping correlation between original designing parameters and kinematic errors of machines. This research develops a metamorphic CNC flame cutting machine and establishes kinematic error models for accuracy analysis of machine tools.

  17. Photometric solution and period analysis of the contact binary system AH Cnc

    NASA Astrophysics Data System (ADS)

    Peng, Ying-Jiang; Luo, Zhi-Quan; Zhang, Xiao-Bin; Deng, Li-Cai; Wang, Kun; Tian, Jian-Feng; Yan, Zheng-Zhou; Pan, Yang; Fang, Wei-Jing; Feng, Zhong-Wen; Tang, De-Lin; Liu, Qi-Li; Sun, Jin-Jiang; Zhou, Qiang

    2016-10-01

    Photometric observations of AH Cnc, a W UMa-type system in the open cluster M67, were carried out by using the 50BiN telescope. About 100 h of time-series B- and V -band data were taken, based on which eight new times of light minima were determined. By applying the Wilson-Devinney method, the light curves were modeled and a revised photometric solution of the binary system was derived. We confirmed that AH Cnc is a deep contact (f = 51%), low mass-ratio (q = 0.156) system. Adopting the distance modulus derived from study of the host cluster, we have re-calculated the physical parameters of the binary system, namely the masses and radii. The masses and radii of the two components were estimated to be respectively 1.188(±0.061) M ⊙, 1.332(±0.063) R ⊙ for the primary component and 0.185(±0.032) M ⊙, 0.592(±0.051) R ⊙ for the secondary. By adding the newly derived minimum timings to all the available data, the period variations of AH Cnc were studied. This shows that the orbital period of the binary is continuously increasing at a rate of dp/dt = 4.29 × 10-10 d yr-1. In addition to the long-term period increase, a cyclic variation with a period of 35.26 yr was determined, which could be attributed to an unresolved tertiary component of the system.

  18. [A case of xanthogranulomatous pyelonephritis presenting with the flank subcutaneous mass].

    PubMed

    Masuda, H; Nobuhisa, S; Ueda, H; Katsuoka, Y; Okano, H

    2000-05-01

    A 51-year-old female exhibited fever, left flank pain and left flank mass in March, 1993. Drip infusion pyelography (DIP) revealed a non-functioning left kidney with shadows of calculi, and abdominal computerized tomography (CT) showed renal calculi and multilocular cystic lesions in the left kidney extending through the perinephric space into the mass on the left flank. Percutaneous nephrostomy and percutaneous drainage were performed, followed by left nephrectomy. Histopathological findings revealed xanthogranulomatous pyelonephritis. There have been a few case reports of xanthogranulomatous pyelonephritis forming nephrocutaneous fistula in the back.

  19. Ovariectomy by left flank approach in prepubertal Nelore (Bos indicus) heifers

    PubMed Central

    Peiró, Juliana R.; Nogueira, Geison M.; Nogueira, Guilherme P.; Perri, Silvia H.V.; Cardoso, Daniel

    2009-01-01

    The main objective of this study was to evaluate a recumbent left flank approach to bilateral ovariectomy in prepubertal heifers and to develop an optimal surgical technique for this procedure. Both ovaries were removed from 6 Nelore heifers by left flank approach without any complications, except in 1 heifer, which was believed to have had only 1 ovary based on ultrasound and exploration during surgery, but was later found to have a remaining functional ovary. Ovariectomy via left flank approach in recumbent prepubertal heifers is feasible and technically easy. This procedure does not involve special instrumentation and, despite the invasive approach, it allows optimal visualization of the ovaries and uterus. PMID:19794897

  20. A method for amplification of unknown flanking sequences based on touchdown PCR and suppression-PCR.

    PubMed

    Gao, Song; He, Dan; Li, Guangquan; Zhang, Yanhua; Lv, Huiying; Wang, Li

    2016-09-15

    Thermal asymmetric staggered PCR is the most widely used technique to obtain the flanking sequences. However, it has some limitations, including a low rate of positivity, and complex operation. In this study, a improved method of it was made based on suppression-PCR and touchdown PCR. The PCR fragment obtained by the amplification was used directly for sequencing after gel purification. Using this improved method, the positive rate of amplified flanking sequences of the ATMT mutants reached 99%. In addition, the time from DNA extraction to flanking sequence analysis was shortened to 2 days with about 6 dollars each sample.

  1. AT Cnc: A SECOND DWARF NOVA WITH A CLASSICAL NOVA SHELL

    SciTech Connect

    Shara, Michael M.; Mizusawa, Trisha; Zurek, David; Wehinger, Peter; Martin, Christopher D.; Neill, James D.; Forster, Karl; Seibert, Mark

    2012-10-20

    We are systematically surveying all known and suspected Z Cam-type dwarf novae for classical nova shells. This survey is motivated by the discovery of the largest known classical nova shell, which surrounds the archetypal dwarf nova Z Camelopardalis. The Z Cam shell demonstrates that at least some dwarf novae must have undergone classical nova eruptions in the past, and that at least some classical novae become dwarf novae long after their nova thermonuclear outbursts, in accord with the hibernation scenario of cataclysmic binaries. Here we report the detection of a fragmented 'shell', 3 arcmin in diameter, surrounding the dwarf nova AT Cancri. This second discovery demonstrates that nova shells surrounding Z Cam-type dwarf novae cannot be very rare. The shell geometry is suggestive of bipolar, conical ejection seen nearly pole-on. A spectrum of the brightest AT Cnc shell knot is similar to that of the ejecta of the classical nova GK Per, and of Z Cam, dominated by [N II] emission. Galaxy Evolution Explorer FUV imagery reveals a similar-sized, FUV-emitting shell. We determine a distance of 460 pc to AT Cnc, and an upper limit to its ejecta mass of {approx}5 Multiplication-Sign 10{sup -5} M {sub Sun }, typical of classical novae.

  2. Investigation on Effect of Material Hardness in High Speed CNC End Milling Process.

    PubMed

    Dhandapani, N V; Thangarasu, V S; Sureshkannan, G

    2015-01-01

    This research paper analyzes the effects of material properties on surface roughness, material removal rate, and tool wear on high speed CNC end milling process with various ferrous and nonferrous materials. The challenge of material specific decision on the process parameters of spindle speed, feed rate, depth of cut, coolant flow rate, cutting tool material, and type of coating for the cutting tool for required quality and quantity of production is addressed. Generally, decision made by the operator on floor is based on suggested values of the tool manufacturer or by trial and error method. This paper describes effect of various parameters on the surface roughness characteristics of the precision machining part. The prediction method suggested is based on various experimental analysis of parameters in different compositions of input conditions which would benefit the industry on standardization of high speed CNC end milling processes. The results show a basis for selection of parameters to get better results of surface roughness values as predicted by the case study results.

  3. Investigation on Effect of Material Hardness in High Speed CNC End Milling Process

    PubMed Central

    Dhandapani, N. V.; Thangarasu, V. S.; Sureshkannan, G.

    2015-01-01

    This research paper analyzes the effects of material properties on surface roughness, material removal rate, and tool wear on high speed CNC end milling process with various ferrous and nonferrous materials. The challenge of material specific decision on the process parameters of spindle speed, feed rate, depth of cut, coolant flow rate, cutting tool material, and type of coating for the cutting tool for required quality and quantity of production is addressed. Generally, decision made by the operator on floor is based on suggested values of the tool manufacturer or by trial and error method. This paper describes effect of various parameters on the surface roughness characteristics of the precision machining part. The prediction method suggested is based on various experimental analysis of parameters in different compositions of input conditions which would benefit the industry on standardization of high speed CNC end milling processes. The results show a basis for selection of parameters to get better results of surface roughness values as predicted by the case study results. PMID:26881267

  4. Step-and-Repeat Nanoimprint-, Photo- and Laser Lithography from One Customised CNC Machine

    NASA Astrophysics Data System (ADS)

    Greer, Andrew IM; Della-Rosa, Benoit; Khokhar, Ali Z.; Gadegaard, Nikolaj

    2016-03-01

    The conversion of a computer numerical control machine into a nanoimprint step-and-repeat tool with additional laser- and photolithography capacity is documented here. All three processes, each demonstrated on a variety of photoresists, are performed successfully and analysed so as to enable the reader to relate their known lithography process(es) to the findings. Using the converted tool, 1 cm2 of nanopattern may be exposed in 6 s, over 3300 times faster than the electron beam equivalent. Nanoimprint tools are commercially available, but these can cost around 1000 times more than this customised computer numerical control (CNC) machine. The converted equipment facilitates rapid production and large area micro- and nanoscale research on small grants, ultimately enabling faster and more diverse growth in this field of science. In comparison to commercial tools, this converted CNC also boasts capacity to handle larger substrates, temperature control and active force control, up to ten times more curing dose and compactness. Actual devices are fabricated using the machine including an expanded nanotopographic array and microfluidic PDMS Y-channel mixers.

  5. Step-and-Repeat Nanoimprint-, Photo- and Laser Lithography from One Customised CNC Machine.

    PubMed

    Greer, Andrew Im; Della-Rosa, Benoit; Khokhar, Ali Z; Gadegaard, Nikolaj

    2016-12-01

    The conversion of a computer numerical control machine into a nanoimprint step-and-repeat tool with additional laser- and photolithography capacity is documented here. All three processes, each demonstrated on a variety of photoresists, are performed successfully and analysed so as to enable the reader to relate their known lithography process(es) to the findings. Using the converted tool, 1 cm(2) of nanopattern may be exposed in 6 s, over 3300 times faster than the electron beam equivalent. Nanoimprint tools are commercially available, but these can cost around 1000 times more than this customised computer numerical control (CNC) machine. The converted equipment facilitates rapid production and large area micro- and nanoscale research on small grants, ultimately enabling faster and more diverse growth in this field of science. In comparison to commercial tools, this converted CNC also boasts capacity to handle larger substrates, temperature control and active force control, up to ten times more curing dose and compactness. Actual devices are fabricated using the machine including an expanded nanotopographic array and microfluidic PDMS Y-channel mixers.

  6. cncRNAs: Bi-functional RNAs with protein coding and non-coding functions.

    PubMed

    Kumari, Pooja; Sampath, Karuna

    2015-12-01

    For many decades, the major function of mRNA was thought to be to provide protein-coding information embedded in the genome. The advent of high-throughput sequencing has led to the discovery of pervasive transcription of eukaryotic genomes and opened the world of RNA-mediated gene regulation. Many regulatory RNAs have been found to be incapable of protein coding and are hence termed as non-coding RNAs (ncRNAs). However, studies in recent years have shown that several previously annotated non-coding RNAs have the potential to encode proteins, and conversely, some coding RNAs have regulatory functions independent of the protein they encode. Such bi-functional RNAs, with both protein coding and non-coding functions, which we term as 'cncRNAs', have emerged as new players in cellular systems. Here, we describe the functions of some cncRNAs identified from bacteria to humans. Because the functions of many RNAs across genomes remains unclear, we propose that RNAs be classified as coding, non-coding or both only after careful analysis of their functions.

  7. Overview of Sustainability Studies of CNC Machining and LAM of Stainless Steel

    NASA Astrophysics Data System (ADS)

    Nyamekye, Patricia; Leino, Maija; Piili, Heidi; Salminen, Antti

    Laser additive manufacturing (LAM), known also as 3D printing, is a powder bed fusion (PBF) type of additive manufacturing (AM) technology used to fabricate metal parts out of metal powder. The development of the technology from building prototype parts to functional parts has increased remarkably in 2000s. LAM of metals is promising technology that offers new opportunities to manufacturing and to resource efficiency. However, there is only few published articles about its sustainability. Aim in this study was to create supply chain model of LAM and CNC machining and create a methodology to carry out a life cycle inventory (LCI) data collection for these techniques. The methodology of the study was literature review and scenario modeling. The acquisition of raw material, production phase and transportations were used as basis of comparison. The modelled scenarios were fictitious and created for industries, like aviation and healthcare that often require swift delivery as well as customized parts. The results of this study showed that the use of LAM offers a possibility to reduce downtime in supply chains of spare parts and reduce part inventory more effectively than CNC machining. Also the gap between customers and business is possible to be shortened with LAM thus offering a possibility to reduce emissions due to less transportation. The results also indicated weight reduction possibility with LAM due to optimized part geometry which allow lesser amount of metallic powder to be used in making parts.

  8. GROUND-BASED TRANSIT OBSERVATIONS OF THE SUPER-EARTH 55 Cnc e

    SciTech Connect

    De Mooij, E. J. W.; López-Morales, M.; Karjalainen, R.; Hrudkova, M.; Jayawardhana, Ray

    2014-12-20

    We report the first ground-based detections of the shallow transit of the super-Earth exoplanet 55 Cnc e using a 2 m class telescope. Using differential spectrophotometry, we observed one transit in 2013 and another in 2014, with average spectral resolutions of ∼700 and ∼250, spanning the Johnson BVR photometric bands. We find a white light planet-to-star radius ratio of 0.0190{sub −0.0027}{sup +0.0023} from the 2013 observations and 0.0200{sub −0.0018}{sup +0.0017} from the 2014 observations. The two data sets combined result in a radius ratio of 0.0198{sub −0.0014}{sup +0.0013}. These values are all in agreement with previous space-based results. Scintillation noise in the data prevents us from placing strong constraints on the presence of an extended hydrogen-rich atmosphere. Nevertheless, our detections of 55 Cnc e in transit demonstrate that moderate-sized telescopes on the ground will be capable of routine follow-up observations of super-Earth candidates discovered by the Transiting Exoplanet Survey Satellite around bright stars. We expect it also will be possible to place constraints on the atmospheric characteristics of those planets by devising observational strategies to minimize scintillation noise.

  9. Performance Evaluation of Multi-Axis CNC Machine Tools by Interferometry Principle using Laser Calibration System

    NASA Astrophysics Data System (ADS)

    Barman, S.; Sen, R.

    2012-06-01

    Advancement in digital electronics and microprocessors has made the manufacturing sector capable to generate complex components within small tolerance zone in nanometre range at one machining center. All motion control systems have some form of position feed back system fitted with the machine. But the systems are not perfectly accurate due to the errors in the positioning performance of the machine tools which will change over time to time due to wear, damage and environmental effect. The complex structure of multi-axis CNC machine tools produces an inaccuracy at the tool tip caused by kinematic parameter deviations resulting in manufacturing errors, assembly error and quasi-static errors. Analysis of these errors using a laser measurement system provides the user with a way to achieve better accuracy, and hence higher quality output from these processes. In this paper, characteristic of the positioning errors of the axes of multi-axis CNC machine tools and the technique to measure the errors by a laser interferometer calibration system have been discussed and the positioning accuracy of the machine each axis has been verified.

  10. CNC machine tool's wear diagnostic and prognostic by using dynamic Bayesian networks

    NASA Astrophysics Data System (ADS)

    Tobon-Mejia, D. A.; Medjaher, K.; Zerhouni, N.

    2012-04-01

    The failure of critical components in industrial systems may have negative consequences on the availability, the productivity, the security and the environment. To avoid such situations, the health condition of the physical system, and particularly of its critical components, can be constantly assessed by using the monitoring data to perform on-line system diagnostics and prognostics. The present paper is a contribution on the assessment of the health condition of a computer numerical control (CNC) tool machine and the estimation of its remaining useful life (RUL). The proposed method relies on two main phases: an off-line phase and an on-line phase. During the first phase, the raw data provided by the sensors are processed to extract reliable features. These latter are used as inputs of learning algorithms in order to generate the models that represent the wear's behavior of the cutting tool. Then, in the second phase, which is an assessment one, the constructed models are exploited to identify the tool's current health state, predict its RUL and the associated confidence bounds. The proposed method is applied on a benchmark of condition monitoring data gathered during several cuts of a CNC tool. Simulation results are obtained and discussed at the end of the paper.

  11. Fast manufacturing of E-ELT mirror segments using CNC polishing

    NASA Astrophysics Data System (ADS)

    Gray, C.; Baker, I.; Davies, G.; Evans, R.; Field, N.; Fox-Leonard, T.; Messelink, W.; Mitchell, J.; Rees, P.; Waine, S.; Walker, D. D.; Yu, G.

    2013-09-01

    We report on the first-ever demonstration of grinding and polishing full-size, off-axis aspheric, mirror segments as prototypes for an extremely large telescope, processed entirely in the final hexagonal shape. We first describe the overall strategy for controlling form and mid spatial frequencies, at levels in the vicinity of <10nm RMS surface. This relies first on direct CNC grinding of the base-form of these 1.4m segments, using the Cranfield BoX™ machine. The segments are then mounted on a custom designed (Optic Glyndwr Optoelectronic Engineering Group) three segment hydraulic support, and CNC polished on a Zeeko IRP 1600 machine using a variety of custom tooling. We overview the fullaperture and sub-aperture metrology techniques used to close the process-loop and certify quality, all of which operate with the segment in-situ on the IRP1600. We then focus on the pristine edge-definition achieved by the combination of tool-lift and smoothing operations; results never previously demonstrated on full-size pre-cut hexagonal segments. Finally, the paper discusses the feasibility of scaling the process to deliver 931 segments in seven years, as required for the E-ELT project.

  12. [Imaging modalities and therapy options in patients with acute flank pain].

    PubMed

    Grosse, A; Grosse, C

    2014-07-01

    The objective of this article is the description of imaging techniques for the evaluation of patients with acute flank pain and suspicion of urolithiasis and the impact of these techniques in the therapy management of patients with calculi.

  13. Complete mitochondrial genome sequence of Chestnut-flanked white-eye (Zosterops erythropleurus).

    PubMed

    Li, Yumei; Yao, Jiyuan; Zhao, Xin; Li, Lingyu; Yan, Shouqing

    2016-09-01

    The Chestnut-flanked white-eye (Zosterops erythropleurus) is a species of family Zosteropidae, which is distributed widely in the world. In the present study, the complete mitochondrial genome sequence of Chestnut-flanked white-eye was determined. It has a total length of 17 811 bp, and contains 13 protein-coding genes, 22 tRNA genes, 2 ribosome RNA genes and 2 control regions. The total base composition was 30.2% for A, 31.0% for C, 14.2% for G and 24.6% for T. The phylogenetic tree of Chestnut-flanked white-eye and 13 other species belonging to the order Passeriformes was built. The molecular data presented here will be useful to study the evolutionary relationships and genetic diversity of Chestnut-flanked white-eye.

  14. Window type: 2x3 fixed multipaned steel window flanked by 1x3 ...

    Library of Congress Historic Buildings Survey, Historic Engineering Record, Historic Landscapes Survey

    Window type: 2x3 fixed multipaned steel window flanked by 1x3 multipaned steel casements. Concrete sill and spandrel also illustrated. Building 43, facing east - Harbor Hills Housing Project, 26607 Western Avenue, Lomita, Los Angeles County, CA

  15. Advanced CNC and CAM Series. Educational Resources for the Machine Tool Industry. Course Syllabi, Instructor's Handbook [and] Student Laboratory Manual.

    ERIC Educational Resources Information Center

    Texas State Technical Coll. System, Waco.

    This package consists of course syllabi, an instructor's handbook, and student laboratory manual for a 1-year vocational training program to prepare students for entry-level positions as advanced computer numerical control (CNC) and computer-assisted manufacturing (CAM) technicians.. The program was developed through a modification of the DACUM…

  16. Hydrogenation of imines catalysed by ruthenium(II) complexes based on lutidine-derived CNC pincer ligands.

    PubMed

    Hernández-Juárez, Martín; Vaquero, Mónica; Álvarez, Eleuterio; Salazar, Verónica; Suárez, Andrés

    2013-01-14

    The preparation of new Ru(II) complexes incorporating fac-coordinated lutidine-derived CNC ligands is reported. These derivatives are selectively deprotonated by (t)BuOK at one of the methylene arms of the pincer, leading to catalytically active species in the hydrogenation of imines.

  17. Comprehensive reliability allocation method for CNC lathes based on cubic transformed functions of failure mode and effects analysis

    NASA Astrophysics Data System (ADS)

    Yang, Zhou; Zhu, Yunpeng; Ren, Hongrui; Zhang, Yimin

    2015-03-01

    Reliability allocation of computerized numerical controlled(CNC) lathes is very important in industry. Traditional allocation methods only focus on high-failure rate components rather than moderate failure rate components, which is not applicable in some conditions. Aiming at solving the problem of CNC lathes reliability allocating, a comprehensive reliability allocation method based on cubic transformed functions of failure modes and effects analysis(FMEA) is presented. Firstly, conventional reliability allocation methods are introduced. Then the limitations of direct combination of comprehensive allocation method with the exponential transformed FMEA method are investigated. Subsequently, a cubic transformed function is established in order to overcome these limitations. Properties of the new transformed functions are discussed by considering the failure severity and the failure occurrence. Designers can choose appropriate transform amplitudes according to their requirements. Finally, a CNC lathe and a spindle system are used as an example to verify the new allocation method. Seven criteria are considered to compare the results of the new method with traditional methods. The allocation results indicate that the new method is more flexible than traditional methods. By employing the new cubic transformed function, the method covers a wider range of problems in CNC reliability allocation without losing the advantages of traditional methods.

  18. One-pot green fabrication and antibacterial activity of thermally stable corn-like CNC/Ag nanocomposites

    NASA Astrophysics Data System (ADS)

    Yu, Hou-Yong; Qin, Zong-Yi; Sun, Bin; Yan, Chen Feng; Yao, Ju-Ming

    2014-01-01

    Corn-like cellulose nanocrystals/silver (CNC/Ag) nanocomposites were prepared by formic acid/hydrochloric acid hydrolysis of commercial microcrystalline cellulose (MCC), and redox reaction with silver ammonia aqueous solution (Ag(NH3)2(OH)) in one-pot green synthesis, in which the preparation and modification of CNCs were performed simultaneously and the resultant modified CNCs could be as reducing, stabilizing and supporting agents for silver nanoparticles. The influences of the Ag+ ion concentrations on the morphology, microstructure, and properties of the CNC/Ag nanocomposites were investigated. It is found that corn-like CNC/Ag nanocomposites containing Ag nanoparticles with diameter of about 20-40 nm were obtained. Compared to the MCCs, high crystallinity of 88.5 % and the maximum degradation temperature ( T max) of 364.5 °C can be achieved. Moreover, the CNC/Ag nanocomposites showed strong antibacterial activity against both Gram-negative Escherichia coli and Gram-positive Staphylococcus aureus. Furthermore, such nanocomposites can act as bifunctional nanofillers to improve thermal stability, mechanical property, and antibacterial activity of commercial poly(3-hydroxybutyrate-co-3-hydroxyvalerate) and poly(lactic acid).

  19. Effect of flanking bases on quadruplex stability and Watson-Crick duplex competition.

    PubMed

    Arora, Amit; Nair, Divya R; Maiti, Souvik

    2009-07-01

    Guanine-rich DNA sequences have the ability to fold into four-stranded structures called G-quadruplexes, and are considered as promising anticancer targets. Although the G-quadruplex structure is composed of quartets and interspersed loops, in the genome it is also flanked on each side by numerous bases. The effect of loop length and composition on quadruplex conformation and stability has been well investigated in the past, but the effect of flanking bases on quadruplex stability and Watson-Crick duplex competition has not been addressed. We have studied in detail the effect of flanking bases on quadruplex stability and on duplex formation by the G-quadruplex in the presence of complementary strands using the quadruplex-forming sequence located in the promoter region of the c-kit oncogene. The results obtained from CD, thermal difference spectrum and UV melting demonstrated the effect of flanking bases on quadruplex structure and stability. With the increase in flank length, the increase in the more favorable DeltaH(vH) is accompanied by a striking increase in the unfavorable DeltaS(vH), which resulted in a decrease in the overall DeltaG(vH) of quadruplex formation. Furthermore, CD, fluorescence and isothermal titration calorimetry studies demonstrated that the propensity to attain quadruplex structure decreases with increasing flank length.

  20. Study on grinding of free-form optics surface in three-axis CNC machine

    NASA Astrophysics Data System (ADS)

    Yang, Haicheng; Zhang, Yun-long; Zhang, Feng; Wang, Zhibin; Bao, Long-xiang; Su, Ying; Guo, Rui; Liu, Xuan-min

    2014-08-01

    Due to the glass is a type of brittle material, so the high-precision free-form optics of glass material is usually machined by the technical of grinding. In this paper, for the characteristics of the diamond grinding wheel, analyzing the grinding path of free-form optics and mathematical model of the path is established based on the three-axis CNC grinding device. Moreover, the cause of the interference in the process of grinding is analyzed and the methods of avoiding. Finally, based on the above analysis results, through the experiment, the free-form optics surface accuracy was reached to 3.6um, realize the machining of the free-form optics.

  1. Development of Sequential Optimization Method for CNC Turning Based on In-Process Tool Wear Monitoring

    NASA Astrophysics Data System (ADS)

    Moriwaki, Toshimichi; Tangjitsitcharoen, Somkiat; Shibasaka, Toshiroh

    A system and procedures are developed to optimize the cutting speed for CNC turning. The current amount of tool wear is estimated based on the in-process cutting force measurement by applying the method developed and reported previously. Once the tool wear is estimated for the different cutting speeds, the coefficients of the Taylor’s tool life equation are determined or successively modified based on the estimated tool wear data. The optimum cutting speed is obtained by referring to the criteria of either the minimum production cost or the maximum production rate. The system developed is applied to actual turning of carbon steel with coated carbide tools, and it has been proved that the system runs satisfactory. The method developed here can be readily applied to unknown combinations of the work material and the tool, as it searches the optimum cutting conditions automatically while the process is going on.

  2. Optimization of Operation Sequence in CNC Machine Tools Using Genetic Algorithm

    NASA Astrophysics Data System (ADS)

    Abu Qudeiri, Jaber; Yamamoto, Hidehiko; Ramli, Rizauddin

    The productivity of machine tools is significantly improved by using microcomputer based CAD/CAM systems for NC program generation. Currently, many commercial CAD/CAM packages that provide automatic NC programming have been developed and applied to various cutting processes. Many cutting processes machined by CNC machine tools. In this paper, we attempt to find an efficient solution approach to determine the best sequence of operations for a set of operations that located in asymmetrical locations and different levels. In order to find the best sequence of operations that achieves the shortest cutting tool travel path (CTTP), genetic algorithm is introduced. After the sequence is optimized, the G-codes that use to code for the travel time is created. CTTP can be formulated as a special case of the traveling salesman problem (TSP). The incorporation of genetic algorithm and TSP can be included in the commercial CAD/CAM packages to optimize the CTTP during automatic generation of NC programs.

  3. Optimization of process parameters in CNC turning of aluminium alloy using hybrid RSM cum TLBO approach

    NASA Astrophysics Data System (ADS)

    Rudrapati, R.; Sahoo, P.; Bandyopadhyay, A.

    2016-09-01

    The main aim of the present work is to analyse the significance of turning parameters on surface roughness in computer numerically controlled (CNC) turning operation while machining of aluminium alloy material. Spindle speed, feed rate and depth of cut have been considered as machining parameters. Experimental runs have been conducted as per Box-Behnken design method. After experimentation, surface roughness is measured by using stylus profile meter. Factor effects have been studied through analysis of variance. Mathematical modelling has been done by response surface methodology, to made relationships between the input parameters and output response. Finally, process optimization has been made by teaching learning based optimization (TLBO) algorithm. Predicted turning condition has been validated through confirmatory experiment.

  4. The Structure and Principles of Work Intellectual Processing Control System on CNC

    NASA Astrophysics Data System (ADS)

    Nekrasov, R. Y.; Putilova, U. S.; Starikov, A. I.; Soloviev, I. V.; Bekareva, O. V.

    2016-04-01

    The high rate of technological progress imposes stringent quality demands of engineering production. The main requirement is dimensional accuracy of metal-cutting equipment with a minimal needed operating costs during the period of operation. The article considers the problem of increasing the accuracy of processing engineering products on CNC. The authors have proposed a solution of the problem by providing entering operational adjustment to the control of the trajectory of the executive bodies of the machine. The necessity of creation of mathematical models of processes in an automated process system operations (APSO). Based on the research, authors had proposed that a generalized scheme of diagnosis and operation input of corrections and approximate mathematical models of the individual processes of diagnosis.

  5. Improved precision on the radius of the nearby super-Earth 55 Cnc e

    NASA Astrophysics Data System (ADS)

    Gillon, M.; Demory, B.-O.; Benneke, B.; Valencia, D.; Deming, D.; Seager, S.; Lovis, Ch.; Mayor, M.; Pepe, F.; Queloz, D.; Ségransan, D.; Udry, S.

    2012-03-01

    We report on new transit photometry for the super-Earth 55 Cnc e obtained with Warm Spitzer/IRAC at 4.5 μm. An individual analysis of these new data leads to a planet radius of 2.21-0.16+0.15 R⊕, which agrees well with the values previously derived from the MOST and Spitzer transit discovery data. A global analysis of both Spitzer transit time-series improves the precision on the radius of the planet at 4.5 μm to 2.20 ± 0.12 R⊕. We also performed an independent analysis of the MOST data, paying particular attention to the influence of the systematic effects of instrumental origin on the derived parameters and errors by including them in a global model instead of performing a preliminary detrending-filtering processing. We deduce an optical planet radius of 2.04 ± 0.15 R⊕ from this reanalysis of MOST data, which is consistent with the previous MOST result and with our Spitzer infrared radius. Assuming the achromaticity of the transit depth, we performed a global analysis combining Spitzer and MOST data that results in a planet radius of 2.17 ± 0.10 R⊕ (13 820 ± 620 km). These results point to 55 Cnc e having a gaseous envelope overlying a rocky nucleus, in agreement with previous works. A plausible composition for the envelope is water which would be in super-critical form given the equilibrium temperature of the planet. The photometric time series used in this work are only available at the CDS via anonymous ftp to cdsarc.u-strasbg.fr (130.79.128.5) or via http://cdsarc.u-strasbg.fr/viz-bin/qcat?J/A+A/539/A28

  6. Inversion of coeval shear and normal stress of Piton de la Fournaise flank displacement

    NASA Astrophysics Data System (ADS)

    Tridon, Marine; Cayol, Valérie; Froger, Jean-Luc; Augier, Aurélien; Bachèlery, Patrick

    2016-11-01

    The April 2007 eruption of Piton de la Fournaise was the biggest volcano eruptive crisis of the 20th and 21st centuries. Interferometric synthetic aperture radar (InSAR) captured a large coeruptive seaward displacement on the volcano's eastern flank, which continued for more than a year at a decreasing rate. Coeruptive uplift and posteruptive subsidence were also observed. While it is generally agreed that flank displacement is induced by fault slip, we suggest that this flank displacement might have been induced by a sheared sill, based on observations of sheared sills at Piton des Neiges. To test this hypothesis, we develop a new method to invert a quadrangular curved source submitted to simultaneous pressure and shear stress changes. This method, based on boundary elements, is applied to data acquired along six Envisat orbits covering a 14 month period subsequent to the April 2007 eruption. Posteruptive displacement is well explained by closure and slip of a large (5 km by 8 km) and shallow (500 m) trapezoidal fracture parallel to the flank and probably coincident with a lithological discontinuity. We investigate whether thermal contraction or degassing of a coeruptive sill can explain the displacement. Such a sill would have to be 10 times thicker than inferred from the coeruptive uplift and solidification time 10 times shorter ( 20 days) than the duration of the posteruptive subsidence (24 to 33 months). Instead, we propose that the posteruptive eastern flank displacement is due to the compaction and ongoing slow slip on a shallow detachment fault.

  7. Isolation and characterization of the 5'-flanking sequence of the human ocular lens MIP gene.

    PubMed

    Wang, X Y; Ohtaka-Maruyama, C; Pisano, M M; Jaworski, C J; Chepelinsky, A B

    1995-12-29

    The MIP (major intrinsic protein) gene, a member of an ancient family of membrane channel genes, encodes the predominant fiber cell membrane protein of the ocular lens. Its specific expression in the lens fibers is temporally and spatially regulated during development. To study the regulation of expression of MIP and delineate the regulatory elements underlying its tissue specificity and ontogenic profile, we have cloned 2840 bp of the human MIP 5'-flanking sequence. The human MIP 5'-flanking sequence contains three complete Alu repetitive elements in tandem at position between nt -1699 and -2684 (nt -1699/-2684). These Alu elements appear to have had a complex evolutionary history with insertions at different times. We have fused DNA fragments containing MIP 5'-flanking sequences to the bacterial cat reporter gene encoding chloramphenicol acetyltransferase and assayed them in primary cultures of chicken lens cells. We have mapped two negative regulatory regions in the human MIP 5'-flanking sequences -1564/-1696 and -948/-1000. We demonstrated that the human MIP 5'-flanking sequence -253/+42 contains a functional promoter in lens cells but is inactive in kidney epithelial cells or mouse fibroblasts, suggesting that this sequence contains regulatory elements responsible for the lens-specific expression of MIP.

  8. Ground beef patties prepared from brisket, flank and plate have unique fatty acid and sensory characteristics.

    PubMed

    Blackmon, Terronica; Miller, Rhonda K; Kerth, Chris; Smith, Stephen B

    2015-05-01

    We hypothesized that unique ground beef products could be formulated from brisket, flank, and plate primals. Primals were taken from 4 USDA Select carcasses from conventionally produced cattle, selected at random in a commercial packing plant. Lean and fat trims were separated, and ground beef was formulated from each primal to contain 10, 20, or 30% total fat. Brisket patties contained higher proportions of monounsaturated fatty acids and less saturated fatty acids than flank patties. There were no differences in n-6 or n-3 fatty acids across primal type or fat level. After cooking, brisket patties had higher bloody/serumy and fat-like descriptor values than flank patties. Plate patties generated higher amounts of lipid-derived volatiles than patties from the brisket or flank. Brisket patties generally had higher amounts of pleasant headspace volatiles whereas the plate relied more heavily on Maillard-derived volatiles than flank patties. We conclude that individual primals can be used to formulate ground beef with unique compositional and flavor characteristics.

  9. Magmatism on rift flanks: Insights from ambient noise phase velocity in Afar region

    NASA Astrophysics Data System (ADS)

    Korostelev, Félicie; Weemstra, Cornelis; Leroy, Sylvie; Boschi, Lapo; Keir, Derek; Ren, Yong; Molinari, Irene; Ahmed, Abdulhakim; Stuart, Graham W.; Rolandone, Frédérique; Khanbari, Khaled; Hammond, James O. S.; Kendall, J. M.; Doubre, Cécile; Ganad, Ismail Al; Goitom, Berhe; Ayele, Atalay

    2015-04-01

    During the breakup of continents in magmatic settings, the extension of the rift valley is commonly assumed to initially occur by border faulting and progressively migrate in space and time toward the spreading axis. Magmatic processes near the rift flanks are commonly ignored. We present phase velocity maps of the crust and uppermost mantle of the conjugate margins of the southern Red Sea (Afar and Yemen) using ambient noise tomography to constrain crustal modification during breakup. Our images show that the low seismic velocities characterize not only the upper crust beneath the axial volcanic systems but also both upper and lower crust beneath the rift flanks where ongoing volcanism and hydrothermal activity occur at the surface. Magmatic modification of the crust beneath rift flanks likely occurs for a protracted period of time during the breakup process and may persist through to early seafloor spreading.

  10. Mantle Flow, Dynamic Topography and Rift-Flank Uplift of Arabia

    NASA Astrophysics Data System (ADS)

    Daradich, A. L.; Mitrovica, J. X.; Pysklywec, R. N.; Willett, S. D.

    2002-12-01

    The Red Sea is flanked by highlands. To the east, the Arabian platform is broadly tilted along an axis that runs parallel to the sea, and the long tail of high topography has been described as a classic example of `rift-flank uplift' [Wernicke, 1985]. A suite of thermal and mechanical effects have been invoked to derive generic mechanisms for flank uplift and these have been applied, with varying levels of success, to the Arabian case. We propose that dynamic topography supported by large scale mantle flow beneath the Africa-Arabia system contributes significantly to the observed pattern of Arabian rift-flank uplift. Seismic tomographic images indicate the existence of large scale (anomalously slow) heterogeneity originating from the deep mantle under southern Africa and, apparently, connecting to more shallow structure beneath the East African Rift system and the Arabian plate. We predict Arabian topography driven by viscous stresses associated with this buoyant megastructure. We first convert velocity anomalies given by the seismic S-wave model S20RTS [Ritsema et al., 1999] to density anomalies using standard scaling profiles, and then input these into a 2-D mantle convection model. Normal stresses derived from the flow models are then used to compute associated profiles of surface (`dynamic') topography. These profiles reconcile the observed topography of the Arabian platform and they provide an explanation for the distinct geometry of rift-flank uplift across the two sides of the Red Sea. Our calculations do not preclude a contribution to topography from previously described thermal and/or mechanical effects; however, they indicate that future analyses of rift-flank uplift should consider the potential contribution from large scale mantle flow.

  11. The geomorphology of the flanks of the Lord Howe Island volcano, Tasman Sea, Australia

    NASA Astrophysics Data System (ADS)

    Kennedy, D. M.; Brooke, B. P.; Woodroffe, C. D.; Jones, B. G.; Waikari, C.; Nichol, S.

    2011-04-01

    The flanks of mid-ocean volcanoes are inherently unstable features especially in the constructional phase of development when the volcano is active. Lateral and vertical stresses are placed on the volcanic edifice as it builds, with the flanks continuing to be unstable up to at least 1 Ma after volcanism has ceased. The flanks of the Lord Howe Island volcano record this period of greatest instability and a subsequent period in which marine and subaerial erosion have dominated its geomorphic evolution. Lord Howe Island lies in the Tasman Sea of the Southern Pacific region and is the subaerial remnant of a Miocene mid-ocean volcano. The island has only recently entered reef building seas and therefore has been subject to marine erosive processes over the past 5-6 Ma. The island is unique as it sits on the stable drowned continental crust of the Lord Howe Rise rather than oceanic crust like many other mid-plate basaltic islands. Multibeam sonar bathymetry data were collected to a depth of 3500 m where the island flanks grade into the surrounding planar sea floor. Several slump features are evident, the largest being over 130 km 2 in area. These features are inferred to be old (late Tertiary) based on an extensive cover of marine sediment as indicated by low multibeam backscatter intensity and subdued topography. Most likely the slumps formed during the immediate post-eruptive stage of volcano evolution, before the bulk of the subaerial portion of the volcano was removed by marine erosion. Flank processes are now dominated by the deposition of carbonate sediment composed of mollusc and foraminiferal remains. Based on radiocarbon and stable isotope analyses of a sediment core (760 m depth) collected on a trough in the centre of the volcanic edifice, Quaternary sediment was likely deposited predominantly during glacial periods. The erosional morphology, sediment cover and tectonic stability of the region suggest that the flanks of the volcano are at present relatively

  12. DNA double-strand break repair: Genetic determinants of flanking crossing-over

    SciTech Connect

    Kusano, Kohji; Sunohara, Yukari; Kobayashi, Ichizo; Takahashi, Noriko; Yoshikura, Hiroshi )

    1994-02-01

    Whether or not homologous interaction of two DNA molecules results in crossing-over of the flanking sequences is an important decision in view of genome organization. Several homologous recombination models, including the double-strand break repair models, explain this decision as choice between two alternative modes of resolution of Holliday-type intermediates. The authors have demonstrated that a double-strand gap can be repaired through gene conversion copying a homologous duplex, as predicted by the double-strand break repair models, in the RecE pathway of Escherichia coli. This gap repair is often accompanied by crossing-over of the flanking sequences. Mutations in ruvC and recG, whose products interact with Holliday structures in vitro, do not block double-strand gap repair or its association with flanking crossing-over. However, two mutations in the recJ gene, which encodes a single-strand 5[prime][yields]3[prime] exonuclease, severely decrease association of flanking crossing-over. Two mutations in the recQ gene, which encodes a helicase, moderately decrease association of flanking crossing-over by themselves and suppress the severe effect of a recJ mutation. Similar relationships of recJ and recQ mutations are observed in cell survival after ultraviolet light irradiation, [gamma]-ray irradiation, and H[sub 2]O[sub 2] treatment. The authors discuss how cooperation of the recQ gene product and the recJ gene product brings about double-strand break repair accompanied by flanking crossing-over. They also discuss how this reaction is related to repair of chromosome damages.

  13. Stabilization of volcanic flanks by dike intrusion: An example from Kilauea

    USGS Publications Warehouse

    Delaney, P.T.; Denlinger, R.P.

    1999-01-01

    Dike propagation and dilation increases the compression of adjacent rocks. On volcanoes, especially oceanic shields, dikes are accordingly thought to be structurally destabilizing. As compression is incremented, volcanic flanks are driven outward or downslope and thus increase their susceptibility to destructive earthquakes and giant landslides. We show, however, that the 2-m-thick dike emplaced along the east rift zone of Kilauea in 1983 actually stabilized that volcano's flank. Specifically, production of flank earthquakes dropped more than twofold after 1983 as maximum downslope motion slowed to 6 cm ?? year-1 from approximately 40 cm ?? year-1 during 1980-1982. As much as 65 cm of deflationary subsidence above Kilauea's summit and upper rift zones accompanied the dike intrusion. According to recent estimates, this deflation corresponds to a reduction in magma-reservoir pressure of approximately 4 MPa, probably about as much as the driving pressure of the 1983 dike. The volume of the dike, approximately 0.10-0.15 km3, is orders of magnitude less than the estimated 200- to 250-km3 volume of Kilauea's reservoir of magma and nearby hot, mushy rock. Thus, deflation of that reservoir reduces the compressional load on the flank over a much larger area than intrusion of the dike adds to it, particularly at the dominant depth of seismicity, 8-9 km. A Coulomb block model for flank motion during intervals between major earthquakes requires the low-angle fault beneath Kilauea's flank to exhibit slip weakening, conducive to earthquake instability. Accordingly, the triggering mechanism of destructive earthquakes, several of which have struck Hawaii during the past 150 years, need not require stresses accumulated by dike intrusions.

  14. Comparison of flank modification on Ascraeus and Arsia Montes volcanoes, Mars

    NASA Technical Reports Server (NTRS)

    Zimbelman, James R.

    1993-01-01

    Geologic mapping of the Tharsis Montes on Mars is in progress as part of the Mars Geologic Mapping Program of NASA. Mapping of the southern flanks of Ascraeus Mons at 1:500,000 scale was undertaken first followed by detailed mapping of Arsia Mons; mapping of Pavonis Mons will begin later this year. Results indicate that each of the Tharsis volcanoes displays unique variations on the general 'theme' of a martian shield volcano. Here we concentrate on the flank characteristics on Ascraeus Mons and Arsia Mons, the northernmost and southernmost of the Tharsis Montes, as illustrative of the most prominent trends.

  15. Upwelling of hydrothermal solutions through ridge flank sediments shown by pore water profiles

    SciTech Connect

    Maris, C.R.P.; Bender, M.L.

    1982-05-07

    High calcium ion and low magnesium ion concentrations in sediment pore waters in cores from the Galapagos Mounds Hydrothermal Field on the flank of the Galapagos Spreading Center are believed to be due to a calcium-magnesium exchange reaction between circulating seawater and basement basalt. The nonlinearity of the calcium ions and magnesium ion gradients indicates that these discharging hydrothermal solutions on the ridge flank are upwelling at the rate of about 1 centimeter per year through the pelagic sediments of the Mounds Field and at about 20 centimeters per year through the hydrothermal mounds themselves.

  16. Far Ultraviolet Spectroscopy of Three Long Period Nova-Like Variables, V363 Aur, AC Cnc and RZ Gru

    NASA Astrophysics Data System (ADS)

    Bisol, Alexandra; Sion, E. M.

    2011-01-01

    We have selected three nova-like variables: V363 Aur, RZ Gru and AC Cnc, all of which are UX UMa types, having similar orbital periods well beyond the 3 to 4 hour range where most nova-likes are found. All should have very similar secondary stars given the fact that they their physical parameters are so similar. V363 Aur is a bona fide SW Sex star, and AC Cnc is a probable one, while RZ Gru is not a member of the SW Sex subclass. Our objective is to carry out the first synthetic spectral analysis of far ultraviolet spectra of the three systems using state-of-the-art models both of accretion disks and photospheres. Therefore we shall compare the distances we obtain from the best fitting synthetic spectral models to other distance estimates in the literature. We present model-derived accretion rates and distances for all three systems. The FUV flux range of RZ Gru and V363 Aur is dominated by radiation from an optically thick, steady state, accretion but for AC Cnc, we find that a hot white dwarf accounts for 70% of the FUV flux. We compare the FUV characteristics and physical properties of these three long period nova-like systems to the properties of other nova-likes at shorter periods. This work was supported in part by NSF grant AST0807892 to Villanova University.

  17. Investigation on the flanking transmission of impact sound insulation of floor

    NASA Astrophysics Data System (ADS)

    Semprini, Giovanni; Cocchi, Alessandro

    2004-05-01

    Impact sound pressure level of floors depends, as general rule, on direct sound radiated by the floor excited by a standard tapping machine and on flanking transmission of lateral walls. Depending on the kind of junction between the floor and walls of the receiving room, flanking paths can be more or less important. Requirements of laboratory test specimens are not well specified in EN ISO 140 standards, particularly for junctions of the test floor and lateral walls. In this paper measurements performed at DIENCA laboratory are presented in order to evaluate the influence of flanking transmission on impact sound pressure levels of a standard floor and on impact sound reduction level of standard floor with a resilient layer. Measurements are performed on a 14-cm-thick concrete floor in two different conditions: first connected on two sides of the receiving room and then on all four sides. Impact sound pressure levels and vibration levels are analyzed in order to evaluate the contribution of different transmission paths. As the measurements were carried on in the new facility for measurement of the contribution of the flanking transmission, this facility will be exhaustively presented in the paper.

  18. Geomorphological Map of the Lower NW Flank of Hecates Tholus Volcano, Mars

    NASA Astrophysics Data System (ADS)

    de Pablo, M. A.; Centeno, J. D.

    2012-03-01

    We present our 1:100,000-scale geomorphological map of the NW flank of Hecates Tholus volcano, Mars, by the use of CTX images and HRSC-derived DTM. This map will allow us to study in detail the geology and glacial history of this volcano.

  19. Acute flank pain secondary to urolithiasis: radiologic evaluation and alternate diagnoses.

    PubMed

    Jindal, Gaurav; Ramchandani, Parvati

    2007-05-01

    This article discusses the radiologic management of the patient who has acute flank pain. It describes the evolution of radiologic imaging in patients who present with acute symptoms caused by suspected urolithiasis, the advantages of unenhanced helical CT and the limitations of abdominal radiography, intravenous urography, and ultrasonography in this setting, and the alternative diagnoses encountered within the urinary tract, abdomen, and pelvis.

  20. Hazard potential of volcanic flank collapses raised by new megatsunami evidence.

    PubMed

    Ramalho, Ricardo S; Winckler, Gisela; Madeira, José; Helffrich, George R; Hipólito, Ana; Quartau, Rui; Adena, Katherine; Schaefer, Joerg M

    2015-10-01

    Large-scale gravitational flank collapses of steep volcanic islands are hypothetically capable of triggering megatsunamis with highly catastrophic effects. Yet, evidence for the generation and impact of collapse-triggered megatsunamis and their high run-ups remains scarce or is highly controversial. Therefore, doubts remain on whether island flank failures truly generate enough volume flux to trigger giant tsunamis, leading to diverging opinions concerning the real hazard potential of such collapses. We show that one of the most prominent oceanic volcanoes on Earth-Fogo, in the Cape Verde Islands-catastrophically collapsed and triggered a megatsunami with devastating effects ~73,000 years ago. Our deductions are based on the recent discovery and cosmogenic (3)He dating of tsunamigenic deposits found on nearby Santiago Island, which attest to the impact of this giant tsunami and document wave run-up heights exceeding 270 m. The evidence reported here implies that Fogo's flank failure involved at least one fast and voluminous event that led to a giant tsunami, in contrast to what has been suggested before. Our observations therefore further demonstrate that flank collapses may indeed catastrophically happen and are capable of triggering tsunamis of enormous height and energy, adding to their hazard potential.

  1. 7. INTERIOR LIVING ROOM SHOWING 6LIGHT FRONT DOOR FLANKED BY ...

    Library of Congress Historic Buildings Survey, Historic Engineering Record, Historic Landscapes Survey

    7. INTERIOR LIVING ROOM SHOWING 6-LIGHT FRONT DOOR FLANKED BY ONE OF TWO 6-LIGHT OVER 1-LIGHT SASH WINDOWS AT PHOTO RIGHT, AND OPEN DOORWAY TO BEDROOM NUMBER ONE (AND BEDROOM NUMBER TWO IN BACKGROUND) AT PHOTO LEFT. VIEW TO NORTH. - Rush Creek Hydroelectric System, Worker Cottage, Rush Creek, June Lake, Mono County, CA

  2. Rift flank segmentation, basin initiation and propagation: a neotectonic example from Lake Baikal

    USGS Publications Warehouse

    Agar, S.M.; Klitgord, Kim D.

    1995-01-01

    New surficial data (field, Landsat TM and topography) define morpho-tectonic domains and rift flank segmentation in the Ol'khon region of the Central Baikal rift. Deformation, drainage and depositional patterns indicate a change in the locus of active extension that may relate to a recent (flank graben has propagated southwards along the rift flank and is still actively fragmenting. These surficial data are used to constrain a model for the time-dependent topographic variations during progressive subsidence along a rift flank, involving the transfer of footwall units to hanging-wall domains. Rapid changes in border fault footwall relief in this model are associated with change in the active border fault location with widespread mass-wasting. The model shows that time-dependent histories need to be integrated with flexural uplift models for active normal faults. The active, syn-rift depositional systems of the Ol'khon region provide a valuable analogue for the early evolution of continental margins and the structural controls on syn-rift hydrocarbon sources and reservoirs.

  3. Magmatism on rift flanks: insights from Ambient-Noise Phase-velocity in Afar region

    NASA Astrophysics Data System (ADS)

    Korostelev, Félicie; Weemstra, Cornelis; Leroy, Sylvie; Boschi, Lapo; Ren, Yong; Ahmed, Abdulhakim; Keir, Derek; Stuart, Graham W.; Rolandone, Frédérique; Khanbari, Khaled; Hammond, James O. S.; Kendall, J. Michael; Doubre, Cécile; Ganad, Ismail Al

    2015-04-01

    During the breakup of continent in the presence of magma, strain is commonly assumed to initially occur by border faulting, and progressively migrate in space and time towards axial magma intrusion. Magmatic processes near the rift flanks are commonly ignored. We present phase-velocity maps of the crust and uppermost mantle of the conjugate margins of the southern Red Sea (Afar and Yemen) using ambient noise tomography to constrain crustal modification during breakup. Our images show that the low seismic velocities characterize not only upper crust beneath the axial volcanic systems, but also both upper and lower crust beneath rift flanks where ongoing volcanism and hydrothermal activity occurs at the surface. The results show that magmatic modification of the crust beneath rift flanks likely occurs for a protracted period of time during the breakup process, and may persist through to early seafloor spreading. Since ongoing flank magmatism during breakup impacts the thermal evolution of the lithosphere, it has implications for the subsidence history of the rift.

  4. Sudden aseismic fault slip on the south flank of Kilauea volcano.

    PubMed

    Cervelli, Peter; Segall, Paul; Johnson, Kaj; Lisowski, Michael; Miklius, Asta

    2002-02-28

    One of the greatest hazards associated with oceanic volcanoes is not volcanic in nature, but lies with the potential for catastrophic flank failure. Such flank failure can result in devastating tsunamis and threaten not only the immediate vicinity, but coastal cities along the entire rim of an ocean basin. Kilauea volcano on the island of Hawaii, USA, is a potential source of such flank failures and has therefore been monitored by a network of continuously recording geodetic instruments, including global positioning system (GPS) receivers, tilt meters and strain meters. Here we report that, in early November 2000, this network recorded transient southeastward displacements, which we interpret as an episode of aseismic fault slip. The duration of the event was about 36 hours, it had an equivalent moment magnitude of 5.7 and a maximum slip velocity of about 6[?]cm per day. Inversion of the GPS data reveals a shallow-dipping thrust fault at a depth of 4.5[?]km that we interpret as the down-dip extension of the Hilina Pali--Holei Pali normal fault system. This demonstrates that continuously recording geodetic networks can detect accelerating slip, potentially leading to warnings of volcanic flank collapse.

  5. Hazard potential of volcanic flank collapses raised by new megatsunami evidence

    PubMed Central

    Ramalho, Ricardo S.; Winckler, Gisela; Madeira, José; Helffrich, George R.; Hipólito, Ana; Quartau, Rui; Adena, Katherine; Schaefer, Joerg M.

    2015-01-01

    Large-scale gravitational flank collapses of steep volcanic islands are hypothetically capable of triggering megatsunamis with highly catastrophic effects. Yet, evidence for the generation and impact of collapse-triggered megatsunamis and their high run-ups remains scarce or is highly controversial. Therefore, doubts remain on whether island flank failures truly generate enough volume flux to trigger giant tsunamis, leading to diverging opinions concerning the real hazard potential of such collapses. We show that one of the most prominent oceanic volcanoes on Earth—Fogo, in the Cape Verde Islands—catastrophically collapsed and triggered a megatsunami with devastating effects ~73,000 years ago. Our deductions are based on the recent discovery and cosmogenic 3He dating of tsunamigenic deposits found on nearby Santiago Island, which attest to the impact of this giant tsunami and document wave run-up heights exceeding 270 m. The evidence reported here implies that Fogo’s flank failure involved at least one fast and voluminous event that led to a giant tsunami, in contrast to what has been suggested before. Our observations therefore further demonstrate that flank collapses may indeed catastrophically happen and are capable of triggering tsunamis of enormous height and energy, adding to their hazard potential. PMID:26601287

  6. Window type: paired 2x4 multipaned steel windows flanked by 1x4 ...

    Library of Congress Historic Buildings Survey, Historic Engineering Record, Historic Landscapes Survey

    Window type: paired 2x4 multipaned steel windows flanked by 1x4 multipaned steel casements, breaking building corner. Raised panel door front entry also illustrated. Ground floor detail Building 19, facing north - Harbor Hills Housing Project, 26607 Western Avenue, Lomita, Los Angeles County, CA

  7. Window type: 4x4 multipaned steel window flanked by 1x4 multipaned ...

    Library of Congress Historic Buildings Survey, Historic Engineering Record, Historic Landscapes Survey

    Window type: 4x4 multipaned steel window flanked by 1x4 multipaned steel, casements. Concrete stoop, entry overhang and pipe rail detail also illustrated. Building 36, facing northwest - Harbor Hills Housing Project, 26607 Western Avenue, Lomita, Los Angeles County, CA

  8. Window type: paired 3x2 multipaned steel window flanked by 1x3 ...

    Library of Congress Historic Buildings Survey, Historic Engineering Record, Historic Landscapes Survey

    Window type: paired 3x2 multipaned steel window flanked by 1x3 multipaned steel casements, breaking building corner. Broad overhanging eave also illustrated. Second story detail. Building 13, facing east - Harbor Hills Housing Project, 26607 Western Avenue, Lomita, Los Angeles County, CA

  9. The submarine flanks of Anatahan Volcano, commonwealth of the Northern Mariana Islands

    NASA Astrophysics Data System (ADS)

    Chadwick, William W.; Embley, Robert W.; Johnson, Paul D.; Merle, Susan G.; Ristau, Shannon; Bobbitt, Andra

    2005-08-01

    The submarine flanks of Anatahan volcano were surveyed comprehensively for the first time in 2003 and 2004 with multibeam and sidescan sonar systems. A geologic map based on the new bathymetry and backscatter data shows that 67% of the volcano's submarine flanks are covered with volcaniclastic debris and 26% is lava flows, cones, and bedrock outcrops. The island of Anatahan is only 1% of the volume of the entire volcano, which has a height from its submarine base of 3700 m and an average diameter of ˜35 km. NE Anatahan is a prominent satellite volcano located 10 km NE of the island, but it is only 6% of Anatahan's volume (40 km 3 vs. 620 km 3). Seventy-eight submarine eruptive vents are mapped associated with lava flows and cones between depths of 350 and 2950 m, and 80% of these vents are located in a cluster on the east flank of the volcano. The distribution of cones and lava flows vs. depth suggests a possible change in eruptive style from explosive to effusive between 1500 and 2000 m. Eruptive vents below 2000 m have produced mostly lava flows. There is no evidence of major landslides on the submarine flanks of Anatahan volcano, in contrast to many basaltic islands and seamounts, suggesting that mass wasting at felsic oceanic arc volcanoes may be characterized by sediment flows of unconsolidated volcaniclastic debris instead of mass movements of relatively large intact blocks.

  10. Organic geochemistry of sediments on the flanks of Tanner and Cortes banks offshore from southern California

    USGS Publications Warehouse

    Rapp, J.B.; Kvenvolden, K.A.

    1982-01-01

    Holocene sediment, composed mainly of foram tests, occurs on the flanks of the Tanner and Cortes Banks, offshore southern California. The organic matter in this sediment differs in content and composition from the organic matter in nearby basins. Two sources of hydrocarbons are indicated: terrestrial plants and biodegraded or immature petroleum.

  11. Tsunami deposits at high altitudes on the flanks of volcanic islands

    NASA Astrophysics Data System (ADS)

    Paris, Raphael

    2016-04-01

    It is actually difficult to infer the mechanisms and dynamics of giant mass failures of oceanic shield volcanoes and to evaluate related tsunami hazards. Marine conglomerates and gravels found at unusually high elevations in Hawaii, Cape Verde, Mauritius and Canary Islands are often interpreted as being the result of tsunami waves generated by such massive flank failures. In the first part of this contribution, we document tsunami deposits (marine gravels with pumices) attached to the northwestern slopes of Tenerife, Canary Islands, at altitudes up to 132 m asl. Stratigraphy of the deposits and composition of the pumices allows identifying sources of the successive tsunamis and proposing a new scenario for the Icod flank failure and El Abrigo caldera-forming eruption ca. 170 ka. Then we propose a litterature review of tsunami deposits at high altitudes on the flanks of volcanic islands, and especially oceanic shield volcanoes. These deposits are discussed in terms of texture, structure, composition and particularly the juvenile volcanic material, and implications for better understanding the mechanisms controlling massive flank failures.

  12. Autoradiographic localization of tritiated dihydrotestosterone in the flank organ of the albino hamster

    SciTech Connect

    Lucky, A.W.; Eisenfeld, A.J.; Visintin, I.

    1985-02-01

    In the hamster flank organ, the growth of hair and growth of sebaceous glands are androgen-dependent functions. Although dihydrotestosterone (DHT) is known to be a potent stimulator of flank organ growth, there is no information about localization of DHT receptor sites in this organ. The purpose of this study was to use steroid autoradiography to localize DHT receptors in the hamster flank organ. Because steroid hormones are functional when translocated to nuclear receptors, nuclear localization by autoradiography defines receptor sites. In order to be able to visualize autoradiographic grains from radiolabeled androgens around hair follicles, albino hamsters were studied to avoid confusion between the grains and pigment granules which are abundant in the more common Golden Syrian hamster. Mature male hamsters castrated 24 hours earlier were given tritium-labeled dihydrotestosterone ( (/sup 3/H)DHT). Using the technique of thaw-mount steroid autoradiography, 4-micron unfixed frozen sections were mounted in the dark onto emulsion-coated glass slides and allowed to develop for 4-6 months. (/sup 3/H)DHT was found to be concentrated over sebocyte nuclei. The label was present peripherally as well as in differentiating sebocytes. There was no nuclear localization of (/sup 3/H)DHT in animals pretreated with excessive quantities of unlabeled DHT. Steroid metabolites of (/sup 3/H) DHT were assessed by thin-layer chromatography in paired tissue samples. Most of the label remained with DHT. Uptake was inhibited in the flank organ of hamsters pretreated with unlabeled DHT.

  13. Flanking Magnitudes: Dissociation between Numerosity and Numerical Value in a Selective Attention Task

    ERIC Educational Resources Information Center

    Naparstek, Sharon; Safadi, Ziad; Lichtenstein-Vidne, Limor; Henik, Avishai

    2015-01-01

    The current research examined whether peripherally presented numerical information can affect the speed of number processing. In 2 experiments, participants were presented with a target matrix flanked by a distractor matrix and were asked to perform a comparative judgment (i.e., decide whether the target was larger or smaller than the reference…

  14. Piggyback tectonics: Long-term growth of Kilauea on the south flank of Mauna Loa

    USGS Publications Warehouse

    Lipman, Peter W.; Sisson, Thomas W.; Coombs, Michelle L.; Calvert, Andrew T.; Kimura, Jun-Ichi

    2006-01-01

    Present-day Kilauea is the more dynamic edifice, but prior to inception of Kilauea and during its early growth, Mauna Loa is inferred to have undergone intense volcano spreading, involving the Kaoiki–Honuapo fault system (considered a geometric analog of the Hilina system on Kilauea). Cumulative deformation of Mauna Loa's south flank during growth of Kilauea since 200–300 ka is estimated to have involved > 10 km of seaward spreading, displacing the rift zones of Kīlauea while its deep plumbing system and summit magma reservoir remained nearly fixed in space. Kilauea's rift zones, rather than migrating southward with time solely due to dike emplacement preferentially on the mobile seaward side, alternatively are interpreted to have been transported passively southward, “piggyback” style, during shield-stage growth of Kilauea as a blister on the still-mobile south flank of Mauna Loa. Such an evolution of Kilauea accounts for the arcuate geometry of the present-day rift zones, proximity of the summit magma supply to the exposed flank of Mauna Loa, initial submarine growth of the ancestral edifice, and present-day location of Mauna Loa rocks at shallow depth beneath the south flank of Kilauea.

  15. Cloning flanking sequence by single-primer PCR in transgenic plants.

    PubMed

    Ma, J; Wang, Y P; Ren, S; Zhang, Z; Lu, S; Wang, P W

    2014-10-20

    The insertion position of exogenous genes in plant genomes is usually identified by adapter ligation-mediated polymerase chain reaction (PCR), thermal asymmetric interlaced PCR, and restriction site extension PCR in transgenic plant research. However, these methods have various limitations, such as the complexity of designing primers and time-consuming and multiple-step procedures. The goal of this study was to establish an easier, more rapid, and more accurate method to clone flanking sequence using single-primer PCR in transgenic plants. Unknown flanking genome sequences in transgenic plants, including those in tobacco, soybean, rice, and maize, were cloned using the single-primer PCR method established in this study, with the Bar gene as the anchor gene. The primer 1 (P1), P2, and P3 PCRs obtained 4 sequences, and the completely correct flanking sequence of 508 bp that was obtained in the P3 PCR was verified by sequencing analysis. The single-primer PCR is more rapid and accurate than conventional methods, justifying its application widely in cloning flanking sequences in transgenic plants.

  16. Analogue modelling of flank dynamics at Mount Etna, Italy: first results

    NASA Astrophysics Data System (ADS)

    Norini, G.; Acocella, V.; Neri, M.

    2009-04-01

    Mount Etna shows one of the most relevant case of active flank dynamics along its East and South-East sectors, with some well-known tectonic structures, such as the Pernicana fault, and evident morphologies, such as the Valle del Bove depression. Factors governing this flank dynamics are still matter of debate. Among these, the most important recognized by previous Authors are the topography, intrusion of a plutonic complex in the basement, rising of magma in the volcanic edifice, regional tectonics, low cohesion layers in the volcano basement, and pore pressure. In this study, a first set of analogue models of the complex flank dynamics of Mount Etna was conducted, and the experiments were analyzed for deformation characteristics. Several experiments were run to account for the role of each factor or combination of factors on the flank dynamics of the volcano. The modeling apparatus consisted of a sand cone on a sand base simulating the volcanic edifice and its basement. Sand used for the experiments was a mixture of high cohesion crushed silica sand and low cohesion glass microspheres. Alternated layers with different cohesion were used to account for the crustal structure of the basement. Geometry of the experiments was designated to simulate the topographic gradient at the eastern base of the volcano. Injections of high viscosity silly putty and low viscosity vegetable oil were used to model respectively the growth of an intrusive complex below the volcano and the rising of magma inside the deformed volcanic edifice. Some experiments were conducted on a sheared basal layer to reproduce the effect of the regional tectonics on the volcano flank dynamics. Finally, injection of compressed air in the model allows to simulate the pore pressure and its capability to reduce shear strength of the analogue granular materials. We used a high resolution laser scanner to trace surface deformation as function of the physical conditions of the models. The three

  17. Role of olivine cumulates in destabilizing the flanks of Hawaiian volcanoes

    USGS Publications Warehouse

    Clague, D.A.; Denlinger, R.P.

    1994-01-01

    The south flank of Kilauea Volcano is unstable and has the structure of a huge landslide; it is one of at least 17 enormous catastrophic landslides shed from the Hawaiian Islands. Mechanisms previously proposed for movement of the south flank invoke slip of the volcanic pile over seafloor sediments. Slip on a low friction de??collement alone cannot explain why the thickest and widest sector of the flank moves more rapidly than the rest, or why this section contains a 300 km3 aseismic volume above the seismically defined de??collement. It is proposed that this aseismic volume, adjacent to the caldera in the direction of flank slip, consists of olivine cumulates that creep outward, pushing the south flank seawards. Average primary Kilauea tholeiitic magma contains about 16.5 wt.% MgO compared with an average 10 wt.% MgO for erupted subaerial and submarine basalts. This difference requires fractionation of 17 wt.% (14 vol.%) olivine phenocrysts that accumulate near the base of the magma reservoir where they form cumulates. Submarine-erupted Kilauea lavas contain abundant deformed olivine xenocrysts derived from these cumulates. Deformed dunite formed during the tholeiitic shield stage is also erupted as xenoliths in subsequent alkalic lavas. The deformation structures in olivine xenocrysts suggest that the cumulus olivine was densely packed, probably with as little as 5-10 vol.% intercumulus liquid, before entrainment of the xenocrysts. The olivine cumulates were at magmatic temperatures (>1100??C) when the xenocrysts were entrained. Olivine at 1100??C has a rheology similar to ice, and the olivine cumulates should flow down and away from the summit of the volcano. Flow of the olivine cumulates places constant pressure on the unbuttressed seaward flank, leading to an extensional region that localizes deep intrusions behind the flank; these intrusions add to the seaward push. This mechanism ties the source of gravitational instability to the caldera complex and deep

  18. Concurrent Collections (CnC): A new approach to parallel programming

    ScienceCinema

    None

    2016-07-12

    A common approach in designing parallel languages is to provide some high level handles to manipulate the use of the parallel platform. This exposes some aspects of the target platform, for example, shared vs. distributed memory. It may expose some but not all types of parallelism, for example, data parallelism but not task parallelism. This approach must find a balance between the desire to provide a simple view for the domain expert and provide sufficient power for tuning. This is hard for any given architecture and harder if the language is to apply to a range of architectures. Either simplicity or power is lost. Instead of viewing the language design problem as one of providing the programmer with high level handles, we view the problem as one of designing an interface. On one side of this interface is the programmer (domain expert) who knows the application but needs no knowledge of any aspects of the platform. On the other side of the interface is the performance expert (programmer or program) who demands maximal flexibility for optimizing the mapping to a wide range of target platforms (parallel / serial, shared / distributed, homogeneous / heterogeneous, etc.) but needs no knowledge of the domain. Concurrent Collections (CnC) is based on this separation of concerns. The talk will present CnC and its benefits. About the speaker Kathleen Knobe has focused throughout her career on parallelism especially compiler technology, runtime system design and language design. She worked at Compass (aka Massachusetts Computer Associates) from 1980 to 1991 designing compilers for a wide range of parallel platforms for Thinking Machines, MasPar, Alliant, Numerix, and several government projects. In 1991 she decided to finish her education. After graduating from MIT in 1997, she joined Digital Equipment’s Cambridge Research Lab (CRL). She stayed through the DEC/Compaq/HP mergers and when CRL was acquired and absorbed by Intel. She currently works in the Software and

  19. Submarine geology of Hana Ridge and Haleakala Volcano's northeast flank, Maui

    USGS Publications Warehouse

    Eakins, Barry W.; Robinson, Joel E.

    2006-01-01

    We present a morphostructural analysis of the submarine portions of Haleakala Volcano and environs, based upon a 4-year program of geophysical surveys and submersible explorations of the underwater flanks of Hawaiian volcanoes that was conducted by numerous academic and governmental research organizations in Japan and the U.S. and funded primarily by the Japan Agency for Marine–Earth Science and Technology. A resulting reconnaissance geologic map features the 135-km-long Hana Ridge, the 3000 km2 Hana slump on the volcano's northeast flank, and island-surrounding terraces that are the submerged parts of volcanic shields. Hana Ridge below 2000 m water depth exhibits the lobate morphology typical of the subaqueously erupted parts of Hawaiian rift zones, with some important distinctions: namely, subparallel crestlines, which we propose result from the down-rift migration of offsets in the dike intrusion zone, and an amphitheater at its distal toe, where a submarine landslide has embayed the ridge tip. Deformation of Haleakala's northeast flank is limited to that part identified as the Hana slump, which lies downslope from the volcano's submerged shield, indicating that flank mobility is also limited in plan, inconsistent with hypothesized volcanic spreading driven by rift-zone dilation. The leading edge of the slump has transverse basins and ridges that resemble the thrust ramps of accretionary prisms, and we present a model to describe the slump's development that emphasizes the role of coastally generated fragmental basalt on gravitational instability of Haleakala's northeast flank and that may be broadly applicable to other ocean-island slumps.

  20. Radiometric Dating of Large Volume Flank Collapses in The Lesser Antilles Arc.

    NASA Astrophysics Data System (ADS)

    Quidelleur, X.; Samper, A.; Boudon, G.; Le Friant, A.; Komorowski, J.

    2004-12-01

    It is now admitted that flank collapses, probably triggered by magmatic inflation and/or gravitational collapses, is a recurrent process of the evolution of the Lesser Antilles Arc volcanoes. Large magnitude debris avalanche deposits have been identified offshore, in the Grenada basin (Deplus et al., 2001; Le Friant et al., 2001). The widest extensions have been observed off the coast of Dominica and St Lucia, with associated volumes up to 20 km3. Another large-scale event, with marine evidences probably covered by sediments and latter flank collapses, has been inferred onland from morphological evidences and characteristic deposits of the Carbets structure in Martinique. We present radiometric dating of these three major events using the K-Ar Cassignol-Gillot technique performed on selected groundmass. Both volcanic formations preceding flank collapses (remnants of the horseshoe shaped structures or basal lava flows) and following landslides (lava domes) have been dated. In the Qualibou depression of St. Lucia, the former structure has been dated at 1096+-16 ka and the collapse constrained by dome emplacement prior to 97+-2 ka (Petit Piton). In Dominica, several structures have been associated with repetitive flank collapse events inferred from marine data (Le Friant et al., 2002). The Plat-Pays event probably occurred after 96+-2 ka. Inside the inherited depression, Scotts Head, which is interpreted as a proximal pluri-kilometric megabloc from the Soufriere avalanche, has been dated at 14+-1 ka, providing an older bound for this event. In Martinique Island, three different domes within the Carbets structure have been dated at 335+-5 ka. Assuming a rapid magma emplacement following pressure release due to deloading, this constrains the age of this high magnitude event. Finally, these results obtained from three of the most voluminous flank collapses provide constraints to estimate the recurrence of these events, which represent one of the major hazards associated

  1. Optimization of the Machining parameter of LM6 Alminium alloy in CNC Turning using Taguchi method

    NASA Astrophysics Data System (ADS)

    Arunkumar, S.; Muthuraman, V.; Baskaralal, V. P. M.

    2017-03-01

    Due to widespread use of highly automated machine tools in the industry, manufacturing requires reliable models and methods for the prediction of output performance of machining process. In machining of parts, surface quality is one of the most specified customer requirements. In order for manufactures to maximize their gains from utilizing CNC turning, accurate predictive models for surface roughness must be constructed. The prediction of optimum machining conditions for good surface finish plays an important role in process planning. This work deals with the study and development of a surface roughness prediction model for machining LM6 aluminum alloy. Two important tools used in parameter design are Taguchi orthogonal arrays and signal to noise ratio (S/N). Speed, feed, depth of cut and coolant are taken as process parameter at three levels. Taguchi’s parameters design is employed here to perform the experiments based on the various level of the chosen parameter. The statistical analysis results in optimum parameter combination of speed, feed, depth of cut and coolant as the best for obtaining good roughness for the cylindrical components. The result obtained through Taguchi is confirmed with real time experimental work.

  2. Design and manufacturing of cranioplasty implants by 3-axis cnc milling.

    PubMed

    Hieu, L C; Bohez, E; Vander Sloten, J; Oris, P; Phien, H N; Vatcharaporn, E; Binh, P H

    2002-01-01

    Although various techniques and materials have been used for making cranioplasty implants, personalized cranioplasty implants are high in cost because of expensive materials and production technology, long design and manufacturing time, and intensive labor use. This research was a part of our research project in ASEAN countries to investigate feasible technical solutions of minimizing the implant cost based on available production technologies in the region. The use of 3-axis CNC (Computer Numerical Control) milling techniques for making molds to fabricate PMMA implants was successfully investigated. With the development of a design support program bridging between Computer Aided Design (CAD) and Medical Image Processing (MIP) system, the time for geometrical modeling of implants and molds was reduced to half a day. The machining time to complete a mold was about 5 to 6 hours; and it took maximal 2 hours to fabricate an implant with self-curing PMMA and 3 and half hours for fabricating an implant with heat-curing PMMA. The cost of implants is acceptable for the ASEAN region.

  3. Artificial immune algorithm implementation for optimized multi-axis sculptured surface CNC machining

    NASA Astrophysics Data System (ADS)

    Fountas, N. A.; Kechagias, J. D.; Vaxevanidis, N. M.

    2016-11-01

    This paper presents the results obtained by the implementation of an artificial immune algorithm to optimize standard multi-axis tool-paths applied to machine free-form surfaces. The investigation for its applicability was based on a full factorial experimental design addressing the two additional axes for tool inclination as independent variables whilst a multi-objective response was formulated by taking into consideration surface deviation and tool path time; objectives assessed directly from computer-aided manufacturing environment A standard sculptured part was developed by scratch considering its benchmark specifications and a cutting-edge surface machining tool-path was applied to study the effects of the pattern formulated when dynamically inclining a toroidal end-mill and guiding it towards the feed direction under fixed lead and tilt inclination angles. The results obtained form the series of the experiments were used for the fitness function creation the algorithm was about to sequentially evaluate. It was found that the artificial immune algorithm employed has the ability of attaining optimal values for inclination angles facilitating thus the complexity of such manufacturing process and ensuring full potentials in multi-axis machining modelling operations for producing enhanced CNC manufacturing programs. Results suggested that the proposed algorithm implementation may reduce the mean experimental objective value to 51.5%

  4. An improved method for risk evaluation in failure modes and effects analysis of CNC lathe

    NASA Astrophysics Data System (ADS)

    Rachieru, N.; Belu, N.; Anghel, D. C.

    2015-11-01

    Failure mode and effects analysis (FMEA) is one of the most popular reliability analysis tools for identifying, assessing and eliminating potential failure modes in a wide range of industries. In general, failure modes in FMEA are evaluated and ranked through the risk priority number (RPN), which is obtained by the multiplication of crisp values of the risk factors, such as the occurrence (O), severity (S), and detection (D) of each failure mode. However, the crisp RPN method has been criticized to have several deficiencies. In this paper, linguistic variables, expressed in Gaussian, trapezoidal or triangular fuzzy numbers, are used to assess the ratings and weights for the risk factors S, O and D. A new risk assessment system based on the fuzzy set theory and fuzzy rule base theory is to be applied to assess and rank risks associated to failure modes that could appear in the functioning of Turn 55 Lathe CNC. Two case studies have been shown to demonstrate the methodology thus developed. It is illustrated a parallel between the results obtained by the traditional method and fuzzy logic for determining the RPNs. The results show that the proposed approach can reduce duplicated RPN numbers and get a more accurate, reasonable risk assessment. As a result, the stability of product and process can be assured.

  5. Cost minimizing of cutting process for CNC thermal and water-jet machines

    NASA Astrophysics Data System (ADS)

    Tavaeva, Anastasia; Kurennov, Dmitry

    2015-11-01

    This paper deals with optimization problem of cutting process for CNC thermal and water-jet machines. The accuracy of objective function parameters calculation for optimization problem is investigated. This paper shows that working tool path speed is not constant value. One depends on some parameters that are described in this paper. The relations of working tool path speed depending on the numbers of NC programs frames, length of straight cut, configuration part are presented. Based on received results the correction coefficients for working tool speed are defined. Additionally the optimization problem may be solved by using mathematical model. Model takes into account the additional restrictions of thermal cutting (choice of piercing and output tool point, precedence condition, thermal deformations). At the second part of paper the non-standard cutting techniques are considered. Ones may lead to minimizing of cutting cost and time compared with standard cutting techniques. This paper considers the effectiveness of non-standard cutting techniques application. At the end of the paper the future research works are indicated.

  6. A low glitch 12-bit current-steering CMOS DAC for CNC systems

    NASA Astrophysics Data System (ADS)

    Jianming, Lei; Hanshu, Gui; Beiwen, Hu

    2013-02-01

    A 12-bit, 100-MHz CMOS current-steering D/A converter for CNC (computer number control) systems is presented. To reduce the glitch and increase the SFDR (spurious-free dynamic range), a low crosspoint switch driver and a special dummy switch are applied. In addition, a 4-5-3 segmental structure is used to optimize the performance and layout area. After improvement, the biggest glitch energy decreased from 6.7 pVs to 1.7 pVs, the INL decreased from 2 LSB to 0.8 LSB, the SFDR is 78 dB at a 100-MSPS clock rate and 1 MHz output frequency. This DAC can deliver up to 20.8 mA full-scale current into a 50 Ω load. The power when operating at full-scale current is 163 mW. The layout area is 1.8 × 1.8 mm2 in a standard 0.35-μm CMOS technology.

  7. Ruthenium(II) Complexes Containing Lutidine-Derived Pincer CNC Ligands: Synthesis, Structure, and Catalytic Hydrogenation of C-N bonds.

    PubMed

    Hernández-Juárez, Martín; López-Serrano, Joaquín; Lara, Patricia; Morales-Cerón, Judith P; Vaquero, Mónica; Álvarez, Eleuterio; Salazar, Verónica; Suárez, Andrés

    2015-05-11

    A series of Ru complexes containing lutidine-derived pincer CNC ligands have been prepared by transmetalation with the corresponding silver-carbene derivatives. Characterization of these derivatives shows both mer and fac coordination of the CNC ligands depending on the wingtips of the N-heterocyclic carbene fragments. In the presence of tBuOK, the Ru-CNC complexes are active in the hydrogenation of a series of imines. In addition, these complexes catalyze the reversible hydrogenation of phenantridine. Detailed NMR spectroscopic studies have shown the capability of the CNC ligand to be deprotonated and get involved in ligand-assisted activation of dihydrogen. More interestingly, upon deprotonation, the Ru-CNC complex 5 e(BF4 ) is able to add aldimines to the metal-ligand framework to yield an amido complex. Finally, investigation of the mechanism of the hydrogenation of imines has been carried out by means of DFT calculations. The calculated mechanism involves outer-sphere stepwise hydrogen transfer to the C-N bond assisted either by the pincer ligand or a second coordinated H2 molecule.

  8. Three-dimensional displacements of a large volcano flank movement during the May 2010 eruptions at Pacaya Volcano, Guatemala

    NASA Astrophysics Data System (ADS)

    Schaefer, L. N.; Wang, T.; Escobar-Wolf, R.; Oommen, T.; Lu, Z.; Kim, J.; Lundgren, P. R.; Waite, G. P.

    2017-01-01

    Although massive flank failure is fairly common in the evolution of volcanoes, measurements of flank movement indicative of instability are rare. Here 3-D displacements from airborne radar amplitude images derived using an amplitude image pixel offset tracking technique show that the west and southwest flanks of Pacaya Volcano in Guatemala experienced large ( 4 m), discrete landsliding that was ultimately aborted. Pixel offset tracking improved measurement recovery by nearly 50% over classic interferometric synthetic aperture radar techniques, providing unique measurements at the event. The 3-D displacement field shows that the flank moved coherently downslope along a complex failure surface involving both rotational and along-slope movement. Notably, the lack of continuous movement of the slide in the years leading up to the event emphasizes that active movement should not always be expected at volcanoes for which triggering factors (e.g., magmatic intrusions and eruptions) could precipitate sudden major flank instability.

  9. Genomic organization and 5{prime}-flanking DNA sequence of the murine stomatin gene (Epb72)

    SciTech Connect

    Gallagher, P.G.; Turetsky, T.; Mentzer, W.C. |

    1996-06-15

    Stomatin is a poorly understood integral membrane protein that is absent from the erythrocyte membranes of many patients with hereditary stomatocytosis. This report describes the cloning of the murine stomatin chromosomal gene, determination of its genomic structure, and characterization of the 5{prime}-flanking genomic DNA sequences. The stomatin gene is encoded by seven exons spread over {approximately}25 kb of genomic DNA. There is no concordance between the exon structure of the stomatin gene and the locations of three domains predicted on the basis of protein structure. Inspection of the 5{prime}-flanking DNA sequences reveals features of a TATA-less housekeeping gene promoter and consensus sequences for a number of potential DNA-binding proteins. 12 refs., 2 figs., 1 tab.

  10. The Silent Earthquakes of Kilauea's South Flank and their Ramifications for Catastrophic Failure

    NASA Astrophysics Data System (ADS)

    Cervelli, P. F.

    2004-12-01

    The south flank of Kilauea Volcano is one of the most actively deforming regions on the planet. GPS measurements taken there since the early 1990s show a persistent seaward migration at rates exceeding 5 cm/yr. Large earthquakes occur on Kilauea with alarming frequency. The largest in historical times, a M7.2 event in 1975, caused more than 6 m of seaward displacement in addition to 3.5 m of coastal subsidence. In the last few years, an intermediate form of south flank deformation has been observed. With slip rates of about 10 cm/day, these so-called ``silent earthquake'' are much slower than the nearly instantaneous brittle failure of normal earthquakes, but vastly faster than the creep that carries the south flank relentlessly toward the sea. Kilauea is the latest subaerial volcano in an archipelago of volcanic islands stretching back to the Kamchatka Peninsula. In just the youngest part of this chain, the modern Hawaiian islands, there are more than 70 submarine debris fields, each thought to represent an ancestral flank collapse. If these collapses occurred catastrophically, they almost certainly created tsunami large enough to inundate nearby islands and perhaps long-lived enough to threaten the entire Pacific basin. Evidence for prehistoric inundation on the Hawaiian island consists of anomalously elevated detrital coral deposits, found at several locales and interpreted as the diaspora of passing tsunami. As the youngest and most active of the subaerial Hawaiian volcanoes, it is natural to wonder if Kilauea--in particular the south flank--is the most likely place for future catastrophic collapses. Since the creation of the continuous GPS network on Kilauea in the mid-1990s, as many as four silent earthquakes have been detected. Two of these, occurring in November 2000 and July 2003, have resulted in elastic deformation fields large enough to model. The modeling shows that these events occurred on a shallow ( ˜ 5 km depth) landward dipping fault, possibly

  11. Evidence for microbial carbon and sulfur cycling in deeply buried ridge flank basalt.

    PubMed

    Lever, Mark A; Rouxel, Olivier; Alt, Jeffrey C; Shimizu, Nobumichi; Ono, Shuhei; Coggon, Rosalind M; Shanks, Wayne C; Lapham, Laura; Elvert, Marcus; Prieto-Mollar, Xavier; Hinrichs, Kai-Uwe; Inagaki, Fumio; Teske, Andreas

    2013-03-15

    Sediment-covered basalt on the flanks of mid-ocean ridges constitutes most of Earth's oceanic crust, but the composition and metabolic function of its microbial ecosystem are largely unknown. By drilling into 3.5-million-year-old subseafloor basalt, we demonstrated the presence of methane- and sulfur-cycling microbes on the eastern flank of the Juan de Fuca Ridge. Depth horizons with functional genes indicative of methane-cycling and sulfate-reducing microorganisms are enriched in solid-phase sulfur and total organic carbon, host δ(13)C- and δ(34)S-isotopic values with a biological imprint, and show clear signs of microbial activity when incubated in the laboratory. Downcore changes in carbon and sulfur cycling show discrete geochemical intervals with chemoautotrophic δ(13)C signatures locally attenuated by heterotrophic metabolism.

  12. Oceanic phosphorus imbalance: Magnitude of the mid-ocean ridge flank hydrothermal sink

    NASA Astrophysics Data System (ADS)

    Wheat, C. Geoffrey; McManus, James; Mottl, Michael J.; Giambalvo, Emily

    2003-09-01

    We present a new estimate for the crustal phosphorous sink that results from reactions among seawater, basalt, and sediment blanketing low temperature mid-ocean ridge flank hydrothermal systems. New estimates for global hydrothermal power output, sediment thickness, and the dissolved phosphate concentrations in basement formation fluids indicate that fluid flow through ridge flanks removes 2.8 × 1010 mol P yr-1. This value is larger (130%) than the riverine dissolved flux of inorganic phosphate and is as much as 35% of the sedimentary P sink. The concordant seawater flux (2.1 × 1016 kg yr-1) is 65% of the riverine fluid flux and circulates a fluid volume equivalent to the entire ocean in about 70,000 yr. Additional sampling of seafloor springs is required to further constrain the range of calculated phosphate fluxes; nevertheless the modern phosphorus budget is clearly unbalanced with total sinks outpacing sources.

  13. Stability analysis of Western flank of Cumbre Vieja volcano (La Palma) using numerical modelling

    NASA Astrophysics Data System (ADS)

    Bru, Guadalupe; Gonzalez, Pablo J.; Fernandez-Merodo, Jose A.; Fernandez, Jose

    2016-04-01

    La Palma volcanic island is one of the youngest of the Canary archipelago, being a composite volcano formed by three overlapping volcanic centers. There are clear onshore and offshore evidences of past giant landslides that have occurred during its evolution. Currently, the active Cumbre Vieja volcano is in an early development state (Carracedo et al., 2001). The study of flank instability processes aim to assess, among other hazards, catastrophic collapse and potential tsunami generation. Early studies of the potential instability of Cumbre Vieja volcano western flank have focused on the use of sparse geodetic networks (Moss et al. 1999), surface geological mapping techniques (Day et al. 1999) and offshore bathymetry (Urgeles et al. 1999). Recently, a dense GNSS network and satellite radar interferometry results indicate ground motion consistent with deep-seated creeping processes (Prieto et al. 2009, Gonzalez et al. 2010). In this work, we present a geomechanical advanced numerical model that captures the ongoing deformation processes at Cumbre Vieja. We choose the Finite Elements Method (FEM) which is based in continuum mechanics and is the most used for geotechnical applications. FEM has the ability of using arbitrary geometry, heterogeneities, irregular boundaries and different constitutive models representative of the geotechnical units involved. Our main contribution is the introduction of an inverse approach to constrain the geomechanical parameters using satellite radar interferometry displacements. This is the first application of such approach on a large volcano flank study. We suggest that the use of surface displacements and inverse methods to rigorously constrain the geomechanical model parameter space is a powerful tool to understand volcano flank instability. A particular important result of the studied case is the estimation of displaced rock volume, which is a parameter of critical importance for simulations of Cumbre Vieja tsunamigenic hazard

  14. Germ Cell-Specific Excision of loxP-Flanked Transgenes in Rainbow Trout Oncorhynchus mykiss.

    PubMed

    Katayama, Naoto; Kume, Sachi; Hattori-Ihara, Shoko; Sadaie, Sakiko; Hayashi, Makoto; Yoshizaki, Goro

    2016-04-01

    Cre/loxP-mediated DNA excision in germ cell lineages could contribute substantially to the study of germ cell biology in salmonids, which are emerging as a model species in this field. However, a cell type-specific Cre/loxPsystem has not been successfully developed for any salmonid species. Therefore, we examined the feasibility of Cre/loxP-mediated, germ cell-specific gene excision and transgene activation in rainbow trout. Double-transgenic (wTg) progeny were obtained by mating a transgenic male carryingcrewith a transgenic female carrying thehsc-LRLGgene;crewas driven by rainbow troutvasaregulatory regions and thehsc-LRLGgene was made up of the rainbow troutheat-shock-cognate71promoter, theDsRedgene flanked by twoloxPsites, and theEgfpgene. PCR analysis, fluorescence imaging, and histological analysis revealed that excision of theloxP-flanked sequence and activation ofEgfpoccurred only in germ cells of wTg fish. However, progeny tests revealed that the excision efficiency ofloxP-flanked sequence in germ cells was low (≤3.27%). In contrast, the other wTg fish derived from two differentcre-transgenic males frequently excised theloxP-flanked sequence in germ cells (≤89.25%). Thus, we showed for the first time successful germ cell-specific transgene manipulation via the Cre/loxPsystem in rainbow trout. We anticipate that this technology will be suitable for studies of cell function through cell targeting, cell-linage tracing, and generating cell type-specific conditional gene knockouts and separately for developing sterile rainbow trout in aquaculture.

  15. Hand-assisted laparoscopic nephrectomy for xanthogranulomatous pyelonephritis with nephrocutaneous fistula after failed flank exploration.

    PubMed

    Kijvikai, Kittinut; Dissaranan, Charuspong; Chalermsanyakorn, Panas; Matchariyakul, Chaiyasit; Kochakarn, Wachira

    2006-08-01

    Xanthogranulomatous pyelonephritis presenting with nephrocutaneous fistula is a rare condition, and its treatment of choice is nephrectomy. Laparoscopic management has been proved to be challenging in these inflammatory renal conditions. However, there was no previous report in the literature regarding laparoscopic treatment of nephrocutaneous fistula especially after previous operation. In this communication, we report the first case of hand-assisted laparoscopic nephrectomy for xanthogranulomatous pyelonephritis with nephrocutaneous fistula after previous failed flank exploration.

  16. Evidence for a Mega-Tsunami Generated by Giant Flank Collapse of Fogo Volcano, Cape Verde

    NASA Astrophysics Data System (ADS)

    Ramalho, R. S.; Madeira, J.; Helffrich, G. R.; Schaefer, J. M.; Winckler, G.; Quartau, R.; Adena, K.

    2013-12-01

    Mega-tsunamis generated by ocean island flank collapses are expected to be some of the most hazardous forces of nature, yet evidence for their near-source effects and inferred high run-ups so far is scarce or hotly debated. A newly discovered deposit on the northern coast of Santiago Island (Cape Verde), however, documents the magnitude and run-up height associated with this kind of event. Additionally to chaotic conglomerates distributed from sea-level up to 100 m elevation standing on slopes as steep as 20°, the deposit comprises a number of scattered megaclasts of submarine lava flows, limestone and tuff. The megaclasts are presently located over a higher substructural slope built on younger subaerial lava flows and at elevations ranging 160-220 m a.s.l. All megaclasts correspond to lithologies that crop out exclusively in nearby cliff faces. The origin of this deposit is consequently attributed to an exceptional wave that plucked blocks from the cliff face, transported them inland and deposited them over the higher slopes of the volcanic edifice. The distribution of the megaclasts, together with the local geomorphology, is in agreement with a tsunami that approached the island edifice from the west and was refracted along its northern flank, flooding a series of northwest-oriented valleys. This suggests that the well-known flank collapse of Fogo volcano, located 55 km west of Santiago, is the most likely source, a hypothesis being tested with surface exposure dating. The inferred run-up exceeded 200 m and is consistent with numerical simulations by Paris et al. 2011, implying that the present Fogo island morphology probably developed by at least one giant flank collapse with devastating near-source effects.

  17. Evidence of sheared sills related to flank destabilization in a basaltic volcano

    NASA Astrophysics Data System (ADS)

    Berthod, C.; Famin, V.; Bascou, J.; Michon, L.; Ildefonse, B.; Monié, P.

    2016-04-01

    Piton des Neiges basaltic volcano (La Réunion) has been deeply dissected by erosion, exposing large volumes of debris avalanche deposits. To shed light on the factors that led to volcano flank destabilizations, we studied the structure, the crystallographic and magnetic fabrics of the substratum of a debris avalanche unit. This substratum is a complex of > 50 seaward-dipping sills that has been exposed by the avalanche. Structural observations show that the sill plane in contact with the avalanche is one of the latest intrusions in the sill complex. In this uppermost sill, the anisotropy of magnetic susceptibility (AMS) is correlated to the crystallographic preferred orientation of magmatic silicate minerals, allowing us to use AMS as a proxy to infer the magmatic flow. The AMS fabric across the intrusion is strongly asymmetric, which reveals that the contact sill was emplaced with a normal shear displacement of its hanging wall. The shear displacement and the magma flow in the intrusion are both directed toward the NNE, i.e. toward the sea, which is also the direction of the slope and of the debris avalanche runout. Because all the sills in the intrusion complex have a similar dip and dip direction, it is likely that several of them also underwent a cointrusive slip toward the NNE. We conclude that this cointrusive normal slip, repeated over many intrusions of the sill complex, increased the flank instability of the volcano. This incremental instability may have ended up into the observed debris avalanche deposit. At Piton de la Fournaise, the active volcano of La Réunion, sill intrusion and cointrusive flank displacement have been inferred from geophysical studies for the April 2007 eruption. By providing direct evidence of sheared sills, our study substantiates the idea that repeated sill intrusions may eventually trigger flank destabilizations in basaltic volcanoes.

  18. Hazard Potential of Volcanic Flank Collapses Raised by New Megatsunami Evidence

    NASA Astrophysics Data System (ADS)

    Ramalho, R. S.; Winckler, G.; Madeira, J.; Helffrich, G. R.; Hipólito, A.; Quartau, R.; Adena, K.; Schaefer, J. M.

    2015-12-01

    Large-scale gravitational flank collapses of steep volcanic islands are hypothetically capable of triggering megatsunamis with highly catastrophic effects. Yet evidence for the existence and impact of collapsed-triggered megatsunamis and their run-up heights remains scarce and/or is highly contentious. Therefore a considerable debate still exists over the potential magnitude of collapse-triggered tsunamis and their inherent hazard. In particular, doubts still remain whether or not large-scale flank failures typically generate enough volume flux to result in megatsunamis, or alternatively operate by slow-moving or multiple smaller episodic failures with much lower tsunamigenic potential. Here we show that one of the tallest and most active oceanic volcanoes on Earth - Fogo, in the Cape Verde Islands - collapsed catastrophically and triggered a megatsunami with devastating near-field effects ~73,000 years ago. Our deductions are based on the recent discovery and cosmogenic 3He dating of tsunamigenic deposits - comprising fields of stranded megaclasts, chaotic conglomerates, and sand sheets - found on the adjacent Santiago Island, which attest to the impact of this megatsunami and document wave run-up heights exceeding 270 m. The evidence reported here implies that Fogo's flank failure involved at least one sudden and voluminous event that resulted in a megatsunami, in contrast to what has been suggested before. Our work thus provides another line of evidence that large-scale flank failures at steep volcanic islands may indeed happen catastrophically and are capable of triggering tsunamis of enormous height and energy. This new line of evidence therefore reinforces the hazard potential of volcanic island collapses and stands as a warning that such hazard should not be underestimated, particularly in areas where volcanic island edifices are close to other islands or to highly populated continental margins.

  19. Improved predictive test for MEN2, using flanking dinucleotide repeats and RFLPs

    SciTech Connect

    Howe, J.R.; Lairmore, T.C.; Mishra, S.K.; Shenshen Dou; Veile, R.; Wells, S.A. Jr.; Donis-Keller, H. )

    1992-12-01

    Gene(s) for the autosomal dominant endocrine cancer syndromes, multiple endocrine neoplasia type 2A (MEN2A), multiple endocrine neoplasia type 2B (MEN2B), and familial medullary thyroid carcinoma (MTC1) all map to the pericentromeric region of chromosome 10. Predictive testing for the inheritance of mutant alleles in individuals at risk for these disorders has been limited by the availability of highly informative and closely linked flanking markers. The authors describe the development of eight new markers, including two PCR-based dinucleotide repeat polymorphisms and six RFLPs that flank the disease loci. One of the dinucleotide repeat markers (sJRH-1) derives from the RBP3 locus on 10q11.2 and has a PIC of .88. The other dinucleotide repeat (sTCL-1) defines a new locus, D10S176, that maps by in situ hybridization to 10p11.2 and has a PIC of .68. The authors have constructed a new genetic linkage map of the pericentromeric region of chromosome 10, on the basis of 13 polymorphisms at six loci, which places the MEN2A locus between the dinucleotide repeat markers, with odds of 5,750:1 over the next most likely position. Using this set of markers, predictive genetic testing of 130 at-risk individuals from six families segregating MEN2A revealed that 95% were jointly informative with flanking markers, representing a significant improvement in genetic testing capabilities. 42 refs., 6 figs., 3 tabs.

  20. Cloning and characterization of the 5'-flanking region of the Ehox gene

    SciTech Connect

    Lee, Woon Kyu . E-mail: wklee@yumc.yonsei.ac.kr; Kim, Yong-Man; Malik, Nasir; Ma Chang; Westphal, Heiner

    2006-03-03

    The paired-like homeobox-containing gene Ehox plays a role in embryonic stem cell differentiation and is highly expressed in the developing placenta and thymus. To understand the mechanisms of regulation of Ehox gene expression, the 5'-flanking region of the Ehox gene was isolated from a mouse BAC library. 5'-RACE analysis revealed a single transcriptional start site 130 nucleotides upstream of the translation initiation codon. Transient transfection with a luciferase reporter gene under the control of serially deleted 5'-flanking sequences revealed that the nt -84 to -68 region contained a positive cis-acting element for efficient expression of the Ehox gene. Mutational analysis of this region and oligonucleotide competition in the electrophoretic mobility shift assay revealed the presence of a CCAAT box, which is a target for transcription nuclear factor Y (NFY). NFY is essential for positive gene regulation. No tissue-specific enhancer was identified in the 1.9-kb 5'-flanking region of the Ehox gene. Ehox is expressed during the early stages of embryo development, specifically in Brain at 9.5 dpc, as well as during the late stages of embryo development. These results suggest that NFY is an essential regulatory factor for Ehox transcriptional activity, which is important for the post-implantation stage of the developing embryo.

  1. Analysis of the regions flanking the human insulin gene and sequence of an Alu family member.

    PubMed Central

    Bell, G I; Pictet, R; Rutter, W J

    1980-01-01

    The regions around the human insulin gene have been studied by heteroduplex, hybridization and sequence analysis. These studies indicated that there is a region of heterogeneous length located approximately 700 bp before the 5' end of the gene; and that the 19 kb of cloned DNA which includes the 1430 bp insulin gene as well as 5650 bp before and 11,500 bp after the gene is single copy sequence except for 500 bp located 6000 bp from the 3' end of the gene. This 500 bp segment contains a member of the Alu family of dispersed middle repetitive sequences as well as another less highly repeated homopolymeric segment. The sequence of this region was determined. This Alu repeat is bordered by 19 bp direct repeats and also contains an 83 bp sequence which is present twice. The regions flanking the human and rat I insulin genes were compared by heteroduplex analysis to localize homologous sequences in the flanking regions which could be involved in the regulation of insulin biosynthesis. The homology between the two genes is restricted to the region encoding preproinsulin and a short region of approximately 60 bp flanking the 5' side of the genes. Images PMID:6253909

  2. RADIAL VELOCITY PLANETS DE-ALIASED: A NEW, SHORT PERIOD FOR SUPER-EARTH 55 Cnc e

    SciTech Connect

    Dawson, Rebekah I.; Fabrycky, Daniel C. E-mail: daniel.fabrycky@gmail.co

    2010-10-10

    Radial velocity measurements of stellar reflex motion have revealed many extrasolar planets, but gaps in the observations produce aliases, spurious frequencies that are frequently confused with the planets' orbital frequencies. In the case of Gl 581 d, the distinction between an alias and the true frequency was the distinction between a frozen, dead planet and a planet possibly hospitable to life. To improve the characterization of planetary systems, we describe how aliases originate and present a new approach for distinguishing between orbital frequencies and their aliases. Our approach harnesses features in the spectral window function to compare the amplitude and phase of predicted aliases with peaks present in the data. We apply it to confirm prior alias distinctions for the planets GJ 876 d and HD 75898 b. We find that the true periods of Gl 581 d and HD 73526 b/c remain ambiguous. We revise the periods of HD 156668 b and 55 Cnc e, which were afflicted by daily aliases. For HD 156668 b, the correct period is 1.2699 days and the minimum mass is (3.1 {+-} 0.4) M{sub +}. For 55 Cnc e, the correct period is 0.7365 days-the shortest of any known planet-and the minimum mass is (8.3 {+-} 0.3) M{sub +}. This revision produces a significantly improved five-planet Keplerian fit for 55 Cnc, and a self-consistent dynamical fit describes the data just as well. As radial velocity techniques push to ever-smaller planets, often found in systems of multiple planets, distinguishing true periods from aliases will become increasingly important.

  3. Effect of a gelatin-based edible coating containing cellulose nanocrystals (CNC) on the quality and nutrient retention of fresh strawberries during storage

    NASA Astrophysics Data System (ADS)

    Fakhouri, F. M.; Casari, A. C. A.; Mariano, M.; Yamashita, F.; Innocnentini Mei, L. H.; Soldi, V.; Martelli, S. M.

    2014-08-01

    Strawberry is a non-climacteric fruit with a very short postharvest shelf-life. Loss of quality in this fruit is mostly due to its relatively high metabolic activity and sensitivity to fungal decay, meanly grey mold (Botrytis cinerea). In this study, the ability of gelatin coatings containing cellulose nanocrystals (CNC) to extend the shelf-life of strawberry fruit (Fragaria ananassa) over 8 days were studied. The filmogenic solution was obtained by the hydration of 5 g of gelatin (GEL) in 100 mL of distillated water containing different amounts of CNC dispersion (10 mg CNC/g of GEL or 50 mg of CNC/g of GEL) for 1 hour at room temperature. After this period, the solution was heated to 70 °C and maintained at this temperature for 10 minutes. The plasticizer (glycerol) (10g/100g of the GEL) was then added with constant, gentle stirring in order to avoid forming air bubbles and also to avoid gelatin denaturation until complete homogenization. Strawberries (purchased at the local market) were immersed in the filmogenic solution for 1 minute and after coated were dried at 15 °C by 24 hours. The strawberries were then kept under refrigeration and characterized in terms of their properties (weight loss, ascorbic acid content, titratable acidity, water content). The results have shown that samples covered with GEL/CNC had a significant improvement in its shelf- life. For instance, for the control sample (without coating) the weight loss after 8 days of storage was around 65%, while covered samples loss in the range of 31-36%. Edible coating was also effective in the retention of ascorbic acid (AA) in the strawberries, while control sample presented a fast decay in the AA content, covered samples showed a slow decay in the AA concentration. Moreover, the use of GEL/CNC edible coating had an antimicrobial effect in the fruits.

  4. Mechanical response of the south flank of kilauea volcano, hawaii, to intrusive events along the rift systems

    USGS Publications Warehouse

    Dvorak, J.J.; Okamura, A.T.; English, T.T.; Koyanagi, R.Y.; Nakata, J.S.; Sako, M.K.; Tanigawa, W.T.; Yamashita, K.M.

    1986-01-01

    Increased earthquake activity and compression of the south flank of Kilauea volcano, Hawaii, have been recognized by previous investigators to accompany rift intrusions. We further detail the temporal and spatial changes in earthquake rates and ground strain along the south flank induced by six major rift intrusions which occurred between December 1971 and January 1981. The seismic response of the south flank to individual rift intrusions is immediate; the increased rate of earthquake activity lasts from 1 to 4 weeks. Horizontal strain measurements indicate that compression of the south flank usually accompanies rift intrusions and eruptions. Emplacement of an intrusion at a depth greater than about 4 km, such as the June 1982 southwest rift intrusion, however, results in a slight extension of the subaerial portion of the south flank. Horizontal strain measurements along the south flank are used to locate the January 1983 east-rift intrusion, which resulted in eruptive activity. The intrusion is modeled as a vertical rectangular sheet with constant displacement perpendicular to the plane of the sheet. This model suggests that the intrusive body that compressed the south flank in January 1983 extended from the surface to about 2.4 km depth, and was aligned along a strike of N66??E. The intrusion is approximately 11 km in length, extended beyond the January 1983 eruptive fissures, which are 8 km in length and is contained within the 14-km-long region of shallow rift earthquakes. ?? 1986.

  5. About one algorithm of the broken line approximation and a modeling of tool path for CNC plate cutting machines

    NASA Astrophysics Data System (ADS)

    Kurennov, D. V.; Petunin, A. A.; Repnitskii, V. B.; Shipacheva, E. N.

    2016-12-01

    The problem of approximating two-dimensional broken line with composite curve consisting of arc and line segments is considered. The resulting curve nodes have to coincide with source broken line nodes. This problem arises in the development of control programs for CNC (computer numerical control) cutting machines, permitting circular interpolation. An original algorithm is proposed minimizing the number of nodes for resulting composite curve. The algorithm is implemented in the environment of the Russian CAD system T-Flex CAD using its API (Application Program Interface). The algorithm optimality is investigated. The result of test calculation along with its geometrical visualization is given.

  6. Analyses of Etna Eruptive Activity From 18th Century and Characterization of Flank Eruptions

    NASA Astrophysics Data System (ADS)

    del Carlo, P.; Branca, S.; Coltelli, M.

    2003-12-01

    Etna explosive activity has usually been considered subordinate with respect to the effusive eruptions. Nevertheless, in the last decade and overall after the 2001 and 2002 flank eruptions, explosive activity has drawn the attention of the scientific and politic communities owing to the damages that the long-lasting ash fall caused to Sicily's economy. We analyzed the eruptions from the 18th century to find some analogous behavior of Etna in the past. A study of the Etna historical record (Branca and Del Carlo, 2003) evidenced that after the 1727 eruption, there are no more errors in the attribution of the year of the eruption. Furthermore from this time on, the scientific quality of the chronicles allowed us to obtain volcanological information and to estimate the magnitude of the major explosive events. The main goal of this work was to characterize the different typologies of Etna eruptions in the last three centuries. Meanwhile, we have tried to find the possible relationship between the two kinds of activity (explosive and effusive) in order to understand the complexity of the eruptive phenomena and define the short-term behavior of Etna. On the base of the predominance of the eruptive typology (effusive or explosive) we have classified the flank eruptions in three classes: i) Type 1: almost purely effusive; ii) Type 2: the intensity of explosive activity comparable with the effusive; iii) Type 3: almost purely explosive with minor lava effusion (only the 1763 La Montagnola and 2002 eruptions belong to this class). Long-lasting explosive activity is produced by flank eruptions with continuous ash emission and prolonged fallout on the flanks (e.g. 1763, 1811, 1852-53, 1886, 1892, 2001 and 2002 eruptions). At summit craters continuous activity is weaker, whereas the strongest explosive eruptions are short-lived events. Furthermore, from the 18th to 20th century there were several years of intense and discontinuous summit explosive activity, from high strombolian

  7. Transmembrane Helix Association Affinity Can Be Modulated by Flanking and Noninterfacial Residues

    PubMed Central

    Zhang, Jinming; Lazaridis, Themis

    2009-01-01

    The GxxxG sequence motif mediates the association of transmembrane (TM) helices by providing a site of close contact between them. However, it is not sufficient for strong association. For example, both bacteriophage M13 major coat protein (MCP) and human erythrocyte protein glycophorin A (GpA) contain a GxxxG motif in their TM domains and form a homodimer, but the association affinity of MCP, measured by the ToxCAT in vivo assay, is dramatically weaker than that of GpA. Even when all interfacial residues of MCP were substituted for those of GpA (MCP-GpA), association remained significantly weaker than in GpA. Here we provide an explanation for these experimental observations using molecular dynamics simulations in an implicit membrane (IMM1-GC). The association free energies of GpA29 (GpA with 29 residues all from the wild-type sequence), GpA15p11 (GpA with 15 residues from the wild-type sequence plus 11 flanking residues from the ToxCAT construct), MCP, and MCP-GpA TM helices were calculated and compared. MCP and MCP-GpA have the same flanking residues used in the ToxCAT assay as those in GpA15p11, but the position of the flanking residues relative to the GxxxG motif is different. The calculated association free energies follow experimental observations: the association affinity of MCP-GpA falls between those of GpA15p11 and MCP wild-type. MCP exhibits an equally strong interhelical interaction in the TM domain. A major reason for the weaker association of MCP in the calculations was the noninterfacial residue Lys-40, which in the dimer structure is forced to be buried in the membrane interior. To alleviate the desolvation cost, in MCP and MCP-GpA dimers, Lys-40 gets deprotonated. A second factor that modulates association affinity is the flanking residues. Thanks to them, GpA15p11 exhibits a much stronger association affinity than GpA29. The positioning of the flanking residues is also important, as evidenced by the difference in association affinity between

  8. Thermal Error Modeling Method with the Jamming of Temperature-Sensitive Points' Volatility on CNC Machine Tools

    NASA Astrophysics Data System (ADS)

    MIAO, Enming; LIU, Yi; XU, Jianguo; LIU, Hui

    2017-03-01

    Aiming at the deficiency of the robustness of thermal error compensation models of CNC machine tools, the mechanism of improving the models' robustness is studied by regarding the Leaderway-V450 machining center as the object. Through the analysis of actual spindle air cutting experimental data on Leaderway-V450 machine, it is found that the temperature-sensitive points used for modeling is volatility, and this volatility directly leads to large changes on the collinear degree among modeling independent variables. Thus, the forecasting accuracy of multivariate regression model is severely affected, and the forecasting robustness becomes poor too. To overcome this effect, a modeling method of establishing thermal error models by using single temperature variable under the jamming of temperature-sensitive points' volatility is put forward. According to the actual data of thermal error measured in different seasons, it is proved that the single temperature variable model can reduce the loss of forecasting accuracy resulted from the volatility of temperature-sensitive points, especially for the prediction of cross quarter data, the improvement of forecasting accuracy is about 5 μm or more. The purpose that improving the robustness of the thermal error models is realized, which can provide a reference for selecting the modeling independent variable in the application of thermal error compensation of CNC machine tools.

  9. A Modern Take on the RV Classics: N-body Analysis of GJ 876 and 55 Cnc

    NASA Astrophysics Data System (ADS)

    Nelson, Benjamin E.; Ford, E. B.; Wright, J.

    2013-01-01

    Over the past two decades, radial velocity (RV) observations have uncovered a diverse population of exoplanet systems, in particular a subset of multi-planet systems that exhibit strong dynamical interactions. To extract the model parameters (and uncertainties) accurately from these observations, one requires self-consistent n-body integrations and must explore a high-dimensional 7 x number of planets) parameter space, both of which are computationally challenging. Utilizing the power of modern computing resources, we apply our Radial velocity Using N-body Differential Evolution Markov Chain Monte Carlo code (RUN DEMCMC) to two landmark systems from early exoplanet surveys: GJ 876 and 55 Cnc. For GJ 876, we analyze the Keck HIRES (Rivera et al. 2010) and HARPS (Correia et al. 2010) data and constrain the distribution of the Laplace argument. For 55 Cnc, we investigate the orbital architecture based on a cumulative 1086 RV observations from various sources and transit constraints from Winn et al. 2011. In both cases, we also test for long-term orbital stability.

  10. Possible Evidences of Ice Dynamics in the Putative Glaciers at the Lower NW Flank of Hecates Tholus Volcano, Mars

    NASA Astrophysics Data System (ADS)

    Centeno, J. D.; de Pablo, M. A.

    2011-03-01

    Glacial forms, like crevasses and bergschrunds give evidence of recent glacial flow in the northwest flank of Hecates Tholus. We show several working hypothesis on the origin of these forms and its relation with slope gravitational processes and deglaciation.

  11. Modeling "secular" flank motion at Kilauea Volcano (Hawai'i) during 2000-2003

    NASA Astrophysics Data System (ADS)

    Plattner, C.; Amelung, F.; Baker, S.; Govers, R. M.; Poland, M. P.; Lavallee, Y.

    2011-12-01

    Kilauea's south flank is moving seaward due to flank instabilities. The rate is influenced by magmatic events (dike intrusions) and tectonic events (earthquakes and slow-slip events at the decollement), but the general flank motion signal remains significant at any time, with rates of 6-10 cm/yr during the past decade. The surface displacements were explained by fault slip along the decollement beneath Kilauea combined with deep-rift opening in elastic halfspace dislocation models. While these models explain the kinematics well, the dynamics of the rift opening are not resolved, and the question on contribution from magmatic driving forces versus an entirely gravitationally-driven system remains. InSAR time-series analysis (Small Baseline Algorithm; SBAS) showed linear surface subsidence at Kilauea summit (maximum rate 5.5 cm/yr south of the caldera) during 2000-2003, a time-period during which the influence of distinct deformation events is small in comparison to previous and later time-periods. Here, we investigate if summit subsidence can be explained as a consequence of secular flank motion at Kilauea by ductile creep of a deep magma mush, using a numerical model with time-dependent material deformation properties to constrain velocities rather than displacements. We developed a 2D finite element model that investigates the deformation response of Kilauea to gravitational driving forces only. The model geometry includes a decollement fault beneath the volcano that can have locked and creeping fault segments. We introduce time-dependent material behavior using a viscoelastic model media. The host rock remains stable over geodetic timescales given its high viscosity value, while the deep-seated magma mush beneath Kilauea caldera is assigned a lower viscosity and spreads at significant rates. The deformation signal of the magma mush is transmitted to the surface, causing local subsidence at Kilauea summit, showing that summit subsidence can be explained by flank

  12. Role of large flank-collapse events on magma evolution of volcanoes. Insights from the Lesser Antilles Arc

    NASA Astrophysics Data System (ADS)

    Boudon, Georges; Villemant, Benoît; Friant, Anne Le; Paterne, Martine; Cortijo, Elsa

    2013-08-01

    Flank-collapse events are now recognized as common processes of destruction of volcanoes. They may occur several times on a volcanic edifice pulling out varying volumes of material from km3 to thousands of km3. In the Lesser Antilles Arc, a large number of flank-collapse events were identified. Here, we show that some of the largest events are correlated to significant variations in erupted magma compositions and eruptive styles. On Montagne Pelée (Martinique), magma production rate has been sustained during several thousand years following a 32 ka old flank-collapse event. Basic and dense magmas were emitted through open-vent eruptions that generated abundant scoria flows while significantly more acidic magmas were produced before the flank collapse. The rapid building of a new cone increased the load on magma bodies at depth and the density threshold. Magma production rate decreased and composition of the erupted products changed to more acidic compared to the preceding period of activity. These low density magma generated plinian and dome-forming eruptions up to the Present. In contrast at Soufrière Volcanic Centre of St. Lucia and at Pitons du Carbet in Martinique, the flank-collapses have an opposite effect: in both cases, the acidic magmas erupted immediately after the flank-collapses. These magmas are highly porphyritic (up to 60% phenocrysts) and much more viscous than the magmas erupted before the flank-collapses. They have been generally emplaced as voluminous and uptight lava domes (called “the Pitons”). Such magmas could not ascent without a significant decrease of the threshold effect produced by the volcanic edifice loading before the flank-collapse.

  13. Large-scale flank collapse events during the activity of Montagne Pelée, Martinique, Lesser Antilles

    NASA Astrophysics Data System (ADS)

    Le Friant, Anne; Boudon, Georges; Deplus, Christine; Villemant, Benoã®T.

    2003-01-01

    A horseshoe-shaped structure already identified on the southwestern flank of Montagne Pelée (Martinique, Lesser Antilles arc) was previously interpreted as resulting of a flank collapse event, but no debris avalanche deposits were observed at the time. New offshore high-resolution bathymetry and geophysical data (Aguadomar cruise; December 1998 to January 1999; R/V L'Atalante) lead us to identify three debris avalanche deposits on the submarine western flank of Montagne Pelée extending down to the Grenada Basin. They display morphological fronts and hummocky morphology on bathymetric data, speckled pattern on backscatter data and hyperbolic facies on 3.5 kHz and seismic profiles. New on-land geological studies lead us to identify two other horseshoe-shaped structures on the same flank of the volcano. The three submarine deposits have been traced back to the structures identified on land, which confirms the occurrence of repeated flank collapse events during the evolution of Montagne Pelée. The ages of the last two events are estimated at ˜9 ka and ˜25 ka on the basis of 14C and 238U/230Th dates. Every flank collapse produced debris avalanches which flowed down to the Caribbean Sea. We propose that the repeated instabilities are due to the large asymmetry of the island with western aerial and submarine slopes steeper than the eastern slopes. The asymmetry results from progressive loading by accumulation of volcanic products on the western slopes of the volcano and development of long-term gravitational instabilities. Meteoric and hydrothermal fluid circulation on the floor of the second flank collapse structure also creates a weakened hydrothermalized area, which favors the recurrence of flank collapses.

  14. The ridges of Europa: Extensions of adjacent topography onto their flanks

    NASA Astrophysics Data System (ADS)

    Greenberg, Richard; Sak, Peter B.

    2014-03-01

    The surface of Europa displays numerous generations of intersecting arrays of linear ridges. At some locations along these ridges, older ridges on adjacent terrain appear to extend up the flank of a more recent ridge. It has thus been suggested that the ridges may have formed by upturning of that adjacent terrain. However, the newer ridges generally appear to be material deposited over the older terrain. Here we consider how the morphology of the overprinted topography may have been inherited by the more recent ridges. An analogous process occurs along some sediment-starved convergent plate boundaries on Earth, where the poorly consolidated material of a frontal prism of an overriding plate is pushed over preexisting ridges and seamounts on the downgoing plate. The overriding plate inherits the morphology of the downgoing plate even though the actual extension of that topography has been underthrust and buried. A well-studied example lies offshore of Costa Rica where the Caribbean plate overrides the Cocos plate. Experiments show other mechanisms as well: mass-wasting down a flank can result in extensions of adjacent ridges thanks to the geometry imposed by a constant angle of repose; in addition, more pronounced extensions of the older ridges result if the new ridge grows as it is bulldozed from behind (i.e., from the central groove of a double ridge on Europa). The shapes of the ridge extensions are distinctly different in these two cases. If tidal pumping extrudes material to the surface at the center of a double ridge, it might drive the latter mechanism. The ridge extensions observed on the flanks of more recent ridges may provide a crucial diagnostic of dominant ridge-building mechanisms when and if additional images are obtained at high resolution from future exploration. In additional to their morphology, the distribution of ridge extensions at only isolated locales may also provide constraints on ridge formation processes and their diversity.

  15. Generation, migration, and entrapment of Precambrian oils in the Eastern Flank Heavy Oil province, south Oman

    SciTech Connect

    Konert, G.; Van Den Brink, H.A. ); Visser, W. )

    1991-08-01

    The prolific Eastern Flank Heavy Oil province east of the South Oman Salt basin is unique because of the widespread occurrence of Precambrian source rocks from which the hydrocarbons originated. Fission-track analysis and burial studies suggest that most of these source rocks became mature and generated hydrocarbons in the Ordovician; subsequently, the source beds were uplifted and did not re-enter the oil window. Its uniqueness is also based on the all-important role played by Precambrian salt. The traps in Palaeozoic clastics were initially structured by halokinesis, and subsequently by salt dissolution. The latter process gradually removed the salt from the area is largely responsible for the present-day structure with palaeo-withdrawal basins inverted in present-day turtles. Present-day traps are mainly post-Late Jurassic in age, significantly post-dating the time of oil generation. Detailed field studies indicate that charge phases appear to correlate with periods of increased salt dissolution in the Late Jurassic-Early Cretaceous, Late Cretaceous, and Tertiary. Oil was probably stored in intermediate traps below and within the salt. It was gradually released upon progressive tilting of the basin flank; it migrated updip toward the basinward retreating salt edge, and subsequently (back) spilled into the stratigraphically younger traps. Also, removal of the top seal of intra-salt and sub-salt traps by salt dissolution allowed upward remigration. It follows that charge concepts in the Eastern Flank Heavy Oil province depend on defining salt-edge-related hydrocarbon release areas, rather than on kitchen modeling.

  16. Radiometric dating of three large volume flank collapses in the Lesser Antilles Arc

    NASA Astrophysics Data System (ADS)

    Samper, A.; Quidelleur, X.; Boudon, G.; Le Friant, A.; Komorowski, J. C.

    2008-10-01

    It is now recognised that flank collapses are a recurrent process in the evolution of the Lesser Antilles Arc volcanoes. Large magnitude debris-avalanche deposits have been identified off the coast of Dominica, Martinique and St. Lucia, with associated volumes up to 20 km 3 [Deplus, C., Le Friant, A., Boudon, G., Komorowski, J.-C., Villemant, B., Harford, C., Ségoufin, J., Cheminée, J.-L., 2001. Submarine evidence for large-scale debris avalanches in the Lesser Antilles Arc. Earth Planet. Sci. Lett., 192: 145-157.]. We present new radiometric dating of three major events using the K-Ar Cassignol-Gillot technique. In the Qualibou depression of St. Lucia, a collapse has been constrained by dome emplacement prior to 95 ± 2 ka. In Dominica, where repetitive flank collapse events have occurred [Le Friant, A., Boudon, G., Komorowski, J.-C., Deplus, C., 2002. L'île de la Dominique, à l'origine des avalanches de débris les plus volumineuses de l'arc des Petites Antilles. C.R. Geoscience, 334: 235-243], the Plat Pays event probably occurred after 96 ± 2 ka. Inside the depression caused by this event, Scotts Head, which is interpreted as a proximal megabloc from the subsequent Soufriere avalanche event has been dated at 14 ± 1 ka, providing an older bound for this event. On Martinique three different domes within the Carbets structure dated at 337 ± 5 ka constrain the age of this high magnitude event. Finally, these results obtained from three of the most voluminous flank collapses provide constraints to estimate the recurrence of these events, which represent one of the major hazards associated with volcanoes of the Lesser Antilles Arc.

  17. Long-period seismic events with strikingly regular temporal patterns on Katla volcano's south flank (Iceland)

    NASA Astrophysics Data System (ADS)

    Sgattoni, Giulia; Jeddi, Zeinab; Gudmundsson, Ólafur; Einarsson, Páll; Tryggvason, Ari; Lund, Björn; Lucchi, Federico

    2016-09-01

    Katla is a threatening volcano in Iceland, partly covered by the Mýrdalsjökull ice cap. The volcano has a large caldera with several active geothermal areas. A peculiar cluster of long-period seismic events started on Katla's south flank in July 2011, during an unrest episode in the caldera that culminated in a glacier outburst. The seismic events were tightly clustered at shallow depth in the Gvendarfell area, 4 km south of the caldera, under a small glacier stream at the southern margin of Mýrdalsjökull. No seismic events were known to have occurred in this area before. The most striking feature of this seismic cluster is its temporal pattern, characterized by regular intervals between repeating seismic events, modulated by a seasonal variation. Remarkable is also the stability of both the time and waveform features over a long time period, around 3.5 years. We have not found any comparable examples in the literature. Both volcanic and glacial processes can produce similar waveforms and therefore have to be considered as potential seismic sources. Discerning between these two causes is critical for monitoring glacier-clad volcanoes and has been controversial at Katla. For this new seismic cluster on the south flank, we regard volcano-related processes as more likely than glacial ones for the following reasons: 1) the seismic activity started during an unrest episode involving sudden melting of the glacier and a jökulhlaup; 2) the glacier stream is small and stagnant; 3) the seismicity remains regular and stable for years; 4) there is no apparent correlation with short-term weather changes, such as rainstorms. We suggest that a small, shallow hydrothermal system was activated on Katla's south flank in 2011, either by a minor magmatic injection or by changes of permeability in a local crack system.

  18. North Kona slump: Submarine flank failure during the early(?) tholeiitic shield stage of Hualalai Volcano

    USGS Publications Warehouse

    Lipman, P.W.; Coombs, M.L.

    2006-01-01

    The North Kona slump is an elliptical region, about 20 by 60 km (1000-km2 area), of multiple, geometrically intricate benches and scarps, mostly at water depths of 2000–4500 m, on the west flank of Hualalai Volcano. Two dives up steep scarps in the slump area were made in September 2001, using the ROV Kaiko of the Japan Marine Science and Technology Center (JAMSTEC), as part of a collaborative Japan–USA project to improve understanding of the submarine flanks of Hawaiian volcanoes. Both dives, at water depths of 2700–4000 m, encountered pillow lavas draping the scarp-and-bench slopes. Intact to only slightly broken pillow lobes and cylinders that are downward elongate dominate on the steepest mid-sections of scarps, while more equant and spherical pillow shapes are common near the tops and bases of scarps and locally protrude through cover of muddy sediment on bench flats. Notably absent are subaerially erupted Hualalai lava flows, interbedded hyaloclastite pillow breccia, and/or coastal sandy sediment that might have accumulated downslope from an active coastline. The general structure of the North Kona flank is interpreted as an intricate assemblage of downdropped lenticular blocks, bounded by steeply dipping normal faults. The undisturbed pillow-lava drape indicates that slumping occurred during shield-stage tholeiitic volcanism. All analyzed samples of the pillow-lava drape are tholeiite, similar to published analyses from the submarine northwest rift zone of Hualālai. Relatively low sulfur (330–600 ppm) and water (0.18–0.47 wt.%) contents of glass rinds suggest that the eruptive sources were in shallow water, perhaps 500–1000-m depth. In contrast, saturation pressures calculated from carbon dioxide concentrations (100–190 ppm) indicate deeper equilibration, at or near sample sites at water depths of − 3900 to − 2800 m. Either vents close to the sample sites erupted mixtures of undegassed and degassed magmas, or volatiles were resorbed from

  19. Stability analysis of Hawaiian Island flanks using insight gained from strength testing of the HSDP core

    NASA Astrophysics Data System (ADS)

    Thompson, Nick; Watters, Robert J.; Schiffman, Peter

    2008-04-01

    Hawaiian Island flank failures are recognized as the largest landslide events on Earth, reaching volumes of several thousand cubic kilometers and lengths of over 200 km and occurring on an average of once every 100 000 years. The 3.1 km deep Hawaii Scientific Drilling Project (HSDP) enabled an investigation of the rock mass strength variations on the island of Hawaii [Schiffman, P., Watters, R.J., Thompson, N., Walton, A.W., 2006. Hyaloclastites and the slope stability of Hawaiian volcanoes: insights from the Hawaiian Scientific Drilling Project's 3-km drill core. Journal of Volcanology and Geothermal Research, 151 (1-3): 217-228]. This study builds on that of Schiffman et al. [Schiffman, P., Watters, R.J., Thompson, N., Walton, A.W., 2006. Hyaloclastites and the slope stability of Hawaiian volcanoes: Insights from the Hawaiian Scientific Drilling Project's 3-km drill core. Journal of Volcanology and Geothermal Research, 151 (1-3): 217-228] by considering more in-depth rock mass classification and strength testing methods of the HSDP core. Geotechnical core logging techniques combined with laboratory strength testing methods show that rock strength differences exist within the edifice. Comparing the rock strength parameters obtained from the various volcano lithologies identified weak zones, suggesting the possible location of future slip surfaces for large flank failures. Relatively weak rock layers were recognized within poorly consolidated hyaloclastite zones, with increases in strength based on degree of alteration. Subaerial and submarine basalt flows are found to be significantly stronger. With the aid of digital elevation models, cross-sections have been developed of key flank areas on the island of Hawaii. Limit equilibrium slope stability analyses are performed on each cross-section using various failure criteria for the rock mass strength calculations. Based on the stability analyses the majority of the slopes analyzed are considered stable. In cases

  20. Geochemistry of summit fumarole vapors and flanking thermal/mineral waters at Popocatepetl Volcano, Mexico

    SciTech Connect

    Werner, C.; Goff, F.; Janik, C.J.

    1997-06-01

    Popocatepetl Volcano is potentially devastating to populations living in the greater Mexico City area. Systematic monitoring of fumarole gases and flanking thermal/mineral springs began in early 1994 after increased fumarolic and seismic activity were noticed in 1991. These investigations had two major objectives: (1) to determine if changes in magmatic conditions beneath Popocatepetl might be reflected by chemical changes in fumarolic discharges and (2) to determine if thermal/mineral spring waters in the vicinity of Popocatepetl are geochemically related to or influences by the magmatic system. This report summarizes results from these two discrete studies.

  1. Augmenting CRISPR applications in Drosophila with tRNA-flanked sgRNAs.

    PubMed

    Port, Fillip; Bullock, Simon L

    2016-10-01

    We present tRNA-based vectors for producing multiple clustered regularly interspaced short palindromic repeats (CRISPR) single guide RNAs (sgRNAs) from a single RNA polymerase II or III transcript in Drosophila. The system, which is based on liberation of sgRNAs by processing flanking tRNAs, permits highly efficient multiplexing of Cas9-based mutagenesis. We also demonstrate that the tRNA-sgRNA system markedly increases the efficacy of conditional gene disruption by Cas9 and can promote editing by the recently discovered RNA-guided endonuclease Cpf1.

  2. Territory Tenure Increases with Repertoire Size in Brownish-Flanked Bush Warbler

    PubMed Central

    Xia, Canwei; Wei, Chentao; Zhang, Yanyun

    2015-01-01

    Song repertoire size is often cited as a classic example of a secondary sexual trait in birds. Models of sexual selection and empirical tests of their predictions have often related secondary sexual traits to longevity. However, the relationship between repertoire size and longevity is unclear. Using capture-mark-recapture studies in two populations of the brownish-flanked bush warbler Cettia fortipes, we found that males with a repertoire size of three maintained territory tenure for a longer duration than did males with a repertoire size of two. These results provide evidence that even a minimal difference in repertoire size can serve as a potential signal of territory tenure capability. PMID:25822524

  3. Recognition of core and flanking amino acids of MHC class II-bound peptides by the T cell receptor.

    PubMed

    Sant'Angelo, Derek B; Robinson, Eve; Janeway, Charles A; Denzin, Lisa K

    2002-09-01

    CD4 T cells recognize peptides bound to major histocompatibility complex (MHC) class II molecules. Most MHC class II molecules have four binding pockets occupied by amino acids 1, 4, 6, and 9 of the minimal peptide epitope, while the residues at positions 2, 3, 5, 7, and 8 are available to interact with the T cell receptor (TCR). In addition MHC class II bound peptides have flanking residues situated outside of this peptide core. Here we demonstrate that the flanking residues of the conalbumin peptide bound to I-A(k) have no effect on recognition by the D10 TCR. To study the role of peptide flanks for recognition by a second TCR, we determined the MHC and TCR contacting amino acids of the I-A(b) bound Ealpha peptide. The Ealpha peptide is shown to bind I-A(b) using four alanines as anchor residues. TCR recognition of Ealpha peptides with altered flanking residues again suggested that, in general, no specific interactions occurred with the peptide flanks. However, using an HLA-DM-mediated technique to measure peptide binding to MHC class II molecules, we found that the peptide flanking residues contribute substantially to MHC binding.

  4. Computer numerically controlled (CNC) aspheric shaping with toroidal Wheels (Abstract Only)

    NASA Astrophysics Data System (ADS)

    Ketelsen, D.; Kittrell, W. C.; Kuhn, W. M.; Parks, R. E.; Lamb, George L.; Baker, Lynn

    1987-01-01

    Contouring with computer numerically controlled (CNC) machines can be accomplished with several different tool geometries and coordinated machine axes. To minimize the number of coordinated axes for nonsymmetric work to three, it is common practice to use a spherically shaped tool such as a ball-end mill. However, to minimize grooving due to the feed and ball radius, it is desirable to use a long ball radius, but there is clearly a practical limit to ball diameter with the spherical tool. We have found that the use of commercially available toroidal wheels permits long effective cutting radii, which in turn improve finish and minimize grooving for a set feed. In addition, toroidal wheels are easier than spherical wheels to center accurately. Cutting parameters are also easier to control because the feed rate past the tool does not change as the slope of the work changes. The drawback to the toroidal wheel is the more complex calculation of the tool path. Of course, once the algorithm is worked out, the tool path is as easily calculated as for a spherical tool. We have performed two experiments with the Large Optical Generator (LOG) that were ideally suited to three-axis contouring--surfaces that have no axis of rotational symmetry. By oscillating the cutting head horizontally or vertically (in addition to the motions required to generate the power of the surface) , and carefully coordinating those motions with table rotation, the mostly astigmatic departure for these surfaces is produced. The first experiment was a pair of reflector molds that together correct the spherical aberration of the Arecibo radio telescope. The larger of these was 5 m in diameter and had a 12 cm departure from the best-fit sphere. The second experiment was the generation of a purely astigmatic surface to demonstrate the feasibility of producing axially symmetric asphe.rics while mounted and rotated about any off-axis point. Measurements of the latter (the first experiment had relatively

  5. Unified error model based spatial error compensation for four types of CNC machining center: Part I-Singular function based unified error model

    NASA Astrophysics Data System (ADS)

    Fan, Kaiguo; Yang, Jianguo; Yang, Liyan

    2015-08-01

    To unify the error model for four types of CNC machining center, the comprehensive error model of each type of CNC machining center was established using the homogenous transformation matrix (HTM). The internal rules between the HTMs and the kinematic chains were analyzed in this research. The analysis results show that the HTM elements associated with the motion axes which are at the rear of the reference coordinate system are positive value. On the contrary, the HTM elements associated with the motion axes which are at the front of the reference coordinate system are negative value. To express these internal rules, the singular function was introduced to the HTMs. And a unified error model for four types of CNC machining center was established based on the HTM and the singular function. The unified error model includes 18 error elements which are the main factors affecting the machining accuracy of CNC machine tools. The practical results show that the unified error model is not only suitable for vertical machining center but also suitable for horizontal machining center.

  6. An open CAM system for dentistry on the basis of China-made 5-axis simultaneous contouring CNC machine tool and industrial CAM software.

    PubMed

    Lu, Li; Liu, Shusheng; Shi, Shenggen; Yang, Jianzhong

    2011-10-01

    China-made 5-axis simultaneous contouring CNC machine tool and domestically developed industrial computer-aided manufacture (CAM) technology were used for full crown fabrication and measurement of crown accuracy, with an attempt to establish an open CAM system for dental processing and to promote the introduction of domestic dental computer-aided design (CAD)/CAM system. Commercially available scanning equipment was used to make a basic digital tooth model after preparation of crown, and CAD software that comes with the scanning device was employed to design the crown by using domestic industrial CAM software to process the crown data in order to generate a solid model for machining purpose, and then China-made 5-axis simultaneous contouring CNC machine tool was used to complete machining of the whole crown and the internal accuracy of the crown internal was measured by using 3D-MicroCT. The results showed that China-made 5-axis simultaneous contouring CNC machine tool in combination with domestic industrial CAM technology can be used for crown making and the crown was well positioned in die. The internal accuracy was successfully measured by using 3D-MicroCT. It is concluded that an open CAM system for dentistry on the basis of China-made 5-axis simultaneous contouring CNC machine tool and domestic industrial CAM software has been established, and development of the system will promote the introduction of domestically-produced dental CAD/CAM system.

  7. Overview of the geology of the east flank of the Front Range

    SciTech Connect

    Grose, T.L.T.

    1993-12-31

    This paper describes the geology encountered as part of a geology field trip. This stop identifies the monocline that forms the east flank of the Front Range and the west flank of the Denver Basin. The stratigraphic section viewed in cross section to the south is composed of: (1) migmatitic quartzo-feldspathic gneiss of Early Proterozoic age; (2) red sandstone and conglomerate of the Pennsylvanian-Permian Fountain Formation, 1,700 Feet thick; (3) Lyons Sandstone of Permian age, 200 feet thick; (4) shale, siltstone, and limestone of the Lykins Formation of Permian and Triassic age, 200 Feet thick; (5) gypsum, shale, and limestone of the Ralston Creek Formation of Jurassic age, 90 feet thick; (6) sandstone, shale, and limestone of the Morrison Formation of Jurassic age, 300 feet thick, locally containing dinosaur bones; (7) Lower Cretaceous Dakota Group, including the Lytle Formation of sandstone and conglomerate, 80 feet thick, and the South Platte Formation of sandstone and shale, 220 feet thick.

  8. Development of PCR-based codominant markers flanking the Alt3 gene in rye.

    PubMed

    Miftahudin; Scoles, G J; Gustafson, J P

    2004-04-01

    Aluminum (Al) toxicity is considered to be a major problem for crop growth and production on acid soils. The ability of crops to overcome Al toxicity varies among crop species and cultivars. Rye (Secale cereale L.) is the most Al-tolerant species among the Triticeae. Our previous study showed that Al tolerance in a rye F6 recombinant inbred line (RIL) population was controlled by a single gene designated as the aluminum tolerance (Alt3) gene on chromosome 4RL. Based on the DNA sequence of a rice (Oryza sativa L.) BAC clone suspected to be syntenic to the Alt3 gene region, we developed two PCR-based codominant markers flanking the gene. These two markers, a sequence-tagged site (STS) marker and a cleaved amplified polymorphic sequence (CAPS) marker, each flanked the Alt3 gene at an approximate distance of 0.4 cM and can be used to facilitate high-resolution mapping of the gene. The markers might also be used for marker-assisted selection in rye or wheat (Triticum aestivum L.) breeding programs to obtain Al-tolerant lines and (or) cultivars.

  9. Detection and direct genomic sequencing of multiple rare unknown flanking DNA in highly complex samples.

    PubMed

    Schmidt, M; Hoffmann, G; Wissler, M; Lemke, N; Müssig, A; Glimm, H; Williams, D A; Ragg, S; Hesemann, C U; von Kalle, C

    2001-05-01

    By identifying the sequence of retro- and lentiviral integration sites in peripheral blood leukocytes, the clonal composition and fate of genetically modified hematopoietic progenitor and stem cells could be mapped in vitro and in vivo. Previously available methods have been limited to the analysis of mono- or oligoclonal integration sites present in high copy numbers. Here, we perform characterization of multiple rare retroviral and lentiviral integration sites in highly complex DNA samples. The reliability of this method results from nontarget DNA removal via magnetic extension primer tag selection (EPTS) preceding solid-phase ligation-mediated PCR. EPTS/LM-PCR allowed the simultaneous direct genomic sequencing of multiple proviral LTR-flanking sequences of retro- and lentiviral vectors even if only 1 per 100 to 1000 cells contained the provirus. A primer walking "around" the integration locus demonstrated the adaptability of EPTS/LM-PCR to study unknown flanking DNA regions unrelated to proviruses. The technique is fast, inexpensive, and sensitive in minimal samples. It enables studies of retro- and lentiviral integration, viral vector tracking in gene therapy, insertional mutagenesis, transgene integration, and direct genomic sequencing that until now have been difficult or impossible to perform.

  10. Volcano flank instability in the Lesser Antilles Arc: Diversity of scale, processes, and temporal recurrence

    NASA Astrophysics Data System (ADS)

    Boudon, Georges; Le Friant, Anne; Komorowski, Jean-Christophe; Deplus, Christine; Semet, Michel P.

    2007-08-01

    The 1997 Boxing Day collapse, a remarkable feature of the ongoing eruption of Soufrière Hills on Montserrat, has prompted new interest in the study of volcano stability in the Lesser Antilles. Building on a few cases documented in the literature, we have now identified at least 47 flank collapse events on volcanoes of the Caribbean arc where this type of behavior is characteristic and repetitive. About 15 events occurred on active volcanoes within the last 12,000 years. In the northern part of the arc, flank collapses are repetitive, do not exceed 1 km3 in volume, occur in all directions, and are promoted by intense hydrothermal alteration and well-developed fracturing of the summit part of the edifices. In contrast, infrequent but large sector collapses, with volumes up to tens of km3, are typical of the southern volcanoes. They are always directed to the west as a result of the high overall slopes of the islands toward the deep back-arc Grenada Basin. Because Caribbean islands are small, a large part of the resulting debris avalanches have flowed into the sea thus contributing voluminous and sudden inputs of volcaniclastic sediments to the Grenada Basin. Deposits from such submarine flows have been identified during the recent AGUADOMAR and CARAVAL oceanographic cruises and traced to their source structures on land. Edifice collapses have a major influence on subsequent volcanic activity but also are of high concern because of their tsunamigenic potential.

  11. Flanking sequence context-dependent transcription factor binding in early Drosophila development

    PubMed Central

    2013-01-01

    Background Gene expression in the Drosophila embryo is controlled by functional interactions between a large network of protein transcription factors (TFs) and specific sequences in DNA cis-regulatory modules (CRMs). The binding site sequences for any TF can be experimentally determined and represented in a position weight matrix (PWM). PWMs can then be used to predict the location of TF binding sites in other regions of the genome, although there are limitations to this approach as currently implemented. Results In this proof-of-principle study, we analyze 127 CRMs and focus on four TFs that control transcription of target genes along the anterio-posterior axis of the embryo early in development. For all four of these TFs, there is some degree of conserved flanking sequence that extends beyond the predicted binding regions. A potential role for these conserved flanking sequences may be to enhance the specificity of TF binding, as the abundance of these sequences is greatly diminished when we examine only predicted high-affinity binding sites. Conclusions Expanding PWMs to include sequence context-dependence will increase the information content in PWMs and facilitate a more efficient functional identification and dissection of CRMs. PMID:24093548

  12. Insulators recruit histone methyltransferase dMes4 to regulate chromatin of flanking genes

    PubMed Central

    Lhoumaud, Priscillia; Hennion, Magali; Gamot, Adrien; Cuddapah, Suresh; Queille, Sophie; Liang, Jun; Micas, Gael; Morillon, Pauline; Urbach, Serge; Bouchez, Olivier; Severac, Dany; Emberly, Eldon; Zhao, Keji; Cuvier, Olivier

    2014-01-01

    Chromosomal domains in Drosophila are marked by the insulator-binding proteins (IBPs) dCTCF/Beaf32 and cofactors that participate in regulating long-range interactions. Chromosomal borders are further enriched in specific histone modifications, yet the role of histone modifiers and nucleosome dynamics in this context remains largely unknown. Here, we show that IBP depletion impairs nucleosome dynamics specifically at the promoters and coding sequence of genes flanked by IBP binding sites. Biochemical purification identifies the H3K36 histone methyltransferase NSD/dMes-4 as a novel IBP cofactor, which specifically co-regulates the chromatin accessibility of hundreds of genes flanked by dCTCF/Beaf32. NSD/dMes-4 presets chromatin before the recruitment of transcriptional activators including DREF that triggers Set2/Hypb-dependent H3K36 trimethylation, nucleosome positioning, and RNA splicing. Our results unveil a model for how IBPs regulate nucleosome dynamics and gene expression through NSD/dMes-4, which may regulate H3K27me3 spreading. Our data uncover how IBPs dynamically regulate chromatin organization depending on distinct cofactors. PMID:24916307

  13. The CYP2B2 5' flank contains a complex glucocorticoid response unit.

    PubMed

    Audet-Walsh, Etienne; Lachaud, Antoine Amaury; Anderson, Alan

    2008-11-15

    Rat CYP2B1 and CYP2B2 and mouse CYP2B10 are dramatically induced by phenobarbital (PB) in liver. PB responsiveness requires the constitutive androstane receptor (CAR). However, dexamethasone treatment can also induce CYP2B genes in both rat and mouse liver. Three regions have been shown to be involved in conferring dexamethasone responsiveness on CYP2B2 reporter constructs. They are the PB response unit, a functional glucocorticoid response element at -1.3kb in the 5' flank and a weak element in the basal promoter. We report here the identification, by deletion analysis of the CYP2B2 5' flank, of new glucocorticoid response elements or accessory factor sites. Moreover, we show that CAR acts as an accessory factor in the dexamethasone response in vivo of CYP2B10 protein in mice, by increasing both the basal and induced levels. We propose a model to explain the dexamethasone responsiveness of the CYP2B2 gene in which induction is mediated by a complex glucocorticoid response unit.

  14. Different chromatin structures along the spacers flanking active and inactive Xenopus rRNA genes.

    PubMed Central

    Lucchini, R; Sogo, J M

    1992-01-01

    The accessibility of DNA in chromatin to psoralen was assayed to compare the chromatin structure of the rRNA coding and spacer regions of the two related frog species Xenopus laevis and Xenopus borealis. Isolated nuclei from tissue culture cells were photoreacted with psoralen, and the extent of cross-linking in the different rDNA regions was analyzed by using a gel retardation assay. In both species, restriction fragments from the coding regions showed two distinct extents of cross-linking, indicating the presence of two types of chromatin, one that contains nucleosomes and represents the inactive gene copies, and the other one which is more cross-linked and corresponds to the transcribed genes. A similar cross-linking pattern was obtained with restriction fragments from the enhancer region. Analysis of fragments including these sequences and the upstream portions of the genes suggests that active genes are preceded by nonnucleosomal enhancer regions. The spacer regions flanking the 3' end of the genes gave different results in the two frog species. In X. borealis, all these sequences are packaged in nucleosomes, whereas in X. laevis a distinct fraction, presumably those flanking the active genes, show a heterogeneous chromatin structure. This disturbed nucleosomal organization correlates with the presence of a weaker terminator at the 3' end of the X. laevis genes compared with those of X. borealis, which allows polymerases to transcribe into the downstream spacer. Images PMID:1406621

  15. Characterization of the Nanog 5′-flanking Region in Bovine

    PubMed Central

    Choi, Don-Ho; Kim, Duk-Jung; Song, Ki-Duk; Park, Hwan-Hee; Ko, Tae Hyun; Pyao, Yuliya; Chung, Ku-Min; Cha, Seok Ho; Sin, Young-Su; Kim, Nam-Hyung; Lee, Woon-Kyu

    2016-01-01

    Bovine embryonic stem cells have potential for use in research, such as transgenic cattle generation and the study of developmental gene regulation. The Nanog may play a critical role in maintenance of the undifferentiated state of embryonic stem cells in the bovine, as in murine and human. Nevertheless, efforts to study the bovine Nanog for pluripotency-maintaining factors have been insufficient. In this study, in order to understand the mechanisms of transcriptional regulation of the bovine Nanog, the 5′-flanking region of the Nanog was isolated from ear cells of Hanwoo. Results of transient transfection using a luciferase reporter gene under the control of serially deleted 5′-flanking sequences revealed that the −134 to −19 region contained the positive regulatory sequences for the transcription of the bovine Nanog. Results from mutagenesis studies demonstrated that the Sp1-binding site that is located in the proximal promoter region plays an important role in transcriptional activity of the bovine Nanog promoter. The electrophoretic mobility shift assay with the Sp1 specific antibody confirmed the specific binding of Sp1 transcription factor to this site. In addition, significant inhibition of Nanog promoter activity by the Sp1 mutant was observed in murine embryonic stem cells. Furthermore, chromatin-immunoprecipitation assay with the Sp1 specific antibody confirmed the specific binding of Sp1 transcription factor to this site. These results suggest that Sp1 is an essential regulatory factor for bovine Nanog transcriptional activity. PMID:27165025

  16. Character of shell beds flanking Herod Point shoal, southeastern Long Island Sound, New York

    USGS Publications Warehouse

    Poppe, L.J.; Williams, S.J.; Babb, Ivar G.

    2011-01-01

    High biogenic productivity, strong tidal currents, shoal topography, and short transport distances combine to favor shell-bed formation along the lower flanks of a cape-associated shoal off Herod Point on Long Island, New York. This shell bed has a densely packed, clast-supported fabric composed largely of undegraded surf clam (Spisula solidissima) valves. It is widest along the central part of the western flank of the shoal where topographic gradients are steep and a stronger flood tide results in residual flow. The bed is narrower and thinner toward the landward margins where currents are too weak to transport larger valves and topographic gradients are gentle, limiting bed-load transport mechanisms by which the shells are concentrated. Reconnaissance mapping off Roanoke Point suggests that shell beds are also present at the other cape-associated shoals off northeastern Long Island, where relatively similar geomorphic and oceanographic conditions exist. These shell beds are important to the Long Island Sound ecosystem because they provide complex benthic habitats of rough and hard substrates at the boundary between the muddy basin floor and mobile sand of the shoals. ?? 2011, the Coastal Education & Research Foundation (CERF).

  17. Stratigraphy and Characterization of Volcanic Deposits on the Northwestern Flanks of Mt. Makiling, Laguna, Philippines

    NASA Astrophysics Data System (ADS)

    Ybanez, R. L.; Bonus, A. A. B.; Judan, J. M.; Racoma, B. A.; Morante, K. A. M.; Balangue, M. I. R. D.

    2014-12-01

    Mt. Makiling is an inactive stratovolcano located in the province of Laguna. Semi-detailed geologic field mapping on the northwestern low-level flanks and apron of the volcano was conducted. Exposures reveal a volcanic terrain hosting a wide variety of volcanic rocks: lava flows, pyroclastic surges, pyroclastic flows, and tuff deposits. Stratigraphic logging of the volcanic deposits showed differences in occurrence of the deposit types as well as their characteristics. The pyroclastic flow deposits are found at the base of the column overlain by pyroclastic surges which were more common in the area. Capping the pyroclastic surges is a thin layer of tuffaceous units. Isolated deposits of lava flows of andesitic composition were mapped in the western flank of Mt. Makiling. These varying volcanic deposits are derived from different eruptive activities of Mt. Makiling, with at least three separate eruptive episodes indicated by the exposed deposits. Two separate explosive eruptions are marked by two different pyroclastic deposits, while an effusive episode, marked by andesitic lava flows, can also be identified. The pyroclastic surge deposit is uncharacteristically thick, around a hundred meters or more exposed, providing further questions as to the magnitude of past eruptions or the mechanism of pyroclastic material deposition around the volcano. Mt. Makiling, thus, has historically undergone different eruption types, but still releases generally the same material composition across varying deposits: intermediate or andesitic composition. This is consistent with the trend of Philippine volcanoes, and with the Macolod corridor which hosts this volcanic system.

  18. Crystal structure of PHO4 bHLH domain-DNA complex: flanking base recognition.

    PubMed Central

    Shimizu, T; Toumoto, A; Ihara, K; Shimizu, M; Kyogoku, Y; Ogawa, N; Oshima, Y; Hakoshima, T

    1997-01-01

    The crystal structure of a DNA-binding domain of PHO4 complexed with DNA at 2.8 A resolution revealed that the domain folds into a basic-helix-loop-helix (bHLH) motif with a long but compact loop that contains a short alpha-helical segment. This helical structure positions a tryptophan residue into an aromatic cluster so as to make the loop compact. PHO4 binds to DNA as a homodimer with direct reading of both the core E-box sequence CACGTG and its 3'-flanking bases. The 3'-flanking bases GG are recognized by Arg2 and His5. The residues involved in the E-box recognition are His5, Glu9 and Arg13, as already reported for bHLH/Zip proteins MAX and USF, and are different from those recognized by bHLH proteins MyoD and E47, although PHO4 is a bHLH protein. PMID:9303313

  19. Hydrothermal recharge and discharge across 50 km guided by seamounts on a young ridge flank.

    PubMed

    Fisher, A T; Davis, E E; Hutnak, M; Spiess, V; Zühlsdorff, L; Cherkaoui, A; Christiansen, L; Edwards, K; Macdonald, R; Villinger, H; Mottl, M J; Wheat, C G; Becker, K

    2003-02-06

    Hydrothermal circulation within the sea floor, through lithosphere older than one million years (Myr), is responsible for 30% of the energy released from plate cooling, and for 70% of the global heat flow anomaly (the difference between observed thermal output and that predicted by conductive cooling models). Hydrothermal fluids remove significant amounts of heat from the oceanic lithosphere for plates typically up to about 65 Myr old. But in view of the relatively impermeable sediments that cover most ridge flanks, it has been difficult to explain how these fluids transport heat from the crust to the ocean. Here we present results of swath mapping, heat flow, geochemistry and seismic surveys from the young eastern flank of the Juan de Fuca ridge, which show that isolated basement outcrops penetrating through thick sediments guide hydrothermal discharge and recharge between sites separated by more than 50 km. Our analyses reveal distinct thermal patterns at the sea floor adjacent to recharging and discharging outcrops. We find that such a circulation through basement outcrops can be sustained in a setting of pressure differences and crustal properties as reported in independent observations and modelling studies.

  20. Preliminary Results of Heat flow Measurements across the Eastern Flank of the Adare Trough, Antarctica

    NASA Astrophysics Data System (ADS)

    Hong, J. K.; Kim, Y. G.; Jin, Y. K.

    2015-12-01

    Marine heat flow measurement on the ridge is a direct and useful approach to know the current state of thermal regime below the lithosphere. Measurements in ridges located in the Antarctica are practically challenged by harsh conditions such as extensive and moving sea ice cover and stiff seafloor composed of diatomaceous sediments. We planned heat flow measurements across the Adare Trough, north of the Ross Sea, during the recent Korean icebreaker R/V Araon's Antarctic expedition (ANA05B; Dec 12th 2014-Feb 25th 2015) to get thermal information which is a missing piece in terms of geophysical data in this region to describe its asymmetric activity in spreading rate. Finally, we collected information only at three stations across the eastern flank of the Adare Trough over 70 km along with NBP9702 seismic line because of various limitations above. It is a preliminary result that observed heat flow seems significantly higher than estimated one from known magnetic anomaly age using a global age-heat flow curve. In order to conclude some suggestion, we need further studies regarding identification of 'real' heat flow from lithosphere, and increase of the number of data. More heat flow measurements will be carried out again on the eastern flank in the next Araon's Antarctic expedition (tentatively ANA06C; March 2016) to supplement the small number of data.

  1. Microbial community in black rust exposed to hot ridge flank crustal fluids.

    PubMed

    Nakagawa, Satoshi; Inagaki, Fumio; Suzuki, Yohey; Steinsbu, Bjørn Olav; Lever, Mark Alexander; Takai, Ken; Engelen, Bert; Sako, Yoshihiko; Wheat, Charles Geoffrey; Horikoshi, Koki

    2006-10-01

    During Integrated Ocean Drilling Program Expedition 301, we obtained a sample of black rust from a circulation obviation retrofit kit (CORK) observatory at a borehole on the eastern flank of Juan de Fuca Ridge. Due to overpressure, the CORK had failed to seal the borehole. Hot fluids from oceanic crust had discharged to the overlying bottom seawater and resulted in the formation of black rust analogous to a hydrothermal chimney deposit. Both culture-dependent and culture-independent analyses indicated that the black-rust-associated community differed from communities reported from other microbial habitats, including hydrothermal vents at seafloor spreading centers, while it shared phylotypes with communities previously detected in crustal fluids from the same borehole. The most frequently retrieved sequences of bacterial and archaeal 16S rRNA genes were related to the genera Ammonifex and Methanothermococcus, respectively. Most phylotypes, including phylotypes previously detected in crustal fluids, were isolated in pure culture, and their metabolic traits were determined. Quantification of the dissimilatory sulfite reductase (dsrAB) genes, together with stable sulfur isotopic and electron microscopic analyses, strongly suggested the prevalence of sulfate reduction, potentially by the Ammonifex group of bacteria. Stable carbon isotopic analyses suggested that the bulk of the microbial community was trophically reliant upon photosynthesis-derived organic matter. This report provides important insights into the phylogenetic, physiological, and trophic characteristics of subseafloor microbial ecosystems in warm ridge flank crusts.

  2. Sequences flanking the core-binding site modulate glucocorticoid receptor structure and activity

    PubMed Central

    Schöne, Stefanie; Jurk, Marcel; Helabad, Mahdi Bagherpoor; Dror, Iris; Lebars, Isabelle; Kieffer, Bruno; Imhof, Petra; Rohs, Remo; Vingron, Martin; Thomas-Chollier, Morgane; Meijsing, Sebastiaan H.

    2016-01-01

    The glucocorticoid receptor (GR) binds as a homodimer to genomic response elements, which have particular sequence and shape characteristics. Here we show that the nucleotides directly flanking the core-binding site, differ depending on the strength of GR-dependent activation of nearby genes. Our study indicates that these flanking nucleotides change the three-dimensional structure of the DNA-binding site, the DNA-binding domain of GR and the quaternary structure of the dimeric complex. Functional studies in a defined genomic context show that sequence-induced changes in GR activity cannot be explained by differences in GR occupancy. Rather, mutating the dimerization interface mitigates DNA-induced changes in both activity and structure, arguing for a role of DNA-induced structural changes in modulating GR activity. Together, our study shows that DNA sequence identity of genomic binding sites modulates GR activity downstream of binding, which may play a role in achieving regulatory specificity towards individual target genes. PMID:27581526

  3. Splicing of intron 3 of human BACE requires the flanking introns 2 and 4.

    PubMed

    Annies, Maik; Stefani, Muriel; Hueber, Andreas; Fischer, Frauke; Paganetti, Paolo

    2009-10-16

    Regulation of proteolytic cleavage of the amyloid precursor protein by the aspartic protease BACE may occur by alternative splicing and the generation of enzymatically inactive forms. In fact, the presence of exonic donor and acceptor sites for intron 3 generates the two deficient variants BACE457 and BACE476. In HEK293 cells, when introns are inserted separately in the BACE cDNA, we found that whilst introns 2 and 4 are efficiently spliced out, intron 3 is not removed. On the other hand, splicing to wild-type BACE is restored when intron 3 is flanked by the two other introns. The presence of all three introns also leads to alternative splicing of intron 3 and the generation of BACE476. In contrast, BACE457 expression takes place only after mutating the donor splice site of intron 3, indicating that additional regulatory elements are necessary for the use of the splicing site within exon 4. Overall, our data demonstrate that a complex splicing of intron 3 regulates the maturation of the BACE mRNA. This appears orchestrated by domains present in the exons and introns flanking intron 3. Excessive BACE activity is a risk factor for Alzheimer's disease, therefore this complex regulation might guarantee low neuronal BACE activity and disease prevention.

  4. Renal infarction versus pyelonephritis in a woman presenting with fever and flank pain.

    PubMed

    Piccoli, Giorgina B; Priola, Adriano M; Vigotti, Federica N; Guzzo, Gabriella; Veltri, Andrea

    2014-08-01

    Patients with fever, flank pain, and dysuria frequently are encountered in the emergency department. Acute pyelonephritis is the most likely diagnosis; however, its clinical and radiologic presentation consistently overlap with that of acute renal infarction. Ultrasound is unable to distinguish early infarction from nonabscessed acute pyelonephritis. Hence, computed tomography or magnetic resonance imaging are needed. We report the case of a 68-year-old woman who presented with fever, flank pain, and dysuria, along with respiratory distress and tachycardia. Elevated values for inflammatory indexes suggested a diagnosis of acute pyelonephritis, and subsequent contrast-enhanced computed tomography showed hypodense wedge-shaped areas in both kidneys. However, the presence of a thin rim of capsular enhancement (cortical rim sign), the absence of perirenal inflammatory changes, and the location of the lesions apart from defined calyces suggested the alternative diagnosis of renal infarction. The underlying cause was not identified until an episode of acute dyspnea revealed paroxysmal arrhythmia. Our case demonstrates that a thorough knowledge of the imaging findings of renal infarction and acute pyelonephritis is essential to correctly making the diagnosis.

  5. Investigating the probability of sign inconsistency in the regression coefficients of markers flanking quantitative trait loci.

    PubMed Central

    Hwang, J T Gene; Nettleton, Dan

    2002-01-01

    Estimates of the locations and effects of quantitative trait loci (QTL) can be obtained by regressing phenotype on marker genotype. Under certain basic conditions, the signs of regression coefficients flanking QTL must be the same. There is no guarantee, however, that the signs of the regression coefficient estimates will be the same. We use sign inconsistency to describe the situation in which there is disagreement between the signs of the estimated regression coefficients flanking QTL. The presence of sign inconsistency can undermine the effectiveness of QTL mapping strategies that presume intervals whose markers have regression coefficient estimates of differing sign to be devoid of QTL. This article investigates the likelihood of sign inconsistency under various conditions. We derive an analytic expression for the approximate probability of sign inconsistency in the single-QTL case. We also examine sign inconsistency probabilities when multiple QTL are present through simulation. We have discovered that the probability of sign inconsistency can be unacceptably high, even when the conditions for QTL detection are otherwise quite favorable. PMID:11973322

  6. Electromagnetic evidence for an ancient avelanche caldera rim onthe south flank of mount merapi, indonesia

    SciTech Connect

    Kalscheuer, T.; Commer, M.; Helwig, S.L.; Hoerdt, A.; Tezkan, B.

    2006-02-28

    Long-Offset Transient Electromagnetic (LOTEM) data andVIBROTEM data from the south flank of Mount Merapi on Java island,Indonesia, are interpreted with one-dimensional (1D) inversions as wellas two-dimensional (2D) forward modelling. One-dimensional jointinversions of several components of the electromagnetic field withOccam's method reduce the number of equivalent models, which were derivedfrom inversions of single components and fit the data to a similarmisfit. The 1D results, together with results from other geophysicalmeasurements, serve as the basic model for further 2D forward modelling.The final model depicts a layering that follows the topography of thestrato-volcano. In the depth range of 500 m to 1000 m, the resistivity ofthe layers decreases rapidly downwards into a good conductor withresistivities below 10 OMEGAm. The deepest layer has a resistivity of 0.4OMEGAm which is quantitatively explained with a combination of salinefluids and hydrothermally altered minerals. Furthermore, the final modelsupports a hypothesis from the interpretation of central-loop TEM(Transient Electromagnetic) data that there is a fault structure belowthe southern flank, approximately 7.3 km south of the summit. To thenorth of the fault, the top of the good conductor is lowered from a depthof 500 m to 1000 m. We propose that the fault structure coincides with anancient avalanche caldera rim.

  7. Role of large flank-collapse events on magma evolution of volcanoes. Insights from the Lesser Antilles Arc

    NASA Astrophysics Data System (ADS)

    Boudon, G.; Villemant, B.; Le Friant, A.; Paterne, M.; Cortijo, E.

    2012-12-01

    Flank-collapse events are now recognized as common process of destruction of volcanoes. They can occur several times on a volcanic edifice and may involve a large range of volume of material from km3 to thousands of km3. Large flank-collapse events may have significant effects on magma eruption and evolution. The load exerted by the volcanic edifice on the plumbing system and the magma chamber acts as a density filter for magma ascent. Magmas denser than the density threshold are stored within the magma chamber where they differentiate and thus become less dense with time which favours their eruption. When a flank-collapse event occurs the edifice load suddenly decreases which decreases the density threshold allowing denser magmas to ascend and erupt. Thus construction and destruction of volcanic edifices may control both differentiation and eruptive processes. In the Lesser Antilles Arc, a large number of flank-collapse events have been identified. Here, we show that some of the largest events are correlated to significant variations in erupted magma compositions and eruptive styles. On Montagne Pelée, after the 32 kys old flank-collapse event, the magma production rate is sustained during several thousand years: basic and dense magmas were emitted through open-vent eruptions that generated abundant scoria flows. The pre-flank collapse activity produced significantly more acidic magmas. The rapid building of a new cone after the flank collapse progressively increased the load and the density threshold, leading to a decrease in magma production rate and a change in the magma composition of the erupted products. They are more acidic and less dense and thus generate plinian and dome-forming eruptions up to present. On the contrary, at Soufrière Volcanic Centre of St Lucia and at Pitons du Carbet in Martinique, the flank collapses have an opposite effect: in both cases, more acidic magmas erupted after the flank collapse events. These magmas are highly crystallized

  8. Seismic Evidence of Abundant Flank Magmatism at the Endeavour Segment, Juan de Fuca Ridge

    NASA Astrophysics Data System (ADS)

    Hooft, E. E.; Wells, A. E.; Toomey, D. R.; Wilcock, W. S.

    2013-12-01

    Oceanic crust forms primarily within a narrow, several-kilometer wide, neovolcanic zone at mid-ocean ridges; however, there is an increasing recognition that crustal structure at fast-spreading ridges is modified by off-axis magmatism. Here we use seismic data to show that flank magmatism is also common at an intermediate spreading-rate ridge. We detect several crustal-level, low-velocity, high-attenuation regions on the eastern and western ridge flanks, 7 to 16 km from the neovolcanic zone at the Endeavour segment of the Juan de Fuca Ridge. Seismic refraction data were collected using 64 ocean bottom seismometers (OBSs) and 5,567 airgun shots from the 6600 in3 airgun array of the R/V Marcus G. Langseth in a region extending along the entire ridge segment and out to ~30 km from the rise axis on either side. We observe amplitude anomalies for crustal phases, Pg, for a variety of source-receiver azimuths indicative of numerous anomalous seismic regions on the ridge flanks. We use finite-difference waveform forward modeling to estimate the dimensions, depth, and seismic properties of two of the inferred anomalous regions. The attenuating regions extend horizontally from 2 to 15 km beneath off-axis, ridge-parallel bathymetric highs and from 2 to 4 km below the seafloor. The velocity reduction and the attenuation anomalies suggest the presence of high temperatures and perhaps a small percentage of melt. One anomalous region is associated with a mid-crustal reflector observed in multi-channel seismic data and other mid-crustal reflectors are also present off axis in the region. We attribute the observed seismic anomalies to off-axis magmatic intrusions. Seismic tomography has shown that the upper-crustal, low-velocity layer is thickened on the outer flanks of these highs. This suggests that off-axis volcanism could contribute to the formation of the highs, with erupted lava flowing down the off-axis slopes forming the thicker upper-crustal low-velocity layer. The

  9. A deep scar in the flank of Tenerife (Canary Islands): Geophysical contribution to tsunami hazard assessment

    NASA Astrophysics Data System (ADS)

    Coppo, Nicolas P.; Schnegg, Pierre-André; Falco, Pierik; Costa, Roberto

    2009-05-01

    Among the high-intensity on-Earth tsunami generating events, seismicity, submarine landslides, and volcano lateral collapses are the most important [Ward, S.H., 2001. Landslide tsunami. J. Geophy. Res. 106, 11201-11215; Holcomb, R.T., Searle, R.C., 1991. Large landslides from oceanic volcanoes. Mar. Geotech. 10, 19-32; Tinti, S., Bortolucci, E., Romagnoli, C., 2000. Computer simulations of tsunamis due to the sector collapse ar Stromboli, Italy. J. Volcano. Geotherm. Res. 96, 103-128; Ward, S.N., Day, S., 2003. Ritter Island Volcano — lateral collapse and the tsunami of 1888. Geophys. J. Int. 154, 891-902; MacGuire, W.J., 2003. Volcano instability and lateral collapse. Revista 1, 33-45]. Offshore bathymetry studies highlighted huge accumulations of large mass-waste flows (up to thousands cubic kilometres) inherited from past lateral collapses or submarine landslides [ Le Friant, A., Boudon, G., Deplus, C., Villemant, B., 2003. Large-scale flank collapse events during the activity of Montagne Pelée, Martinique, Lesser Antilles. J. Geophys. Res. 108, ECV13; Moore, J.G. et al., 1989. Prodigious submarine Landslides on the Hawaiian ridge. J. Geophys. Res. 94, 17465-17484] which spread over more than 100 km off the northern Tenerife (Canary Islands) coastline [Watts, A.B., Masson, D.G., 1995. A giant landslide on the north flank of Tenerife, Canary Islands. J. Geophys. Res. 100, 24487-24498]. Although mechanics and dynamics triggering such catastrophic events follow from combined complex processes and interactions [Hürlimann, M., Garcia-Piera, J.-O., Ledesma, A., 2000. Causes and mobility of large volcanic landslides: application to Tenerife, Canary Islands. J. Volcano. Geotherm. Res. 103, 121-134; Masson, D.G. et al., 2002. Slope failures on the flanks of the western Canary Islands. Earth-Sci. Rev. 57, 1-35; Reid, M.E., Sisson, T.W., Brien, D.L., 2001. Volcano collapse promoted by hydrothermal alteration and edifice shape, Mount Rainier, Washington. Geology 29, 779

  10. Multidisciplinary geophysical study of the NE sector of the unstable flank of Etna volcano

    NASA Astrophysics Data System (ADS)

    Bonforte, Alessandro; Cocina, Ornella; Siniscalchi, Agata; Barberi, Graziella; Guglielmino, Francesco; Romano, Gerardo; Sicali, Simona; Tripaldi, Simona

    2015-04-01

    On volcanic areas, usually characterized by complex structural environments, a lot of independent geophysical studies are usually performed. The non-uniqueness of the geophysical inverse models, the different level of resolution and sensitivity of the results spurred us to integrate independent geophysical datasets and results collected on Mt. Etna volcano, in order to obtain more accurate and reliable model interpretation. Mt. Etna volcano is located along the eastern coast of Sicily and it is characterized by a complex structural setting. In this region, the general N-S compressive regime related to the Africa - Europe collision interacts with the WNW-ESE extensional regime associated to the Malta Escarpment dynamics, observable along the eastern coast of Sicily. At Mt Etna, a great number of studies concerns the existence of instability phenomena; a general eastward motion of the eastern flank of the volcano has been measured with always increasing detail and its relationship with the eruptive and magmatic activity is being investigated. The unstable flank appears bounded to the north by the E-W-trending Provenzana - Pernicana Fault System and to the SW by the NS Ragalna Fault system. Eastwards, this area is divided by several NW-SE trending faults. Recent studies consider this area as divided into several blocks characterized by different shape and kinematics. Ground deformation studies (GPS and InSAR) define the NE portion of the unstable flank as the most mobile one. In the frame of the MEDiterranean Supersites Volcanoes (MED-SUV) project, ground deformation data (GPS and INSAR), 3D seismicity, seismic tomography and two resistivity model profiles, have been analyzed together, in order to put some constraints on the deep structure of the NE sector of the unstable flank. Seismic data come from the permanent network run by the Istituto Nazionale di Geofisica e Vulcanologia (INGV) - Sezione di Catania, Osservatorio Etneo. Ground deformation data comes from In

  11. Ecological Resilience and Resistance in the Hyper Diverse Forests on the Eastern Andean Flank (Mera, Ecuador)

    NASA Astrophysics Data System (ADS)

    Keen, H. F.; Gosling, W. D.; Montoya, E.; Sherlock, S.; Mothes, P. A.

    2014-12-01

    Today the Neotropics contain some of the world's most biodiverse and threatened ecosystems. Sediments obtained from two radiocarbon infinite (>48,000 years) stratigraphic sections on the eastern Andean flank, provide new insight into the relationship between biodiversity and disturbance during the Pleistocene (~200,000 years). Pollen analysis of modern and fossil material indicates that hyper diverse forest vegetation has been a feature of the Andean flank landscape for 100,000 years (pollen richness: modern = 44, fossil = 48). Correlation of past vegetation with disturbance events (volcanic and fluvial) indicates the response of hyper-diverse forest to past landscape scale change. Pollen records from near Mera (01°27 S, 78°06 W; 1117 m asl) indicate two major changes in the pollen assemblage, with forest communities dominated by: i) Hedyosmum-Alnus-Ilex, and ii) Combretaceae-Melastomataceae-Myrtaceae. These two pollen assemblages most closely resemble modern vegetation cloud forest (2500-3400m asl) and lower montane rain forest (700-2499 m asl) respectively. Sedimentary evidence suggests that at least 21 volcanic events and three changes in the local fluvial regime perturbed the regional landscape during the period of deposition. However, there is no evidence for volcanic or fluvial disturbance events causing a persistent change in vegetation community. Volcanic events (tephra deposits) are associated with increased fire (charcoal particles), and changes in vegetation (pollen grains); however, within ~50cm of sediment accumulation above each tephra, pollen assemblages revert to pre-deposition compositions. Increased fluvial influence (gravel deposits) is associated with elevated input of pollen from taxa today found at higher elevations (Podocarpus-Celtis). The input of high elevation taxa concomitant with fluvial deposits is most likely indicative of an increase in long-distance transport of pollen along water courses originating in the Andes. Our data indicate

  12. Distinct sources of particles near the cusp and the dusk flank of the magnetosphere

    NASA Astrophysics Data System (ADS)

    Escoubet, C. P.; Grison, B.; Berchem, J.; Trattner, K. J.; Lavraud, B.; Pitout, F.; Soucek, J.; Richard, R. L.; Laakso, H. E.; Masson, A.; Dunlop, M.; Dandouras, I. S.; Rème, H.; Fazakerley, A. N.; Daly, P. W.

    2015-12-01

    At the magnetopause, the location of the magnetic reconnection sites depends on the orientation of the interplanetary magnetic field (IMF) in the solar wind: on the dayside magnetosphere for an IMF southward, on the lobes for an IMF northward and on the flanks for an IMF in the East-West direction. Since most of observations of reconnection events have sampled a limited region of space simultaneously it is still not yet know if the reconnection line is extended over large regions of the magnetosphere or if is patchy and made of many reconnection lines. We report a Cluster crossing on 5 January 2002 near the exterior cusp on the southern dusk side where we observe multiple sources of reconnection/injections. The IMF was mainly azimuthal (IMF-By around -5 nT), the solar wind speed lower than usual around 280 km/s with the density of order 5 cm-3. The four Cluster spacecraft had an elongated configuration near the magnetopause. C4 was the first spacecraft to enter the cusp around 19:52:04 UT, followed by C2 at 19:52:35 UT, C1 at 19:54:24 UT and C3 at 20:13:15 UT. C4 and C1 observed two ion energy dispersions at 20:10 UT and 20:40 UT and C3 at 20:35 UT and 21:15 UT. Using the time of flight technique on the upgoing and downgoing ions, which leads to energy dispersions, we obtain distances of the ion sources between 14 and 20 RE from the spacecraft. The slope of the ion energy dispersions confirmed these distances. Using Tsyganenko model, we find that these sources are located on the dusk flank, past the terminator. The first injection by C3 is seen at approximately the same time as the 2nd injection on C1 but their sources at the magnetopause were separated by more than 7 RE. This would imply that two distinct sources were active at the same time on the dusk flank of the magnetosphere. In addition, a flow reversal was observed at the magnetopause on C4 which would be an indication that reconnection is also taking place near the exterior cusp quasi-simultaneously. A

  13. Recurrent large-scale landsliding on the west flank of La Palma, Canary Islands

    NASA Astrophysics Data System (ADS)

    Urgeles, Roger; Masson, Douglas G.; Canals, Miquel; Watts, Anthony B.; Le Bas, Tim

    1999-11-01

    A large area of debris avalanche deposits has been discovered on the western submarine flanks of the island of La Palma. Multibeam bathymetry and its derivative backscatter data, Towed Ocean Bottom Instrument (TOBI) sidescan sonar images, and 3.5 kHz and airgun seismic reflection data have been used to identify at least two, and possibly as many as four, major landslide events. The youngest of the events, the Cumbre Nueva Debris Avalanche, extends onshore into the valleys bounded by the Caldera de Taburiente and Cumbre Nueva Ridge, which mark the degraded collapse scars. Radiometric dating of the volcanic flows in the headwall indicate an age of between 536 and 125 ka for this landslide. The debris avalanche covers an area of 780 km2, has a maximum thickness of 500 m, and has an estimated volume of 95 km3. Older deposits, collectively referred to as the Playa de la Veta Debris Avalanche Complex, are probably, as the name indicates, an amalgamation of at least two or three events rather than the result of a single catastrophic failure. The Playa de la Veta Debris Avalanche Complex is associated onshore with an unconformity dated as late Matuyama (1 Ma to 800 ka). It covers an area of 1200 km2, has a maximum thickness of 1300 m, and may represent a total volume of up to 650 km3. The greater thicknesses and limited areas occupied by debris avalanches on the western flank of La Palma, compared to other landslides in the Canary Archipelago, suggest that the La Palma landslide masses have relatively low mobility. The different debris avalanche lobes formed by each landslide event are separated by channels 2-2.5 km wide. The clear relationship between channel position and the boundaries of each debris avalanche lobe indicates that debris avalanches control later channel formation and pathways. The relief of the submarine flanks of the La Palma volcanoes, in the areas of island slope unaffected by landslides, is mainly the result of constructional volcanic processes

  14. Improvement of the oblique-incidence optical interferometric system to measure tooth flanks of involute helical gears.

    PubMed

    Fang, Suping; Wang, Leijie; Yang, Pengcheng; Meng, Lei; Komori, Masaharu; Kubo, Aizoh

    2011-04-01

    We put forward a plan of improving the oblique-incidence optical interferometric system applied in the measurement of tooth flanks of an involute spur gear in order to expand its capability to measure an involute helical gear. On the basis of the features of an involute helical tooth flank, we discuss how to realize the parallelism between the optical axis of the object arm of the optical system and the straight lines constructing the involute helical tooth flank. This parallelism helps the optical system produce an interference fringe pattern as clear as the one of an involute spur gear [Appl. Opt.49, 6409 (2010).]. A numerical simulation is then performed to examine the correctness of the improvement. During simulating, we unify the equation of difference tooth flanks by means of importing two parameters in relation to the left or right side of a tooth flank and the helical direction of teeth, respectively. Finally, the actual experiment is fulfilled through the real optical system built on an optical table. The simulation and experiment results verify the correctness and feasibility of the proposed improvement.

  15. Quasi-two-dimensional antiferromagnetism in Fe[S2CNC4H8]2I

    NASA Astrophysics Data System (ADS)

    Lukin, J. A.; Friedberg, S. A.; DeFotis, G. C.; Chamberlain, R. V.

    1993-05-01

    Recent studies of the magnetic susceptibility of powdered Fe[S2CNC4H8]2I confirm that Fe(III) in this salt is in the unusual spin state S=3/2 and that the system behaves as a quasi-2D antiferromagnet. Analysis of the data indicates that the ‖±1/2≳ ground doublet is separated by Δ/k=18.7 K from an excited ‖±3/2≳ doublet. We have now measured the heat capacity of polycrystalline Fe[S2CNC4H8]2I between 0.5 and 80 K in a liquid 3He-cooled calorimeter. CP exhibits a λ-type peak at TN=2.18±0.01 K. The critical entropy, S(TN)=0.25R ln2, indicates that most of the spin order is of a short-range, low-dimensional nature. The contribution of lattice vibrations to CP was estimated using the method of Sorai and Seki [J. Phys. Soc. Jpn. 32, 382 (1972)], which assumes a Schottky contribution from two doublets whose separation Δ was determined from the magnetic data. At the same time, the cooperative peak was reasonably represented by the results for the 2D S=1/2 XY model with Jxy/k=-2.18 K. In order to obtain a self-consistent fit of the lattice heat capacity, however, it was necessary to use a larger splitting (Δ/k=32 K) than that found from susceptibility data. This discrepancy between the doublet-doublet separations indicated by χ and CP measurements may suggest a possible temperature dependence of Δ.

  16. Computer numerical control (CNC) lithography: light-motion synchronized UV-LED lithography for 3D microfabrication

    NASA Astrophysics Data System (ADS)

    Kim, Jungkwun; Yoon, Yong-Kyu; Allen, Mark G.

    2016-03-01

    This paper presents a computer-numerical-controlled ultraviolet light-emitting diode (CNC UV-LED) lithography scheme for three-dimensional (3D) microfabrication. The CNC lithography scheme utilizes sequential multi-angled UV light exposures along with a synchronized switchable UV light source to create arbitrary 3D light traces, which are transferred into the photosensitive resist. The system comprises a switchable, movable UV-LED array as a light source, a motorized tilt-rotational sample holder, and a computer-control unit. System operation is such that the tilt-rotational sample holder moves in a pre-programmed routine, and the UV-LED is illuminated only at desired positions of the sample holder during the desired time period, enabling the formation of complex 3D microstructures. This facilitates easy fabrication of complex 3D structures, which otherwise would have required multiple manual exposure steps as in the previous multidirectional 3D UV lithography approach. Since it is batch processed, processing time is far less than that of the 3D printing approach at the expense of some reduction in the degree of achievable 3D structure complexity. In order to produce uniform light intensity from the arrayed LED light source, the UV-LED array stage has been kept rotating during exposure. UV-LED 3D fabrication capability was demonstrated through a plurality of complex structures such as V-shaped micropillars, micropanels, a micro-‘hi’ structure, a micro-‘cat’s claw,’ a micro-‘horn,’ a micro-‘calla lily,’ a micro-‘cowboy’s hat,’ and a micro-‘table napkin’ array.

  17. Control Study for Five-axis Dynamic Spin Rig Using Magnetic Bearings

    NASA Technical Reports Server (NTRS)

    Choi, Benjamin; Johnson, Dexter; Provenza, Andrew; Morrison, Carlos; Montague, Gerald

    2003-01-01

    The NASA Glenn Research Center (GRC) has developed a magnetic bearing system for the Dynamic Spin Rig (DSR) with a fully suspended shaft that is used to perform vibration tests of turbomachinery blades and components under spinning conditions in a vacuum. Two heteropolar radial magnetic bearings and a thrust magnetic bearing and the associated control system were integrated into the DSR to provide magnetic excitation as well as non-contact mag- netic suspension of a 15.88 kg (35 lb) vertical rotor with blades to induce turbomachinery blade vibration. For rotor levitation, a proportional-integral-derivative (PID) controller with a special feature for multidirectional radial excitation worked well to both support and shake the shaft with blades. However, more advanced controllers were developed and successfully tested to determine the optimal controller in terms of sensor and processing noise reduction, smaller rotor orbits, more blade vibration amplitude, and energy savings for the system. The test results of a variety of controllers that were demonstrated up to 10.000 rpm are shown. Furthermore, rotor excitation operation and conceptual study of active blade vibration control are addressed.

  18. Optimal Controller Tested for a Magnetically Suspended Five-Axis Dynamic Spin Rig

    NASA Technical Reports Server (NTRS)

    Choi, Benjamin B.

    2003-01-01

    NASA Glenn Research Center's Structural Mechanics and Dynamics Branch has developed a fully suspended magnetic bearing system for their Dynamic Spin Rig, which performs vibration tests of turbomachinery blades and components under spinning conditions in a vacuum. Two heteropolar radial magnetic bearings and a thrust magnetic bearing and the associated control system were integrated into the Dynamic Spin Rig to provide magnetic excitation as well as noncontact magnetic suspension of the 35-lb vertical rotor with blades to induce turbomachinery blade vibration (ref. 1). The new system can provide longer run times at higher speeds and larger vibration amplitudes for rotating blades. Also, it was proven that bearing mechanical life was substantially extended and flexibility was increased in the excitation orientation (direction and phasing).

  19. Flanking sequences modulate diepoxide and mustard cross-linking efficiencies at the 5'-GNC site.

    PubMed

    Sawyer, Gregory A; Frederick, Elizabeth D; Millard, Julie T

    2004-08-01

    Diepoxybutane, diepoxyoctane, and mechlorethamine are cytotoxic agents that induce interstrand cross-links between the N7 positions of deoxyguanosine residues on opposite strands of the DNA duplex preferentially at 5'-GNC sequences. We have systematically varied the identity of either the base 5' to the cross-linked deoxyguanosine residues or the intervening base pair to determine flanking sequence effects on cross-linking efficiency. We used synthetic DNA oligomers containing four 5'-N(1)GN(2)C sites that varied either N(1) or N(2). Interstrand cross-links were purified through denaturing polyacrylamide gel electrophoresis and then subjected to piperidine cleavage. The amount of cleavage at each deoxyguanosine residue, representative of cross-linking efficiency at that site, was determined by sequencing gel analysis. Our data suggest that cross-linking efficiency varies with the identity of N(1) similarly (purines > pyrimidines) for diepoxybutane, diepoxyoctane, and mechlorethamine but that the effects of N(2) differ for the three compounds.

  20. Chandra X-ray Observations of Young Clusters. Volume II; Orion Flanking Fields Data

    NASA Technical Reports Server (NTRS)

    Ramirez, Solange V.; Rebull, Luisa; Stauffer, John; Strom, Stephen; Hillenbrand, Lynne; Hearty, Thomas; Kopan, Eugene L.; Pravdo, Steven; Makidon, Russell; Jones, Burton

    2004-01-01

    We present results of Chandra observations of two flanking fields (FFs) in Orion, outside the Orion Nebula Cluster (ONC). The observations were taken with the ACIS-I camera with an exposure time of about 48 ks each field. We present a catalog of 417 sources, which includes X-ray luminosity, optical and infrared photometry, and X-ray variability information. We have found 91 variable sources, 33 of which have a flarelike light curve and 11 of which have a pattern of a steady increase or decrease over a 10 hr period. The optical and infrared photometry for the stars identified as X-ray sources are consistent with most of these objects being pre-main-sequence stars with ages younger than 10 Myr. We present evidence for an age difference among the X-ray-selected samples of NGC 2264, Orion FFs, and ONC, with NGC 2264 being the oldest and ONC being the youngest.

  1. Sangre de Cristo Mountains: East flank Culebra range thrust fault and Raton basin prospects, Colorado

    SciTech Connect

    Ericson, E.K.

    1989-09-01

    Drilling in the Stonewall area west of Trinidad confirms seismic evidence of major thrust faulting displacing the surface complex a minimum of 2.5 km (1.5 mi) eastward over the west flank of the Raton basin. There is no direct evidence of this master fault where it apparently intersects the surface in the poorly exposed Pierre Shale section east of the Dakota stonewall. This mountain-to-basin relationship has been established in some of the frontal ranges to the north, but it had not been proven in this part of the Sangre de Cristo. Although commercial hydrocarbons were not found in this test, the structural information provides encouragement for exploration of hidden traps in other sectors of the mountain front.

  2. Thermochronologic constraints on Jurassic rift flank denudation in the Thiel Mountains, Antarctica

    USGS Publications Warehouse

    Fitzgerald, P.G.; Baldwin, S.L.

    2007-01-01

    The Thiel Mountains are part of the Transantarctic Mountains (TAM) and occupy a strategic position close to the East-West Antarctic boundary. They occur in a region of relatively subdued topography distal from high topography and high relief of most of the TAM adjacent to the West Antarctic rift system. Low-temperature thermochronology on samples collected from the Reed Ridge granite on the north flank of the Thiel Mountains constrain the thermal and hence tectonic history. Apatite fission track data plus thermal models indicate cooling from ca. 165-150 Ma. In conjunction with 40Ar/39Ar K-feldspar data, the results indicate cooling was due to relatively slow erosional denudation, and not thermal relaxation following Jurassic tholeiitic magmatism. Denudation was most likely associated with the formation of the Jurassic rift system across Antarctica that marked the initial breakup of Gondwana. This is the oldest episode of denudation associated with formation of the present day TAM

  3. Introns and their flanking sequences of Bombyx mori rDNA.

    PubMed Central

    Fujiwara, H; Ogura, T; Takada, N; Miyajima, N; Ishikawa, H; Maekawa, H

    1984-01-01

    We obtained two different clones (16 kb and 13 kb) of B. mori rDNA with intron sequence within the 28S-rRNA coding region. The sequence surrounding the intron was found to be highly conserved as indicated in several eukaryotes (Tetrahymena, Drosophila and Xenopus). The 28S rRNA-coding sequence of 16 kb and 13 kb clone was interrupted at precisely the same sites as those where the D. melanogaster rDNA interrupted by the type I and type II intron, respectively. The intron sequences of B. mori were different from those of D. melanogaster. In 16 kb clone, the intron was flanked by 14 bp duplication of the junction sequence, which was also present once within the 28S rRNA-coding region of rDNA without intron. This 14 bp sequence was identical with those surrounding the introns of Dipteran rDNAs. PMID:6091041

  4. Simulation method for interference fringe patterns in measuring gear tooth flanks by laser interferometry.

    PubMed

    Fang, Suping; Wang, Leijie; Komori, Masaharu; Kubo, Aizoh

    2010-11-20

    We present a ray-tracing-based method for simulation of interference fringe patterns (IFPs) for measuring gear tooth flanks with a two-path interferometer. This simulation method involves two steps. In the first step, the profile of an IFP is achieved by means of ray tracing within the object path of the interferometer. In the second step, the profile of an IFP is filled with interference fringes, according to a set of functions from an optical path length to a fringe gray level. To examine the correctness of this simulation method, simulations are performed for two spur involute gears, and the simulated IFPs are verified by experiments using the actual two-path interferometer built on an optical platform.

  5. The response of vegetation on the Andean flank in western Amazonia to Pleistocene climate change.

    PubMed

    Cárdenas, Macarena L; Gosling, William D; Sherlock, Sarah C; Poole, Imogen; Pennington, R Toby; Mothes, Patricia

    2011-02-25

    A reconstruction of past environmental change from Ecuador reveals the response of lower montane forest on the Andean flank in western Amazonia to glacial-interglacial global climate change. Radiometric dating of volcanic ash indicates that deposition occurred ~324,000 to 193,000 years ago during parts of Marine Isotope Stages 9, 7, and 6. Fossil pollen and wood preserved within organic sediments suggest that the composition of the forest altered radically in response to glacial-interglacial climate change. The presence of Podocarpus macrofossils ~1000 meters below the lower limit of their modern distribution indicates a relative cooling of at least 5°C during glacials and persistence of wet conditions. Interglacial deposits contain thermophilic palms suggesting warm and wet climates. Hence, global temperature change can radically alter vegetation communities and biodiversity in this region.

  6. RENAL RETENTION OF LIPID MICROBUBBLES: A POTENTIAL MECHANISM FOR FLANK DISCOMFORT DURING ULTRASOUND CONTRAST ADMINISTRATION

    PubMed Central

    Liu, Ya Ni; Khangura, Jaspreet; Xie, Aris; Belcik, J. Todd; Qi, Yue; Davidson, Brian P.; Zhao, Yan; Kim, Sajeevani; Inaba, Yoichi; Lindner, Jonathan R.

    2013-01-01

    Background The etiology for flank pain sometimes experienced during administration of ultrasound contrast agents is unknown. We investigated whether microbubble ultrasound contrast agents are retained within the renal microcirculation which could lead to either flow disturbance or local release of vasoactive and pain mediators downstream from complement activation. Methods Retention of lipid-shelled microbubbles in the renal microcirculation of mice was assessed by confocal fluorescent microscopy and contrast-enhanced ultrasound (CEU) imaging with dose-escalating intravenous injection. Studies were performed with size-segregated microbubbles to investigate physical entrapment, after glycocalyx degradation, and in wild-type and C3-deficient mice to investigate complement-mediated retention. Urinary bradykinin was measured before and after microbubbles. Renal CEU in human subjects (n=13) was performed 7–10 min after completion of lipid microbubble administration. Results In both mice and humans, microbubble retention was detected in the renal cortex by persistent CEU signal enhancement. Microbubble retention in mice was linearly related to dose and occurred almost exclusively in cortical glomerular microvessels. Microbubble retention did not affect microsphere-derived renal blood flow. Microbubble retention was not influenced by glycocalyx degradation nor by microbubble size, thereby excluding lodging, but was reduced by 90% (p<0.01) in C3-deficient mice. Urinary bradykinin increased by 65% five minutes after microbubble injection. Conclusion Lipid-shelled microbubbles are retained in the renal cortex due to complement-mediated interactions with glomerular microvascular endothelium. Microbubble retention does not adversely affect renal perfusion but does generate complement-related intermediates that are known to mediate nociception and could be responsible for flank pain. PMID:24035699

  7. HSDP II Drill Core: Preliminary Rock Strength Results and Implications to Flank Stability, Mauna Kea Volcano

    NASA Astrophysics Data System (ADS)

    Thompson, N.; Watters, R. J.; Schiffman, P.

    2004-12-01

    Selected portions of the 3-km HSDP II core were tested to provide unconfined rock strength data from hyaloclastite alteration zones and pillow lavas. Though the drilling project was not originally intended for strength purpose, it is believed the core can provide unique rock strength insights into the flank stability of the Hawaiian Islands. The testing showed that very weak rock exists in the hyaloclastite abundant zones in the lower 2-km of the core with strength dependent on the degree of consolidation and type of alteration. Walton and Schiffman identified three zones of alteration, an upper incipient alteration zone (1080-1335m), a smectitic zone (1405-1573m) and a lower palagonitic zone from about 1573 m to the base of the core. These three zones were sampled and tested together with pillow lava horizons for comparison. Traditional cylindrical core was not available as a consequence of the entire core having been split lengthwise for archival purposes. Hence, point load strength testing was utilized which provides the unconfined compressive strength on irregular shaped samples. The lowest unconfined strengths were recorded from incipient alteration zones with a mean value of 9.5 MPa. Smectitic alteration zones yielded mean values of 16.4 MPa, with the highest measured alteration strengths from the palagonite zones with a mean value of 32.1 MPa. As anticipated, the highest strengths were from essentially unaltered lavas with a mean value of 173 MPa. Strength variations of between one to two orders of magnitude were identified in comparing the submarine hyaloclastite with the intercalated submarine lavas. The weakest zones within the hyaloclastites may provide horizons for assisting flank collapse by serving as potential thrust zones and landslide surfaces.

  8. Temperature Estimates for the Slow Slip Region on the Decollement Underlying the South Flank of Kilauea

    NASA Astrophysics Data System (ADS)

    Spinelli, G. A.

    2013-12-01

    Eleven slow slip events on the decollement beneath the south flank of Kilauea volcano have been documented geodetically since 1998 (Brooks et al., 2006; Montgomery-Brown et al., 2009; 2013). Tectonic tremor has not been observed associated with these events, in contrast to most slow slip events in subduction zones (Montgomery-Brown et al., 2013). The slow slip events occur on the decollement at ~8 km depth, and updip of the 'normal' earthquakes on the fault. Constraining temperatures on Kilauea's decollement allows comparisons between its slow slip events and those in subduction zones. Kilauea's slow slip events (~8 km depth) are significantly shallower than most subduction zone slow slip events. I estimate temperatures in a 2-D cross-section through the south flank of Kilauea by combining methods used in subduction zone thermal models (Wang et al., 1995) with elements of intrusion cooling models of volcanoes (e.g., Civetta et al., 2004). Temperatures in the cross-section are controlled by: 1) heat sources from friction on the decollement, radioactive decay, and volcanic activity, and 2) heat transport by conduction, advection of the volcanic pile to the southeast over the underlying oceanic lithosphere, and advective heat transport associated with groundwater flow. I examine the thermal effects of a range of effective friction coefficients on the fault from 0-0.2. I determine the potential effects of groundwater flow in the upper ~1-2 km of the onshore and near-offshore volcanic pile (e.g., Kauahikaua, 1993; Buttner and Huenges, 2003) on decollement temperatures. Finally, I examine how heat input from Kilauea volcano may result in higher decollement temperatures than at the same depth on plate boundary faults in subduction zones.

  9. Hazard Zonation at Mount Adams, Washington based on Edifice and Flank Stability Modeling

    NASA Astrophysics Data System (ADS)

    Bowman, S. D.; Watters, R. J.

    2002-12-01

    Collapse of the edifice [summit] and flanks of volcanoes is common worldwide, including the Cascade Range. Many of these failures have transformed into devastating debris flows that may travel hundreds of miles from their source area and have killed or injured hundreds of thousands of people. Despite the danger posed by these failures and the incipient debris flows, limited geotechnical data exists to quantify hazards from edifice and flank failure. Recent field work and investigation at Mount Adams, Washington focused on developing and refining a methodology for characterizing volcanic stability for geologic hazard analysis. This methodology may be applied at other volcanoes worldwide. Geotechnical data, including discontinuity and strength characteristics, Rock Mass Rating (RMR), point load index, direct shear, unconfined compression, and triaxial data were used to identify sectors based upon common geotechnical and geologic characteristics. The geotechnical information collected at Mount Adams adds to the limited data available worldwide and provides general strength ranges for use in initial stability studies at other volcanoes. In addition, a new point load index device was developed for use at high elevation and remote locations. Stability of each identified sector was analyzed using limit equilibrium methods, based upon collected geotechnical and geologic data. Three previous failures were backanalysed to determine strength characteristics at the time of failure. Areas of immediate instability include The Castle and the Avalanche Glacier Headwall. Backanalysis of the Trout Lake Mudflow, which formed the Avalanche Glacier Headwall, suggests a seismic or eruption triggering mechanism. Stability analysis resulted in a failure hazard map quantifying the hazard in each sector from slope failure. This hazard map in combination with other data may be used by agencies and organizations involved in land-use planning in the Mount Adams area to protect lives and

  10. Airborne sound insulation evaluation and flanking path prediction of coupled room

    NASA Astrophysics Data System (ADS)

    Tassia, R. D.; Asmoro, W. A.; Arifianto, D.

    2016-11-01

    One of the parameters to review the acoustic comfort is based on the value of the insulation partition in the classroom. The insulation value can be expressed by the sound transmission loss which converted into a single value as weighted sound reduction index (Rw, DnTw) and also have an additional sound correction factor in low frequency (C, Ctr) .In this study, the measurements were performed in two positions at each point using BSWA microphone and dodecahedron speaker as the sound source. The results of field measurements indicate the acoustic insulation values (DnT w + C) is 19.6 dB. It is noted that the partition wall not according to the standard which the DnTw + C> 51 dB. Hence the partition wall need to be redesign to improve acoustic insulation in the classroom. The design used gypsum board, plasterboard, cement board, and PVC as the replacement material. Based on the results, all the material is simulated in accordance with established standards. Best insulation is cement board with the insulation value is 69dB, the thickness of 12.5 mm on each side and the absorber material is 50 mm. Many factors lead to increase the value of acoustic insulation, such as the thickness of the panel, the addition of absorber material, density, and Poisson's ratio of a material. The prediction of flanking path can be estimated from noise reduction values at each measurement point in the class room. Based on data obtained, there is no significant change in noise reduction from each point so that the pathway of flanking is not affect the sound transmission in the classroom.

  11. Whale phylogeny and rapid radiation events revealed using novel retroposed elements and their flanking sequences

    PubMed Central

    2011-01-01

    Background A diversity of hypotheses have been proposed based on both morphological and molecular data to reveal phylogenetic relationships within the order Cetacea (dolphins, porpoises, and whales), and great progress has been made in the past two decades. However, there is still some controversy concerning relationships among certain cetacean taxa such as river dolphins and delphinoid species, which needs to be further addressed with more markers in an effort to address unresolved portions of the phylogeny. Results An analysis of additional SINE insertions and SINE-flanking sequences supported the monophyly of the order Cetacea as well as Odontocete, Delphinoidea (Delphinidae + Phocoenidae + Mondontidae), and Delphinidae. A sister relationship between Delphinidae and Phocoenidae + Mondontidae was supported, and members of classical river dolphins and the genera Tursiops and Stenella were found to be paraphyletic. Estimates of divergence times revealed rapid divergences of basal Odontocete lineages in the Oligocene and Early Miocene, and a recent rapid diversification of Delphinidae in the Middle-Late Miocene and Pliocene within a narrow time frame. Conclusions Several novel SINEs were found to differentiate Delphinidae from the other two families (Monodontidae and Phocoenidae), whereas the sister grouping of the latter two families with exclusion of Delphinidae was further revealed using the SINE-flanking sequences. Interestingly, some anomalous PCR amplification patterns of SINE insertions were detected, which can be explained as the result of potential ancestral SINE polymorphisms and incomplete lineage sorting. Although a few loci were potentially anomalous, this study demonstrated that the SINE-based approach is a powerful tool in phylogenetic studies. Identifying additional SINE elements that resolve the relationships in the superfamily Delphinoidea and family Delphinidae will be important steps forward in completely resolving cetacean phylogenetic

  12. [Sequence characterization of the 5'-Flanking region of the GHR gene in Tibetan sheep].

    PubMed

    Ma, Zhi-Jie; Wei, Ya-Ping; Zhong, Jin-Cheng; Chen, Zhi-Hua; Lu, Hong; Tong, Zi-Bao

    2007-08-01

    The 5'-Flanking sequence (including the P1 promotor and exon 1A) of the GHR gene in Oura-type Tibetan sheep (O. aries) was cloned by T-A method and sequenced (GenBank accession No. EF116490). Characterization and comparison of this sequence with mouflons (O. musimon), goat (C. hircus), cattle (B. taurus) and European bison (B. bonasus) orthologues were also conducted. Results showed that: 1) The 5'-flanking region contained many potential transcriptional factor binding sites such as those for C/EBPb, C/EBP, SP1, Cap, USF, HFH-2, HNF-3b, and Oct-1, which might have an important effect on transcription activation and regulation as well as tissue-specific expression. The rate of repetitive sequences was 2.55% and no SINEs, LINEs, LTR anti-transcription elements or DNA transposon elements were found, although one (TG)11 microsatellite was found. 2) In the P1 promotor region, sequence homology between the Tibetan sheep and mouflon, goat, cattle and European bison was 99.7%, 94.2%, 85.9% and 86.5%, respectively, while that for exon 1A was 99.0%, 97.0%, 92.7% and 94.6%, respectively. 3) The molecular phylogenetic tree among these species, constructed by the neighborhood joining method based on the sequences of no-coding region of the GHR genes, placed the two Bovinae species on one branch and the three Caprinae species on the other. Tibetan sheep and mouflons were joined first, followed by the goat, and then the Bovinae species, including the cattle and European bison. This result of phylogenetic clustering was not only identical to the taxonomy, but also to the phylogenetic clustering using the mitochondrial DNA of these species.

  13. The interaction of polyglutamine peptides with lipid membranes is regulated by flanking sequences associated with huntingtin.

    PubMed

    Burke, Kathleen A; Kauffman, Karlina J; Umbaugh, C Samuel; Frey, Shelli L; Legleiter, Justin

    2013-05-24

    Huntington disease (HD) is caused by an expanded polyglutamine (poly(Q)) repeat near the N terminus of the huntingtin (htt) protein. Expanded poly(Q) facilitates formation of htt aggregates, eventually leading to deposition of cytoplasmic and intranuclear inclusion bodies containing htt. Flanking sequences directly adjacent to the poly(Q) domain, such as the first 17 amino acids on the N terminus (Nt17) and the polyproline (poly(P)) domain on the C-terminal side of the poly(Q) domain, heavily influence aggregation. Additionally, htt interacts with a variety of membraneous structures within the cell, and Nt17 is implicated in lipid binding. To investigate the interaction between htt exon1 and lipid membranes, a combination of in situ atomic force microscopy, Langmuir trough techniques, and vesicle permeability assays were used to directly monitor the interaction of a variety of synthetic poly(Q) peptides with different combinations of flanking sequences (KK-Q35-KK, KK-Q35-P10-KK, Nt17-Q35-KK, and Nt17-Q35-P10-KK) on model membranes and surfaces. Each peptide aggregated on mica, predominately forming extended, fibrillar aggregates. In contrast, poly(Q) peptides that lacked the Nt17 domain did not appreciably aggregate on or insert into lipid membranes. Nt17 facilitated the interaction of peptides with lipid surfaces, whereas the poly(P) region enhanced this interaction. The aggregation of Nt17-Q35-P10-KK on the lipid bilayer closely resembled that of a htt exon1 construct containing 35 repeat glutamines. Collectively, this data suggests that the Nt17 domain plays a critical role in htt binding and aggregation on lipid membranes, and this lipid/htt interaction can be further modulated by the presence of the poly(P) domain.

  14. Volatile emissions from the crater and flank of Oldoinyo Lengai volcano, Tanzania

    USGS Publications Warehouse

    Koepenick, K.W.; Brantley, S.L.; Thompson, J.M.; Rowe, G.L.; Nyblade, A.A.; Moshy, C.

    1996-01-01

    As a comparison to airborne infrared (IR) flux measurements, ground-based sampling of fumarole and soil gases was used to characterize the quiescent degassing of CO2 from Oldoinyo Lengai volcano. Aerial and ground-based measurements are in good agreement: ???75% of the aerially measured CO2 flux at Lengai (0.05-0.06 ?? 1012 mol yr-1 or 6000-7200 tonnes CO2 d-1) can be attributed to seven large crater vents. In contrast to Etna and Vulcano Island, where 15-50% of the total CO2 flux emanates diffusely through the volcanic flanks, diffuse emissions were measured only within 500 m of the crater rim at Lengai, contributing < 2% of the total flux. The lack of extensive flank emissions may reflect the dimensions of the magma chamber and/or the lack of a shallow fluid flow system. Thermodynamic restoration of fumarole analyses shows that gases are the most CO2-rich and H2O-poor reported for any volcano, containing 64-74% CO2, 24-34% H2O, 0.88-1.0% H2, 0.1-0.4% CO and < 0.1% H2S, HCl, HF, and CH4. Volatile emissions of S, Cl, and F at Oldoiyno Lengai are estimated as 4.5, 1.5, and 1.0 ?? 107 mol yr-1, respectively. Accuracy of the airborne technique was also assessed by measuring the C emission rate from a coal-burning power plant. CO2 fluxes were measured within ??10% near the plant; however, poor resolution at increased distances caused an underestimation of the flux by a factor of 2. The relatively large CO2 fluxes measured for alkaline volcanoes such as Oldoinyo Lengai or Etna may indicate that midplate volcanoes represent a large, yet relatively unknown, natural source of CO2.

  15. Cloning of flanking sequence in transgenic plants by restriction site-anchored single-primer polymerase chain reaction.

    PubMed

    Ma, J; Wang, N N; Ren, S; Fu, Y P; Lu, S; Wang, Y P; Wang, P W

    2014-12-12

    Determining the insertion position of an exogenous gene in the target plant genome is one of the main issues in the transgenic plant field. This study introduced a simple, rapid, and accurate method to clone the flanking sequences of the transgenic bar gene as the anchoring gene in the transgenic maize genome using single-primer polymerase chain reaction (PCR). This method was based on the distribution of restriction sites in the maize genome and adopted the single-primer PCR method. Cloning the flanking sequences with the restriction site-anchored single-primer PCR simplified the experimental procedures by about 70% and reduced the experimental time by more than 80%. In conclusion, the restriction site-anchored single-primer PCR was a simple, rapid method to obtain the unknown flanking sequences in the transgenic plants.

  16. Biophysical properties of regions flanking the bHLH-Zip motif in the p22 Max protein.

    PubMed

    Pursglove, Sharon E; Fladvad, Malin; Bellanda, Massimo; Moshref, Ahmad; Henriksson, Marie; Carey, Jannette; Sunnerhagen, Maria

    2004-10-22

    The Max protein is the central dimerization partner in the Myc-Max-Mad network of transcriptional regulators, and a founding structural member of the family of basic-helix-loop-helix (bHLH)-leucine zipper (Zip) proteins. Biologically important regions flanking its bHLH-Zip motif have been disordered or absent in crystal structures. The present study shows that these regions are resistant to proteolysis in both the presence and absence of DNA, and that Max dimers containing both flanking regions have significantly higher helix content as measured by circular dichroism than that predicted from the crystal structures. Nuclear magnetic resonance measurements in the absence of DNA also support the inferred structural order. Deletion of both flanking regions is required to achieve maximal DNA affinity as measured by EMSA. Thus, the previously observed functionalities of these Max regions in DNA binding, phosphorylation, and apoptosis are suggested to be linked to structural properties.

  17. Flanking region variation of ForenSeq™ DNA Signature Prep Kit STR and SNP loci in Yavapai Native Americans.

    PubMed

    Wendt, Frank R; King, Jonathan L; Novroski, Nicole M M; Churchill, Jennifer D; Ng, Jillian; Oldt, Robert F; McCulloh, Kelly L; Weise, Jessica A; Smith, David Glenn; Kanthaswamy, Sreetharan; Budowle, Bruce

    2017-02-27

    Massively parallel sequencing (MPS) offers advantages over current capillary electrophoresis-based analysis of short tandem repeat (STR) loci for human identification testing. In particular STR repeat motif sequence information can be obtained, thereby increasing the discrimination power of some loci. While sequence variation within the repeat region is observed relatively frequently in some of the commonly used STRs, there is an additional degree of variation found in the flanking regions adjacent to the repeat motif. Repeat motif and flanking region sequence variation have been described for major population groups, however, not for more isolated populations. Flanking region sequence variation in STR and single nucleotide polymorphism (SNP) loci in the Yavapai population was analyzed using the ForenSeq™ DNA Signature Prep Kit and STRait Razor v2s. Seven and 14 autosomal STRs and identity-informative single nucleotide polymorphisms (iiSNPs), respectively, had some degree of flanking region variation. Three and four of these identity-informative loci, respectively, showed ≥5% increase in expected heterozygosity. The combined length- and sequence-based random match probabilities (RMPs) for 27 autosomal STRs were 6.11×10(-26) and 2.79×10(-29), respectively. When combined with 94 iiSNPs (a subset of which became microhaplotypes) the combined RMP was 5.49×10(-63). Analysis of length-based and sequence-based autosomal STRs in STRUCTURE indicated that the Yavapai are most similar to the Hispanic population. While producing minimal increase in X- and Y-STR discrimination potential, access to flanking region data enabled identification of one novel X-STR and three Y-STR alleles relative to previous reports. Five ancestry-informative SNPs (aiSNPs) and two phenotype-informative SNPs (piSNPs) exhibited notable flanking region variation.

  18. Comparison of flank margin cave development on San Salvador island, Bahamas, and Isla de Mona, Puerto Rico

    USGS Publications Warehouse

    Mylroie, J.; Carew, J.L.; Frank, E.F.; Larsen, Matthew C.; Boardman, M.

    1995-01-01

    Despite differences in rock age and geologic setting, both San Salvador and Isla do Mona show evidence of re-invasion of the flank margin caves by dissolutionally aggressive water following a vadose interval. The flank margin caves have very similar morphologies and characteristics, and the only major difference is attrutable to the larger lens size and the longer duration of stable lens position on Isla de Mona. The data indicate that dissolution occurs rapidly in these environments, and despite the development of large voids, the same geochemical environment can be re-established after an emergence episode. 

  19. K-Ar geochronology of basement rocks on the northern flank of the Huancabama deflection, Ecuador

    USGS Publications Warehouse

    Feininger, Tomas; Silberman, M.L.

    1982-01-01

    The Huancabamba deflection, a major Andean orocline located at the Ecuador-Peru border, constitutes an important geologic boundary on the Pacific coast of South America. Crust to the north of the deflection is oceanic and the basement is composed of basic igneous rocks of Cretaceous age, whereas crust to the south is continental and felsic rocks of Precambrian to Cretaceous age make up the basement. The northern flank of the Huancabamba Deflection in El Oro Province, Ecuador, is underlain by Precambrian polymetamorphic basic rocks of the Piedras Group; shale, siltstone, sandstone, and their metamorphosed equivalents in the Tahuin Group (in part of Devonian age); concordant syntectonic granitic rocks; quartz diorite and alaskite of the Maroabeli pluton; a protrusion of serpentinized harzburgite that contains a large inclusion of blueschist-facies metamorphic rocks, the Raspas Formation, and metamorphic rocks north of the La Palma fault. Biotite from gneiss of the Tahuin Group yields a Late Triassic K-Ar age (210 ? 8 m.y.). This is interpreted as an uplift age and is consistent with a regional metamorphism of Paleozoic age. A nearby sample from the Piedras Group that yielded a hornblende K-Ar age of 196 ? 8 m.y. was affected by the same metamorphic event. Biotite from quartz diorite of the mesozonal Maroabeli pluton yields a Late Triassic age (214 ? 6 m.y.) which is interpreted as an uplift age which may be only slightly younger than the age of magmatic crystallization. Emplacement of the pluton may postdate regional metamorphism of the Tahuin Group. Phengite from politic schist of the Raspas Formation yields an Early Cretaceous K-Ar age (132 ? 5 m.y.). This age is believed to date the isostatic rise of the encasing serpentinized harzburgite as movement along a subjacent subduction zone ceased, and it is synchronous with the age of the youngest lavas of a coeval volcanic arc in eastern Ecuador. A Late Cretaceous K-Ar age (74.4 ? 1.1 m.y.) from hornblende in

  20. Quaternary tectonic stability of the Bahamian archipelago: evidence from fossil coral reefs and flank margin caves

    NASA Astrophysics Data System (ADS)

    Carew, James L.; Mylroie, John E.

    Throughout the islands of the Bahamian archipelago fossil coral reefs are found from current sea level up to a maximum elevation of +4 m. {234U}/{230Th} radiometric dates obtained from in situ corals from these reefs, by both alpha-count and mass-spectrometric techniques, indicates that they were all formed during Oxygen Isotope Substage 5e (ca. 125,000 years ago). Those data are consistent with a maximum sea-level highstand of +6 m during Substage 5e, and either no vertical motion of the Bahamas, or possible isostatic subsidence of up to 2 m during the past 120,000 years. No older in situ fossil corals, or other subtidal deposits, have been found subaerially exposed anywhere in the Bahamas. That finding suggests that late Quaternary (at least the past 300,000 years) isostatic subsidence has occurred at a rate of 1-2 m per hundred thousand years, and/or no pre-5e highstands were above modern sea level. An independent corroboration of the conclusions drawn about sea level amplitude and tectonic stability of the Bahamas from the coral reef data is available from examination of abundant flank margin caves (horizontal, phreatic dissolution caves) found above modern sea level throughout the Bahamas. These horizontally extensive air-filled caves have dissolutional ceilings with elevations that are restricted to +1 to +7 m, which is consistent with formation at the margin of a thin freshwater lens elevated by a past +6 m sea-level highstand. The restricted cave elevations, and the lack of stalagmites in these caves that are older than 100,000 years, are also consistent with cave formation during Substage 5e, and possible subsequent isostatic subsidence of a few metres. The subsurface geology of the southeastern Bahamas contains a long-term record (millions of years) that has been attributed to past tectonic activity along the North American/Caribbean plate boundary. While that record suggests differential subsidence across the Bahamas in the Tertiary Period, the data from

  1. The third Volcano of La Réunion Island : new geochemical data from submarine flanks

    NASA Astrophysics Data System (ADS)

    Smietana, M. S.; Bachèlery, P. B.; Hémond, C. H.

    2009-04-01

    The existence of a third volcano on La Réunion Island, named Les Alizés, was presumed from gravity and magnetic data. This buried volcano is only known by the hypovolcanic complex encountered during a geothermal exploration drilling, beneath the eastern flank of Piton de la Fournaise. Negative magnetic anomalies offshore the north-eastern coast, suggest that the rocks belonging to Les Alizés volcano could be present in this area. In January 2008, a scientific survey onboard the R/V METEOR was carried out offshore La Réunion within the frame of the project ERODER2. During this campaign, submarine basalts were dredged on three rift zones of this intraplate volcanic island (NE and SE rift zones of Piton de la Fournaise volcano, and l'Etang Salé rift zone off the southern flank of Piton des Neiges volcano). The dredged rocks were analyzed for their major and trace element bulk compositions and compared with all available data for both Piton des Neiges and Piton de la Fournaise. Two groups of basaltic lava have been identified. Group 1, which encompasses samples from each rift zone, presents compositions similar to the subaerial basaltic rocks. Group 2, only found in the northern part of the NE rift zone, has higher K2O (1,28-1,44 wt.%), P2O5 (0,35-0,43 wt.%), and La/Sm (4,1-4,2) compared to subaerial and Group 1 lava [K20 (0,61-1,07 wt.%), P2O5 (0,17-0,28 wt.%), La/Sm (3,1-3,8)]. Such characteristics (high K2O, P2O5 and HREE and low SiO2) are exceptional for La Réunion lava and Group 2 composition does not correspond to any known rock from this island. This suggests a possible compositional change during the building of La Réunion edifice that can be indicative of variations in the partial melting processes. Is Les Alizés volcano there?

  2. Transcription factors, CncC and Maf, regulate expression of CYP6BQ genes responsible for deltamethrin resistance in Tribolium castaneum.

    PubMed

    Kalsi, Megha; Palli, Subba Reddy

    2015-10-01

    Insecticide resistance is a global problem that presents an ongoing challenge to control insects that destroy crops, trees and transmit diseases. Dramatic progress has been made during the last decade on identification of insecticide resistance-associated genes. In one of the most common resistance mechanisms, insects acquire resistance by increasing the levels of their detoxification enzymes especially the cytochrome P450 monooxygenases (P450's). Previous studies in our laboratory showed that the pyrethroid resistance in QTC279 strain of Tribolium castaneum is achieved through constitutive overexpression of the P450 gene CYP6BQ9 by 200-fold higher in the resistant strain as compared to that in the susceptible strain. RNAi-aided knockdown in the expression of probable genes that regulate P450 gene expression in QTC279 identified cap 'n' collar C (CncC) and muscle aponeurosis fibromatosis (Maf) family transcription factors as the key regulator of these genes, CncC and Maf regulate expression of multiple genes in the CYP6BQ cluster. Studies on the promoters of these genes using reporter assays identified binding sites that mediate CncC and Maf regulation of CYP6BQ gene expression.

  3. Rare case of a strangulated intercostal flank hernia following open nephrectomy: A case report and review of literature

    PubMed Central

    Akinduro, Oluwaseun O.; Jones, Frank; Turner, Jacquelyn; Cason, Frederick; Clark, Clarence

    2015-01-01

    Introduction Flank incisions may be associated with incisional flank hernias, which may progress to incarceration and strangulation. Compromised integrity of the abdominal and intercostal musculature due to previous surgery may be associated with herniation of abdominal contents into the intercostal space. There have been six previously reported cases of herniation into the intercostal space after a flank incision for a surgical procedure. This case highlights the clinical picture associated with an emergent strangulated hernia and highlights the critical steps in its management. Presentation of case We present a case of a 79-year-old adult man with multiple comorbidities presenting with a strangulated flank hernia secondary to an intercostal incision for a right-sided open nephrectomy. The strangulated hernia required emergent intervention including right-sided hemi-colectomy with ileostomy and mucous fistula. Discussion Abdominal incisional hernias are rare and therefore easily overlooked, but may result in significant morbidity or even death in the patient.. The diagnosis can be made with a thorough clinical examination and ultrasound or computed topographical investigation. Once a hernia has become incarcerated, emergent surgical management is necessary to avoid strangulation and small bowel obstruction. Conclusion Urgent diagnosis and treatment of this extremely rare hernia is paramount especially in the setting of strangulation. PMID:26629848

  4. Polymorphisms of Flanking Region of the ASB15 Gene and Their Associations with Performance Traits in Chicken.

    PubMed

    Wang, Y C; Han, R L; Li, Z J; Geng, J; Tian, Y D; Jiang, R R; Wu, J P; Kang, X T

    2017-01-02

    Research on the identity of genes and their relationship with traits of economic importance in chickens could assist in the selection of poultry. In this study, an F2 resource population of Gushi chickens crossed with Anka broilers was used to detect single-nucleotide polymorphisms (SNPs) in the flanking region of the ASB15 gene by DNA sequencing and polymerase chain reaction-restriction fragment length polymorphism (PCR-RFLP). One SNP of -1271 C>T in 5' flanking region of the chicken ASB15 gene and two SNPs of the 10618 A>G and 10716 G>A in 3' flanking region were identified. Furthermore, the 10618 A>G and 10716 G>A in 3' flanking region were in complete linkage. Association analysis results showed that -1271 C>T was not associated with performance traits, while the 10618 A>G and 10716 G>A were significantly associated with BW2, 4, 6, 8, 10, 12, SL12, CD8, CW4, 8, 12, BSL4, 8, 12, and SEW, EW, WW, BMW, LW, CW, SFT. Our results suggest that the ASB15 gene profoundly affects chicken performance traits.

  5. The occurrence of Mt Barca flank eruption in the evolution of the NW periphery of Etna volcano (Italy)

    NASA Astrophysics Data System (ADS)

    Branca, S.; Del Carlo, P.; Lo Castro, M. D.; de Beni, E.; Wijbrans, J.

    2009-01-01

    Geological surveys, tephrostratigraphic study, and 40Ar/39Ar age determinations have allowed us to chronologically constrain the geological evolution of the lower NW flank of Etna volcano and to reconstruct the eruptive style of the Mt Barca flank eruption. This peripheral sector of the Mt Etna edifice, corresponding to the upper Simeto valley, was invaded by the Ellittico volcano lava flows between 41 and 29 ka ago when the Mt Barca eruption occurred. The vent of this flank eruption is located at about 15 km away from the summit craters, close to the town of Bronte. The Mt Barca eruption was characterized by a vigorous explosive activity that produced pyroclastic deposits dispersed eastward and minor effusive activity with the emission of a 1.1-km-long lava flow. Explosive activity was characterized by a phreatomagmatic phase followed by a magmatic one. The geological setting of this peripheral sector of the volcano favors the interaction between the rising magma and the shallow groundwater hosted in the volcanic pile resting on the impermeable sedimentary basement. This process produced phreatomagmatic activity in the first phase of the eruption, forming a pyroclastic fall deposit made of high-density, poorly vesicular scoria lapilli and lithic clasts. Conversely, during the second phase, a typical strombolian fall deposit formed. In terms of hazard assessment, the possible occurrence of this type of highly explosive flank eruption, at lower elevation in the densely inhabited areas, increases the volcanic risk in the Etnean region and widens the already known hazard scenario.

  6. [Cloning of 5', 3' flanking sequence of ovine BLG and regulating the expression of GFP in mammary gland cell line].

    PubMed

    Liu, Ming-Jun; Li, Wen-Rong; Wu, Jian; Huang, Jun-Cheng; Guo, Zhi-Qin; Qu, Xin-Yong; Paul, Kroon

    2002-01-01

    5' and 3' flanking region of ovine BLG were amplified from sheep genomic DNA according to the published whole sequence of ovine BLG and cloned to pGEM-T vector correspondently. By partially sequencing, the sequences of BLG 5' and 3' flanking were the same as that of publication completely. The recombinant structure used to direct exogenous gene especially to express in mammary gland was constructed by joining 4.2 kb 5' flanking with 2.1 kb 3' flanking. In order to assess the efficiency of BLG regulatory elements, green fluorescent protein (GFP) gene as a reporter was fused with BLG construct and transfected the mammary epithelial cells (TD47). Through observation under UV microscope and detection by fluorometer, it is demonstrated that the GFP has been successfully expressed in TD47 cell line. By virtue of direct observation and quantitative analysis, the BLG-GFP construct can be served as a model for the quick assessment of mammary gland expression construct.

  7. Nonlinear sediment thickness increase on the western East Pacific Rise flank, 45°S

    NASA Astrophysics Data System (ADS)

    Horn, Michael; Uenzelmann-Neben, Gabriele

    2013-07-01

    Sediment thickness was evaluated on the western flank of the East Pacific Rise (EPR) at 45°S, based on high-resolution seismic data gathered during cruise 213/2 of R/V Sonne in 2011. Two zones with distinctly different sediment thickness were identified, separated by a transitional zone bordering a pseudo-fault. Sediment in the more distal zone 2 is almost twice as thick (~120 m) as in zone 1 close to the EPR. This is in contrast to the expected progressive sedimentary column thickening with seafloor age and distance from the spreading axis. The younger of two seismic units detected within the sedimentary column (EPR-2) occurs mainly in the distal zone on crust older than 9 Ma, whereas on younger crust it is present only in small isolated bodies. Both sedimentary units drape the basement. The drape is interpreted to represent particle settling from suspension and a generally low regional primary productivity. The spatial variation in sediment thickness cannot be explained by existing models, and other processes considered in the present case are (1) higher productivity in the western sector of the survey area, where thicker sediments were observed (zone 2), (2) the formation of sediment drifts near basement highs (`seamount effect'), due to flow of Lower Circumpolar Deep Water affecting sediment deposition, and (3) erosion and/or non-deposition of the younger EPR-2 unit, due to elevated bed shear stresses associated with eddies transferring kinetic energy to the seafloor

  8. Seismic evidence for blind thrusting of the northwestern flank of the Venezuelan Andes

    NASA Astrophysics Data System (ADS)

    de Toni, Bruno; Kellogg, James

    1993-12-01

    Surface geology and seismic and well data from the northwestern flank of the Venezuelan Andes indicate overthrusting of Andean basement rocks toward the adjacent Maracaibo Basin along a blind thrust fault. The frontal monocline is interpreted as the forelimb of a northwestward verging fault-related fold deformed over a crustal-scale ramp. The Andean block has been thrust 20 km to the northwest and uplifted 10 km on a ramp that dips about 20°-30° southeastward. The thrust fault ramps up through crystalline basement rocks to a decollement horizon within the shaly units of the Cretaceous Colon-Mito Juan formations. Backthrusts in the monocline produce a wedge geometry and reduce the amount of blind slip required on the decollement northwest of the Andes. The rigid Andean uplift was caused by northwest-southeast compressive tectonic forces related to the convergence of the Caribbean plate, the Panama volcanic arc, and northwestern South America. The thick (up to 6 km) molasse deposits accumulated in the foredeep basin indicate that the Venezuelan Andes started to rise as early as the early Miocene. However, a late Miocene intramolasse unconformity marks the beginning of the formation of the monocline and the greatest uplift. The crustal-scale fault-related fold model may explain structural features seen in other areas of basement-involved foreland deformation.

  9. Flanking magnitudes: dissociation between numerosity and numerical value in a selective attention task.

    PubMed

    Naparstek, Sharon; Safadi, Ziad; Lichtenstein-Vidne, Limor; Henik, Avishai

    2015-07-01

    The current research examined whether peripherally presented numerical information can affect the speed of number processing. In 2 experiments, participants were presented with a target matrix flanked by a distractor matrix and were asked to perform a comparative judgment (i.e., decide whether the target was larger or smaller than the reference 5). In Experiment 1, the target was symbolic (i.e., a single digit), and in Experiment 2, it was nonsymbolic (i.e., a random presentation of dots). In both experiments, flanker matrices had 2 dimensions-numerosity and numerical value-that were manipulated orthogonally to create stimulus congruent and stimulus incongruent conditions. Incongruent trials differed in the laterality between target and flanker (i.e., their location in relation to the reference 5). When responding to symbolic targets (Experiment 1), only the flanker's numerical value affected reaction times (RTs), whereas when responding to nonsymbolic targets (Experiment 2), only the flanker's numerosity affected RTs. In addition, the pattern of flanker interference differed between targets: For symbolic targets, laterality did not affect responses, whereas for nonsymbolic targets, laterality did affect responses. These results imply both symbolic and nonsymbolic magnitudes can be automatically activated; however, this activation is contingent upon their relevance to the task at hand. Implications of these results on the efficiency of the visual processing system and on numerical cognition are further discussed.

  10. Physical and chemical properties of submarine basaltic rocks from the submarine flanks of the Hawaiian Islands

    USGS Publications Warehouse

    Yokose, H.; Lipman, P.W.; Kanamatsu, T.

    2005-01-01

    To evaluate physical and chemical diversity in submarine basaltic rocks, approximately 280 deep submarine samples recovered by submersibles from the underwater flanks of the Hawaiian Islands were analyzed and compared. Based on observations from the submersibles and hand specimens, these samples were classified into three main occurrence types (lavas, coarse-grained volcaniclastic rocks, and fine-grained sediments), each with several subtypes. The whole-rock sulfur content and porosity in submarine basaltic rocks, recovered from depths greater than 2000 m, range from < 10 ppm and 2 vol.% to 2200 ppm and 47 vol.%, respectively. These wide variations cannot be due just to different ambient pressures at the collection depths, as inferred previously for submarine erupted lavas. The physical and chemical properties of the recovered samples, especially a combination of three whole-rock parameters (Fe-oxidation state, Sulfur content, and Porosity), are closely related to the occurrence type. The FSP triangular diagram is a valuable indicator of the source location of basaltic fragments deposited in deep submarine areas. This diagram can be applied to basaltic rocks such as clasts in debris-flow deposits, submarine-emplaced lava flows that may have crossed the shoreline, and slightly altered geological samples. ?? 2005 Elsevier B.V. All rights reserved.

  11. An INDEL polymorphism at the X-STR GATA172D05 flanking region.

    PubMed

    Rodrigues, Elzemar Martins Ribeiro; dos Santos, Ney Pereira Carneiro; dos Santos, Andrea Kely Campos Ribeiro; Marinho, Anderson Nonato; Zago, Marco Antonio; Gomes, Iva; Amorim, António; Gusmão, Leonor; dos Santos, Sidney Emanuel Batista

    2009-01-01

    A new polymorphic INDEL was detected at the X-STR GATA172D05 flanking region, which corresponds to an 18-bp deletion, 141 bp upstream the TAGA repeat motif. This INDEL was found to be polymorphic in different population samples from Native Americans, Africans, and Europeans as well as in an admixed population from the Amazonia (Belém). Gene diversities varied between 37.5% in Native Americans and 49.9% in Africans. Comparison between human and chimpanzee sequences showed that the ancestral state corresponds to the presence of two copies of 18 bp, detected in both species; and the mutated allele has lost one of these two copies. The simultaneous analysis of the short tandem repeat (STR) and INDEL variation showed an association between the INDEL ancestral allele with the shorter STR alleles. High diversities were found in all population groups when combining the information provided by the INDEL and STR variation. Gene diversities varied between 76.7% in Native Americans and 80.6% in both Portugal and Belém.

  12. Seismic detection of a low-velocity layer beneath the southeast flank of Mauna Loa, Hawaii

    SciTech Connect

    Thurber, C.H.; Li, Yingping ); Johnson, C.

    1989-07-01

    The authors have identified seismic phases reflected off the top and bottom of a low velocity layer (LVL) by analysis of seismograms from six small earthquakes in Hawaii. These events occurred almost directly beneath station AIN of the Hawaiian Volcano Observatory (HVO) seismic network, located within the Kaoiki seismic zone on the southeast flank of Mauna Loa. The polarity reversals of the first reflected phases provide clear evidence for the existence of a LVL beneath this station. The LVL is estimated to be at a depth of about 11.5 km, with a thickness of about 800 m. The estimated depth to the top of the LVL is consistent with the depth distribution of low-angle thrust faulting events from the aftershock sequence of the 1983 Kaoiki earthquake. Presumably, this zone is the marine sediment layer buried beneath the volcanic pile, along which the volcanic edifice may slip easily to cause large earthquakes. Mapping the interface between the volcanic pile and oceanic crust and thus determining the depth and thickness of the buried sediment layer is essential for understanding the tectonics of large earthquakes in Hawaii.

  13. Novel microbial assemblages inhabiting crustal fluids within mid-ocean ridge flank subsurface basalt.

    PubMed

    Jungbluth, Sean P; Bowers, Robert M; Lin, Huei-Ting; Cowen, James P; Rappé, Michael S

    2016-08-01

    Although little is known regarding microbial life within our planet's rock-hosted deep subseafloor biosphere, boreholes drilled through deep ocean sediment and into the underlying basaltic crust provide invaluable windows of access that have been used previously to document the presence of microorganisms within fluids percolating through the deep ocean crust. In this study, the analysis of 1.7 million small subunit ribosomal RNA genes amplified and sequenced from marine sediment, bottom seawater and basalt-hosted deep subseafloor fluids that span multiple years and locations on the Juan de Fuca Ridge flank was used to quantitatively delineate a subseafloor microbiome comprised of distinct bacteria and archaea. Hot, anoxic crustal fluids tapped by newly installed seafloor sampling observatories at boreholes U1362A and U1362B contained abundant bacterial lineages of phylogenetically unique Nitrospirae, Aminicenantes, Calescamantes and Chloroflexi. Although less abundant, the domain Archaea was dominated by unique, uncultivated lineages of marine benthic group E, the Terrestrial Hot Spring Crenarchaeotic Group, the Bathyarchaeota and relatives of cultivated, sulfate-reducing Archaeoglobi. Consistent with recent geochemical measurements and bioenergetic predictions, the potential importance of methane cycling and sulfate reduction were imprinted within the basalt-hosted deep subseafloor crustal fluid microbial community. This unique window of access to the deep ocean subsurface basement reveals a microbial landscape that exhibits previously undetected spatial heterogeneity.

  14. Mapping the fluid flow of the Mariana Mounds ridge flank hydrothermal system: Pore water chemical tracers

    SciTech Connect

    Wheat, C.G.; McDuff, R.E.

    1995-05-10

    The authors present a conceptual model of fluid circulation in a ridge flank hydrothermal system, the Mariana Mounds. The model is based on chemical data from pore waters extracted from piston cores and from push cores collected by deep-sea research vessel Alvin in small, meter-sized mounds situated on a local topographic high. These mounds are located within a region of heat flow exceeding that calculated from a conductive model and are zones of strong pore water upflow. The authors have interpreted the chemical data with time-dependent transport-reaction models to estimate pore water velocities. In the mounds themselves pore water velocities reach several meters per year to kilometers per year. Within about 100 m from these zones of focused upflow velocities decrease to several centimeters per year up to tens of centimeters per year. A large area of low heat flow surrounds these heat flow and topographic highs, with upwelling pore water velocities less than 2 cm/yr. In some nearby cores, downwelling of bottom seawater is evident but at speeds less than 2 cm/yr. Downwelling through the sediments appears to be a minor source of seawater recharge to the basaltic basement. The authors conclude that the principal source of seawater recharge to basement is where basement outcrops exist, most likely a scarpt about 2-4 km to the east and southeast of the study area. 71 refs., 14 figs., 3 tabs.

  15. The 5'-flanking regions of three pea legumin genes: comparison of the DNA sequences.

    PubMed Central

    Lycett, G W; Croy, R R; Shirsat, A H; Richards, D M; Boulter, D

    1985-01-01

    Approximately 1200 nucleotides of sequence data from the promoter and 5'-flanking regions of each of three pea (Pisum sativum L.) legumin genes (legA, legB and legC) are presented. The promoter regions of all three genes were found to be identical including the "TATA box", and "CAAT box', and sequences showing homology to the SV40 enhancers. The legA sequence begins to diverge from the others about 300bp from the start codon, whereas the other two genes remain identical for another 550bp. The regions of partial homology exhibit deletions or insertions and some short, comparatively well conserved sequences. The significance of these features is discussed in terms of evolutionary mechanisms and their possible functional roles. The legC gene contains a region that may potentially form either of two mutually exclusive stem-loop structures, one of which has a stem 42bp long, which suggests that it could be fairly stable. We suggest that a mechanism of switching between such alternative structures may play some role in gene control or may represent the insertion of a transposable element. PMID:2997721

  16. Proteasomal degradation of ubiquitinated Insig proteins is determined by serine residues flanking ubiquitinated lysines

    PubMed Central

    Lee, Joon No; Gong, Yi; Zhang, Xiangyu; Ye, Jin

    2006-01-01

    Insig-1 and Insig-2 are closely related proteins of the endoplasmic reticulum that play crucial roles in cholesterol homeostasis by inhibiting excessive cholesterol synthesis and uptake. In sterol-depleted cells Insig-1 is degraded at least 15 times more rapidly than Insig-2, owing to ubiquitination of Lys-156 and Lys-158 in Insig-1. In this study, we use domain-swapping methods to localize amino acid residues responsible for this differential degradation. In the case of Insig-2, Glu-214 stabilizes the protein by preventing ubiquitination. When Glu-214 is changed to alanine, Insig-2 becomes ubiquitinated, but it is still not degraded as rapidly as ubiquitinated Insig-1. The difference in the degradation rates is traced to two amino acids: Ser-149 in Insig-1 and Ser-106 in Insig-2. Ser-149, which lies NH2-terminal to the ubiquitination sites, accelerates the degradation of ubiquitinated Insig-1. Ser-106, which is COOH-terminal to the ubiquitination sites, retards the degradation of ubiquitinated Insig-2. The current studies indicate that the degradation of ubiquitinated Insigs is controlled by serine residues flanking the sites of ubiquitination. PMID:16549805

  17. Microbial Inventory of Deeply Buried Oceanic Crust from a Young Ridge Flank

    PubMed Central

    Jørgensen, Steffen L.; Zhao, Rui

    2016-01-01

    The deep marine biosphere has over the past decades been exposed as an immense habitat for microorganisms with wide-reaching implications for our understanding of life on Earth. Recent advances in knowledge concerning this biosphere have been achieved mainly through extensive microbial and geochemical studies of deep marine sediments. However, the oceanic crust buried beneath the sediments, is still largely unexplored with respect to even the most fundamental questions related to microbial life. Here, we present quantitative and qualitative data related to the microbial inventory from 33 deeply buried basaltic rocks collected at two different locations, penetrating 300 vertical meters into the upper oceanic crust on the west flank of the Mid-Atlantic spreading ridge. We use quantitative PCR and sequencing of 16S rRNA gene amplicons to estimate cell abundances and to profile the community structure. Our data suggest that the number of cells is relatively stable at ~104 per gram of rock irrespectively of sampling site and depth. Further, we show that Proteobacteria, especially Gammaproteobacteria dominate the microbial assemblage across all investigated samples, with Archaea, in general, represented by < 1% of the community. In addition, we show that the communities within the crust are distinct from the overlying sediment. However, many of their respective microbial inhabitants are shared between the two biomes, but with markedly different relative distributions. Our study provides fundamental information with respect to abundance, distribution, and identity of microorganisms in the upper oceanic crust. PMID:27303398

  18. Genetic analysis of the fragile-X mental retardation syndrome with two flanking polymorphic DNA markers

    SciTech Connect

    Oberle, I.; Heilig, R.; Moisan, J.P.; Kloepfer, C.; Mattei, M.G.; Mattei, J.F.; Boue, J.; Froster-Iskenius, U.; Jacobs, P.A.; Lathrop, G.M.; Lalouel, J.M.

    1986-02-01

    The fragile-X mental retardation syndrome, one of the most prevalent chromosome X-linked diseases (approx. = 1 of 2000 newborn males), is characterized by the presence in affected males and in a portion of carrier females of a fragile site at chromosome band Xq27. The authors have performed a linkage analysis in 16 families between the locus for the fragile-X syndrome, FRAXQ27, and two polymorphic DNA markers that correspond to the anonymous probe St14 and to the coagulation factor IX gene F9. The results indicate that the order of loci is centromere-F9-FRAXQ27-St14-Xqter. The estimate of the recombination fraction for the linkage F9-FRAXQ27 is 0.12 and 0.10 for FRAXQ27-St14. Recombination between St14 and F9 does not appear to be significantly different in normal and fragile-X families. The two flanking probes were used for diagnosis of the carrier state and for detection of transmission of the disease through phenotypically normal males. They should also allow first-trimester diagnosis with a reliability of about 98% in 40% of the families. Used in conjunction with the cytogenetic analysis, the segregation studies with both probes should improve the genetic counseling for the fragile-X syndrome and should be useful for the formal genetic analysis of this unique disease.

  19. Duplicative activation mechanisms of two trypanosome telomeric VSG genes with structurally simple 5' flanks.

    PubMed

    Matthews, K R; Shiels, P G; Graham, S V; Cowan, C; Barry, J D

    1990-12-25

    In the mammalian bloodstream, African trypanosomes express variant surface glycoprotein (VSG) genes from a family of long and complex telomeric expression sites. VSG switching generally occurs by the duplication of different VSG genes into these sites by gene conversion involving a series of 70 base pair (70bp) repeats in the 5' flank. In contrast, when VSG is first synthesised by trypanosomes in the tsetse fly at the metacyclic stage, a separate set of telomeric expression sites is activated. These latter telomeres appear not to act as recipients in gene conversion. We have found that the structure of two such expression sites is simple, with very short 70bp repeat regions and very little other sequence in common with bloodstream expression sites. However, the two telomeres readily act as donors in VSG gene conversion in the bloodstream and we show for one a consistent association of the conversion 5' end point with the short 70bp repeat region. These findings help explain why a very predictable set of VSGs is expressed in the tsetse fly and have implications for VSG gene conversion mechanisms.

  20. Petrology of parasitic and eccentric cones on the flanks and base of Somma-Vesuvius

    NASA Astrophysics Data System (ADS)

    Macdonald, Ray; Bagiński, Bogusław; Rolandi, Giuseppe; De Vivo, Benedetto; Kopczyńska, Anna

    2016-02-01

    Parasitic and eccentric cones on the flanks and at the base of Somma-Vesuvius potentially provide information on the plumbing system of the complex. We present geochemical data for minerals, glasses and rocks from the Pollena and Cercola cones. The rocks are phonotephrites and a basaltic trachyandesite. A volumetrically dominant type contains phenocrysts of olivine, clinopyroxene, leucite, plagioclase ± apatite ± Fe-Ti-oxides. A second type is phlogopite-phyric. Low magnesium-numbers (62-49) and Ni abundances (≤32 ppm) indicate that the primary magmas underwent crustal-level fractionation but the cores of olivine and clinopyroxene phenocrysts carry records of the parental magmas. Geochemical data indicate that the rocks form more than one magmatic lineage. Matrix glasses point to low-pressure fractionation trends towards decreasing melt silica-undersaturation. The phlogopite-phyric rocks were derived from more hydrous magmas than those lacking phlogopite phenocrysts, perhaps at higher pressures. Phenocryst assemblages are difficult to reconcile with published experimental work and it is likely that they are far from equilibrium assemblages. The cone magmas were probably derived from high levels within the main plumbing system via lateral transport.

  1. Splicing of COB intron 5 requires pairing between the internal guide sequence and both flanking exons.

    PubMed

    Partono, S; Lewin, A S

    1990-11-01

    Group I introns are characterized by a set of conserved sequence elements and secondary structures. Evidence supporting the pairing of certain of these sequences has come from the comparison of intron sequences and from the analysis of mutations that disrupt splicing by interfering with pairing. One of the structures proposed for all group I introns is an internal guide sequence that base pairs with the upstream and the downstream exons, bringing them into alignment for ligation. We made specific mutations in the internal guide sequence and the flanking exons of the fifth intron in the yeast mitochondrial gene for apocytochrome b (COB). Mutations that disrupted the pairing between the internal guide sequence and the upstream exon (the P1 pairing) blocked addition of guanosine to the 5' end of the intron during autocatalytic reactions and prevented formation of the full-length circular intron. In contrast, transcripts containing mutations that disrupted the pairing between the guide sequence and the downstream exon (the P10 helix) initiated splicing but failed to ligate exons. Compensatory mutations that restored helices of normal stability mitigated the effects of the original mutations. These data provide direct evidence for the importance of the base pairing between the internal guide sequence and the downstream exon in the splicing of a wild-type group I intron.

  2. The chicken vitellogenin II gene is flanked by a GATA factor-dependent estrogen response unit.

    PubMed

    Davis, D L; Burch, J B

    1996-08-01

    The chicken vitellogenin II (VTGII) gene is flanked by an imperfect estrogen response element (ERE) at -350 and a perfect ERE at -620. In the present study we show that this imperfect ERE lies within an estrogen response unit (ERU) that requires a GATA factor and the estrogen receptor to function as an estrogen-dependent enhancer. We infer that GATA-6 contributes to the estrogen-dependent and liver-specific regulation of the endogenous VTGII gene since this is the predominant GATA factor expressed in adult liver. Our analysis of the VTGII ERU revealed four salient points. First, this ERU is comprised of an ERE and a bank of functionally redundant GATA-binding sites. Second, the GATA-6 transactivation domain is necessary (and sufficient, when tethered near the ERE) to render this ERU functional. Third, ERU enhancer activity is dependent on GATA 6, regardless of whether the resident ERE is imperfect or perfect. Fourth, in contrast to a report that the estrogen receptor antagonizes the activity of another GATA factor (GATA-1), we show that these two factors can function in a synergistic manner within the context of the VTGII ERU.

  3. Influence of Transcontinental arch on Cretaceous listric-normal faulting, west flank, Denver basin

    SciTech Connect

    Davis, T.L.

    1983-08-01

    Seismic studies along the west flank of the Denver basin near Boulder and Greeley, Colorado illustrate the interrelationship between shallow listric-normal faulting in the Cretaceous and deeper basement-controlled faulting. Deeper fault systems, primarily associated with the Transcontinental arch, control the styles and causative mechanisms of listric-normal faulting that developed in the Cretaceous. Three major stratigraphic levels of listric-normal faulting occur in the Boulder-Greeley area. These tectonic sensitive intervals are present in the following Cretaceous formations: Laramie-Fox Hills-upper Pierre, middle Pierre Hygiene zone, and the Niobrara-Carlile-Greenhorn. Documentation of the listric-normal fault style reveals a Wattenberg high, a horst block or positive feature of the greater Transcontinental arch, was active in the east Boulder-Greeley area during Cretaceous time. Paleotectonic events associated with the Wattenberg high are traced through analysis of the listric-normal fault systems that occur in the area. These styles are important to recognize because of their stratigraphic and structural influence on Cretaceous petroleum reservoir systems in the Denver basin. Similar styles of listric-normal faulting occur in the Cretaceous in many Rocky Mountain foreland basins.

  4. Soft sediment deformation structures in the Maastrichtian Ajali Formation Western Flank of Anambra Basin, Southern Nigeria

    NASA Astrophysics Data System (ADS)

    Olabode, Solomon Ojo

    2014-01-01

    Soft sediment deformation structures were recognized in the Maastrichtian shallow marine wave to tide influenced regressive sediments of Ajali Formation in the western flank of Anambra basin, southern Nigerian. The soft sediment deformation structures were in association with cross bedded sands, clay and silt and show different morphological types. Two main types recognised are plastic deformations represented by different types of recumbent folds and injection structure represented by clastic dykes. Other structures in association with the plastic deformation structures include distorted convolute lamination, subsidence lobes, pillars, cusps and sand balls. These structures are interpreted to have been formed by liquefaction and fluidization mechanisms. The driving forces inferred include gravitational instabilities and hydraulic processes. Facies analysis, detailed morphologic study of the soft sediment deformation structures and previous tectonic history of the basin indicate that the main trigger agent for deformation is earthquake shock. The soft sediment deformation structures recognised in the western part of Anambra basin provide a continuous record of the tectonic processes that acted on the regressive Ajali Formation during the Maastrichtian.

  5. Novel microbial assemblages inhabiting crustal fluids within mid-ocean ridge flank subsurface basalt

    PubMed Central

    Jungbluth, Sean P; Bowers, Robert M; Lin, Huei-Ting; Cowen, James P; Rappé, Michael S

    2016-01-01

    Although little is known regarding microbial life within our planet's rock-hosted deep subseafloor biosphere, boreholes drilled through deep ocean sediment and into the underlying basaltic crust provide invaluable windows of access that have been used previously to document the presence of microorganisms within fluids percolating through the deep ocean crust. In this study, the analysis of 1.7 million small subunit ribosomal RNA genes amplified and sequenced from marine sediment, bottom seawater and basalt-hosted deep subseafloor fluids that span multiple years and locations on the Juan de Fuca Ridge flank was used to quantitatively delineate a subseafloor microbiome comprised of distinct bacteria and archaea. Hot, anoxic crustal fluids tapped by newly installed seafloor sampling observatories at boreholes U1362A and U1362B contained abundant bacterial lineages of phylogenetically unique Nitrospirae, Aminicenantes, Calescamantes and Chloroflexi. Although less abundant, the domain Archaea was dominated by unique, uncultivated lineages of marine benthic group E, the Terrestrial Hot Spring Crenarchaeotic Group, the Bathyarchaeota and relatives of cultivated, sulfate-reducing Archaeoglobi. Consistent with recent geochemical measurements and bioenergetic predictions, the potential importance of methane cycling and sulfate reduction were imprinted within the basalt-hosted deep subseafloor crustal fluid microbial community. This unique window of access to the deep ocean subsurface basement reveals a microbial landscape that exhibits previously undetected spatial heterogeneity. PMID:26872042

  6. Spatial Distribution of Rolled up Kelvin-Helmholtz Vortices at Earth's Dayside and Flank Magnetopause

    NASA Technical Reports Server (NTRS)

    Taylor, M. G. G. T.; Hasegawa, H.; Lavraud, B.; Phan, T.; Escoubet, C. P.; Dunlop, M. W.; Bogdanova, Y. V.; Borg, A. L.; Volwerk, M.; Berchem, J.; Constantinescu, O. D.; Eastwood, J. P.; Masson, A.; Laakso, H.; Soucek, J.; Fazakerley, A. N.; Frey, H. U.; Panov, E. V.; Shen, C.; Shi, J. K.; Sibeck, D. G.; Pu, Z. Y.; Wang, J.; Wild, J. A.

    2012-01-01

    The Kelvin-Helmholtz Instability (KHI) can drive waves at the magnetopause. These waves can grow to form rolled-up vortices and facilitate transfer of plasma into the magnetosphere. To investigate the persistence and frequency of such waves at the magnetopause we have carried out a survey of all Double Star 1 magnetopause crossings, using a combination of ion and magnetic field measurements. Using criteria originally used in a Geotail study made by Hasegawa et al. (2006) (forthwith referred to as H2006), 17 candidate events were identified from the entire TC-1 mission (covering 623 orbits where the magnetopause was sampled), a majority of which were on the dayside of the terminator. The relationship between density and shear velocity was then investigated, to identify the predicted signature of a rolled up vortex from H2006 and all 17 events exhibited some level of rolled up behavior. The location of the events had a clear dawn-dusk asymmetry, with 12 (71 %) on the post noon, dusk flank suggesting preferential growth in this region.

  7. Direct Observations of the Antarctic Circumpolar Current transport on the northern flank of the Kerguelen Plateau

    NASA Astrophysics Data System (ADS)

    Damerell, Gillian; Heywood, Karen; Stevens, David

    2013-04-01

    The standing meander in the Antarctic Circumpolar Current found on the northern flank of the Kerguelen Plateau was investigated during the SOFine (Southern Ocean Finestructure) cruise in November-December 2008. An 18-year time series of surface geostrophic currents from satellite altimetry shows that the meander as observed during this survey is typical of the region. Hydrographic stations were occupied between 65-75°E, 43-48°S on the shelf (~200 m depth) and slope into the deep ocean to the north of Kerguelen (~4700 m), providing the most detailed survey of this region to date. Geostrophic shears are referenced to lowered acoustic Doppler current profiler velocities to give the first estimate of the total volume transport in this region, and the transport budget is closed around the survey box. The Subtropical Front, Subantarctic Front and a northern branch of the Polar Front together have an associated transport of 174 ± 22 Sv eastward. While 174 Sv is large compared with typical Drake Passage transports, it is reconciled with other estimates of the total transport with the additional 15 Sv of the Indonesian Throughflow. Baroclinic transport referenced to the deepest common level between station pairs is 119 Sv, consistent with other estimates of the baroclinic transport in this area. At this longitude the fronts of the Antarctic Circumpolar Current are exceptionally close together. We discuss the exchange of properties across the fronts.

  8. Direct observations of the Antarctic circumpolar current transport on the northern flank of the Kerguelen Plateau

    NASA Astrophysics Data System (ADS)

    Damerell, G. M.; Heywood, K. J.; Stevens, D. P.

    2013-03-01

    standing meander in the Antarctic Circumpolar Current (ACC) found on the northern flank of the Kerguelen Plateau was investigated during the Southern Ocean Finestructure cruise in November-December 2008. An 18 year time series of surface geostrophic currents from satellite altimetry shows that the meander as observed during this survey is typical of the region. Hydrographic stations were occupied between 65-75°E and 43-48°S on the shelf (~200 m depth) and slope into the deep ocean to the north of Kerguelen (~4700 m), providing the most detailed survey of this region to date. Geostrophic shears are referenced to lowered acoustic Doppler current profiler velocities to give the first estimate of the total volume transport in this region, and the transport budget is closed around the survey box. The Subtropical Front, Subantarctic Front, and a northern branch of the Polar Front together have an associated transport of 174 ± 22 Sv eastward. While 174 Sv is large compared with typical Drake Passage transports, it is reconciled with other estimates of the total transport with the additional 15 Sv of the Indonesian Throughflow. Baroclinic transport referenced to the deepest common level between station pairs is 119 Sv, consistent with other estimates of the baroclinic transport in this area. At this longitude, the fronts of the ACC are exceptionally close together. We discuss the exchange of properties across the fronts.

  9. Discovery of a flank caldera and very young glacial activity at Hecates Tholus, Mars.

    PubMed

    Hauber, Ernst; van Gasselt, Stephan; Ivanov, Boris; Werner, Stephanie; Head, James W; Neukum, Gerhard; Jaumann, Ralf; Greeley, Ronald; Mitchell, Karl L; Muller, Peter

    2005-03-17

    The majority of volcanic products on Mars are thought to be mafic and effusive. Explosive eruptions of basic to ultrabasic chemistry are expected to be common, but evidence for them is rare and mostly confined to very old surface features. Here we present new image and topographic data from the High Resolution Stereo Camera that reveal previously unknown traces of an explosive eruption at 30 degrees N and 149 degrees E on the northwestern flank of the shield volcano Hecates Tholus. The eruption created a large, 10-km-diameter caldera approximately 350 million years ago. We interpret these observations to mean that large-scale explosive volcanism on Mars was not confined to the planet's early evolution. We also show that glacial deposits partly fill the caldera and an adjacent depression. Their age, derived from crater counts, is about 5 to 24 million years. Climate models predict that near-surface ice is not stable at mid-latitudes today, assuming a thermo-dynamic steady state. Therefore, the discovery of very young glacial features at Hecates Tholus suggests recent climate changes. We show that the absolute ages of these very recent glacial deposits correspond very well to a period of increased obliquity of the planet's rotational axis.

  10. Characterization and functional analysis of the 5' flanking region of Sparus aurata myostatin-1 gene.

    PubMed

    Funkenstein, Bruria; Balas, Viki; Rebhan, Yanai; Pliatner, Anna

    2009-05-01

    Myostatin (MSTN) is a member of the transforming growth factor-beta superfamily that functions as a negative regulator of skeletal muscle development and growth in mammals. Although several MSTN promoters were described in fish, no functional analysis was reported so far. Here, the 5' flanking region (1372 bp) of the MSTN-1 gene of the marine fish Sparus aurata (saMSTN-1) was cloned, sequenced and characterized. It contains two consensus sequences for TATA box (TATAA), a CAAT box, ten putative E-boxes known as binding sites to myogenic basic helix-loop-helix transcription factors (TFs) and two putative binding sites to TF Myocyte enhancing factor-2 (MEF2). In addition, it has several putative binding sites to TF Pit-1a and several response elements to nuclear receptors (GRE, ERE, PRE, ARE, TRE, RARE and PPARRE) and cAMP-response elements. Transcriptional activity of five genomic fragments (truncated at their upstream region) of 372, 941, 972, 1113 and 1355 bp was studied in vitro, using transient transfection in A204 cells. All constructs directed luciferase activity, with the highest activity obtained by the 1113 bp fragment. These experiments show that all five genomic fragments are functional MSTN promoters and differences in promoter activity might be due to presence of enhancers and/or repressor sequences, regulating MSTN promoter activity.

  11. Modeling ground deformation associated with the destructive earthquakes occurring on Mt. Etna's southeastern flank in 1984

    NASA Astrophysics Data System (ADS)

    Cannavò, Flavio; Gambino, Salvatore; Puglisi, Biagio; Velardita, Rosanna

    2016-11-01

    The Timpe Fault System is the source of very shallow but destructive earthquakes that affect several towns and villages on the eastern flank of Mt. Etna (Italy). In 1984, several seismic events, and specifically on 19 and 25 October, caused one fatality, 12 injuries and produced serious damage in the Zafferana and Acireale territories. This seismicity was mainly related to the activity of the Fiandaca Fault, one of the structures belonging to the Timpe Fault System. We inverted ground deformation data collected by a geodimeter trilateration network set up in 1977 at a low altitude along the eastern side of the volcano in order to define the Timpe Fault System faulting mechanisms linked to the seismicity in 1984. We have found that in the period May 1980-October 1984, the Fiandaca Fault was affected by a strike-slip and normal dip-slip of about 20.4 and 12.7 cm respectively. This result is kinematically consistent with field observations of the coseismic ground ruptures along the fault but it is notably large compared to displacements estimated by seismicity, then suggesting that most of the slip over the fault plane was aseismic. The results once again confirm how seismicity and its relation with ground ruptures and creep displacement represent a very high hazard to the several towns and villages situated along the Timpe Fault System.

  12. Palagonitization of Basalt Glass in the Flanks of Mid-Ocean Ridges: Implications for the Bioenergetics of Oceanic Intracrustal Ecosystems.

    PubMed

    Türke, Andreas; Nakamura, Kentaro; Bach, Wolfgang

    2015-10-01

    When basalt is exposed to oxygenated aqueous solutions, rims of palagonite form along fractures at the expense of glass. We employed electron microprobe and laser ablation inductively coupled plasma mass spectrometry (LA-ICP-MS) analyses of fresh glass and adjacent palagonite crusts to determine the geochemical changes involved in palagonite formation. Samples were retrieved from drill cores taken in the North Pond Area, located on the western flank of the Mid-Atlantic Ridge at 22°45'N and 46°05'W. We also analyzed whole rock powders to determine the overall crust-seawater exchange in a young ridge flank. Radioactive elements are enriched in palagonite relative to fresh glass, reaching concentrations where radiolytic production of molecular hydrogen (H2) may be a significant energy source. Based on these results, we hypothesize that microbial ecosystems in ridge flank habitats undergo a transition in the principal energy carrier, fueling carbon fixation from Fe oxidation in very young crust to H2 consumption in older crust. Unless the H2 is swept away by rapid fluid flow (i.e., in young flanks), it may easily accumulate to levels high enough to support chemolithoautotrophic life. In older flanks, crustal sealing and sediment accumulation have slowed down seawater circulation, and the significance of radiolytically produced H2 for catalytic energy supply is expected to increase greatly. Similar habitats on other planetary surfaces are theoretically possible, as accumulation of radiolytically produced hydrogen merely requires the presence of H2O molecules and a porous medium, from which the hydrogen is not lost.

  13. The role of viscous magma mush spreading in volcanic flank motion at Kīlauea Volcano, Hawai‘i

    USGS Publications Warehouse

    Plattner, C.; Amelung, F.; Baker, S.; Govers, R.; Poland, M.

    2013-01-01

    Multiple mechanisms have been suggested to explain seaward motion of the south flank of Kīlauea Volcano, Hawai‘i. The consistency of flank motion during both waxing and waning magmatic activity at Kīlauea suggests that a continuously acting force, like gravity body force, plays a substantial role. Using finite element models, we test whether gravity is the principal driver of long-term motion of Kīlauea's flank. We compare our model results to geodetic data from Global Positioning System and interferometric synthetic aperture radar during a time period with few magmatic and tectonic events (2000-2003), when deformation of Kīlauea was dominated by summit subsidence and seaward motion of the south flank. We find that gravity-only models can reproduce the horizontal surface velocities if we incorporate a regional décollement fault and a deep, low-viscosity magma mush zone. To obtain quasi steady state horizontal surface velocities that explain the long-term seaward motion of the flank, we find that an additional weak zone is needed, which is an extensional rift zone above the magma mush. The spreading rate in our model is mainly controlled by the magma mush viscosity, while its density plays a less significant role. We find that a viscosity of 2.5 × 1017–2.5 × 1019 Pa s for the magma mush provides an acceptable fit to the observed horizontal surface deformation. Using high magma mush viscosities, such as 2.5 × 1019 Pa s, the deformation rates remain more steady state over longer time scales. These models explain a significant amount of the observed subsidence at Kīlauea's summit. Some of the remaining subsidence is probably a result of magma withdrawal from subsurface reservoirs

  14. The role of viscous magma mush spreading in volcanic flank motion at Kīlauea Volcano, Hawai`i

    NASA Astrophysics Data System (ADS)

    Plattner, C.; Amelung, F.; Baker, S.; Govers, R.; Poland, M.

    2013-05-01

    Multiple mechanisms have been suggested to explain seaward motion of the south flank of Kīlauea Volcano, Hawai`i. The consistency of flank motion during both waxing and waning magmatic activity at Kīlauea suggests that a continuously acting force, like gravity body force, plays a substantial role. Using finite element models, we test whether gravity is the principal driver of long-term motion of Kīlauea's flank. We compare our model results to geodetic data from Global Positioning System and interferometric synthetic aperture radar during a time period with few magmatic and tectonic events (2000-2003), when deformation of Kīlauea was dominated by summit subsidence and seaward motion of the south flank. We find that gravity-only models can reproduce the horizontal surface velocities if we incorporate a regional décollement fault and a deep, low-viscosity magma mush zone. To obtain quasi steady state horizontal surface velocities that explain the long-term seaward motion of the flank, we find that an additional weak zone is needed, which is an extensional rift zone above the magma mush. The spreading rate in our model is mainly controlled by the magma mush viscosity, while its density plays a less significant role. We find that a viscosity of 2.5 × 1017-2.5 × 1019 Pa s for the magma mush provides an acceptable fit to the observed horizontal surface deformation. Using high magma mush viscosities, such as 2.5 × 1019 Pa s, the deformation rates remain more steady state over longer time scales. These models explain a significant amount of the observed subsidence at Kīlauea's summit. Some of the remaining subsidence is probably a result of magma withdrawal from subsurface reservoirs.

  15. The role of viscous magma mush spreading in volcanic flank motion at Kilauea Volcano, Hawai'i

    NASA Astrophysics Data System (ADS)

    Plattner, Christina; Amelung, Falk; Baker, Scott; Govers, Rob; Poland, Mike

    2014-05-01

    Multiple mechanisms have been suggested to explain seaward motion of the south flank of Kīlauea Volcano, Hawai'i. The consistency of flank motion during both waxing and waning magmatic activity at Kīlauea suggests that a continuously acting force, like gravity body force, plays a substantial role. Using finite element models, we test whether gravity is the principal driver of long-term motion of Kīlauea's flank. We compare our model results to geodetic data from Global Positioning System and interferometric synthetic aperture radar during a time period with few magmatic and tectonic events (2000-2003), when deformation of Kīlauea was dominated by summit subsidence and seaward motion of the south flank. We find that gravity-only models can reproduce the horizontal surface velocities if we incorporate a regional décollement fault and a deep, low-viscosity magma mush zone. To obtain quasi steady state horizontal surface velocities that explain the long-term seaward motion of the flank, we find that an additional weak zone is needed, which is an extensional rift zone above the magma mush. The spreading rate in our model is mainly controlled by the magma mush viscosity, while its density plays a less significant role.We find that a viscosity of 2.5 x 10^17 - 2.5 x 10^19 Pa s for the magma mush provides an acceptable fit to the observed horizontal surface deformation. Using high magma mush viscosities, such as 2.5 x 10^19 Pa s, the deformation rates remain more steady state over longer time scales. These models explain a significant amount of the observed subsidence at Kīlauea's summit. Some of the remaining subsidence is probably a result of magma withdrawal from subsurface reservoirs.

  16. Location and extent of recently active lava flows on the eastern flank of Idunn Mons on Venus

    NASA Astrophysics Data System (ADS)

    D'Incecco, Piero; Mueller, Nils; Helbert, Joern; D'Amore, Mario

    2016-10-01

    The eastern flank of Idunn Mons, Imdr Regio's single large volcano, was identified in VIRTIS data as one of the regions with relatively high values of thermal emissivity at 1 μm wavelength. Our study intends to identify location and extent of the sources of such anomalies, thus the lava flows responsible for the relatively high emissivity observed by VIRTIS over the eastern flank of Idunn Mons. We perform a simulation iterating the geologic mapping made over Magellan radar images of the same area with modeling of the blurring caused by the scattering of the 1 μm radiation in the atmosphere. At every iteration, we map the lava flow units in the surroundings of Idunn Mons and we assign each unit an assumed value of emissivity. We observed a good match between the mapped flows and the clusters resulting from the consistency of the mapped lava flows through the ISO clustering analysis. We tested eight different configurations, calculating the total RMS error compared to VIRTIS observations. The best-fit configuration is that where we assigned high values of emissivity to the flank lava flows. Results also show a correlation between the ISO clustering analysis and the best-fit configuration. We reconstructed the post-eruption stratigraphy of the eastern flank of Idunn Mons, displaying the three flank lava flows units likely responsible for the relatively high 1 μm emissivity anomalies observed by VIRTIS. The average microwave emissivity provides a further evidence of the basaltic composition of the mapped lava flows.

  17. Modeling of Principal Flank Wear: An Empirical Approach Combining the Effect of Tool, Environment and Workpiece Hardness

    NASA Astrophysics Data System (ADS)

    Mia, Mozammel; Al Bashir, Mahmood; Dhar, Nikhil Ranjan

    2016-10-01

    Hard turning is increasingly employed in machining, lately, to replace time-consuming conventional turning followed by grinding process. An excessive amount of tool wear in hard turning is one of the main hurdles to be overcome. Many researchers have developed tool wear model, but most of them developed it for a particular work-tool-environment combination. No aggregate model is developed that can be used to predict the amount of principal flank wear for specific machining time. An empirical model of principal flank wear (VB) has been developed for the different hardness of workpiece (HRC40, HRC48 and HRC56) while turning by coated carbide insert with different configurations (SNMM and SNMG) under both dry and high pressure coolant conditions. Unlike other developed model, this model includes the use of dummy variables along with the base empirical equation to entail the effect of any changes in the input conditions on the response. The base empirical equation for principal flank wear is formulated adopting the Exponential Associate Function using the experimental results. The coefficient of dummy variable reflects the shifting of the response from one set of machining condition to another set of machining condition which is determined by simple linear regression. The independent cutting parameters (speed, rate, depth of cut) are kept constant while formulating and analyzing this model. The developed model is validated with different sets of machining responses in turning hardened medium carbon steel by coated carbide inserts. For any particular set, the model can be used to predict the amount of principal flank wear for specific machining time. Since the predicted results exhibit good resemblance with experimental data and the average percentage error is <10 %, this model can be used to predict the principal flank wear for stated conditions.

  18. Distribution of contact loads over the flank-land of the cutter with a rounded cutting edge

    NASA Astrophysics Data System (ADS)

    Kozlov, V.; Gerasimov, A.; Kim, A.

    2016-04-01

    In this paper, contact conditions between a tool and a workpiece material for wear-simulating turning by a cutter with a sharp-cornered edge and with a rounded cutting edge are analysed. The results of the experimental study of specific contact load distribution over the artificial flank wear-land of the cutter in free orthogonal turning of the disk from titanium alloy (Ti6Al2Mo2Cr), ductile (63Cu) and brittle (57Cu1Al3Mn) brasses are described. Investigations were carried out by the method of ‘split cutter’ and by the method of the artificial flank-land of variable width. The experiments with a variable feed rate and a cutting speed show that in titanium alloy machining with a sharp-cornered cutting edge the highest normal contact load (σh max = 3400…2200 MPa) is observed immediately at the cutting edge, and the curve has a horizontal region with the length of 0.2… 0.6 mm. At a distance from the cutting edge, the value of specific normal contact load is dramatically reduced to 1100…500 MPa. The character of normal contact load for a rounded cutting edge is different -it is uniform, and its value is approximately 2 times smaller compared to machining with a sharp-cornered cutting edge. In author’s opinion it is connected with generation of a seizure zone in a chip formation region and explains the capacity of highly worn-out cutting tools for titanium alloys machining. The paper analyses the distribution of tangential contact loads over the flank land, which pattern differs considerably for machining with a sharp-cornered edge and with a rounded cutting edge. Abbreviation and symbols: m/s - meter per second (cutting speed v); mm/r - millimeter per revolution (feed rate f); MPa - mega Pascal (specific contact load as a stress σ or τ) hf - the width of the flank wear land (chamfer) of the cutting tool, flank wear land can be natural or artificial like the one in this paper [mm]; xh - distance from the cutting edge on the surface of the flank-land [mm

  19. ConservedPrimers 2.0: A high-throughput pipeline for comparative genome referenced intron-flanking PCR primer design and its application in wheat SNP discovery

    Technology Transfer Automated Retrieval System (TEKTRAN)

    In some genomic applications it is necessary to design large numbers of PCR primers in exons flanking one or several introns on the basis of orthologous gene sequences in related species. The primer pairs designed by this target gene approach are called "intron-flanking primers" or because they ar...

  20. Flank Deformation Recorded during Cotopaxís Awakening in 2015

    NASA Astrophysics Data System (ADS)

    Mothes, Patricia A.; Nocquet, Jean-Mathieu; Yépez, Marco A.; Jarrín, Paúl A.; Ruiz, Mario C.; Gaunt, Elizabeth

    2016-04-01

    Cotopaxi, a large glacier-topped stratocone in the Ecuadorian Andes begin to display anomalous seismic activity in April, 2015 when the IGEPŃs 15 station seismic network registered an increase in long period seismic events which were located 3-12 km below the crater. Several weeks later a distinct inflationary pattern was observed at the VC1 tilt station, 6 km NE of the crater, where we recorded a steady ascent of 150 urads (daily rate 3.2 urads) through 01 June. The tilt rate tended to slow and displayed a start & stop tilt pattern through 01 August, when a strong positive trend again resumed. Subsequently, a strong positive tilt pattern was predominante and briefly stalled after the occurrence of 5 small explosions/strong emissions on 14 August, 2015. About September 1st and prior to the onset of a high-energy VT seismic swarm, a rapid onset of strong positive tilt is observed. Subsequently, even though 30-100 VT events were registered daily, the tilt pattern leveled off in November to December, presumably because the events were with magnitudes <1 and that the magma supply was waning? Five other tilt stations on the volcano are much less sensitive than the VC1 station and this probably reflects the ideal coupling of the VC1 tiltmeter to a thick lava flow, which descends from the summit. The seven station GPS network displayed a strong displacement to the NW-SW for the stations on the W-SW flanks and had accumulative horizontal changes of 1 cm with a maximum vertical displacement of 1 cm at stations on the S and E. The trends of stations on the NE flank, with their movement purely to the north and east are difficult to interpret, but may be related to a preferential movement upon an old avalanche scar surface and water lubrication. While the changes detected by GPS are small, they did increase through time and finally, like the tilt, leveled off in November, 2015. We believe that these pattern are the result of small batches of magma ascending up the conduit and

  1. Catastrophic flank collapses and slumping in Pico Island during the last 130 kyr (Pico-Faial ridge, Azores Triple Junction)

    NASA Astrophysics Data System (ADS)

    Costa, A. C. G.; Hildenbrand, A.; Marques, F. O.; Sibrant, A. L. R.; Santos de Campos, A.

    2015-09-01

    The Pico Island constitutes the easternmost sub-aerial domain of a steep WNW-ESE volcanic ridge, which has developed within the Nubia-Eurasia diffuse plate boundary (Azores Triple Junction). The island comprises three volcanic systems, from older to younger: the Topo Volcano, the Fissural System, and the Pico Stratovolcano. From a high-resolution Digital Elevation Model (10 m), and new bathymetric, stratigraphic, structural, and high-precision K-Ar data, we reconstruct the main successive stages of growth and partial destruction of the island over the last 200 kyr. We especially concentrate on the central sector of the island, which has recorded gradual movements through slumping and catastrophic flank collapses since ca. 130 kyr. The remmants of the Topo Volcano are partly exposed on Pico's SE flank, and are here dated between 186 ± 5 and 115 ± 4 ka. Topo was significantly destroyed by N- and S-directed large-scale flank collapses between ca. 125 and 70 ka. On Pico's N flank, collapse seems to have removed all the unstable material, but in the S the collapse structure is composite, including a major flank collapse and a remnant slump complex that is still active. A first episode of deformation occurred between ca. 125 and 115 ka along the master fault of the slump. Between ca. 115 and 69 ka, most of the unstable material was removed by a major flank collapse, leaving behind a still considerable volume of unstable material that comprises the active slump. This first collapse was catastrophic and generated a large debris deposit recognized on the high-resolution bathymetry, with a minimum run-out of ca. 17 km. The scar was partially filled by volcanic products erupted from volcanic cones developed within the slump depression, and possibly also from the early WNW-ESE Fissural System. Subsequent deformation in the slump area affected in part the filling units, leading to the individualization of secondary curved faults. Younger volcanic products have gradually

  2. Three-dimensional Superficial Liposculpture of the Hips, Flank, and Thighs

    PubMed Central

    Lazzeri, Davide; Grassetti, Luca; Silvestri, Alessandro; Trisliana Perdanasari, Aurelia; Han, Sheng; Torresetti, Matteo; di Benedetto, Giovanni; Castello, Manuel Francisco

    2015-01-01

    Background: In the last 3 decades, liposuction has become a mainstay of the plastic surgeon’s armamentarium, and the technique has evolved considerably. We retrospectively review all of the liposuction procedures that we performed over the past 20 years. Methods: The principles of superficial 3-dimensional liposuction with respect to preoperative, intraoperative, and postoperative management of patients scheduled to undergo liposuction of the hips, flanks, and thighs were described. Results: A total of 4000 patient charts were reviewed. The results indicated that 50 patients experienced a postsurgical seroma that was resolved after syringe aspirations. One patient developed a major mycobacterial infection that was resolved after antibiotic therapy. Twenty patients complained of minor asymmetries that were corrected 6 months later under local anesthesia; 18 patients suffered from minor skin irregularities, which improved after lipofilling. In 6 cases, transient hyperpigmentation (6–12 months) of the skin before the use of suction drainages in the removal of large adiposities in patients with light skin was experienced, and in 2 cases, transient paresthesia (8 and 10 months) was experienced. No skin necrosis, deep vein thrombosis, or death occurred. Conclusions: If performed correctly, 3-dimensional superficial liposuction of the trunk, hips, and thighs can yield very satisfying outcomes because of the excellent contour and the enhanced skin retraction provided by the thin cutaneous adipose flap. Three-dimensional liposuction is a reliable method with proven results. A careful application of the technique combined with accurate surgical planning, a thorough preoperative explanation of real expectations, and postoperative care is crucial. PMID:25674372

  3. Effects of topically applied antiandrogenic compounds on sebaceous glands of hamster ears and flank organs

    SciTech Connect

    Schroeder, H.G.Z.; Ziegler, M.; Nickisch, K.; Kaufmann, J.; el Etreby, M.F.

    1989-05-01

    Growth of sebaceous glands in the ears and flank organs of castrated male hamsters is dependent on androgen substitution. Taking this for granted, a study was done to compare the effects of topical antiandrogenic treatment in vivo on the morphology and size of sebaceous glands with the concomitant changes in in vitro metabolism of /sup 3/H-testosterone. The role of dihydrotestosterone in sebaceous gland stimulation was thereby investigated. Topical treatment was carried out with the androgen antagonist 17 alpha-propylmesterolone (PM), with 4-androsten-3-one-17 beta-carboxylic acid (17 beta-C), and 17 beta-N,N-diethylcarbamoyl-4-methyl-4-aza-5 alpha-androstan-3-one (4-MA), both described as specific 4-steroid-5 alpha-reductase inhibitors, and with progesterone (PRO), which is an androgen receptor antagonist with 5 alpha-reductase inhibiting properties. Regrowth of sebaceous glands after castration and substitution with testosterone propionate or dihydrotestosterone could be inhibited by topical PM and PRO. This occurred irrespective of the influence on testosterone metabolism and irrespective of the mode of substitution. 4-MA, on the other hand, while exhibiting strong 5 alpha-reductase inhibition in vitro, was ineffective in reducing sebaceous gland sizes in vivo. The compound 17 beta-C was ineffective in every respect. In no case were systemic antiandrogenic effects on prostates and seminal vesicles observed. Our results support the view that the DHT formation rate has no regulatory function for growth of sebaceous glands in hamsters and that PM and PRO counteract the androgenic stimulus by their competitive antagonistic binding to the androgen receptor, but not by their influence on testosterone metabolism.

  4. Temperature and Redox Effect on Mineral Colonization in Juan de Fuca Ridge Flank Subsurface Crustal Fluids.

    PubMed

    Baquiran, Jean-Paul M; Ramírez, Gustavo A; Haddad, Amanda G; Toner, Brandy M; Hulme, Samuel; Wheat, Charles G; Edwards, Katrina J; Orcutt, Beth N

    2016-01-01

    To examine microbe-mineral interactions in subsurface oceanic crust, we evaluated microbial colonization on crustal minerals that were incubated in borehole fluids for 1 year at the seafloor wellhead of a crustal borehole observatory (IODP Hole U1301A, Juan de Fuca Ridge flank) as compared to an experiment that was not exposed to subsurface crustal fluids (at nearby IODP Hole U1301B). In comparison to previous studies at these same sites, this approach allowed assessment of the effects of temperature, fluid chemistry, and/or mineralogy on colonization patterns of different mineral substrates, and an opportunity to verify the approach of deploying colonization experiments at an observatory wellhead at the seafloor instead of within the borehole. The Hole U1301B deployment did not have biofilm growth, based on microscopy and DNA extraction, thereby confirming the integrity of the colonization design against bottom seawater intrusion. In contrast, the Hole U1301A deployment supported biofilms dominated by Epsilonproteobacteria (43.5% of 370 16S rRNA gene clone sequences) and Gammaproteobacteria (29.3%). Sequence analysis revealed overlap in microbial communities between different minerals incubated at the Hole U1301A wellhead, indicating that mineralogy did not separate biofilm structure within the 1-year colonization experiment. Differences in the Hole U1301A wellhead biofilm community composition relative to previous studies from within the borehole using similar mineral substrates suggest that temperature and the diffusion of dissolved oxygen through plastic components influenced the mineral colonization experiments positioned at the wellhead. This highlights the capacity of low abundance crustal fluid taxa to rapidly establish communities on diverse mineral substrates under changing environmental conditions such as from temperature and oxygen.

  5. Integrated geophysical and hydrothermal models of flank degassing and fluid flow at Masaya Volcano, Nicaragua

    USGS Publications Warehouse

    Sanford, Ward E.; Pearson, S.C.P.; Kiyosugi, K.; Lehto, H.L.; Saballos, J.A.; Connor, C.B.

    2012-01-01

    We investigate geologic controls on circulation in the shallow hydrothermal system of Masaya volcano, Nicaragua, and their relationship to surface diffuse degassing. On a local scale (~250 m), relatively impermeable normal faults dipping at ~60° control the flowpath of water vapor and other gases in the vadose zone. These shallow normal faults are identified by modeling of a NE-SW trending magnetic anomaly of up to 2300 nT that corresponds to a topographic offset. Elevated SP and CO2 to the NW of the faults and an absence of CO2 to the SE suggest that these faults are barriers to flow. TOUGH2 numerical models of fluid circulation show enhanced flow through the footwalls of the faults, and corresponding increased mass flow and temperature at the surface (diffuse degassing zones). On a larger scale, TOUGH2 modeling suggests that groundwater convection may be occurring in a 3-4 km radial fracture zone transecting the entire flank of the volcano. Hot water rising uniformly into the base of the model at 1 x 10-5 kg/m2s results in convection that focuses heat and fluid and can explain the three distinct diffuse degassing zones distributed along the fracture. Our data and models suggest that the unusually active surface degassing zones at Masaya volcano can result purely from uniform heat and fluid flux at depth that is complicated by groundwater convection and permeability variations in the upper few km. Therefore isolating the effects of subsurface geology is vital when trying to interpret diffuse degassing in light of volcanic activity.

  6. Microbial diversity within basement fluids of the sediment-buried Juan de Fuca Ridge flank

    PubMed Central

    Jungbluth, Sean P; Grote, Jana; Lin, Huei-Ting; Cowen, James P; Rappé, Michael S

    2013-01-01

    Despite its immense size, logistical and methodological constraints have largely limited microbiological investigations of the subseafloor basement biosphere. In this study, a unique sampling system was used to collect fluids from the subseafloor basaltic crust via a Circulation Obviation Retrofit Kit (CORK) observatory at Integrated Ocean Drilling Program borehole 1301A, located at a depth of 2667 m in the Pacific Ocean on the eastern flank of the Juan de Fuca Ridge. Here, a fluid delivery line directly accesses a 3.5 million years old basalt-hosted basement aquifer, overlaid by 262 m of sediment, which serves as a barrier to direct exchange with bottom seawater. At an average of 1.2 × 104 cells ml−1, microorganisms in borehole fluids were nearly an order of magnitude less abundant than in surrounding bottom seawater. Ribosomal RNA genes were characterized from basement fluids, providing the first snapshots of microbial community structure using a high-integrity fluid delivery line. Interestingly, microbial communities retrieved from different CORKs (1026B and 1301A) nearly a decade apart shared major community members, consistent with hydrogeological connectivity. However, over three sampling years, the dominant gene clone lineage changed from relatives of Candidatus Desulforudis audaxviator within the bacterial phylum Firmicutes in 2008 to the Miscellaneous Crenarchaeotic Group in 2009 and a lineage within the JTB35 group of Gammaproteobacteria in 2010, and statistically significant variation in microbial community structure was observed. The enumeration of different phylogenetic groups of cells within borehole 1301A fluids supported our observation that the deep subsurface microbial community was temporally dynamic. PMID:22791235

  7. The phylogenetic utility and functional constraint of microRNA flanking sequences

    PubMed Central

    Kenny, Nathan J.; Sin, Yung Wa; Hayward, Alexander; Paps, Jordi; Chu, Ka Hou; Hui, Jerome H. L.

    2015-01-01

    MicroRNAs (miRNAs) have recently risen to prominence as novel factors responsible for post-transcriptional regulation of gene expression. miRNA genes have been posited as highly conserved in the clades in which they exist. Consequently, miRNAs have been used as rare genome change characters to estimate phylogeny by tracking their gain and loss. However, their short length (21–23 bp) has limited their perceived utility in sequenced-based phylogenetic inference. Here, using reference taxa with established phylogenetic relationships, we demonstrate that miRNA sequences are of high utility in quantitative, rather than in qualitative, phylogenetic analysis. The clear orthology among miRNA genes from different species makes it straightforward to identify and align these sequences from even fragmentary datasets. We also identify significant sequence conservation in the regions directly flanking miRNA genes, and show that this too is of utility in phylogenetic analysis, as well as highlighting conserved regions that will be of interest to other fields. Employing miRNA sequences from 12 sequenced drosophilid genomes, together with a Tribolium castaneum outgroup, we demonstrate that this approach is robust using Bayesian and maximum-likelihood methods. The utility of these characters is further demonstrated in the rhabditid nematodes and primates. As next-generation sequencing makes it more cost-effective to sequence genomes and small RNA libraries, this methodology provides an alternative data source for phylogenetic analysis. The approach allows rapid resolution of relationships between both closely related and rapidly evolving species, and provides an additional tool for investigation of relationships within the tree of life. PMID:25694624

  8. Satellite DNA sequences flank amplified DHFR domains in marker chromosomes of mouse fibrosarcoma cells.

    PubMed

    Riva, P; Orlando, S; Labella, T; Larizza, L

    1994-01-01

    This study centers on marker chromosomes carrying expanded chromosomal regions which were observed in two independent derivatives of the AA12 murine fibrosarcoma line, the 10(-3) M MTX-res H2 and the 5 x 10(-7) M MTX-res E. Previous characterization of the marker chromosomes of MTX-res variants showed their common derivation from a marker chromosome (m) of the parental line, endowed with two interstitial C-bands. Cytogenetic evidence pointed to one C-band of m as the site involved in the chromosomal rearrangements leading to the HSR/ASR chromosomes. ISH of a 3H-labeled satellite DNA probe allowed satellite sequences flanking the HSR/ASR in the marker chromosomes, where the C-band was no longer visible, to be detected. FISH experiments using biotinylated DHFR and satellite DNA probes showed that the respective target sequences are contiguous in new marker chromosomes. They also allowed inter- and intrachromosomal rearrangements to be seen at DHFR amplicons and satellite sequences. Double-color FISH using digoxygenated satellite DNA and biotinylated pDHFR7 showed that in a marker chromosome from the H2 cell line the two target sequences are not only adjacent, but closer than 3 Mb, as indicated by overlapping of the different fluorescence signals given by the two probes. Another marker chromosome in the E variant was shown to display a mixed ladder structure consisting of a head-to-head tandem of irregularly-sized satellite DNA blocks, with two symmetrical interspersed DHFR clusters.

  9. Seismic Anisotropy Beneath the Eastern Flank of the Rio Grande Rift

    NASA Astrophysics Data System (ADS)

    Benton, N. W.; Pulliam, J.

    2015-12-01

    Shear wave splitting was measured across the eastern flank of the Rio Grande Rift (RGR) to investigate mechanisms of upper mantle anisotropy. Earthquakes recorded at epicentral distances of 90°-130° from EarthScope Transportable Array (TA) and SIEDCAR (SC) broadband seismic stations were examined comprehensively, via the Matlab program "Splitlab", to determine whether SKS and SKKS phases indicated anisotropic properties. Splitlab allows waveforms to be rotated, filtered, and windowed interactively and splitting measurements are made on a user-specified waveform segment via three independent methods simultaneously. To improve signal-to-noise and improve reliability, we stacked the error surfaces that resulted from grid searches in the measurements for each station location. Fast polarization directions near the Rio Grande Rift tend to be sub-parallel to the RGR but then change to angles that are consistent with North America's average plate motion, to the east. The surface erosional depression of the Pecos Valley coincides with fast polarization directions that are aligned in a more northerly direction than their neighbors, whereas the topographic high to the east coincides with an easterly change of the fast axis.The area above a mantle high velocity anomaly discovered separately via seismic tomography which may indicate thickened lithosphere, corresponds to unusually large delay times and fast polarization directions that are more closely aligned to a north-south orientation. The area of southeastern New Mexico that falls between the mantle fast anomaly and the Great Plains craton displays dramatically smaller delay times, as well as changes in fast axis directions toward the northeast. Changes in fast axis directions may indicate flow around the mantle anomaly; small delay times could indicate vertical or attenuated flow.

  10. Microbial diversity within basement fluids of the sediment-buried Juan de Fuca Ridge flank.

    PubMed

    Jungbluth, Sean P; Grote, Jana; Lin, Huei-Ting; Cowen, James P; Rappé, Michael S

    2013-01-01

    Despite its immense size, logistical and methodological constraints have largely limited microbiological investigations of the subseafloor basement biosphere. In this study, a unique sampling system was used to collect fluids from the subseafloor basaltic crust via a Circulation Obviation Retrofit Kit (CORK) observatory at Integrated Ocean Drilling Program borehole 1301A, located at a depth of 2667 m in the Pacific Ocean on the eastern flank of the Juan de Fuca Ridge. Here, a fluid delivery line directly accesses a 3.5 million years old basalt-hosted basement aquifer, overlaid by 262 m of sediment, which serves as a barrier to direct exchange with bottom seawater. At an average of 1.2 × 10(4) cells ml(-1), microorganisms in borehole fluids were nearly an order of magnitude less abundant than in surrounding bottom seawater. Ribosomal RNA genes were characterized from basement fluids, providing the first snapshots of microbial community structure using a high-integrity fluid delivery line. Interestingly, microbial communities retrieved from different CORKs (1026B and 1301A) nearly a decade apart shared major community members, consistent with hydrogeological connectivity. However, over three sampling years, the dominant gene clone lineage changed from relatives of Candidatus Desulforudis audaxviator within the bacterial phylum Firmicutes in 2008 to the Miscellaneous Crenarchaeotic Group in 2009 and a lineage within the JTB35 group of Gammaproteobacteria in 2010, and statistically significant variation in microbial community structure was observed. The enumeration of different phylogenetic groups of cells within borehole 1301A fluids supported our observation that the deep subsurface microbial community was temporally dynamic.

  11. Temperature and Redox Effect on Mineral Colonization in Juan de Fuca Ridge Flank Subsurface Crustal Fluids

    PubMed Central

    Baquiran, Jean-Paul M.; Ramírez, Gustavo A.; Haddad, Amanda G.; Toner, Brandy M.; Hulme, Samuel; Wheat, Charles G.; Edwards, Katrina J.; Orcutt, Beth N.

    2016-01-01

    To examine microbe-mineral interactions in subsurface oceanic crust, we evaluated microbial colonization on crustal minerals that were incubated in borehole fluids for 1 year at the seafloor wellhead of a crustal borehole observatory (IODP Hole U1301A, Juan de Fuca Ridge flank) as compared to an experiment that was not exposed to subsurface crustal fluids (at nearby IODP Hole U1301B). In comparison to previous studies at these same sites, this approach allowed assessment of the effects of temperature, fluid chemistry, and/or mineralogy on colonization patterns of different mineral substrates, and an opportunity to verify the approach of deploying colonization experiments at an observatory wellhead at the seafloor instead of within the borehole. The Hole U1301B deployment did not have biofilm growth, based on microscopy and DNA extraction, thereby confirming the integrity of the colonization design against bottom seawater intrusion. In contrast, the Hole U1301A deployment supported biofilms dominated by Epsilonproteobacteria (43.5% of 370 16S rRNA gene clone sequences) and Gammaproteobacteria (29.3%). Sequence analysis revealed overlap in microbial communities between different minerals incubated at the Hole U1301A wellhead, indicating that mineralogy did not separate biofilm structure within the 1-year colonization experiment. Differences in the Hole U1301A wellhead biofilm community composition relative to previous studies from within the borehole using similar mineral substrates suggest that temperature and the diffusion of dissolved oxygen through plastic components influenced the mineral colonization experiments positioned at the wellhead. This highlights the capacity of low abundance crustal fluid taxa to rapidly establish communities on diverse mineral substrates under changing environmental conditions such as from temperature and oxygen. PMID:27064928

  12. Evaluation of the flanking nucleotide sequences of sarcomeric hypertrophic cardiomyopathy substitution mutations.

    PubMed

    Meurs, Kathryn M; Mealey, Katrina L

    2008-07-03

    Hypertrophic cardiomyopathy (HCM) is a familial myocardial disease with a prevalence of 1 in 500. More than 400 causative mutations have been identified in 13 sarcomeric and myofilament related genes, 350 of these are substitution mutations within eight sarcomeric genes. Within a population, examples of recurring identical disease causing mutations that appear to have arisen independently have been noted as well as those that appear to have been inherited from a common ancestor. The large number of novel HCM mutations could suggest a mechanism of increased mutability within the sarcomeric genes. The objective of this study was to evaluate the most commonly reported HCM genes, beta myosin heavy chain (MYH7), myosin binding protein C, troponin I, troponin T, cardiac regulatory myosin light chain, cardiac essential myosin light chain, alpha tropomyosin and cardiac alpha-actin for sequence patterns surrounding the substitution mutations that may suggest a mechanism of increased mutability. The mutations as well as the 10 flanking nucleotides were evaluated for frequency of di-, tri- and tetranucleotides containing the mutation as well as for the presence of certain tri- and tetranculeotide motifs. The most common substitutions were guanine (G) to adenine (A) and cytosine (C) to thymidine (T). The CG dinucleotide had a significantly higher relative mutability than any other dinucleotide (p<0.05). The relative mutability of each possible trinucleotide and tetranucleotide sequence containing the mutation was calculated; none were at a statistically higher frequency than the others. The large number of G to A and C to T mutations as well as the relative mutability of CG may suggest that deamination of methylated CpG is an important mechanism for mutation development in at least some of these cardiac genes.

  13. Flank Hernia Repair with Suture Anchor Mesh Fixation to the Iliac Crest.

    PubMed

    Mukherjee, Kaushik; Miller, Richard S

    2017-03-01

    Traumatic or postsurgical flank hernias are complex and prone to recurrence, particularly at the border of the iliac crest. We reviewed our experience using suture anchors drilled into the iliac crest to fixate the mesh to bone. Our study of 10 repairs in eight patients was Institutional Review Board exempt. We obtained demographics, body mass index, diabetes, methicillin-resistant Staphylococcus aureus (MRSA) history, smoking status, steroid use, number of prior repairs, defect size, mesh size, number of anchors, and recurrence and infection at follow-up. We performed Kaplan-Meier analysis using a composite of recurrence or infection. Three of eight (interquartile range, 37.5%) patients were male. Median age and body mass index were 47.5 years (31.0, 54.7) and 32.2 (29.0, 36.0), respectively. Three patients had prior repairs, one each with two, three, and five prior attempts at fixation. One of eight patients (12.5%) had a history of MRSA infection. One of eight patients (12.5%) had a history of intermittent steroid use for sarcoidosis. Defect size was 90 cm2 (62.2, 165) and mesh size was 155 cm2 (150, 232) with four anchors (4, 5.5). Procedural complications included 2/10 (20%) with recurrence and 1/10 (10%) with postoperative MRSA infection. Follow-up was 12 months (3.0, 25.0). Mean freedom from recurrence and mesh infection (Kaplan-Meier) was 43.5 months (95%confidence interval = 24.2, 62.8). In conclusion, our series is one of the largest in the literature involving the suture anchor technique. Despite a high-risk patient population due to trauma, obesity, and prior smoking and MRSA history, we achieved an acceptable recurrence rate. Further study may benefit from a randomized trial design.

  14. A new colorful species of Pristimantis (Anura: Craugastoridae) from the eastern flank of the Cordillera Central in Colombia .

    PubMed

    Rivera-Prieto, Diego A; Rivera-Correa, Mauricio; Daza, Juan M

    2014-12-22

    We describe a new species of Pristimantis from the humid forests on the eastern flank of the northern Cordillera Central in Colombia (6º 23' 19.3554" N, 75º 1' 24.0594" W; ca. 1150 m.a.s.l.). Pristimantis jaguensis sp. nov. is characterized by an extraordinary variation in color and is readily distinguished from congeneric species by lacking nuptial pads, discoidal fold and conical calcar tubercles; flanks and belly white to cream without blotches as well as iris yellow ocher to copper with thick brown reticulation and cream sclera. Molecular phylogenetic analyses recovered the new species in a clade with species mostly distributed in Ecuador. Our finding suggests that new taxa can still be discovered in the Middle Magdalena River valley of Colombia despite the extensive sampling this region has received during the last decades. 

  15. [Brood parasitism and egg mimicry on Brownish-flanked Bush Warbler (Cettia fortipes) by Lesser Cuckoo (Cuculus poliocephalus)].

    PubMed

    Yang, Can-Chao; Cai, Yan; Liang, Wei

    2010-10-01

    Nest fate of Brownish-flanked Bush Warbler (Cettia fortipes) was conducted in breeding seasons from 1999 to 2009 in Kuankuoshui Natural Reserve, Guizhou province. Predation rate, parasitism rate, hatching success, nesting success and reproductive success were surveyed and egg color was quantified using spectrophotometer. Principal component analysis, reflectance spectrum and Robinson Project were used to analyze the egg color of bush warbler and egg mimicry of Lesser Cuckoo (Cuculus poliocephalus) in parasitized nests. Our results indicated that the Brownish-flanked Bush Warbler suffered from high predation rate and relatively high parasitism rate of 49.26% and 9.18%, respectively. Reflectance analysis showed that the hue and chroma of Lesser Cuckoo eggs were highly mimetic but the egg brightness and ultraviolet reflectance were different from the bush warbler.

  16. Preliminary assessment of the state of CO2 soil degassing on the flanks of Gede volcano (West Java, Indonesia)

    NASA Astrophysics Data System (ADS)

    Kunrat, S. L.; Schwandner, F. M.

    2013-12-01

    Gede Volcano (West Java) is part of an andesitic stratovolcano complex consisting of Pangrango in the north-west and Gede in the south-east. The last recorded eruptive activity was a phreatic subvolcanian ash eruption in 1957. Current activity is characterized by episodic swarms at 2-4 km depth, and low-temperature (~160°C) crater degassing in two distinct summit crater fumarolic areas. Hot springs occur in the saddle between the Gede and Pangrango edifice, as well as on the NE flank base. The most recent eruptive events produced pyroclastic material, their flow deposits concentrate toward the NE. A collaborative effort between the Center for Volcanology and Geological Hazard Mitigation (CVGHM), Geological Agency and the Earth Observatory of Singapore (EOS) is since 2010 aimed at upgrading the geophysical and geochemical monitoring network at Gede Volcano. To support the monitoring instrumentation upgrades under way, surveys of soil CO2 degassing have been performed on the flanks of Gede, in circular and radial traverses.The goal was to establish a spatial distribution of flank CO2 fluxes, and to allow smart siting for continuous gas monitoring stations. Crater fluxes were not surveyed, as its low-temperature hydrothermal system is likely prone to large hydraulic changes in this tropical environment, resulting in variable permeability effects that might mask signals from deeper reservoir or conduit degassing. The high precipitation intensity in the mountains of tropical Java pose challenges to this method, since soil gas permeability is largely controlled by soil moisture content. Simultaneous soil moisture measurements were undertaken. The soil CO2 surveys were carried out using a LI-8100A campaign flux chamber instrument (LICOR Biosciences, Lincoln, Nebraska). This instrument has a very precise and highly stable sensor and an atmospheric pressure equilibrator, making it highly sensitive to low fluxes. It is the far superior choice for higher precision low

  17. Ups and downs on spreading flanks of ocean-island volcanoes: evidence from Mauna Loa and Kīlauea

    USGS Publications Warehouse

    Lipman, Peter W.; Eakins, Barry W.; Yokose, Hisayoshi

    2003-01-01

    Submarine-flank deposits of Hawaiian volcanoes are widely recognized to have formed largely by gravitationally driven volcano spreading and associated landsliding. Observations from submersibles show that prominent benches at middepths on flanks of Mauna Loa and Kilauea consist of volcaniclastic debris derived by landsliding from nearby shallow submarine and subaerial flanks of the same edifice. Massive slide breccias from the mature subaerial tholeiitic shield of Mauna Loa underlie the frontal scarp of its South Kona bench. In contrast, coarse volcaniclastic sediments derived largely from submarine-erupted preshield alkalic and transitional basalts of ancestral Kilauea underlie its Hilina bench. Both midslope benches record the same general processes of slope failure, followed by modest compression during continued volcano spreading, even though they record development during different stages of edifice growth. The dive results suggest that volcaniclastic rocks at the north end of the Kona bench, interpreted by others as distal sediments from older volcanoes that were offscraped, uplifted, and accreted to the island by far-traveled thrusts, alternatively are a largely coherent stratigraphic assemblage deposited in a basin behind the South Kona bench.

  18. Compartmentalization of the Coso East Flank geothermal field imaged by 3-D full-tensor MT inversion

    NASA Astrophysics Data System (ADS)

    Lindsey, Nathaniel J.; Kaven, Joern Ole; Davatzes, Nicholas; Newman, Gregory A.

    2017-02-01

    Previous magnetotelluric (MT) studies of the high-temperature Coso geothermal system in California identified a subvertical feature of low resistivity (2-5 Ohm m) and appreciable lateral extent (>1 km) in the producing zone of the East Flank field. However, these models could not reproduce gross 3-D effects in the recorded data. We perform 3-D full-tensor inversion and retrieve a resistivity model that out-performs previous 2-D and 3-D off-diagonal models in terms of its fit to the complete 3-D MT data set as well as the degree of modelling bias. Inclusion of secondary Zxx and Zyy data components leads to a robust east-dip (60†) to the previously identified conductive East Flank reservoir feature, which correlates strongly with recently mapped surface faults, downhole well temperatures, 3-D seismic reflection data, and local microseismicity. We perform synthetic forward modelling to test the best-fit dip of this conductor using the response at a nearby MT station. We interpret the dipping conductor as a fractured and fluidized compartment, which is structurally controlled by an unmapped blind East Flank fault zone.

  19. Compartmentalization of the Coso East Flank Geothermal Field Imaged by 3-D Full-tensor MT Inversion

    NASA Astrophysics Data System (ADS)

    Lindsey, Nathaniel J.; Kaven, Joern Ole; Davatzes, Nicholas; Newman, Gregory A.

    2016-11-01

    Previous magnetotelluric (MT) studies of the high-temperature Coso geothermal system in California identified a subvertical feature of low resistivity (2 - 5 Ohm-m) and appreciable lateral extent (>1 km) in the producing zone of the East Flank field. However, these models could not reproduce gross 3-D effects in the recorded data. We perform 3-D full-tensor inversion and retrieve a resistivity model that out-performs previous 2-D and 3-D off-diagonal models in terms of its fit to the complete 3-D MT dataset as well as the degree of modeling bias. Inclusion of secondary Zxx and Zyy data components leads to a robust east-dip (60o) to the previously identified conductive East Flank reservoir feature, which correlates strongly with recently mapped surface faults, downhole well temperatures, 3-D seismic reflection data, and local microseismicity. We perform synthetic forward modeling to test the best fit dip of this conductor using the response at a nearby MT station. We interpret the dipping conductor as a fractured and fluidized compartment, which is structurally-controlled by an unmapped blind East Flank fault zone.

  20. Control of the structural landscape and neuronal proteotoxicity of mutant Huntingtin by domains flanking the polyQ tract

    PubMed Central

    Shen, Koning; Calamini, Barbara; Fauerbach, Jonathan A; Ma, Boxue; Shahmoradian, Sarah H; Serrano Lachapel, Ivana L; Chiu, Wah; Lo, Donald C; Frydman, Judith

    2016-01-01

    Many neurodegenerative diseases are linked to amyloid aggregation. In Huntington’s disease (HD), neurotoxicity correlates with an increased aggregation propensity of a polyglutamine (polyQ) expansion in exon 1 of mutant huntingtin protein (mHtt). Here we establish how the domains flanking the polyQ tract shape the mHtt conformational landscape in vitro and in neurons. In vitro, the flanking domains have opposing effects on the conformation and stabilities of oligomers and amyloid fibrils. The N-terminal N17 promotes amyloid fibril formation, while the C-terminal Proline Rich Domain destabilizes fibrils and enhances oligomer formation. However, in neurons both domains act synergistically to engage protective chaperone and degradation pathways promoting mHtt proteostasis. Surprisingly, when proteotoxicity was assessed in rat corticostriatal brain slices, either flanking region alone sufficed to generate a neurotoxic conformation, while the polyQ tract alone exhibited minimal toxicity. Linking mHtt structural properties to its neuronal proteostasis should inform new strategies for neuroprotection in polyQ-expansion diseases. DOI: http://dx.doi.org/10.7554/eLife.18065.001 PMID:27751235

  1. Active faults on the eastern flank of Etna volcano (Italy) monitored through soil radon measurements

    NASA Astrophysics Data System (ADS)

    Neri, M.; Giammanco, S.; Ferrera, E.; Patanè, G.; Zanon, V.

    2012-04-01

    This study concerns measurements of radon and thoron emissions from soil carried out in 2004 on the unstable eastern flank of Mt. Etna, in a zone characterized by the presence of numerous seismogenic and aseismic faults. The statistical treatment of the geochemical data allowed recognizing anomaly thresholds for both parameters and producing distribution maps that highlighted a significant spatial correlation between soil gas anomalies and tectonic lineaments. In particular, the highest anomalies were found at the intersection between WNW-ESE and NW-SE -running faults. The seismic activity occurring in and around the study area during 2004 was analyzed, producing maps of hypocentral depth and released seismic energy. These maps revealed a progressive deepening of hypocenters from NW to SE, with the exception of a narrow zone in the central part of the area, with a roughly WNW-ESE direction. Also, the highest values of seismic energy were released during events in the southern and northwestern sectors of the area. Both radon and thoron anomalies were located in areas affected by relatively deep (5-10 km depth) seismic activity, while less evident correlation was found between soil gas anomalies and the released seismic energy. This study confirms that mapping the distribution of radon and thoron in soil gas can reveal hidden faults buried by recent soil cover or faults that are not clearly visible at the surface. The correlation between soil gas data and earthquake depth and intensity can give some hints on the source of gas and/or on fault dynamics. Lastly, an important spin-off of this study is the recognition of some areas where radon activity was so high (>50000 Bq/m3) that it may represent a potential hazard to the local population. In fact, radon is the leading cause of lung cancer after cigarette smoke for long exposures and, due to its molecular weight, it accumulates in underground rooms or in low ground, particularly where air circulation is low or absent

  2. Adhesive and Migratory Effects of Phosphophoryn Are Modulated by Flanking Peptides of the Integrin Binding Motif

    PubMed Central

    Suzuki, Shigeki; Kobuke, Seiji; Haruyama, Naoto; Hoshino, Hiroaki; Kulkarni, Ashok B.; Nishimura, Fusanori

    2014-01-01

    Phosphophoryn (PP) is generated from the proteolytic cleavage of dentin sialophosphoprotein (DSPP). Gene duplications in the ancestor dentin matrix protein-1 (DMP-1) genomic sequence created the DSPP gene in toothed animals. PP and DMP-1 are phosphorylated extracellular matrix proteins that belong to the family of small integrin-binding ligand N-linked glycoproteins (SIBLINGs). Many SIBLING members have been shown to evoke various cell responses through the integrin-binding Arg-Gly-Asp (RGD) domain; however, the RGD-dependent function of PP is not yet fully understood. We demonstrated that recombinant PP did not exhibit any obvious cell adhesion ability, whereas the simultaneously purified recombinant DMP-1 did. A cell adhesion inhibitory analysis was performed by pre-incubating human osteosarcoma MG63 cells with various PP peptides before seeding onto vitronectin. The results obtained revealed that the incorporation of more than one amino acid on both sides of the PP-RGD domain was unable to inhibit the adhesion of MG63 cells onto vitronectin. Furthermore, the inhibitory activity of a peptide containing the PP-RGD domain with an open carboxyl-terminal side (H-463SDESDTNSESANESGSRGDA482-OH) was more potent than that of a peptide containing the RGD domain with an open amino-terminal side (H-478SRGDASYTSDESSDDDNDSDSH499-OH). This phenomenon was supported by the potent cell adhesion and migration abilities of the recombinant truncated PP, which terminated with Ala482. Furthermore, various point mutations in Ala482 and/or Ser483 converted recombinant PP into cell-adhesive proteins. Therefore, we concluded that the Ala482-Ser483 flanking sequence, which was detected in primates and mice, was the key peptide bond that allowed the PP-RGD domain to be sequestered. The differential abilities of PP and DMP-1 to act on integrin imply that DSPP was duplicated from DMP-1 to serve as a crucial extracellular protein for tooth development rather than as an integrin

  3. Investigating the potential for volcano flank instability triggered by recent dike intrusions at Fogo volcano, Cape Verde

    NASA Astrophysics Data System (ADS)

    Bagnardi, Marco; González, Pablo; Hooper, Andrew; Wright, Tim

    2015-04-01

    Gravitational flank-collapses at volcanoes are rare but catastrophic events that have rarely been witnessed by humans (e.g., Mount St. Helens in 1980). It has been proposed that gravitationally unstable volcanic flanks can be classified in two different types based on the flanks slope: volcanoes characterized by gentle slopes (Hawaiian-like) and that have very dynamic flanks exhibiting high rates of deformation and, conversely, steep-sided volcanoes (Macaronesian-like) showing minimal ground deformation. The two types of volcanoes could therefore reach the stable-state through different mechanisms and experience different mass-wasting processes. Numerous giant debris-avalanche deposits have been identified offshore the volcanoes of the Canary Islands and Cape Verde. Given the steep slopes of these volcanoes, the mass-wasting events may have occurred suddenly and with minimal precursory signals. Several mechanisms have been proposed as potential triggers and among these the intrusion of shallow dikes feeding fissure eruptions is one of the best candidates. In this work, we investigate this hypothesis in the light of new and revised results derived from the analysis of geodetic observations at Fogo volcano (Cape Verde). Fogo has erupted twice in the last 20 years (1995 and 2014-2015) and in both occasions the volcano erupted along fissures that seem to be fed by dykes intruding the shallow crust and the volcanic edifice. We re-process radar data from the ERS satellite to obtain state-of-the-art deformation maps spanning the 1995 eruption and revisit previously proposed models of the magmatic system. Our results indicate that both eruptions were fed by sub-vertical dikes, steeply dipping to the SE, and radiating from the Pico do Fogo volcanic cone to the SW. We also study the effect of such magmatic intrusions in terms of the stress regime that they generate and analyze whether the 1995 and 2014 intrusions could potentially destabilize the structures along which a

  4. Growth and collapse of Waianae volcano, Hawaii, as revealed by exploration of its submarine flanks

    USGS Publications Warehouse

    Coombs, Michelle L.; Clague, David A.; Moore, Gregory F.; Cousens, Brian L.

    2004-01-01

    Wai‘anae Volcano comprises the western half of O‘ahu Island, but until recently little was known about the submarine portion of this volcano. Seven new submersible dives, conducted in 2001 and 2002, and multibeam bathymetry offshore of Wai‘anae provide evidence pertaining to the overall growth of the volcano's edifice as well as the timing of collapses that formed the Wai‘anae slump complex. A prominent slope break at ∼1400 mbsl marks the paleoshoreline of Wai‘anae at the end of its shield-building stage and wraps around Ka‘ena Ridge, suggesting that this may have been an extension of Wai‘anae's northwest rift zone. Subaerially erupted tholeiitic lavas were collected from a small shield along the crest of Ka‘ena Ridge. The length of Wai‘anae's south rift zone is poorly constrained but reaches at least 65 km on the basis of recovered tholeiite pillows at this distance from the volcano's center. Wai‘anae's growth was marked by multiple collapse and deformation events during and after its shield stage, resulting in the compound mass wasting features on the volcano's southwest flank (Wai‘anae slump complex). The slump complex, one of the largest in Hawai‘i, covering an area of ∼5500 km2, is composed of several distinct sections on the basis of morphology and the lithologies of recovered samples. Two dives ascended the outer bench of the slump complex and collected predominantly low-S tholeiites that correlate with subaerial lavas erupted early during the volcano's shield stage, from 3.9 to 3.5 Ma. Pillow lavas from the outer bench have Pb, Sr, and Nd isotopic values that overlap with previously published subaerial Wai‘anae lavas. On the basis of the compositions of the recovered samples, the main body of the slump complex, as represented by the outer bench, probably formed during and shortly after the early shield stage. To the southwest of the outer bench lies a broad debris field on the seafloor, interpreted to have formed by a

  5. Early Tertiary exhumation of the flank of a forearc basin, southwest Talkeetna Mountains, Alaska

    USGS Publications Warehouse

    Bleick, Heather A.; Till, Alison B.; Bradley, Dwight C.; O’Sullivan, Paul; Wooden, Joe L.; Bradley, Dan B.; Taylor, Theresa A.; Friedman, Sam B.; Hults, Chad P.

    2012-01-01

    New geochronologic and thermochronologic data from rocks near Hatcher Pass, southwest Talkeetna Mountains, Alaska, record earliest Paleocene erosional and structural exhumation on the flank of the active Cook Inlet forearc basin. Cretaceous plutons shed sediments to the south, forming the Paleocene Arkose Ridge Formation. A Paleocene(?)-Eocene detachment fault juxtaposed ~60 Ma metamorphic rocks with the base of the Arkose Ridge Formation. U-Pb (analyzed by Sensitive High Resolution Ion Micro Probe Reverse Geometry (SHRIMP-RG)) zircon ages of the Cretaceous plutons, more diverse than previously documented, are 90.3±0.3 (previously considered a Jurassic unit), 79.1±1.0, 76.1±0.9, 75.8±0.7, 72.5±0.4, 71.9±0.3, 70.5±0.2, and 67.3±0.2 Ma. The cooling of these plutons occurred between 72 and 66 Ma (zircon fission track (FT) closure ~225°C). 40Ar/39Ar analyses of hornblende, white mica, and biotite fall into this range (Harlan and others, 2003). New apatite FT data collected on a west-to-east transect reveal sequential exhumation of fault blocks at 62.8±2.9, 54±2.5, 52.6±2.8, and 44.4±2.2 Ma. Plutonic clasts accumulated in the Paleocene Arkose Ridge Formation to the south. Detrital zircon (DZ) ages from the formation reflect this provenance: a new sample yielded one grain at 61 Ma, a dominant peak at 76 Ma, and minor peaks at 70, 80, 88, and 92 Ma. The oldest zircon is 181 Ma. Our apatite FT ages range from 35.1 to 50.9 Ma. Greenschist facies rocks now sit structurally between the plutonic rocks and the Arkose Ridge Formation. They are separated from plutonic rocks by the vertical Hatcher Pass fault and from the sedimentary rocks by a detachment fault. Ar cooling ages (Harlan and others, 2003) and new zircon FT ages for these rocks are concordant at 61-57 Ma, synchronous with deposition of the Arkose Ridge Formation. A cooling age of ~46 Ma came from one apatite FT sample. The metamorphic protolith (previously considered Jurassic) was deposited at or after

  6. Crustal structure along the west flank of the Cascades, western Washington

    USGS Publications Warehouse

    Miller, K.C.; Keller, Gordon R.; Gridley, J.M.; Luetgert, J.H.; Mooney, W.D.; Thybo, H.

    1997-01-01

    Knowledge of the crustal structure of the Washington Cascades and adjacent Puget Lowland is important to both earthquake hazards studies and geologic studies of the evolution of this tectonically active region. We present a model for crustal velocity structure derived from analysis of seismic refraction/wide-angle reflection data collected in 1991 in western Washington. The 280-km-long north-south transect skirts the west flank of the Cascades as it crosses three tectonic provinces including the Northwest Cascades Thrust System (NWCS), the Puget Lowland, and the volcanic arc of the southern Cascades. Within the NWCS, upper crustal velocities range from 4.2 to 5.7 km s-1 and are consistent with the presence of a diverse suite of Mesozoic and Paleozoic metasediments and metavolcanics. In the upper 2-3 km of the Puget Lowland velocities drop to 1.7-3.5 km s-1 and reflect the occurrence of Oligocene to recent sediments within the basin. In the southern Washington Cascades, upper crustal velocities range from 4.0 to 5.5 km s-1 and are consistent with a large volume of Tertiary sediments and volcanics. A sharp change in velocity gradient at 5-10 km marks the division between the upper and middle crust. From approximately 10 to 35 km depth the velocity field is characterized by a velocity increase from ???6.0 to 7.2 km s-1. These high velocities do not support the presence of marine sedimentary rocks at depths of 10-20 km beneath the Cascades as previously proposed on the basis of magnetotelluric data. Crustal thickness ranges from 42 to 47 km along the profile. The lowermost crust consists of a 2 to 8-km-thick transitional layer with velocities of 7.3-7.4 km s-1. The upper mantle velocity appears to be an unusually low 7.6-7.8 km s-1. When compared to velocity models from other regions, this model most closely resembles those found in active continental arcs. Distinct seismicity patterns can be associated with individual tectonic provinces along the seismic transect. In

  7. Microbial communities at the borehole observatory on the Costa Rica Rift flank (Ocean Drilling Program Hole 896A).

    PubMed

    Nigro, Lisa M; Harris, Kate; Orcutt, Beth N; Hyde, Andrew; Clayton-Luce, Samuel; Becker, Keir; Teske, Andreas

    2012-01-01

    The microbiology of subsurface, hydrothermally influenced basaltic crust flanking mid-ocean ridges has remained understudied, due to the difficulty in accessing the subsurface environment. The instrumented boreholes resulting from scientific ocean drilling offer access to samples of the formation fluids circulating through oceanic crust. We analyzed the phylogenetic diversity of bacterial communities of fluid and microbial mat samples collected in situ from the observatory at Ocean Drilling Program Hole 896A, drilled into ~6.5 million-year-old basaltic crust on the flank of the Costa Rica Rift in the equatorial Pacific Ocean. Bacterial 16S rRNA gene sequences recovered from borehole fluid and from a microbial mat coating the outer surface of the fluid port revealed both unique and shared phylotypes. The dominant bacterial clones from both samples were related to the autotrophic, sulfur-oxidizing genus Thiomicrospira. Both samples yielded diverse gamma- and alphaproteobacterial phylotypes, as well as members of the Bacteroidetes, Planctomycetes, and Verrucomicrobia. Analysis of ribulose-1,5-bisphosphate carboxylase/oxygenase (RuBisCO) genes (cbbL and cbbM) from the sampling port mat and from the borehole fluid demonstrated autotrophic carbon assimilation potential for in situ microbial communities; most cbbL genes were related to those of the sulfur-oxidizing genera Thioalkalivibrio and Thiomicrospira, and cbbM genes were affiliated with uncultured phylotypes from hydrothermal vent plumes and marine sediments. Several 16S rRNA gene phylotypes from the 896A observatory grouped with phylotypes recovered from seawater-exposed basalts and sulfide deposits at inactive hydrothermal vents, but there is little overlap with hydrothermally influenced basaltic boreholes 1026B and U1301A on the Juan de Fuca Ridge flank, suggesting that site-specific characteristics of Hole 896A (i.e., seawater mixing into borehole fluids) affect the microbial community composition.

  8. Shadow enhancers flanking the HoxB cluster direct dynamic Hox expression in early heart and endoderm development.

    PubMed

    Nolte, Christof; Jinks, Tim; Wang, Xinghao; Martinez Pastor, María Teresa; Krumlauf, Robb

    2013-11-01

    The products of Hox genes function in assigning positional identity along the anterior-posterior body axis during animal development. In mouse embryos, Hox genes located at the 3' end of HoxA and HoxB complexes are expressed in nested patterns in the progenitors of the secondary heart field during early cardiogenesis and the combined activities of both of these clusters are required for proper looping of the heart. Using Hox bacterial artificial chromosomes (BACs), transposon reporters, and transgenic analyses in mice, we present the identification of several novel enhancers flanking the HoxB complex which can work over a long range to mediate dynamic reporter expression in the endoderm and embryonic heart during development. These enhancers respond to exogenously added retinoic acid and we have identified two retinoic acid response elements (RAREs) within these control modules that play a role in potentiating their regulatory activity. Deletion analysis in HoxB BAC reporters reveals that these control modules, spread throughout the flanking intergenic region, have regulatory activities that overlap with other local enhancers. This suggests that they function as shadow enhancers to modulate the expression of genes from the HoxB complex during cardiac development. Regulatory analysis of the HoxA complex reveals that it also has enhancers in the 3' flanking region which contain RAREs and have the potential to modulate expression in endoderm and heart tissues. Together, the similarities in their location, enhancer output, and dependence on retinoid signaling suggest that a conserved cis-regulatory cassette located in the 3' proximal regions adjacent to the HoxA and HoxB complexes evolved to modulate Hox gene expression during mammalian cardiac and endoderm development. This suggests a common regulatory mechanism, whereby the conserved control modules act over a long range on multiple Hox genes to generate nested patterns of HoxA and HoxB expression during

  9. The hercynian compressive then extensive tectonic of the north flank of the Montagne Noire (southern French Massif Central)

    NASA Astrophysics Data System (ADS)

    Turpaud, P.; Matte, P.

    2003-04-01

    The Montagne Noire, (southernmost edge of the Massif Central) is well known on its southern flank by low-grade spectacular hercynian nappes and southward recumbent folds. The northern flank, much less known is separated from the southern nappes by a large high grade metamorphic dome, the Axial Zone, which has been interpreted either as a purely extensive metamorphic core complex or as a compressive migmatitic antiform. The northern flank made of Lower Paleozoic epizonal sediments and granitic orthogneisses was previously interpreted as tectonic units separated by, NE-SW trending, southeastward verging thrusts. Our recent kinematic study shows a more complex structure and history: -- Some of the so-called southeastward thrusts (Brusque area) are in fact large, kilometre thick, ductile sinistral shear-zones with a southwestward thrust component (Guérangé-Lozes et Alsac, 1986), southward verging folds and slaty cleavage. That is the first major deformation in the Northern Montagne Noire and it is still undated. -- Closer to the Axial dome, in the Lacaune area, the most conspicuous structures are younger and related to large northeastward detachment with a LP/MT metamorphism. NE-SW trending lineations are here significant of a strong top to the NE shearing well expressed by fish-like biotites, synkinematic cordierites with helicitic inclusion trails, asymmetric boudinage and F2 northeastward drag folds. This spectacular detachment tectonic, which affects as well the whole northern flank of the granitic-gneissic Axial Zone, is dated by Ar39/Ar40 laser method on synkinematic micas at about 300--310 Ma. This event helped to the exhumation and denudation of the gneissic Axial Zone, just before the deposit of Stephanian limnic coal basins. The MT/BP metamophism is contemporaneous of the ductile detachment tectonic but some clues of gaps of metamorphism in the PT section indicate probably late normal faults with the same kinematics but posterior to the metamorphic climax

  10. 3C3D VSP Imaging of Salt Flanks Using Converted Waves in the Gulf of Mexico

    NASA Astrophysics Data System (ADS)

    Li, Y.; Doherty, F.; Jackson, J.

    2005-05-01

    Locating salt boundary and imaging updip sediment structures flanking the salt domes are very important tasks for exploration in the Gulf of Mexico since major petroleum reserves are often trapped underneath overhangs of diapiric salt domes. Although the top of salt and less steep structures can be well imaged using current surface seismic methods, the steep sides of a salt dome with irregularly shapes are hard to image with adequate accuracy. Thus, Vertical Seismic Profiling (VSP) surveys with three-component (3C) receivers in wells are usually requested for improving images of subsurface structures. Conventional multi-offset VSP (OVSP) and refraction salt proximity (SP) surveys are widely applied in the Gulf of Mexico to improve images of slat interfaces, sub-salt and salt flank structures using P waves. In this paper, we will focus on using converted waves to image the steep salt-sediment boundary. A VSP dataset, including multi-OVSP and a SP survey, acquired in the Gulf of Mexico was used in this study. We analyzed 3C OVSP data to identify and separate converted waves, such as PS, P-SP, P-SS, generated at a salt boundary. Then both PP wave and converted waves were 3C3D depth migrated to generate images of the steep salt-sediment interface. Both transmitted P-P and P-S converted waves from the SP survey were used to calculate 3D salt exit points which delineate the steep salt face. The VSP results derived from both methods are abundant and a suitable 3D visualization tool is required for visual integration and interpretation. The image volumes and other available geophysical and geological data were integrated using a 3D visualization tool specially designed for VSP solutions. The migrated images using PP and converted waves provides a precise and complete definition of the steep salt face and reservoir sands flanking the salt dome. This study indicates that both reflection and reflection surveys can result in a consistent location of the steep salt flank

  11. Observations of the flank of earth's bow shock to -110 R(E) by ISEE 3/ICE

    NASA Technical Reports Server (NTRS)

    Greenstadt, E. W.; Coroniti, F. V.; Traver, D. P.; Smith, E. J.; Slavin, J. A.

    1990-01-01

    The ISEE 3/ICE spacecraft made over 100 crossings of earth's bow shock between x(SEC) = -20 and -110 R(E) most of them further away than -60 R(E) while resetting its course for comet Giacobini-Zinner. The parameters of the crossings are tabulated and some of their magnetic, plasma wave, and spectral profiles at low magnetosonic Mach numbers are displayed. Loci of crossings are compared with the extrapolation of a model of earlier statistical success, showing that the model remains useful in the far flank.

  12. A Sheared Sill Triggers Large Flank Displacements at Piton de la Fournaise Volcano (Réunion Island)

    NASA Astrophysics Data System (ADS)

    Tridon, M.; Cayol, V.; Froger, J. L.; Augier, A.

    2015-12-01

    In April 2007, an eruption with an exceptional intensity occured 7 km southeast of the central cone of the Piton de la Fournaise (Réunion Island). ALOS and ENVISAT satellites recorded up to 1.4 meter of displacement towards the east, and a general subsidence up to 45 cm of the Eastern Flank of the volcano. This movement continued for more than one year after the end of the eruption. In this work, we address the Eastern Flank displacement during and after the April 2007 eruption by inverting post-eruptive InSAR data. Our purpose is twofold: assess the hazard associated to flank displacement and understand the origin of the distal location of the eruption. C-band ENVISAT interferograms from six different lines of sight were interpolated to cover a common period from May 2007 to July 2008. We combine a Mixed Boundary Element Method (MBEM) assuming linear elasticity of the edifice and a Neighborhood Algorithm to invert the surface displacement. The real topography is taken into account using a Digital Elevation Model. The fracture geometry is supposed to be a curved quadrangle. Linear parameters such as pressure and shear stress are also inverted. Inversion results show that a 5 by 8 km trapezoïdal fracture reproduces well the first order displacement of the Eastern Flank. The fracture is 500 to 1000 m deep with a low dip angle to the East. It links the summit cone to the eruptive fissure of April 2007 which corresponds to the expected magma path. The fracture is submitted to an eastward slip up to around 25 cm, and a closure up to 20 cm. To confirm the surprising result of a closure, we made an inversion with a version of MBEM where closure is forbidden and we tested a linear inversion of slip distribution on a fracture of the same geometry assuming an elastic half space. These inversions confirmed the closure and lead us to propose that the source of the April 2007 eruption is a sheared sill, which underwent closure in the post-eruptive period.

  13. Comparison of orthologous and paralogous DNA flanking the wheat high molecular weight glutenin genes: sequence conservation and divergence, transposon distribution, and matrix-attachment regions.

    PubMed

    Anderson, O D; Larka, L; Christoffers, M J; McCue, K F; Gustafson, J P

    2002-04-01

    Extended flanking DNA sequences were characterized for five members of the wheat high molecular weight (HMW) glutenin gene family to understand more of the structure, control, and evolution of these genes. Analysis revealed more sequence conservation among orthologous regions than between paralogous regions, with differences mainly owing to transposition events involving putative retrotransposons and several miniature inverted transposable elements (MITEs). Both gyspy-like long terminal repeat (LTR) and non-LTR retrotransposon sequences are represented in the flanking DNAs. One of the MITEs is a novel class, but another MITE is related to the maize Stowaway family and is widely represented in Triticeae express sequence tags (ESTs). Flanking DNA of the longest sequence, a 20 425-bp fragment including and surrounding the HMW-glutenin Bx7 gene, showed additional cereal gene-like sequences both immediately 5' and 3' to the HMW-glutenin coding region. The transcriptional activities of sequences related to these flanking putative genes and the retrotransposon-related regions were indicated by matches to wheat and other Triticeae ESTs. Predictive analysis of matrix-attachment regions (MARs) of the HMW glutenin and several alpha-, gamma-, and omega-gliadin flanking DNAs indicate potential MARs immediately flanking each of the genes. Matrix binding activity in the predicted regions was confirmed for two of the HMW-glutenin genes.

  14. Flank eruptions of Mt Etna during the Greek-Roman and Early Medieval periods: New data from 226Ra-230Th dating and archaeomagnetism

    NASA Astrophysics Data System (ADS)

    Branca, Stefano; Condomines, Michel; Tanguy, Jean-Claude

    2015-10-01

    In this paper, we present new data from 226Ra-230Th dating and archaeomagnetism with the aim of improving the knowledge of the flank eruptions that occurred at Mt Etna during the Greek-Roman and Early Medieval periods, as defined in the new geological map of the volcano. The combination of the two dating techniques demonstrates that three major flank eruptions occurred on the lower north and west flanks during Greek-Roman epochs, producing large scoria cones and extensive lava flows. In particular, the Mt Ruvolo and Mt Minardo events highly impacted the territory of the west flank, notably by damming the Simeto River. The new data of the Millicucco and Due Monti lava flows, on the lower north-east flank, indicate a younger age than their stratigraphic ages quoted in the 2011 geological map, since they occurred around 700 and 500 AD, respectively. None of the large flank eruptions occurring on the lower slopes of Etna during the Early Medieval age are reported in the historical sources. Overall, our paper shows that a comprehensive assessment of eruptions at Mount Etna in the last three millennia can only be achieved through a multidisciplinary approach.

  15. Active evaporite tectonics and collapse in the Eagle River valley and the southwestern flank of the White River uplift, Colorado

    USGS Publications Warehouse

    Scott, R.B.; Lidke, D.J.; Hudson, M.R.; Perry, W.J.; Bryant, Bruce; Kunk, M.J.; Budahn, J.R.; Byers, F.M.

    1999-01-01

    This field trip presents field evidence for Neogene evaporite tectonism, dissolution of evaporates, and related collapse in Eagle River valley and along the southwestern flank of the White River uplift. In the Eagle collapse center, Pennsylvanian evaporite flowed to form anticlinal diapirs, dissolved, and disrupted a lower Miocene basaltic plateau originally at elevations as high as 3.35 km by tilting, faulting, and sagging to elevations as low as about 2.1 km. Also in the Eagle collapse center, the 30 x 10-km, homoclinal Hardscrabble Mountain sank into evaporite during Triassic and Permian collapse followed by Neogene(?) tilting and collapse, based on seismic reflection data. Along the southwestern flank of the White River uplift in the northwestern part of the Carbondale collapse center, parts of the Grand Hogback monocline have collapsed northeastward toward a series of strike-elongate extrusive diapirs. The volume of evaporite removed from the Eagle and Carbondale collapse centers during the Neogene (about 2,250 km3 from an area of roughly 4,500 km2) was calculated by measuring the departure of collapsed basalts from an assumed original basalt plateau. Regional Neogene uplift and incision of the Rocky Mountains, which locally began about 8-10 Ma, probably triggered dissolution and collapse. Presently the Colorado River removes a dissolved-solids load of about 1.4 x 109 kg per year from the two collapse centers.

  16. Conserved 5' flank homologies in dipteran 5S RNA genes that would function on 'A' form DNA.

    PubMed Central

    Rubacha, A; Sumner, W; Richter, L; Beckingham, K

    1984-01-01

    We have sequenced the 480 base pair (bp) repeating unit of the 5S RNA genes of the Dipteran fly Calliphora erythrocephala and compared this sequence to the three known 5S RNA gene sequences from the Dipteran Genus Drosophila (1,2). A striking series of five perfectly conserved homologies identically positioned within the 5' flanks of all four Dipteran 5S RNA coding regions has thus been identified. The spacing (12-13 bp) between all of these homologies is typical of A form rather than B form DNA. Given that the eukaryotic 5S RNA gene specific initiation factor TFIIIA (3) is a DNA unwinding protein (4), a role for these Dipteran 5' flank homologies in initiation site selection on 5S RNA genes transiently unwound for transcription is suggested. One of the Dipteran homology blocks is highly conserved in sequence and position in all but one of the eukaryotic 5S RNA gene sequences known to date (17/18 genes). Its sequence (consensus: TATAAG) and position (average center: -26 bp) are highly reminiscent of the polymerase II gene 'TATA' box (5). PMID:6209610

  17. A 66-bp deletion in growth hormone releasing hormone gene 5'-flanking region with largemouth bass recessive embryonic lethal.

    PubMed

    Ma, D M; Han, L Q; Bai, J J; Li, S J; Fan, J J; Yu, L Y; Quan, Y C

    2014-06-01

    Growth hormone releasing hormone (GHRH) regulates the secretion of growth hormone (GH) in the pituitary gland. A 66-bp deletion (c.-923_-858del) was detected in the 5'-flanking sequence of the largemouth bass (Micropterus salmoides) GHRH gene. In two cultured random populations of adult individuals (A: n = 170 and B: n = 150), the genotype ratios of +/+:+/- were 2.5:1 and 2.8:1 respectively. Only one -/- fish was detected. A Largemouth bass family was constructed with two heterozygous individuals (+/-) as parents. The genotype ratio of +/+:+/-:-/- in the filial generation embryos was 1:1.6:0.1 at the neurula and 1:2:0 at hatched larvae stages. This indicated that the 66-bp deletion was a recessive lethal site and that homozygous individuals (-/-) died off in embryonic development. The growth traits (body weight, body length and body depth) were measured, and the GHRH mRNA expression levels in brain tissue were detected using real-time PCR. The effects of genotype (+/-) on growth traits and GHRH mRNA expression were not significant. Although the cause of death was not clear, the results hint that the 66-bp deletion site in GHRH 5'-flanking sequence significantly affects the livability in largemouth bass embryonic development.

  18. Comparative analysis on the structural features of the 5' flanking region of κ-casein genes from six different species

    PubMed Central

    Gerencsér, Ákos; Barta, Endre; Boa, Simon; Kastanis, Petros; Bösze, Zsuzsanna; Whitelaw, C Bruce A

    2002-01-01

    κ-casein plays an essential role in the formation, stabilisation and aggregation of milk micelles. Control of κ-casein expression reflects this essential role, although an understanding of the mechanisms involved lags behind that of the other milk protein genes. We determined the 5'-flanking sequences for the murine, rabbit and human κ-casein genes and compared them to the published ruminant sequences. The most conserved region was not the proximal promoter region but an approximately 400 bp long region centred 800 bp upstream of the TATA box. This region contained two highly conserved MGF/STAT5 sites with common spacing relative to each other. In this region, six conserved short stretches of similarity were also found which did not correspond to known transcription factor consensus sites. On the contrary to ruminant and human 5' regulatory sequences, the rabbit and murine 5'-flanking regions did not harbour any kind of repetitive elements. We generated a phylogenetic tree of the six species based on multiple alignment of the κ-casein sequences. This study identified conserved candidate transcriptional regulatory elements within the κ-casein gene promoter. PMID:11929628

  19. The phylogeny of the social wasp subfamily Polistinae: evidence from microsatellite flanking sequences, mitochondrial COI sequence, and morphological characters

    PubMed Central

    Arévalo, Elisabeth; Zhu, Yong; Carpenter, James M; Strassmann, Joan E

    2004-01-01

    Background Social wasps in the subfamily Polistinae (Hymenoptera: Vespidae) have been important in studies of the evolution of sociality, kin selection, and within colony conflicts of interest. These studies have generally been conducted within species, because a resolved phylogeny among species is lacking. We used nuclear DNA microsatellite flanking sequences, mitochondrial COI sequence, and morphological characters to generate a phylogeny for the Polistinae (Hymenoptera) using 69 species. Results Our phylogeny is largely concordant with previous phylogenies at higher levels, and is more resolved at the species level. Our results support the monophyly of the New World subgenera of Polistini, while the Old World subgenera are a paraphyletic group. All genera for which we had more than one exemplar were supported as monophyletic except Polybia which is not resolved, and may be paraphyletic. Conclusion The combination of DNA sequences from flanks of microsatellite repeats with mtCOI sequences and morphological characters proved to be useful characters establishing relationships among the different subgenera and species of the Polistini. This is the first detailed hypothesis for the species of this important group. PMID:15070433

  20. Nitrogen Stimulates the Growth of Subsurface Basalt-associated Microorganisms at the Western Flank of the Mid-Atlantic Ridge

    PubMed Central

    Zhang, Xinxu; Fang, Jing; Bach, Wolfgang; Edwards, Katrina J.; Orcutt, Beth N.; Wang, Fengping

    2016-01-01

    Oceanic crust constitutes the largest aquifer system on Earth, and microbial activity in this environment has been inferred from various geochemical analyses. However, empirical documentation of microbial activity from subsurface basalts is still lacking, particularly in the cool (<25°C) regions of the crust, where are assumed to harbor active iron-oxidizing microbial communities. To test this hypothesis, we report the enrichment and isolation of crust-associated microorganisms from North Pond, a site of relatively young and cold basaltic basement on the western flank of the Mid-Atlantic Ridge that was sampled during Expedition 336 of the Integrated Ocean Drilling Program. Enrichment experiments with different carbon (bicarbonate, acetate, methane) and nitrogen (nitrate and ammonium) sources revealed significant cell growth (one magnitude higher cell abundance), higher intracellular DNA content, and increased Fe3+/ΣFe ratios only when nitrogen substrates were added. Furthermore, a Marinobacter strain with neutrophilic iron-oxidizing capabilities was isolated from the basalt. This work reveals that basalt-associated microorganisms at North Pond had the potential for activity and that microbial growth could be stimulated by in vitro nitrogen addition. Furthermore, iron oxidation is supported as an important process for microbial communities in subsurface basalts from young and cool ridge flank basement. PMID:27199959

  1. Venting formation fluids from deep-sea boreholes in a ridge flank setting: ODP Sites 1025 and 1026

    NASA Astrophysics Data System (ADS)

    Wheat, C. Geoffrey; Jannasch, Hans W.; Kastner, Miriam; Plant, Josh N.; Decarlo, Eric H.; Lebon, Geoff

    2004-08-01

    During ODP Leg 168, two of ten boreholes, ODP Holes 1025C and 1026B, were cased through the sediment section, penetrated basaltic crust that is overpressured, and sealed. In 1999 and 2000 the seals were removed, allowing crustal formation fluids to vent and be sampled. The composition of these fluids is compared to those of basal deep-sea pore waters, which have been the basis for estimating geochemical fluxes from low-temperature ridge flank hydrothermal systems. Estimates for the composition of the major ions in formation fluids based on basal pore waters are within 5% of the values measured in borehole fluids. Similar comparisons for minor and trace elements are not as good; some are reactive in the sediment section, resulting in large uncertainties in the pore water extrapolation, while others are influenced by a variety of contaminants, including steel, grease, drilling muds, and basal sediment. Evidence for contamination includes high dissolved and particulate concentrations of several metals (e.g., Fe, Cu, Co, Zn, and Pb) and measurable changes in concentration during the past four years in response to reaction with basal sediment. This new confidence in estimating the primary composition of formation fluids, coupled with advances in thermodynamic and kinetic models, reveals the possibility of anhydrite precipitation in ridge flank hydrothermal systems at temperatures of ˜70°C. Such new insights allow us to address the timing and conditions under which seawater-crustal reactions occur, leading to more accurate models of crustal evolution.

  2. Nitrogen Stimulates the Growth of Subsurface Basalt-associated Microorganisms at the Western Flank of the Mid-Atlantic Ridge.

    PubMed

    Zhang, Xinxu; Fang, Jing; Bach, Wolfgang; Edwards, Katrina J; Orcutt, Beth N; Wang, Fengping

    2016-01-01

    Oceanic crust constitutes the largest aquifer system on Earth, and microbial activity in this environment has been inferred from various geochemical analyses. However, empirical documentation of microbial activity from subsurface basalts is still lacking, particularly in the cool (<25°C) regions of the crust, where are assumed to harbor active iron-oxidizing microbial communities. To test this hypothesis, we report the enrichment and isolation of crust-associated microorganisms from North Pond, a site of relatively young and cold basaltic basement on the western flank of the Mid-Atlantic Ridge that was sampled during Expedition 336 of the Integrated Ocean Drilling Program. Enrichment experiments with different carbon (bicarbonate, acetate, methane) and nitrogen (nitrate and ammonium) sources revealed significant cell growth (one magnitude higher cell abundance), higher intracellular DNA content, and increased Fe(3+)/ΣFe ratios only when nitrogen substrates were added. Furthermore, a Marinobacter strain with neutrophilic iron-oxidizing capabilities was isolated from the basalt. This work reveals that basalt-associated microorganisms at North Pond had the potential for activity and that microbial growth could be stimulated by in vitro nitrogen addition. Furthermore, iron oxidation is supported as an important process for microbial communities in subsurface basalts from young and cool ridge flank basement.

  3. Organization and functional analysis of the 5' flanking regions of myostatin-1 and 2 genes from Larimichthys crocea.

    PubMed

    Xue, Liangyi; Dong, Xiaojing; Zhang, Xiaoju; Diallo, Amadou

    2012-05-01

    Myostatin (MSTN) is a negative regulator of skeletal muscle growth and development. There are two types of MSTNs in fish, but little is known about their gene regulation. Here, the 5' flanking fragments of 1029 bp from MSTN-1 and 643 bp from MSTN-2 were cloned, sequenced, and analyzed in Larimichthys crocea. Both fragments contained CAAT box and several putative cis-regulatory elements. However, putative TATA box, MyoD, MEF3, SP1, USF, and GH-CSE sites were identified only in the L. crocea MSTN-1 (lcMSTN-1) promoter. Transcriptional activities of four fragments (1013, 841, 514, and 261 bp) truncated from lcMSTN-1 upstream region and two fragments (643 and 296 bp) from lcMSTN-2 upstream region were examined in vitro, using transient transfection in CIK and L6 cells. In CIK cells, the promoter activity correlated positively with the length of truncated fragments in both MSTN-1 and 2. The lcMSTN-2 promoter showed a higher activity than lcMSTN-1 in the corresponding region, which was consistent with MSTN gene expression in vivo. In L6 cells, lcMSTN-2 upstream showed an extremely high luciferase activity. These data indicated that both cloned 5' flanking sequences contained functional promoters, and that transcription regulation of lcMSTN-1 and 2 promoters was significantly different between mammalian and fish cells.

  4. Debris avalanche deposits offshore St. Vincent (West Indies): Impact of flank-collapse events on the morphological evolution of the island

    NASA Astrophysics Data System (ADS)

    Le Friant, Anne; Boudon, Georges; Arnulf, Adrien; Robertson, Richard E. A.

    2009-01-01

    Major scarp features have been previously identified on Soufrière volcano (St. Vincent, Lesser Antilles) and recently interpreted as flank-collapse structures although no associated debris avalanche deposits were recognized. New offshore high-resolution bathymetry and geophysical data have been collected during the Caraval cruise (N/O L'Atalante, February-March 2002) offshore of St. Vincent. Recent analysis of these data leads us to identify and characterize a debris avalanche deposit on the western flank of Soufrière volcano, which extends down to the Grenada Basin. The origin of the submarine deposit by submarine slump or flank-collapse event is discussed but data analysis tends support the occurrence of a flank-collapse event during the evolution of Soufrière volcano. The collapse volume has been estimated to about 9 km 3 and the age of the event is less than 50,000 years (using marine geophysical constraints). The origin of the flank-collapse can be related to local causes (weakening of the flank by intense hydrothermal alteration, magmatic injections, increase of the load by accumulation of volcanic products) and/or to regional causes (asymmetry of the arc, sea level variations induced by climate change that may have an effect on the stability of the volcano). Taking into account this event, we proposed a model for the evolution of Soufrière volcano including a new estimation of the magma production rate. The estimation indicates that Soufrière volcano is one of the most active volcanoes of the arc. A future flank-collapse event could have catastrophic consequences for the entire area due to the emplacement of voluminous, potentially tsunamigenic, debris avalanches.

  5. Flank Collapse Assessment At Kick-'em-Jenny Submarine Volcano (Lesser Antilles): A Combined Approach Using Modelling and Experiments

    NASA Astrophysics Data System (ADS)

    Dondin, Frédéric; Heap, Michael; Robert, Richard E. A.; Dorville, Jean-Francois M.; Carey, Steven

    2016-04-01

    Volcanic landslides - the result of volcanic flank failure - are highly hazardous mass movements due to their high mobility, the wide area they can impact, and their potential to generate tsunamis. In the Lesser Antilles at least 53 episodes of flank collapse have been identified, with many of them associated with voluminous (Vdeposit exceeding 1 km3) submarine volcanic landslide deposits. The existence of such voluminous deposits highlights the hazard of potentially devastating tsunami waves to the populated islands of the Lesser Antilles. To help understand and mitigate such hazards, we applied a relative stability assessment method to the only active submarine volcano of the Lesser Antilles island arc: Kick-'em-Jenny (KeJ). KeJ - located 8 km north of the island of Grenada - is the southernmost edifice in the arc with recognized associated volcanic landslide deposits. From the three identified landslide prehistoric episodes, one is associated with a collapse volume of about 4.4 km3. Numerical simulations considering a single pulse collapse revealed that this episode would have produced a regional tsunami. A volume estimate of the present day edifice is about 1.5 km3. We aim to quantify potential initial volumes of collapsed material using relative instability analysis (RIA). The RIA evaluates the critical potential failure surface associated with factor of safety (Fs) inferior to 1 and compares them to areas of deficit/surplus of mass/volume obtained from the comparison of an high resolution digital elevation model of the edifice with an ideal 3D surface named Volcanoid. To do so we use freeware programs VolcanoFit 2.0 and SSAP 4.5. We report, for the first time, results of a Limit Equilibrium Method (Janbu's rigorous method) as a slope stability computation analysis performed using geomechanical parameters retrieved from rock mechanics tests performed on two rock basaltic-andesite rock samples collected from within the crater of the volcano during the 1

  6. Identification of Genomic Insertion and Flanking Sequence of G2-EPSPS and GAT Transgenes in Soybean Using Whole Genome Sequencing Method.

    PubMed

    Guo, Bingfu; Guo, Yong; Hong, Huilong; Qiu, Li-Juan

    2016-01-01

    Molecular characterization of sequence flanking exogenous fragment insertion is essential for safety assessment and labeling of genetically modified organism (GMO). In this study, the T-DNA insertion sites and flanking sequences were identified in two newly developed transgenic glyphosate-tolerant soybeans GE-J16 and ZH10-6 based on whole genome sequencing (WGS) method. More than 22.4 Gb sequence data (∼21 × coverage) for each line was generated on Illumina HiSeq 2500 platform. The junction reads mapped to boundaries of T-DNA and flanking sequences in these two events were identified by comparing all sequencing reads with soybean reference genome and sequence of transgenic vector. The putative insertion loci and flanking sequences were further confirmed by PCR amplification, Sanger sequencing, and co-segregation analysis. All these analyses supported that exogenous T-DNA fragments were integrated in positions of Chr19: 50543767-50543792 and Chr17: 7980527-7980541 in these two transgenic lines. Identification of genomic insertion sites of G2-EPSPS and GAT transgenes will facilitate the utilization of their glyphosate-tolerant traits in soybean breeding program. These results also demonstrated that WGS was a cost-effective and rapid method for identifying sites of T-DNA insertions and flanking sequences in soybean.

  7. Two encounters with the flank low-latitude boundary layer - Further evidence for closed field topology and investigation of the internal structure

    NASA Technical Reports Server (NTRS)

    Traver, D. P.; Mitchell, D. G.; Williams, D. J.; Frank, L. A.; Huang, C. Y.

    1991-01-01

    The structure of the flank low-latitude boundary layer (LLBL) is examined through differential energy spectra and particle angular anisotropies for traversals of the dawn flank (December 19, 1977) and dusk flank (July 7, 1978) during periods of predominantly northward magnetosheath field orientation. Spectra are presented that were obtained from combined ISEE 1 low-energy-proton and electron-differential-energy-analyzer and medium-energy-particle-instrument data extending over the 200-eV/q to 2-MeV energy range for the plasma sheet, stagnation region, outer LLBL, and magnetosheath regions. The stagnation region and the outer LLBL are each a mixture of plasma-sheet and magnetosheath populations, but the stagnation region contains a relatively higher fraction of plasma sheet particles, consistent with its placement earthward of the outer LLBL. Evidence for energization of thermal electrons appears during the dusk flank crossing. Bidirectional field-aligned ion distributions are observed with typically 5-to-1 enhancement of the flux along the magnetic field during certain portions of the dusk flank crossing.

  8. Identification of Genomic Insertion and Flanking Sequence of G2-EPSPS and GAT Transgenes in Soybean Using Whole Genome Sequencing Method

    PubMed Central

    Guo, Bingfu; Guo, Yong; Hong, Huilong; Qiu, Li-Juan

    2016-01-01

    Molecular characterization of sequence flanking exogenous fragment insertion is essential for safety assessment and labeling of genetically modified organism (GMO). In this study, the T-DNA insertion sites and flanking sequences were identified in two newly developed transgenic glyphosate-tolerant soybeans GE-J16 and ZH10-6 based on whole genome sequencing (WGS) method. More than 22.4 Gb sequence data (∼21 × coverage) for each line was generated on Illumina HiSeq 2500 platform. The junction reads mapped to boundaries of T-DNA and flanking sequences in these two events were identified by comparing all sequencing reads with soybean reference genome and sequence of transgenic vector. The putative insertion loci and flanking sequences were further confirmed by PCR amplification, Sanger sequencing, and co-segregation analysis. All these analyses supported that exogenous T-DNA fragments were integrated in positions of Chr19: 50543767–50543792 and Chr17: 7980527–7980541 in these two transgenic lines. Identification of genomic insertion sites of G2-EPSPS and GAT transgenes will facilitate the utilization of their glyphosate-tolerant traits in soybean breeding program. These results also demonstrated that WGS was a cost-effective and rapid method for identifying sites of T-DNA insertions and flanking sequences in soybean. PMID:27462336

  9. Reconstructing past seawater Mg/Ca and Sr/Ca from mid-ocean ridge flank calcium carbonate veins.

    PubMed

    Coggon, Rosalind M; Teagle, Damon A H; Smith-Duque, Christopher E; Alt, Jeffrey C; Cooper, Matthew J

    2010-02-26

    Proxies for past seawater chemistry, such as Mg/Ca and Sr/Ca ratios, provide a record of the dynamic exchanges of elements between the solid Earth, the atmosphere, and the hydrosphere and the evolving influence of life. We estimated past oceanic Mg/Ca and Sr/Ca ratios from suites of 1.6- to 170-million-year-old calcium carbonate veins that had precipitated from seawater-derived fluids in ocean ridge flank basalts. Our data indicate that before the Neogene, oceanic Mg/Ca and Sr/Ca ratios were lower than in the modern ocean. Decreased ocean spreading since the Cretaceous and the resulting slow reduction in ocean crustal hydrothermal exchange throughout the early Tertiary may explain the recent rise in these ratios.

  10. Numerical simulation of the last flank-collapse event of Montagne Pelée, Martinique, Lesser Antilles

    NASA Astrophysics Data System (ADS)

    Le Friant, Anne; Heinrich, Philippe; Deplus, Christine; Boudon, Georges

    2003-01-01

    We model the submarine emplacement of a debris avalanche generated by the last flank-collapse event of Montagne Pelée volcano. We estimate the collapsed volume (1.7 km3) using both the volume of the missing material in the horseshoe-shaped structure and the volume of submarine deposits. This avalanche is treated as the gravitational flow of a homogeneous continuum. It is simulated by a finite-difference model, solving mass and momentum conservation equations, that are depth-averaged over the slide thickness. Numerical simulations show that the emplacement of this debris-avalanche can be suitably modeled by a Coulomb-type friction law with a variable friction angle below 10°. We propose that variations of the friction angle are mainly influenced by the thickness of the flowing mass.

  11. Revealing the hidden faults in the SE flank of Mt. Etna using radon in-soil gas measurement.

    PubMed

    Johnová, K; Thinová, L; Giammanco, S

    2014-07-01

    Although there are many methods for investigating tectonic structures, many faults remain hidden, and they can endanger the life and property of people living along them. The slopes of volcanoes are covered with such hidden faults, near which strong earthquakes and gas releases can appear. Revealing hidden faults can therefore contribute significantly to the protection of people living in volcanic areas. In the study, seven different techniques were used for making measurements of in-soil radon concentrations in order to search for hidden faults on the SE flank of the Mt. Etna volcano. These reported methods had previously been proved to be useful tools for investigating fault structures. The main aim of the experiment presented here was to evaluate the usability of these methods in the geological conditions of the Mt. Etna region, and to find the best place for continual radon monitoring using a permanent station in the near future.

  12. Microearthquake streaks and seismicity triggered by slow earthquakes on the mobile south flank of Kilauea Volcano, Hawai'i

    USGS Publications Warehouse

    Wolfe, C.J.; Brooks, B.A.; Foster, J.H.; Okubo, P.G.

    2007-01-01

    We perform waveform cross correlation and high precision relocation of both background seismicity and seismicity triggered by periodic slow earthquakes at Kilauea Volcano's mobile south flank. We demonstrate that the triggered seismicity dominantly occurs on several preexisting fault zones at the Hilina region. Regardless of the velocity model employed, the relocated earthquake epicenters and triggered seismicity localize onto distinct fault zones that form streaks aligned with the slow earthquake surface displacements determined from GPS. Due to the unknown effects of velocity heterogeneity and nonideal station coverage, our relocation analyses cannot distinguish whether some of these fault zones occur within the volcanic crust at shallow depths or whether all occur on the decollement between the volcano and preexisting oceanic crust at depths of ???8 km. Nonetheless, these Hilina fault zones consistently respond to stress perturbations from nearby slow earthquakes. Copyright 2007 by the American Geophysical Union.

  13. Long-term (17 Ma) turbidite record of the timing and frequency of large flank collapses of the Canary Islands

    NASA Astrophysics Data System (ADS)

    Hunt, J. E.; Talling, P. J.; Clare, M. A.; Jarvis, I.; Wynn, R. B.

    2014-08-01

    turbidites on the Madeira Abyssal Plain provide a record of large-volume volcanic island flank collapses from the Canary Islands. This long-term record spans 17 Ma, and comprises 125 volcaniclastic beds. Determining the timing, provenance and volumes of these turbidites provides key information about the occurrence of mass wasting from the Canary Islands, especially the western islands of Tenerife, La Palma and El Hierro. These turbidite records demonstrate that landslides often coincide with protracted periods of volcanic edifice growth, suggesting that loading of the volcanic edifices may be a key preconditioning factor for landslide triggers. Furthermore, the last large-volume failures from Tenerife coincide with explosive volcanism at the end of eruptive cycles. Many large-volume Canary Island landslides also occurred during periods of warmer and wetter climates associated with sea-level rise and subsequent highstand. However, these turbidites are not serially dependent and any association with climate or sea level change is not statistically significant.

  14. Plasma wave profiles of earth's bow shock at low Mach numbers - ISEE 3 observations on the far flank

    NASA Technical Reports Server (NTRS)

    Greenstadt, E. W.; Coroniti, F. V.; Moses, S. L.; Smith, E. J.

    1992-01-01

    A survey of selected crossings far downstream from the subsolar shock is presented in which the overall plasma wave (PW) behavior of a selected set of nearly perpendicular crossings and another set of limited Mach number but broad geometry are delinated. The result is a generalizable PW signature, or signatures, of low Mach number shocks and some likely implications of those signatures for the weak shock's plasma physical processes on the flank. The data are found to be consistent with the presence of ion beam interactions producing noise ahead of the shock in the ion acoustic frequency range. The presence or absence, and the amplitudes, of PW activity are explainable by the presence or absence of a population of upstream ions controlled by the component of the interplanetary magnetic field normal to the solar wind flow.

  15. Weak, quasiparallel profiles of earth's bow shock - A comparison between numerical simulations and ISEE 3 observations on the far flank

    NASA Technical Reports Server (NTRS)

    Greenstadt, E. W.; Coroniti, F. V.; Moses, S. L.; Tsurutani, B. T.; Omidi, N.; Quest, K. B.; Krauss-Varban, D.

    1991-01-01

    Over 200 crossings of the distant downwind flanks of earth's magnetosonic bow shock by ISEE 3 included many cases of weak, or low Mach number, quasi-parallel shocks. A consistent feature of the magnetic field profiles was the presence of large amplitude, near periodic to irregular transverse oscillations downstream from even the weakest Q-parallel shocks. Large downstream perturbations with whistler-like features similar to those of the observations appear in 1D simulations when the Alfven Mach number M(A) is greater than 2.5 but not when M(A) = 2.1. The observed cases with downstream waves also occurred when M(A) is greater than about 2.5, suggesting the importance of the Alfven as opposed to magnetosonic Mach number in determining the signature of weak, Q-parallel shocks.

  16. FLAGdb/FST: a database of mapped flanking insertion sites (FSTs) of Arabidopsis thaliana T-DNA transformants.

    PubMed

    Samson, F; Brunaud, V; Balzergue, S; Dubreucq, B; Lepiniec, L; Pelletier, G; Caboche, M; Lecharny, A

    2002-01-01

    A large collection of T-DNA insertion transformants of Arabidopsis thaliana has been generated at the Institute of Agronomic Research, Versailles, France. The molecular characterisation of the insertion sites is currently performed by sequencing genomic regions flanking the inserted T-DNA (FST). The almost complete sequence of the nuclear genome of A.thaliana provides the framework for organising FSTs in a genome oriented database, FLAGdb/FST (http://genoplante-info.infobiogen.fr). The main scope of FLAGdb/FST is to help biologists to find the FSTs that interrupt the genes in which they are interested. FSTs are anchored to the genome sequences of A.thaliana and positions of both predicted genes and FSTs are shown graphically on sequences. Requests to locate the genomic position of a query sequence are made using BLAST programs. The response delivered by FLAGdb/FST is a graphical representation of the putative FSTs and of predicted genes in a 20 kb region.

  17. Impact of Bottom Trawling on Deep-Sea Sediment Properties along the Flanks of a Submarine Canyon

    PubMed Central

    Martín, Jacobo; Puig, Pere; Masqué, Pere; Palanques, Albert; Sánchez-Gómez, Anabel

    2014-01-01

    The offshore displacement of commercial bottom trawling has raised concerns about the impact of this destructive fishing practice on the deep seafloor, which is in general characterized by lower resilience than shallow water regions. This study focuses on the flanks of La Fonera (or Palamós) submarine canyon in the Northwestern Mediterranean, where an intensive bottom trawl fishery has been active during several decades in the 400–800 m depth range. To explore the degree of alteration of surface sediments (0–50 cm depth) caused by this industrial activity, fishing grounds and control (untrawled) sites were sampled along the canyon flanks with an interface multicorer. Sediment cores were analyzed to obtain vertical profiles of sediment grain-size, dry bulk density, organic carbon content and concentration of the radionuclide 210Pb. At control sites, surface sediments presented sedimentological characteristics typical of slope depositional systems, including a topmost unit of unconsolidated and bioturbated material overlying sediments progressively compacted with depth, with consistently high 210Pb inventories and exponential decaying profiles of 210Pb concentrations. Sediment accumulation rates at these untrawled sites ranged from 0.3 to 1.0 cm y−1. Sediment properties at most trawled sites departed from control sites and the sampled cores were characterized by denser sediments with lower 210Pb surface concentrations and inventories that indicate widespread erosion of recent sediments caused by trawling gears. Other alterations of the physical sediment properties, including thorough mixing or grain-size sorting, as well as organic carbon impoverishment, were also visible at trawled sites. This work contributes to the growing realization of the capacity of bottom trawling to alter the physical properties of surface sediments and affect the seafloor integrity over large spatial scales of the deep-sea. PMID:25111298

  18. Three-dimensional structure of the submarine flanks of La Réunion inferred from geophysical data

    NASA Astrophysics Data System (ADS)

    Gailler, Lydie-Sarah; LéNat, Jean-FrançOis

    2010-12-01

    La Réunion (Indian Ocean) constitutes a huge volcanic oceanic system of which most of the volume is submerged. We present a study of its submarine part based on the interpretation of magnetic and gravity data compiled from old and recent surveys. A model of the submarine internal structure is derived from 3-D and 2-D models using constraints from previous geological and geophysical studies. Two large-scale, previously unknown, buried volcanic construction zones are discovered in continuation of the island's construction. To the east, the Alizés submarine zone is interpreted as the remnants of Les Alizés volcano eastward flank whose center is marked by a large hypovolcanic intrusion complex. To the southwest, the Etang Salé submarine zone is interpreted as an extension of Piton des Neiges, probably fed by a volcanic rift zone over a large extent. They were predominantly built during the Matuyama period and thus probably belong to early volcanism. A correlation exists between their top and seismic horizons recognized in previous studies and interpreted as the base of the volcanic edifice. Their morphology suggested a lithospheric bulging beneath La Réunion, not required to explain our data, since the seismic interfaces match the top of our volcanic constructions. The coastal shelf coincides with a negative Bouguer anomaly belt, often associated with magnetic anomalies, suggesting a shelf built by hyaloclastites. A detailed analysis of the offshore continuation of La Montagne Massif to the north confirms this hypothesis. The gravity analysis confirms that the bathymetric bulges, forming the northern, eastern, southern, and western submarine flanks, are predominantly built by debris avalanche deposits at the surface.

  19. Marine neotectonic investigation of the San Gregorio Fault Zone on the northern flank of Monterey Canyon, offshore central California

    NASA Astrophysics Data System (ADS)

    Maier, K. L.; Paull, C. K.; Brothers, D. S.; McGann, M.; Caress, D. W.; Lundsten, E. M.; Anderson, K.; Gwiazda, R.

    2014-12-01

    The San Gregorio Fault Zone (SGFZ) is part of the North American-Pacific plate boundary and is thought to accommodate right-lateral offset up to 10 mm/yr. Because much of the SGFZ in Monterey Bay, central California, lies offshore in steep submarine canyon bathymetry, little is known of its recent activity. We provide initial direct evidence for faulting where the SGFZ has been interpreted based on canyon morphology to cross the northern flank of Monterey Canyon. High-resolution multibeam bathymetry and chirp subbottom profiles were acquired during 13 dives with the Monterey Bay Aquarium Research Institute's (MBARI) Autonomous Underwater Vehicle (AUV) from 2009-2014 on the northern flank of Monterey Canyon, extending from the shelf edge ~15 km offshore Santa Cruz to ~1850 m water depth. Chirp profiles resolve layered sediments up to ~40 m subsurface in this region, and no fault scarps or seafloor lineaments are visible in the 1-m resolution multibeam bathymetry. At least one subsurface fault is identified within the SGFZ by offset reflections across a discrete, nearly vertical fault. However, this fault is only imaged where mass wasting has exhumed older strata to within ~25 m of the seafloor. Numerous slumps scars on the seafloor and packages of chaotic internal reflectivity in chirp profiles suggest that submarine landslide processes dominate the study area. To constrain the age of reflections offset by the fault, MBARI's Remotely Operated Vehicle (ROV) Doc Ricketts, sampled faces of slump scars where the offset reflections crop out using vibracores and horizontal push cores. Radiocarbon dating of foraminifera within these core samples is being used to constrain the last recorded movement on the fault. Application of AUV and ROV methods allows detailed neotectonic investigation of significant offshore structures, like the SGFZ, that contribute to hazard assessment.

  20. Retroposed elements and their flanking regions resolve the evolutionary history of xenarthran mammals (armadillos, anteaters, and sloths).

    PubMed

    Möller-Krull, Maren; Delsuc, Frédéric; Churakov, Gennady; Marker, Claudia; Superina, Mariella; Brosius, Jürgen; Douzery, Emmanuel J P; Schmitz, Jürgen

    2007-11-01

    Armadillos, anteaters, and sloths (Order Xenarthra) comprise 1 of the 4 major clades of placental mammals. Isolated in South America from the other continental landmasses, xenarthrans diverged over a period of about 65 Myr, leaving more than 200 extinct genera and only 31 living species. The presence of both ancestral and highly derived anatomical features has made morphoanatomical analyses of the xenarthran evolutionary history difficult, and previous molecular analyses failed to resolve the relationships within armadillo subfamilies. We investigated the presence/absence patterns of retroposons from approximately 7,400 genomic loci, identifying 35 phylogenetically informative elements and an additional 39 informative rare genomic changes (RGCs). DAS-short interspersed elements (SINEs), previously described only in the Dasypus novemcinctus genome, were found in all living armadillo genera, including the previously unsampled Chlamyphorus, but were noticeably absent in sloths. The presence/absence patterns of the phylogenetically informative retroposed elements and other RGCs were then compared with data from the DNA sequences of the more than 12-kb flanking regions of these retroposons. Together, these data provide the first fully resolved genus tree of xenarthrans. Interestingly, multiple evidence supports the grouping of Chaetophractus and Zaedyus as a sister group to Euphractus within Euphractinae, an association that was not previously demonstrated. Also, flanking sequence analyses favor a close phylogenetic relationship between Cabassous and Tolypeutes within Tolypeutinae. Finally, the phylogenetic position of the subfamily Chlamyphorinae is resolved by the noncoding sequence data set as the sister group of Tolypeutinae. The data provide a stable phylogenetic framework for further evolutionary investigations of xenarthrans and important information for defining conservation priorities to save the diversity of one of the most curious groups of mammals.

  1. Correlation of Inter-Locus Polyglutamine Toxicity with CAG•CTG Triplet Repeat Expandability and Flanking Genomic DNA GC Content

    PubMed Central

    Nestor, Colm E.; Monckton, Darren G.

    2011-01-01

    Dynamic expansions of toxic polyglutamine (polyQ)-encoding CAG repeats in ubiquitously expressed, but otherwise unrelated, genes cause a number of late-onset progressive neurodegenerative disorders, including Huntington disease and the spinocerebellar ataxias. As polyQ toxicity in these disorders increases with repeat length, the intergenerational expansion of unstable CAG repeats leads to anticipation, an earlier age-at-onset in successive generations. Crucially, disease associated alleles are also somatically unstable and continue to expand throughout the lifetime of the individual. Interestingly, the inherited polyQ length mediating a specific age-at-onset of symptoms varies markedly between disorders. It is widely assumed that these inter-locus differences in polyQ toxicity are mediated by protein context effects. Previously, we demonstrated that the tendency of expanded CAG•CTG repeats to undergo further intergenerational expansion (their ‘expandability’) also differs between disorders and these effects are strongly correlated with the GC content of the genomic flanking DNA. Here we show that the inter-locus toxicity of the expanded polyQ tracts of these disorders also correlates with both the expandability of the underlying CAG repeat and the GC content of the genomic DNA flanking sequences. Inter-locus polyQ toxicity does not correlate with properties of the mRNA or protein sequences, with polyQ location within the gene or protein, or steady state transcript levels in the brain. These data suggest that the observed inter-locus differences in polyQ toxicity are not mediated solely by protein context effects, but that genomic context is also important, an effect that may be mediated by modifying the rate at which somatic expansion of the DNA delivers proteins to their cytotoxic state. PMID:22163004

  2. Shallow seismic imaging of flank collapse structures in oceanic island volcanoes: Application to the Western Canary Islands

    NASA Astrophysics Data System (ADS)

    Sanchez, L.; González, P.; Tiampo, K. F.

    2013-12-01

    Volcanic flank collapse counts among the many hazards associated with volcanic activity. This type of event involves the mobilization of large volumes, producing debris avalanches. It affects mostly oceanic island volcanoes, involving the potential for tsunami occurrence. Geophysical imaging can illuminate subvolcanic features such as volcano-tectonic structures, magmatic plumbing systems or differences in rock type. The most commonly used geophysical methods are gravity, electromagnetics and seismics. In particular, seismic measurements quantify anomalies in seismic waves propagation velocities and can be used to obtain information on the subsurface arrangement of different materials. In the Western Canary Islands, the Cumbre Vieja volcano in La Palma (Canary Islands) has been proposed to be near the collapse stage. Previous geophysical studies that have been carried out on the flank of the volcano comprise gravity and electromagnetic methods. These types of surveys gather information on the deep structures of the volcano (1-2 km). In this project, we complement previous studies by using seismic methods to investigate the near-surface seismic structure of the Cumbre Vieja fault system (La Palma Island) and the structure of the well-developed San Andres fault system (El Hierro Island). We aim to compare the Cumbre Vieja and San Andres fault systems to infer the degree of maturity of collapse structures. We carried out reflection and refraction seismic surveys in order to image approximately the first 10 meters of the subsurface. We used 24 low frequency (4,5 Hz) geophones as receivers and a sledge hammer as the seismic source. The survey lines were located across visible parts of the fault systems at the Cumbre Vieja volcano and the San Andres fault in El Hierro. Here, we present the survey setup and results from the preliminary analysis of the data.

  3. Mapping of a gene for familial juvenile nephronophthisis: Refining the map and defining flanking markers on chromosome 2

    SciTech Connect

    Hildebrandt, F.; Singh-Sawhney, I.; Schnieders, B.; Centofante, L.; Omran, H.; Pohlmann, A.; Schmaltz, C.; Wedekind, H.; Schubotz, D.; Brandis, M. ); Antignac, C. ); Weber, J.L. )

    1993-12-01

    Familial juvenile nephronophthisis (NPH) is an autosomal recessive kidney disease that leads to end-stage renal failure in adolescence and is associated with the formation of cysts at the cortico-medullary junction of the kidneys. NPH is responsible for about 15% of end-stage renal disease in children, as shown by Kleinknecht and Habib. NPH in combination with autosomal recessive retinitis pigmentosa is known as the Senior-Loken syndrome (SLS) and exhibits renal pathology that is identical to NPH. The authors had excluded 40% of the human genome from linkage with a disease locus for NH or SLS when Antignac et al. first demonstrated linkage for an NPH locus on chromosome 2. The authors present confirmation of linkage of an NPH locus to microsatellite markers on chromosome 2 in nine families with NPH. By linkage analysis with marker AFM262xb5 at locus D2S176, a maximum lod score of 5.05 at a [theta][sub max] = .03 was obtained. In a large NPH family that yielded at D2S176 a maximum lod score of 2.66 at [theta][sub max] = .0, markers AFM172xc3 and AFM016yc5, representing loci D2S135 and D2S110, respectively, were identified as flanking markers, thereby defining the interval for an NPH locus to a region of approximately 15 cM. Furthermore, the cytogenetic assignment of the NPH region was specified to 2p12-(2q13 or adjacent bands) by calculation of linkage between these flanking markers and markers with known unique cytogenic assignment. The refined map may serve as a genetic framework for additional genetic and physical mapping of the region. 26 refs., 3 figs., 1 tab.

  4. Cyclic Explosivity in High Elevation Phreatomagmatic Eruptions at Ocean Island Volcanoes: Implications for Aquifer Pressurization and Volcano Flank Destabilization.

    NASA Astrophysics Data System (ADS)

    Tarff, R.; Day, S. J.; Downes, H.; Seghedi, I.

    2015-12-01

    Groundwater heating and pressurization of aquifers trapped between dikes in ocean island volcanoes has been proposed as a mechanism for destabilizing and triggering large-volume flank collapses. Previous modelling has indicated that heat transfer from sustained magma flow through dikes during eruption has the potential to produce destabilizing levels of pressure on time scales of 4 to 400 days, if the aquifers remain confined. Here we revisit this proposal from a different perspective. We examine evidence for pressure variations in dike-confined aquifers during eruptions at high elevation vents on ocean island volcanoes. Initially magmatic, these eruptions change to mostly small-volume explosive phreatomagmatic activity. A recent example is the 1949 eruption on La Palma, Canary Islands. Some such eruptions involve sequences of larger-volume explosive phases or cycles, including production of voluminous low-temperature, pyroclastic density currents (PDC). Here we present and interpret data from the Cova de Paul crater eruption (Santo Antao, Cape Verde Islands). The phreatomagmatic part of this eruption formed two cycles, each culminating with eruption of PDCs. Compositional and textural variations in the products of both cycles indicate that the diatreme fill began as coarse-grained and permeable which allowed gas to escape. During the eruption, the fill evolved to a finer grained, poorly sorted, less permeable material, in which pore fluid pressures built up to produce violent explosive phases. This implies that aquifers adjacent to the feeder intrusion were not simply depressurized at the onset of phreatomagmatic explosivity but experienced fluctuations in pressure throughout the eruption as the vent repeatedly choked and emptied. In combination with fluctuations in magma supply rate, driving of aquifer pressurization by cyclical vent choking will further complicate the prediction of flank destabilization during comparable eruptions on ocean island volcanoes.

  5. High similarity between flanking regions of different microsatellites detected within each of two species of Lepidoptera: Parnassius apollo and Euphydryas aurinia.

    PubMed

    Meglecz, Emese; Petenian, Frederic; Danchin, Etienne; D'Acier, Armelle Coeur; Rasplus, Jean-Yves; Faure, Eric

    2004-06-01

    Microsatellite flanking regions have been compared in two butterfly species. Several microsatellite flanking regions showed high similarity to one another among different microsatellites within a same species, but very few similarities were found between species. This can be the consequence of either duplication/multiplication events involving large regions containing microsatellites or of microsatellites imbedded in minisatellite regions. The multiplication of microsatellites might also be linked to mobile elements. Furthermore, crossing over between nonhomologous microsatellites can lead to the exchange of the flanking regions between microsatellites. The same phenomenon was observed in both studied butterfly species but not in Aphis fabae (Hemiptera), which was screened at the same time using the same protocol. These findings might explain, at least partially, why microsatellite isolation in Lepidoptera has been relatively unsuccessful so far.

  6. Effect of Saw Palmetto Supplements on Androgen-Sensitive LNCaP Human Prostate Cancer Cell Number and Syrian Hamster Flank Organ Growth

    PubMed Central

    Opoku-Acheampong, Alexander B.; Penugonda, Kavitha; Lindshield, Brian L.

    2016-01-01

    Saw palmetto supplements (SPS) are commonly consumed by men with prostate cancer. We investigated whether SPS fatty acids and phytosterols concentrations determine their growth-inhibitory action in androgen-sensitive LNCaP cells and hamster flank organs. High long-chain fatty acids-low phytosterols (HLLP) SPS ≥ 750 nM with testosterone significantly increased and ≥500 nM with dihydrotestosterone significantly decreased LNCaP cell number. High long-chain fatty acids-high phytosterols (HLHP) SPS ≥ 500 nM with dihydrotestosterone and high medium-chain fatty acids-low phytosterols (HMLP) SPS ≥ 750 nM or with androgens significantly decreased LNCaP cell number (n = 3; p < 0.05). Five- to six-week-old, castrated male Syrian hamsters were randomized to control (n = 4), HLLP, HLHP, and HMLP SPS (n = 6) groups. Testosterone or dihydrotestosterone was applied topically daily for 21 days to the right flank organ; the left flank organ was treated with ethanol and served as the control. Thirty minutes later, SPS or ethanol was applied to each flank organ in treatment and control groups, respectively. SPS treatments caused a notable but nonsignificant reduction in the difference between left and right flank organ growth in testosterone-treated SPS groups compared to the control. The same level of inhibition was not seen in dihydrotestosterone-treated SPS groups (p < 0.05). Results may suggest that SPS inhibit 5α-reductase thereby preventing hamster flank organ growth. PMID:27272436

  7. Radiation therapy for favorable histology Wilms tumor: Prevention of flank recurrence did not improve survival on National Wilms Tumor Studies 3 and 4

    SciTech Connect

    Breslow, Norman E. . E-mail: norm@u.washington.edu; Beckwith, J. Bruce; Haase, Gerald M.; Kalapurakal, John A.; Ritchey, Michael L.; Shamberger, Robert C.; Thomas, Patrick; D'Angio, Giulio J.; Green, Daniel M.

    2006-05-01

    Purpose: To determine whether radiation therapy (RT) of patients with Wilms tumor of favorable histology prevented flank recurrence and thereby improved the survival outcomes. Methods and Materials: Recurrence and mortality risks were compared among groups of patients with Stage I-IV/favorable histology Wilms tumor enrolled in the third (n = 1,640) and fourth (n = 2,066) National Wilms Tumor Study Group studies. Results: Proportions of patients with flank recurrence were 0 of 513 = 0.0% for 20 Gy, 12 of 805 = 1.5% for 10 Gy, and 44 of 2,388 = 1.8% for no flank RT (p trend 0.001 adjusted for stage and doxorubicin); for intra-abdominal (including flank) recurrence they were 5 of 513 = 1.0%, 30 of 805 = 3.7%, and 58 of 2,388 = 2.4%, respectively (p trend = 0.02 adjusted). Survival percentages at 8 years after intra-abdominal recurrence were 0 of 5 = 0% for 20 Gy, 10 of 30 = 33% for 10 Gy, and 34 of 58 = 56% for no RT (p trend = 0.0001). NWTS-4 discontinued use of 20 Gy RT, and the 8-year flank recurrence risk increased to 2.1% from 1.0% on NWTS-3 (p = 0.013). However, event-free survival was unaltered (88% vs. 86%, p = 0.39), and overall survival was better (93.8% vs. 90.8%, p = 0.036) on NWTS-4. Conclusions: Partly because of lower postrecurrence mortality among nonirradiated patients, prevention of flank recurrence by RT did not improve survival. It is important to evaluate entire treatment policies with regard to long-term outcomes.

  8. Effect of Saw Palmetto Supplements on Androgen-Sensitive LNCaP Human Prostate Cancer Cell Number and Syrian Hamster Flank Organ Growth.

    PubMed

    Opoku-Acheampong, Alexander B; Penugonda, Kavitha; Lindshield, Brian L

    2016-01-01

    Saw palmetto supplements (SPS) are commonly consumed by men with prostate cancer. We investigated whether SPS fatty acids and phytosterols concentrations determine their growth-inhibitory action in androgen-sensitive LNCaP cells and hamster flank organs. High long-chain fatty acids-low phytosterols (HLLP) SPS ≥ 750 nM with testosterone significantly increased and ≥500 nM with dihydrotestosterone significantly decreased LNCaP cell number. High long-chain fatty acids-high phytosterols (HLHP) SPS ≥ 500 nM with dihydrotestosterone and high medium-chain fatty acids-low phytosterols (HMLP) SPS ≥ 750 nM or with androgens significantly decreased LNCaP cell number (n = 3; p < 0.05). Five- to six-week-old, castrated male Syrian hamsters were randomized to control (n = 4), HLLP, HLHP, and HMLP SPS (n = 6) groups. Testosterone or dihydrotestosterone was applied topically daily for 21 days to the right flank organ; the left flank organ was treated with ethanol and served as the control. Thirty minutes later, SPS or ethanol was applied to each flank organ in treatment and control groups, respectively. SPS treatments caused a notable but nonsignificant reduction in the difference between left and right flank organ growth in testosterone-treated SPS groups compared to the control. The same level of inhibition was not seen in dihydrotestosterone-treated SPS groups (p < 0.05). Results may suggest that SPS inhibit 5α-reductase thereby preventing hamster flank organ growth.

  9. Leakage of active crater lake brine through the north flank at Rincon de la Vieja volcano, northwest Costa Rica, and implications for crater collapse

    USGS Publications Warehouse

    Kempter, K.A.; Rowe, G.L.

    2000-01-01

    The Active Crater at Rincon de la Vieja volcano, Costa Rica, reaches an elevation of 1750 m and contains a warm, hyper-acidic crater lake that probably formed soon after the eruption of the Rio Blanco tephra deposit approximately 3500 years before present. The Active Crater is buttressed by volcanic ridges and older craters on all sides except the north, which dips steeply toward the Caribbean coastal plains. Acidic, above-ambient-temperature streams are found along the Active Crater's north flank at elevations between 800 and 1000 m. A geochemical survey of thermal and non-thermal waters at Rincon de la Vieja was done in 1989 to determine whether hyper-acidic fluids are leaking from the Active Crater through the north flank, affecting the composition of north-flank streams. Results of the water-chemistry survey reveal that three distinct thermal waters are found on the flanks of Rincon de la Vieja volcano: acid chloride-sulfate (ACS), acid sulfate (AS), and neutral chloride (NC) waters. The most extreme ACS water was collected from the crater lake that fills the Active Crater. Chemical analyses of the lake water reveal a hyper-acidic (pH ~ 0) chloride-sulfate brine with elevated concentrations of calcium, magnesium, aluminum, iron, manganese, copper, zinc, fluorine, and boron. The composition of the brine reflects the combined effects of magmatic degassing from a shallow magma body beneath the Active Crater, dissolution of andesitic volcanic rock, and evaporative concentration of dissolved constituents at above-ambient temperatures. Similar cation and anion enrichments are found in the above-ambient-temperature streams draining the north flank of the Active Crater. The pH of north-flank thermal waters range from 3.6 to 4.1 and chloride:sulfate ratios (1.2-1.4) that are a factor of two greater than that of the lake brine (0.60). The waters have an ACS composition that is quite different from the AS and NC thermal waters that occur along the southern flank of Rincon

  10. Leakage of Active Crater lake brine through the north flank at Rincón de la Vieja volcano, northwest Costa Rica, and implications for crater collapse

    NASA Astrophysics Data System (ADS)

    Kempter, K. A.; Rowe, G. L.

    2000-04-01

    The Active Crater at Rincón de la Vieja volcano, Costa Rica, reaches an elevation of 1750 m and contains a warm, hyper-acidic crater lake that probably formed soon after the eruption of the Rio Blanco tephra deposit approximately 3500 years before present. The Active Crater is buttressed by volcanic ridges and older craters on all sides except the north, which dips steeply toward the Caribbean coastal plains. Acidic, above-ambient-temperature streams are found along the Active Crater's north flank at elevations between 800 and 1000 m. A geochemical survey of thermal and non-thermal waters at Rincón de la Vieja was done in 1989 to determine whether hyper-acidic fluids are leaking from the Active Crater through the north flank, affecting the composition of north-flank streams. Results of the water-chemistry survey reveal that three distinct thermal waters are found on the flanks of Rincón de la Vieja volcano: acid chloride-sulfate (ACS), acid sulfate (AS), and neutral chloride (NC) waters. The most extreme ACS water was collected from the crater lake that fills the Active Crater. Chemical analyses of the lake water reveal a hyper-acidic ( pH˜0) chloride-sulfate brine with elevated concentrations of calcium, magnesium, aluminum, iron, manganese, copper, zinc, fluorine, and boron. The composition of the brine reflects the combined effects of magmatic degassing from a shallow magma body beneath the Active Crater, dissolution of andesitic volcanic rock, and evaporative concentration of dissolved constituents at above-ambient temperatures. Similar cation and anion enrichments are found in the above-ambient-temperature streams draining the north flank of the Active Crater. The pH of north-flank thermal waters range from 3.6 to 4.1 and chloride:sulfate ratios (1.2-1.4) that are a factor of two greater than that of the lake brine (0.60). The waters have an ACS composition that is quite different from the AS and NC thermal waters that occur along the southern flank of

  11. Surface-surface interference detection for five-axis machine tool path planning based on triangle subdivision

    NASA Astrophysics Data System (ADS)

    Lin, Feng; Deng, Xiaolei

    2011-05-01

    Interference detection between surfaces of the part and the cutting tool is important in 5-axis tool path planning process. The purpose is to ensure the tool in an interference-free posture. There are many ways to detect interference; in this article, the subdivision method is applied. In this research, a simple but high efficiency algorithm based on triangle subdivision has been developed to deal with the two spatial triangles interference detection problems. In the proposed algorithm, only the three vertex coordinates of the two spatial triangles are given. The equation of the plane on which the triangle set lies is then generated, respectively. The intersection line equation can be obtained by combining the two equations. Because of the computer truncation error, errors must have been brought into the obtained line equation. A special method, which is not sensible with the errors of the line equations, is developed to determine whether the intersection line intersects with either of the two triangles. If both are yes, then the intersection points are calculated to further determine whether the two triangles interference by setting a faraway point on the intersection line. The algorithm is efficiency as it concerns only with the solution of two plane equations; and once the none-interference condition satisfies, the algorithm could break from any step.

  12. Dynamic Spin Rig Upgraded With a Five- Axis-Controlled Three-Magnetic-Bearing Support System With Forward Excitation

    NASA Technical Reports Server (NTRS)

    Morrison, Carlos R.; Mehmed, Oral

    2003-01-01

    The NASA Glenn Research Center Dynamic Spin Rig is used for experimental evaluation of vibration analysis methods and dynamic characteristics for rotating systems. Measurements are made while rotors are spun and vibrated in a vacuum chamber. The rig has been upgraded with a new active magnetic bearing rotor support and excitation system. This design is expected to provide operational improvements over the existing rig. The rig will be able to be operated in either the old or new configuration. In the old configuration, two ball bearings support the vertical shaft of the rig, with the test article located between the bearings. Because the bearings operate in a vacuum, lubrication is limited to grease. This limits bearing life and speed. In addition, the old configuration employs two voice-coil electromagnetic shakers to apply oscillatory axial forces or transverse moments to the rotor shaft through a thrust bearing. The excitation amplitudes that can be imparted to the test article with this system are not adequate for components that are highly damped. It is expected that the new design will overcome these limitations.

  13. Preliminary Mineralogic and Stable Isotope Studies of Altered Summit and Flank Rocks and Osceola Mudflow Deposits on Mount Rainier, Washington

    USGS Publications Warehouse

    Rye, Robert O.; Breit, George N.; Zimbelman, David R.

    2003-01-01

    About 5600 years ago part of Mount Rainier?s edifice collapsed with the resultant Osceola Mudflow traveling more than 120 km and covering an area of at least 505 km2. Mineralogic and stable isotope studies were conducted on altered rocks from outcrops near the summit and east flank of the volcano and samples of clasts and matrix from the Osceola Mudflow. Results of these analyses are used to constrain processes responsible for pre-collapse alteration and provide insight into the role of alteration in edifice instability prior to the Osceola collapse event. Jarosite, pyrite, alunite, and kaolinite occur in hydrothermally altered rock exposed in summit scarps formed by edifice collapse events and in altered rock within the east-west structural zone (EWSZ) of the volcano?s east flank. Deposits of the Osceola Mudflow contain clasts of variably altered and unaltered andesite within a clay-rich matrix. Minerals detected in samples from the edifice are also present in many of the clasts. The matrix includes abundant smectite, kaolinite and variably abundant jarosite. Hydrothermal fluid compositions calculated from hydrogen and oxygen isotope data of alunite, and smectite on Mount Rainier reflect mixing of magmatic and meteoric waters. The range in the dD values of modern meteoric water on the volcano (-85 to 155?) reflect the influence of elevation on the dD of precipitation. The d34S and d18OSO4 values of alunite, gypsum and jarosite are distinct but together range from 1.7 to 17.6? and -12.3 to 15.0?, respectively; both parameters increase from jarosite to gypsum to alunite. The variations in sulfur isotope composition are attributed to the varying contributions of disproportionation of magmatic SO2, the supergene oxidation of hydrothermal pyrite and possible oxidation of H2S to the parent aqueous sulfate. The 18OSO4 values of jarosite are the lowest recorded for the mineral, consistent with a supergene origin. The mineralogy and isotope composition of alteration

  14. Window into Sediment-Buried Basement Biosphere: Fluid Sampling from CORK Observatory Seafloor Platforms, Juan de Fuca Ridge Flanks

    NASA Astrophysics Data System (ADS)

    Cowen, J. P.; Lin, H.; Rappe, M.; Jungbluth, S.; Glazer, B. T.; Matzinger, M.; Amend, J. P.; Boettger, J.

    2010-12-01

    Studies of the deep basement biosphere are technologically challenging, requiring complementary approaches to provide sufficient access to allow precision analyses and experimentation. Our NSF-funded ‘Microbial Observatory’ has focused on IODP Circulation Obviating Retrofit Kit (CORK) observatories to obtain pristine samples of fluids from sediment-buried basement environments. We have developed instruments and samplers to interface with CORK fluid delivery lines, including a ROV/HOV-borne Mobile Pumping System and autonomous (e.g., GeoMICROBE) instrument sensor/sampler systems. These systems are providing high quality (e.g., depleted Mg++, <6 mM) samples of basement fluids from 3.5 mA old upper basement, on the flanks of the Juan de Fuca Ridge, for geochemical and microbial studies. Relative to bottom seawater, these fluids are also depleted in O2, SO42-, PO43-, NO3- and NO2-, while enriched in NH4+, H2S, Mn and Fe. In situ voltammetric analyses obtained during sample collection, revealed the presence of micromolar levels of sulfide (0.5 µm) in the fluids. Dissolved organic carbon in basement fluids is about half that of local bottom seawater, low molecular weight organic acids are below detection limits, while total amino acids are also low in concentration, but the relative abundance of specific amino acids varies from that of bottom seawater. Overall, the sediment-buried basement environments appears to be organic-carbon depleted and low energy, yet still dynamic. The microbial communities from CORK 1301A (47deg 45N, 127deg 45W) in consecutive years are heterogeneous, but share common groups. Different CORKs sampled a decade apart share major lineages, consistent with hydrogeologic connectivity. Samples collected from a new CORK installation at borehole 1026B contain a subset of members found a decade previously from an older style CORK at the same site. Communities retrieved from the CORK at 1025C (47deg 53N, 128deg 39W), in 1.4 My ridge flank basement

  15. Cloning of insertion site flanking sequence and construction of transfer DNA insert mutant library in Stylosanthes colletotrichum.

    PubMed

    Chen, Helong; Hu, Caiping; Yi, Kexian; Huang, Guixiu; Gao, Jianming; Zhang, Shiqing; Zheng, Jinlong; Liu, Qiaolian; Xi, Jingen

    2014-01-01

    Stylosanthes sp. is the most important forage legume in tropical areas worldwide. Stylosanthes anthracnose, which is mainly caused by Colletotrichum gloeosporioides, is a globally severe disease in stylo production. Little progress has been made in anthracnose molecular pathogenesis research. In this study, Agrobacterium tumefaciens-mediated transformation was used to transform Stylosanthes colletotrichum strain CH008. The major factors of the genetic transformation system of S. colletotrichum were optimized as follows: A. tumefaciens' AGL-1 concentration (OD(600)), 0.8; concentration of Colletotrichum conidium, 1 × 10(6) conidia/mL; acetosyringone concentration, 100 mmol/L; induction time, 6 h; co-culture temperature, 25 °C; and co-culture time, 3 d. Thus, the transformation efficiency was increased to 300-400 transformants per 106 conidia. Based on the optimized system, a mutant library containing 4616 mutants was constructed, from which some mutants were randomly selected for analysis. Results show that the mutants were single copies that could be stably inherited. The growth rate, spore amount, spore germination rate, and appressorium formation rate in some mutants were significantly different from those in the wild-type strain. We then selected the most appropriate method for the preliminary screening and re-screening of each mutant's pathogenic defects. We selected 1230 transformants, and obtained 23 strains with pathogenic defects, namely, 18 strains with reduced pathogenicity and five strains with lost pathogenicity. Thermal asymmetric interlaced PCR was used to identify the transfer DNA (T-DNA) integration site in the mutant that was coded 2430, and a sequence of 476 bp was obtained. The flanking sequence of T-DNA was compared with the Colletotrichum genome by BLAST, and a sequence of 401 bp was found in Contig464 of the Colletotrichum genome. By predicting the function of the flanking sequence, we discovered that T-DNA insertion in the promoter region

  16. Flank collapse at Mount Wrangell, Alaska, recorded by volcanic mass-flow deposits in the Copper River lowland

    USGS Publications Warehouse

    Waythomas, C.F.; Wallace, K.L.

    2002-01-01

    An areally extensive volcanic mass-flow deposit of Pleistocene age, known as the Chetaslina volcanic mass-flow deposit, is a prominent and visually striking deposit in the southeastern Copper River lowland of south-central Alaska. The mass-flow deposit consists of a diverse mixture of colorful, variably altered volcanic rocks, lahar deposits, glaciolacustrine diamicton, and till that record a major flank collapse on the southwest flank of Mount Wrangell. The deposit is well exposed near its presumed source, and thick, continuous, stratigraphic exposures have permitted us to study its sedimentary characteristics as a means of better understanding the origin, significance, and evolution of the deposit. Deposits of the Chetaslina volcanic mass flow in the Chetaslina River drainage are primary debris-avalanche deposits and consist of two principal facies types, a near-source block facies and a distal mixed facies. The block facies is composed entirely of block-supported, shattered and fractured blocks with individual blocks up to 40 m in diameter. The mixed facies consists of block-sized particles in a matrix of poorly sorted rock rubble, sand, and silt generated by the comminution of larger blocks. Deposits of the Chetaslina volcanic mass flow exposed along the Copper, Tonsina, and Chitina rivers are debris-flow deposits that evolved from the debris-avalanche component of the flow and from erosion and entrainment of local glacial and glaciolacustrine diamicton in the Copper River lowland. The debris-flow deposits were probably generated through mixing of the distal debris avalanche with the ancestral Copper River, or through breaching of a debris-avalanche dam across the ancestral river. The distribution of facies types and major-element chemistry of clasts in the deposit indicate that its source was an ancestral volcanic edifice, informally known as the Chetaslina vent, on the southwest side of Mount Wrangell. A major sector collapse of the Chetaslina vent initiated

  17. Neogene Basin Evolution Along the Northern Flank of the Papuan Peninsula, Goodenough Bay, Eastern Papua New Guinea

    NASA Astrophysics Data System (ADS)

    Horton, B. K.; Gillis, R. J.; Mann, P.

    2009-12-01

    Although large-magnitude extension in the Woodlark Rift of eastern Papua New Guinea (PNG) and the D’Entrecasteaux Islands has been addressed through previous research on the late Cenozoic structure and cooling history of metamorphic domes, few studies have evaluated the exhumational record contained within adjacent sedimentary basins. Onshore exposures of Neogene basin fill in PNG along the northern flank of the Papuan peninsula (east of the Dayman metamorphic dome and west-southwest of the domes of the D’Entrecasteaux Islands) provide a record of basin evolution prior to and during growth of the active spreading center that defines the boundary between the Australian plate and Woodlark microplate. Along the northern margin of the Papuan peninsula, a collection of lithofacies associations consisting of sandstone and subordinate conglomerate and mudstone represent deposition in bottomset, foreset, and topset subenvironments in a series of marine Gilbert-type deltas. Internal angular unconformities within the basin-fill succession indicate slope instability likely related to syndepositional deformation. This deformation is attributed to principally down-to-the north motion along extensional and strike-slip structures bordering the northern margin of Papuan peninsula, notably the ESE-striking Goodenough fault zone. Small-scale folding is interpreted as the product of late Miocene to Quaternary fault-related folding in an extensional setting, although we cannot rule out possible contraction coeval with significant collision-related shortening on the southern flank of the Papuan peninsula within the south-directed Papuan fold-thrust belt. Differences in sandstone petrographic results for the northern margin of the Papuan peninsula and the smaller Vogel peninsula suggest a multiphase history of basin evolution, with early Neogene subsidence of uncertain origin and late Neogene subsidence linked to regional extension. The timing of basin evolution will be assessed

  18. Cloning of Insertion Site Flanking Sequence and Construction of Transfer DNA Insert Mutant Library in Stylosanthes Colletotrichum

    PubMed Central

    Huang, Guixiu; Gao, Jianming; Zhang, Shiqing; Zheng, Jinlong; Liu, Qiaolian; Xi, Jingen

    2014-01-01

    Stylosanthes sp. is the most important forage legume in tropical areas worldwide. Stylosanthes anthracnose, which is mainly caused by Colletotrichum gloeosporioides, is a globally severe disease in stylo production. Little progress has been made in anthracnose molecular pathogenesis research. In this study, Agrobacterium tumefaciens-mediated transformation was used to transform Stylosanthes colletotrichum strain CH008. The major factors of the genetic transformation system of S. colletotrichum were optimized as follows: A. tumefaciens’ AGL-1 concentration (OD600), 0.8; concentration of Colletotrichum conidium, 1×106 conidia/mL; acetosyringone concentration, 100 mmol/L; induction time, 6 h; co-culture temperature, 25°C; and co-culture time, 3 d. Thus, the transformation efficiency was increased to 300–400 transformants per 106 conidia. Based on the optimized system, a mutant library containing 4616 mutants was constructed, from which some mutants were randomly selected for analysis. Results show that the mutants were single copies that could be stably inherited. The growth rate, spore amount, spore germination rate, and appressorium formation rate in some mutants were significantly different from those in the wild-type strain. We then selected the most appropriate method for the preliminary screening and re-screening of each mutant’s pathogenic defects. We selected 1230 transformants, and obtained 23 strains with pathogenic defects, namely, 18 strains with reduced pathogenicity and five strains with lost pathogenicity. Thermal asymmetric interlaced PCR was used to identify the transfer DNA (T-DNA) integration site in the mutant that was coded 2430, and a sequence of 476 bp was obtained. The flanking sequence of T-DNA was compared with the Colletotrichum genome by BLAST, and a sequence of 401 bp was found in Contig464 of the Colletotrichum genome. By predicting the function of the flanking sequence, we discovered that T-DNA insertion in the promoter region of

  19. Flanking Polyproline Sequences Inhibit [beta]-Sheet Structure in Polyglutamine Segments by Inducing PPII-like Helix Structure

    SciTech Connect

    Darnell, Gregory; Orgel, Joseph P.R.O.; Pahl, Reinhard; Meredith, Stephen C.

    2008-06-24

    Polyglutamine (poly(Q)) expansion is associated with protein aggregation into {beta}-sheet amyloid fibrils and neuronal cytotoxicity. In the mutant poly(Q) protein huntingtin, associated with Huntington's disease, both aggregation and cytotoxicity may be abrogated by a polyproline (poly(P)) domain flanking the C terminus of the poly(Q) region. To understand structural changes that may occur with the addition of the poly(P) sequence, we synthesized poly(Q) peptides with 3-15 glutamine residues and a corresponding set of poly(Q) peptides flanked on the C terminus by 11 proline residues (poly(Q)-poly(P)), as occurs in the huntingtin sequence. The shorter soluble poly(Q) peptides (three or six glutamine residues) showed polyproline type II-like (PPII)-like helix conformation when examined by circular dichroism spectroscopy and were monomers as judged by size-exclusion chromatography (SEC), while the longer poly(Q) peptides (nine or 15 glutamine residues) showed a {beta}-sheet conformation by CD and defined oligomers by SEC. Soluble poly(Q)-poly(P) peptides showed PPII-like content but SEC showed poorly defined, overlapping oligomeric peaks, and as judged by CD these peptides retained significant PPII-like structure with increasing poly(Q) length. More importantly, addition of the poly(P) domain increased the threshold for fibril formation to {approx} 15 glutamine residues. X-ray diffraction, electron microscopy, and film CD showed that, while poly(Q) peptides with {ge} 6 glutamine residues formed {beta}-sheet-rich fibrils, only the longest poly(Q)-poly(P) peptide (15 glutamine residues) did so. From these and other observations, we propose that poly(Q) domains exist in a 'tug-of-war' between two conformations, a PPII-like helix and a {beta}-sheet, while the poly(P) domain is conformationally constrained into a proline type II helix (PPII). Addition of poly(P) to the C terminus of a poly(Q) domain induces a PPII-like structure, which opposes the aggregation-prone {beta

  20. Controls on erosional retreat of the uplifted rift flanks at the Gulf of Suez and northern Red Sea

    NASA Technical Reports Server (NTRS)

    Steckler, Michael S.; Omar, Gomaa I.

    1994-01-01

    The Gulf of Suez and the Red Sea rigts are currently bordered by large asymmetric uplifts that are undergoing erosion. We find that the amount and timing of erosion vary systematically along the strike of the margin and have been controlled by variations in the perift stratigraphy. The perfit strata are compsoed of cliff-forming Eocene-Cretaceous carbonates overlaying the easily eroded Cretaceous-Cambrian 'Nubian' sandstone. This lithologic succession promotes scarp retreat of the sedimentary section, follwed by dissection of the underlying basement. The perift section thins from over 2000 m at the northern end of the rift to less htan 400 m at its junction with the Red Sea. Thus, at the northern part of the Gulf of Suez, the Nubian sandstone is minimally exposed, and the carbonates form a scarp at the rift border fault. Farther south, undercuttin of hte carbonates by erosion of the sandstion has resulted in scarp retreat. The escarpment cuts diagonally away from the border fault andis over 100 km inland from the border fault at the southernmost Gulf of Suez. The amount of retreat varies inversely with the sediment thickness. Exposure and erosion of basement are initiated by the retreate of the escarpment, and the depth of erosion, as indicated by fission track ages, increases with distance from the escarpment. These observations are explained by a model in which erosion along the Gulf of Suez is initiated as rift flank uplift becomes sufficiently large ot expose the friable sandstones. Undercutting the escarpment and exhumation of basement has been propagating northward and westward for at least 20 m.y. The average rate of scarp retreat has been 6 km/m.y. and the along-strike propagation of the erosion has been 12 km/m.y. The diachronous erosion of the rift flanks at the Gulf of Suez highlights the importance of distinguishing between the timing of uplift and of erosion. Both thermochronometric and stratigraphic data primarily indicate the timing of erosion, which

  1. Flank instability assessment at Kick-'em-Jenny submarine volcano (Grenada, Lesser Antilles): a multidisciplinary approach using experiments and modeling

    NASA Astrophysics Data System (ADS)

    Dondin, F. J.-Y.; Heap, M. J.; Robertson, R. E. A.; Dorville, J.-F. M.; Carey, S.

    2017-01-01

    Kick-'em-Jenny (KeJ)—located ca. 8 km north of the island of Grenada—is the only active submarine volcano of the Lesser Antilles Volcanic Arc. Previous investigations of KeJ revealed that it lies within a collapse scar inherited from a past flank instability episode. To assess the likelihood of future collapse, we employ here a combined laboratory and modeling approach. Lavas collected using a remotely operated vehicle (ROV) provided samples to perform the first rock physical property measurements for the materials comprising the KeJ edifice. Uniaxial and triaxial deformation experiments showed that the dominant failure mode within the edifice host rock is brittle. Edifice fractures (such as those at Champagne Vent) will therefore assist the outgassing of the nearby magma-filled conduit, favoring effusive behavior. These laboratory data were then used as input parameters in models of slope stability. First, relative slope stability analysis revealed that the SW to N sector of the volcano displays a deficit of mass/volume with respect to a volcanoid (ideal 3D surface). Slope stability analysis using a limit equilibrium method (LEM) showed that KeJ is currently stable, since all values of stability factor or factor of safety (Fs) are greater than unity. The lowest values of Fs were found for the SW-NW sector of the volcano (the sector displaying a mass/volume deficit). Although currently stable, KeJ may become unstable in the future. Instability (severe reductions in Fs) could result, for example, from overpressurization due to the growth of a cryptodome. Our modeling has shown that instability-induced flank collapse will most likely initiate from the SW-NW sector of KeJ, therefore mobilizing a volume of at least ca. 0.7 km3. The mobilization of ca. 0.7 km3 of material is certainly capable of generating a tsunami that poses a significant hazard to the southern islands of the West Indies.

  2. Swapped green algal promoters: aphVIII-based gene constructs with Chlamydomonas flanking sequences work as dominant selectable markers in Volvox and vice versa.

    PubMed

    Hallmann, A; Wodniok, S

    2006-06-01

    Production of transgenic organisms is a well-established, versatile course of action in molecular biology. Genetic engineering often requires heterologous, dominant antibiotic resistance genes that have been used as selectable markers in many species. However, as heterologous 5' and 3' flanking sequences often result in very low expression rates, endogenous flanking sequences, especially promoters, are mostly required and are easily obtained in model organisms, but it is much more complicated and time-consuming to get appropriate sequences from less common organisms. In this paper, we show that aminoglycoside 3'-phosphotransferase gene (aphVIII) based constructs with 3' and 5' untranslated flanking sequences (including promoters) from the multicellular green alga Volvox work in the unicellular green alga Chlamydomonas and flanking sequences from Chlamydomonas work in Volvox, at least if a low expression rate is compensated by an enforced high gene dosage. This strategy might be useful for all investigators that intend to transform species in which genomic sequences are not available, but sequences from related organisms exist.

  3. New Observations of Glacial Features on the Lower NW Flank of Hecates Tholus Volcano (Mars) Based on CTX and HiRISE Images

    NASA Astrophysics Data System (ADS)

    de Pablo, M. A.; Centeno, J. D.

    2011-03-01

    HiRISE and CTX images of the NW flank of Hecates Tholus volcano, Mars, show abundant evidence of a present or recent glacier: crevasses, morraines, eskers, etc. Here we made aN inventory of all these features and a general interpretation of their origin.

  4. East flank of the Sibumasu block in NW Thailand and Myanmar and its possible northward continuation into Yunnan: a review and suggested tectono-stratigraphic interpretation

    NASA Astrophysics Data System (ADS)

    Ridd, Michael F.

    2015-05-01

    The east flank of the Sibumasu block was a passive continental margin, and in NW Thailand is marked by the absence of the autochthonous Middle Permian-Triassic platform carbonates which are widespread across the rest of Sibumasu further west. Instead, the carbonates are represented by hemipelagic cherts, mudstones and sandstones including turbidites. During the northward drift of Sibumasu, following its Early Permian rifting from Gondwana, an accretionary complex was present where Palaeotethyan pelagic rocks as old as Devonian were subducted beneath the Sukhothai volcanic arc. At the time of Sibumasu's collision with the Sukhothai arc, beginning in the Middle Triassic, the accretionary complex was thrust westwards across the east flank of Sibumasu. It is suggested that in the Late Triassic the thrust pile which had been the accretionary complex underwent erosion and was the source of terrigenous clastic rocks deposited further west in a foredeep basin. The boundary of Sibumasu's east flank with the Permo-Triassic carbonate platform further west is the arcuate Mae Ping-Nam Teng Fault system. Notwithstanding later Cenozoic strike-slip displacement, those faults (as well as the Mae Yuam Fault) are interpreted to have had an earlier history of westward-directed Indosinian thrusting. Northwards in Myanmar and Yunnan the Sibumasu Permo-Triassic carbonate shelf continues as the Shan Plateau and Baoshan Block. The east flank is represented by the Changning-Menglian Belt, and the Palaeotethys 'cryptic suture' in Thailand possibly joins with the Lancangjiang Suture.

  5. Sequence analysis of a group of low molecular-weight plasmids carrying multiple IS903 elements flanking a kanamycin resistance aph gene in Salmonella enterica serovars

    Technology Transfer Automated Retrieval System (TEKTRAN)

    A group of low molecular-weight ColE1-like plasmids carrying the aph sequence type aph(ii), from three different Salmonella serovars were sequenced. These plasmids carry 2 or more copies of IS903 elements, with up to 21 bp sequence differences to one another, two of which flank the aph gene. This g...

  6. Insight from Laboratory Experiments on the Generation of Granular Flows on the Flanks of Vibrated Pyroclastic Cones

    NASA Astrophysics Data System (ADS)

    Cagnoli, B.; Romano, G. P.; Ventura, G.

    2015-12-01

    We have carried out laboratory experiments to study the generation of granular flows on the slopes of pyroclastic cones that are experiencing volcanic tremor or tectonic earthquakes. These experiments are inspired by the occurrence of granular flows on the flanks of Mount Vesuvius during its 1944 eruption. Our laboratory model consists of sand cones built around a vibrating tube which represents a volcanic conduit with erupting magma inside. A video camera allows the study of the granular flow inception, movement and deposition. Although the collapse of the entire cone is obtained at a specific resonance frequency, individual granular flows can be generated by all the vibration frequencies and all the vibration amplitudes that our experimental apparatus has allowed us to adopt. We believe that this is due to the fact that the energy threshold to generate the flows is small in value. Therefore, if this is true in nature as well, shaken pyroclastic cones are always potentially dangerous because they can easily generate flows that can strike the surrounding areas.

  7. Shaking of pyroclastic cones and the formation of granular flows on their flanks: Results from laboratory experiments

    NASA Astrophysics Data System (ADS)

    Cagnoli, B.; Romano, G. P.; Ventura, G.

    2015-11-01

    We have carried out laboratory experiments to study the generation of granular flows on the slopes of pyroclastic cones that are experiencing volcanic tremor or tectonic earthquakes. These experiments are inspired by the occurrence of granular flows on the flanks of Mount Vesuvius during its 1944 eruption. Our laboratory model consists of sand cones built around a vibrating tube which represents a volcanic conduit with erupting magma inside. A video camera allows the study of the granular flow inception, movement and deposition. Although the collapse of the entire cone is obtained at a specific resonance frequency, single granular flows can be generated by all the vibration frequencies (1-16 Hz) and all the vibration amplitudes (0.5-1.5 mm) that our experimental apparatus has allowed us to adopt. We believe that this is due to the fact that the energy threshold to trigger the flows is small in value. Therefore, if this is true in nature as well, shaken pyroclastic cones are always potentially dangerous because they can easily generate flows that can strike the surrounding areas.

  8. Characterization of the 5' flanking region of lipase gene from Penicillium expansum and its application in molecular breeding.

    PubMed

    Zhang, Tian; Peng, Ying; Yu, Qingsheng; Wang, Jieliang; Tang, Kexuan

    2014-01-01

    A major challenge for further promotion of lipase productivity in Penicillium expansum PE-12 is to find a suitable promoter that can function efficiently in this industrial strain. In this study, the 5' flanking region of P. expansum lipase (Ppel) containing a putative novel promoter sequence was characterized by fusing to β-glucuronidase (GUS) and subsequently introducing into P. expansum. As a result, all the transformants showed blue color quickly after incubation in GUS detection buffer, suggesting a strong promoter activity of this fragment. Glucose repression was identified for the promoter, whereas olive oil acted as a positive regulator. Facilitated by this novel promoter, P. expansum PE-12 was genetically modified, with an improved lipase yield, via a recombinant plasmid with P. expansum lipase gene (PEL) under the control of Ppel promoter and TtrpC terminator. The highest lipase yield among the modified strains could attain 2,100 U/mL, which is more than twofold of the previous industrial strain (900 U/mL). The engineered strain through molecular breeding method as well as this new promoter has great value in lipase industry.

  9. Diversity and Metabolic Potentials of Subsurface Crustal Microorganisms from the Western Flank of the Mid-Atlantic Ridge.

    PubMed

    Zhang, Xinxu; Feng, Xiaoyuan; Wang, Fengping

    2016-01-01

    Deep-sea oceanic crust constitutes the largest region of the earth's surface. Accumulating evidence suggests that unique microbial communities are supported by iron cycling processes, particularly in the young (<10 million-year old), cool (<25°C) subsurface oceanic crust. To test this hypothesis, we investigated the microbial abundance, diversity, and metabolic potentials in the sediment-buried crust from "North Pond" on western flank of the Mid-Atlantic Ridge. Three lithologic units along basement Hole U1383C were found, which typically hosted ∼10(4) cells cm(-3) of basaltic rock, with higher cell densities occurring between 115 and 145 m below seafloor. Similar bacterial community structures, which are dominated by Gammaproteobacterial and Sphingobacterial species closely related to iron oxidizers, were detected regardless of variations in sampling depth. The metabolic potentials of the crust microbiota were assayed by metagenomic analysis of two basalt enrichments which showed similar bacterial structure with the original sample. Genes coding for energy metabolism involved in hydrocarbon degradation, dissimilatory nitrate reduction to ammonium, denitrification and hydrogen oxidation were identified. Compared with other marine environments, the metagenomes from the basalt-hosted environments were enriched in pathways for Fe(3+) uptake, siderophore synthesis and uptake, and Fe transport, suggesting that iron metabolism is an important energy production and conservation mechanism in this system. Overall, we provide evidence that the North Pond crustal biosphere is dominated by unique bacterial groups with the potential for iron-related biogeochemical cycles.

  10. Molecular Interaction between the Chaperone Hsc70 and the N-terminal Flank of Huntingtin Exon 1 Modulates Aggregation*

    PubMed Central

    Monsellier, Elodie; Redeker, Virginie; Ruiz-Arlandis, Gemma; Bousset, Luc; Melki, Ronald

    2015-01-01

    The aggregation of polyglutamine (polyQ)-containing proteins is at the origin of nine neurodegenerative diseases. Molecular chaperones prevent the aggregation of polyQ-containing proteins. The exact mechanism by which they interact with polyQ-containing, aggregation-prone proteins and interfere with their assembly is unknown. Here we dissect the mechanism of interaction between a huntingtin exon 1 fragment of increasing polyQ lengths (HttEx1Qn), the aggregation of which is tightly associated with Huntington's disease, and molecular chaperone Hsc70. We show that Hsc70, together with its Hsp40 co-chaperones, inhibits HttEx1Qn aggregation and modifies the structural, seeding, and infectious properties of the resulting fibrils in a polyQ-independent manner. We demonstrate that Hsc70 binds the 17-residue-long N-terminal flank of HttEx1Qn, and we map Hsc70-HttEx1Qn surface interfaces at the residue level. Finally, we show that this interaction competes with homotypic interactions between the N termini of different HttEx1Qn molecules that trigger the aggregation process. Our results lay the foundations of future therapeutic strategies targeting huntingtin aggregation in Huntington disease. PMID:25505179

  11. Flanking nuclear matrix attachment regions synergize with the T cell receptor δ enhancer to promote V(D)J recombination

    PubMed Central

    Zhong, Xiao-Ping; Carabaña, Juan; Krangel, Michael S.

    1999-01-01

    Previous studies have identified nuclear matrix attachment regions (MARs) that are closely associated with transcriptional enhancers in the IgH, Igκ, and T cell receptor (TCR) β loci, but have yielded conflicting information regarding their functional significance. In this report, a combination of in vitro and in situ mapping approaches was used to localize three MARs associated with the human TCR δ gene. Two of these are located within the Jδ3–Cδ intron, flanking the core TCR δ enhancer (Eδ) both 5′ and 3′ in a fashion reminiscent of the Ig heavy chain intronic enhancer-associated MARs. The third is located about 20 kb upstream, tightly linked to Dδ1 and Dδ2. We have previously used a transgenic minilocus V(D)J recombination reporter to establish that Eδ functions as a developmental regulator of V(D)J recombination, and that it does so by modulating substrate accessibility to the V(D)J recombinase. We show here that the Eδ-associated MARs function synergistically with the core Eδ to promote V(D)J recombination in this system, as they are required for enhancer-dependent transgene rearrangement in single-copy transgene integrants. PMID:10518560

  12. New insights into the last deglaciation of the south-eastern flank of the Scandinavian Ice Sheet

    NASA Astrophysics Data System (ADS)

    Bitinas, Albertas

    2012-06-01

    The existing glaciodynamic paradigm used to explain the dynamics, morphogenesis, and deglaciation of the last Scandinavian Ice Sheet (SIS) does not satisfactorily reflect all the nuances of ice sheet dynamics, formation of particular forms of glacial relief, and details of deglaciation. Significant problems are to be found in the explanations proposed for the processes of deglaciation. Therefore a new theory for the deglaciation of the last SIS, based on new geochronological, geological, and geomorphological data has been developed and is presented here. It is suggested that along the south-eastern perimeter of the SIS, with the exception of the Salpausselkä moraine ridges, there is no evidence anywhere for re-advances of the SIS during deglaciation. Apart from the Salpausselkä moraine ridges the evidence for so-called 'stadial' or 'phasial' recessional events is interpreted as the result of SIS surges that occurred at different times and positions along the ice sheet margin. This new theory also proposes that deglaciation of the south-eastern flank of the SIS was dominated by surface thinning rather than marginal retreat. Characteristic landforms such as kame terraces located on the distal slopes of recessional marginal ridges and plateau-like glaciolacustrine kames, were developed during deglaciation probably due to the interaction of active ice lobes (surges) and masses of dead ice that persisting beyond the ice margin.

  13. Definition of a lipopolysaccharide-responsive element in the 5'-flanking regions of MuRantes and crg-2.

    PubMed Central

    Shin, H S; Drysdale, B E; Shin, M L; Noble, P W; Fisher, S N; Paznekas, W A

    1994-01-01

    Macrophages are stimulated by lipopolysaccharide (LPS) of gram-negative organisms. The changes in LPS-stimulated macrophages include transcriptional activation of multiple immediate-early genes, which may contribute to the natural immunity to microorganisms. We have defined by deletion and mutational analysis LPS-responsive elements (LREs) in two chemokine genes, MuRantes and crg-2, which are activated in an immediate-early manner. LRE consists of two motifs, TCAYR, which is an AP-1 half site with two flanking bases, and (A/T) (G/C)NTTYC(A/T)NTTY, which resembles in part the interferon-stimulated responsive element (ISRE). The orientation of these two motifs relative to each other in MuRantes differed from that in crg-2. These two motifs are separated by 10 and 6 nonconsensus nucleotides in the MuRantes and crg-2 LREs, respectively. Stimulation of macrophage-like RAW 264.7 cells with alpha/beta interferon did not activate MuRantes, indicating that the ISRE-like motif in MuRantes does not have ISRE activity. Upon stimulation of RAW 264.7 cells with LPS, proteins capable of binding to LRE accumulate in the nuclei as measured by electrophoretic mobility shift assay. These LRE-binding proteins include c-Jun and CREB. Images PMID:7513046

  14. A novel PCR technique using Alu-specific primers to identify unknown flanking sequences from the human genome

    SciTech Connect

    Minami, M.; Poussin, K.; Brechot, C.; Paterlini, P.

    1995-09-20

    The rapid and reproducible identification of new cellular DNA sequences is difficult to achieve with the currently available procedures. Here we describe a novel approach based on the polymerase chain reaction (PCR) using a primer specific to the known sequence and another directed to a human Alu repeat. To avoid undesirable amplifications between Alu sequences, primers are constructed with dUTPs and destroyed by uracil DNA glycosylase treatment after 10 initial cycles of amplification. Only desirable fragments are then further amplified with specific primers to the known region and to a tag sequence introduced in the Alu-specific primer. Using this protocol, we have successfully indentified cellular sequences flanking integrated hepatitis B virus DNA from the human genome of three hepatoma tissues. The method enables a direct specific amplification without any ligation or nonspecific annealing steps as required by previous PCR-based protocols. This rapid and straightforward approach will be a powerful tool for the study of viral integration sites, but is also widely applicable to other studies of the human genome. 39 refs., 4 figs.

  15. Tightly linked flanking microsatellite markers for the Usher syndrome type I locus on the short arm of chromosome 11

    SciTech Connect

    Keats, B.J.B.; Nouri, N.; Pelias, M.Z.; Deininger, P.L. ); Litt, M. )

    1994-04-01

    Usher syndrome type I is an autosomal recessive disease characterized by profound congenital hearing impairment and vestibular dysfunction followed by the onset of progressive pigmentary retinopathy in childhood or early adolescence. A locus (USH1C) for one form of this disease was previously assigned to the short arm of chromosome 11 through linkage studies in the Acadian population of southwestern Louisiana. Linkage analyses of a set of microsatellite markers in 27 Acadian families provide evidence that USH1C lies between D11S861 and D11S928. Three markers (D11S419, D11S921, and D11S899) that lie between the flanking markers show no recombination with USH1C, and all 54 chromosomes with the abnormal allele at the disease locus have identical alleles for D11S419 and D11S921. This haplotype was found on only 10 of 50 chromosomes with the normal allele at the disease locus, suggesting a strong founder effect. Of the 54 chromosomes with the abnormal allele, 12 had a divergent allele at D11S899. These results suggest that USH1C is in the 2-3-cM interval between D11S861 and D11S899. 16 refs., 2 figs., 3 tabs.

  16. The NlaIV restriction and modification genes of Neisseria lactamica are flanked by leucine biosynthesis genes.

    PubMed

    Lau, P C; Forghani, F; Labbé, D; Bergeron, H; Brousseau, R; Höltke, H J

    1994-04-01

    The genes encoding the Neisseria lactamica restriction endonuclease IV (R.NlaIV) and its cognate DNA methyltransferase (M.NlaIV), both of which recognize the sequence GGNNCC, have been cloned in Escherichia coli and overexpressed using the T7 polymerase/promoter system. Analysis of a sequenced 3.58 kb fragment established the gene order, leuD-M.NlaIV-R.NlaIV-leuB. The predicted primary sequence of M.NlaIV (423 amino acids) shows the highest degree of identity to a pair of cytosine-specific methyltransferases, M.BanI (44.9%) and M.HgiCI (44.3%), which recognize the sequence GGYRCC (Y, pyrimidines; R, purines). In contrast, the R.NlaIV protein sequence (243 amino acids) is unique in the existing data-base, a situation that holds for most endonucleases. Flanking the NlaIV modification and restriction genes are homologues of the leuD and leuB genes of enteric bacteria, which code for enzymes in the leucine biosynthesis pathway. This gene context implies a possible new mode of gene regulation for the RM.NlaIV system, which would involve a mechanism similar to the recently discovered leucine/Lrp regulon in E. coli.

  17. Diversity and Metabolic Potentials of Subsurface Crustal Microorganisms from the Western Flank of the Mid-Atlantic Ridge

    PubMed Central

    Zhang, Xinxu; Feng, Xiaoyuan; Wang, Fengping

    2016-01-01

    Deep-sea oceanic crust constitutes the largest region of the earth’s surface. Accumulating evidence suggests that unique microbial communities are supported by iron cycling processes, particularly in the young (<10 million-year old), cool (<25°C) subsurface oceanic crust. To test this hypothesis, we investigated the microbial abundance, diversity, and metabolic potentials in the sediment-buried crust from “North Pond” on western flank of the Mid-Atlantic Ridge. Three lithologic units along basement Hole U1383C were found, which typically hosted ∼104 cells cm-3 of basaltic rock, with higher cell densities occurring between 115 and 145 m below seafloor. Similar bacterial community structures, which are dominated by Gammaproteobacterial and Sphingobacterial species closely related to iron oxidizers, were detected regardless of variations in sampling depth. The metabolic potentials of the crust microbiota were assayed by metagenomic analysis of two basalt enrichments which showed similar bacterial structure with the original sample. Genes coding for energy metabolism involved in hydrocarbon degradation, dissimilatory nitrate reduction to ammonium, denitrification and hydrogen oxidation were identified. Compared with other marine environments, the metagenomes from the basalt-hosted environments were enriched in pathways for Fe3+ uptake, siderophore synthesis and uptake, and Fe transport, suggesting that iron metabolism is an important energy production and conservation mechanism in this system. Overall, we provide evidence that the North Pond crustal biosphere is dominated by unique bacterial groups with the potential for iron-related biogeochemical cycles. PMID:27047476

  18. Functional characterization of the 5' flanking region of human ubiquitin fusion degradation 1 like gene (UFD1L).

    PubMed

    Amati, Francesca; Conti, Emanuela; Botta, Annalisa; Amicucci, Paola; Dallapiccola, Bruno; Novelli, Giuseppe

    2002-06-01

    UFD1L (Ubiquitin Fusion Degradation 1 Like) gene encodes for a component of a multi-complex involved in the degradation of ubiquitin fusion proteins. The gene maps on chromosome 22q11, in a region commonly deleted in severe congenital disorders such as DiGeorge (DGS) and velo-cardio-facial (VCFS) syndromes. UFD1L is a single copy gene ubiquitously expressed in high levels in the pharyngeal pouches and fourth branchial arch artery during development. To understand the regulation of UFD1L expression we performed a functional analysis of its 5' regulatory region. 5'-RACE and primer extension analyses revealed the presence of different transcription start sites in adult and fetal tissues. UFD1L 5' flanking region contains a TATA-box motif and is also very GC-rich with a CpG island encompassing exon 1. Transcriptional activity of this region was examined by transfection experiments of promoter-GFP reporter gene constructs in a human epithelial cell line. These experiments revealed the importance of the region between -17 and -463 nt which contains the TATA-box. EMSA assay resulted in the detection of five functional consensus sequences respectively for the transcription complex TFIID and for the transcription factors AP-1 (one site), AP-2 (one) and Sp1 (two).

  19. Replication fork progression is paused in two large chromosomal zones flanking the DNA replication origin in Escherichia coli.

    PubMed

    Akiyama, Masahiro Tatsumi; Oshima, Taku; Chumsakul, Onuma; Ishikawa, Shu; Maki, Hisaji

    2016-08-01

    Although the speed of nascent DNA synthesis at individual replication forks is relatively uniform in bacterial cells, the dynamics of replication fork progression on the chromosome are hampered by a variety of natural impediments. Genome replication dynamics can be directly measured from an exponentially growing cell population by sequencing newly synthesized DNA strands that were specifically pulse-labeled with the thymidine analogue 5-bromo-2'-deoxyuridine (BrdU). However, a short pulse labeling with BrdU is impracticable for bacteria because of poor incorporation of BrdU into the cells, and thus, the genomewide dynamics of bacterial DNA replication remain undetermined. Using a new thymidine-requiring Escherichia coli strain, eCOMB, and high-throughput sequencing, we succeeded in determining the genomewide replication profile in bacterial cells. We also found that fork progression is paused in two ~200-kb chromosomal zones that flank the replication origin in the growing cells. This origin-proximal obstruction to fork progression was overcome by an increased thymidine concentration in the culture medium and enhanced by inhibition of transcription. These indicate that DNA replication near the origin is sensitive to the impediments to fork progression, namely a scarcity of the DNA precursor deoxythymidine triphosphate and probable conflicts between replication and transcription machineries.

  20. Tightly linked flanking microsatellite markers for the Usher syndrome type I locus on the short arm of chromosome 11.

    PubMed Central

    Keats, B. J.; Nouri, N.; Pelias, M. Z.; Deininger, P. L.; Litt, M.

    1994-01-01

    Usher syndrome type I is an autosomal recessive disease characterized by profound congenital hearing impairment and vestibular dysfunction followed by the onset of progressive pigmentary retinopathy in childhood or early adolescence. A locus (USH1C) for one form of this disease was previously assigned to the short arm of chromosome 11 through linkage studies in the Acadian population of southwestern Louisiana. Linkage analyses of a set of microsatellite markers in 27 Acadian families provide evidence that USH1C lies between D11S861 and D11S928. Three markers (D11S419, D11S921, and D11S899) that lie between the flanking markers show no recombination with USH1C, and all 54 chromosomes with the abnormal allele at the disease locus have identical alleles for D11S419 and D11S921. This haplotype was found on only 10 of 50 chromosomes with the normal allele at the disease locus, suggesting a strong founder effect. Of the 54 chromosomes with the abnormal allele, 12 had a divergent allele at D11S899. These results suggest that USH1C is in the 2-3-cM interval between D11S861 and D11S899. PMID:8128966

  1. Analysis of 5' flanking regions of the gamma globin genes from major African haplotype backgrounds associated with sickle cell disease.

    PubMed

    Month, S R; Wood, R W; Trifillis, P T; Orchowski, P J; Sharon, B; Ballas, S K; Surrey, S; Schwartz, E

    1990-02-01

    There are at least three major African haplotype backgrounds on which the beta s mutation arises. Sequence changes in the immediate 5' flanking area of the gamma-globin genes may account for differences in fetal hemoglobin expression among the three haplotypes. We determined the sequence from -350 to 10 bp 5' of the G gamma and A gamma fetal globin genes from one beta s-containing chromosome on each of the three major haplotype backgrounds. The Senegal chromosome had a T at -158 5' to the G gamma gene; the Benin (BEN) chromosome had an A to G change at -309 5' to the G gamma gene; and the Central African Republic (CAR) chromosome had a C to T change at -271 5' to the A gamma gene. Genomic DNA from patients with sickle cell disease was analyzed using the polymerase chain reaction and radiolabeled allele-specific oligonucleotide probes. The -309 G variant 5' to the G gamma gene is associated with BEN chromosomes, and the -271 T variant 5' to A gamma with CAR. The -309 change was also found on beta A-containing chromosomes, while the -271 change was not. The -309 change may have predated the beta s mutation on the BEN chromosome.

  2. Nucleotide sequence of murine PCNA: interspecies comparison of the cDNA and the 5' flanking region of the gene.

    PubMed

    Shipman-Appasamy, P M; Cohen, K S; Prystowsky, M B

    1991-01-01

    Proliferating cell nuclear antigen (PCNA) RNA levels are regulated by transcription as well as changes in stability, in growing cells. We have cloned the murine PCNA cDNA and a fragment of the murine PCNA gene flanking the transcription initiation site. Comparison of the murine deduced amino acid sequence with the PCNA sequence from rat, human, Drosophila, Saccharomyces cerevisiae, and higher plants, reveals extensive homology between species. The homology is likely to be related to the fundamental role of PCNA as an auxiliary protein for DNA replication. Consensus sequences for transcriptional regulatory factors identified within 520 bp 5' of the cap site of the murine PCNA gene include: an inverted CCAAT site, an enhancer core element (EBP-1), three cAMP-response elements (CRE-BP), one AP-2 site, three Sp1 sites, and two octamer sequences. The first 20 bp of the transcriptional unit are homologous to an initiator element, which may direct transcription from RNA polymerase II in the absence of a TATAA box. The consensus elements in the murine PCNA gene are similar in sequence and/or location to elements identified in the genes for human, Drosophilia, and yeast PCNA.

  3. Composition, geometry, and emplacement dynamics of a large volcanic island landslide offshore Martinique: From volcano flank-collapse to seafloor sediment failure?

    NASA Astrophysics Data System (ADS)

    Brunet, Morgane; Le Friant, Anne; Boudon, Georges; Lafuerza, Sara; Talling, Peter; Hornbach, Matthew; Ishizuka, Osamu; Lebas, Elodie; Guyard, Hervé

    2016-03-01

    Landslides are common features in the vicinity of volcanic islands. In this contribution, we investigate landslides emplacement and dynamics around the volcanic island of Martinique based on the first scientific drilling of such deposits. The evolution of the active Montagne Pelée volcano on this island has been marked by three major flank-collapses that removed much of the western flank of the volcano. Subaerial collapse volumes vary from 2 to 25 km3 and debris avalanches flowed into the Grenada Basin. High-resolution seismic data (AGUADOMAR-1999, CARAVAL-2002, and GWADASEIS-2009) is combined with new drill cores that penetrate up to 430 m through the three submarine landslide deposits previously associated to the aerial flank-collapses (Site U1399, Site U1400, Site U1401, IODP Expedition 340, Joides Resolution, March-April 2012). This combined geophysical and core data provide an improved understanding of landslide processes offshore a volcanic island. The integrated analysis shows a large submarine landslide deposit, without debris avalanche deposits coming from the volcano, comprising up to 300 km3 of remobilized seafloor sediment that extends for 70 km away from the coast and covers an area of 2100 km2. Our new data suggest that the aerial debris avalanche deposit enter the sea but stop at the base of submarine flank. We propose a new model dealing with seafloor sediment failures and landslide propagation mechanisms, triggered by volcanic flank-collapse events affecting Montagne Pelée volcano. Newly recognized landslide deposits occur deeper in the stratigraphy, suggesting the recurrence of large-scale mass-wasting processes offshore the island and thus, the necessity to better assess the associated tsunami hazards in the region.

  4. The Rock Engineering System (RES) applied to landslide susceptibility zonation of the northeastern flank of Etna: methodological approach and results

    NASA Astrophysics Data System (ADS)

    Apuani, Tiziana; Corazzato, Claudia

    2015-04-01

    Ground deformations in the northeastern flank of Etna are well known. Despite only a few landslide events have been documented, these have significantly involved and damaged lifelines and buildings. These events are mainly related to the activity of the volcano-tectonic structures and associated seismicity, as in the case of the 2002 reactivation of the Presa landslide during an increased activity of the Pernicana fault system. In order to highlight the areal distribution of potentially unstable slopes based on a detailed, site-specific study of the factors responsible for landslide, and to ultimately contribute to risk management, a landslide susceptibility analysis of the northeastern flank of Etna in the Pernicana area was carried out, and a susceptibility map at 1:10.000 scale was produced, extending over an area of 168 km2. Different methods are proposed in the literature to obtain the regional distribution of potentially unstable slopes, depending on the problem scale, the slope dynamic evolution in the geological context, and the availability of data. Among semi-quantitative approaches, the present research combines the Rock Engineering System (RES) methodology with parameter zonation mapping in a GIS environment. The RES method represents a structured approach to manage a high number of interacting factors involved in the instability problem. A numerically coded, site-specific interaction matrix (IM) analyzes the cause-effect relationship in these factors, and calculates the degree of interactivity of each parameter, normalized by the overall interactivity of the system (weight factor). In the specific Etna case, the considered parameters are: slope attitude, lithotechnical properties (lithology, structural complexity, soil and rock mass quality), land use, tectonic structures, seismic activity (horizontal acceleration) and hydrogeological conditions (groundwater and drainage). Thematic maps are prepared at 1:10.000 scale for each of these parameters, and

  5. Genetic diversity, paraphyly and incomplete lineage sorting of mtDNA, ITS2 and microsatellite flanking region in closely related Heliopora species (Octocorallia).

    PubMed

    Yasuda, Nina; Taquet, Coralie; Nagai, Satoshi; Fortes, Miguel; Fan, Tung-Yung; Harii, Saki; Yoshida, Terutoyo; Sito, Yuta; Nadaoka, Kazuo

    2015-12-01

    Examining genetic diversity and lineage sorting of different genes in closely related species provide useful information for phylogenetic analyses and ultimately for understanding the origins of biodiversity. In this study, we examined inter- and intraspecific genetic variation in internal transcribed spacer 2 (ITS2), partial mitochondrial gene (mtMutS), and nuclear microsatellite flanking region in two closely related octocoral species (Heliopora coerulea, HC-A and HC-B). These species were recently identified in a population genetic study using microsatellite markers. The two species have different reproductive timing, which ecologically promotes lineage sorting. In this study, we examined whether species boundaries could be detected by the commonly used nuclear ITS2 and mtMutS, as well as by possibly neutral microsatellite flanking sequences. Haplotype network analysis of microsatellite flanking region revealed that a possible ancestral haplotype was still shared between the two species, indicating on-going lineage sorting. Haplotype network analysis of ITS2 and microsatellite flanking region revealed shared haplotypes between the two lineages. The two species shared fewer ITS2 sequences than microsatellite flanking region sequences. The almost fixed point mutation at the tip of helix 3 of ITS2 was not associated with the secondary structure or compensatory base changes (CBCs). The phylogenetic tree of ITS2 showed paraphyly and that of the microsatellite flanking region indicated that lineage sorting for the two species may be incomplete. Much higher intra- and inter-individual variation of ITS2 was observed in HC-B than that in HC-A, highlighting the importance of examining ITS2 from multiple individuals to estimate genetic diversity. The mitochondrial mtMutS gene sequences from 39 individuals, including both species collected from Japan and Taiwan, showed no variation because of slow rates of mitochondrial nucleotide substitution. This study suggests caution

  6. A Proteomic Analysis of the Upper and Lower Flanks of the Base of Rice Shoot in the Gravitropism

    NASA Astrophysics Data System (ADS)

    Hu, Liwei; Chen, Haiying; Dou, Xianying; Jin, Jing; Sun, Weining; Cai, Weiming

    2015-11-01

    Due to gravitational stimulation, the lower part of a shoot base grows faster than the upper part, leading the shoot to curve upward. Though much research has been done on the mechanism of plant gravitropism, it still requires extensive elucidation. Recently, functional genomic strategies have been applied to study this mechanism in plants. The present study carried out a proteomic analysis to gain a better understanding of gravity stimulation in rice. Three-week-old rice seedlings were gravitropically stimulated and samples were harvested at 4 different time points: 0.5, 3, 6, and 9 h. Then, the total crude proteins were extracted from the lower and upper parts of the shoot base, separated by 2-DE, and silver stained. At each time point, proteins in the lower and upper parts were compared, and the differently expressed proteins were identified using MALDI TOF or ESI-MS/MS. After gravity stimulation, proteins involved in nine different functional categories were either up-regulated or down-regulated. Sugar metabolism, glycolysis, the tricarboxylic acid (TCA/citric) cycle, pyruvate metabolism, and transcription regulation-related proteins were regulated. Although the initiation of defense reactions mainly occurred in roots, some different defense mechanisms were also evoked in the aerial tissues. Interestingly, the abundance of some proteins changed drastically at only 0.5 h after reorientation: inosine monophosphate dehydrogenase (up to 6.49-fold higher in lower flanks at 0.5 h), ATP synthase D (4.25-fold), and ribulose-1,5 -bisphosphate carboxylase oxygenase (3.62-fold). These findings may aid in understanding the mechanism of the gravitropism.

  7. Intein-Promoted Cyclization of Aspartic Acid Flanking the Intein Leads to Atypical N-Terminal Cleavage.

    PubMed

    Minteer, Christopher J; Siegart, Nicolle M; Colelli, Kathryn M; Liu, Xinyue; Linhardt, Robert J; Wang, Chunyu; Gomez, Alvin V; Reitter, Julie N; Mills, Kenneth V

    2017-02-28

    Protein splicing is a post-translational reaction facilitated by an intein, or intervening protein, which involves the removal of the intein and the ligation of the flanking polypeptides, or exteins. A DNA polymerase II intein from Pyrococcus abyssi (Pab PolII intein) can promote protein splicing in vitro on incubation at high temperature. Mutation of active site residues Cys1, Gln185, and Cys+1 to Ala results in an inactive intein precursor, which cannot promote the steps of splicing, including cleavage of the peptide bond linking the N-extein and intein (N-terminal cleavage). Surprisingly, coupling the inactivating mutations to a change of the residue at the C-terminus of the N-extein (N-1 residue) from the native Asn to Asp reactivates N-terminal cleavage at pH 5. Similar "aspartic acid effects" have been observed in other proteins and peptides but usually only occur at lower pH values. In this case, however, the unusual N-terminal cleavage is abolished by mutations to catalytic active site residues and unfolding of the intein, indicating that this cleavage effect is mediated by the intein active site and the intein fold. We show via mass spectrometry that the reaction proceeds through cyclization of Asp resulting in anhydride formation coupled to peptide bond cleavage. Our results add to the richness of the understanding of the mechanism of protein splicing and provide insight into the stability of proteins at moderately low pH. The results also explain, and may help practitioners avoid, a side reaction that may complicate intein applications in biotechnology.

  8. Polymorphisms in the 5'-flanking regions of the GH, PRL, and Pit-1 genes with Muscovy duck egg production.

    PubMed

    Xu, Z Q; He, J; Ji, C L; Zhang, Y; Nie, Q H; Zhang, D X; Zhang, X Q

    2015-01-01

    Somatotropic axis-related genes contribute to reproduction of ducks. Five SNP in the 5'-flanking regions of the growth hormone (GH), prolactin (PRL), and pituitary-specific transcription factor (Pit-1) genes were identified and genotyped in a female population of Muscovy ducks. Association analysis of these SNP with Muscovy duck egg production traits was performed. Results showed that SNP C-515G of GH was significantly associated with egg number in ducks at age 59 wk (E59W; P = 0.0009) and egg number in ducks at age 300 d (E300D; P = 0.0022). Single nucleotide polymorphism C-441T of GH was significantly associated with E59W (P = 0.0014). Significant associations of SNP T-884C and T-335C of PRL with the age at first egg (A1D), E59W, and E300D were detected in this population (P < 0.0001). It was concluded that these 4 SNP might be useful markers to use with the aim of increasing Muscovy duck E59W. On the basis of genetic parameter estimation, the heritability of A1D, E300D, E59W, and molting time were 0.43 ± 0.04, 0.45 ± 0.04, 0.36 ± 0.04, and 0.04 ± 0.03, respectively. Strong positive genetic correlation was noted between E59W and E300D (correlation coefficient = 0.80), whereas a negative association was noted between E59W and A1D (correlation coefficient = -0.80). Therefore, the selection for improved A1D should also increase E59W.

  9. Neocentromeres in 15q24-26 Map to Duplicons Which Flanked an Ancestral Centromere in 15q25

    PubMed Central

    Ventura, Mario; Mudge, Jonathan M.; Palumbo, Valeria; Burn, Sally; Blennow, Elisabeth; Pierluigi, Mauro; Giorda, Roberto; Zuffardi, Orsetta; Archidiacono, Nicoletta; Jackson, Michael S.; Rocchi, Mariano

    2003-01-01

    The existence of latent centromeres has been proposed as a possible explanation for the ectopic emergence of neocentromeres in humans. This hypothesis predicts an association between the position of neocentromeres and the position of ancient centromeres inactivated during karyotypic evolution. Human chromosomal region 15q24-26 is one of several hotspots where multiple cases of neocentromere emergence have been reported, and it harbors a high density of chromosome-specific duplicons, rearrangements of which have been implicated as a susceptibility factor for panic and phobic disorders with joint laxity. We investigated the evolutionary history of this region in primates and found that it contains the site of an ancestral centromere which became inactivated about 25 million years ago, after great apes/Old World monkeys diverged. This inactivation has followed a noncentromeric chromosomal fission of an ancestral chromosome which gave rise to phylogenetic chromosomes XIV and XV in human and great apes. Detailed mapping of the ancient centromere and two neocentromeres in 15q24-26 has established that the neocentromere domains map approximately 8 Mb proximal and 1.5 Mb distal of the ancestral centromeric region, but that all three map within 500 kb of duplicons, copies of which flank the centromere in Old World Monkey species. This suggests that the association between neocentromere and ancestral centromere position on this chromosome may be due to the persistence of recombinogenic duplications accrued within the ancient pericentromere, rather than the retention of “centromere-competent” sequences per se. The high frequency of neocentromere emergence in the 15q24-26 region and the high density of clinically important duplicons are, therefore, understandable in the light of the evolutionary history of this region. PMID:12915487

  10. Retrotransposition creates sloping shores: a graded influence of hypomethylated CpG islands on flanking CpG sites.

    PubMed

    Grandi, Fiorella C; Rosser, James M; Newkirk, Simon J; Yin, Jun; Jiang, Xiaoling; Xing, Zhuo; Whitmore, Leanne; Bashir, Sanum; Ivics, Zoltán; Izsvák, Zsuzsanna; Ye, Ping; Yu, Y Eugene; An, Wenfeng

    2015-08-01

    Long interspersed elements (LINEs), through both self-mobilization and trans-mobilization of short interspersed elements and processed pseudogenes, have made an indelible impact on the structure and function of the human genome. One consequence is the creation of new CpG islands (CGIs). In fact, more than half of all CGIs in the genome are associated with repetitive DNA, three-quarters of which are derived from retrotransposons. However, little is known about the epigenetic impact of newly inserted CGIs. We utilized a transgenic LINE-1 mouse model and tracked DNA methylation dynamics of individual germline insertions during mouse development. The retrotransposed GFP marker sequence, a strong CGI, is hypomethylated in male germ cells but hypermethylated in somatic tissues, regardless of genomic location. The GFP marker is similarly methylated when delivered into the genome via the Sleeping Beauty DNA transposon, suggesting that the observed methylation pattern may be independent of the mode of insertion. Comparative analyses between insertion- and non-insertion-containing alleles further reveal a graded influence of the retrotransposed CGI on flanking CpG sites, a phenomenon that we described as "sloping shores." Computational analyses of human and mouse methylomic data at single-base resolution confirm that sloping shores are universal for hypomethylated CGIs in sperm and somatic tissues. Additionally, the slope of a hypomethylated CGI can be affected by closely positioned CGI neighbors. Finally, by tracing sloping shore dynamics through embryonic and germ cell reprogramming, we found evidence of bookmarking, a mechanism that likely determines which CGIs will be eventually hyper- or hypomethylated.

  11. Research on a measurement principle of the double-flank gear rolling test with many degrees of freedom for fast inspection

    NASA Astrophysics Data System (ADS)

    Shi, Zhao-yao; Tang, Jie

    2008-10-01

    Radial composite deviations can be assessed by the traditional double-flank gear rolling tester, but it is hard to obtain tangential deviations (helix, taper, etc.) of the produced gear. To solve this problem, a measuring principle of the double-flank gear rolling test with many degrees of freedom was investigated in order to inspect radial composite deviations and tangential deviations during one inspection. This paper presents the measuring model, the definition of the deviations and the evaluation method, including the radial composite helical slope deviation and the radial composite helical taper deviation. An In-line Gear Measuring Machine (GMM) was developed based on this measuring principle to meet the demand of high-speed inspections in mass-production gear workshops.

  12. Fusion primer and nested integrated PCR (FPNI-PCR): a new high-efficiency strategy for rapid chromosome walking or flanking sequence cloning

    PubMed Central

    2011-01-01

    Background The advent of genomics-based technologies has revolutionized many fields of biological enquiry. However, chromosome walking or flanking sequence cloning is still a necessary and important procedure to determining gene structure. Such methods are used to identify T-DNA insertion sites and so are especially relevant for organisms where large T-DNA insertion libraries have been created, such as rice and Arabidopsis. The currently available methods for flanking sequence cloning, including the popular TAIL-PCR technique, are relatively laborious and slow. Results Here, we report a simple and effective fusion primer and nested integrated PCR method (FPNI-PCR) for the identification and cloning of unknown genomic regions flanked known sequences. In brief, a set of universal primers was designed that consisted of various 15-16 base arbitrary degenerate oligonucleotides. These arbitrary degenerate primers were fused to the 3' end of an adaptor oligonucleotide which provided a known sequence without degenerate nucleotides, thereby forming the fusion primers (FPs). These fusion primers are employed in the first step of an integrated nested PCR strategy which defines the overall FPNI-PCR protocol. In order to demonstrate the efficacy of this novel strategy, we have successfully used it to isolate multiple genomic sequences namely, 21 orthologs of genes in various species of Rosaceace, 4 MYB genes of Rosa rugosa, 3 promoters of transcription factors of Petunia hybrida, and 4 flanking sequences of T-DNA insertion sites in transgenic tobacco lines and 6 specific genes from sequenced genome of rice and Arabidopsis. Conclusions The successful amplification of target products through FPNI-PCR verified that this novel strategy is an effective, low cost and simple procedure. Furthermore, FPNI-PCR represents a more sensitive, rapid and accurate technique than the established TAIL-PCR and hiTAIL-PCR procedures. PMID:22093809

  13. The tsunami effects of a volcanic island flank collapse on a semi-enclosed basin: The Pico-São Jorge channel in the Azores archipelago

    NASA Astrophysics Data System (ADS)

    Quartau, R.; Omira, R.; Ramalho, I.; Baptista, M. A.; Mitchell, N. C.

    2015-12-01

    The Azores archipelago is a set of nine volcanic islands in the middle of the North Atlantic, close to the triple junction between the North American, Eurasian and African plates. Due to their location, the islands are seismic and volcanically active, which makes them especially vulnerable to these types of hazards that could eventually trigger flank collapses, capable of generating destructive tsunamis. However, solid evidence of large-scale flank collapses has only been found recently in Pico Island (Costa et al., 2014; Quartau et al., 2015). This study investigates for the first time the tsunami effects of a flank collapse of the northeastern subaerial slope of Pico Island that occurred more than 70 ka ago. We first reconstructed the pre-event sub-aerial morphology of the island, and then numerically model the flank failure involving an estimated volume of ~8 km3, its flow toward and under the sea of ~14 km, and the subsequent tsunami generation and propagation. The modelling suggests that the collapse of Pico created a mega-tsunami that significantly impacted the coast of adjacent São Jorge Island only after 7 minutes after generation, with wave run-up reaching a maximum of 50 m at some coastlines. Most of the tsunami energy became trapped in the semi-enclosed basin between Pico and São Jorge Islands, with only relatively little energy escaping to neighboring islands. Acknowledgments The author wishes to acknowledge the European Union's Seventh Framework Programme (FP7/2007-2013) under grant agreement n° 603839 (Project ASTARTE - Assessment, Strategy and Risk Reduction for Tsunamis in Europe)" for its major contribution for the success of this study. Publication supported by project FCT UID/GEO/50019/2013 - Instituto Dom Luiz. The author also acknowledges Fundação Luso-Americana para o Desenvolvimento for supporting the participation in the meeting.

  14. Implementing reverse genetics in Rosaceae: analysis of T-DNA flanking sequences of insertional mutant lines in the diploid strawberry, Fragaria vesca.

    PubMed

    Oosumi, Teruko; Ruiz-Rojas, Juan Jairo; Veilleux, Richard E; Dickerman, Allan; Shulaev, Vladimir

    2010-09-01

    Reverse genetics is used for functional genomics research in model plants. To establish a model system for the systematic reverse genetics research in the Rosaceae family, we analyzed genomic DNA flanking the T-DNA insertions in 191 transgenic plants of the diploid strawberry, Fragaria vesca. One hundred and seventy-six T-DNA flanking sequences were amplified from the right border (RB) and 37 from the left border (LB) by thermal asymmetric interlaced PCR. Analysis of the T-DNA nick positions revealed that T-DNA was most frequently nicked at the cleavage sites. Analysis of 11 T-DNA integration sites indicated that T-DNA was integrated into the F. vesca genome by illegitimate recombination, as reported in other model plants: Arabidopsis, rice and tobacco. First, deletion of DNA was found at T-DNA integration target sites in all transgenic plants tested. Second, microsimilarities of a few base pairs between the left and/or right ends of the T-DNA and genomic sites were found in all transgenic plants tested. Finally, filler DNA was identified in four break-points. Out of 191 transgenic plants, T-DNA flanking sequences of 79 plants (41%) showed significant similarity to genes, elements or proteins of other plant species and 67 (35%) of the sequences are still unknown strawberry gene fragments. T-DNA flanking sequences of 126 plants (66%) showed homology to plant ESTs. This is the first report of T-DNA integration in a sizeable population of a rosaceous species. We have shown in this paper that T-DNA integration in strawberry is not random but directed by sequence microsimilarities in the host genome.

  15. Establishment of a polychlorinated biphenyl-dechlorinating microbial consortium, specific for doubly flanked chlorines, in a defined, sediment-free medium

    SciTech Connect

    Wu, Q.; Sowers, K.R.; May, H.D.

    2000-01-01

    Estuarine sediment from Charleston Harbor, South Carolina, was used as inoculum for the development of an anaerobic enrichment culture that specifically dechlorinates doubly flanked chlorines (i.e., chlorines bound to carbon that are flanked on both sides by other chlorine-carbon bonds) of polychlorinated biphenyls (PCBs). Dechlorination was restricted to the para chlorine in cultures enriched with 10 mM fumarate, 50 ppm (173 {micro}M) 2,3,4,5-tetrachlorobiphenyl, and no sediment. Initially the rate of dechlorination decreased upon the removal of sediment from the medium. However, the dechlorinating activity was sustainable, and following sequential transfer in a defined, sediment-free estuarine medium, the activity increased to levels near that observed with sediment. The culture was nonmethanogenic, and molybdate, ampicillin, chloramphenicol, neomycin, and streptomycin inhibited dechlorination activity; bromethanesulfonate and vancomycin did not. Addition of 17 PCB congeners indicated that the culture specifically removes double flanked chlorines, preferably in the para position, and does not attack ortho chlorines. This is the first microbial consortium shown to para or meta dechlorinate a PCB congener in a defined sediment-free medium. It is the second PCB-dechlorinating enrichment culture to be sustained in the absence of sediment, but its dechlorinating capabilities are entirely different from those of the other sediment-free PCB-dechlorinating culture, an ortho-dechlorinating consortium, and do not match any previously published Aroclor-dechlorinating patterns.

  16. Morphotectonic architecture of the Transantarctic Mountains rift flank between the Royal Society Range and the Churchill Mountains based on geomorphic analysis

    USGS Publications Warehouse

    Demyanick, Elizabeth; Wilson, Terry J.

    2007-01-01

    Extensional forces within the Antarctic Plate have produced the Transantarctic Mountains rift-flank uplift along the West Antarctic rift margin. Large-scale linear morphologic features within the mountains are controlled by bedrock structure and can be recognized and mapped from satellite imagery and digital elevation models (DEMs). This study employed the Antarctic Digital Database DEM to obtain slope steepness and aspect maps of the Transantarctic Mountains (TAM) between the Royal Society Range and the Churchill Mountains, allowing definition of the position and orientation of the morphological axis of the rift-flank. The TAM axis, interpreted as a fault-controlled escarpment formed by coast-parallel retreat, provides a marker for the orientation of the faulted boundary between the TAM and the rift system. Changes in position and orientation of the TAM axis suggests the rift flank is segmented into tectonic blocks bounded by relay ramps and transverse accommodation zones. The transverse boundaries coincide with major outlet glaciers, supporting interpretation of rift structures between them. The pronounced morphological change across Byrd Glacier points to control by structures inherited from the Ross orogen.

  17. New Pressure Results from the Expedition 336 CORKs at North Pond, Western Flank of the Mid-Atlantic Ridge

    NASA Astrophysics Data System (ADS)

    Becker, K.; Villinger, H. W.; Davis, E. E.

    2014-12-01

    We report results from a nearly two-year record of pressure data from three CORK hydrogeological observatories in the ~8x15 km "North Pond" sedimented basin in ~7 Ma crust west of the mid-Atlantic Ridge at 23°N. The new data were recovered during operations with the ROV Jason from the German R/V Maria S. Merian in April of 2014. Two of the CORKs (in Holes U1382A and U1383C) had been installed during IODP Expedition 336 in fall of 2011, with an initial installment of 6-7 months data recovered in spring 2012, also by Jason from R/V Merian. The third hole, U1383B, was instrumented during the 2012 cruise with a "CORK-Lite" deployed by the ROV. All three installations monitor formation pressures in basement beneath the sediment pond. The new data confirm results of the first half-year of data, which suggested a slight formation overpressure (~10 kPa) relative to hydrostatic in the two full CORK installations. This was somewhat surprising given (a) the long history of downhole flow in DSDP Hole 395A that also penetrated basement beneath the sediment pond, and (b) prior observations at more thickly-sedimented eastern Pacific ridge flanks of formation underpressures in sites drilled into basement lows. The new results show a small phase lag and attenuation of formation tidal signals relative to seafloor tides that is the same in all three holes, which confirms that the CORKs are properly sealed at the seafloor. The phase lag and attenuation are also the same among three separate basement intervals in Hole U1383C, which suggests either that the entire drilled section is hydrogeologically well connected or that downhole packers between the intervals do not seal completely. We explore potential models to explain the slight observed overpressures. One possibility is that the geometry of the isolated sediment pond results in higher formation temperatures and less dense formation fluids immediately below the relatively impermeable sediment pond, such that surrounding cooler

  18. Isotopic characterization of mountain precipitation along the eastern flank of the Andes between 32.5 - 35°S

    NASA Astrophysics Data System (ADS)

    Hoke, G. D.; Aranibar, J. N.; Viale, M.; Araneo, D. C.; LLano, C. L.

    2011-12-01

    Data describing the isotopic composition of precipitation in the Andes are sparse: on the South American continent one IAEA Global Network of Isotopes in Precipitation (GNIP) station above 1500 m elevation exists south of La Paz. Better spatial density is necessary to improve our understanding of isotopes in mountain precipitation, which has implications for how to interpret isotopic information from the geologic record and the validation of isotope tracking modules in climate models. We present finding from two-years of quasi-monthly precipitation collection on the eastern flank of the Andes between 32.5 and 35°S latitude. A total of 123 samples were collected from 10 stations from Setember 2008 until September 2010. North of 33°S, the 2500 m average elevation Precordillera forms a steep front orographic barrier and the 2000 m elevation Uspallata Valley separates the Precordillera from the high Andes to the East. South of 33°S the Precordillera ends and the Andes return to a simple linear morphology. The low-leeward (eastern) side of the Andes receives predominately summer precipitation from convective storms, usually triggered by daytime upslope flow or synoptic-scale easterly flow over the Precordillera. Moving westward from the low-leeward side to the range crest, the influence of the easterly summer precipitation wanes and winter spillover precipitation from mid-latitude westerly storms beings to dominate. Our results show the local meteoric water line is slightly steeper (~0.5) than the global meteoric water line and a y-intercept of 14. The most negative δ18O values vary as much as 15 per mil seasonally, while averages weighted by precipitation amount show a strong cross-barrier (elevation) dependence. At these latitudes, the weighted average precipitation δ18O values show a significant deviation from river water near the range crest. The influence of the different moisture sources, from synoptic-scale easterly or westerly flow, is distinguished by

  19. Simulation of the Etna 2001 flank eruption with a steady-state numerical model of magma ascent

    NASA Astrophysics Data System (ADS)

    La Spina, Giuseppe; Burton, Mike; de'Michieli Vitturi, Mattia

    2015-04-01

    Volcanoes exhibit a wide range of eruption styles, from relatively slow effusive eruptions, generating lava flows and lava domes, to explosive eruptions, in which very large volumes of fragmented magma and volcanic gas are ejected high into the atmosphere. Magma ascent dynamics in a volcanic conduit play a key role in determining the eruptive style of a volcano. However, due to the lack of direct observations in the conduit itself, numerical models, constrained with observational data, provide invaluable tools for quantitative insights into the complex magma ascent processes. We have developed a 1D steady-state multiphase multicomponent gas-magma-solid mathematical model, consisting of a set of non-linear partial differential and constitutive equations. The governing equations used in this work are designed to model multiphase fluid with disequilibrium processes, represented through the formalism of thermodynamically compatible hyperbolic systems as a system of conservative partial differential equations with relaxation terms. This numerical model has been used to reproduce the 2001 flank eruption at mount Etna. During this eruption, seven fissures at different altitude were active, showing different eruptive styles: fire fountains, Strombolian activities and lava effusions. From a mineralogical point of view, two different lavas were erupted. The vent higher than 2600 m a.s.l. (hereafter Upper vents, UV) erupted plagioclase-rich magma with an high crystal content. On the other hand, the vents located at 2550 and 2100 m a.s.l. (hereafter Lower vents, LV) produced a plagioclase-poor magma with a lower crystal content than UV magmas. With our numerical model we have investigated both eruptive events at UV and LV. Using the estimation for volume flow rate and for crystal content we are able to constraint the conduit radius and the temperature of the magma chamber. Furthermore, our numerical results indicate that UV and LV magmas are originated from the same magma, but

  20. Multiple 5'-flanking regions of the human alpha-skeletal actin gene synergistically modulate muscle-specific expression.

    PubMed

    Muscat, G E; Kedes, L

    1987-11-01

    Transfection into myogenic and nonmyogenic cell lines was used to investigate the transcriptional regulation of the human alpha-skeletal actin gene. We demonstrated that 1,300 base pairs of the 5'-flanking region directed high-level transient expression of the bacterial chloramphenicol acetyltransferase gene in differentiated mouse C2C12 and rat L8 myotubes but not in mouse nonmuscle L.TK- and HuT-12 cells. Unidirectional 5' deletion analysis and heterologous promoter stimulation experiments demonstrated that at least three transcription-regulating subdomains lie in this 1,300-base-pair region. A proximal cis-acting transcriptional element located between positions -153 and -87 relative to the start of transcription at +1 was both sufficient and necessary for muscle-specific expression and developmental regulation during myogenesis in the two myogenic cell systems. The region 3' of position -87 interacted with factors present in both myogenic and fibroblastic cells and appeared to define, or to be a major component of, the basal promoter. In C2C12 myotubes, but not in L8 myotubes, a distal sequence domain between positions -1300 and -626 and the proximal sequence domain between positions -153 and -87 each induced transcription about 10-fold and synergistically increased CAT expression 100-fold over levels achieved by the sequences 3' of position -87. Furthermore, these cis-acting elements independently and synergistically modulated an enhancerless, heterologous simian virus 40 promoter in a tissue-specific manner. DNA fragments which included the proximal domain displayed classical enhancerlike properties. The central region between positions -626 and -153, although required in neither cell line, had a positive, two- to threefold, additive role in augmenting expression in L8 cells but not in C2C12 cells. This suggests that certain elements between positions -1300 and -153 appear to be differentially utilized for maximal expression in different myogenic cells and

  1. Earthquakes and faults at Mt. Etna (Italy): time-dependent approach to the seismic hazard of the eastern flank

    NASA Astrophysics Data System (ADS)

    Peruzza, L.; Azzaro, R.; D'Amico, S.; Tuve', T.

    2009-04-01

    A time dependent approach to seismic hazard assessment, based on a renewal model using the Brownian Passage Time (BPT) distribution, has been applied to the best-known seismogenic faults at Mt. Etna volcano. These structures have been characterised by frequent coseismic surface displacement, and a long list of historically well-documented earthquakes occurred in the last 200 years (CMTE catalogue, Azzaro et al., 2000, 2002, 2006). Seismic hazard estimates, given in terms of earthquake rupture forecast, are conditioned to the time elapsed since the last event: impending events are expected on the S. Tecla Fault, and secondly on the Moscatello Fault, both involved in the highly active, geodynamic processes affecting the eastern flank of Mt. Etna. Mean recurrence time of major events is calibrated by merging the inter-event times observed at each fault; aperiodicity is tuned on b-values, following the approach proposed by Zoeller et al. (2008). Finally we compare these mean recurrence times with the values obtained by using only geometrical and kinematic information, as defined in Peruzza et al. (2008) for faults in Italy. Time-dependent hazard assessment is compared with the stationary assumption of seismicity, and validated in a retrospective forward model. Forecasted rates in a 5 years perspective (1st April 2009 to 1st April 2014), on magnitude bins compatible with macroseismic data are available for testing in the frame of the CSEP (Collaboratory for the study of Earthquake Predictability, www.cseptesting.org) project. Azzaro R., Barbano M.S., Antichi B., Rigano R.; 2000: Macroseismic catalogue of Mt. Etna earthquakes from 1832 to 1998. Acta Volcanol., con CD-ROM, 12 (1), 3-36. http://www.ct.ingv.it/Sismologia/macro/default.htm Azzaro R., D'Amico S., Mostaccio A., Scarfì L.; 2002: Terremoti con effetti macrosismici in Sicilia orientale - Calabria meridionale nel periodo Gennaio 1999 - Dicembre 2001. Quad. di Geof., 27, 1-59. Azzaro R., D'Amico S., Mostaccio A

  2. Flank Instability Phenomena of the Sciara del Fuoco at Stromboli Volcano, Italy: Recent Evidence From a Multidisciplinary Study

    NASA Astrophysics Data System (ADS)

    Falsaperla, S.; Neri, M.; Pecora, E.; Spampinato, S.; Langer, H.

    2005-12-01

    The Sciara del Fuoco (SDF) at Stromboli volcano, located in the western side of the homonymous island, is a deep scar prone to phenomena of flank instability, such as rockfalls and flowing debris. By 30 December, 2002, landslides associated with tsunami waves affected both the sub aerial and submarine part of SDF two days after the onset of a new episode of lava emission. Recently, continuous monitoring as well as frequent structural field survey of SDF have provided an unprecedented opportunity for analyzing similar instability phenomena. Our study combines different data types in a complementary manner by merging geo-structural observations with visual images (taken by a video-cameras surveillance network and vertical air-photos) and seismic records. The goal of this research is to characterize this landslide-prone area for hazard mitigation purposes. The different data types are used to assess how and where SDF morphology changed in the time span from 2002 to 2004. The landslide phenomena of 30 December 2002 deeply eroded the SDF, creating a depression that in some points reached depths of several tens of meters. Afterwards, a reshape process began, through other minor erosive episodes and the deposition of lavas, which were erupted contemporaneously within a part of the collapsed/eroded zone, until the end of the eruption (21 July 2003). The effusion of lavas contributed to fill the depression, stabilizing a wide portion (more than 50 percent) of it and approaching a new gravitational equilibrium. Instead, in the zone of the landslides not reached by the lavas, erosive phenomena have continued to the present day, as evident from the progressive regression of the erosive rim, which has approached the crater zone. These phenomena yielded several rockfalls and flowing debris. Comparative video images and seismic records analysis provides an opportunity to detect the onset of these sliding episodes in time and space, and evaluate the mechanisms of motion

  3. Three new phosphoric triamides with a [C(O)NH]P(O)[N(C)(C)]2 skeleton: a database analysis of C-N-C and P-N-C bond angles.

    PubMed

    Pourayoubi, Mehrdad; Tarahhomi, Atekeh; Rheingold, Arnold L; Golen, James A

    2014-10-01

    In N,N,N',N'-tetraethyl-N''-(4-fluorobenzoyl)phosphoric triamide, C15H25FN3O2P, (I), and N-(2,6-difluorobenzoyl)-N',N''-bis(4-methylpiperidin-1-yl)phosphoric triamide, C19H28F2N3O2P, (II), the C-N-C angle at each tertiary N atom is significantly smaller than the two P-N-C angles. For the other new structure, N,N'-dicyclohexyl-N''-(2-fluorobenzoyl)-N,N'-dimethylphosphoric triamide, C21H33FN3O2P, (III), one C-N-C angle [117.08 (12)°] has a greater value than the related P-N-C angle [115.59 (9)°] at the same N atom. Furthermore, for most of the analogous structures with a [C(=O)NH]P(=O)[N(C)(C)]2 skeleton deposited in the Cambridge Structural Database [CSD; Allen (2002). Acta Cryst. B58, 380-388], the C-N-C angle is significantly smaller than the two P-N-C angles; exceptions were found for four structures with the N-methylcyclohexylamide substituent, similar to (III), one structure with the seven-membered cyclic amide azepan-1-yl substituent and one structure with an N-methylbenzylamide substituent. The asymmetric units of (I), (II) and (III) contain one molecule, and in the crystal structures, adjacent molecules are linked via pairs of N-H···O=P hydrogen bonds to form dimers.

  4. Successful fabrication of a convex platform PMMA cell-counting slide using a high-precision perpendicular dual-spindle CNC machine tool

    NASA Astrophysics Data System (ADS)

    Chen, Shun-Tong; Chang, Chih-Hsien

    2013-12-01

    This study presents a novel approach to the fabrication of a biomedical-mold for producing convex platform PMMA (poly-methyl-meth-acrylate) slides for counting cells. These slides allow for the microscopic examination of urine sediment cells. Manufacturing of such slides incorporates three important procedures: (1) the development of a tabletop high-precision dual-spindle CNC (computerized numerical control) machine tool; (2) the formation of a boron-doped polycrystalline composite diamond (BD-PCD) wheel-tool on the machine tool developed in procedure (1); and (3) the cutting of a multi-groove-biomedical-mold array using the formed diamond wheel-tool in situ on the developed machine. The machine incorporates a hybrid working platform providing wheel-tool thinning using spark erosion to cut, polish, and deburr microgrooves on NAK80 steel directly. With consideration given for the electrical conductive properties of BD-PCD, the diamond wheel-tool is thinned to a thickness of 5 µm by rotary wire electrical discharge machining. The thinned wheel-tool can grind microgrooves 10 µm wide. An embedded design, which inserts a close fitting precision core into the biomedical-mold to create step-difference (concave inward) of 50 µm in height between the core and the mold, is also proposed and realized. The perpendicular dual-spindles and precision rotary stage are features that allow for biomedical-mold machining without the necessity of uploading and repositioning materials until all tasks are completed. A PMMA biomedical-slide with a plurality of juxtaposed counting chambers is formed and its usefulness verified.

  5. Selection of Levels of Dressing Process Parameters by Using TOPSIS Technique for Surface Roughness of En-31 Work piece in CNC Cylindrical Grinding Machine

    NASA Astrophysics Data System (ADS)

    Patil, Sanjay S.; Bhalerao, Yogesh J.

    2017-02-01

    Grinding is metal cutting process used for mainly finishing the automobile components. The grinding wheel performance becomes dull by using it most of times. So it should be reshaping for consistent performance. It is necessary to remove dull grains of grinding wheel which is known as dressing process. The surface finish produced on the work piece is dependent on the dressing parameters in sub-sequent grinding operation. Multi-point diamond dresser has four important parameters such as the dressing cross feed rate, dressing depth of cut, width of the diamond dresser and drag angle of the dresser. The range of cross feed rate level is from 80-100 mm/min, depth of cut varies from 10 – 30 micron, width of diamond dresser is from 0.8 – 1.10mm and drag angle is from 40o – 500, The relative closeness to ideal levels of dressing parameters are found for surface finish produced on the En-31 work piece during sub-sequent grinding operation by using Technique of Order Preference by Similarity to Ideal Solution (TOPSIS).In the present work, closeness to ideal solution i.e. levels of dressing parameters are found for Computer Numerical Control (CNC) cylindrical angular grinding machine. After the TOPSIS technique, it is found that the value of Level I is 0.9738 which gives better surface finish on the En-31 work piece in sub-sequent grinding operation which helps the user to select the correct levels (combinations) of dressing parameters.

  6. The BTB and CNC homology 1 (BACH1) target genes are involved in the oxidative stress response and in control of the cell cycle.

    PubMed

    Warnatz, Hans-Jörg; Schmidt, Dominic; Manke, Thomas; Piccini, Ilaria; Sultan, Marc; Borodina, Tatiana; Balzereit, Daniela; Wruck, Wasco; Soldatov, Alexey; Vingron, Martin; Lehrach, Hans; Yaspo, Marie-Laure

    2011-07-01

    The regulation of gene expression in response to environmental signals and metabolic imbalances is a key step in maintaining cellular homeostasis. BTB and CNC homology 1 (BACH1) is a heme-binding transcription factor repressing the transcription from a subset of MAF recognition elements at low intracellular heme levels. Upon heme binding, BACH1 is released from the MAF recognition elements, resulting in increased expression of antioxidant response genes. To systematically address the gene regulatory networks involving BACH1, we combined chromatin immunoprecipitation sequencing analysis of BACH1 target genes in HEK 293 cells with knockdown of BACH1 using three independent types of small interfering RNAs followed by transcriptome profiling using microarrays. The 59 BACH1 target genes identified by chromatin immunoprecipitation sequencing were found highly enriched in genes showing expression changes after BACH1 knockdown, demonstrating the impact of BACH1 repression on transcription. In addition to known and new BACH1 targets involved in heme degradation (HMOX1, FTL, FTH1, ME1, and SLC48A1) and redox regulation (GCLC, GCLM, and SLC7A11), we also discovered BACH1 target genes affecting cell cycle and apoptosis pathways (ITPR2, CALM1, SQSTM1, TFE3, EWSR1, CDK6, BCL2L11, and MAFG) as well as subcellular transport processes (CLSTN1, PSAP, MAPT, and vault RNA). The newly identified impact of BACH1 on genes involved in neurodegenerative processes and proliferation provides an interesting basis for future dissection of BACH1-mediated gene repression in neurodegeneration and virus-induced cancerogenesis.

  7. Hawaiian Volcano Flank Stability Appraised From Strength Testing the Hawaiian Scientific Drilling Project's (HSDP) 3.1-km Drill Core

    NASA Astrophysics Data System (ADS)

    Thompson, N.; Watters, R. J.; Schiffman, P.

    2005-12-01

    the means of the basaltic flows, intrusive and pillow lava values. The test results imply that shallow rotational slumps that develop within the upper few kilometers of spreading Hawai'ian volcanoes within low strength, poorly-consolidated, smectite-rich hyaloclastites are similar to those we have found from the incipient and smectitic alteration zones of the HSDP cores. Deeper slumps might be directed through over-pressured pillow lava units as a result of the stronger pillow lava units permitting deeper failure surfaces to develop. Petrographically the Mauna Kea hyaloclastites appear similar to those from actively spreading Hawai'ian shield volcanoes. Alteration processes apparently affect the strength of these hyaloclastites. In the shallower zones of incipient and smectitic alteration, hyaloclastites generally retain their high primary porosities. In the deeper, palagonitic zone of alteration, the hyaloclastites gain both compressive and shear strength, primarily through consolidation and zeolitic cementation. The marked strength contrast between hyaloclastites, and the lavas that overlie and underlie them is significant, and may be a primary factor in localizing the destabilization of the flanks of Hawaiian volcanoes.

  8. Chlorine stable isotopic composition of basement fluids of the eastern flank of the Juan de Fuca Ridge (ODP Leg 168)

    NASA Astrophysics Data System (ADS)

    Bonifacie, Magali; Monnin, Christophe; Jendrzejewski, Nathalie; Agrinier, Pierre; Javoy, Marc

    2007-08-01

    This paper presents chlorine stable isotope compositions (δ 37Cl) of sediment pore waters collected by squeezing sediment cores from the sediment-basement interface along an East-West transect through the eastern flank of the Juan de Fuca Ridge (ODP Leg 168). These "near basement fluids" (NBF) are generally thought to be representative of low-temperature fluids circulating in the off-axis basaltic crust. The δ 37Cl value of the fluid directly sampled from a flow at the base of Site 1026 (WSTP1026) is also reported. NBF display δ 37Cl values between - 2.09‰ and - 0.12‰ relative to the Standard Mean Ocean Chloride (SMOC defined as 0‰) and small variations in chlorinity (˜ 4%). These data contrast with the homogeneity of δ 37Cl values associated with highly variable chlorinities observed in high-temperature on-axis fluids [M. Bonifacie, J.L. Charlou, N. Jendrzejewski, P. Agrinier, J.P. Donval, Chlorine isotopic compositions of ridge axis high temperature hydrothermal vent fluids, Chem. Geol. 221(2005) 279-288.]. The NBF δ 37Cl values show a general decreasing trend with distance from the ridge-axis except for two fluids. When plotted against δ 18O values, the δ 37Cl of the NBF show two different trends. This paper discusses the possible contributions on NBF δ 37Cl values of fluid-mixing, water-rock interactions and transport processes (diffusion, ion membrane filtration) that can occur in the igneous basement. However, as none of these processes can fully explain the observed δ 37Cl variations, the potential effect of the sediment cover is also investigated. At site 1026, the interstitial pore fluid displays a δ 37Cl signature significantly lower than that of the fluid discharge sample (- 1.90‰ and - 0.28‰, respectively). This difference, demonstrated here cannot be an artifact of the sampling method, rather indicates the influence of the sediment cover on NBF δ 37Cl values. The potential contributions of physical processes associated with

  9. Anomalously high b-values in the South Flank of Kilauea volcano, Hawaii: Evidence for the distribution of magma below Kilauea's East rift zone

    USGS Publications Warehouse

    Wyss, M.; Klein, F.; Nagamine, K.; Wiemer, S.

    2001-01-01

    The pattern of b-value of the frequency-magnitude relation, or mean magnitude, varies little in the Kaoiki-Hilea area of Hawaii, and the b-values are normal, with b = 0.8 in the top 10 km and somewhat lower values below that depth. We interpret the Kaoiki-Hilea area as relatively stable, normal Hawaiian crust. In contrast, the b-values beneath Kilauea's South Flank are anomalously high (b = 1.3-1.7) at depths between 4 and 8 km, with the highest values near the East Rift zone, but extending 5-8 km away from the rift. Also, the anomalously high b-values vary along strike, parallel to the rift zone. The highest b-values are observed near Hiiaka and Pauahi craters at the bend in the rift, the next highest are near Makaopuhi and also near Puu Kaliu. The mildest anomalies occur adjacent to the central section of the rift. The locations of the three major and two minor b-value anomalies correspond to places where shallow magma reservoirs have been proposed based on analyses of seismicity, geodetic data and differentiated lava chemistry. The existence of the magma reservoirs is also supported by magnetic anomalies, which may be areas of dike concentration, and self-potential anomalies, which are areas of thermal upwelling above a hot source. The simplest explanation of these anomalously high b-values is that they are due to the presence of active magma bodies beneath the East Rift zone at depths down to 8 km. In other volcanoes, anomalously high b-values correlate with volumes adjacent to active magma chambers. This supports a model of a magma body beneath the East Rift zone, which may widen and thin along strike, and which may reach 8 km depth and extend from Kilauea's summit to a distance of at least 40 km down rift. The anomalously high b-values at the center of the South Flank, several kilometers away from the rift, may be explained by unusually high pore pressure throughout the South Flank, or by anomalously strong heterogeneity due to extensive cracking, or by both

  10. Effect of transgene concentration, flanking matrix attachment regions, and RecA-coating on the efficiency of mouse transgenesis mediated by intracytoplasmic sperm injection.

    PubMed

    Moreira, Pedro Nuno; Pérez-Crespo, Miriam; Ramírez, Miguel Angel; Pozueta, Julio; Montoliu, Lluís; Gutiérrez-Adán, Alfonso

    2007-02-01

    Intracytoplasmic sperm injection (ICSI) of DNA-loaded sperm cells has been shown to be a valuable tool for the production of transgenic animals, especially when DNA constructs with submegabase magnitude are used. In order to optimize and to understand the mechanism of the ICSI-mediated transgenesis, we have evaluated the impact of transgene DNA concentration, transgene flanking with nuclear matrix attachment regions (MARs), and the use of recombinase A (RecA)-coated DNA on the efficiency of mouse transgenesis production by ICSI. Presented data include assays with three DNA constructs; an enhanced green fluorescent protein (EGFP) plasmid of 5.4 kb, this plasmid flanked with two MAR elements (2.3 Kb of the human beta-interferon domain boundaries), and a yeast artificial chromosome (YAC) construct of approximately 510 kb (the largest transgenic construct introduced by ICSI that we have seen reported). ICSI-mediated transgenesis was done in the B6D2 mouse strain using different concentrations for each construct. Analysis of generated data indicated that ICSI allows the use of higher DNA concentrations than the ones used for pronuclear microinjection, however, when a certain threshold is exceeded, embryo/fetal viability decrease dramatically. In addition, independently of the transgene concentration tested, transgene flanking with MAR sequences did not have a significant impact on the efficiency of this transgenesis method. Finally, we observed that although the overall efficiency of ICSI-mediated transgenesis with fresh spermatozoa and RecA-complexed DNA was similar to the one obtained with the common ICSI-mediated transgenesis approach with frozen-thawed spermatozoa and RecA free DNA, this method was not as efficient in maintaining a low frequency of founder animal mosaicism, suggesting that different mechanisms of transgene integration might result from each procedure.

  11. Contrasting two-dimensional and three-dimensional models of outcrop-to-outcrop hydrothermal circulation on the eastern flank of the Juan de Fuca Ridge

    NASA Astrophysics Data System (ADS)

    Fisher, A. T.; Winslow, D. M.; Stauffer, P. H.; Gable, C. W.; Zyvoloski, G.

    2015-12-01

    We present results from two-dimensional and three-dimensional coupled (fluid and heat flow) simulations of ridge-flank hydrothermal circulation on the eastern flank of the Juan de Fuca Ridge. Field studies in this region demonstrate the existence of an active hydrothermal siphon operating between two seamounts separated by ~50 km, and provide quantitative constraints that help to determine which simulations are successful in replicating known properties and processes. Constraints from field observations include (a) the flow rate between the outcrops, (b) the presence of secondary convection within the basement aquifer, leading to simultaneous recharge and discharge through a single outcrop (in additional to siphon flow between outcrops), (c) direct measurements of crustal permeability in basement boreholes, and (d) the lack of a regional seafloor heat flux anomaly as a consequence of outcrop-to-outcrop circulation. New simulations include an assessment of crustal permeability and thickness, outcrop permeability, and a comparison of simulation results using different geometries. Three-dimensional simulations are more consistent with field observations than their two-dimensional counterparts and indicate a crustal aquifer of ≤300 m thick having a bulk permeability between 3×10-13 and 2×10-12 m2, values consistent with borehole measurements. In addition, we find fluid flow rates and crustal cooling efficiencies that are an order of magnitude greater in three-dimensional simulations than inferred from two-dimensional simulations using equivalent properties. These results show that three-dimensional simulations of outcrop-to-outcrop hydrothermal circulation on a ridge flank improves the geological and geometric accuracy of results, in comparison to models run in two dimensions.

  12. Geological and InSAR surveys highlight tectonic hazard in densely inhabited areas on the lower southeastern flank of Mount Etna volcano, Italy

    NASA Astrophysics Data System (ADS)

    Neri, Marco; Sansosti, Eugenio; Casu, Francesco; Leonardi, Anna; Pepe, Antonio; Pepe, Susi; Solaro, Giuseppe

    2015-04-01

    A constant seaward sliding mechanism is affecting the eastern to southern flanks of Mt. Etna volcano, involving an overall on-shore area of >700 km2.The margins of this unstable area are marked by the Pernicana Fault System to the north and the Ragalna Fault System to the south-west. The unstable area is divided into several blocks characterized by different kinematics and delimited by active faults crossing, in several cases, urban areas, towns and villages. One of these structural discontinuities is the Trecastagni-S.G.La Punta-Aci Trezza fault system, a tectonic structure extending from the volcano summit (where it trends NNW-SSE), to the lower southeastern flank (trending NW-SE) and reaching the coast at the Aci Trezza village (WNW-ESE and E-W). The last segment of this tectonic system crosses several important roads and man-made structures within Aci Trezza, and continues for a few kilometers off-shore crossing the Faraglioni stacks-Lachea island. Recently, analysis of long-period InSAR data has added some details to the sliding motion on the lower south-eastern flank of the volcano, particularly on the S.G.La Punta-Aci Trezza fault segments. Field geological and instrumental data confirmed the slip activity and the extension of the tectonically disturbed areas, highlighting a transition zone between the two main fault segments. On the other hand, some of the features detected by InSAR are not clearly visible in the field and were never detected before by classical geological surveys. These results are of crucial importance in terms of hazard related to tectonic movements, especially in densely inhabited zones such as the south-eastern flank of Etna, where more than half a million people live. The structural details obtained through these kinds of studies may guide future land use planning appropriately also within towns and villages, where aseismic and seismogenic very active faults are evident at the surfaces.

  13. Age and evolution of the lower NW flank of the Hecates Tholus volcano, Mars, based on crater size-frequency distribution on CTX images

    NASA Astrophysics Data System (ADS)

    de Pablo, M. A.; Michael, G. G.; Centeno, J. D.

    2013-09-01

    We present results of crater size-frequency distribution (SFD) analysis of the lower NW flank of the Hecates Tholus volcano, Elysium volcanic province of Mars, by the use of images acquired by the Context (CTX) instrument on board of Mars Reconnaissance Orbiter (6 m/pixel in resolution). Previous similar works were focused on the caldera complex of the volcano and some sectors of the lower NW flank. In this study, we analyzed the complete crater population of the main geomorphological units characterizing this sector of the volcano (de Pablo, M.A., Centeno, J.D. [2012]. Journal of Maps 8(3), 208-2014), discarding areas with possible clustering to avoid erroneous results. In total, 16 areas corresponding to 10 geomorphological units were measured and absolute model ages were derived for them. The ages correspond to ages of origin as well as of the end of resurfacing events, depending on the analyzed sector, resulting in some cases in more than one age per area. Our results are in general in agreement with previous works, and establish that the age of the origin of the Hecates Tholus volcano could be at least 3.8 Ga, with possible volcanic eruptions occurring until at least 335 Ma. Glacial events were also dated at 90 Ma, 30 Ma, 16 Ma, and 6 Ma, although it is possible to recognize ages which could also be related to the recent ice ages of Mars, between 2 and 0.4 Ma. Our results allowed us to determine that glacial processes could have been active as far back as 1.4 Ga, with possible events at intermediate ages. We deduced from the resulting ages and our observations on CTX images and the available geomorphological map of the area, that glacial-related processes played an important role in sculpting this flank of the volcano, and the possible level of the glacial sheet at the edge of the main depression of this flank was also deduced, with altitudes ranging between -2035 m and -2490 m, in agreement with the presence of smooth outcrops and roche moutonnées in the

  14. Rift flank uplift and thermal evolution of an intracratonic rift basin (eastern Canada) determined by combined apatite and zircon (U-Th)/He thermochronology

    NASA Astrophysics Data System (ADS)

    Hardie, Rebecca; Schneider, David; Metcalf, James; Flowers, Rebecca

    2015-04-01

    As a significant portion of the world's oil reserves are retrieved from rift systems, a better understanding of the timing of thermal evolution and burial history of these systems will increase the potential for the discovery of hydrocarbon-bearing rifts. The Ottawa Embayment of the St. Lawrence Platform of eastern Canada is a reactivated intracratonic rift basin related to the opening of the Iapetus Ocean at ca. 620-570 Ma, followed by the formation of the well-developed continental passive margin. Siliciclastic sediments derived from the adjacent uplifted Neoproterozoic Grenville basement provide the basin fill material. Apatite and zircon (U-Th)/He thermochronology allows for low-temperature analysis across the exposed crystalline rift flank into the synrift sedimentary sequence to resolve the unroofing, burial and subsidence history of the region. Samples were collected along a ~250 km NE-SW transect, oblique to the axis of the rift, from Mont-Tremblant, Québec (~900 m) to the central axis of the Paleozoic rift in the Southern Ontario Lowlands (~300 m). Targets included Neoproterozoic metamorphic rocks of the Grenville Province along the rift flank and basinal Cambro-Ordovician Potsdam Group. Samples from the rift flank yield zircon ages from ca. 650 Ma to ca. 560 Ma and apatite ages from ca. 290 Ma to ca. 190 Ma, with a weak positive correlation between age and grain size. Zircon ages demonstrate a strong negative correlation with radiation damage: as eU increases, age decreases. By incorporating (U-Th)/He ages with regional constraints in the thermal modelling program HeFTy, viable temperature time paths for the region can be determined. Through inverse and forward modeling, preliminary rift flank (U-Th)/He ages correspond to post-Grenville cooling with <4 km of post-Carboniferous burial. The data define slow and long episodes of syn- to post-rift cooling with rates between 0.4 and 0.1 °C/Ma. (U-Th)/He dating of samples along the full-length of the transect

  15. Direct evidence for a three-dimensional magnetic flux rope flanked by two active magnetic reconnection X lines at Earth's magnetopause.

    PubMed

    Øieroset, M; Phan, T D; Eastwood, J P; Fujimoto, M; Daughton, W; Shay, M A; Angelopoulos, V; Mozer, F S; McFadden, J P; Larson, D E; Glassmeier, K-H

    2011-10-14

    We report the direct detection by three THEMIS spacecraft of a magnetic flux rope flanked by two active X lines producing colliding plasma jets near the center of the flux rope. The observed density depletion and open magnetic field topology inside the flux rope reveal important three-dimensional effects. There was also evidence for nonthermal electron energization within the flux rope core where the fluxes of 1-4 keV superthermal electrons were higher than those in the converging reconnection jets. The observed ion and electron energizations differ from current theoretical predictions.

  16. Lack of association between the polymorphisms of beta-site APP-cleaving enzyme 2 (BACE2) 5'-flanking region and sporadic Alzheimer's disease.

    PubMed

    Yu, Yueyi; Jia, Jianping

    2009-02-27

    Amyloid beta-peptide (A beta) plays a central role in the pathogenesis of Alzheimer's disease (AD). A beta is produced by sequential cleavage of the amyloid precursor protein (APP) by two enzymes referred to as beta- and gamma-secretase. beta-secretase is of more importance, as it catalyses the rate-limiting step in the production of A beta. Although beta-site APP-cleaving enzyme 1 (BACE1) is known to cleave APP at the beta-secretase site as required for the generation of A beta, the role of its homologue BACE2 is controversial. For seeking the correlation of the BACE2 promoter with sporadic AD (SAD), we performed a case-control study in a Chinese Han population. In the study, we sequenced the 2641 bp fragment of the 5'-flanking region of BACE2 gene and found three polymorphisms which are -320C/- (rs11316732), -1541A/T (rs9975138) and -1904C/T (rs28656880). Definitive genotyping these markers and apolipoprotein E (APOE) polymorphism were surveyed using restriction enzyme digestion and direct sequencing in 359 SAD patients and 334 controls. We failed to find any association between these three polymorphisms and SAD even after statistical adjustment for age, gender and APOE epsilon 4 status. Our data do not support that there is a linkage between the 5'-flanking region polymorphisms of BACE2 and SAD in the Chinese Han population.

  17. 10Be dating of river terraces of Santo Domingo river, on Southeastern flank of the Mérida Andes, Venezuela: Tectonic and climatic implications

    NASA Astrophysics Data System (ADS)

    Guzmán, Oswaldo; Vassallo, Riccardo; Audemard, Franck; Mugnier, Jean-Louis; Oropeza, Javier; Yepez, Santiago; Carcaillet, Julien; Alvarado, Miguel; Carrillo, Eduardo

    2013-12-01

    In this study, we discuss the first cosmogenic 10Be dating of river terraces located in the lower reaches of the Santo Domingo river (Southeastern flank of the Mérida Andes, Western Venezuela). The geomorphic observations and dating allowed the restoration of the temporal evolution of incision rate, which was analysed in terms of tectonic, climatic and geomorphic processes. The long-term incision rate in the area has been constantly around 1.1 mm/a over the last 70 ka. Taking into account the geologic and geomorphologic setting, this value can be converted into the Late Pleistocene uplift rate of the Southeastern flank of the Mérida Andes. Our results show that the process of terraces formation in the lower reaches of the Santo Domingo river occurred at a higher frequency (103-104 years) than a glacial/interglacial cycle (104-105 years). According to the global and local climate curve, these terraces were abandoned during warm to cold transitions.

  18. Transcription initiation in vivo without classical transactivators: DNA kinks flanking the core promoter of the housekeeping yeast adenylate kinase gene, AKY2, position nucleosomes and constitutively activate transcription.

    PubMed

    Angermayr, Michaela; Oechsner, Ulrich; Gregor, Kerstin; Schroth, Gary P; Bandlow, Wolfhard

    2002-10-01

    The housekeeping gene of the major adenylate kinase in Saccharomyces cerevisiae (AKY2, ADK1) is constitutively transcribed at a moderate level. The promoter has been dissected in order to define elements that effect constitutive transcription. Initiation of mRNA synthesis at the AKY2 promoter is shown to be mediated by a non-canonic core promoter, (TA)(6). Nucleotide sequences 5' of this element only marginally affect transcription suggesting that promoter activation can dispense with transactivators and essentially involves basal transcription. We show that the core promoter of AKY2 is constitutively kept free of nucleosomes. Analyses of permutated AKY2 promoter DNA revealed the presence of bent DNA. DNA structure analysis by computer and by mutation identified two kinks flanking an interstitial stretch of 65 bp of moderately bent core promoter DNA. Kinked DNA is likely incompatible with packaging into nucleosomes and responsible for positioning nucleosomes at the flanks allowing unimpeded access of the basal transcription machinery to the core promoter. The data show that in yeast, constitutive gene expression can dispense with classical transcriptional activator proteins, if two prerequisites are met: (i) the core promoter is kept free of nucleosomes; this can be due to structural properties of the DNA as an alternative to chromatin remodeling factors; and (ii) the core promoter is pre-bent to allow a high rate of basal transcription initiation.

  19. Inversely repeating integrated hepatitis B virus DNA and cellular flanking sequences in the human hepatoma-derived cell line huSP.

    PubMed Central

    Mizusawa, H; Taira, M; Yaginuma, K; Kobayashi, M; Yoshida, E; Koike, K

    1985-01-01

    Among recombinant phages carrying integrated hepatitis B virus (HBV) DNA sequences cloned from the human hepatoma-derived cell line huSP, one clone, lambda hu-489, revealed some unusual features. The 2.25-kilobase Eco D fragment from the insert of this clone hybridized to the HBV DNA probe only and its nucleotide sequence was determined. The viral sequence, as well as a cellular flanking sequence, showed extensive rearrangement accompanied by inverted repetition. The Eco D fragment contained HBV DNA from the 5'-end region of gene S to the middle of gene X, followed by a long cellular flanking sequence. Moreover, a part of gene X was found inversely repeated at the head of the same gene S in a head-to-head configuration truncated by the same cellular sequence. Therefore, the same junction sequence of viral DNA and the cellular sequence was found at two different sites in the Eco D fragment in opposite polarities. Images PMID:2982143

  20. SARS-coronavirus spike S2 domain flanked by cysteine residues C822 and C833 is important for activation of membrane fusion

    SciTech Connect

    Madu, Ikenna G.; Belouzard, Sandrine; Whittaker, Gary R.

    2009-10-25

    The S2 domain of the coronavirus spike (S) protein is known to be responsible for mediating membrane fusion. In addition to a well-recognized cleavage site at the S1-S2 boundary, a second proteolytic cleavage site has been identified in the severe acute respiratory syndrome coronavirus (SARS-CoV) S2 domain (R797). C-terminal to this S2 cleavage site is a conserved region flanked by cysteine residues C822 and C833. Here, we investigated the importance of this well conserved region for SARS-CoV S-mediated fusion activation. We show that the residues between C822-C833 are well conserved across all coronaviruses. Mutagenic analysis of SARS-CoV S, combined with cell-cell fusion and pseudotyped virion infectivity assays, showed a critical role for the core-conserved residues C822, D830, L831, and C833. Based on available predictive models, we propose that the conserved domain flanked by cysteines 822 and 833 forms a loop structure that interacts with components of the SARS-CoV S trimer to control the activation of membrane fusion.

  1. The relationship between eruptive activity, flank collapse, and sea level at volcanic islands: A long-term (>1 Ma) record offshore Montserrat, Lesser Antilles

    NASA Astrophysics Data System (ADS)

    Coussens, Maya; Wall-Palmer, Deborah; Talling, Peter. J.; Watt, Sebastian. F. L.; Cassidy, Michael; Jutzeler, Martin; Clare, Michael A.; Hunt, James. E.; Manga, Michael; Gernon, Thomas. M.; Palmer, Martin. R.; Hatter, Stuart. J.; Boudon, Georges; Endo, Daisuke; Fujinawa, Akihiko; Hatfield, Robert; Hornbach, Matthew. J.; Ishizuka, Osamu; Kataoka, Kyoko; Le Friant, Anne; Maeno, Fukashi; McCanta, Molly; Stinton, Adam. J.

    2016-07-01

    Hole U1395B, drilled southeast of Montserrat during Integrated Ocean Drilling Program Expedition 340, provides a long (>1 Ma) and detailed record of eruptive and mass-wasting events (>130 discrete events). This record can be used to explore the temporal evolution in volcanic activity and landslides at an arc volcano. Analysis of tephra fall and volcaniclastic turbidite deposits in the drill cores reveals three heightened periods of volcanic activity on the island of Montserrat (˜930 to ˜900 ka, ˜810 to ˜760 ka, and ˜190 to ˜120 ka) that coincide with periods of increased volcano instability and mass-wasting. The youngest of these periods marks the peak in activity at the Soufrière Hills volcano. The largest flank collapse of this volcano (˜130 ka) occurred toward the end of this period, and two younger landslides also occurred during a period of relatively elevated volcanism. These three landslides represent the only large (>0.3 km3) flank collapses of the Soufrière Hills edifice, and their timing also coincides with periods of rapid sea level rise (>5 m/ka). Available age data from other island arc volcanoes suggest a general correlation between the timing of large landslides and periods of rapid sea level rise, but this is not observed for volcanoes in intraplate ocean settings. We thus infer that rapid sea level rise may modulate the timing of collapse at island arc volcanoes, but not in larger ocean-island settings.

  2. Tissue-specific expression, hormonal regulation and 5'-flanking gene region of the rat Clara cell 10 kDa protein: comparison to rabbit uteroglobin.

    PubMed Central

    Hagen, G; Wolf, M; Katyal, S L; Singh, G; Beato, M; Suske, G

    1990-01-01

    The amino acid sequence of rat Clara Cell 10 kDa secretory protein (CC10) shows 55% identity to rabbit uteroglobin. In order to define the relationship between rat CC10 and rabbit uteroglobin in detail, the tissue-specific expression and hormonal regulation of rat CC10 mRNA was analyzed. We report that like rabbit uteroglobin, rat CC10 mRNA is expressed in lung and esophagus, as well as in uteri of estrogen- and progesterone-treated females. Expression of CC10 mRNA in lung is regulated by glucocorticoids. The similarity in expression pattern of rat CC10 mRNA and rabbit uteroglobin mRNA is reflected by a striking similarity in the 5'-flanking regions of the two genes. Despite this overall similarity, two regions of 0.3 kb and 2.1 kb are absent in the rat CC10 upstream gene region. The larger region includes a cluster of hormone receptor binding sites, believed to be responsible for differential regulation of rabbit uteroglobin by glucocorticoids and progesterone. Thus, while the sequence identities in the coding and 5'-flanking regions point towards a common ancestor for the uteroglobin and CC10 gene, later events (deletions/insertions) might have caused species-specific differences in their regulation. Images PMID:2349092

  3. Short communication: duplication in the 5'-flanking region of the beta-lactoglobulin gene is linked to the BLG A allele.

    PubMed

    Braunschweig, M H

    2007-12-01

    beta-Lactoglobulin (beta-LG) is the major whey protein in the milk of cows and other ruminants. It is well established that the predominant genetic variants beta-LG A and B are differentially expressed. Extensive investigation of the genetic variation in the promoter region of the BLG gene revealed the existence of specific haplotypes associated with the A and B variants. However, the genetic basis for the differentially expressed BLG A and B alleles is still elusive. In this study additional genetic variation further upstream in the 5'-flanking region of the BLG gene was identified, including 6 single nucleotide substitutions, a single nucleotide deletion, and a 7-bp duplication. Comparison of DNA sequences showed that the investigated 5'-flanking region is highly conserved between ruminants, and the duplication g.-1885_-1879dupCTCTCGC and the substitution g.-1888A>G are only found in the BLG A and D alleles in cattle. The cytosine at position g.-1957 and the thymines at positions g.-2008 and g.-2049 are only found in BLG B alleles of cattle. It is suggested that the described genetic variability contributes to the differential allelic expression of the BLG gene.

  4. Type of faulting and orientation of stress and strain as a function of space and time in Kilauea's south flank, Hawaii

    USGS Publications Warehouse

    Gillard, D.; Wyss, M.; Okubo, P.

    1996-01-01

    Earthquake focal mechanisms of events occurring between 1972 and 1992 in the south flank of Kilauea volcano, Hawaii, are used to infer the state of stress and strain as a function of time and space. We have determined 870 fault plane solutions from P wave first motion polarities for events with magnitudes ML ??? 2.5 and depth ranging between 6 and 12 km. Faulting is characterized by a mixture of decollement, reverse, and normal faults. Most large earthquakes with magnitude M 7 rupture the decollement plane, since it is the only surface large enough to generate magnitude 7 or larger earthquakes. The percentage of reverse faulting events is high compared to the decollement and normal faulting mechanisms for the period 1972-1983. The percentage of decollement type focal mechanisms becomes dominant after 1983. This pattern of faulting activity suggests that pressure was building up within Kilauea's rift zone prior to the 1983 Puu'Oo eruption. Overall, a single stress orientation with the maximum compressive stress oriented SE perpendicular to the rift and dipping at 45?? is compatible with the coeval existence of decollement, reverse, and normal faults. However, in a crustal volume east of longitude 155??10'W, we find a change of the orientation of ??1 from nearly horizontal to plunging 45?? SE occurring in 1979. This stress rotation suggests magma movements within the aseismic part of Kilauea's east rift zone. The strain and stress orientations are coaxial in the south flank except within the volume where the stress rotation is observed. We observe a change in the relationship between stress and strain directions caused either by the shifting of seismic activity from reverse faults to decollements, while stress stays constant, or by a rotation of stress, while strain remains constant. Assuming that the model of a noncohesive Coulomb wedge is appropriate for Kilauea's south flank, we find that high pore pressures are prevalent along the decollement and within the wedge

  5. Iron oxidation state in (Mg,Fe)O: Calibration of the flank method on synthetic samples and application to natural inclusions in Lower Mantle diamonds

    NASA Astrophysics Data System (ADS)

    Longo, M.; McCammon, C.; Bulanova, G.; Kaminsky, F.

    2008-12-01

    Ferropericlase (Mg,Fe)O and (Mg,Fe)(Si,Al)O3 perovskite are believed to form the bulk of the Lower Mantle (LM). The interval of redox conditions in the LM is still debatable. It was shown that the Fe3+ concentration in perovskite is insensitive to oxygen fugacity, therefore we have turned our attention to (Mg,Fe)O. Our work involves calibrating the so-called "flank method" for synthetic (Mg,Fe)O, and applying the results to determine Fe3+/Fetot in ferropericlase inclusions from LM diamonds, as a direct tool for investigating LM redox conditions during diamond formation. Experiments were performed in a multi anvil apparatus to obtain ferropericlase crystals with high quality surfaces, and Fe3+/Fetot in them was determined by Moessbauer spectroscopy. Samples were subsequently analyzed using the EMP. The flank method sensu strictu consists of measuring two pre-defined energy positions FeLAlfa and FeLBeta, whose ratio is sensitive to Fe2+/Fe3+. Positive correlations of LBeta/LAlfa as a function of Fetot (wt percent) and Fe2+ (wt percent) were observed for (Mg,Fe)O similar to those reported in the literature for garnets. We applied a least-squares regression model to fit the three variables Fetot, LBeta/LAlfa and Fe2+, and chose the simplest equation that fit the data. Our calibration for (Mg,Fe)O with xFe between 2 and 36.6 wt percent shows an agreement of 1 sigma with Fe3+/Fetot determined by Moessbauer spectroscopy, but with the additional advantage of a spatial resolution on the order of 10 microns (compared to no smaller than 100 microns for Moessbauer). We applied the flank method calibration to 6 ferropericlase inclusions from ultra deep diamonds (4 from Mato Grosso and 2 from Machado River, Brazil). Results show that LBeta/LAlfa ratios are consistent with the trend observed for synthetic (Mg,Fe)O, with no obvious evidence for magnesioferrite exsolution. The obtained Fe3+/Fetot values between 8 and 13 percent, and their correlations with Na, Cr and Al show that

  6. Differential regulation of baboon SP-A1 and SP-A2 genes: structural and functional analysis of 5'-flanking DNA.

    PubMed

    Li, J; Gao, E; Seidner, S R; Mendelson, C R

    1998-12-01

    Surfactant protein (SP) A gene transcription is developmentally regulated and stimulated by hormones and factors that increase intracellular cAMP. The baboon (b) genome contains two highly similar SP-A genes, bSP-A1 and bSP-A2. With the use of a ribonuclease protection assay with gene-specific probes, the two bSP-A genes were found to be differentially regulated during baboon fetal lung development in that expression of the bSP-A2 gene appeared to be induced to a high level at a later time in gestation than that of the bSP-A1 gene. Both the bSP-A1 and bSP-A2 genes were found to be highly responsive to the inductive effects of cAMP in baboon fetal lung explants in culture. By DNase I footprinting and electrophoretic mobility shift assays with bacterially expressed thyroid transcription factor-1 (TTF-1) and type II cell nuclear extracts, three TTF-1 binding elements were identified within the 255-bp region flanking the 5'-end of each bSP-A gene; however, these differed in position and spacing for the two bSP-A genes. To functionally define the genomic regions that are required for cAMP regulation of bSP-A gene expression in type II cells, fusion genes composed of various amounts of 5'-flanking DNA from the bSP-A1 and bSP-A2 genes linked to the human growth hormone structural gene as a reporter were transfected into type II cells in primary culture. We found that 255 bp of 5'-flanking DNA, which contain three TTF-1 binding elements, from bSP-A1 and bSP-A2 genes were sufficient to mediate high basal and cAMP-inducible expression in type II cells. We also observed that there were no obvious differences in the magnitude of the responses of these fusion genes to cAMP treatment.

  7. A reconnaissance for signs of a Mississippi Valley-type lead-zinc mineralizing system on the eastern flank of the Rutbah Uplift, Anbar Province, Iraq

    USGS Publications Warehouse

    Hayes, Timothy S.; Mustafa, Mazin; Bennet, Thair

    2014-01-01

    Reconnaissance field visits and rock sampling were conducted at eight geologically selected locations within Mesozoic rocks on the eastern flank of the Rutbah Uplift, Anbar Province, western Iraq, in an attempt to determine if these rocks have been affected by a Mississippi Valley-Type (MVT) lead-zinc mineralizing system. Samples subsequently were studied by carbonate mineral staining, transmitted and reflected light petrology, and scanning electron microscopy with semi-quantitative energy dispersive elemental analyses. Single samples were studied by each, inductively coupled plasma mass spectrometry analyses of trace elements and fluid inclusion microthermometry. Permissive evidence indicates that there has been a MVT system present, but none of the evidence is considered definitive.

  8. Two new species of Limbodessus diving beetles from New Guinea - short verbal descriptions flanked by online content (digital photography, μCT scans, drawings and DNA sequence data)

    PubMed Central

    Ruthensteiner, Bernhard; Warikar, Evie Lilly; Neven, Katja; Hendrich, Lars

    2015-01-01

    Abstract Background To date only one species of Limbodessus diving beetles has been reported from the Island of New Guinea, L. compactus (Clark, 1862), which is widerspread in the Australian region. New information We describe two new species of microendemic New Guinea Limbodessus and use a compact descriptive format flanked by enriched online content in wiki powered species pages. Limbodessus baliem sp.n. is described from ca. 1,600 m altitude in the Baliem Valley of Papua and Limbodessus alexanderi sp.n. from >3,000 m altitude north of Sugapa, Papua. Based on our analysis, we also transfer three species from other genera to Limbodessus Guignot, 1939, with the following changes: Limbodessus deflectus (Ordish, 1966), new combination; Limbodessus leveri (J. Balfour-Browne, 1944), new combination; and Limbodessus plicatus (Sharp, 1882), new combination. PMID:26752969

  9. Role of highly central residues of P-loop and it's flanking region in preserving the archetypal conformation of Walker A motif of diverse P-loop NTPases.

    PubMed

    Pathak, Ekta; Atri, Neelam; Mishra, Rajeev

    2013-01-01

    P-loop NTPases represent a large and highly diverse protein family that is involved in variety of cellular functions. Walker A motif forms a typical arched conformation, necessary to accommodate the phosphate moiety of the nucleoside tri (or di-) phosphate in Ploop NTPases. The feature that maintains the ancient architecture of P-loop is unidentified and uncharacterized. Here, using a well established global network parameter, closeness centrality, we identify that Walker A and its flanking regions (N- and C-terminal) have high density of globally connected residue positions. We find that closeness centrality of these residue positions are conserved across common structural core of diverse domains of P-loop NTPase fold. Our results suggest the potential role of globally connected residues in maintaining the local conformation of P-loop.

  10. Retrotransposons in the flanking regions of normal plant genes: a role for copia-like elements in the evolution of gene structure and expression.

    PubMed Central

    White, S E; Habera, L F; Wessler, S R

    1994-01-01

    The wx-K mutation results from the insertion of a copia-like retrotransposon into exon 12 of the maize waxy gene. This retrotransposon, named Hopscotch, has one long open reading frame encoding all of the domains required for transposition. Computer-assisted database searches using Hopscotch and other plant copia-like retroelements as query sequences have revealed that ancient, degenerate retrotransposon insertions are found in close proximity to 21 previously sequenced plant genes. The data suggest that these elements may be involved in gene duplication and the regulation of gene expression. Similar searches using the Drosophila retrotransposon copia did not reveal any retrotransposon-like sequences in the flanking regions of animal genes. These results, together with the recent finding that reverse-transcriptase sequences characteristic of copia-like elements are ubiquitous and diverse in plants, suggest that copia-like retrotransposons are an ancient component of plant genomes. Images PMID:7991537

  11. Analysis of off-axis low-velocity zones on the flanks of the Endeavour segment of the Juan de Fuca Ridge

    NASA Astrophysics Data System (ADS)

    Wells, A. E.; Hooft, E. E.; Toomey, D. R.; Wilcock, W. S.; Weekly, R. T.

    2011-12-01

    At mid-ocean ridges of all spreading rates, oceanic crust forms primarily within a 1-2 km wide neovolcanic zone; however, there is an increasing recognition that crustal structure is modified by off-axis volcanism. We present seismic data from the intermediate-spreading Endeavour segment of the Juan de Fuca Ridge that reveal several crustal-level, low-velocity regions on the eastern and western flanks 7 to 16 km from the neovolcanic zone. The ~90 km long Endeavour segment lies between the Cobb and Endeavour overlapping spreading centers (OSCs). Seismic reflection data indicates the center of the segment is on a ~40 km wide plateau of greater crustal thickness that is interpreted to have developed when the Juan de Fuca Ridge overrode the melting anomaly associated with the Heckle seamount chain. Using the three-dimensional geometry of the Endeavour active source seismic tomography experiment conducted in 2009, we examine the travel times and amplitude anomalies of the Pg phase for a wide variety of source-receiver azimuths. In several locations on the eastern and western flanks of the Endeavour segment we observe significant and localized decreases in the amplitude of P waves, suggesting diffraction of energy around low-velocity bodies in the mid-crust. We model ray paths to estimate the depth of the anomalous regions. We also generate synthetic seismograms using finite difference waveform propagation through the three-dimensional seismic velocity structure that includes the seafloor topography. We test how low-velocity zones with various dimensions, depths, and physical properties affect the amplitudes and waveforms of crustal phases. We compare these synthetics with the observed anomalous regions to constrain the properties and geometry of the low velocity zones. We infer that the observed low velocity bodies are due to magma complexes at 2 to 3 km depth beneath bathymetric highs. On the eastern flank, three magma complexes are located 9 to 11 km from the axis

  12. Observations of Plasma Waves in the Colliding Jet Region of a 3D Magnetic Flux Rope Flanked by Two Active Reconnection X Lines at the Subsolar Magnetopause

    NASA Astrophysics Data System (ADS)

    Oieroset, M.; Sundkvist, D. J.; Chaston, C. C.; Phan, T. D.; Mozer, F.; McFadden, J. P.; Angelopoulos, V.; Andersson, L.; Eastwood, J. P.

    2014-12-01

    We have performed a detailed analysis of plasma and wave observations in a 3D magnetic flux rope encountered by the THEMIS spacecraft at the subsolar magnetopause. The extent of the flux rope was ˜270 ion skin depths in the outflow direction, and it was flanked by two active reconnection X lines producing colliding plasma jets in the flux rope core where ion heating and suprathermal electrons were observed. The colliding jet region was highly dynamic and characterized by the presence of high-frequency waves such as ion acoustic-like waves, electron holes, and whistler mode waves near the flux rope center and low-frequency kinetic Alfvén waves over a larger region. We will discuss possible links between these waves and particle heating.

  13. Varicella-zoster virus (VZV) origin of DNA replication oriS influences origin-dependent DNA replication and flanking gene transcription.

    PubMed

    Khalil, Mohamed I; Sommer, Marvin H; Hay, John; Ruyechan, William T; Arvin, Ann M

    2015-07-01

    The VZV genome has two origins of DNA replication (oriS), each of which consists of an AT-rich sequence and three origin binding protein (OBP) sites called Box A, C and B. In these experiments, the mutation in the core sequence CGC of the Box A and C not only inhibited DNA replication but also inhibited both ORF62 and ORF63 expression in reporter gene assays. In contrast the Box B mutation did not influence DNA replication or flanking gene transcription. These results suggest that efficient DNA replication enhances ORF62 and ORF63 transcription. Recombinant viruses carrying these mutations in both sites and one with a deletion of the whole oriS were constructed. Surprisingly, the recombinant virus lacking both copies of oriS retained the capacity to replicate in melanoma and HELF cells suggesting that VZV has another origin of DNA replication.

  14. Characterization of the human beta-secretase 2 (BACE2) 5'-flanking region: identification of a 268-bp region as the basal BACE2 promoter.

    PubMed

    Maloney, Bryan; Ge, Yuan-Wen; Greig, Nigel H; Lahiri, Debomoy K

    2006-01-01

    The main characteristic of Alzheimer's disease (AD) is brain deposition of the beta-amyloid (Abeta) peptide, generated endoproteolytically from Abeta precursor protein (APP) by beta- and gamma-secretases. A transmembrane aspartyl protease, beta-APP-cleaving enzyme (BACE1), was identified as beta-secretase. Although BACE1 cleaves APP at the beta-secretase site, the role of its homolog, beta-secretase 2 (BACE2) is poorly understood. We report the mRNA expression profile, DNA sequence, and molecular characterization of the BACE2 gene, located on chromosome 21q22.3. The BACE2 gene expresses more strongly in peripheral tissues, although BACE2 mRNA is found in the majority of brain regions, including the postcentral gyrus and temporal lobe. Characterization of 2932 bp of the BACE2 5'-flanking region (GC content of 55%), reveals the absence of canonical CCAAT and TATA boxes within 1 kb of the transcription start site (TSS). The sequence lacks significant internal repeats and has a housekeeping gene structure. Two active regions of the BACE2 promoter determine its basal expression and cell-type specificity. The proximal region (-31/+238) likely determines general basal expression, and the distal region (-2618/-1513), cell-type specificity. Several putative transcription factor sites, particularly SP1, Oct-1, and HES-1, are predicted to be within 1 kb of the TSS. On either side of the proximal promoter region, two negative regulatory domains might reduce BACE2 expression under an induced condition. The BACE2 5'-flanking region is likely to be highly regulated and expressed in a tissue type-specific manner.

  15. Association analysis between SNPs in the 5'-flanking region of the chicken GRP78 gene, thermotolerance parameters, and tissue mRNA expression.

    PubMed

    Kong, L N; Zhang, D X; Ji, C L; Zhang, X Q; Luo, Q B

    2015-06-10

    Glucose-regulated protein 78 (GRP78) is a molecular chaperone in the endoplasmic reticulum and can be induced by different kinds of environmental and physiological stress. Thus far, the role of the GRP78 gene in thermotolerance in chickens has not been investigated. In the present study, we detected sequence variations in the 5ꞌ-flanking region of the GRP78 gene and evaluated several thermotolerance parameters, such as T3, corticosterone, H/L ratio, and levels of CD3(+), CD4(+), and CD8(+) T cells, to further determine its associations at 35° and 15°C. The sequencing results revealed 10 SNPs in the 5'-flanking region of the GRP78 gene, and seven mutations were chosen for further genotyping in a White Recessive Rock (WRR) chicken population. The SNP C.-744C>G in WRR chickens was significantly correlated with heat tolerance parameters under both conditions; it may therefore exert a potential hereditary effect on heat tolerance, and the genotype GG may be advantageous for thermotolerance. The heart, liver, brain, and leg muscle tissues of 8-day-old WRR chickens were sampled from heat stress groups, which were defined by exposure to 1, 2, 3, and 6 h of persistent thermal stress, and a control group, which was not exposed to thermal stress. Quantitative real-time polymerase chain reaction assay indicated that the mRNA expression level of the GRP78 gene increased gradually under heat stress, peaked at 3 h, and then decreased. We conclude that the mRNA expression of the GRP78 gene is time- and tissue-dependent.

  16. Three-dimensional modeling of outcrop-to-outcrop hydrothermal circulation on the eastern flank of the Juan de Fuca Ridge

    NASA Astrophysics Data System (ADS)

    Winslow, D. M.; Fisher, A. T.; Stauffer, P. H.; Gable, C. W.; Zyvoloski, G. A.

    2016-03-01

    We present three-dimensional simulations of coupled fluid and heat transport in the ocean crust, to explore patterns and controls on ridge-flank hydrothermal circulation on the eastern flank of the Juan de Fuca Ridge. Field studies have shown that there is large-scale fluid flow in the volcanic ocean crust in this region, including local convection and circulation between two basement outcrops separated by ~50 km. New simulations include an assessment of crustal permeability and aquifer thickness, outcrop permeability, the potential influence of multiple discharging outcrops, and a comparison between two-dimensional (profile) and three-dimensional representations of the natural system. Field observations that help to constrain new simulations include a modest range of flow rates between recharging and discharging outcrops, secondary convection adjacent to the recharging outcrop, crustal permeability determinations made in boreholes, and the lack of a regional seafloor heat flux anomaly as a consequence of advective heat loss from the crust. Three-dimensional simulations are most consistent with field observations when models use a crustal permeability of 3 × 10-13 to 2 × 10-12 m2, and the crustal aquifer is ≤300 m thick, values consistent with borehole observations. We find fluid flow rates and crustal cooling efficiencies that are an order of magnitude greater in three-dimensional simulations than in two-dimensional simulations using equivalent properties. Simulations including discharge from an additional outcrop can also replicate field observations but tend to increase the overall rate of recharge and reduce the flow rate at the primary discharge site.

  17. Frictional processes during flank motion at Mount Etna (Italy): experimental characterisation of slip on similar and dissimilar volcanic and sedimentary rocks.

    NASA Astrophysics Data System (ADS)

    Rozanski, Wojciech; Lavallee, Yan; Kendrick, Jackie; Castagna, Angela; Mitchell, Thomas; Heap, Michael; Vinciguerra, Sergio; Hirose, Takehiro; Dingwell, Donald

    2015-04-01

    The edifice of Mount Etna (Italy) is structurally unstable, exhibiting a near continuous ESE seaward sliding along a set of faults due to interplay between regional tectonics, gravity instability and magma intrusion. Continuous seismic and ground deformation monitoring reveals the resulting large-scale flank motion at variable rates. The mechanisms controlling this faulting kinetic remains, however, poorly constrained. Examination of the fault zones reveals a range of rock types along the different fault segments: fresh and altered basalt, clay and limestone. As lithological contrasts can jeopardise the structural stability of an edifice, we experimentally investigate the frictional properties of these rocks using low- to high-velocity-rotary shear tests on similar and dissimilar rocks to better understand episodes of slow flank motion as well as rapid and catastrophic sector collapse events. The first set of experiments was performed at velocities up to 1.2 m/s and at normal stresses of 1.5 MPa, commensurate with depths of the contacts seen in the Etna edifice. Friction experiments on clay gouge shows the strong rate-weakening dependence of slip in this material as well as the release of carbon dioxide. Friction experiments on solid rocks show a wider range of mechanical behaviour. At high velocity (>0.6 m/s) volcanic rocks tend to melt whereas the clay and limestone do not; rather they decarbonate, which prevents the rock from achieving the temperature required for melting. Experiments on dissimilar rocks clearly show that composition of host rocks affects the composition and viscosity of the resultant frictional melt, which can have a dramatic effect on shear stress leading to fault weakening or strengthening depending on the combination of host rock samples. A series of low- to moderate-slip velocity experiments is now being conducted to complement our dataset and provide a more complete rock friction model applicable to Mount Etna.

  18. Molecular characterization of transgenic shallots (Allium cepa L.) by adaptor ligation PCR (AL-PCR) and sequencing of genomic DNA flanking T-DNA borders.

    PubMed

    Zheng, S J; Henken, B; Sofiari, E; Jacobsen, E; Krens, F A; Kik, C

    2001-06-01

    Genomic DNA blot hybridization is traditionally used to demonstrate that, via genetic transformation, foreign genes are integrated into host genomes. However, in large genome species, such as Allium cepa L., the use of genomic DNA blot hybridization is pushed towards its limits, because a considerable quantity of DNA is needed to obtain enough genome copies for a clear hybridization pattern. Furthermore, genomic DNA blot hybridization is a time-consuming method. Adaptor ligation PCR (AL-PCR) of genomic DNA flanking T-DNA borders does not have these drawbacks and seems to be an adequate alternative to genomic DNA blot hybridization. Using AL-PCR we proved that T-DNA was integrated into the A. cepa genome of three transgenic lines transformed with Agrobacterium tumefaciens EHA 105 (pCAMBIA 1301). The AL-PCR patterns obtained were specific and reproducible for a given transgenic line. The results showed that T-DNA integration took place and gave insight in the number of T-DNA copies present. Comparison of AL-PCR and previously obtained genomic DNA blot hybridization results pointed towards complex T-DNA integration patterns in some of the transgenic plants. After cloning and sequencing the AL-PCR products, the junctions between plant genomic DNA and the T-DNA insert could be analysed in great detail. For example it was shown that upon T-DNA integration a 66 bp genomic sequence was deleted, and no filler DNA was inserted. Primers located within the left and right flanking genomic DNA in transgenic shallot plants were used to recover the target site of T-DNA integration.

  19. A polymorphic indel containing the RS3 microsatellite in the 5' flanking region of the vasopressin V1a receptor gene is associated with chimpanzee (Pan troglodytes) personality.

    PubMed

    Hopkins, W D; Donaldson, Z R; Young, L J

    2012-07-01

    Vasopressin is a neuropeptide that has been strongly implicated in the development and evolution of complex social relations and cognition in mammals. Recent studies in voles have shown that polymorphic variation in the promoter region of the arginine vasopressin V1a receptor gene (avpr1a) is associated with different dimensions of sociality. In humans, variation in a repetitive sequence element in the 5' flanking region of the AVPR1A, known as RS3, have also been associated with variation in AVPR1a gene expression, brain activity and social behavior. Here, we examined the association of polymorphic variation in this same 5' flanking region of the AVPR1A on subjective ratings of personality in a sample of 83 chimpanzees (Pan troglodytes). Initial analyses indicated that 34 females and 19 males were homozygous for the short allele, which lacks RS3 (DupB(-/-)), while 18 females and 12 males were heterozygous and thus had one copy of the long allele containing RS3 (DupB(+/-)), yielding overall allelic frequencies of 0.82 for the DupB(-) allele and 0.18 for the DupB(+) allele. DupB(+/+) chimpanzees were excluded from the analysis because of the limited number of individuals. Results indicated no significant sex difference in personality between chimpanzees homozygous for the deletion of the RS3-containing DupB region (DupB(-/-)); however, among chimpanzees carrying one allele with the DupB present (DupB(+/-)), males had significantly higher dominance and lower conscientiousness scores than females. These findings are the first evidence showing that the AVPR1A gene plays a role in different aspects of personality in male and female chimpanzees.

  20. The association of SNPs in Hsp90β gene 5' flanking region with thermo tolerance traits and tissue mRNA expression in two chicken breeds.

    PubMed

    Chen, Zhuo-Yu; Gan, Jian-Kang; Xiao, Xiong; Jiang, Li-Yan; Zhang, Xi-Quan; Luo, Qing-Bin

    2013-09-01

    Thermo stress induces heat shock proteins (HSPs) expression and HSP90 family is one of them that has been reported to involve in cellular protection against heat stress. But whether there is any association of genetic variation in the Hsp90β gene in chicken with thermo tolerance is still unknown. Direct sequencing was used to detect possible SNPs in Hsp90β gene 5' flanking region in 3 chicken breeds (n = 663). Six mutations, among which 2 SNPs were chosen and genotypes were analyzed with PCR-RFLP method, were found in Hsp90β gene in these 3 chicken breeds. Association analysis indicated that SNP of C.-141G>A in the 5' flanking region of the Hsp90β gene in chicken had some effect on thermo tolerance traits, which may be a potential molecular marker of thermo tolerance, and the genotype GG was the thermo tolerance genotype. Hsp90β gene mRNA expression in different tissues detected by quantitative real-time PCR assay were demonstrated to be tissue dependent, implying that different tissues have distinct sensibilities to thermo stress. Besides, it was shown time specific and varieties differences. The expression of Hsp90β mRNA in Lingshan chickens in some tissues including heart, liver, brain and spleen were significantly higher or lower than that of White Recessive Rock (WRR). In this study, we presume that these mutations could be used in marker assisted selection for anti-heat stress chickens in our breeding program, and WRR were vulnerable to tropical thermo stress whereas Lingshan chickens were well adapted.

  1. Genetic diversity of Histoplasma capsulatum isolated from infected bats randomly captured in Mexico, Brazil, and Argentina, using the polymorphism of (GA)(n) microsatellite and its flanking regions.

    PubMed

    Taylor, Maria Lucia; Hernández-García, Lorena; Estrada-Bárcenas, Daniel; Salas-Lizana, Rodolfo; Zancopé-Oliveira, Rosely M; García de la Cruz, Saúl; Galvão-Dias, Maria A; Curiel-Quesada, Everardo; Canteros, Cristina E; Bojórquez-Torres, Georgina; Bogard-Fuentes, Carlos A; Zamora-Tehozol, Erick

    2012-02-01

    The genetic diversity of 47 Histoplasma capsulatum isolates from infected bats captured in Mexico, Brazil, and Argentina was studied, using sequence polymorphism of a 240-nucleotides (nt) fragment, which includes the (GA)(n) length microsatellite and its flanking regions within the HSP60 gene. Three human clinical strains were used as geographic references. Based on phylogenetic analyses of 240-nt fragments achieved, the relationships among H. capsulatum isolates were resolved using neighbour-joining and maximum parsimony methods. The tree topologies obtained by both methods were identical and highlighted two major clusters of isolates. Cluster I had three sub-clusters (Ia, Ib, and Ic), all of which contained Mexican H. capsulatum samples, while cluster II consisted of samples from Brazil and Argentina. Sub-cluster Ia included only fungal isolates from the migratory bat Tadarida brasiliensis. An average DNA mutation rate of 2.39 × 10(-9) substitutions per site per year was estimated for the 240-nt fragment for all H. capsulatum isolates. Nucleotide diversity analysis of the (GA)(n) and flanking regions from fungal isolates of each cluster and sub-cluster underscored the high similarity of cluster II (Brazil and Argentina), sub-clusters Ib, and Ic (Mexico). According to the genetic distances among isolates, a network of the 240-nt fragment was graphically represented by (GA)(n) length haplotype. This network showed an association between genetic variation and both the geographic distribution and the ecotype dispersion of H. capsulatum, which are related to the migratory behaviour of the infected bats studied.

  2. Insights into the preferential order of strand exchange in the Cre/loxP recombinase system: impact of the DNA spacer flanking sequence and flexibility

    NASA Astrophysics Data System (ADS)

    Abi-Ghanem, Josephine; Samsonov, Sergey A.; Pisabarro, M. Teresa

    2015-03-01

    The Cre/loxP system is widely used as a genetic tool to manipulate DNA. Cre recombinase catalyzes site-specific recombination between 34 bp loxP sites. Each loxP site is recognized by two Cre molecules assuming a cleaving (CreC) and non-cleaving (CreNC) activity. Despite the symmetry in the sequences of the arms of loxP, available biochemical data show strong evidence that the recombination reaction is asymmetric with a preferred strand exchange order. The asymmetry comes from the spacer separating the two sets of palindromic arms of the loxP sequence. However, it remains to be understood how this preferential order is established. We apply computational structure-based methods and perform a thorough detailed analysis of available structural and biochemical information on the Cre/loxP system in order to investigate such asymmetry in the recombination, and we propose a rationale to explain the determinants favoring the strand exchange order. We show that the structural properties of the DNA flanking sequence of the spacer guide the recombination, and we establish the role of residues R118, R121 and K122 from CreC, which contact the spacer region and by clamping the DNA inhibit the cleavage on the second arm of loxP. Our studies give an atomistic insight on the synapsis state of the recombination process in the Cre/loxP system and highlight the importance of the flexibility and other intrinsic properties of the flanking regions of the DNA spacer to establish a preferential strand exchange order.

  3. Bayesian analysis of interiors of HD 219134b, Kepler-10b, Kepler-93b, CoRoT-7b, 55 Cnc e, and HD 97658b using stellar abundance proxies

    NASA Astrophysics Data System (ADS)

    Dorn, Caroline; Hinkel, Natalie R.; Venturini, Julia

    2017-01-01

    Aims: Using a generalized Bayesian inference method, we aim to explore the possible interior structures of six selected exoplanets for which planetary mass and radius measurements are available in addition to stellar host abundances: HD 219134b, Kepler-10b, Kepler-93b, CoRoT-7b, 55 Cnc e, and HD 97658b. We aim to investigate the importance of stellar abundance proxies for the planetary bulk composition (namely Fe/Si and Mg/Si) on prediction of planetary interiors. Methods: We performed a full probabilistic Bayesian inference analysis to formally account for observational and model uncertainties while obtaining confidence regions of structural and compositional parameters of core, mantle, ice layer, ocean, and atmosphere. We determined how sensitive our parameter predictions depend on (1) different estimates of bulk abundance constraints and (2) different correlations of bulk abundances between planet and host star. Results: The possible interior structures and correlations between structural parameters differ depending on data and data uncertainty. The strongest correlation is generally found between size of rocky interior and water mass fraction. Given the data, possible water mass fractions are high, even for most potentially rocky planets (HD 219134b, Kepler-93b, CoRoT-7b, and 55 Cnc e with estimates up to 35%, depending on the planet). Also, the interior of Kepler-10b is best constrained with possible interiors similar to Earth. Among all tested planets, only the data of Kepler-10b and Kepler-93b allow to put a higher probability on the planetary bulk Fe/Si to be stellar compared to extremely sub-stellar. Conclusions: Although the possible ranges of interior structures are large, structural parameters and their correlations are constrained by the sparse data. The probability for the tested exoplanets to be Earth-like is generally very low. Furthermore, we conclude that different estimates of planet bulk abundance constraints mainly affect mantle composition and

  4. Cloning of the rice seed alpha-globulin-encoding gene: sequence similarity of the 5'-flanking region to those of the genes encoding wheat high-molecular-weight glutenin and barley D hordein.

    PubMed

    Nakase, M; Hotta, H; Adachi, T; Aoki, N; Nakamura, R; Masumura, T; Tanaka, K; Matsuda, T

    1996-05-08

    A genomic clone encoding the rice endosperm major globulin (alpha-globulin) with an apparent molecular mass of 26 kDa was isolated, and its nucleotide (nt) sequence and transcription start point (tsp) were determined. The tsp was identical to that of the gene encoding the wheat high-molecular-weight (HMW) glutenin subunit. The consensus '-300 element' and an A + T-rich sequence exist upstream from the TATA box in the 5'-flanking region. A nt sequence of about 130 bp in the 5'-flanking region was found to be markedly homologous to those of the genes encoding the wheat HMW glutenin subunit and barley D hordein.

  5. Evidence of flank failure deposit reactivation in a shield volcano. A favorable context for deep-seated landslide activation (La Réunion Island)

    NASA Astrophysics Data System (ADS)

    Belle, Pierre; Aunay, Bertrand; Famin, Vincent; Join, Jean-Lambert

    2014-05-01

    Giant flank failures are recurrent features of shield volcanoes, and their deposits (i.e. breccia), constitute a significant volume in a volcanic edifice. On La Réunion Island, the growth and development of Piton des Neiges volcano has been punctuated by several flank failure episodes. One of these failures is a deep-seated landslide (>200 Mm3) occurring nowadays in Grand Ilet, a plateau inhabited by 1 000 people in the cirque of Salazie, on the northern flank of Piton des Neiges. Here we present the results of a multidisciplinary study (structural geology and field mapping, GNSS monitoring, borehole logging) performed to characterize the geological structure the Grand Ilet landslide, and identify the instability factors that control this category of destabilization. Basic breccia deposits, up to 160 meters thick, constitute the main geological formation of the unstable mass. This breccia are cut by the headwall scar of the landslide, and covered by lava flows, indicating a minimum age of 200 kyr for the destabilization that produced the deposits. The breccia is consolidated out of the landslide area. The NE toe of the landslide is evidenced by an important compressional deformation of the base of the breccia, and striated surfaces in this deformed volume indicate a NE-direction of transport. In this deformed bulge, a clay-rich layer at the base of the breccia has been identified as the main slip plane. Using a video inspection of drill casings on three exploration boreholes, we reconstructed the 3D geometry of the slip plane at the base of the breccia. This reconstruction shows that the landslide plane has an average dip of 6° toward the NE. The displacement monitoring network shows that the unstable mass has a 5.5 km2 extension, with a variable azimuth of movement direction (N140° for the SW sector, and N45° for the NE sector). The planimetric displacements velocities range between 2 cm/year in the inner part of the unstable mass to 52 cm/year at the

  6. Connections between hyper-acid crater lakes and flank springs: new evidence from Rincón de la Vieja volcano (Costa Rica)

    NASA Astrophysics Data System (ADS)

    Martínez, M.; Fernández, E.; Sáenz, W.; van Bergen, M. J.; Ayres, G.; Pacheco, J. F.; Brenes, J.; Avard, G.; Malavassi, E.

    2012-04-01

    Rincón de la Vieja, a complex andesitic stratovolcano in NW Costa Rica, shows various hydrothermal surface manifestations that comprise: (1) A hyper-acid crater lake and subaerial fumaroles receiving direct input of fluids of magmatic origin, (2) Acid thermal discharges along the northeastern slopes of the volcano that feed the headwaters of the Cucaracho river, and (3) Small lakes and a geothermal field with bubbling-boiling mud pools, acid-sulfate springs, steaming ground and fumarolic emissions in a region on the western flank. Here the streams are of relatively low flow rate and their chemical signatures correspond to that of deep fluids from an extensive geothermal reservoir mixed with shallow meteoric water. Physico-chemical properties of the sulfate-chloride hyper-acid lake (T=28-58 °C; pH between 1.2 and <0, high TDS of 24,000-160,000 mg/kg) are consistent with a meteoric water body supplied by a significant input of chemical components derived from hydrolysis of magmatic volatiles and from intense rock leaching. The Cucaracho catchment receives input from warm acid brines with no free-gas phase but carrying a high load of hydrolyzed magmatic volatiles and rock-forming elements. One of these brines (Spring 4) is characterized by a sulfate-chloride chemical signature, medium temperatures of 27-38 °C, pH between 2 and 4 and TDS values between 780 and 1300 mg/L. Based on water and heat-balance considerations, chemical and stable-isotope signatures and groundwater transport modeling, it has been proposed that these acid springs represent brine water from the lake-hydrothermal system that is diluted by shallow groundwater permeating tephra layers (Kempter and Rowe, 2000). Since Rincóńs latest phreatomagmatic activity in 1983, episodes of phreatic eruptions from the crater lake have been registered in 1983-87, 1991, 1995, 1998 and 2011. Some of these eruptions (VEI 1) have expelled large quantities of lake water, triggering small to medium- sized fast

  7. Unique Thermophiles Supported by the Ocean Crustal Fluids Exiting From a Borehole in the Eastern Flank of Juan de Fuca Ridge.

    NASA Astrophysics Data System (ADS)

    Nakagawa, S.; Inagaki, F.; Suzuki, Y.; Takai, K.; Horikoshi, K.

    2005-12-01

    Very little is known about the potential of ocean crustal fluids on ridge flanks to sustain microbial ecosystem. An unprecedented chance to investigate the occurrence of microbes within the crustal fluids is given by a borehole observatory, CORK (Circulation Obviation Retrofit Kit). The CORK consists of two parts: instruments installed in the sealed part of the cased borehole drilled by the Ocean Drilling Program (ODP), and a data logger and fluids sampling port sitting on the seafloor. Recently, a study using the CORK suggested the presence of unique microorganisms in ~64 deg C of crustal fluids emanated from a 295-meter-deep borehole in the eastern flank of Juan de Fuca Ridge (35 Ma crust) (Cowen et al., 2003, Science, 299, 120-123). Most of the 16S rRNA gene detected in the fluids related to sulfate-reducing genera (Desulfotomaculum, Ammonifex, and Desulfonatronovibrio), implying that fluids circulating within aging ocean crust potentially support microbial sulfate-reduction. When we recovered the CORK during the Juan de Fuca cruise of Integrated Ocean Drilling Program (IODP), sulfide deposits attached to the CORK body was found. The microbial community in the sulfide deposits inferred by clone sequencing of environmental 16S rRNA genes was distinct from those hitherto reported in other microbial habitats including natural deep-sea vents on ridge crests and subduction zones, but similar in part with that reported in the fluids emanated from the same CORK. Most frequently retrieved clones of bacterial and archaeal 16S rRNA gene were related to Ammonifex and Methanococcales, respectively. Semi-quantitative cultivation experiments revealed that over 103 cells per cm3 of the sulfide deposits were culturable. Surprisingly, none of the microbes widely distributing in natural deep-sea hydrothermal environments, i.e. Thermococcales, Aquificales, and epsilon-Proteobacteria, could be detected or cultured. Culturable microbial community consisted mainly of

  8. Nucleotide sequence of the afimbrial-adhesin-encoding afa-3 gene cluster and its translocation via flanking IS1 insertion sequences.

    PubMed Central

    Garcia, M I; Labigne, A; Le Bouguenec, C

    1994-01-01

    The afa gene clusters encode afimbrial adhesins (AFAs) that are expressed by uropathogenic and diarrhea-associated Escherichia coli strains. The plasmid-borne afa-3 gene cluster is responsible for the biosynthesis of the AFA-III adhesin that belongs to the Dr family of hemagglutinins. Reported in this work is the nucleotide sequence of the 9.2-kb insert of the recombinant plasmid pILL61, which contains the afa-3 gene cluster cloned from a cystitis-associated E. coli strain (A30). The afa-3 gene cluster was shown to contain six open reading frame