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Sample records for florida citrus metadata

  1. Antagonists of Plant-parasitic Nematodes in Florida Citrus

    PubMed Central

    Walter, David Evans; Kaplan, David T.

    1990-01-01

    In a survey of antagonists of nematodes in 27 citrus groves, each with a history of Tylenchulus semipenetrans infestation, and 17 noncitrus habitats in Florida, approximately 24 species of microbial antagonists capable of attacking vermiform stages of Radopholus citrophilus were recovered. Eleven of these microbes and a species of Pasteuria also were observed attacking vermiform stages of T. semipenetrans. Verticillium chlamydosporium, Paecilomyces lilacinus, P. marquandii, Streptomyces sp., Arthrobotrys oligospora, and Dactylella ellipsospora were found infecting T. semipenetrans egg masses. Two species of nematophagous amoebae, five species of predatory nematodes, and 29 species of nematophagous arthropods also were detected. Nematode-trapping fungi and nematophagous arthropods were common inhabitants of citrus groves with a history of citrus nematode infestation; however, obligate parasites of nematodes were rare. PMID:19287759

  2. Antagonists of Plant-parasitic Nematodes in Florida Citrus.

    PubMed

    Walter, D E; Kaplan, D T

    1990-10-01

    In a survey of antagonists of nematodes in 27 citrus groves, each with a history of Tylenchulus semipenetrans infestation, and 17 noncitrus habitats in Florida, approximately 24 species of microbial antagonists capable of attacking vermiform stages of Radopholus citrophilus were recovered. Eleven of these microbes and a species of Pasteuria also were observed attacking vermiform stages of T. semipenetrans. Verticillium chlamydosporium, Paecilomyces lilacinus, P. marquandii, Streptomyces sp., Arthrobotrys oligospora, and Dactylella ellipsospora were found infecting T. semipenetrans egg masses. Two species of nematophagous amoebae, five species of predatory nematodes, and 29 species of nematophagous arthropods also were detected. Nematode-trapping fungi and nematophagous arthropods were common inhabitants of citrus groves with a history of citrus nematode infestation; however, obligate parasites of nematodes were rare.

  3. 78 FR 4305 - Common Crop Insurance Regulations; Florida Citrus Fruit Crop Insurance Provisions; Correction

    Federal Register 2010, 2011, 2012, 2013, 2014

    2013-01-22

    ... Corporation 7 CFR Part 457 RIN 0563-AC39 Common Crop Insurance Regulations; Florida Citrus Fruit Crop... Fruit. DATES: Effective Date: January 22, 2013. FOR FURTHER INFORMATION CONTACT: Tim Hoffmann, Director... corrections revised the Florida Citrus Fruit Crop Insurance Provisions that published on Friday, December...

  4. Protocol for introducing new and licensed citrus varieties into California. A Florida case study.

    Technology Transfer Automated Retrieval System (TEKTRAN)

    In the light of the current Huanglongbing (HLB) threat to the California (CA) citrus industry, and preliminary data indicating that some citrus varieties in Florida (FL) may possess some degree of tolerance to HLB, the California citrus growers indicated a strong interest in proactively introducing ...

  5. Entomopathogenic fungi infecting the Asian citrus psyllid, Diaphorina citri (Homoptera: Psyllidae), in Florida

    Technology Transfer Automated Retrieval System (TEKTRAN)

    The Asian citrus psyllid, Diaphorina citri is an invasive pest that vectors citrus greening disease. In 2005-2006 mycosed psyllids displaying two phenotypes were collected in central Florida. The major pathogen, identified by morphological and genetic analyses, was a novel isolate related to Hirsute...

  6. Florida Citrus Molasses as a Fermentation Substrate1

    PubMed Central

    Long, Sterling K.; Hill, E. C.; Wheaton, T. A.

    1967-01-01

    Samples of midseason Florida citrus molasses from 10 different manufacturing plants were studied during 2 years of production for suitability as fermentation substrates. They were analyzed for degrees Brix, pH, percentage of protein, and free amino acid content. The following ranges of values were obtained: degrees Brix, 65.4 to 73.0; pH, 4.2 to 6.4; and protein, 3.3 to 5.1%. Although the general characteristics of all samples were quite similar, the total free amino acid content and the number of amino acids differed from year to year and from plant to plant. The free amino acids consistently present were asparagine, aspartic acid, alanine, γ-amino-butyric, glycine, glutamic acid, proline, serine, and threonine. Occasionally found were arginine, histidine, isoleucine, leucine, lysine, phenylalanine, tyrosine, and valine. An extremely high level of proline was detected in all samples. PMID:16349724

  7. Adoption of safety eyewear among citrus harvesters in rural Florida.

    PubMed

    Monaghan, Paul F; Bryant, Carol A; McDermott, Robert J; Forst, Linda S; Luque, John S; Contreras, Ricardo B

    2012-06-01

    The community-based prevention marketing program planning framework was used to adapt an evidence-based intervention to address eye injuries among Florida's migrant citrus harvesters. Participant-observer techniques, other direct observations, and individual and focus group interviews provided data that guided refinement of a safety eyewear intervention. Workers were attracted to the eyewear's ability to minimize irritation, offer protection from trauma, and enable work without declines in productivity or comfort. Access to safety glasses equipped with worker-designed features reduced the perceived barriers of using them; deployment of trained peer-leaders helped promote adoption. Workers' use of safety glasses increased from less than 2% to between 28% and 37% in less than two full harvesting seasons. The combination of formative research and program implementation data provided insights for tailoring an existing evidence-based program for this occupational community and increase potential for future dissemination and worker protection.

  8. Detection of Candidatus Liberibacter asiaticus in Diaphorina citri and its importance in the management of Citrus Huanglongbing in Florida

    Technology Transfer Automated Retrieval System (TEKTRAN)

    Citrus huanglongbing (HLB or citrus greening) is a highly destructive disease that has been spreading in both Florida and Brazil. Its psyllid vector, Diaphorina citri, has spread to Texas and Mexico thus threatening the future of citrus production elsewhere in North America. Even though, sensitive d...

  9. Exacerbation of citrus canker by citrus leafminer, Phyllocnistis citrella in Florida

    Technology Transfer Automated Retrieval System (TEKTRAN)

    Citrus canker (caused by Xanthomonas citri subsp. citri, Xcc) is an important bacterial disease of citrus that is spread naturally by rain and wind. Damage to citrus leaves by the citrus leafminer (CLM) , Phyllocnistis citrella Stainton (Lepidoptera: Gracillariidae), has been shown to promote infect...

  10. Postplant Fumigation with DBCP for Citrus Nematode Control in Florida

    PubMed Central

    Tarjan, A. C.; O'Bannon, J. H.

    1974-01-01

    Eleven citrus groves of diverse varieties and ages infected with Tylenchulus semipenetrans growing in differing soils in Florida were treated with three rates of 1,2-dibromo-3-chloropropane (DBCP) applied by various means. Yield, fruit size, and T. semipenetrans populations in the roots were compared between DBCP-treated and untreated trees over a period of I-3 yr. Maximum fruit size and yield were obtained by applying DBCP at 38-58 kg/hectare (ha) (34-52 lb/acre); whereas best nematode control was with a rate of 77 kg/ha (69 lb/acre). Application of chemical emulsion with a special, drilled, low-profile sprinkler irrigation ground pipe was the most suitable method. Effect of DBCP treatment generally lasted for 3 yr. A mean annual I. 1% increase in fruit diameter, 15.2% increase in fruit yield and a 55.7% decrease incitrus nematode populations was found for D BC P-treated trees in contrast to untreated trees. PMID:19319363

  11. 78 FR 22411 - Common Crop Insurance Regulations; Florida Citrus Fruit Crop Insurance Provisions; Correction

    Federal Register 2010, 2011, 2012, 2013, 2014

    2013-04-16

    ... / Tuesday, April 16, 2013 / Rules and Regulations#0;#0; ] DEPARTMENT OF AGRICULTURE Federal Crop Insurance Corporation 7 CFR Part 457 RIN 0563-AC39 Common Crop Insurance Regulations; Florida Citrus Fruit Crop Insurance Provisions; Correction AGENCY: Federal Crop Insurance Corporation, USDA. ACTION: Final...

  12. Population levels of Asian Citrus Psyllid in Florida, Texas and Puerto Rico as indicated by yellow sticky traps deployed in citrus

    Technology Transfer Automated Retrieval System (TEKTRAN)

    A study was conducted to compare population levels of Asian citrus psyllid, Diaphorina citri Kuwayama (Hemiptera: Psyllidae) in Florida, Texas and Puerto Rico. Four grove locations were studied in Florida, one location near each of the following cities: Leesburg, Vero Beach, Fort Pierce, and Immoka...

  13. Growth measurements and disease severity metrics of citrus identifies resistance and tolerance to Huanglongbing (HLB) in a Florida field planting

    Technology Transfer Automated Retrieval System (TEKTRAN)

    In a Ft. Pierce, Florida field planting, growth and Huanglongbing (HLB) severity were assessed as indicators of HLB-tolerance on progenies of 83 seed-source genotypes (henceforth “parent genotypes”) of citrus and citrus-relatives from the Riverside, California genebank. Trees were exposed to infecte...

  14. Bionomics of Asian citrus psyllid (Hemiptera: Liviidae) associated with orange jasmine hedges in southest central Florida, with special reference to biological control by Tamarixia radiata

    Technology Transfer Automated Retrieval System (TEKTRAN)

    The Asian citrus psyllid (ACP), Diaphorina citri Kuwayama, is an important pest in Florida because it vectors bacteria responsible for citrus huanglongbing disease. In addition to infesting citrus, orange jasmine (Murraya paniculata) is one of ACP’s favorite host plants and is widely grown as an orn...

  15. Water Quality and Evaluation of Pesticides in Lakes in the Ridge Citrus Region of Central Florida

    USGS Publications Warehouse

    Choquette, Anne F.; Kroening, Sharon E.

    2009-01-01

    Water chemistry, including major inorganic constituents, nutrients, and pesticide compounds, was compared between seven lakes surrounded by citrus agriculture and an undeveloped lake on the Lake Wales Ridge (herein referred to as the Ridge) in central Florida. The region has been recognized for its vulnerability to the leaching of agricultural chemicals into the subsurface due to factors including soils, climate, and land use. About 40 percent of Florida's citrus cultivation occurs in 'ridge citrus' areas characterized by sandy well drained soils, with the remainder in 'flatwoods citrus' characterized by high water tables and poorly drained soils. The lakes on the Ridge are typically flow-through lakes that exchange water with adjacent and underlying aquifer systems. This study is the first to evaluate the occurrence of pesticides in lakes on the Ridge, and also represents one of the first monitoring efforts nationally to focus on regional-scale assessment of current-use pesticides in small- to moderate-sized lakes (5 to 393 acres). The samples were collected between December 2003 and September 2005. The lakes in citrus areas contained elevated concentrations of major inorganic constituents (including alkalinity, total dissolved solids, calcium, magnesium, sodium, potassium, chloride, and sulfate), total nitrogen, pH, and pesticides compared to the undeveloped lake. Nitrate (as N) and total nitrogen concentrations were typically elevated in the citrus lakes, with maximum values of 4.70 and 5.19 mg/L (milligrams per liter), respectively. Elevated concentrations of potassium, nitrate, and other inorganic constituents in the citrus lakes likely reflect inputs from the surficial ground-water system that originated predominantly from agricultural fertilizers, soil amendments, and inorganic pesticides. A total of 20 pesticide compounds were detected in the lakes, of which 12 compounds exceeded the standardized reporting level of 0.06 ug/L (microgram per liter). Those

  16. Hydrology of the Citrus Park Quadrangle, Hillsborough County, Florida

    USGS Publications Warehouse

    Corral, M.A.; Thompson, T.H.

    1988-01-01

    Rapid increases in population and development in the Citrus Park quadrangle northwest of Tampa have increased the demand for water from the surficial and Upper Floridan aquifers, while at the same time decreasing the amount of wetlands and agricultural or forested lands that formerly provided recharge to these aquifers. Because the study area is underlain by soluble deposits, sinkholes and small closed depressions are common surface features. Some of the lakes in the area are remnants of ancient sinkholes. Four streams drain the area. Two of the streams have been channelized to reduce the risk of local flooding. Pumping from three municipal well fields within the study area and from three nearby well fields has lowered the potentiometric surface of the Upper Floridan aquifer. The pumping also lowers the water table levels by inducing recharge from the surficial aquifer to the Upper Floridan aquifer. Heavy pumpage may prompt sinkhole activity, or in areas near the coast , induce saltwater intrusion. Water quality of streams and groundwater is generally good except in the vicinity of landfills and where saltwater encroachment into the principal water bearing unit has occurred along the coast. (USGS)

  17. Hydrologic reconnaissance of Tsala Apopka Lake, Citrus County, Florida

    USGS Publications Warehouse

    Rutledge, A.T.

    1977-01-01

    The swamps, marshes, and open waters of Tsala Apopka Lake, Florida, were mapped and the hydrologic connection between the lake and the Floridan limestone aquifer was studied from October 1975 to September 1976. Tsala Apopka Lake is a series of shallow , interconnected lakes, ponds, and marshes whose water surface slopes northward at 0.5 foot per mile. According to aerial photographs of December 1972, only 6 percent of the 103 square miles of study area is covered by open water. Open water is abundant along the western side of the lake, dense and sparse marshes occupy most of the lake area, and swamps occupy a thick zone around the Withlacoochee River which borders the lake to the east. Only a small fraction of the total surface flow occurs through the lake. The average lake outflow through S-351 canal is 23.6 cfs; while the average river flow at Holder is 714 cfs. Tsala Apopka Lake is hydraulically connected to the Floridan aquifer. At low flow, the major source of water in the river is ground water from the Floridan aquifer. The specific conductance of water in the Floridan aquifer averages 250-350 umho/cm (micromhos per centimeter) at 25C in this area. The specific conductance of water in the Withlacoochee River near Holder averages 268 umho/cm at 25C, while water in Tsala Apopka Lake at Hernando averages 139 umho/cm at 25C. (Woodard-USGS)

  18. Calcium sulfate crystallization along citrus root channels in a Florida soil exhibiting acid sulfate properties

    SciTech Connect

    Syslo, S.K.; Myhre, D.L.; Harris, W.G.

    1988-02-01

    The authors observed euhedral crystals in Manatee soil in a citrus grove in St. Lucie County, Florida. The material was identified as gypsum (CaSO/sub 4/ /times/ 2H/sub 2/O) using x-ray diffraction and infrared spectra. Photomicrography and scanning electron microscopy revealed that gypsum accumulated both in old root channels and within citrus root tissue of the Btg horizon. The subsurface horizons had elevated sulfate levels, a low initial pH, a drop (0.5 unit) in pH upon air-drying. Electrical conductivity paralleled the concentration of water-soluble sulfate. High levels of calcium and sulfate occurred for horizons above the water table. This accumulation is attributed to groundwater bearing these ions and subsequently discharging them to the overlying soil. Dead citrus roots appear to act as wicks to aid water transfer from lower to higher horizons. The roots and their empty channels provide spaces in which the gypsum can precipitate if the concentrations of calcium and sulfate in the evaporating groundwater exceed the solubility product of gypsum.

  19. The Florida citrus soil water atmosphere plant (SWAP) project: final summary of cumulative yields and tree health

    Technology Transfer Automated Retrieval System (TEKTRAN)

    The Florida Citrus Soil Water Atmosphere Plant (SWAP) Project at the Fort Pierce had three blocks each of soil tillage treatments of shallow tilled (ST), deep tilled (DT), and deep tilled plus lime (DTL) on a Spodosol (Oldsmar fine sandy loam). Each block had three adjacent submerged subsurface pla...

  20. Whole genome sequence of “Candidatus Liberibacter asiaticus” from a huanglongbing-affected citrus tree in Central Florida

    Technology Transfer Automated Retrieval System (TEKTRAN)

    The draft genome sequence of “Candidatus Liberibacter asiaticus” strain FL17, isolated from an HLB-affected citrus tree in central Florida, was determined. The FL17 genome comprised 1,227,253 bp with a G+C content of 36.5%, 1,175 predicted open reading frames, and 53 RNA genes....

  1. Historical Perspective of the Florida Citrus Industry and the Impact of Mechanical Harvesting on the Demand for Labor.

    ERIC Educational Resources Information Center

    Dow, J. Kamal

    The Florida Citrus Crop is expected to increase 50 percent by 1980, resulting in labor shortages unless mechanical harvesting is used. This report uses a mathematical model of costs and revenues to compare the profitability of different mechanical systems with that of the manual system. The analysis shows that if present trends continue,…

  2. Populations of sharpshooters in two citrus groves in east-central Florida as indicated by yellow sticky card traps

    Technology Transfer Automated Retrieval System (TEKTRAN)

    Three sharpshooter species were captured on yellow sticky card traps in two citrus groves in east-central Florida: Homalodisca insolita, H. vitripennis and Oncometopia nigricans. H. vitripennis and O. nigricans were relatively common and H. vitripennis relatively abundant over a three year period ...

  3. The Florida citrus soil water atmosphere plant (SWAP) project: review and final summary of yields and tree health

    Technology Transfer Automated Retrieval System (TEKTRAN)

    The Florida Citrus Soil Water Atmosphere Plant (SWAP) Project at the UF-IFAS Indian River Research and Education Center had three blocks each of soil tillage (mixing ) treatments of shallow tilled (ST), deep tilled (DT), and deep tilled plus lime (DTL) on a Spodosol (Oldsmar fine sandy loam). Each ...

  4. Risk assessment of various insecticides used for management of Asian citrus psyllid, Diaphorina citri in Florida citrus, against honey bee, Apis mellifera.

    PubMed

    Chen, Xue Dong; Gill, Torrence A; Pelz-Stelinski, Kirsten S; Stelinski, Lukasz L

    2017-01-23

    The Asian citrus psyllid, Diaphorina citri Kuwayama (Hemiptera: Liviidae), is a major pest of citrus trees worldwide. A wide variety of insecticides are used to manage D. citri populations within citrus groves in Florida. However, in areas shared by citrus growers and beekeepers the use of insecticides may increase the risks of Apis mellifera  L. (Hymenoptera: Apidae) loss and contaminated honey. The objective of this research was to determine the environmental toxicity of insecticides, spanning five different modes of action used to control D. citri, to A. mellifera. The insecticides investigated were imidacloprid, fenpropathrin, dimethoate, spinetoram and diflubenzuron. In laboratory experiments, LD50 values were determined and ranged from 0.10 to 0.53 ng/μl for imidacloprid, fenpropathrin, dimethoate and spinetoram. LD50 values for diflubenzuron were >1000 ng/μl. Also, a hazard quotient was determined and ranged from 1130.43 to 10893.27 for imidacloprid, fenpropathrin, dimethoate, and spinetoram. This quotient was <0.447 for diflubenzuron. In field experiments, residual activity of fenpropathrin and dimethoate applied to citrus caused significant mortality of A. mellifera 3 and 7 days after application. Spinetoram and imidacloprid were moderately toxic to A. mellifera at the recommended rates for D. citri. Diflubenzuron was not toxic to A. mellifera in the field as compared with untreated control plots. Phenoloxidase (PO) activity of A. mellifera was higher than in untreated controls when A. mellifera were exposed to 14 days old residues. The results indicate that diflubenzuron may be safe to apply in citrus when A. mellifera are foraging, while most insecticides used for management of D. citri in citrus are likely hazardous under various exposure scenarios.

  5. 78 FR 55241 - Foreign-Trade Zone 79-Tampa, Florida, Foreign-Trade Subzone 79C-Cutrale Citrus Juices USA, Inc...

    Federal Register 2010, 2011, 2012, 2013, 2014

    2013-09-10

    ... From the Federal Register Online via the Government Publishing Office DEPARTMENT OF COMMERCE Foreign-Trade Zones Board Foreign-Trade Zone 79--Tampa, Florida, Foreign-Trade Subzone 79C--Cutrale Citrus... to the existing activation limit of FTZ 79, on behalf of Cutrale Citrus Juices USA, Inc....

  6. Spatial relationships between entomopathogenic nematodes and nematophagous fungi in Florida citrus orchards.

    PubMed

    Pathak, Ekta; Campos-Herrera, Raquel; El-Borai, Fahiem E; Duncan, Larry W

    2017-03-01

    Relationships between entomopathogenic nematodes (EPNs), nematophagous fungi (NF) and soil physical and chemical properties were studied in a survey of 53 citrus orchards in central ridge and flatwoods ecoregions of Florida. Seven species of NF associated with nematodes were quantified directly using a real time qPCR assay. All nematophagous fungi studied except Arthrobotrys musiformis and Hirsutella rhossiliensis were frequently detected (24-56%) in both regions. Paecilomyces lilacinus and Gamsylella gephyropagumwere encountered more frequently in the flatwoods (P=0.03) and on the ridge (P=0.02), respectively. Redundancy analysis revealed seven abiotic and biotic factors as significantly related to the NF occurrence. Multiple regression of fungi on these variables explained 78%, 66%, 48%, 36%, 23% and 4% of the variation in Catenaria sp., A. musiformis, A. dactyloides, P. lilacinus, A. oligospora and G. gepharopagum, respectively. When the data from citrus were pooled with those reported previously from natural areas and subjected to principle component analysis, the first two principle components explained 43% of the variation in NF communities. The surveys (citrus vs natural areas) were discriminated by PC2 (P<0.001) and the ecoregion by PC1 (P<0.002), and all but one NF species were related (P<0.01) to one or both components. NF communities tended to have more species and greater diversity in the flatwoods, where EPN richness and diversity were the least. However, the strength of associations between individual EPN and NF species as measured by SADIE reflected the associations between each species and ground water depth, suggesting that ecoregion preferences affected the species associations. Within each ecoregion, significant relationships between the individual NF and EPN species measured by stepwise regression tended to be positive. The results did not support the hypothesis that NF modulate the spatial patterns of EPN species between or within these two

  7. Economic consequences of improved temperature forecasts: An experiment with the Florida citrus growers (control group results). [weather forecasting

    NASA Technical Reports Server (NTRS)

    1977-01-01

    A demonstration experiment is being planned to show that frost and freeze prediction improvements are possible utilizing timely Synchronous Meteorological Satellite temperature measurements and that this information can affect Florida citrus grower operations and decisions. An economic experiment was carried out which will monitor citrus growers' decisions, actions, costs and losses, and meteorological forecasts and actual weather events and will establish the economic benefits of improved temperature forecasts. A summary is given of the economic experiment, the results obtained to date, and the work which still remains to be done. Specifically, the experiment design is described in detail as are the developed data collection methodology and procedures, sampling plan, data reduction techniques, cost and loss models, establishment of frost severity measures, data obtained from citrus growers, National Weather Service, and Federal Crop Insurance Corp., resulting protection costs and crop losses for the control group sample, extrapolation of results of control group to the Florida citrus industry and the method for normalization of these results to a normal or average frost season so that results may be compared with anticipated similar results from test group measurements.

  8. South Florida Information Access (SOFIA) metadata for the U.S. Geological Survey Greater Everglades place-based studies

    USGS Publications Warehouse

    Stapleton, Jo Anne; Sonenshein, Roy

    2004-01-01

    Beginning in 1995 the U.S. Geological Survey (USGS) funded scientific research to support the restoration of the Greater Everglades area and to supply decision makers and resource mangers with sound data on which to base their actions. However, none of the research and resulting data is useful if it can?t be discovered, can?t be assessed for utility in an application, can?t be accessed, or is in an undetermined format. The decision was made early in the USGS Place-Based Studies (PBS) program to create a ?one-stop? entry for information and data about USGS research results. To facilitate the discovery process some mechanism was needed to allow standardized queries about data. The FGDC metadata standard has been used to document the South Florida PBS data from the beginning.

  9. Bionomics of Asian Citrus Psyllid (Hemiptera: Liviidae) Associated with Orange Jasmine Hedges in Southeast Central Florida, with Special Reference to Biological Control by Tamarixia radiata.

    PubMed

    Hall, David G; Rohrig, Eric

    2015-06-01

    The Asian citrus psyllid, Diaphorina citri Kuwayama, is an important pest in Florida because it transmits bacteria responsible for citrus huanglongbing disease. In addition to infesting citrus, orange jasmine (Murraya exotica L.) is one of Asian citrus psyllid's preferred host plants and is widely grown as an ornamental hedge. We report on Asian citrus psyllid bionomics over three years at five urban plantings of orange jasmine and on biological control of Asian citrus psyllid by a parasitoid Tamarixia radiata (Waterston). T. radiata had been released in Florida shortly after Asian citrus psyllid was first found, and the parasitoid was known to be established at each planting. Additionally, three new T. radiata haplotypes were released every 3 wk at three plantings during the first study year (one haplotype per planting, over all releases an average of 17 parasitoids per linear meter of hedge); all three haplotypes were released at a fourth planting beginning midway through the study (over all releases, an average combined total of 202 parasitoids per linear meter of hedge). Asian citrus psyllid populations were present year-round at each planting, often at large levels. Such plantings may pose risk to commercial citrus as Asian citrus psyllid reservoirs. Releases of the new haplotypes did not cause any measurable reduction in Asian citrus psyllid population levels during the study, and ironically percentage parasitism was generally highest at a planting where no releases were made. Higher release rates might have been more effective. The probability is discussed that repetitive pruning of orange jasmine reduced the full potential of T. radiata against Asian citrus psyllid in this study.

  10. Fluorescent tracer evaluation of chemical protective clothing during pesticide applications in central Florida citrus groves.

    PubMed

    Fenske, R A; Birnbaum, S G; Methner, M M; Lu, C; Nigg, H N

    2002-08-01

    Chemical protective clothing (CPC) is often recommended as a method of exposure mitigation among pesticide applicators. This study evaluated four CPC regimens (cotton work shirts and work pants, cotton/polyester coveralls, and two non-woven garments) during 33 airblast applications of the organophosphorus insecticide ethion in central Florida citrus groves. CPC performance was determined by measurement of fluorescent tracer deposition on skin surfaces beneath garments with a video imaging analysis instrument (VITAE system), and by alpha-cellulose patches placed outside and beneath the garments. Non-woven coveralls allowed significantly greater exposure than did traditional woven garments, primarily because of design factors (e.g., large sleeve and neck openings). The greatest exposure occurred on the forearms beneath the non-woven garments. Fabric penetration was detected for all test garments; 5% to 7% of the ethion measured outside the garments was found beneath the garments. The clothing materials tested were not chemically resistant under these field conditions. Exposurepathways that would probably be undetected by the patch technique were characterized effectively with fluorescent tracers and video imaging analysis. However, the patch technique was more sensitive in detecting fabric penetration. CPC garments have been improved since this study was conducted, but performance testing under field conditions is not widespread. Workers conducting airblast applications would be better protected by closed cab systems or any technology that places an effective barrier between the worker and the pesticide spray.

  11. Economic consequences of improved temperature forecasts: An experiment with the Florida citrus growers (an update of control group results)

    NASA Technical Reports Server (NTRS)

    Braen, C.

    1978-01-01

    The economic experiment, the results obtained to date and the work which still remains to be done are summarized. Specifically, the experiment design is described in detail as are the developed data collection methodology and procedures, sampling plan, data reduction techniques, cost and loss models, establishment of frost severity measures, data obtained from citrus growers, National Weather Service and Federal Crop Insurance Corp. Resulting protection costs and crop losses for the control group sample, extrapolation of results of control group to the Florida citrus industry and the method for normalization of these results to a normal or average frost season so that results may be compared with anticipated similar results from test group measurements are discussed.

  12. Citrus blight research

    Technology Transfer Automated Retrieval System (TEKTRAN)

    With HLB now occurring throughout Florida citrus groves, citrus blight has been getting less attention even though the problem still exists. In fact, the combination of HLB and citrus blight has compounded the problem that the citrus industry is facing with decreased yields, small fruit size and tre...

  13. Incidence of invasive Asian citrus psyllid, Diaphorina citri (Hemiptera: Psyllidae) and its introduced parasitoid Tamarixia radiata (Hymenoptera: Eulophidae) in Florida citrus

    Technology Transfer Automated Retrieval System (TEKTRAN)

    The Asian citrus psyllid (ACP), Diaphorina citri Kuwayama (Hemiptera: Psyllidae) vectors the bacterium Candidatus Liberibacter asiaticus, one of the causal organisms of Huanglongbing or citrus greening, a devastating disease of citrus. A eulophid parasitoid, Tamarixia radiata Waterson, was imported ...

  14. Residue dynamics of acephate and methamidophos in urban dooryard citrus foliage, Pompano Beach, Florida--August-September 1978.

    PubMed

    Fitzpatrick, G E; Bogan, M D

    1980-06-01

    Residues of acephate and its toxic metabolite methamidophos, attributable to the State-Federal program for eradication of the citrus blackfly (CBF) [Aleurocanthus woglumi Ashby] on citrus foliage, were assessed in urban areas in Pompano Beach, Florida. Eighteen dooryard citrus trees were sampled on two line transects, each ca 1.6 km long, along two city streets. The trees were sampled twice monthly for five months, beginning before chemical treatments were applied, continuing through the acephate treatment period, and ending when residues decreased below the limits of detection. Acephate and methamidophos residues, as high as 302.5 ppm and 15.8 ppm, respectively, were detected on leaves within one day after the first of a series of three treatments. Significant conversion of acephate to methamidophose was observed. Of the 143 samples collected, 114 contained measurable residues of both compounds; methamidophos accounted for an average of 19 percent of the total residues. Both compounds degraded rapidly, however, and residues averaged below 1 ppm approximately four weeks after the third treatment in the series. Average foliar half-lives for acephate and methamidophos were 8.93 days (SD = 2.52) and 8.40 days (SD = 2.55), respectively.

  15. 78 FR 38922 - Foreign-Trade Zone 79-Tampa, Florida, Foreign-Trade Subzone 79C-Cutrale Citrus Juices USA, Inc...

    Federal Register 2010, 2011, 2012, 2013, 2014

    2013-06-28

    ... From the Federal Register Online via the Government Publishing Office DEPARTMENT OF COMMERCE Foreign-Trade Zones Board Foreign-Trade Zone 79--Tampa, Florida, Foreign-Trade Subzone 79C--Cutrale Citrus Juices USA, Inc., Application for Additional Subzone Sites An application has been submitted to...

  16. Economic consequences of improved temperature forecasts: An experiment with the Florida citrus growers (control group results). Executive summary. [weather forecasting

    NASA Technical Reports Server (NTRS)

    1977-01-01

    A demonstration experiment is being planned to show that frost and freeze prediction improvements are possible utilizing timely Synchronous Meteorological Satellite temperature measurements and that this information can affect Florida citrus grower operations and decisions so as to significantly reduce the cost for frost and freeze protection and crop losses. The design and implementation of the first phase of an economic experiment which will monitor citrus growers decisions, actions, costs and losses, and meteorological forecasts and actual weather events was carried out. The economic experiment was designed to measure the change in annual protection costs and crop losses which are the direct result of improved temperature forecasts. To estimate the benefits that may result from improved temperature forecasting capability, control and test groups were established with effective separation being accomplished temporally. The control group, utilizing current forecasting capability, was observed during the 1976-77 frost season and the results are reported. A brief overview is given of the economic experiment, the results obtained to date, and the work which still remains to be done.

  17. Monitoring for Insecticide Resistance in Asian Citrus Psyllid (Hemiptera: Psyllidae) Populations in Florida.

    PubMed

    Kanga, Lambert H B; Eason, Julius; Haseeb, Muhammad; Qureshi, Jawwad; Stansly, Philip

    2016-04-01

    The development of insecticide resistance in Asian citrus psyllid, Diaphorina citri Kuwayama, populations is a serious threat to the citrus industry. As a contribution to a resistance management strategy, we developed a glass vial technique to monitor field populations of Asian citrus psyllid for insecticide resistance. Diagnostic concentrations needed to separate susceptible genotypes from resistant individuals were determined for cypermethrin (0.5 μg per vial), malathion (1.0 μg per vial), diazinon (1.0 μg per vial), carbaryl (1.0 μg per vial), carbofuran (0.1 μg per vial), methomyl (1.0 μg per vial), propoxur (1.0 μg per vial), endosulfan (1.0 μg per vial), imidacloprid (0.5 μg per vial), acetamiprid (5.0 μg per vial), chlorfenapyr (2.5 μg per vial), and fenpyroximate (2.5 μg per vial). In 2014, resistance to two carbamate insecticides (carbaryl and carbofuran), one organophosphate (malathion), one pyrethroid (cypermethrin), and one pyrazole (fenpyroximate) was detected in field populations of Asian citrus psyllid in Immokalee, FL. There was no resistance detected to diazinon, methomyl, propoxur, endosulfan, imidacloprid, and chlorfenapyr. The levels of insecticide resistance were variable and unstable, suggesting that resistance could be successfully managed. The results validate the use of the glass vial bioassay to monitor for resistance in Asian citrus psyllid populations and provide the basis for the development of a resistance management strategy designed to extend the efficacy of all classes of insecticides used for control of the Asian citrus psyllid.

  18. 7 CFR 457.107 - Florida citrus fruit crop insurance provisions.

    Code of Federal Regulations, 2013 CFR

    2013-01-01

    .... Weather Service reporting station operating nearest to the grove at the time of damage. Freeze. The... citrus fruit from the ground. Hurricane. A windstorm classified by the U.S. Weather Service as a... that has sustained speeds exceeding 58 miles per hour (50 knots) recorded at the U.S. National...

  19. Algal turf scrubbers: Periphyton production and nutrient recovery on a South Florida citrus farm

    Technology Transfer Automated Retrieval System (TEKTRAN)

    There is a strong need to develop strategies that reduce nutrient loading to Florida’s waters. The purpose of this study was to investigate the nutrient-removing ability and growth rate of periphyton, grown on an Algal Turf Scrubber (ATSTM) that received runoff from a citrus orchard operated by the ...

  20. Isolation and characterization of beneficial bacteria associated with citrus roots in Florida.

    PubMed

    Trivedi, Pankaj; Spann, Timothy; Wang, Nian

    2011-08-01

    Cultivable diversity of bacteria associated with citrus was investigated as part of a larger study to understand the roles of beneficial bacteria and utilize them to increase the productive capacity and sustainability of agro-ecosystems. Citrus roots from Huanglongbing (HLB) diseased symptomatic and asymptomatic citrus were used in this study. A total of 227 and 125 morphologically distinct colonies were isolated and characterized from HLB asymptomatic and symptomatic trees, respectively. We observed that the frequency of bacterial isolates possessing various plant beneficial properties was significantly higher in the asymptomatic samples. A total of 39 bacterial isolates showing a minimum of five beneficial traits related to mineral nutrition [phosphate (P) solubilization, siderophore production, nitrogen (N) fixation], development [indole acetic acid (IAA) synthesis], health [production of antibiotic and lytic enzymes (chitinase)], induction of systemic resistance [salicylic acid (SA) production], stress relief [production of 1-amino-cyclopropane-1-carboxylate deaminase] and production of quorum sensing [N-acyl homoserine lactones] signals were characterized. A bioassay using ethidium monoazide (EMA)-qPCR was developed to select bacteria antagonistic to Candidatus Liberibacter asiaticus. Using the modified EMA-qPCR assay, we found six bacterial isolates showing maximum similarity to Paenibacillus validus, Lysinibacillus fusiformis, Bacillus licheniformis, Pseudomonas putida, Microbacterium oleivorans, and Serratia plymutica could significantly reduce the population of viable Ca. L. asiaticus in HLB symptomatic leaf samples. In conclusion, we have isolated and characterized multiple beneficial bacterial strains from citrus roots which have the potential to enhance plant growth and suppress diseases.

  1. Eupalopsellidae and Stigmaeidae (Acari: Prostigmata) within citrus orchards in Florida: species distribution, relative and seasonal abundance within trees, associated vines, and ground cover plants.

    PubMed

    Childers, Carl C; Ueckermann, Eduard A

    2014-10-01

    Seven citrus orchards on reduced- to no-pesticide spray programs were sampled for predacious mites in the families Eupalopsellidae and Stigmaeidae (Acari: Prostigmata) in central and south central Florida. Inner and outer canopy leaves, fruit, twigs, and trunk scrapings were sampled monthly between August 1994 and January 1996. Open flowers were sampled in March from five of the sites. Two species of eupalopsellid mites (Exothorhis caudata Summers and Saniosulus harteni (van-Dis and Ueckermann)) were identified from 252 specimens collected within citrus tree canopies within the seven citrus orchards of which 249 were E. caudata. Only two E. caudata were collected from ground cover plants within five of the seven orchards. Eight species of Stigmaeidae were identified from 5,637 specimens: Agistemus floridanus Gonzalez, A. terminalis Gonzalez, Eustigmaeus arcuata (Chandhri), E. sp. near arcuata, E. segnis (Koch), Mediostigmaeus citri (Rakha and McCoy), Stigmaeus seminudus Wood, and Zetzellia languida Gonzalez were collected from within citrus tree canopies from seven orchard sites. Agistemus floridanus was the only species in either family that was abundant with 5,483 collected from within citrus tree canopies compared with only 39 from vine or ground cover plants. A total of 431 samples from one or more of 82 vines and ground cover plants were sampled monthly between September 1994 and January 1996 in five of these orchards and one or more eupalopsellids or stigmaeids were collected from 19 of these plants. Richardia brasiliensis (Meg.) Gomez had nine A. floridanus from 5 of 25 samples collected from this plant. Solanum sp. had five A. floridanus from three samples taken. Both eupalopsellid and stigmaeid species numbers represented <1 % of the total numbers of phytoseiid species taken from the same plants. The two remaining orchards were on full herbicide programs and ground cover plants were absent. Agistemus floridanus was more abundant in the citrus orchards

  2. Hydrogeology and simulated effects of ground-water withdrawals for citrus irrigation, Hardee and De Soto counties, Florida

    USGS Publications Warehouse

    Metz, P.A.

    1995-01-01

    The hydrogeology of Hardee and De Soto Counties in west-central Florida was evaluated, and a ground-water flow model was developed to simulate the effects of expected increases in ground-water withdrawals for citrus irrigation on the potentiometric surfaces of the intermediate aquifer system and the Upper Floridan aquifer. In 1988, total citrus acreage in Hardee and De Soto Counties was 89,041 acres. By the year 2020, citrus acreage is projected to increase to 130,000 acres. Ground water is the major source of water supply in the study area, and 94 percent of the ground-water withdrawn in the area is used for irrigation purposes. The principal sources of ground water in the study area are the surficial aquifer, the intermediate aquifer system, and upper water-yielding units of the Floridan aquifer system, commonly referred to as the Upper Floridan aquifer. The surficial aquifer is a permeable hydrogeo1ogic unit contiguous with land surface that is comprised predominately of surficial quartz sand deposits that generally are less than 100 feet thick. The intermediate aquifer system is a somewhat less permeable hydrogeologic unit that lies between and retards the exchange of water between the overlying surficial aquifer and the underlying Upper Floridan aquifer. Thickness of the intermediate aquifer system ranges from about 200 to 500 feet and transmissivity ranges from 400 to 7,000 feet squared per day. The highly productive Upper Floridan aquifer consists of 1,200 to 1,400 feet of solution-riddled and fractured limestone and dolomite. Transmissivity values for this aquifer range from 71,000 to 850,000 feet squared per day. Wells open to the Upper Floridan aquifer. the major source of water in the area, can yield as much as 2,500 gallons of water per minute. The potential effects of projected increases in water withdrawals for citrus irrigation on groundwater heads were evaluated by the use of a quasi-three-dimensional, finite-difference, ground-water flow model. The

  3. 7 CFR 457.107 - Florida citrus fruit crop insurance provisions.

    Code of Federal Regulations, 2014 CFR

    2014-01-01

    ... knots) recorded at the U.S. National Weather Service (NWS) reporting station (reported as MAX SUST (KT)), the Florida Automated Weather Network (FAWN) reporting station (reported as 10m Wind (mph)), or any... classified by the U.S. Weather Service as a hurricane. Intended use. The producer's expected end use...

  4. Saltwater intrusion in the Floridan aquifer, coastal Citrus and Hernando Counties, Florida, 1975

    USGS Publications Warehouse

    Mills, L.R.; Ryder, Paul D.

    1977-01-01

    The coastal parts of Citrus and Hernando Counties, Fla., are undergoing extensive urban development along U.S. Highway 19. The Floridan aquifer, a thick sequence of limestone and dolomite , is the principal source of water supply for the coastal parts of these two counties. The construction of canals that penetrate the Floridan aquifer, deficient rainfall during 1964-75, and pumping of ground water, have caused saltwater to intrude the aquifer. A map shows the inland extend of that intrusion as of 1975. The report is based on field data collected in 1964, 1973, and 1975. (Woodard-USGS)

  5. Pesticides and nitrate in groundwater underlying citrus croplands, Lake Wales Ridge, central Florida, 1999-2005.

    USGS Publications Warehouse

    Choquette, Anne F.

    2014-01-01

    This report summarizes pesticide and nitrate (as nitrogen) results from quarterly sampling of 31 surficial-aquifer wells in the Lake Wales Ridge Monitoring Network during April 1999 through January 2005. The wells, located adjacent to citrus orchards and used for monitoring only, were generally screened (sampled) within 5 to 40 feet of the water table. Of the 44 citrus pesticides and pesticide degradates analyzed, 17 were detected in groundwater samples. Parent pesticides and degradates detected in quarterly groundwater samples, ordered by frequency of detection, included norflurazon, demethyl norflurazon, simazine, diuron, bromacil, aldicarb sulfone, aldicarb sulfoxide, deisopropylatrazine (DIA), imidacloprid, metalaxyl, thiazopyr monoacid, oxamyl, and aldicarb. Reconnaissance sampling of five Network wells yielded detection of four additional pesticide degradates (hydroxysimazine, didealkylatrazine, deisopropylhydroxyatrazine, and hydroxyatrazine). The highest median concentration values per well, based on samples collected during the 1999–2005 period (n=14 to 24 samples per well), included 3.05 µg/L (micrograms per liter) (simazine), 3.90 µg/L (diuron), 6.30 µg/L (aldicarb sulfone), 6.85 µg/L (aldicarb sulfoxide), 22.0 µg/L (demethyl norflurazon), 25.0 µg/ (norflurazon), 89 µg/ (bromacil), and 25.5 mg/L (milligrams per liter) (nitrate). Nitrate concentrations exceeded the 10 mg/L (as nitrogen) drinking water standard in one or more groundwater samples from 28 of the wells, and the median nitrate concentration among these wells was 14 mg/L. Sampled groundwater pesticide concentrations exceeded Florida’s health-guidance benchmarks for aldicarb sulfoxide and aldicarb sulfone (4 wells), the sum of aldicarb and its degradates (6 wells), simazine (2 wells), the sum of simazine and DIA (3 wells), diuron (2 wells), bromacil (1 well), and the sum of norflurazon and demethyl norflurazon (1 well). The magnitude of fluctuations in groundwater pesticide

  6. Citrus Inventory

    NASA Technical Reports Server (NTRS)

    1994-01-01

    An aerial color infrared (CIR) mapping system developed by Kennedy Space Center enables Florida's Charlotte County to accurately appraise its citrus groves while reducing appraisal costs. The technology was further advanced by development of a dual video system making it possible to simultaneously view images of the same area and detect changes. An image analysis system automatically surveys and photo interprets grove images as well as automatically counts trees and reports totals. The system, which saves both time and money, has potential beyond citrus grove valuation.

  7. Citrus Inventory

    NASA Technical Reports Server (NTRS)

    1986-01-01

    Florida's Charlotte County Property Appraiser is using an aerial color infrared mapping system for inventorying citrus trees for valuation purposes. The ACIR system has significantly reduced the time and manpower required for appraisal. Aerial photographs are taken and interpreted by a video system which makes it possible to detect changes from previous years. Potential problems can be identified. KSC's TU Office has awarded a contract to the Citrus Research and Education Center to adapt a prototype system which would automatically count trees and report totals.

  8. Ground-water resources of coastal Citrus, Hernando, and southwestern Levy counties, Florida

    USGS Publications Warehouse

    Fretwell, J.D.

    1983-01-01

    Ground water in the coastal parts of Citrus, Hernando, and Levy Counties is obtained almost entirely from the Floridan aquifer. The aquifer is unconfined near the coast and semiconfined in the ridge area. Transmissivity ranges from 20,000 feet squared per day in the ridge area to greater than 2,000,000 feet squared per day near major springs. Changes in the potentiometric surface of the aquifer are small between the wet and dry seasons. Water quality within the study area is generally very good except immediately adjacent to the coast where saltwater from the Gulf of Mexico poses a threat to freshwater supply. This threat can be compensated for by placing well fields a sufficient distance away from the zone of transition from saltwater to freshwater so as not to reduce or reverse the hydraulic gradient in that zone. Computer models are presently available to help predict the extent of influence of ground-water withdrawals in an area. These may be used as management tools in planning ground-water development of the area. (USGS)

  9. Transcriptional responses and carbohydrate metabolism of citrus infected with Candidatus Liberibacter asiaticus, the causal agent of Huanglongbing in Florida

    Technology Transfer Automated Retrieval System (TEKTRAN)

    Huanglongbing (HLB) is a devastating disease of citrus occurring in most citrus growing regions worldwide. It is caused by a phloem-limited, fastidious bacterium of the genus Candidatus Liberibacter, which is transmitted through insect vectors. HLB causes the decline of trees within few years afte...

  10. Tidal-flow, circulation, and flushing characteristics of Kings Bay, Citrus County, Florida

    USGS Publications Warehouse

    Hammett, K.M.; Goodwin, C.R.; Sanders, G.L.

    1996-01-01

    Kings Bay is an estuary on the gulf coast of peninsular Florida with a surface area of less than one square mile. It is a unique estuarine system with no significant inflowing rivers or streams. As much as 99 percent of the freshwater entering the bay originates from multiple spring vents at the bottom of the estuary. The circulation and flushing characteristics of Kings Bay were evaluated by applying SIMSYS2D, a two-dimensional numerical model. Field data were used to calibrate and verify the model. Lagrangian particle simulations were used to determine the circulation characteristics for three hydrologic conditions: low inflow, typical inflow, and low inflow with reduced friction from aquatic vegetation. Spring discharge transported the particles from Kings Bay through Crystal River and out of the model domain. Tidal effects added an oscillatory component to the particle paths. The mean particle residence time was 59 hours for low inflow with reduced friction; therefore, particle residence time is affected more by spring discharge than by bottom friction. Circulation patterns were virtually identical for the three simulated hydroloigc conditions. Simulated particles introduced in the southern part of Kings Bay traveled along the eastern side of Buzzard Island before entering Crystal River and existing the model domain. The flushing characteristics of Kings Bay for the three hydrodynamic conditions were determined by simulating the injection of conservative dye constituents. The average concentration of dye initially injected in Kings Bay decreased asymptotically because of spring discharge, and the tide caused some oscillation in the average dye concentration. Ninety-five percent of the injected dye exited Kings Bay and Crystal River with 94 hours for low inflow, 71 hours for typical inflow, and 94 hours for low inflow with reduced bottom friction. Simulation results indicate that all of the open waters of Kings Bay are flushed by the spring discharge. Reduced

  11. Hydrology of the coastal springs ground-water basin and adjacent parts of Pasco, Hernando, and Citrus Counties, Florida

    USGS Publications Warehouse

    Knochenmus, Lari A.; Yobbi, Dann K.

    2001-01-01

    The coastal springs in Pasco, Hernando, and Citrus Counties, Florida consist of three first-order magnitude springs and numerous smaller springs, which are points of substantial ground-water discharge from the Upper Floridan aquifer. Spring flow is proportional to the water-level altitude in the aquifer and is affected primarily by the magnitude and timing of rainfall. Ground-water levels in 206 Upper Floridan aquifer wells, and surface-water stage, flow, and specific conductance of water from springs at 10 gaging stations were measured to define the hydrologic variability (temporally and spatially) in the Coastal Springs Ground-Water Basin and adjacent parts of Pasco, Hernando, and Citrus Counties. Rainfall at 46 stations and ground-water withdrawals for three counties, were used to calculate water budgets, to evaluate long-term changes in hydrologic conditions, and to evaluate relations among the hydrologic components. Predictive equations to estimate daily spring flow were developed for eight gaging stations using regression techniques. Regression techniques included ordinary least squares and multiple linear regression techniques. The predictive equations indicate that ground-water levels in the Upper Floridan aquifer are directly related to spring flow. At tidally affected gaging stations, spring flow is inversely related to spring-pool altitude. The springs have similar seasonal flow patterns throughout the area. Water-budget analysis provided insight into the relative importance of the hydrologic components expected to influence spring flow. Four water budgets were constructed for small ground-water basins that form the Coastal Springs Ground-Water Basin. Rainfall averaged 55 inches per year and was the only source of inflow to the Basin. The pathways for outflow were evapotranspiration (34 inches per year), runoff by spring flow (8 inches per year), ground-water outflow from upward leakage (11 inches per year), and ground-water withdrawal (2 inches per year

  12. Distribution, movement, and fate of nitrate in the surficial aquifer beneath citrus groves, Indian River, Martin, and St Lucie Counties, Florida

    USGS Publications Warehouse

    Crandall, Christy A.

    2000-01-01

    The surficial aquifer system beneath citrus groves in Indian River, Martin, and St. Lucie Counties, Florida, was studied to determine the effects of citrus agriculture on ground-water quality. The surficial aquifer is the primary drinking-water source for Martin and St. Lucie Counties and furnishes about 33 percent of the drinking-water for Indian River County. Water-quality samples and water-level data were collected from December 1996 through October 1998. Nitrate concentrations in ground water exceeded 10 milligrams per liter (mg/L), the U.S. Environmental Protection Agency?s maximum contaminant level for nitrate reported as nitrogen, in 5 percent of the samples from citrus groves. These exceedances occurred in samples from wells with depths of 10 feet or less at citrus groves, and mostly in samples collected during or immediately following fertilizer applications. Samples from wells with depths of 20-25 feet contained little or no nitrate. The decreased nitrate concentrations in ground water with depth was not consistent with chloride and dissolved-solids concentrations, two other common indicators of agricultural activity. Chloride and dissolved-solids concentrations remained elevated in ground-water samples from all depths at citrus groves; median chloride and dissolved-solids concentrations in samples from citrus sites were 125 and 779 mg/L, respectively. In comparison, samples from the reference site had maximum chloride and dissolved-solids concentrations of 61 and 366 mg/L, respectively. Based on the age of ground water at 20-25 foot depths (3-50 years, measured with tritium and helium-3 concentration ratios), nitrate concentrations also should have remained elevated with depth because fertilizers have been used for at least 20-30 years at these citrus groves. Nitrate concentrations decreased with depth as a result of denitrification. This could have occurred because favorable conditions for denitrification existed in the aquifer, including high

  13. BASINS Metadata

    EPA Pesticide Factsheets

    Metadata or data about data describes the content, quality, condition, and other characteristics of data. Geospatial metadata are critical to data discovery and serves as the fuel for the Geospatial One-Stop data portal.

  14. Florida

    Atmospheric Science Data Center

    2014-05-15

    article title:  Florida in Color and Stereo     View Larger ... 9, 2000 during Terra orbit 1650. The image at the top is a color view acquired by the vertical (nadir) camera. It has been reoriented so ... provides a three-dimensional effect when viewed using red/blue glasses with the red filter placed over the left eye. This stereoscopic ...

  15. Development of a qPCR technique to screen for resistance to Asiatic citrus canker

    Technology Transfer Automated Retrieval System (TEKTRAN)

    Asiatic citrus canker (Acc) (causal organism Xanthomonas citri subspc. citri (Xcc) is threatening sustainability of the Florida citrus industry. Resistant cultivars, whether developed through conventional breeding or genetic transformation, will be he best solution for dealint with Acc. In Florida...

  16. Establishment of Lipolexis oregmae (Hymenoptera: Aphidiidae) in a classical biological control program directed against the brown citrus aphid (Homoptera: Aphididae) in Florida

    SciTech Connect

    Persad, A.B.; Hoy, M.A.; Ru Nguyen

    2007-03-15

    The parasitoid Lipolexis oregmae Gahan (introduced as L. scutellaris Mackauer) was imported from Guam, evaluated in quarantine, mass reared, and released into citrus groves in Florida in a classical biological control program directed against the brown citrus aphid, Toxoptera citricida Kirkaldy. Releases of 20,200, 12,100, and 1,260 adults of L. oregmae were made throughout Florida during 2000, 2001, and 2002, respectively. To determine if L. oregmae had successfully established, surveys were conducted throughout the state beginning in the summer of 2001 and continuing through the summer of 2003. Parasitism during 2001 and 2002 was evaluated by holding brown citrus aphids in the laboratory until parasitoid adults emerged. Lipolexis oregmae was found in 10 sites in 7 counties and 4 sites in 3 counties with parasitism rates ranging from 0.7 to 3.3% in 2001 and 2002, respectively. Laboratory tests indicated that high rates of mortality occurred if field-collected parasitized aphids were held in plastic bags, so a molecular assay was used that allowed immature L. oregmae to be detected within aphid hosts immediately after collection. The molecular assay was used in 2003 with the brown citrus aphids and with other aphid species collected from citrus, weeds, and vegetables near former release sites; immatures of L. oregmae were detected in black citrus aphids, cowpea aphids, spirea aphids, and melon aphids, as well as in the brown citrus aphid, in 4 of 8 counties sampled, with parasitism ranging from 2.0 to 12.9%, indicating that L. oregmae is established and widely distributed. Samples taken in Polk County during Oct 2005 indicated that L. oregmae has persisted. The ability of L. oregmae to parasitize other aphid species on citrus, and aphids on other host plants, enhances the ability of L. oregmae to persist when brown citrus aphid populations are low. (author) [Spanish] El parasitoide Lipolexis oregmae Gahan (introducido como L. scutellaris Mackauer) fue importado de

  17. Preharvest measures for postharvest improvement in marketable fresh citrus

    Technology Transfer Automated Retrieval System (TEKTRAN)

    Citrus canker, caused by the bacterium Xanthomonas citri supsp. citri, (Xcc),was once the scourge of the Florida citrus industry from the early 1900’s on and off until the early 1990’s. It has been replaced, for the most part, by citrus greening but still continues to be a problem for Florida fres...

  18. Preharvest measures for postharvest improvement in marketable fresh citrus

    Technology Transfer Automated Retrieval System (TEKTRAN)

    Citrus canker caused by the bacterium Xanthomonas citri supsp. citri, (Xcc), was once the scourge of the Florida citrus industry from the early 1900’s on and off until the early 1990’s. It has been replaced, for the most part, by citrus greening but still continues to be a problem for Florida fresh ...

  19. Comparison of different detection methods for citrus greening disease based on airborne multispectral and hyperspectral imagery

    Technology Transfer Automated Retrieval System (TEKTRAN)

    Citrus greening or Huanglongbing (HLB) is a devastating disease spread in many citrus groves since first found in 2005 in Florida. Multispectral (MS) and hyperspectral (HS) airborne images of citrus groves in Florida were taken to detect citrus greening infected trees in 2007 and 2010. Ground truthi...

  20. Spectral difference analysis and airborne imaging classification for citrus greening infected trees

    Technology Transfer Automated Retrieval System (TEKTRAN)

    Citrus greening, also called Huanglongbing (HLB), became a devastating disease spread through citrus groves in Florida, since it was first found in 2005. Multispectral (MS) and hyperspectral (HS) airborne images of citrus groves in Florida were acquired to detect citrus greening infected trees in 20...

  1. Attraction of a native Florida leafminer, Phyllocnistis insignis, to pheromone of an invasive citrus Leafminer, P. citrella.

    Technology Transfer Automated Retrieval System (TEKTRAN)

    We collected a native North American species, Phyllocnistis insignis (Frey & Boll) (Lepidoptera: Gracillariidae), in traps baited with a 3:1 blend of (Z,Z,E)-7,11,13-hexadecatrienal (triene) and (Z,Z)-7,11-hexadecadienal (diene), 2 components of the sex pheromone of the invasive citrus leafminer, P....

  2. Non-phytoseiid Mesostigmata within citrus orchards in Florida: species distribution, relative and seasonal abundance within trees, associated vines and ground cover plants and additional collection records of mites in citrus orchards.

    PubMed

    Childers, Carl C; Ueckermann, Eduard A

    2015-03-01

    Seven citrus orchards on reduced- to no-pesticide spray programs in central and south central Florida were sampled for non-phytoseiid mesostigmatid mites. Inner and outer canopy leaves, fruits, twigs and trunk scrapings were sampled monthly between August 1994 and January 1996. Open flowers were sampled in March from five of the sites. A total of 431 samples from one or more of 82 vine or ground cover plants were sampled monthly in five of the seven orchards. Two of the seven orchards (Mixon I and II) were on full herbicide programs and vines and ground cover plants were absent. A total of 2,655 mites (26 species) within the families: Ascidae, Blattisociidae, Laelapidae, Macrochelidae, Melicharidae, Pachylaelapidae and Parasitidae were identified. A total of 685 mites in the genus Asca (nine species: family Ascidae) were collected from within tree samples, 79 from vine or ground cover plants. Six species of Blattisociidae were collected: Aceodromus convolvuli, Blattisocius dentriticus, B. keegani, Cheiroseius sp. near jamaicensis, Lasioseius athiashenriotae and L. dentatus. A total of 485 Blattisociidae were collected from within tree samples compared with 167 from vine or ground cover plants. Low numbers of Laelapidae and Macrochelidae were collected from within tree samples. One Zygoseius furciger (Pachylaelapidae) was collected from Eleusine indica. Four species of Melicharidae were identified from 34 mites collected from within tree samples and 1,190 from vine or ground cover plants: Proctolaelaps lobatus was the most abundant species with 1,177 specimens collected from seven ground cover plants. One Phorytocarpais fimetorum (Parasitidae) was collected from inner leaves and four from twigs. Species of Ascidae, Blattisociidae, Melicharidae, Laelapidae and Pachylaelapidae were collected from 31 of the 82 vine or ground cover plants sampled, representing only a small fraction of the total number of Phytoseiidae collected from the same plants. Including the

  3. Application of natural colorants on citrus fruit as alternatives to Citrus Red II

    Technology Transfer Automated Retrieval System (TEKTRAN)

    Warm field temperatures can often result in poor peel color of some citrus varieties, especially early in the harvest season. Under these conditions, Florida oranges, temples, tangelos, and K-Early citrus fruit are allowed to be treated with Citrus Red No.2 (CR2) to help produce a more acceptable pe...

  4. Biological control of Asian citrus psyllid (Diaphorina citri) in Florida by the parasitoid Tamarixia radiata in urban plantings of orange jasmine

    Technology Transfer Automated Retrieval System (TEKTRAN)

    The Asian citrus psyllid is an important invasive citrus pest in the United States because it vectors a bacterium responsible for a devastating disease of citrus known as huanglongbing. A parasitoid of the psyllid, Tamarixia radiata (Hymenoptera: Eulophidae), was imported from Southeast Asia and re...

  5. Bionomics of Asian citrus psyllid associated with orange jasmine hedges in Florida, with special reference to biological control by Tamarixia radiata

    Technology Transfer Automated Retrieval System (TEKTRAN)

    The Asian citrus psyllid (ACP) is an important invasive citrus pest because it vectors a bacterium responsible for a devastating disease of citrus known as huanglongbing. Orange jasmine (Murraya paniculata) is a favored alternate ACP host plant and is widely grown as an ornamental plant in urban ar...

  6. Asian citrus psyllid, huanglongbing and the orange jasmine conundrum

    Technology Transfer Automated Retrieval System (TEKTRAN)

    The Asian citrus psyllid (ACP) is an important invasive pest in Florida because it vectors a bacterium ‘Ca. Liberibacter asiaticus’ (LAS) responsible for a devastating citrus disease known as huanglongbing (HLB). Soon after finding HLB in Florida, concerns arose that orange jasmine in urban areas wo...

  7. Citrus production systems to survive greening – horticultural practices

    Technology Transfer Automated Retrieval System (TEKTRAN)

    Fruit yield is a critical component in the long-term profitability of citrus growers in Florida. Increasingly, two factors outside the control of the growers are forcing Florida citrus growers to re-evaluate the sustainability of their current operations. These factors are: 1) impact of canker and ...

  8. Susceptibility of sixteen citrus genotypes to Candidatus Liberibacter asiaticus

    Technology Transfer Automated Retrieval System (TEKTRAN)

    Huanglongbing (HLB) disease is the most serious threat to citrus production worldwide and in the last decade has devastated the Florida citrus industry. HLB is associated with a phloem-limited a-proteobacter Candidatus Liberibacter asiaticus (CLas) and its insect vector the Asian citrus psyllid (Dia...

  9. Evaluation of natural colorants and their application on citrus fruit

    Technology Transfer Automated Retrieval System (TEKTRAN)

    Warm temperatures can often result in poor peel color of some citrus varieties, especially early in the harvest season. Under these conditions, Florida oranges, temples, tangelos, and K-Early citrus fruit are allowed to be treated with Citrus Red No.2 (CR2) to help produce a more acceptable peel col...

  10. Evaluation of natural colorants and their application on citrus fruit as alternatives to Citrus Red No. 2

    Technology Transfer Automated Retrieval System (TEKTRAN)

    Warm field temperatures can often result in poor peel color of some citrus varieties, especially early in the harvest season. Under these conditions, Florida oranges, temples, tangelos, and K-Early citrus fruit are allowed to be treated with Citrus Red No.2 (CR2) to help produce a more acceptable pe...

  11. Screening Citrus germplasm for tolerance to HLB and Diaphorina citri--progress

    Technology Transfer Automated Retrieval System (TEKTRAN)

    This article summarizes a project that is being funded in part by the California Citrus Research Board. In a previous field trial, 87 genotypes of citrus were planted in the field in Florida and the different genotypes were evaluated for tolerance to Asian citrus psyllid, citrus leaf miner, and hua...

  12. Continuous process for enhanced release and recovery of pectic hydrocolloids and phenolics from citrus biomass

    Technology Transfer Automated Retrieval System (TEKTRAN)

    During the 2012/2013 harvesting season the Florida citrus processing industry produced 0.55 × 106 metric tons (MT) of dried citrus pellets from citrus processing waste (CPW). The citrus pellets were marketed as a low value animal feed which may sell for $0.22 per kg or less. This biomass also contai...

  13. Geochemical and isotopic composition of ground water with emphasis on sources of sulfate in the upper Floridan Aquifer in parts of Marion, Sumter, and Citrus counties, Florida

    USGS Publications Warehouse

    Sacks, Laura A.

    1996-01-01

    In inland areas of northwest central Florida, sulfate concentrations in the Upper Floridan aquifer are extremely variable and sometimes exceed drinking water standards (250 milligrams per liter). This is unusual because the aquifer is unconfined and near the surface, allowing for active recharge. The sources of sulfate and geochemical processes controlling ground-water composition were evaluated in this area. Water was sampled from thirty-three wells in parts of Marion, Sumter, and Citrus Counties, within the Southwest Florida Water Management District; these included at least a shallow and a deep well at fifteen separate locations. Ground water was analyzed for major ions, selected trace constituents, dissolved organic carbon, and stable isotopes (sulfur-34 of sulfate and sulfide, carbon-13 of inorganic carbon, deuterium, and oxygen-18). Sulfate concentrations ranged from less than 0.2 to 1,400 milligrams per liter, with higher sulfate concentrations usually in water from deeper wells. The samples can be categorized into a low sulfate group (less than 30 milligrams per liter) and a high sulfate group (greater than 30 milligrams per liter). For the high sulfate water, concentrations of calcium and magnesium increased concurrently with sulfate. Chemical and isotopic data and mass-balance modeling indicate that the composition of high sulfate waters is controlled by dedolomitization reactions (dolomite dissolution and calcite precipitation, driven by dissolution of gypsum). Gypsum occurs deeper in the aquifer than open intervals of sampled wells. Upward flow has been documented in deeper parts of the aquifer in the study area, which may be driven by localized discharge areas or rapid flow in shallow parts of the aquifer. Mixing between shallow ground water and sulfate-rich water that dissolved gypsum at the base of the aquifer is probably responsible for the range of concentrations observed in the study area. Other solutes that increased with sulfate apparently

  14. CMR Metadata Curation

    NASA Technical Reports Server (NTRS)

    Shum, Dana; Bugbee, Kaylin

    2017-01-01

    This talk explains the ongoing metadata curation activities in the Common Metadata Repository. It explores tools that exist today which are useful for building quality metadata and also opens up the floor for discussions on other potentially useful tools.

  15. Evaluation of natural colorants and their application on citrus fruit as alternatives to citrus red II

    Technology Transfer Automated Retrieval System (TEKTRAN)

    The poor peel color of some varieties of oranges and the hybrids, especially for early season fruits, is caused by the subtropical climate of Florida, and has resulted in the use of a red dye on the peel to improve fruit appearance and marketability. Citrus Red II (CR2), the commercial citrus color ...

  16. Citrus County Schools Copyright Guidelines Recommended by the Citrus County Association of School Media Specialists.

    ERIC Educational Resources Information Center

    Citrus County School District, Inverness, FL.

    This document contains copyright guidelines determined appropriate for the Citrus County School System (Florida) by the Citrus County Association of School Media Specialists in May, 1992. These guidelines are based on interpretation and understanding of current copyright law as applied to education and implemented in school districts in the United…

  17. Apparent tolerance to huanglongbing in citrus and citrus-related germplasm

    Technology Transfer Automated Retrieval System (TEKTRAN)

    In a Ft. Pierce, Florida field planting, growth and huanglongbing (HLB) severity were assessed as indicators of HLB-tolerance on progenies of 83 seed-source accessions of citrus and citrus-relatives from the Riverside, California genebank. The HLB-pathogen (Candidatus Liberibacter asiaticus) and vec...

  18. Mining the Metadata Quarries.

    ERIC Educational Resources Information Center

    Sutton, Stuart A., Ed.; Guenther, Rebecca; McCallum, Sally; Greenberg, Jane; Tennis, Joseph T.; Jun, Wang

    2003-01-01

    This special section of the "Bulletin" includes an introduction and the following articles: "New Metadata Standards for Digital Resources: MODS (Metadata Object and Description Schema) and METS (Metadata Encoding and Transmission Standard)"; "Metadata Generation: Processes, People and Tools"; "Data Collection for…

  19. Processess involved in the dispersal of Xanthomonas citri pv. citri from canker-infected citrus canopies, and in the infection of citrus foliage

    Technology Transfer Automated Retrieval System (TEKTRAN)

    Citrus canker (Xanthomonas citri subsp. citri, Xcc) is now considered endemic in Florida, and epidemics result in yield loss and market penalties both in Florida and elsewhere, where the pathogen occurs and susceptible citrus is cultivated. The bacterium is dispersed in rain splash, and storms with...

  20. Processes involved in the dispersal of Xanthomonas citri pv. citri from canker-infectd citrus canopies, and in the infection of citrus foliage

    Technology Transfer Automated Retrieval System (TEKTRAN)

    Citrus canker (Xanthomonas citri subsp. citri, Xcc) is now considered endemic in Florida, and epidemics result in yield loss and market penalties both in Florida, and elsewhere where the pathogen occurs, and susceptible citrus is cultivated. The bacterium is dispersed in rain splash, and storms wit...

  1. Attraction of a native Florida leafminer, Phyllocnistis insignis (Lepidoptera: Gracillariidae), to pheromone of invasive citrus leafminer, P. citrella: Evidence for mating disruption of a native nontarget species

    Technology Transfer Automated Retrieval System (TEKTRAN)

    We collected a native North American species, Phyllocnistis insignis (Frey & Boll), in traps baited with a 3:1 blend of (Z,Z,E)-7,11,13-hexadecatrienal (triene) and (Z,Z)-7,11-hexadecadienal (diene), two components of the sex pheromone of the exotic citrus leafminer, Phyllocnistis citrella Stainton....

  2. 7 CFR 905.149 - Procedure for permitting growers to ship tree run citrus fruit.

    Code of Federal Regulations, 2011 CFR

    2011-01-01

    ... 7 Agriculture 8 2011-01-01 2011-01-01 false Procedure for permitting growers to ship tree run... Fruit § 905.149 Procedure for permitting growers to ship tree run citrus fruit. (a) Tree run citrus fruit. Tree run citrus fruit as referenced in this section is defined in the Florida Department...

  3. Predisposition of citrus foliage to infection with Xanthomonas citri subsp. citri

    Technology Transfer Automated Retrieval System (TEKTRAN)

    Citrus canker (caused by Xanthomonas citri subsp. citri, Xcc) is a serious disease of susceptible citrus in Florida and other citrus-growing areas of the world. The effect of leaf preconditioning as a route for entry of the bacteria is poorly characterized. A series of experiments were designed to i...

  4. Wind speed and wind-associated leaf injury affect severity of citrus canker on Swingle citrumelo

    Technology Transfer Automated Retrieval System (TEKTRAN)

    Citrus canker (caused by the bacterial pathogen Xanthomonas citri subsp. citri, Xcc) can cause severe damage to citrus. It is endemic in Florida, and occurs in other citrus growing regions. The bacterium is dispersed predominantly in rain splash. To simulate dispersal in splash, and to investigate t...

  5. 7 CFR 905.149 - Procedure for permitting growers to ship tree run citrus fruit.

    Code of Federal Regulations, 2010 CFR

    2010-01-01

    ... Fruit § 905.149 Procedure for permitting growers to ship tree run citrus fruit. (a) Tree run citrus fruit. Tree run citrus fruit as referenced in this section is defined in the Florida Department of... grower shall apply to ship tree run fruit using a Grower Tree Run Certificate Application, furnished...

  6. Bacterial brown leaf spot of citrus, a new disease caused by Burkholderia andropogonis

    Technology Transfer Automated Retrieval System (TEKTRAN)

    A new bacterial disease of citrus was recently identified in Florida and named as bacterial brown leaf spot (BBLS) of citrus. BBLS-infected citrus displayed flat, circular and brownish lesions with water-soaked margins surrounded by a chlorotic halo on leaves. Based on Biolog carbon source metabolic...

  7. Detection of Citrus Huanglongbing by Fourier Transform Infrared-Attenuated Total Reflection (FTIR-ATR) Spectroscopy

    Technology Transfer Automated Retrieval System (TEKTRAN)

    Citrus Huanglongbing (HLB, also known as citrus greening disease) was discovered in Florida in 2005 and is spreading rapidly amongst the citrus growing regions of the state. Detection via visual symptoms of the disease is not a long term viable option. New techniques are being developed to test fo...

  8. Huanglongbing: An Overview of a Complex Pathosystem Ravaging the World's Citrus

    Technology Transfer Automated Retrieval System (TEKTRAN)

    Citrus huanglongbing (HLB) has become a major disease and limiting factor of production in the citrus areas which have become infected. The disease was first reported in the Western Hemisphere in 2004 with devastating effects in major citrus producing areas such as Brazil and Florida. The destructi...

  9. 7 CFR 905.149 - Procedure for permitting growers to ship tree run citrus fruit.

    Code of Federal Regulations, 2014 CFR

    2014-01-01

    ... 7 Agriculture 8 2014-01-01 2014-01-01 false Procedure for permitting growers to ship tree run... Fruit § 905.149 Procedure for permitting growers to ship tree run citrus fruit. (a) Tree run citrus fruit. Tree run citrus fruit as referenced in this section is defined in the Florida Department...

  10. 7 CFR 905.149 - Procedure for permitting growers to ship tree run citrus fruit.

    Code of Federal Regulations, 2013 CFR

    2013-01-01

    ... 7 Agriculture 8 2013-01-01 2013-01-01 false Procedure for permitting growers to ship tree run... Fruit § 905.149 Procedure for permitting growers to ship tree run citrus fruit. (a) Tree run citrus fruit. Tree run citrus fruit as referenced in this section is defined in the Florida Department...

  11. 7 CFR 905.149 - Procedure for permitting growers to ship tree run citrus fruit.

    Code of Federal Regulations, 2012 CFR

    2012-01-01

    ... 7 Agriculture 8 2012-01-01 2012-01-01 false Procedure for permitting growers to ship tree run... Fruit § 905.149 Procedure for permitting growers to ship tree run citrus fruit. (a) Tree run citrus fruit. Tree run citrus fruit as referenced in this section is defined in the Florida Department...

  12. Citrus Genomics

    PubMed Central

    Talon, Manuel; Gmitter Jr., Fred G.

    2008-01-01

    Citrus is one of the most widespread fruit crops globally, with great economic and health value. It is among the most difficult plants to improve through traditional breeding approaches. Currently, there is risk of devastation by diseases threatening to limit production and future availability to the human population. As technologies rapidly advance in genomic science, they are quickly adapted to address the biological challenges of the citrus plant system and the world's industries. The historical developments of linkage mapping, markers and breeding, EST projects, physical mapping, an international citrus genome sequencing project, and critical functional analysis are described. Despite the challenges of working with citrus, there has been substantial progress. Citrus researchers engaged in international collaborations provide optimism about future productivity and contributions to the benefit of citrus industries worldwide and to the human population who can rely on future widespread availability of this health-promoting and aesthetically pleasing fruit crop. PMID:18509486

  13. Predicting structured metadata from unstructured metadata

    PubMed Central

    Posch, Lisa; Panahiazar, Maryam; Dumontier, Michel; Gevaert, Olivier

    2016-01-01

    Enormous amounts of biomedical data have been and are being produced by investigators all over the world. However, one crucial and limiting factor in data reuse is accurate, structured and complete description of the data or data about the data—defined as metadata. We propose a framework to predict structured metadata terms from unstructured metadata for improving quality and quantity of metadata, using the Gene Expression Omnibus (GEO) microarray database. Our framework consists of classifiers trained using term frequency-inverse document frequency (TF-IDF) features and a second approach based on topics modeled using a Latent Dirichlet Allocation model (LDA) to reduce the dimensionality of the unstructured data. Our results on the GEO database show that structured metadata terms can be the most accurately predicted using the TF-IDF approach followed by LDA both outperforming the majority vote baseline. While some accuracy is lost by the dimensionality reduction of LDA, the difference is small for elements with few possible values, and there is a large improvement over the majority classifier baseline. Overall this is a promising approach for metadata prediction that is likely to be applicable to other datasets and has implications for researchers interested in biomedical metadata curation and metadata prediction. Database URL: http://www.yeastgenome.org/

  14. Visualization of Metadata.

    ERIC Educational Resources Information Center

    Beagle, Donald

    1999-01-01

    Discusses the potential for visualization of metadata and metadata-based surrogates, including a command interface for metadata viewing, site mapping and data aggregation tools, dynamic derivation of surrogates, and a reintroduction of transient hypergraphs from the tradition of cocitation networking. Addresses digital library research into…

  15. What's the latest on USDA citrus scion breeding?

    Technology Transfer Automated Retrieval System (TEKTRAN)

    In its 120 year history, the USDA citrus scion breeding program has provided the mainstays of the Florida specialty citrus industry. In the last few years, the USDA has released US Early Pride mandarin, US Seedless Pineapple sweet orange and most recently, US Furr/US Furr-ST mandarin. Clearly huangl...

  16. Tolerance of trifoliate citrus rootstock hybrids to Candidatus Liberibacter asiaticus

    Technology Transfer Automated Retrieval System (TEKTRAN)

    Candidatus Liberibacter asiaticus (Las) is the suspected causal agent of Huanglongbing (HLB) in Florida and other citrus producing countries around the world. Although little resistance to HLB is found within commercial citrus varieties, tolerance has been reported for some varieties that are common...

  17. Metadata for Web Resources: How Metadata Works on the Web.

    ERIC Educational Resources Information Center

    Dillon, Martin

    This paper discusses bibliographic control of knowledge resources on the World Wide Web. The first section sets the context of the inquiry. The second section covers the following topics related to metadata: (1) definitions of metadata, including metadata as tags and as descriptors; (2) metadata on the Web, including general metadata systems,…

  18. Genome Similarity Implies that Citrus-Parasitic Burrowing Nematodes do not Represent a Unique Species.

    PubMed

    Kaplan, D T; Opperman, C H

    1997-12-01

    Burrowing nematodes from Central America, Dominican Republic, Florida, Guadeloupe, Hawaii, and Puerto Rico were characterized for their ability to parasitize citrus, but citrus parasites were found only in Florida. Sequence tag sites originally amplified from a citrus-parasitic burrowing nematode were polymorphic among 37 burrowing nematode isolates and were not correlated with citrus parasitism, nematode isolate collection site, or amplification of a 2.4-kb sequence tag site (DK#1). Results of a RAPD analysis and characterization of the isozymes phosphoglucose isomerase, lactate dehydrogenase, and malate dehydrogenase indicated that the burrowing nematode isolates were highly similar. Citrus parasitism in Florida appears to be associated with limited changes in the burrowing nematode genome. Findings did not substantiate a previous report that R. citrophilus was present in Hawaii. Overall, these data do not support assignment of sibling species status to burrowing nematodes that differ with respect to citrus parasitism.

  19. Influence of rootstock variety on huanglongbing disease development in field-grown sweet orange (Citrus sinensis L.) osbeck trees

    Technology Transfer Automated Retrieval System (TEKTRAN)

    Huanglongbing (HLB), a bacterial disease of citrus, is causing substantial economic losses to the citrus industry worldwide. Sweet oranges are highly susceptible to the disease, and account for nearly 90% of all varieties grown in Florida. Rootstock is an important component of commercial citrus p...

  20. USGIN ISO metadata profile

    NASA Astrophysics Data System (ADS)

    Richard, S. M.

    2011-12-01

    The USGIN project has drafted and is using a specification for use of ISO 19115/19/39 metadata, recommendations for simple metadata content, and a proposal for a URI scheme to identify resources using resolvable http URI's(see http://lab.usgin.org/usgin-profiles). The principal target use case is a catalog in which resources can be registered and described by data providers for discovery by users. We are currently using the ESRI Geoportal (Open Source), with configuration files for the USGIN profile. The metadata offered by the catalog must provide sufficient content to guide search engines to locate requested resources, to describe the resource content, provenance, and quality so users can determine if the resource will serve for intended usage, and finally to enable human users and sofware clients to obtain or access the resource. In order to achieve an operational federated catalog system, provisions in the ISO specification must be restricted and usage clarified to reduce the heterogeneity of 'standard' metadata and service implementations such that a single client can search against different catalogs, and the metadata returned by catalogs can be parsed reliably to locate required information. Usage of the complex ISO 19139 XML schema allows for a great deal of structured metadata content, but the heterogenity in approaches to content encoding has hampered development of sophisticated client software that can take advantage of the rich metadata; the lack of such clients in turn reduces motivation for metadata producers to produce content-rich metadata. If the only significant use of the detailed, structured metadata is to format into text for people to read, then the detailed information could be put in free text elements and be just as useful. In order for complex metadata encoding and content to be useful, there must be clear and unambiguous conventions on the encoding that are utilized by the community that wishes to take advantage of advanced metadata

  1. Incidence of huanglongbing-associated ‘Candidatus Liberibacter Asiaticus’ in Diaphorina citri (Hemiptera: Psyllidae) collected from plants for sale in Florida

    Technology Transfer Automated Retrieval System (TEKTRAN)

    The Asian citrus psyllid, Diaphorina citri Kuwayama, was reported for the first time in Florida in June 1998, and huanglongbing (HLB, citrus greening), vectored by D. citri, was detected in Florida for the first time in Aug 2005. In Florida, the only known HLB pathogen is ‘Candidatus Liberibacter as...

  2. Metadata requirements for portals.

    PubMed

    Benson, Tim

    2015-01-01

    Consensus around the requirements for metadata in patient and clinical portals would provide a sound basis for the adoption of standards. We propose a set of requirements for metadata in a way that is generic and platform independent. These requirements cover both Clinical Documents and Clinical Statements, addressing the what, who, when and where of each item.

  3. Descriptive Metadata: Emerging Standards.

    ERIC Educational Resources Information Center

    Ahronheim, Judith R.

    1998-01-01

    Discusses metadata, digital resources, cross-disciplinary activity, and standards. Highlights include Standard Generalized Markup Language (SGML); Extensible Markup Language (XML); Dublin Core; Resource Description Framework (RDF); Text Encoding Initiative (TEI); Encoded Archival Description (EAD); art and cultural-heritage metadata initiatives;…

  4. Visualization of JPEG Metadata

    NASA Astrophysics Data System (ADS)

    Malik Mohamad, Kamaruddin; Deris, Mustafa Mat

    There are a lot of information embedded in JPEG image than just graphics. Visualization of its metadata would benefit digital forensic investigator to view embedded data including corrupted image where no graphics can be displayed in order to assist in evidence collection for cases such as child pornography or steganography. There are already available tools such as metadata readers, editors and extraction tools but mostly focusing on visualizing attribute information of JPEG Exif. However, none have been done to visualize metadata by consolidating markers summary, header structure, Huffman table and quantization table in a single program. In this paper, metadata visualization is done by developing a program that able to summarize all existing markers, header structure, Huffman table and quantization table in JPEG. The result shows that visualization of metadata helps viewing the hidden information within JPEG more easily.

  5. No More Metadata!

    NASA Astrophysics Data System (ADS)

    Baumann, Peter

    2014-05-01

    For well-known technologically motivated reasons, communities have developed the distinction between data and metadata. Mainly this was because data were too big to analyze, and often too complex as well. Therefore, metadata were established as a kind of summaries which allow browsing and search, albeit only on the criteria preselected by the metadata provider. The result is that metadata are considered smart, queryable, and agile whereas the underlying data typically are seen as big, difficult to understand and interpret, unavailable for analysis. Common sense has it that in general data should be touched upon only once a meaningful focusing and downsizing of the topical dataset has been achieved through elaborate metadata retrieval. With the advent of Big Data technology we are in a position ot overcome this age-old digital divide. Utilizing NewSQL concepts, query techniques go beyond the classical set paradigm and can also handle large graphs and arrays. Access and retrieval can be accomplished on a high semantic level. In our presentation we show, on the example of array data, how the data/metadata divide can be effectively eliminated today. We will do so by showing queries combining metadata and ground-truth data retrieval will be shown for SQL and XQuery.

  6. Citrus Grove Mapping

    NASA Technical Reports Server (NTRS)

    1980-01-01

    Citrus growers have long used aerial photography to inventory the number of groves in production. A new development at Kennedy Space Center, aerial mapping of groves with color infrared (CIR) film, affords an important advance in grove management by detecting and locating unhealthy trees long before they could be detected by ground survey methods. Aerial CIR photography picks up light reflected from foliage-- light not visible to the human eye--and enables differentiation between healthy and "stressed" (diseased) trees of a Florida orange/grapefruit grove. Computer aided photo interpretation techniques permit grading diseased trees lightly, moderately or severely stressed or dead. Method of grove mapping has offered advantage to growers in early disease warning, possible savings through water regulation and provision of a permanent record of grove growth patterns.

  7. Probing behaviors of adult Asian citrus psyllid (Hemiptera: Psyllidae)are not appreciably affected by soil application of field-rate aldicarb to citrus

    Technology Transfer Automated Retrieval System (TEKTRAN)

    In 2005, Huanglongbing disease (HLB), also known as citrus greening, was discovered in Florida. The presumptive causal agent of this disease is the phloem-limited bacterium Candidatus Liberibacter asiaticus (Las), which is transmitted by the Asian citrus psyllid,Diaphorina citri Kuwayama. Following ...

  8. ATLAS Metadata Task Force

    SciTech Connect

    ATLAS Collaboration; Costanzo, D.; Cranshaw, J.; Gadomski, S.; Jezequel, S.; Klimentov, A.; Lehmann Miotto, G.; Malon, D.; Mornacchi, G.; Nemethy, P.; Pauly, T.; von der Schmitt, H.; Barberis, D.; Gianotti, F.; Hinchliffe, I.; Mapelli, L.; Quarrie, D.; Stapnes, S.

    2007-04-04

    This document provides an overview of the metadata, which are needed to characterizeATLAS event data at different levels (a complete run, data streams within a run, luminosity blocks within a run, individual events).

  9. Metadata, PICS and Quality.

    ERIC Educational Resources Information Center

    Armstrong, C. J.

    1997-01-01

    Discusses PICS (Platform for Internet Content Selection), the Centre for Information Quality Management (CIQM), and metadata. Highlights include filtering networked information; the quality of information; and standardizing search engines. (LRW)

  10. The RBV metadata catalog

    NASA Astrophysics Data System (ADS)

    André, François; Brissebrat, Guillaume; Fleury, Laurence; Gaillardet, Jérôme; Nord, Guillaume

    2014-05-01

    RBV (Réseau des Bassins Versants) is an initiative to consolidate the national efforts made by more than 15 elementary observatories belonging to various French research institutions (CNRS, Universities, INRA, IRSTEA, IRD) that study river and drainage basins. RBV is a part of a global initiative to create a network of observatories for investigating Earth's surface processes. The RBV Metadata Catalogue aims to give an unified vision of the work produced by every observatory to both the members of the RBV network and any external person involved in this domain of research. Another goal is to share this information with other catalogues through the compliance with the ISO19115 standard and the INSPIRE directive and the ability of being harvested (globally or partially). Metadata management is heterogeneous among observatories. The catalogue is designed to face this situation with the following main features: -Multiple input methods: Metadata records in the catalog can either be entered with the graphical user interface, harvested from an existing catalogue or imported from information system through simplified web services. -Three hierachical levels: Metadata records may describe either an observatory in general, one of its experimental site or a dataset produced by instruments. -Multilingualism: Metadata can be entered in several configurable languages. The catalogue provides many other feature such as search and browse mechanisms to find or discover records. The RBV metadata catalogue associates a CSW metadata server (Geosource) and a JEE application. The CSW server is in charge of the persistence of the metadata while the JEE application both wraps CSW calls and define the user interface. The latter is built with the GWT Framework to offer a rich client application with a fully ajaxified navigation. The catalogue is accessible at the following address: http://portailrbv.sedoo.fr/ Next steps will target the following points: -Description of sensors in accordance

  11. The RBV metadata catalog

    NASA Astrophysics Data System (ADS)

    Andre, Francois; Fleury, Laurence; Gaillardet, Jerome; Nord, Guillaume

    2015-04-01

    RBV (Réseau des Bassins Versants) is a French initiative to consolidate the national efforts made by more than 15 elementary observatories funded by various research institutions (CNRS, INRA, IRD, IRSTEA, Universities) that study river and drainage basins. The RBV Metadata Catalogue aims at giving an unified vision of the work produced by every observatory to both the members of the RBV network and any external person interested by this domain of research. Another goal is to share this information with other existing metadata portals. Metadata management is heterogeneous among observatories ranging from absence to mature harvestable catalogues. Here, we would like to explain the strategy used to design a state of the art catalogue facing this situation. Main features are as follows : - Multiple input methods: Metadata records in the catalog can either be entered with the graphical user interface, harvested from an existing catalogue or imported from information system through simplified web services. - Hierarchical levels: Metadata records may describe either an observatory, one of its experimental site or a single dataset produced by one instrument. - Multilingualism: Metadata can be easily entered in several configurable languages. - Compliance to standards : the backoffice part of the catalogue is based on a CSW metadata server (Geosource) which ensures ISO19115 compatibility and the ability of being harvested (globally or partially). On going tasks focus on the use of SKOS thesaurus and SensorML description of the sensors. - Ergonomy : The user interface is built with the GWT Framework to offer a rich client application with a fully ajaxified navigation. - Source code sharing : The work has led to the development of reusable components which can be used to quickly create new metadata forms in other GWT applications You can visit the catalogue (http://portailrbv.sedoo.fr/) or contact us by email rbv@sedoo.fr.

  12. Entomopathogenic nematodes, phoretic Paenibacillus spp., and the use of real time quantitative PCR to explore soil food webs in Florida citrus groves.

    PubMed

    Campos-Herrera, Raquel; El-Borai, Fahiem E; Stuart, Robin J; Graham, James H; Duncan, Larry W

    2011-09-01

    Quantitative real-time PCR (qPCR) is a powerful tool to detect and quantify species of cryptic organisms such as bacteria, fungi and nematodes from soil samples. As such, qPCR offers new opportunities to study the ecology of soil habitats by providing a single method to characterize communities of diverse organisms from a sample of DNA. Here we describe molecular tools to detect and quantify two bacteria (Paenibacillus nematophilus and Paenibacillus sp.) phoretically associated with entomopathogenic nematodes (EPNs) in the families Heterorhabditidae and Steinernematodae. We also extend the repertoire of species specific primers and TaqMan® probes for EPNs to include Heterorhabditis bacteriophora, Steinernema carpocapsae, Steinernema feltiae and Steinernema scapterisci, all widely distributed species used commercially for biological control. Primers and probes were designed from the ITS rDNA region for the EPNs and the 16S rDNA region for the bacteria. Standard curves were established using DNA from pure cultures of EPNs and plasmid DNA from the bacteria. The use of TaqMan probes in qPCR resolved the non-specificity of EPN and some bacterial primer amplifications whereas those for Paenibacillus sp. also amplified Paenibacillus thiaminolyticus and Paenibacillus popilliae, two species that are not phoretically associated with nematodes. The primer-probe sets for EPNs were able to accurately detect three infective juvenile EPNs added to nematodes recovered from soil samples. The molecular set for Paenibacillus sp. detected the bacterium attached to Steinernema diaprepesi suspended in water or added to nematodes recovered from soil samples but its detection decreased markedly in the soil samples, even when a nested PCR protocol was employed. Using qPCR we detected S. scapterisci at low levels in a citrus grove, which suggested natural long-distance spread of this exotic species, which is applied to pastures and golf courses to manage mole crickets (Scapteriscus spp

  13. Comparison of evapotranspiration rates for flatwoods and ridge citrus

    USGS Publications Warehouse

    Jia, X.; Swancar, A.; Jacobs, J.M.; Dukes, M.D.; Morgan, K.

    2007-01-01

    Florida citrus groves are typically grown in two regions of the state: flatwoods and ridge. The southern flatwoods citrus area has poorly drained fine textured sands with low organic matter in the shallow root zone. Ridge citrus is located in the northern ridge citrus zone and has fine to coarse textured sands with low water-holding capacity. Two commercial citrus groves, selected from each region, were studied from 15 July 2004 to 14 July 2005. The flatwoods citrus (FC) grove had a grass cover and used drainage ditches to remove excess water from the root zone. The ridge citrus (RC) grove had a bare soil surface with weeds periodically eliminated by tillage. Citrus crop evapotranspiration (ETc) rates at the two citrus groves were measured by the eddy correlation method, and components in the energy balance were also examined and compared. The study period had higher than average rainfall, and as a result, the two locations had similar annual ETc rates (1069 and 1044 mm for RC and FC, respectively). The ETc rates were 59% (RC) and 47% (FC) of the rainfall amounts during the study period. The annual reference crop evapotranspiration (ETo) rates were 1180 mm for RC and 1419 mm for FC, estimated using the standardized reference evapotranspiration equation. The citrus crop coefficients (Kc, ratio of ETc to ET o) were different between the two locations because of differences in latitude, ground cover, and rainfall amounts. The Kc values ranged from 0.70 between December and March to 1.05 between July and November for RC, and from 0.65 between November and May to 0.85 between June and October for FC. The results are consistent with other Kc values reported from field studies on citrus in both Florida and elsewhere using these and alternate methods.

  14. Simulation of steady-state ground water and spring flow in the upper Floridan aquifer of coastal Citrus and Hernando Counties, Florida

    USGS Publications Warehouse

    Yobbi, D.K.

    1989-01-01

    A digital groundwater flow model was developed to approximate steady-state predevelopment flow conditions in the Upper Floridan aquifer of coastal west-central Florida. The aquifer is the major source of water and natural spring flow in the area. The aquifer was simulated as a one-layer system with constant vertical recharge and discharge rates. Calibrated transmissivities ranged from 8,640 sq ft/day in the northern part of the area to nearly 13,000,000 sq ft/day near large springs. Calibrated inflows were about 2,708 cu ft/sec; of this, about 2,565 cu ft/sec discharged as natural spring flow and 137 cu ft/sec discharged as upward leakage along the coast. The model was used to show how the system might respond to large manmade stresses. Withdrawal of 116 cu ft/sec from a hypothetical regional well field resulted in potentiometric-surface drawdowns ranging from 0.1 to 1.7 ft and declines of generally less than 0.2 ft along the coast. Total spring flow decreased 5%, and the effect on individual springs varied from 0.1 to 8.0%. Withdrawal of 62 cu ft/sec from the 4-sq-mi node at each spring resulted in six of seven springs to the south of the Chassahowitzka River contributing 50% of their flow to pumpage. Springs located north of the Chassahowitzka River contributed as much as 18% of their flow to pumpage. (USGS)

  15. Correlation of an electrical penetration graph waveform with walking by Asian citrus psyllid, Diaphorina citri Kuwayama

    Technology Transfer Automated Retrieval System (TEKTRAN)

    Electrical penetration graph (EPG) monitoring is being used to study how feeding behavior of the Asian citrus psyllid (ACP) (Diaphorina citri Kuwayama) changes in response to insecticides, in an effort to improve the efficacy of widespread insecticide treatments against the insect in Florida citrus....

  16. A comparison of sticky traps for monitoring Asian citrus psyllid (Diaphorina citri Kuwayama)

    Technology Transfer Automated Retrieval System (TEKTRAN)

    Six types of sticky card traps differing in color and trapping adhesive were evaluated for monitoring Asian citrus psyllid in citrus in the United States (Florida and Texas). Spectral reflectance measurements were taken to categorize the color (wavelength) spectrum of each trap. Three of the traps (...

  17. Differential response of citrus rootstocks to CuEDTA concentration in sand culture

    Technology Transfer Automated Retrieval System (TEKTRAN)

    Florida citrus groves that have been under continuous production for many years often have high levels of soil-fraction copper (Cu) from the use of Cu-containing fertilizers and pesticides. On such groves, citrus trees may develop Cu toxicity which negatively impacts growth and nutrition. The object...

  18. Use of Psyllids in Early Identification of Huanglongbing Disease of Citrus

    Technology Transfer Automated Retrieval System (TEKTRAN)

    Huanglongbing (HLB), also known as citrus greening disease, is the most destructive disease of citrus. The disease is caused by three different species of phloem limited bacteria belonging to Candidatus Liberibacter. HLB was reported from Brazil in 2004 and Florida in 2005. Because of the non-specif...

  19. Mercury Metadata Toolset

    SciTech Connect

    2009-09-08

    Mercury is a federated metadata harvesting, search and retrieval tool based on both open source software and software developed at Oak Ridge National Laboratory. It was originally developed for NASA, and the Mercury development consortium now includes funding from NASA, USGS, and DOE. A major new version of Mercury (version 3.0) was developed during 2007 and released in early 2008. This Mercury 3.0 version provides orders of magnitude improvements in search speed, support for additional metadata formats, integration with Google Maps for spatial queries, facetted type search, support for RSS delivery of search results, and ready customization to meet the needs of the multiple projects which use Mercury. For the end users, Mercury provides a single portal to very quickly search for data and information contained in disparate data management systems. It collects metadata and key data from contributing project servers distributed around the world and builds a centralized index. The Mercury search interfaces then allow the users to perform simple, fielded, spatial, and temporal searches across these metadata sources. This centralized repository of metadata with distributed data sources provides extremely fast search results to the user, while allowing data providers to advertise the availability of their data and maintain complete control and ownership of that data.

  20. Land cover classification and economic assessment of citrus groves using remote sensing

    NASA Astrophysics Data System (ADS)

    Shrivastava, Rahul J.; Gebelein, Jennifer L.

    The citrus industry has the second largest impact on Florida's economy, following tourism. Estimation of citrus area coverage and annual forecasts of Florida's citrus production are currently dependent on labor-intensive interpretation of aerial photographs. Remotely sensed data from satellites has been widely applied in agricultural yield estimation and cropland management. Satellite data can potentially be obtained throughout the year, making it especially suitable for the detection of land cover change in agriculture and horticulture, plant health status, soil and moisture conditions, and effects of crop management practices. In this study, we analyzed land cover of citrus crops in Florida using Landsat Enhanced Thematic Mapper Plus (ETM+) imagery from the University of Maryland Global Land Cover Facility (GLCF). We hypothesized that an interdisciplinary approach combining citrus production (economic) data with citrus land cover area per county would yield a correlation between observable spectral reflectance throughout the year, and the fiscal impact of citrus on local economies. While the data from official sources based on aerial photography were positively correlated, there were serious discrepancies between agriculture census data and satellite-derived cropland area using medium-resolution satellite imagery. If these discrepancies can be resolved by using imagery of higher spatial resolution, a stronger correlation would be observed for citrus production based on satellite data. This would allow us to predict the economic impact of citrus from satellite-derived spectral data analysis to determine final crop harvests.

  1. Quantitative distribution of 'Candidatus Liberibacter asiaticus' in citrus plants with citrus huanglongbing.

    PubMed

    Li, Wenbin; Levy, Laurene; Hartung, John S

    2009-02-01

    Citrus huanglongbing (HLB), or greening disease, is strongly associated with any of three nonculturable gram-negative bacteria belonging to 'Candidatus Liberibacter spp.' 'Ca. Liberibacter spp.' are transmitted by citrus psyllids to all commercial cultivars of citrus. The diseases can be lethal to citrus and have recently become widespread in both São Paulo, Brazil, and Florida, United States, the locations of the largest citrus industries in the world. Asiatic HLB, the form of the disease found in Florida, is associated with 'Ca. Liberibacter asiaticus' and is the subject of this report. The nonculturable nature of the pathogen has hampered research and little is known about the distribution of 'Ca. L. asiaticus' in infected trees. In this study, we have used a quantitative polymerase chain reaction assay to systematically quantify the distribution of 'Ca. L. asiaticus' genomes in tissues of six species of citrus either identified in the field during survey efforts in Florida or propagated in a greenhouse in Beltsville, MD. The populations of 'Ca. L. asiaticus' inferred from the distribution of 16S rDNA sequences specific for 'Ca. L. asiaticus' in leaf midribs, leaf blades, and bark samples varied by a factor of 1,000 among samples prepared from the six citrus species tested and by a factor of 100 between two sweet orange trees tested. In naturally infected trees, above-ground portions of the tree averaged 10(10) 'Ca. L. asiaticus' genomes per gram of tissue. Similar levels of 'Ca. L. asiaticus' genomes were observed in some but not all root samples from the same plants. In samples taken from greenhouse-inoculated trees, levels of 'Ca. L. asiaticus' genomes varied systematically from 10(4) genomes/g at the graft inoculation site to 10(10) genomes/g in some leaf petioles. Root samples from these trees also contained 'Ca. L. asiaticus' at 10(7) genomes/g. In symptomatic fruit tissues, 'Ca. L. asiaticus' genomes were also readily detected and quantified. The highest

  2. A Metadata Action Language

    NASA Technical Reports Server (NTRS)

    Golden, Keith; Clancy, Dan (Technical Monitor)

    2001-01-01

    The data management problem comprises data processing and data tracking. Data processing is the creation of new data based on existing data sources. Data tracking consists of storing metadata descriptions of available data. This paper addresses the data management problem by casting it as an AI planning problem. Actions are data-processing commands, plans are dataflow programs and goals are metadata descriptions of desired data products. Data manipulation is simply plan generation and execution, and a key component of data tracking is inferring the effects of an observed plan. We introduce a new action language for data management domains, called ADILM. We discuss the connection between data processing and information integration and show how a language for the latter must be modified to support the former. The paper also discusses information gathering within a data-processing framework, and show how ADILM metadata expressions are a generalization of Local Completeness.

  3. Citrus leprosis research update

    Technology Transfer Automated Retrieval System (TEKTRAN)

    Citrus leprosis is one of the oldest citrus diseases, but is also one of the most important emerging citrus diseases in South and Central America, and it is apparently spreading northward towards the U.S. Research in our labs and by others has shown that citrus leprosis disease is caused by a compl...

  4. Simplified Metadata Curation via the Metadata Management Tool

    NASA Astrophysics Data System (ADS)

    Shum, D.; Pilone, D.

    2015-12-01

    The Metadata Management Tool (MMT) is the newest capability developed as part of NASA Earth Observing System Data and Information System's (EOSDIS) efforts to simplify metadata creation and improve metadata quality. The MMT was developed via an agile methodology, taking into account inputs from GCMD's science coordinators and other end-users. In its initial release, the MMT uses the Unified Metadata Model for Collections (UMM-C) to allow metadata providers to easily create and update collection records in the ISO-19115 format. Through a simplified UI experience, metadata curators can create and edit collections without full knowledge of the NASA Best Practices implementation of ISO-19115 format, while still generating compliant metadata. More experienced users are also able to access raw metadata to build more complex records as needed. In future releases, the MMT will build upon recent work done in the community to assess metadata quality and compliance with a variety of standards through application of metadata rubrics. The tool will provide users with clear guidance as to how to easily change their metadata in order to improve their quality and compliance. Through these features, the MMT allows data providers to create and maintain compliant and high quality metadata in a short amount of time.

  5. 78 FR 32068 - Oranges, Grapefruit, Tangerines, and Tangelos Grown in Florida; Revising Reporting Requirements...

    Federal Register 2010, 2011, 2012, 2013, 2014

    2013-05-29

    ... Agricultural Marketing Service 7 CFR Part 905 Oranges, Grapefruit, Tangerines, and Tangelos Grown in Florida... marketing order for oranges, grapefruit, tangerines, and tangelos grown in Florida (order). The Citrus... oranges, grapefruit, tangerines, and tangelos grown in Florida, hereinafter referred to as the...

  6. Avocado pests in Florida: Not what you expected

    Technology Transfer Automated Retrieval System (TEKTRAN)

    Avocado, Persea americana Mill., is Florida's second most important fruit crop after citrus. Until recently, the complex of spider mite and insect pests that affected avocado in south Florida was under a 20 year Integrated Pest Management (IPM) program. The recent invasion of avocado orchards by a...

  7. Metadata Means Communication: The Challenges of Producing Useful Metadata

    NASA Astrophysics Data System (ADS)

    Edwards, P. N.; Batcheller, A. L.

    2010-12-01

    Metadata are increasingly perceived as an important component of data sharing systems. For instance, metadata accompanying atmospheric model output may indicate the grid size, grid type, and parameter settings used in the model configuration. We conducted a case study of a data portal in the atmospheric sciences using in-depth interviews, document review, and observation. OUr analysis revealed a number of challenges in producing useful metadata. First, creating and managing metadata required considerable effort and expertise, yet responsibility for these tasks was ill-defined and diffused among many individuals, leading to errors, failure to capture metadata, and uncertainty about the quality of the primary data. Second, metadata ended up stored in many different forms and software tools, making it hard to manage versions and transfer between formats. Third, the exact meanings of metadata categories remained unsettled and misunderstood even among a small community of domain experts -- an effect we expect to be exacerbated when scientists from other disciplines wish to use these data. In practice, we found that metadata problems due to these obstacles are often overcome through informal, personal communication, such as conversations or email. We conclude that metadata serve to communicate the context of data production from the people who produce data to those who wish to use it. Thus while formal metadata systems are often public, critical elements of metadata (those embodied in informal communication) may never be recorded. Therefore, efforts to increase data sharing should include ways to facilitate inter-investigator communication. Instead of tackling metadata challenges only on the formal level, we can improve data usability for broader communities by better supporting metadata communication.

  8. Economic analysis of ethanol production from citrus peel waste

    Technology Transfer Automated Retrieval System (TEKTRAN)

    The Florida citrus juice industry produces about 3.5 million tons of wet peel waste per year. In current industrial practice, waste peels are dried and sold as cattle feed to offset the waste disposal cost. Profitability would be greatly improved if peel could be used to produce higher value produ...

  9. Economic analysis of ethanol production from citrus peel waste

    Technology Transfer Automated Retrieval System (TEKTRAN)

    The Florida citrus juice industry produces about 3-4 million tons of wet peel waste per year. In current industrial practices, waste peels are dried and sold as cattle feed to offset the waste disposal cost. Profitability could be greatly improved if this amount of peel can be used to produce high...

  10. Economic analysis of ethanol production from citrus peel waste

    Technology Transfer Automated Retrieval System (TEKTRAN)

    The Florida citrus juice industry produces about 3.5 million tons of wet peel waste per year. In current industrial practice, waste peels are dried and sold as cattle feed to offset the waste disposal cost. Profitability would be greatly improved if peels could be used to produce higher value produ...

  11. Developments in ethanol production from citrus peel waste

    Technology Transfer Automated Retrieval System (TEKTRAN)

    Each year, the Florida citrus juice industry produces about 3.5~5.0 million tons of wet peel waste, which are currently dried and sold as cattle feed, often at a loss, to dispose of the waste residual. Profitability would be greatly improved if the peel waste could be used to produce higher value pr...

  12. Citrus County Professional Orientation Program, 1992-93.

    ERIC Educational Resources Information Center

    Citrus County Board of Public Instruction, Inverness, FL.

    The Citrus County (Florida) Professional Orientation Program is designed to increase student learning by providing a set of supervised support services for teachers in the first year(s) of teaching that will assist them in their continuing professional development. The program provides for the development, demonstration, and documentation of…

  13. Low Energy Technology. A Unit of Instruction in Citrus Production.

    ERIC Educational Resources Information Center

    Olson, Jeanne A.; Becker, William J.

    This unit of instruction on citrus production was designed for use by agribusiness and natural resources teachers in Florida high schools and by agricultural extension agents as they work with adults and students. It is one of a series of 11 instructional units (see note) written to help teachers and agents to educate their students and clients…

  14. Candidatus Liberibacter asiaticus titers in citrus cultivars in the field and in Asian citrus psyllid (ACP) inoculated greenhouse trees

    Technology Transfer Automated Retrieval System (TEKTRAN)

    A survey of seven citrus cultivars (C. sinensis, C. paradisi, ‘Temple’ tangor, ‘Minneola’ and ‘Orlando’ tangelos and, ‘Fallglo’ and ‘Sunburst’ mandarin hybrids) growing in commercial orchards in Florida revealed a correlation between visual ratings of HLB incidence and severity and CLas titer (Stove...

  15. Developing and implementing mating disruption for area-wide control of citrus leafminer and citrus canker disease

    Technology Transfer Automated Retrieval System (TEKTRAN)

    Successful development and commercial launch of the first semiochemical-based control method for a major exotic insect pest and associated disease of citrus in Florida have resulted from vigorous collaboration between university and government researchers with support from private industry and innov...

  16. Influence of limiting and regulating factors on populations of Asian citrus psyllid and the risk of insect and disease outbreaks

    Technology Transfer Automated Retrieval System (TEKTRAN)

    Data from long term monitoring programs in two Florida citrus groves were used to assess Asian citrus psyllid demography and population ecology, which is needed to implement more effective management strategies for huanglongbing. We describe and interpret seasonal patterns and correlations between A...

  17. Whole plant destructive screening for huanglongbing susceptibility with conetainer seedlings exposed to no-choice Asian citrus psyllid inoculation

    Technology Transfer Automated Retrieval System (TEKTRAN)

    Huanglongbing (HLB) is associated with Candidatus Liberibacter asiaticus (Las) and is vectored by the Asian Citrus Psyllid (ACP, Diaphorina citri). HLB is devastating the Florida citrus industry, with production reduced by 60 percent in the last 12 years, and HLB is considered the greatest threat to...

  18. Transmission efficiency of Candidatus Liberibacter asiaticus and progression of Huanglongbing disease in graft- and psyllid-inoculated citrus

    Technology Transfer Automated Retrieval System (TEKTRAN)

    Candidatus Liberibacter asiaticus (Las) is a phloem-limited bacterium associated with Huanglongbing (HLB), one of the most destructive diseases of citrus in Florida and other citrus-producing countries. Natural transmission of Las occurs by the psyllid vector Diaphorina citri, but transmission can a...

  19. Metadata and the Future of Cataloging.

    ERIC Educational Resources Information Center

    El-Sherbini, Magda

    2001-01-01

    Surveys ongoing metadata projects to identify the types of metadata that exist and how they are used; compares and analyzes selected metadata elements to illustrate how they are related to MARC 21 metadata format elements; and discusses metadata standards, Dublin Core, diversity in classification, and the role of the Library of Congress.…

  20. Partnerships To Mine Unexploited Sources of Metadata.

    ERIC Educational Resources Information Center

    Reynolds, Regina Romano

    This paper discusses the metadata created for other purposes as a potential source of bibliographic data. The first section addresses collecting metadata by means of templates, including the Nordic Metadata Project's Dublin Core Metadata Template. The second section considers potential partnerships for re-purposing metadata for bibliographic use,…

  1. Troubled waters: a Florida nightmare

    SciTech Connect

    Cooper, W.

    1984-12-01

    Results of studies of pollution of groundwater in Florida are reported. Vast amounts of the underground water were found to be polluted with ethylene dibromide (EDB) used by Florida farmers since the 1950s as an insecticide. Pollution levels of water in the middle of the citrus belt were found to be as high as 775 ppB when 0.02 ppB has been set by the Florida Agriculture Department as the level for concern. EDB can be removed using activated charcoal filters, or new wells can tap aquifers separated from contaminated ones by beds of impermeable clay. Evidences of contamination of water in specific sites by cresote, sulfuric acid, and heavy metals such as lead and arsenic are mentioned.

  2. Metadata Realities for Cyberinfrastructure: Data Authors as Metadata Creators

    ERIC Educational Resources Information Center

    Mayernik, Matthew Stephen

    2011-01-01

    As digital data creation technologies become more prevalent, data and metadata management are necessary to make data available, usable, sharable, and storable. Researchers in many scientific settings, however, have little experience or expertise in data and metadata management. In this dissertation, I explore the everyday data and metadata…

  3. Cytometry metadata in XML

    NASA Astrophysics Data System (ADS)

    Leif, Robert C.; Leif, Stephanie H.

    2016-04-01

    Introduction: The International Society for Advancement of Cytometry (ISAC) has created a standard for the Minimum Information about a Flow Cytometry Experiment (MIFlowCyt 1.0). CytometryML will serve as a common metadata standard for flow and image cytometry (digital microscopy). Methods: The MIFlowCyt data-types were created, as is the rest of CytometryML, in the XML Schema Definition Language (XSD1.1). The datatypes are primarily based on the Flow Cytometry and the Digital Imaging and Communication (DICOM) standards. A small section of the code was formatted with standard HTML formatting elements (p, h1, h2, etc.). Results:1) The part of MIFlowCyt that describes the Experimental Overview including the specimen and substantial parts of several other major elements has been implemented as CytometryML XML schemas (www.cytometryml.org). 2) The feasibility of using MIFlowCyt to provide the combination of an overview, table of contents, and/or an index of a scientific paper or a report has been demonstrated. Previously, a sample electronic publication, EPUB, was created that could contain both MIFlowCyt metadata as well as the binary data. Conclusions: The use of CytometryML technology together with XHTML5 and CSS permits the metadata to be directly formatted and together with the binary data to be stored in an EPUB container. This will facilitate: formatting, data- mining, presentation, data verification, and inclusion in structured research, clinical, and regulatory documents, as well as demonstrate a publication's adherence to the MIFlowCyt standard, promote interoperability and should also result in the textual and numeric data being published using web technology without any change in composition.

  4. Federating Metadata Catalogs

    NASA Astrophysics Data System (ADS)

    Baru, C.; Lin, K.

    2009-04-01

    The Geosciences Network project (www.geongrid.org) has been developing cyberinfrastructure for data sharing in the Earth Science community based on a service-oriented architecture. The project defines a standard "software stack", which includes a standardized set of software modules and corresponding service interfaces. The system employs Grid certificates for distributed user authentication. The GEON Portal provides online access to these services via a set of portlets. This service-oriented approach has enabled the GEON network to easily expand to new sites and deploy the same infrastructure in new projects. To facilitate interoperation with other distributed geoinformatics environments, service standards are being defined and implemented for catalog services and federated search across distributed catalogs. The need arises because there may be multiple metadata catalogs in a distributed system, for example, for each institution, agency, geographic region, and/or country. Ideally, a geoinformatics user should be able to search across all such catalogs by making a single search request. In this paper, we describe our implementation for such a search capability across federated metadata catalogs in the GEON service-oriented architecture. The GEON catalog can be searched using spatial, temporal, and other metadata-based search criteria. The search can be invoked as a Web service and, thus, can be imbedded in any software application. The need for federated catalogs in GEON arises because, (i) GEON collaborators at the University of Hyderabad, India have deployed their own catalog, as part of the iGEON-India effort, to register information about local resources for broader access across the network, (ii) GEON collaborators in the GEO Grid (Global Earth Observations Grid) project at AIST, Japan have implemented a catalog for their ASTER data products, and (iii) we have recently deployed a search service to access all data products from the EarthScope project in the US

  5. Java Metadata Facility

    SciTech Connect

    Buttler, D J

    2008-03-06

    The Java Metadata Facility is introduced by Java Specification Request (JSR) 175 [1], and incorporated into the Java language specification [2] in version 1.5 of the language. The specification allows annotations on Java program elements: classes, interfaces, methods, and fields. Annotations give programmers a uniform way to add metadata to program elements that can be used by code checkers, code generators, or other compile-time or runtime components. Annotations are defined by annotation types. These are defined the same way as interfaces, but with the symbol {at} preceding the interface keyword. There are additional restrictions on defining annotation types: (1) They cannot be generic; (2) They cannot extend other annotation types or interfaces; (3) Methods cannot have any parameters; (4) Methods cannot have type parameters; (5) Methods cannot throw exceptions; and (6) The return type of methods of an annotation type must be a primitive, a String, a Class, an annotation type, or an array, where the type of the array is restricted to one of the four allowed types. See [2] for additional restrictions and syntax. The methods of an annotation type define the elements that may be used to parameterize the annotation in code. Annotation types may have default values for any of its elements. For example, an annotation that specifies a defect report could initialize an element defining the defect outcome submitted. Annotations may also have zero elements. This could be used to indicate serializability for a class (as opposed to the current Serializability interface).

  6. Applied Parallel Metadata Indexing

    SciTech Connect

    Jacobi, Michael R

    2012-08-01

    The GPFS Archive is parallel archive is a parallel archive used by hundreds of users in the Turquoise collaboration network. It houses 4+ petabytes of data in more than 170 million files. Currently, users must navigate the file system to retrieve their data, requiring them to remember file paths and names. A better solution might allow users to tag data with meaningful labels and searach the archive using standard and user-defined metadata, while maintaining security. last summer, I developed the backend to a tool that adheres to these design goals. The backend works by importing GPFS metadata into a MongoDB cluster, which is then indexed on each attribute. This summer, the author implemented security and developed the user interfae for the search tool. To meet security requirements, each database table is associated with a single user, which only stores records that the user may read, and requires a set of credentials to access. The interface to the search tool is implemented using FUSE (Filesystem in USErspace). FUSE is an intermediate layer that intercepts file system calls and allows the developer to redefine how those calls behave. In the case of this tool, FUSE interfaces with MongoDB to issue queries and populate output. A FUSE implementation is desirable because it allows users to interact with the search tool using commands they are already familiar with. These security and interface additions are essential for a usable product.

  7. Creating preservation metadata from XML-metadata profiles

    NASA Astrophysics Data System (ADS)

    Ulbricht, Damian; Bertelmann, Roland; Gebauer, Petra; Hasler, Tim; Klump, Jens; Kirchner, Ingo; Peters-Kottig, Wolfgang; Mettig, Nora; Rusch, Beate

    2014-05-01

    Registration of dataset DOIs at DataCite makes research data citable and comes with the obligation to keep data accessible in the future. In addition, many universities and research institutions measure data that is unique and not repeatable like the data produced by an observational network and they want to keep these data for future generations. In consequence, such data should be ingested in preservation systems, that automatically care for file format changes. Open source preservation software that is developed along the definitions of the ISO OAIS reference model is available but during ingest of data and metadata there are still problems to be solved. File format validation is difficult, because format validators are not only remarkably slow - due to variety in file formats different validators return conflicting identification profiles for identical data. These conflicts are hard to resolve. Preservation systems have a deficit in the support of custom metadata. Furthermore, data producers are sometimes not aware that quality metadata is a key issue for the re-use of data. In the project EWIG an university institute and a research institute work together with Zuse-Institute Berlin, that is acting as an infrastructure facility, to generate exemplary workflows for research data into OAIS compliant archives with emphasis on the geosciences. The Institute for Meteorology provides timeseries data from an urban monitoring network whereas GFZ Potsdam delivers file based data from research projects. To identify problems in existing preservation workflows the technical work is complemented by interviews with data practitioners. Policies for handling data and metadata are developed. Furthermore, university teaching material is created to raise the future scientists awareness of research data management. As a testbed for ingest workflows the digital preservation system Archivematica [1] is used. During the ingest process metadata is generated that is compliant to the

  8. The New Online Metadata Editor for Generating Structured Metadata

    NASA Astrophysics Data System (ADS)

    Devarakonda, R.; Shrestha, B.; Palanisamy, G.; Hook, L.; Killeffer, T.; Boden, T.; Cook, R. B.; Zolly, L.; Hutchison, V.; Frame, M. T.; Cialella, A. T.; Lazer, K.

    2014-12-01

    Nobody is better suited to "describe" data than the scientist who created it. This "description" about a data is called Metadata. In general terms, Metadata represents the who, what, when, where, why and how of the dataset. eXtensible Markup Language (XML) is the preferred output format for metadata, as it makes it portable and, more importantly, suitable for system discoverability. The newly developed ORNL Metadata Editor (OME) is a Web-based tool that allows users to create and maintain XML files containing key information, or metadata, about the research. Metadata include information about the specific projects, parameters, time periods, and locations associated with the data. Such information helps put the research findings in context. In addition, the metadata produced using OME will allow other researchers to find these data via Metadata clearinghouses like Mercury [1] [2]. Researchers simply use the ORNL Metadata Editor to enter relevant metadata into a Web-based form. How is OME helping Big Data Centers like ORNL DAAC? The ORNL DAAC is one of NASA's Earth Observing System Data and Information System (EOSDIS) data centers managed by the ESDIS Project. The ORNL DAAC archives data produced by NASA's Terrestrial Ecology Program. The DAAC provides data and information relevant to biogeochemical dynamics, ecological data, and environmental processes, critical for understanding the dynamics relating to the biological components of the Earth's environment. Typically data produced, archived and analyzed is at a scale of multiple petabytes, which makes the discoverability of the data very challenging. Without proper metadata associated with the data, it is difficult to find the data you are looking for and equally difficult to use and understand the data. OME will allow data centers like the ORNL DAAC to produce meaningful, high quality, standards-based, descriptive information about their data products in-turn helping with the data discoverability and

  9. Mercury Toolset for Spatiotemporal Metadata

    NASA Astrophysics Data System (ADS)

    Devarakonda, Ranjeet; Palanisamy, Giri; Green, James; Wilson, Bruce; Rhyne, B. Timothy; Lindsley, Chris

    2010-06-01

    Mercury (http://mercury.ornl.gov) is a set of tools for federated harvesting, searching, and retrieving metadata, particularly spatiotemporal metadata. Version 3.0 of the Mercury toolset provides orders of magnitude improvements in search speed, support for additional metadata formats, integration with Google Maps for spatial queries, facetted type search, support for RSS (Really Simple Syndication) delivery of search results, and enhanced customization to meet the needs of the multiple projects that use Mercury. It provides a single portal to very quickly search for data and information contained in disparate data management systems, each of which may use different metadata formats. Mercury harvests metadata and key data from contributing project servers distributed around the world and builds a centralized index. The search interfaces then allow the users to perform a variety of fielded, spatial, and temporal searches across these metadata sources. This centralized repository of metadata with distributed data sources provides extremely fast search results to the user, while allowing data providers to advertise the availability of their data and maintain complete control and ownership of that data. Mercury periodically (typically daily)harvests metadata sources through a collection of interfaces and re-indexes these metadata to provide extremely rapid search capabilities, even over collections with tens of millions of metadata records. A number of both graphical and application interfaces have been constructed within Mercury, to enable both human users and other computer programs to perform queries. Mercury was also designed to support multiple different projects, so that the particular fields that can be queried and used with search filters are easy to configure for each different project.

  10. Mercury Toolset for Spatiotemporal Metadata

    NASA Technical Reports Server (NTRS)

    Wilson, Bruce E.; Palanisamy, Giri; Devarakonda, Ranjeet; Rhyne, B. Timothy; Lindsley, Chris; Green, James

    2010-01-01

    Mercury (http://mercury.ornl.gov) is a set of tools for federated harvesting, searching, and retrieving metadata, particularly spatiotemporal metadata. Version 3.0 of the Mercury toolset provides orders of magnitude improvements in search speed, support for additional metadata formats, integration with Google Maps for spatial queries, facetted type search, support for RSS (Really Simple Syndication) delivery of search results, and enhanced customization to meet the needs of the multiple projects that use Mercury. It provides a single portal to very quickly search for data and information contained in disparate data management systems, each of which may use different metadata formats. Mercury harvests metadata and key data from contributing project servers distributed around the world and builds a centralized index. The search interfaces then allow the users to perform a variety of fielded, spatial, and temporal searches across these metadata sources. This centralized repository of metadata with distributed data sources provides extremely fast search results to the user, while allowing data providers to advertise the availability of their data and maintain complete control and ownership of that data. Mercury periodically (typically daily) harvests metadata sources through a collection of interfaces and re-indexes these metadata to provide extremely rapid search capabilities, even over collections with tens of millions of metadata records. A number of both graphical and application interfaces have been constructed within Mercury, to enable both human users and other computer programs to perform queries. Mercury was also designed to support multiple different projects, so that the particular fields that can be queried and used with search filters are easy to configure for each different project.

  11. Making Metadata Better with CMR and MMT

    NASA Technical Reports Server (NTRS)

    Gilman, Jason Arthur; Shum, Dana

    2016-01-01

    Ensuring complete, consistent and high quality metadata is a challenge for metadata providers and curators. The CMR and MMT systems provide providers and curators options to build in metadata quality from the start and also assess and improve the quality of already existing metadata.

  12. Collection Metadata Solutions for Digital Library Applications.

    ERIC Educational Resources Information Center

    Hill, Linda L.; Janee, Greg; Dolin, Ron; Frew, James; Larsgaard, Mary

    1999-01-01

    Defines digital library collections and outlines two classes of collection metadata. Describes the Alexandria Digital Library (ADL) Project approach to collection metadata, including the ADL system architecture and collection guidelines and the format and use of the ADL collection metadata. Appendices include ADL collection metadata and example.…

  13. Citrus Waste Biomass Program

    SciTech Connect

    Karel Grohman; Scott Stevenson

    2007-01-30

    Renewable Spirits is developing an innovative pilot plant bio-refinery to establish the commercial viability of ehtanol production utilizing a processing waste from citrus juice production. A novel process based on enzymatic hydrolysis of citrus processing waste and fermentation of resulting sugars to ethanol by yeasts was successfully developed in collaboration with a CRADA partner, USDA/ARS Citrus and Subtropical Products Laboratory. The process was also successfully scaled up from laboratory scale to 10,000 gal fermentor level.

  14. Metadata Dictionary Database: A Proposed Tool for Academic Library Metadata Management

    ERIC Educational Resources Information Center

    Southwick, Silvia B.; Lampert, Cory

    2011-01-01

    This article proposes a metadata dictionary (MDD) be used as a tool for metadata management. The MDD is a repository of critical data necessary for managing metadata to create "shareable" digital collections. An operational definition of metadata management is provided. The authors explore activities involved in metadata management in…

  15. Water Use in Florida, 2005 and Trends 1950-2005

    USGS Publications Warehouse

    Marella, Richard L.

    2008-01-01

    Water is among Florida's most valued resources. The State has more than 1,700 streams and rivers, 7,800 freshwater lakes, 700 springs, 11 million acres of wetlands, and underlying aquifers yielding quantities of freshwater necessary for both human and environmental needs (Fernald and Purdum, 1998). Although renewable, these water resources are finite, and continued growth in population, tourism, and agriculture will place increased demands on these water supplies. The permanent population of Florida in 2005 totaled 17.9 million, ranking fourth in the Nation (University of Florida, 2006); nearly 86 million tourists visited the State (Orlando Business Journal, 2006). In 2005, Florida harvested two-thirds of the total citrus production in the United States and ranked fifth in the Nation net farm income (Florida Department of Agriculture and Consumer Services, 2006). Freshwater is vital for sustaining Florida's population, economy, and agricultural production. Accurate estimates reflecting water use and trends in Florida are compiled in 5-year intervals by the U.S. Geological Survey (USGS) in cooperation with the Florida Department of Environmental Protection (FDEP) and the Northwest Florida, St. Johns River, South Florida, Southwest Florida, and Suwannee River Water Management Districts (Marella, 2004). This coordinated effort provides the necessary data and information for planning future water needs and resource management. The purpose of this fact sheet is to present the highlights of water use in Florida for 2005 along with some significant trends in withdrawals since 1950.

  16. “Candidatus liberibacter sp.”, without koch's postulates completed, can the bacterium be considered as the causal agent of citrus Huanglongbing (yellow shoot disease)?

    Technology Transfer Automated Retrieval System (TEKTRAN)

    Huanglongbing (HLB) or yellow shoot disease is a destructive disease that threatens citrus production worldwide. The emergence of HLB in Sao Paulo, State of Brazil in 2004 and in Florida of the U.S. in 2005 has increased concern in the citrus production community in the USA. Intensive research is cu...

  17. Evaluation of the effects of light source and plant materials in psyllid trapping levels in the traps for citrus shipping containers

    Technology Transfer Automated Retrieval System (TEKTRAN)

    The Asian citrus psyllid (ACP), the principle vector for Huanglongbing (HLB), has been reported to be transported in truckloads of oranges in Florida. Citrus, especially Key limes and lemons, are shipped to the U.S. from Mexican states that are heavily infested with HLB and live, infected psyllids c...

  18. Certification Programs for Citrus

    Technology Transfer Automated Retrieval System (TEKTRAN)

    Citrus certification programs designed to ensure that healthy plants of the highest genetic potential are being planted in the field are the basic building block of an integrated pest management program. Certification programs began for citrus began with the discovery that the diseases were graft t...

  19. Cercosporoid diseases of Citrus.

    PubMed

    Huang, Feng; Groenewald, J Z; Zhu, Li; Crous, P W; Li, Hongye

    2015-01-01

    Citrus leaves and fruits exhibiting disease symptoms ranging from greasy spot, yellow spot, small or large brown spot, black dot, and brown dot were sampled from Fujian, Guangdong, Guizhou, Hunan, Jiangxi, Yunnan, Zhejiang provinces and the Guangxi Zhuang Autonomous Region in China. In total 82 isolates representing various cercosporoid genera were isolated from these disease symptoms, which were supplemented with eight Citrus cercosporoid isolates collected from other countries. Based on a morphological and phylogenetic study using sequence data from the nuclear ribosomal DNA's ITS1-5.8S-ITS2 regions (ITS), and partial actin (act), β-tubulin (tub2), 28S nuclear ribosomal RNA (28S rDNA) and translation elongation factor 1-α (tef1) genes, these strains were placed in the following genera: Cercospora, Pallidocercospora, Passalora, Pseudocercospora, Verrucisporota and Zasmidium. All isolates tended to be sterile, except the Zasmidium isolates associated with citrus greasy spot-like symptoms, which subsequently were compared with phylogenetically similar isolates occurring on Citrus and other hosts elsewhere. From these results four Zasmidium species were recognized on Citrus, namely Z. indonesianum on Citrus in Indonesia, Z. fructicola and Z. fructigenum on Citrus in China and Z. citri-griseum, which appears to have a wide host range including Acacia, Citrus, Eucalyptus and Musa, as well as a global distribution.

  20. Master Metadata Repository and Metadata-Management System

    NASA Technical Reports Server (NTRS)

    Armstrong, Edward; Reed, Nate; Zhang, Wen

    2007-01-01

    A master metadata repository (MMR) software system manages the storage and searching of metadata pertaining to data from national and international satellite sources of the Global Ocean Data Assimilation Experiment (GODAE) High Resolution Sea Surface Temperature Pilot Project [GHRSSTPP]. These sources produce a total of hundreds of data files daily, each file classified as one of more than ten data products representing global sea-surface temperatures. The MMR is a relational database wherein the metadata are divided into granulelevel records [denoted file records (FRs)] for individual satellite files and collection-level records [denoted data set descriptions (DSDs)] that describe metadata common to all the files from a specific data product. FRs and DSDs adhere to the NASA Directory Interchange Format (DIF). The FRs and DSDs are contained in separate subdatabases linked by a common field. The MMR is configured in MySQL database software with custom Practical Extraction and Reporting Language (PERL) programs to validate and ingest the metadata records. The database contents are converted into the Federal Geographic Data Committee (FGDC) standard format by use of the Extensible Markup Language (XML). A Web interface enables users to search for availability of data from all sources.

  1. Abundance of citrus leafminer larvae on citrus and citrus-related germplasm

    Technology Transfer Automated Retrieval System (TEKTRAN)

    The citrus leafminer, Phyllocnistis citrella Stainton (Lepidoptera: Gracillariidae), is a key pest in most citrus growing regions worldwide. Adult citrus leafminers oviposit primarily on young elongating flush of citrus as well as other Rutaceae and some ornamental plants. Larvae feed on the epiderm...

  2. THE NEW ONLINE METADATA EDITOR FOR GENERATING STRUCTURED METADATA

    SciTech Connect

    Devarakonda, Ranjeet; Shrestha, Biva; Palanisamy, Giri; Hook, Leslie A; Killeffer, Terri S; Boden, Thomas A; Cook, Robert B; Zolly, Lisa; Hutchison, Viv; Frame, Mike; Cialella, Alice; Lazer, Kathy

    2014-01-01

    Nobody is better suited to describe data than the scientist who created it. This description about a data is called Metadata. In general terms, Metadata represents the who, what, when, where, why and how of the dataset [1]. eXtensible Markup Language (XML) is the preferred output format for metadata, as it makes it portable and, more importantly, suitable for system discoverability. The newly developed ORNL Metadata Editor (OME) is a Web-based tool that allows users to create and maintain XML files containing key information, or metadata, about the research. Metadata include information about the specific projects, parameters, time periods, and locations associated with the data. Such information helps put the research findings in context. In addition, the metadata produced using OME will allow other researchers to find these data via Metadata clearinghouses like Mercury [2][4]. OME is part of ORNL s Mercury software fleet [2][3]. It was jointly developed to support projects funded by the United States Geological Survey (USGS), U.S. Department of Energy (DOE), National Aeronautics and Space Administration (NASA) and National Oceanic and Atmospheric Administration (NOAA). OME s architecture provides a customizable interface to support project-specific requirements. Using this new architecture, the ORNL team developed OME instances for USGS s Core Science Analytics, Synthesis, and Libraries (CSAS&L), DOE s Next Generation Ecosystem Experiments (NGEE) and Atmospheric Radiation Measurement (ARM) Program, and the international Surface Ocean Carbon Dioxide ATlas (SOCAT). Researchers simply use the ORNL Metadata Editor to enter relevant metadata into a Web-based form. From the information on the form, the Metadata Editor can create an XML file on the server that the editor is installed or to the user s personal computer. Researchers can also use the ORNL Metadata Editor to modify existing XML metadata files. As an example, an NGEE Arctic scientist use OME to register

  3. Italian Polar Metadata System

    NASA Astrophysics Data System (ADS)

    Longo, S.; Nativi, S.; Leone, C.; Migliorini, S.; Mazari Villanova, L.

    2012-04-01

    Italian Polar Metadata System C.Leone, S.Longo, S.Migliorini, L.Mazari Villanova, S. Nativi The Italian Antarctic Research Programme (PNRA) is a government initiative funding and coordinating scientific research activities in polar regions. PNRA manages two scientific Stations in Antarctica - Concordia (Dome C), jointly operated with the French Polar Institute "Paul Emile Victor", and Mario Zucchelli (Terra Nova Bay, Southern Victoria Land). In addition National Research Council of Italy (CNR) manages one scientific Station in the Arctic Circle (Ny-Alesund-Svalbard Islands), named Dirigibile Italia. PNRA started in 1985 with the first Italian Expedition in Antarctica. Since then each research group has collected data regarding biology and medicine, geodetic observatory, geophysics, geology, glaciology, physics and atmospheric chemistry, earth-sun relationships and astrophysics, oceanography and marine environment, chemistry contamination, law and geographic science, technology, multi and inter disciplinary researches, autonomously with different formats. In 2010 the Italian Ministry of Research assigned the scientific coordination of the Programme to CNR, which is in charge of the management and sharing of the scientific results carried out in the framework of the PNRA. Therefore, CNR is establishing a new distributed cyber(e)-infrastructure to collect, manage, publish and share polar research results. This is a service-based infrastructure building on Web technologies to implement resources (i.e. data, services and documents) discovery, access and visualization; in addition, semantic-enabled functionalities will be provided. The architecture applies the "System of Systems" principles to build incrementally on the existing systems by supplementing but not supplanting their mandates and governance arrangements. This allows to keep the existing capacities as autonomous as possible. This cyber(e)-infrastructure implements multi-disciplinary interoperability following

  4. Transmission Rates of ‘Ca. Liberibacter asiaticus’ by Asian Citrus Psyllid Are Enhanced by the Presence and Developmental Stage of Citrus Flush.

    PubMed

    Hall, David G; Albrecht, Ute; Bowman, Kim D

    2016-04-01

    Asian citrus psyllid (Diaphorina citri Kuwayama) transmits a bacterium ‘Candidatus Liberibacter asiaticus’ (CLas) putatively responsible for a devastating citrus disease known as Asiatic huanglongbing (HLB) (citrus greening disease). The psyllid and disease have invaded many citrus-growing regions including the United States, where the disease is seriously jeopardizing the Florida citrus industry. We recently concluded research that showed CLas transmission rates are increased when citrus flush is present. Flush is any new leaf growth ranging in development from first emergence up until the leaves are fully expanded yet still tender. In an experiment with seedlings of a rootstock cultivar ‘US-942’, a 1-wk infestation of 20 Asian citrus psyllids from an infected colony resulted in 53–60% of seedlings becoming infected when flush was present compared with only 7% when no flush was present. In a second experiment with ‘US-942’, 77–97% of seedlings became infected when flush was present compared with 40% when no flush was present. A similar experiment with ‘Valencia’ sweet orange resulted in 23, 80, and 3% seedlings becoming infected when young, older, or no flush was present, respectively. Young plants are therefore more likely to contract HLB if flush is present, with older flush promoting higher infection rates under the conditions of this study. Based on this finding, healthy citrus should be protected from Asian citrus psyllid infestations throughout a flush. To evaluate germplasm for CLas resistance, inoculations using infected Asian citrus psyllid would best be achieved if flush is present.

  5. Omics Metadata Management Software (OMMS)

    PubMed Central

    Perez-Arriaga, Martha O; Wilson, Susan; Williams, Kelly P; Schoeniger, Joseph; Waymire, Russel L; Powell, Amy Jo

    2015-01-01

    Next-generation sequencing projects have underappreciated information management tasks requiring detailed attention to specimen curation, nucleic acid sample preparation and sequence production methods required for downstream data processing, comparison, interpretation, sharing and reuse. The few existing metadata management tools for genome-based studies provide weak curatorial frameworks for experimentalists to store and manage idiosyncratic, project-specific information, typically offering no automation supporting unified naming and numbering conventions for sequencing production environments that routinely deal with hundreds, if not thousands of samples at a time. Moreover, existing tools are not readily interfaced with bioinformatics executables, (e.g., BLAST, Bowtie2, custom pipelines). Our application, the Omics Metadata Management Software (OMMS), answers both needs, empowering experimentalists to generate intuitive, consistent metadata, and perform analyses and information management tasks via an intuitive web-based interface. Several use cases with short-read sequence datasets are provided to validate installation and integrated function, and suggest possible methodological road maps for prospective users. Provided examples highlight possible OMMS workflows for metadata curation, multistep analyses, and results management and downloading. The OMMS can be implemented as a stand alone-package for individual laboratories, or can be configured for webbased deployment supporting geographically-dispersed projects. The OMMS was developed using an open-source software base, is flexible, extensible and easily installed and executed. The OMMS can be obtained at http://omms.sandia.gov. Availability The OMMS can be obtained at http://omms.sandia.gov PMID:26124554

  6. New citrus rootstocks released by USDA 2001-2010: Field performance and nursery characteristics

    Technology Transfer Automated Retrieval System (TEKTRAN)

    Four new citrus rootstocks developed by USDA, ARS and released between 2001 and 2010 have gained considerable commercial popularity in Florida and have been used for propagation of more than 2 million trees over the last two years. Trends in commercial use of these rootstocks are discussed. Results ...

  7. Technical and economic assessments of ethanol production from citrus peel waste

    Technology Transfer Automated Retrieval System (TEKTRAN)

    Each year, the Florida citrus juice industry produces about 3.5-5.0 million tons of wet peel waste, which are currently dried and sold as cattle feed, often at a loss, to dispose of the waste residual. Profitability would be greatly improved if the peel waste could be used to produce higher value p...

  8. A Review of Managing Huanglongbing (Citrus Greening) in China Using a Nutritional Approach

    Technology Transfer Automated Retrieval System (TEKTRAN)

    Supplemental nutrition as a part of huanglongbing (HLB) management is being adopted by an increasing number of citrus growers in Florida. The hope is that additional nutrition, especially micronutrients, will extend the productive life of HLB affected trees. Although the approach is recent in the U...

  9. Use of landscape fabric to manage Diaprepes root weevil in citrus groves

    Technology Transfer Automated Retrieval System (TEKTRAN)

    The tropical root weevil, Diaprepes abbreviatus, is a major pest of citrus and other crops through the Caribbean and the southern parts of Florida, Texas and California. The larvae hatch from eggs laid by the female weevils on leaves. The newly hatched larvae fall to the ground where they burrow int...

  10. Winter and spring application of SPLAT-CLM for control of citrus leafminer

    Technology Transfer Automated Retrieval System (TEKTRAN)

    Citrus leafminer, Phyllocnistis citrella Stainton, is active throughout the year in Florida and reproduces on periodic leaf flush in winter. We tested mating disruption in mature grapefruit trees during winter and spring using SPLAT-CLM, an emulsified wax with prolonged release of the insect’s prima...

  11. Transcriptional response of susceptible and tolerant citrus to infection with Candidatus Liberibacter asiaticus

    Technology Transfer Automated Retrieval System (TEKTRAN)

    Candidatus Liberibacter asiaticus (Las), a non-culturable phloem-limited bacterium, is the suspected causal agent of Huanglongbing (HLB) in Florida. HLB is one of the most devastating diseases of citrus and no resistant cultivars have been identified to date, though tolerance has been observed in t...

  12. Guava SSR analysis: Diversity assessment and similarity to accessions associated with reducing citrus greening in Vietnam

    Technology Transfer Automated Retrieval System (TEKTRAN)

    The guava (Psidium guajava) is an evergreen tree in the Myrtaceae, native to tropical America. It is grown throughout the tropics and subtropics of the world, and is used as a fresh fruit and processed into juice, jelly and paste. Recent introduction of citrus greening (huanglongbing) into Florida...

  13. History and Diversity of Citrus leprosis virus Recorded in Herbarium Specimens.

    PubMed

    Hartung, John S; Roy, Avijit; Fu, Shimin; Shao, Jonathan; Schneider, William L; Brlansky, Ronald H

    2015-09-01

    Leprosis refers to two diseases of citrus that present similar necrotic local lesions, often surrounded by chlorotic haloes on citrus. Two distinct viruses are associated with this disease, one that produces particles primarily in the nucleus of infected plant cells (Citrus leprosis virus nuclear type [CiLV-N]; Dichorhavirus) and another type that produces particles in the cytoplasm of infected plant cells (Citrus leprosis virus cytoplasmic type [CiLV-C]; Cilevirus). Both forms are transmitted by Brevipalpid mites and have bipartite, single-stranded, RNA genomes. CiLV-C and CiLV-N are present in South and Central America and as far north as parts of Mexico. Although leprosis disease was originally described from Florida, it disappeared from there in the 1960s. The United States Department of Agriculture-Agricultural Research Service maintains preserved citrus specimens identified at inspection stations 50 or more years ago with symptoms of citrus leprosis. We isolated RNA from these samples and performed degradome sequencing. We obtained nearly full-length genome sequences of both a typical CiLV-C isolate intercepted from Argentina in 1967 and a distinct CiLV-N isolate obtained in Florida in 1948. The latter is a novel form of CiLV-N, not known to exist anywhere in the world today. We have also documented the previously unreported presence of CiLV-N in Mexico in the mid-20th century.

  14. Citrus diseases with global ramifications including citrus canker and huanglongbing

    Technology Transfer Automated Retrieval System (TEKTRAN)

    Although there are a number of diseases that plague citrus production worldwide, two bacterial diseases are particularly problematic. Both are of Asian origin and currently cause severe economic damage: Asiatic citrus canker (ACC) and citrus huanglongbing (HLB). Although ACC has been found in the ...

  15. Developing Transgenic Citrus for Resistance to Huanglongbing and Citrus Canker

    Technology Transfer Automated Retrieval System (TEKTRAN)

    Huanglongbing (HLB) and Citrus Bacterial Canker (CBC) are serious threats to citrus production, and resistant transgenic citrus is desirable. Genes for antimicrobial peptides (AMPs) with diverse promoters have been used to generate thousands of rootstock and scion transformants. D35S::D4E1 transfor...

  16. GEOSS Clearinghouse Quality Metadata Analysis

    NASA Astrophysics Data System (ADS)

    Masó, J.; Díaz, P.; Ninyerola, M.; Sevillano, E.; Pons, X.

    2012-04-01

    The proliferation of similar Earth observation digital data products increases the relevance of data quality information of those datasets. GEOSS is investing important efforts in promoting the acknowledgment of the data quality in Earth observation. Activities, such as the regular meeting of QA4EO and projects as GeoViQua have the aim to make the data quality available and visible in the GEOSS Common Infrastructure (GCI). The clearinghouse is one of the main components of the GCI, which catalogues all the known Earth observation resources and provide it via the GEO Portal. Actually, after several initiatives to stimulate that (such as AIP4) most of the relevant international data providers referenced their data in the GEOSS Component and Service Registry, therefore, the GEOSS clearinghouse can be considered a global catalogue of the main Earth observation products. However, there are some important catalogues still in the process of being integrated. We developed an exhaustive study of the data quality elements available on the metadata catalogue in the GEOSS clearinghouse, to elaborate a state-of-the-art report on data quality. The clearinghouse is harvested using the OGC CSW port. Metadata following the standard ISO 19115 is saved in XML-ISO 19139 files. The semi-automatic methodology, previously applied in regional SDIs studies, generates a big metadata database that can be further analyzed. The number of metadata records harvested was 97203 (October 2011). The two main metadata nodes studied are directly related with data quality information package (DQ_DataQuality) in ISO. These are the quality indicators (DQ_Element) and the lineage information (LI_Lineage). Moreover, we also considered the usage information (MD_Usage). The results reveal 19107 (19.66%) metadata records containing quality indicators; which include a total of 52187 quality indicators. The results show also a main representation of the positional accuracy, with 37.19% of the total

  17. Huanglongbing: Devastating disease of citrus

    Technology Transfer Automated Retrieval System (TEKTRAN)

    Citrus greening or Huanglongbing (HLB) disease is devastating the citrus industry worldwide, from Asia to the Americas. The only major citrus regions free of this disease are the Mediterranean and Australia/New Zealand. To date there is no cure, no resistance and no therapy for HLB and production ra...

  18. The value of citrus genebanking

    Technology Transfer Automated Retrieval System (TEKTRAN)

    Access to diverse citrus genetic resources is critical for breeding new citrus cultivars that have higher quality fruit and improved resistance to pathogens and changing environmental conditions. The USDA-ARS National Clonal Repository for Citrus and Dates (NCGRCD) maintains a very diverse collectio...

  19. Log-less metadata management on metadata server for parallel file systems.

    PubMed

    Liao, Jianwei; Xiao, Guoqiang; Peng, Xiaoning

    2014-01-01

    This paper presents a novel metadata management mechanism on the metadata server (MDS) for parallel and distributed file systems. In this technique, the client file system backs up the sent metadata requests, which have been handled by the metadata server, so that the MDS does not need to log metadata changes to nonvolatile storage for achieving highly available metadata service, as well as better performance improvement in metadata processing. As the client file system backs up certain sent metadata requests in its memory, the overhead for handling these backup requests is much smaller than that brought by the metadata server, while it adopts logging or journaling to yield highly available metadata service. The experimental results show that this newly proposed mechanism can significantly improve the speed of metadata processing and render a better I/O data throughput, in contrast to conventional metadata management schemes, that is, logging or journaling on MDS. Besides, a complete metadata recovery can be achieved by replaying the backup logs cached by all involved clients, when the metadata server has crashed or gone into nonoperational state exceptionally.

  20. Evolution in Metadata Quality: Common Metadata Repository's Role in NASA Curation Efforts

    NASA Technical Reports Server (NTRS)

    Gilman, Jason; Shum, Dana; Baynes, Katie

    2016-01-01

    Metadata Quality is one of the chief drivers of discovery and use of NASA EOSDIS (Earth Observing System Data and Information System) data. Issues with metadata such as lack of completeness, inconsistency, and use of legacy terms directly hinder data use. As the central metadata repository for NASA Earth Science data, the Common Metadata Repository (CMR) has a responsibility to its users to ensure the quality of CMR search results. This poster covers how we use humanizers, a technique for dealing with the symptoms of metadata issues, as well as our plans for future metadata validation enhancements. The CMR currently indexes 35K collections and 300M granules.

  1. EOS ODL Metadata On-line Viewer

    NASA Astrophysics Data System (ADS)

    Yang, J.; Rabi, M.; Bane, B.; Ullman, R.

    2002-12-01

    We have recently developed and deployed an EOS ODL metadata on-line viewer. The EOS ODL metadata viewer is a web server that takes: 1) an EOS metadata file in Object Description Language (ODL), 2) parameters, such as which metadata to view and what style of display to use, and returns an HTML or XML document displaying the requested metadata in the requested style. This tool is developed to address widespread complaints by science community that the EOS Data and Information System (EOSDIS) metadata files in ODL are difficult to read by allowing users to upload and view an ODL metadata file in different styles using a web browser. Users have the selection to view all the metadata or part of the metadata, such as Collection metadata, Granule metadata, or Unsupported Metadata. Choices of display styles include 1) Web: a mouseable display with tabs and turn-down menus, 2) Outline: Formatted and colored text, suitable for printing, 3) Generic: Simple indented text, a direct representation of the underlying ODL metadata, and 4) None: No stylesheet is applied and the XML generated by the converter is returned directly. Not all display styles are implemented for all the metadata choices. For example, Web style is only implemented for Collection and Granule metadata groups with known attribute fields, but not for Unsupported, Other, and All metadata. The overall strategy of the ODL viewer is to transform an ODL metadata file to a viewable HTML in two steps. The first step is to convert the ODL metadata file to an XML using a Java-based parser/translator called ODL2XML. The second step is to transform the XML to an HTML using stylesheets. Both operations are done on the server side. This allows a lot of flexibility in the final result, and is very portable cross-platform. Perl CGI behind the Apache web server is used to run the Java ODL2XML, and then run the results through an XSLT processor. The EOS ODL viewer can be accessed from either a PC or a Mac using Internet

  2. 75 FR 17289 - Citrus Seed Imports; Citrus Greening and Citrus Variegated Chlorosis

    Federal Register 2010, 2011, 2012, 2013, 2014

    2010-04-06

    ... Animal and Plant Health Inspection Service 7 CFR Part 319 RIN 0579-AD07 Citrus Seed Imports; Citrus... States of plants and plant parts, except fruit and seeds, of all genera, species, and varieties of the... of nursery stock to prohibit the importation of propagative seed of several Rutaceae (citrus...

  3. Finding Atmospheric Composition (AC) Metadata

    NASA Technical Reports Server (NTRS)

    Strub, Richard F..; Falke, Stefan; Fiakowski, Ed; Kempler, Steve; Lynnes, Chris; Goussev, Oleg

    2015-01-01

    The Atmospheric Composition Portal (ACP) is an aggregator and curator of information related to remotely sensed atmospheric composition data and analysis. It uses existing tools and technologies and, where needed, enhances those capabilities to provide interoperable access, tools, and contextual guidance for scientists and value-adding organizations using remotely sensed atmospheric composition data. The initial focus is on Essential Climate Variables identified by the Global Climate Observing System CH4, CO, CO2, NO2, O3, SO2 and aerosols. This poster addresses our efforts in building the ACP Data Table, an interface to help discover and understand remotely sensed data that are related to atmospheric composition science and applications. We harvested GCMD, CWIC, GEOSS metadata catalogs using machine to machine technologies - OpenSearch, Web Services. We also manually investigated the plethora of CEOS data providers portals and other catalogs where that data might be aggregated. This poster is our experience of the excellence, variety, and challenges we encountered.Conclusions:1.The significant benefits that the major catalogs provide are their machine to machine tools like OpenSearch and Web Services rather than any GUI usability improvements due to the large amount of data in their catalog.2.There is a trend at the large catalogs towards simulating small data provider portals through advanced services. 3.Populating metadata catalogs using ISO19115 is too complex for users to do in a consistent way, difficult to parse visually or with XML libraries, and too complex for Java XML binders like CASTOR.4.The ability to search for Ids first and then for data (GCMD and ECHO) is better for machine to machine operations rather than the timeouts experienced when returning the entire metadata entry at once. 5.Metadata harvest and export activities between the major catalogs has led to a significant amount of duplication. (This is currently being addressed) 6.Most (if not all

  4. 7 CFR 301.76-3 - Quarantined areas; citrus greening and Asian citrus psyllid.

    Code of Federal Regulations, 2011 CFR

    2011-01-01

    ... 7 Agriculture 5 2011-01-01 2011-01-01 false Quarantined areas; citrus greening and Asian citrus...) ANIMAL AND PLANT HEALTH INSPECTION SERVICE, DEPARTMENT OF AGRICULTURE DOMESTIC QUARANTINE NOTICES Citrus Greening and Asian Citrus Psyllid § 301.76-3 Quarantined areas; citrus greening and Asian citrus...

  5. 7 CFR 301.76-3 - Quarantined areas; citrus greening and Asian citrus psyllid.

    Code of Federal Regulations, 2013 CFR

    2013-01-01

    ... 7 Agriculture 5 2013-01-01 2013-01-01 false Quarantined areas; citrus greening and Asian citrus...) ANIMAL AND PLANT HEALTH INSPECTION SERVICE, DEPARTMENT OF AGRICULTURE DOMESTIC QUARANTINE NOTICES Citrus Greening and Asian Citrus Psyllid § 301.76-3 Quarantined areas; citrus greening and Asian citrus...

  6. 7 CFR 301.76-3 - Quarantined areas; citrus greening and Asian citrus psyllid.

    Code of Federal Regulations, 2014 CFR

    2014-01-01

    ... 7 Agriculture 5 2014-01-01 2014-01-01 false Quarantined areas; citrus greening and Asian citrus...) ANIMAL AND PLANT HEALTH INSPECTION SERVICE, DEPARTMENT OF AGRICULTURE DOMESTIC QUARANTINE NOTICES Citrus Greening and Asian Citrus Psyllid § 301.76-3 Quarantined areas; citrus greening and Asian citrus...

  7. 7 CFR 301.76-3 - Quarantined areas; citrus greening and Asian citrus psyllid.

    Code of Federal Regulations, 2012 CFR

    2012-01-01

    ... 7 Agriculture 5 2012-01-01 2012-01-01 false Quarantined areas; citrus greening and Asian citrus...) ANIMAL AND PLANT HEALTH INSPECTION SERVICE, DEPARTMENT OF AGRICULTURE DOMESTIC QUARANTINE NOTICES Citrus Greening and Asian Citrus Psyllid § 301.76-3 Quarantined areas; citrus greening and Asian citrus...

  8. Antioxidant activity of Citrus fruits.

    PubMed

    Zou, Zhuo; Xi, Wanpeng; Hu, Yan; Nie, Chao; Zhou, Zhiqin

    2016-04-01

    Citrus is well-known for its nutrition and health-promotion values. This reputation is derived from the studies on the biological functions of phytochemicals in Citrus fruits and their derived products in the past decades. In recent years, the antioxidant activity of Citrus fruits and their roles in the prevention and treatment of various human chronic and degenerative diseases have attracted more and more attention. Citrus fruits are suggested to be a good source of dietary antioxidants. To have a better understanding of the mechanism underlying the antioxidant activity of Citrus fruits, we reviewed a study on the antioxidant activity of the phytochemicals in Citrus fruits, introduced methods for antioxidant activity evaluation, discussed the factors which influence the antioxidant activity of Citrus fruits, and summarized the underlying mechanism of action. Some suggestions for future study were also presented.

  9. DIVE Into Metadata With MMI

    NASA Astrophysics Data System (ADS)

    Neiswender, C.; Bermudez, L.; Galbraith, N. R.; Graybeal, J.

    2007-12-01

    Within research environments, good, usable data is paramount to scientific success. However, extremely diverse data is often distributed across many institutions, collected in a variety of ways, and stored in dissimilar systems. Standards-based interoperability is the key to harnessing this variety into a strategic set of usable data. As a community collaboration, the Marine Metadata Interoperability project (MMI) exists to promote the exchange, integration and use of marine data through enhanced data publishing, discovery, documentation and accessibility. To accomplish these goals, MMI has established a collaborative web environment (http://marinemetadata.org), informative guides, workshops on current topics, vocabulary working groups, and interoperable projects (OOSTethys and the OGC Oceans Interoperability Experiment, http://www.oostethys.org/). In January 2008, MMI will launch a new initiative: the DIVE Strike Force. Called DIVE for Discover, Interrogate, Validate and Educate. The MMI strike force initiative will facilitate concentrated research into a specific area needed by the marine science community. Each focused team of scientists, technologists and data managers will work to comprehensively review and explain existing capabilities and best practices, comparing existing solutions for the community. For this first DIVE Strike Force, team efforts will be focused on metadata tools. The Tools Strike Force will: * Discover available tools for the creation and publication of metadata and metadata vocabularies; * Interrogate the community about each tool, assessing criteria to be agreed upon, for example the capabilities of each, strengths and weaknesses, level of adoption, and where each tool would best be used; * Validate the best and most applicable tools objectively; * Educate the wider marine metadata community using the MMI webpage, and other resources as appropriate. Participants in each DIVE will be solicited from throughout the community, and

  10. Enriched Video Semantic Metadata: Authorization, Integration, and Presentation.

    ERIC Educational Resources Information Center

    Mu, Xiangming; Marchionini, Gary

    2003-01-01

    Presents an enriched video metadata framework including video authorization using the Video Annotation and Summarization Tool (VAST)-a video metadata authorization system that integrates both semantic and visual metadata-- metadata integration, and user level applications. Results demonstrated that the enriched metadata were seamlessly…

  11. Managing Complex Change in Clinical Study Metadata

    PubMed Central

    Brandt, Cynthia A.; Gadagkar, Rohit; Rodriguez, Cesar; Nadkarni, Prakash M.

    2004-01-01

    In highly functional metadata-driven software, the interrelationships within the metadata become complex, and maintenance becomes challenging. We describe an approach to metadata management that uses a knowledge-base subschema to store centralized information about metadata dependencies and use cases involving specific types of metadata modification. Our system borrows ideas from production-rule systems in that some of this information is a high-level specification that is interpreted and executed dynamically by a middleware engine. Our approach is implemented in TrialDB, a generic clinical study data management system. We review approaches that have been used for metadata management in other contexts and describe the features, capabilities, and limitations of our system. PMID:15187070

  12. Determination of polymethoxylated flavones in peels of selected Jamaican and Mexican citrus (Citrus spp.) cultivars by high-performance liquid chromatography.

    PubMed

    Green, Curtis O; Wheatley, Andrew O; Osagie, Anthony U; St A Morrison, Errol Y; Asemota, Helen N

    2007-01-01

    The concentrations of the polymethoxylated flavones (PMFs) in peels of selected citrus cultivars grown in Jamaica and Mexico were determined. The PMFs were extracted from sun-dried citrus peels with reagent-grade methanol. Analyses were carried out by reverse-phase HPLC and UV detection. The column used was a C(18) 5 microm (150 x 4.6 mm) Discovery column. Elution was in the gradient mode, using a ternary mobile phase. The results showed that all the citrus cultivars used contained at least three of the six major PMFs quantified. Ortanique peel contained the highest quantity of PMFs (34,393 +/- 272 ppm), followed by tangerine (28,389 +/- 343 ppm) and Mexican sweet orange (sample 1; 21,627 +/- 494 ppm). The major PMFs, i.e. sinensetin, nobiletin, tangeretin, heptamethoxyflavone, tetramethylscutellarein and hexamethyl-o-quercetagetin, present in the peels of 20 citrus cultivars, was quantified. The results were compared with those of Florida citrus peels. A large amount of citrus peels and byproducts are produced in the Caribbean which could provide a cheap and convenient source of PMFs.

  13. International Metadata Standards and Enterprise Data Quality Metadata Systems

    NASA Technical Reports Server (NTRS)

    Habermann, Ted

    2016-01-01

    Well-documented data quality is critical in situations where scientists and decision-makers need to combine multiple datasets from different disciplines and collection systems to address scientific questions or difficult decisions. Standardized data quality metadata could be very helpful in these situations. Many efforts at developing data quality standards falter because of the diversity of approaches to measuring and reporting data quality. The one size fits all paradigm does not generally work well in this situation. I will describe these and other capabilities of ISO 19157 with examples of how they are being used to describe data quality across the NASA EOS Enterprise and also compare these approaches with other standards.

  14. Mitogenome metadata: current trends and proposed standards.

    PubMed

    Strohm, Jeff H T; Gwiazdowski, Rodger A; Hanner, Robert

    2016-09-01

    Mitogenome metadata are descriptive terms about the sequence, and its specimen description that allow both to be digitally discoverable and interoperable. Here, we review a sampling of mitogenome metadata published in the journal Mitochondrial DNA between 2005 and 2014. Specifically, we have focused on a subset of metadata fields that are available for GenBank records, and specified by the Genomics Standards Consortium (GSC) and other biodiversity metadata standards; and we assessed their presence across three main categories: collection, biological and taxonomic information. To do this we reviewed 146 mitogenome manuscripts, and their associated GenBank records, and scored them for 13 metadata fields. We also explored the potential for mitogenome misidentification using their sequence diversity, and taxonomic metadata on the Barcode of Life Datasystems (BOLD). For this, we focused on all Lepidoptera and Perciformes mitogenomes included in the review, along with additional mitogenome sequence data mined from Genbank. Overall, we found that none of 146 mitogenome projects provided all the metadata we looked for; and only 17 projects provided at least one category of metadata across the three main categories. Comparisons using mtDNA sequences from BOLD, suggest that some mitogenomes may be misidentified. Lastly, we appreciate the research potential of mitogenomes announced through this journal; and we conclude with a suggestion of 13 metadata fields, available on GenBank, that if provided in a mitogenomes's GenBank record, would increase their research value.

  15. Evaluating the privacy properties of telephone metadata.

    PubMed

    Mayer, Jonathan; Mutchler, Patrick; Mitchell, John C

    2016-05-17

    Since 2013, a stream of disclosures has prompted reconsideration of surveillance law and policy. One of the most controversial principles, both in the United States and abroad, is that communications metadata receives substantially less protection than communications content. Several nations currently collect telephone metadata in bulk, including on their own citizens. In this paper, we attempt to shed light on the privacy properties of telephone metadata. Using a crowdsourcing methodology, we demonstrate that telephone metadata is densely interconnected, can trivially be reidentified, and can be used to draw sensitive inferences.

  16. Evaluating the privacy properties of telephone metadata

    PubMed Central

    Mayer, Jonathan; Mutchler, Patrick; Mitchell, John C.

    2016-01-01

    Since 2013, a stream of disclosures has prompted reconsideration of surveillance law and policy. One of the most controversial principles, both in the United States and abroad, is that communications metadata receives substantially less protection than communications content. Several nations currently collect telephone metadata in bulk, including on their own citizens. In this paper, we attempt to shed light on the privacy properties of telephone metadata. Using a crowdsourcing methodology, we demonstrate that telephone metadata is densely interconnected, can trivially be reidentified, and can be used to draw sensitive inferences. PMID:27185922

  17. Metazen – metadata capture for metagenomes

    DOE PAGES

    Bischof, Jared; Harrison, Travis; Paczian, Tobias; ...

    2014-12-08

    Background: As the impact and prevalence of large-scale metagenomic surveys grow, so does the acute need for more complete and standards compliant metadata. Metadata (data describing data) provides an essential complement to experimental data, helping to answer questions about its source, mode of collection, and reliability. Metadata collection and interpretation have become vital to the genomics and metagenomics communities, but considerable challenges remain, including exchange, curation, and distribution. Currently, tools are available for capturing basic field metadata during sampling, and for storing, updating and viewing it. These tools are not specifically designed for metagenomic surveys; in particular, they lack themore » appropriate metadata collection templates, a centralized storage repository, and a unique ID linking system that can be used to easily port complete and compatible metagenomic metadata into widely used assembly and sequence analysis tools. Results: Metazen was developed as a comprehensive framework designed to enable metadata capture for metagenomic sequencing projects. Specifically, Metazen provides a rapid, easy-to-use portal to encourage early deposition of project and sample metadata. Conclusion: Metazen is an interactive tool that aids users in recording their metadata in a complete and valid format. A defined set of mandatory fields captures vital information, while the option to add fields provides flexibility.« less

  18. Metazen – metadata capture for metagenomes

    SciTech Connect

    Bischof, Jared; Harrison, Travis; Paczian, Tobias; Glass, Elizabeth; Wilke, Andreas; Meyer, Folker

    2014-12-08

    Background: As the impact and prevalence of large-scale metagenomic surveys grow, so does the acute need for more complete and standards compliant metadata. Metadata (data describing data) provides an essential complement to experimental data, helping to answer questions about its source, mode of collection, and reliability. Metadata collection and interpretation have become vital to the genomics and metagenomics communities, but considerable challenges remain, including exchange, curation, and distribution. Currently, tools are available for capturing basic field metadata during sampling, and for storing, updating and viewing it. These tools are not specifically designed for metagenomic surveys; in particular, they lack the appropriate metadata collection templates, a centralized storage repository, and a unique ID linking system that can be used to easily port complete and compatible metagenomic metadata into widely used assembly and sequence analysis tools. Results: Metazen was developed as a comprehensive framework designed to enable metadata capture for metagenomic sequencing projects. Specifically, Metazen provides a rapid, easy-to-use portal to encourage early deposition of project and sample metadata. Conclusion: Metazen is an interactive tool that aids users in recording their metadata in a complete and valid format. A defined set of mandatory fields captures vital information, while the option to add fields provides flexibility.

  19. Evaluation of insect repellents to manage the redbay ambrosia beetle, vector of laurel wilt, a lethal disease affecting avocados in Florida

    Technology Transfer Automated Retrieval System (TEKTRAN)

    Production of avocado in Florida is valued at $30 million a year, accounting for twelve percent of the national production. Over 90 percent of avocado in Florida is grown in the southern tip of the peninsula, and avocado is considered Florida’s second most important fruit crop after citrus. The redb...

  20. Temperature Studies with the Asian Citrus Psyllid, Diaphorina citri: Cold Hardiness and Temperature Thresholds for Oviposition

    PubMed Central

    Hall, David G.; Wenninger, Erik J.; Hentz, Matthew G.

    2011-01-01

    This study was conducted to obtain information on the cold hardiness of the Asian citrus psyllid, Diaphorina citri Kuwayama (Hemiptera: Psyllidae), in Florida and to assess upper and lower temperature thresholds for oviposition. The psyllid is an important pest in citrus because it transmits the bacterial pathogens responsible for citrus greening disease, Huanglongbing, considered the most serious citrus disease worldwide. D. citri was first found in Florida during 1998, and the disease was discovered during 2005. Little was known regarding cold hardiness of D. citri, but Florida citrus is occasionally subjected to notable freeze events. Temperature and duration were each significant sources of variation in percent mortality of D. citri subjected to freeze events. Relatively large percentages of adults and nymphs survived after being exposed for several hours to temperatures as low as -5 to -6° C. Relatively large percentages of eggs hatched after being exposed for several hours to temperatures as low as -8° C. Research results indicated that adult D. citri become cold acclimated during the winter through exposure to cooler winter temperatures. There was no evidence that eggs became cold acclimated during winter. Cold acclimation in nymphs was not investigated. Research with adult D. citri from laboratory and greenhouse colonies revealed that mild to moderate freeze events were usually nonlethal to the D. citri irrespective of whether they were cold acclimated or not. Upper and lower temperature thresholds for oviposition were investigated because such information may be valuable in explaining the geographic distribution and potential spread of the pest from Florida as well as how cooler winter temperatures might limit population growth. The estimated lower and upper thresholds for oviposition were 16.0 and 41.6° C, respectively; the estimated temperature of peak oviposition over a 48 h period was 29.6° C. PMID:21870969

  1. Logic programming and metadata specifications

    NASA Technical Reports Server (NTRS)

    Lopez, Antonio M., Jr.; Saacks, Marguerite E.

    1992-01-01

    Artificial intelligence (AI) ideas and techniques are critical to the development of intelligent information systems that will be used to collect, manipulate, and retrieve the vast amounts of space data produced by 'Missions to Planet Earth.' Natural language processing, inference, and expert systems are at the core of this space application of AI. This paper presents logic programming as an AI tool that can support inference (the ability to draw conclusions from a set of complicated and interrelated facts). It reports on the use of logic programming in the study of metadata specifications for a small problem domain of airborne sensors, and the dataset characteristics and pointers that are needed for data access.

  2. Detection and damage assessment of citrus tree losses with aerial color infrared photography /ACIR/

    NASA Technical Reports Server (NTRS)

    Blazquez, C. H.; Horn, F. W., Jr.; Edwards, G. J.

    1981-01-01

    Detection and disease damage assessment of citrus tree losses in a Florida citrus grove were made by establishing a registration (grove site location) coordinate system, developing a damage assessment system, and testing sequential aerial color infrared (ACIR) photography at the scale of 1 in. = 333 ft (2.5 cm = 100 m) during the winter, spring, and summer seasons of 1978 and spring of 1979. Spring photography was the easiest to photo interpret, showed the greatest differences between healthy and diseased trees, and had the least shadow and background interference for photo interpretation. Trees showing slight disease damage were detected in ACIR before they were found in ground surveys.

  3. Wetlands: Crop freezes and land-use change in Florida

    USGS Publications Warehouse

    Marshall, C.H.; Pielke, R.A.; Steyaert, L.T.

    2003-01-01

    South Florida experienced a significant change in land usage during the twentieth century, including the conversion of natural wetlands into agricultural land for the cultivation of winter vegetable, sugar cane and citrus crops. This movement of agriculture from more northerly areas was intended partly to escape the risk of damaging winter freezes. Here we present evidence from a case study using a coupled atmosphere and land-surface computer-modelling system that suggests that the draining of wetlands may have inadvertently increased the frequency and severity of agriculturally damaging freezes in the south of Florida.

  4. Florida Everglades

    NASA Technical Reports Server (NTRS)

    2002-01-01

    Spanning the southern tip of the Florida Peninsula and most of Florida Bay, Everglades National Park is the only subtropical preserve in North America. It contains both temperate and tropical plant communities, including sawgrass prairie, mangrove and cypress swamps, pinelands, and hardwood hammocks, as well as marine and estuarine environments. The park is known for its rich bird life, particularly large wading birds, such as the roseate spoonbill, wood stork, great blue heron, and a variety of egrets. It is also the only place in the world where alligators and crocodiles exist side by side. This image was acquired by Landsat 7's Enhanced Thematic Mapper plus (ETM+) sensor on May 2, 2000. This is a false-color composite image made using shortwave infrared, near infrared, and green wavelengths. The image has also been sharpened using the sensor's panchromatic band. Image provided by the USGS EROS Data Center Satellite Systems Branch

  5. A Metadata Element Set for Project Documentation

    NASA Technical Reports Server (NTRS)

    Hodge, Gail; Templeton, Clay; Allen, Robert B.

    2003-01-01

    Abstract NASA Goddard Space Flight Center is a large engineering enterprise with many projects. We describe our efforts to develop standard metadata sets across project documentation which we term the "Goddard Core". We also address broader issues for project management metadata.

  6. Some Observations on Metadata and Digital Libraries.

    ERIC Educational Resources Information Center

    Arms, Caroline R.

    This paper describes experiences in gathering together metadata from heterogeneous sources for the American Memory project of the Library of Congress, particularly for the collections digitized and cataloged at other institutions. It also reflects on several initiatives to develop rich structured metadata schemes for specific domains and to find…

  7. A Metadata-Rich File System

    SciTech Connect

    Ames, S; Gokhale, M B; Maltzahn, C

    2009-01-07

    Despite continual improvements in the performance and reliability of large scale file systems, the management of file system metadata has changed little in the past decade. The mismatch between the size and complexity of large scale data stores and their ability to organize and query their metadata has led to a de facto standard in which raw data is stored in traditional file systems, while related, application-specific metadata is stored in relational databases. This separation of data and metadata requires considerable effort to maintain consistency and can result in complex, slow, and inflexible system operation. To address these problems, we have developed the Quasar File System (QFS), a metadata-rich file system in which files, metadata, and file relationships are all first class objects. In contrast to hierarchical file systems and relational databases, QFS defines a graph data model composed of files and their relationships. QFS includes Quasar, an XPATH-extended query language for searching the file system. Results from our QFS prototype show the effectiveness of this approach. Compared to the defacto standard, the QFS prototype shows superior ingest performance and comparable query performance on user metadata-intensive operations and superior performance on normal file metadata operations.

  8. CanCore: Metadata for Learning Objects.

    ERIC Educational Resources Information Center

    Friesen, Norm; Roberts, Anthony; Fisher, Sue

    2002-01-01

    Discusses reusable digital learning resources or objects in distance education and training. Focuses on the pivotal role of metadata and issues relating to classification, description, and meaning, specifically issues of semantics; and describes the CanCore Learning Object Metadata Application Profile. (Author/LRW)

  9. Centralized FITS Metadata Handling Framework at ESO

    NASA Astrophysics Data System (ADS)

    Vera, I.; Dobrzycki, A.; Vuong, M.-H.; Brion, A.

    2011-07-01

    The European Organization for Astronomical Research in the Southern Hemisphere (ESO) headquartered in Garching, Germany, operates three state-of-the-art observatories in Chile: at La Silla, Paranal and Chajnantor. The observatories produce huge amounts of data, which are transferred to the ESO headquarters and stored in the ESO Archive. The archive also stores the products generated by pipeline processing of raw data by the ESO Quality Control (QC) group. In addition, the Archive also stores science products delivered by the principal investigators. Historically, these three processes were independent from one another which resulted in different metadata handling frameworks for each kind of product. This architecture led to duplicate efforts for building metadata-based services as well as creating challenging scenarios for integrating metadata from different processes. We present the metadata handling framework recently implemented at the European Southern Observatory, in which all metadata from FITS compliant sources are stored in a centralized repository database. The framework allows building metadata-based services in a descriptive way, transparently propagating any modifications/updates performed in the central repository. In addition, through a set of common functions, the framework allows for enrichment of FITS-based metadata with derived values and/or with metadata from other ESO operational databases.

  10. International Metadata Initiatives: Lessons in Bibliographic Control.

    ERIC Educational Resources Information Center

    Caplan, Priscilla

    This paper looks at a subset of metadata schemes, including the Text Encoding Initiative (TEI) header, the Encoded Archival Description (EAD), the Dublin Core Metadata Element Set (DCMES), and the Visual Resources Association (VRA) Core Categories for visual resources. It examines why they developed as they did, major point of difference from…

  11. Leveraging Metadata to Create Better Web Services

    ERIC Educational Resources Information Center

    Mitchell, Erik

    2012-01-01

    Libraries have been increasingly concerned with data creation, management, and publication. This increase is partly driven by shifting metadata standards in libraries and partly by the growth of data and metadata repositories being managed by libraries. In order to manage these data sets, libraries are looking for new preservation and discovery…

  12. Integrated Array/Metadata Analytics

    NASA Astrophysics Data System (ADS)

    Misev, Dimitar; Baumann, Peter

    2015-04-01

    Data comes in various forms and types, and integration usually presents a problem that is often simply ignored and solved with ad-hoc solutions. Multidimensional arrays are an ubiquitous data type, that we find at the core of virtually all science and engineering domains, as sensor, model, image, statistics data. Naturally, arrays are richly described by and intertwined with additional metadata (alphanumeric relational data, XML, JSON, etc). Database systems, however, a fundamental building block of what we call "Big Data", lack adequate support for modelling and expressing these array data/metadata relationships. Array analytics is hence quite primitive or non-existent at all in modern relational DBMS. Recognizing this, we extended SQL with a new SQL/MDA part seamlessly integrating multidimensional array analytics into the standard database query language. We demonstrate the benefits of SQL/MDA with real-world examples executed in ASQLDB, an open-source mediator system based on HSQLDB and rasdaman, that already implements SQL/MDA.

  13. Mini Ontologies and Metadata Expressions

    NASA Astrophysics Data System (ADS)

    King, T. A.; Ritschel, B.

    2013-12-01

    Ontologies come in many forms and with a wide range of detail and specificity. Of particular interest in the realm of science are classification schemes or taxonomies. Within general science domains there may be multiple taxonomies. Each taxonomy can be represented as a very narrowly defined domain ontology. We call such ontologies "mini ontologies". Since mini ontologies are very modular and portable they can be used in a variety of context. To illustrate the generation and use of mini ontologies we show how enumerations which may part of an existing data model, like SPASE *Region enumerations, can be modeled as a mini ontology. We show how such ontologies can be transformed to generate metadata expressions which can be readily used in different operational context, for example in the tag of a web page. We define a set of context specific transforms for commonly used metadata expressions which can preserve the semantic information in a mini ontology and describe how such expressions are reversible. The sharing and adoption of mini ontologies can significantly enhance the discovery and use of related data resources within a community. We look at several cases where this is true with a special focus on the international ESPAS project.

  14. Formulating a natural colorant containing wax for a one-step color-add application for fresh citrus

    Technology Transfer Automated Retrieval System (TEKTRAN)

    In Florida, early season citrus fruits usually reach full maturity in terms of internal quality while their peel often does not turn orange in color after degreening due to insufficient buildup of carotenoids. For huanglongbing-affected orange trees, the fruit may never turn orange the entire harves...

  15. Formulating a natural colorant containing wax for a one-step color-add application for fresh citrus

    Technology Transfer Automated Retrieval System (TEKTRAN)

    In Florida, the early season fruits such as ‘Parson Brown’ and ‘Hamlin’ reach full maturity in terms of internal quality during early fall, but their peel are often still green due to the lack of cold nights needed to turn the fruit orange. The improvement of citrus peel color to better meet consume...

  16. Observations on the entomopathogenic fungus Hirsutella citriformis attacking adult Diaphorina citri (Hemiptera: Psyllid) in a managed citrus grove

    Technology Transfer Automated Retrieval System (TEKTRAN)

    A two-year field study was conducted in an orange grove (0.7 ha) in Florida to characterize the phenology of the entomopathogen Hirsutella citriformis Speare infecting adults of the Asian citrus psyllid, Diaphorina citri Kuwayama. On the average over the two-year study, 23 percent of adults observed...

  17. Candidatus Liberibacter asiaticus is present in orange jasmine and Asian citrus psyllid reared from jasmine at low titers

    Technology Transfer Automated Retrieval System (TEKTRAN)

    Orange jasmine, Murraya paniculata, is a common horticultural plant in Florida, and an alternate host of the Asian citrus psyllid, Diaphorina citri Kuwayama. Orange jasmine has also been reported to harbor the bacteria Candidatus Liberibacter asiaticus, the causal agent of huanglongbing disease. We ...

  18. Hydrogen cyanamide on citrus: preliminary data on phytotoxicity and influence on flush in potted and field trees

    Technology Transfer Automated Retrieval System (TEKTRAN)

    Bloom in individual citrus trees typically continues for more than a month in south Florida, with even greater bloom duration within most orchard blocks because of variation in bloom timing between trees. Prolonged bloom contributes to variable fruit maturity as harvest approaches and increases seve...

  19. Under severe HLB and citrus canker pressure, 'Triumph' and 'Jackson' perform better than 'Flame' and 'Marsh' grapefruit

    Technology Transfer Automated Retrieval System (TEKTRAN)

    Huanglongbing (HLB) and Citrus Canker (CC) threaten the viability of Florida grapefruit production. ‘Triumph’ (T), reportedly a grapefruit/sweet orange hybrid, is similar to seedy white grapefruit with earlier maturity and lower bitterness. ‘Jackson’ (J) is a low-seeded budsport of ‘Triumph’. Tree h...

  20. Under severe citrus canker and HLB (Huanglongbing) pressure, Triumph and Jackson perform better than Flame and Marsh grapefruit

    Technology Transfer Automated Retrieval System (TEKTRAN)

    Huanglongbing (HLB) and Citrus Canker (CC) threaten the viability of Florida grapefruit production. Triumph (T), reportedly a grapefruit/sweet orange hybrid, is similar to seedy white grapefruit with earlier maturity and lower bitterness. Jackson (J) is a low-seeded budsport of Triumph. Tree health ...

  1. Performance of 'Valencia' Orange (Citrus sinensis [L.] Osbeck) on 17 rootstocks in a trial severely affected by huanglongbing

    Technology Transfer Automated Retrieval System (TEKTRAN)

    Valencia orange (Citrus sinensis L. Osbeck) was grown on 17 rootstocks through seven years of age and the first four harvest seasons in a central Florida field trial severely affected by huanglongbing (HLB) disease. All trees in the trial had huanglongbing symptoms and were shown by Polymerase chain...

  2. METADATA REGISTRY, ISO/IEC 11179

    SciTech Connect

    Pon, R K; Buttler, D J

    2008-01-03

    ISO/IEC-11179 is an international standard that documents the standardization and registration of metadata to make data understandable and shareable. This standardization and registration allows for easier locating, retrieving, and transmitting data from disparate databases. The standard defines the how metadata are conceptually modeled and how they are shared among parties, but does not define how data is physically represented as bits and bytes. The standard consists of six parts. Part 1 provides a high-level overview of the standard and defines the basic element of a metadata registry - a data element. Part 2 defines the procedures for registering classification schemes and classifying administered items in a metadata registry (MDR). Part 3 specifies the structure of an MDR. Part 4 specifies requirements and recommendations for constructing definitions for data and metadata. Part 5 defines how administered items are named and identified. Part 6 defines how administered items are registered and assigned an identifier.

  3. Incorporating ISO Metadata Using HDF Product Designer

    NASA Technical Reports Server (NTRS)

    Jelenak, Aleksandar; Kozimor, John; Habermann, Ted

    2016-01-01

    The need to store in HDF5 files increasing amounts of metadata of various complexity is greatly overcoming the capabilities of the Earth science metadata conventions currently in use. Data producers until now did not have much choice but to come up with ad hoc solutions to this challenge. Such solutions, in turn, pose a wide range of issues for data managers, distributors, and, ultimately, data users. The HDF Group is experimenting on a novel approach of using ISO 19115 metadata objects as a catch-all container for all the metadata that cannot be fitted into the current Earth science data conventions. This presentation will showcase how the HDF Product Designer software can be utilized to help data producers include various ISO metadata objects in their products.

  4. Collection Metadata Solutions for Digital Library Applications

    NASA Technical Reports Server (NTRS)

    Hill, Linda L.; Janee, Greg; Dolin, Ron; Frew, James; Larsgaard, Mary

    1999-01-01

    Within a digital library, collections may range from an ad hoc set of objects that serve a temporary purpose to established library collections intended to persist through time. The objects in these collections vary widely, from library and data center holdings to pointers to real-world objects, such as geographic places, and the various metadata schemas that describe them. The key to integrated use of such a variety of collections in a digital library is collection metadata that represents the inherent and contextual characteristics of a collection. The Alexandria Digital Library (ADL) Project has designed and implemented collection metadata for several purposes: in XML form, the collection metadata "registers" the collection with the user interface client; in HTML form, it is used for user documentation; eventually, it will be used to describe the collection to network search agents; and it is used for internal collection management, including mapping the object metadata attributes to the common search parameters of the system.

  5. 7 CFR 301.76-2 - Regulated articles for Asian citrus psyllid and citrus greening.

    Code of Federal Regulations, 2014 CFR

    2014-01-01

    ... 7 Agriculture 5 2014-01-01 2014-01-01 false Regulated articles for Asian citrus psyllid and citrus...) ANIMAL AND PLANT HEALTH INSPECTION SERVICE, DEPARTMENT OF AGRICULTURE DOMESTIC QUARANTINE NOTICES Citrus Greening and Asian Citrus Psyllid § 301.76-2 Regulated articles for Asian citrus psyllid and...

  6. 7 CFR 301.76-2 - Regulated articles for Asian citrus psyllid and citrus greening.

    Code of Federal Regulations, 2013 CFR

    2013-01-01

    ... 7 Agriculture 5 2013-01-01 2013-01-01 false Regulated articles for Asian citrus psyllid and citrus...) ANIMAL AND PLANT HEALTH INSPECTION SERVICE, DEPARTMENT OF AGRICULTURE DOMESTIC QUARANTINE NOTICES Citrus Greening and Asian Citrus Psyllid § 301.76-2 Regulated articles for Asian citrus psyllid and...

  7. 7 CFR 301.76-2 - Regulated articles for Asian citrus psyllid and citrus greening.

    Code of Federal Regulations, 2012 CFR

    2012-01-01

    ... 7 Agriculture 5 2012-01-01 2012-01-01 false Regulated articles for Asian citrus psyllid and citrus...) ANIMAL AND PLANT HEALTH INSPECTION SERVICE, DEPARTMENT OF AGRICULTURE DOMESTIC QUARANTINE NOTICES Citrus Greening and Asian Citrus Psyllid § 301.76-2 Regulated articles for Asian citrus psyllid and...

  8. Agreement: Citrus College Faculty Association and Citrus Community College District.

    ERIC Educational Resources Information Center

    Citrus Community Coll. District, Glendora, CA.

    The collective bargaining agreement between the Citrus Community College District Board of Trustees and the Citrus College Faculty/California Teachers Association/National Education Association is presented. This contract, covering the period from July 1988 through June 1990, deals with the following topics: bargaining agent recognition and…

  9. Citrus Huanglongbing tolerance in Australian Citrus Relatives, Microcitrus and Eremocirus

    Technology Transfer Automated Retrieval System (TEKTRAN)

    Tolerance, or resistance to citrus huanglongbing will be important as a long term solution for this disease. In a field trial conducted with over 1000 plants belonging to different genera in the sub-family Aurantioideae, we observed field tolerance in many Australian citrus relatives. To confirm the...

  10. Hydrologic conditions in the Lakeland Ridge area of Polk County, Florida

    USGS Publications Warehouse

    Robertson, Alton F.

    1973-01-01

    The Lakeland ridge area of this investigation covers about 300 square miles in northwest Polk County in central Florida. The growth of industry, phosphate mining, and citrus production as well as population growth during the last two decades has resulted in an increase in ground-water pumpage from about 11 billion gallons in 1950 to 27 billion gallons in 1970.

  11. Spatio-temporal analysis of an HLB epidemic in Florida and implications for spread.

    Technology Transfer Automated Retrieval System (TEKTRAN)

    Data for Huanglongbing (HLB) epidemics was collected during 5 assessment dates over a 2-year period from 11, 4-ha commercial citrus blocks in Florida. Data were analyzed for regional spatial characteristics via Ripley’s K analyses. Data were fitted to the logistic and Gompertz temporal models, the...

  12. Internet experiments: methods, guidelines, metadata

    NASA Astrophysics Data System (ADS)

    Reips, Ulf-Dietrich

    2009-02-01

    The Internet experiment is now a well-established and widely used method. The present paper describes guidelines for the proper conduct of Internet experiments, e.g. handling of dropout, unobtrusive naming of materials, and pre-testing. Several methods are presented that further increase the quality of Internet experiments and help to avoid frequent errors. These methods include the "seriousness check", "warm-up," "high hurdle," and "multiple site entry" techniques, control of multiple submissions, and control of motivational confounding. Finally, metadata from sites like WEXTOR (http://wextor.org) and the web experiment list (http://genpsylab-wexlist.uzh.ch/) are reported that show the current state of Internet-based research in terms of the distribution of fields, topics, and research designs used.

  13. Handling Metadata in a Neurophysiology Laboratory

    PubMed Central

    Zehl, Lyuba; Jaillet, Florent; Stoewer, Adrian; Grewe, Jan; Sobolev, Andrey; Wachtler, Thomas; Brochier, Thomas G.; Riehle, Alexa; Denker, Michael; Grün, Sonja

    2016-01-01

    To date, non-reproducibility of neurophysiological research is a matter of intense discussion in the scientific community. A crucial component to enhance reproducibility is to comprehensively collect and store metadata, that is, all information about the experiment, the data, and the applied preprocessing steps on the data, such that they can be accessed and shared in a consistent and simple manner. However, the complexity of experiments, the highly specialized analysis workflows and a lack of knowledge on how to make use of supporting software tools often overburden researchers to perform such a detailed documentation. For this reason, the collected metadata are often incomplete, incomprehensible for outsiders or ambiguous. Based on our research experience in dealing with diverse datasets, we here provide conceptual and technical guidance to overcome the challenges associated with the collection, organization, and storage of metadata in a neurophysiology laboratory. Through the concrete example of managing the metadata of a complex experiment that yields multi-channel recordings from monkeys performing a behavioral motor task, we practically demonstrate the implementation of these approaches and solutions with the intention that they may be generalized to other projects. Moreover, we detail five use cases that demonstrate the resulting benefits of constructing a well-organized metadata collection when processing or analyzing the recorded data, in particular when these are shared between laboratories in a modern scientific collaboration. Finally, we suggest an adaptable workflow to accumulate, structure and store metadata from different sources using, by way of example, the odML metadata framework. PMID:27486397

  14. Handling Metadata in a Neurophysiology Laboratory.

    PubMed

    Zehl, Lyuba; Jaillet, Florent; Stoewer, Adrian; Grewe, Jan; Sobolev, Andrey; Wachtler, Thomas; Brochier, Thomas G; Riehle, Alexa; Denker, Michael; Grün, Sonja

    2016-01-01

    To date, non-reproducibility of neurophysiological research is a matter of intense discussion in the scientific community. A crucial component to enhance reproducibility is to comprehensively collect and store metadata, that is, all information about the experiment, the data, and the applied preprocessing steps on the data, such that they can be accessed and shared in a consistent and simple manner. However, the complexity of experiments, the highly specialized analysis workflows and a lack of knowledge on how to make use of supporting software tools often overburden researchers to perform such a detailed documentation. For this reason, the collected metadata are often incomplete, incomprehensible for outsiders or ambiguous. Based on our research experience in dealing with diverse datasets, we here provide conceptual and technical guidance to overcome the challenges associated with the collection, organization, and storage of metadata in a neurophysiology laboratory. Through the concrete example of managing the metadata of a complex experiment that yields multi-channel recordings from monkeys performing a behavioral motor task, we practically demonstrate the implementation of these approaches and solutions with the intention that they may be generalized to other projects. Moreover, we detail five use cases that demonstrate the resulting benefits of constructing a well-organized metadata collection when processing or analyzing the recorded data, in particular when these are shared between laboratories in a modern scientific collaboration. Finally, we suggest an adaptable workflow to accumulate, structure and store metadata from different sources using, by way of example, the odML metadata framework.

  15. The potential for citrus cryotherapy

    Technology Transfer Automated Retrieval System (TEKTRAN)

    Citrus collections of pathogen-free plants are needed for breeding, research, and distribution to the user community. The Citrus Research Board funded research project “Development of cryotherapy as an improved method of eliminating graft transmissible pathogens in Citrus” sought to use cryotherapy,...

  16. Widespread applications of citrus cryopreservation

    Technology Transfer Automated Retrieval System (TEKTRAN)

    Citrus genetic resources can now be successfully cryopreserved, which means that they can be placed into long-term storage at liquid nitrogen temperatures. This cryopreservation technology was specifically developed to address the immediate need to have secure long-term back-up storage for citrus co...

  17. Integrated Management of Citrus Canker

    Technology Transfer Automated Retrieval System (TEKTRAN)

    Fruit losses due to citrus canker, caused by Xanthomonas citri subsp. citri (Xcc), vary each crop season depending on citrus variety, tree age, flushing condition, leafminer control, and coincidence of weather events with occurrence of susceptible fruit and foliage. In 2012, crop losses in Hamlin f...

  18. The flavor of citrus fruit

    Technology Transfer Automated Retrieval System (TEKTRAN)

    Citrus is the largest cultivated fruit tree crop in the world, with total production of more than 100 million tons per year. The genus Citrus consists of different species, including several producing economically important crops, such as oranges, mandarins, grapefruit, pummelo, lemons and limes, c...

  19. Evaluating and Evolving Metadata in Multiple Dialects

    NASA Technical Reports Server (NTRS)

    Kozimore, John; Habermann, Ted; Gordon, Sean; Powers, Lindsay

    2016-01-01

    Despite many long-term homogenization efforts, communities continue to develop focused metadata standards along with related recommendations and (typically) XML representations (aka dialects) for sharing metadata content. Different representations easily become obstacles to sharing information because each representation generally requires a set of tools and skills that are designed, built, and maintained specifically for that representation. In contrast, community recommendations are generally described, at least initially, at a more conceptual level and are more easily shared. For example, most communities agree that dataset titles should be included in metadata records although they write the titles in different ways.

  20. Assessing Metadata Quality of a Federally Sponsored Health Data Repository.

    PubMed

    Marc, David T; Beattie, James; Herasevich, Vitaly; Gatewood, Laël; Zhang, Rui

    2016-01-01

    The U.S. Federal Government developed HealthData.gov to disseminate healthcare datasets to the public. Metadata is provided for each datasets and is the sole source of information to find and retrieve data. This study employed automated quality assessments of the HealthData.gov metadata published from 2012 to 2014 to measure completeness, accuracy, and consistency of applying standards. The results demonstrated that metadata published in earlier years had lower completeness, accuracy, and consistency. Also, metadata that underwent modifications following their original creation were of higher quality. HealthData.gov did not uniformly apply Dublin Core Metadata Initiative to the metadata, which is a widely accepted metadata standard. These findings suggested that the HealthData.gov metadata suffered from quality issues, particularly related to information that wasn't frequently updated. The results supported the need for policies to standardize metadata and contributed to the development of automated measures of metadata quality.

  1. Assessing Metadata Quality of a Federally Sponsored Health Data Repository

    PubMed Central

    Marc, David T.; Beattie, James; Herasevich, Vitaly; Gatewood, Laël; Zhang, Rui

    2016-01-01

    The U.S. Federal Government developed HealthData.gov to disseminate healthcare datasets to the public. Metadata is provided for each datasets and is the sole source of information to find and retrieve data. This study employed automated quality assessments of the HealthData.gov metadata published from 2012 to 2014 to measure completeness, accuracy, and consistency of applying standards. The results demonstrated that metadata published in earlier years had lower completeness, accuracy, and consistency. Also, metadata that underwent modifications following their original creation were of higher quality. HealthData.gov did not uniformly apply Dublin Core Metadata Initiative to the metadata, which is a widely accepted metadata standard. These findings suggested that the HealthData.gov metadata suffered from quality issues, particularly related to information that wasn’t frequently updated. The results supported the need for policies to standardize metadata and contributed to the development of automated measures of metadata quality. PMID:28269883

  2. Incidence of Candidatus Liberibacter asiaticus infection in abandoned citrus occurring in proximity to commercially managed groves.

    PubMed

    Tiwari, Siddharth; Lewis-Rosenblum, Hannah; Pelz-Stelinski, Kirsten; Stelinski, Lukasz L

    2010-12-01

    Huanglongbing is one of the most devastating diseases of citrus (Citrus spp.). One management tactic against huanglongbing is aggressive management of the vector, the Asian citrus psyllid (Diaphorina citri Kuwayama), with insecticide applications. However, D. citri in abandoned groves are not controlled and therefore pose a risk of reinfestation for nearby commercial citrus. These abandoned groves could serve as a reservoir for the vector, as well as a source of the presumed causal agent for huanglongbing in Florida, Candidatus Liberibacter asiaticus (Las). The current study was conducted to determine the degree to which Las is present in abandoned Florida citrus groves and to compare relative inoculum levels in nearby managed and abandoned groves during times of the year when D. citri are abundant (June, July, and August). In addition, the movement of Las by dispersing D. citri adults from inner and edge rows of abandoned grove plots to the corresponding rows of managed plots was quantified during the same 3 mo. The results of the current study confirmed the presence of Las in both D. citri and plant tissue in abandoned groves at statistically equivalent levels to those in nearby managed groves. The mean number of D. citri adults dispersing from abandoned to managed grove plots ranged from 7.25 +/- 1.70 to 70.25 +/- 21.25 per 4-d intervals. Of those, the mean number of dispersing D. citri adults that were carrying the Las pathogen ranged from 1.00 +/- 0.58 to 1.50 +/- 0.50. Our results indicate that abandoned citrus groves are a significant source of Ca. Las and that dispersing D. citri move this pathogen into nearby managed groves.

  3. Metadata extraction routines for improving infobutton performance.

    PubMed

    Hulse, Nathan C; Haug, Peter J

    2010-11-13

    Infobuttons have been proven as an effective means for providing quick, context-specific links to pertinent information resources at the point of care. Current infobutton manager implementations, however, lack the ability to exchange metadata, are limited to a relatively small set of information providers, and are targeted primarily for a clinician audience. As part of a local effort to implement infobuttons for patient use via a tethered personal health record, we present a series of metadata extraction routines. These routines were constructed to extract key pieces of information from health information providers on the Internet, including content coverage, language availability, and readability scores. The extraction routines were tested using thirty different disease conditions against eight different providers. The routines yielded 183 potential infobutton targets and associated metadata for each. The capabilities of the extraction routines will be expanded to cover new types of metadata in the future.

  4. eXtended MetaData Registry

    SciTech Connect

    2006-10-25

    The purpose of the eXtended MetaData Registry (XMDR) prototype is to demonstrate the feasibility and utility of constructing an extended metadata registry, i.e., one which encompasses richer classification support, facilities for including terminologies, and better support for formal specification of semantics. The prototype registry will also serve as a reference implementation for the revised versions of ISO 11179, Parts 2 and 3 to help guide production implementations.

  5. An Approach to Information Management for AIR7000 with Metadata and Ontologies

    DTIC Science & Technology

    2009-10-01

    DDMS (US DoD) . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . 23 6.3 Dublin Core Metadata Initiative ( DCMI ...Organisation Data Management MetaData Profile DCMI Dublin Core Metadata Initiative DDMS DoD Discovery Metadata Specification DIE Defence Information...important metadata standards (explored in more detail later) are the Dublin Core Metadata Initiative ( DCMI ) and the DoDDiscoveryMetadata Specification

  6. Science friction: data, metadata, and collaboration.

    PubMed

    Edwards, Paul N; Mayernik, Matthew S; Batcheller, Archer L; Bowker, Geoffrey C; Borgman, Christine L

    2011-10-01

    When scientists from two or more disciplines work together on related problems, they often face what we call 'science friction'. As science becomes more data-driven, collaborative, and interdisciplinary, demand increases for interoperability among data, tools, and services. Metadata--usually viewed simply as 'data about data', describing objects such as books, journal articles, or datasets--serve key roles in interoperability. Yet we find that metadata may be a source of friction between scientific collaborators, impeding data sharing. We propose an alternative view of metadata, focusing on its role in an ephemeral process of scientific communication, rather than as an enduring outcome or product. We report examples of highly useful, yet ad hoc, incomplete, loosely structured, and mutable, descriptions of data found in our ethnographic studies of several large projects in the environmental sciences. Based on this evidence, we argue that while metadata products can be powerful resources, usually they must be supplemented with metadata processes. Metadata-as-process suggests the very large role of the ad hoc, the incomplete, and the unfinished in everyday scientific work.

  7. What Metadata Principles Apply to Scientific Data?

    NASA Astrophysics Data System (ADS)

    Mayernik, M. S.

    2014-12-01

    Information researchers and professionals based in the library and information science fields often approach their work through developing and applying defined sets of principles. For example, for over 100 years, the evolution of library cataloging practice has largely been driven by debates (which are still ongoing) about the fundamental principles of cataloging and how those principles should manifest in rules for cataloging. Similarly, the development of archival research and practices over the past century has proceeded hand-in-hand with the emergence of principles of archival arrangement and description, such as maintaining the original order of records and documenting provenance. This project examines principles related to the creation of metadata for scientific data. The presentation will outline: 1) how understandings and implementations of metadata can range broadly depending on the institutional context, and 2) how metadata principles developed by the library and information science community might apply to metadata developments for scientific data. The development and formalization of such principles would contribute to the development of metadata practices and standards in a wide range of institutions, including data repositories, libraries, and research centers. Shared metadata principles would potentially be useful in streamlining data discovery and integration, and would also benefit the growing efforts to formalize data curation education.

  8. Beginning Eleventh Grade Student Profile, Mathematics Standards, Citrus County, Florida.

    ERIC Educational Resources Information Center

    Citrus County Board of Public Instruction, Inverness, FL.

    This collection of booklets deals with minumum standards in mathematics for beginning eleventh grade students. There is a statement of the standards with related skills, a test to assess competency with accompanying answer sheet and answer key, and eight booklets presenting problems covered by six of the standards. The booklets cover: percentages;…

  9. Fortuitous establishment of Ageniaspis citricola (Hymenoptera: Encyrtidae) in Jamaica on the citrus leafminer (Lepidoptera: Gracillariidae)

    SciTech Connect

    Hoy, M.A.; Jeyaprakash, A.; Clarke-Harris, D.

    2007-03-15

    These data indicate that the population of A. citricola in Jamaica probably originated from the Australian (Thailand), rather than from the Taiwan, population. This is consistent with what is currently known about the origin of the established Ageniaspis population in Florida (Alvarez 2000). It is not known when, or how, A. citricola arrived in Jamaica, although the CLM was detected there in 1994. The fortuitous establishment of A. citricolaon the CLM in Jamaica is not the only such establishment of a natural enemy discovered during this 2004 survey of citrus. The parasitoid Lipolexis oregmae Gahan (Hymenoptera: Aphidiidae) was found attacking the brown citrus aphid, Toxoptera citricida Kirkaldy (Hemiptera: Aphididae) (Hoy et al., unpublished data), and the eulophid parasitoid Tamarixia radiata Waterston was found attacking the Asian citrus psyllid, Diaphorina citri Kuwayama (Hemiptera: Psyllidae). The fact that 3 natural enemies of 3 invasive citrus pests were found in Jamaica, none of which were purposefully imported and released, suggests that pest-infested citrus trees were imported into Jamaica without going through appropriate quarantine procedures. Because each pest arrived at different times, the parasitoids probably arrived at different times, as well. This indicates that an analysis is needed to identify the critical control points within those services in Jamaica that support border protection, and that procedures may require strengthening. (author)

  10. Streamlining geospatial metadata in the Semantic Web

    NASA Astrophysics Data System (ADS)

    Fugazza, Cristiano; Pepe, Monica; Oggioni, Alessandro; Tagliolato, Paolo; Carrara, Paola

    2016-04-01

    In the geospatial realm, data annotation and discovery rely on a number of ad-hoc formats and protocols. These have been created to enable domain-specific use cases generalized search is not feasible for. Metadata are at the heart of the discovery process and nevertheless they are often neglected or encoded in formats that either are not aimed at efficient retrieval of resources or are plainly outdated. Particularly, the quantum leap represented by the Linked Open Data (LOD) movement did not induce so far a consistent, interlinked baseline in the geospatial domain. In a nutshell, datasets, scientific literature related to them, and ultimately the researchers behind these products are only loosely connected; the corresponding metadata intelligible only to humans, duplicated on different systems, seldom consistently. Instead, our workflow for metadata management envisages i) editing via customizable web- based forms, ii) encoding of records in any XML application profile, iii) translation into RDF (involving the semantic lift of metadata records), and finally iv) storage of the metadata as RDF and back-translation into the original XML format with added semantics-aware features. Phase iii) hinges on relating resource metadata to RDF data structures that represent keywords from code lists and controlled vocabularies, toponyms, researchers, institutes, and virtually any description one can retrieve (or directly publish) in the LOD Cloud. In the context of a distributed Spatial Data Infrastructure (SDI) built on free and open-source software, we detail phases iii) and iv) of our workflow for the semantics-aware management of geospatial metadata.

  11. Analysis of Nonpoint-Source Ground-Water Contamination in Relation to Land Use: Assessment of Nonpoint-Source Contamination in Central Florida

    USGS Publications Warehouse

    German, Edward R.

    1996-01-01

    In central Florida, activities that might affect the quality of ground water include disposal of stormwater through drainage wells, citrus cultivation, and mining and processing of phosphate ore. Possible effects of these and other land-use activities include high concentrations of nitrogen compounds and the pesticide bromacil in the citrus area, and high concentrations of most of the major-dissolved constituents and some organic compounds in the mining area.

  12. Mercury-metadata data management system

    SciTech Connect

    2008-01-03

    Mercury is a federated metadata harvesting, search and retrieval tool based on both open source software and software developed at Oak Ridge National Laboratory. It was originally developed for NASA, USGS, and DOE. A major new version of Mercury (version 3.0) was developed during 2007 and released in early 2008. This Mercury 3.0 version provides orders of magnitude improvements in search speed, support for additional metadata formats, integration with Google Maps for spatial queries, facetted type search, support for RSS delivery of search results, and ready customization to meet the needs of the multiple projects which use Mercury. For the end users, Mercury provides a single portal to very quickly search for data and information contained in disparate data management systems. It collects metadata and key data from contributing project servers distributed around the world and builds a centralized index. The Mercury search interfaces then allow the users to perform simple, fielded, spatial, and temporal searches across these metadata sources. This centralized repository of metadata with distributed data sources provides extremely fast search results to the user, while allowing data providers to advertise the availability of their data and maintain complete control and ownership of that data.

  13. Metadata aided run selection at ATLAS

    NASA Astrophysics Data System (ADS)

    Buckingham, R. M.; Gallas, E. J.; C-L Tseng, J.; Viegas, F.; Vinek, E.; ATLAS Collaboration

    2011-12-01

    Management of the large volume of data collected by any large scale scientific experiment requires the collection of coherent metadata quantities, which can be used by reconstruction or analysis programs and/or user interfaces, to pinpoint collections of data needed for specific purposes. In the ATLAS experiment at the LHC, we have collected metadata from systems storing non-event-wise data (Conditions) into a relational database. The Conditions metadata (COMA) database tables not only contain conditions known at the time of event recording, but also allow for the addition of conditions data collected as a result of later analysis of the data (such as improved measurements of beam conditions or assessments of data quality). A new web based interface called "runBrowser" makes these Conditions Metadata available as a Run based selection service. runBrowser, based on PHP and JavaScript, uses jQuery to present selection criteria and report results. It not only facilitates data selection by conditions attributes, but also gives the user information at each stage about the relationship between the conditions chosen and the remaining conditions criteria available. When a set of COMA selections are complete, runBrowser produces a human readable report as well as an XML file in a standardized ATLAS format. This XML can be saved for later use or refinement in a future runBrowser session, shared with physics/detector groups, or used as input to ELSSI (event level Metadata browser) or other ATLAS run or event processing services.

  14. Wind speed effects on the quantity of Xanthomonas citri subsp. citri dispersed downwind from canopies of grapefruit trees infected with citrus canker

    Technology Transfer Automated Retrieval System (TEKTRAN)

    The epidemic of citrus canker (Xanthomonas citri subsp. citri, Xcc) in Florida continues to expand since termination of the eradication program in 2006. Storms are known to be associated with disease spread, but little information exists on the interaction of fundamental physical and biological proc...

  15. Hydrogen cyanamide on citrus: Phytotoxicity, influences on flush in potted and field trees and effects on bloom and cropload in the field

    Technology Transfer Automated Retrieval System (TEKTRAN)

    Bloom in individual citrus trees typically continues for more than a month in south Florida. Prolonged bloom increases susceptibility to postbloom fruit drop disease (caused by Colletotrichum acutatum) and contributes to variable fruit maturity at harvest. Hydrogen cyanamide (HCN) is used to acceler...

  16. Applications of Genome-based Science in Shaping Citrus Industries of the World (JGI Seventh Annual User Meeting, 2012: Genomics of Energy and Environment)

    SciTech Connect

    Gmitter Jr, Fred

    2012-03-21

    Fred Gmitter from the University of Florida on "Applications of Genome-based Science in Shaping the Future of the World's Citrus Industries" at the 7th Annual Genomics of Energy & Environment Meeting on March 21, 2012 in Walnut Creek, California.

  17. Applications of Genome-based Science in Shaping Citrus Industries of the World (JGI Seventh Annual User Meeting, 2012: Genomics of Energy and Environment)

    ScienceCinema

    Gmitter Jr, Fred [University of Florida

    2016-07-12

    Fred Gmitter from the University of Florida on "Applications of Genome-based Science in Shaping the Future of the World's Citrus Industries" at the 7th Annual Genomics of Energy & Environment Meeting on March 21, 2012 in Walnut Creek, California.

  18. Past and future of a century old Citrus Tristeza virus collection: A California citrus germplasm tale

    Technology Transfer Automated Retrieval System (TEKTRAN)

    The California Citrus Clonal Protection Program (CCPP) provides a mechanism for introduction and distribution of pathogen-free citrus varieties to California for use in research, variety improvement, or commercial production. Citrus tristeza virus (CTV) is a serious citrus pathogen worldwide. The pr...

  19. Past and future of a century old Citrus Tristeza Virus collection: A California citrus germplasm tale

    Technology Transfer Automated Retrieval System (TEKTRAN)

    The California Citrus Clonal Protection Program (CCPP), Riverside, CA provides a mechanism for introduction and distribution of citrus germplasm from any citrus-growing area of the world to California for use in research, variety improvement, or by industry. Citrus tristeza virus (CTV) is a serious ...

  20. 78 FR 63369 - Citrus Canker, Citrus Greening, and Asian Citrus Psyllid; Interstate Movement of Regulated...

    Federal Register 2010, 2011, 2012, 2013, 2014

    2013-10-24

    ... and through this area. Regulated articles are plants and plant parts of all species, clones, cultivars, strains, varieties, or hybrids of the genera Citrus and Fortunella, and all clones, cultivars,...

  1. Florida Information Resource Network.

    ERIC Educational Resources Information Center

    Watson, Francis C.

    1986-01-01

    The Florida Information Resource Network (FIRN) is an effort by the Florida education community and the Florida Legislature to provide an electronic link among all agencies, institutions, and schools in the public education system. The communications link, perhaps one of the most advanced in the nation, has three purposes: (1) to provide equal…

  2. Omics Metadata Management Software v. 1 (OMMS)

    SciTech Connect

    2013-09-09

    Our application, the Omics Metadata Management Software (OMMS), answers both needs, empowering experimentalists to generate intuitive, consistent metadata, and to perform bioinformatics analyses and information management tasks via a simple and intuitive web-based interface. Several use cases with short-read sequence datasets are provided to showcase the full functionality of the OMMS, from metadata curation tasks, to bioinformatics analyses and results management and downloading. The OMMS can be implemented as a stand alone-package for individual laboratories, or can be configured for web-based deployment supporting geographically dispersed research teams. Our software was developed with open-source bundles, is flexible, extensible and easily installed and run by operators with general system administration and scripting language literacy.

  3. Control of virus diseases of citrus.

    PubMed

    Lee, Richard F

    2015-01-01

    Citrus is thought to have originated in Southeast Asia and horticulturally desirable clonal selections have been clonally cultivated for hundreds of years. While some citrus species have nucellar embryony, most cultivation of citrus has been by clonal propagation to ensure that propagated plants have the same traits as the parent selection. Clonal propagation also avoids juvenility, and the propagated plants produce fruit sooner. Because of the clonal propagation of citrus, citrus has accumulated a large number of viruses; many of these viruses are asymptomatic until a susceptible rootstock and/or scion is encountered. The viruses reported to occur in citrus will be summarized in this review. Methods of therapy to clean selected clones from viruses will be reviewed; the use of quarantine, clean stock, and certification programs for control of citrus viruses and other strategies to control insect spread citrus viruses, such as mild strain cross-protection and the use of pest management areas will be discussed.

  4. Mangos of Florida, country contribution: Florida

    Technology Transfer Automated Retrieval System (TEKTRAN)

    The book chapter presents a review of the historical importance of mango in Florida; geographical distribution of mangos in Florida; statistical data including total and seasonal production, main cultivars and their descriptors; cultural practices (i.e. propagation, fertilization, pruning); pests an...

  5. Potentiometric surface of the Floridan Aquifer, Southwest Florida Water Management District, September 1980

    USGS Publications Warehouse

    Yobbi, D.K.; Woodham, W.M.; Schiner, George R.

    1980-01-01

    A September 1980 potentiometric-surface map of the Southwest Florida Water Management District depicts the annual high water-level period. Potentiometric levels rose 1 to 31 feet between May 1980 and September 1980 in the citrus and farming sections of southern Hillsborough, northern Hardee, southwestern Polk, northwestern DeSoto, and Manatee Counties. Water levels in these areas are widely affected by reduced pumping for irrigation and have the greatest range in fluctuations. Generally, potentiometric levels were lower than previous September levels except in Citrus, eastern Levy, and western Marion Counties where levels were 0 to 8 feet higher. (USGS)

  6. Mining scientific data archives through metadata generation

    SciTech Connect

    Springmeyer, R.; Werner, N.; Long, J.

    1997-04-01

    Data analysis and management tools typically have not supported the documenting of data, so scientists must manually maintain all information pertaining to the context and history of their work. This metadata is critical to effective retrieval and use of the masses of archived data, yet little of it exists on-line or in an accessible format. Exploration of archived legacy data typically proceeds as a laborious process, using commands to navigate through file structures on several machines. This file-at-a-time approach needs to be replaced with a model that represents data as collections of interrelated objects. The tools that support this model must focus attention on data while hiding the complexity of the computational environment. This problem was addressed by developing a tool for exploring large amounts of data in UNIX directories via automatic generation of metadata summaries. This paper describes the model for metadata summaries of collections and the Data Miner tool for interactively traversing directories and automatically generating metadata that serves as a quick overview and index to the archived data. The summaries include thumbnail images as well as links to the data, related directories, and other metadata. Users may personalize the metadata by adding a title and abstract to the summary, which is presented as an HTML page viewed with a World Wide Web browser. We have designed summaries for 3 types of collections of data: contents of a single directory; virtual directories that represent relations between scattered files; and groups of related calculation files. By focusing on the scientists` view of the data mining task, we have developed techniques that assist in the ``detective work `` of mining without requiring knowledge of mundane details about formats and commands. Experiences in working with scientists to design these tools are recounted.

  7. EPA Metadata Style Guide Keywords and EPA Organization Names

    EPA Pesticide Factsheets

    The following keywords and EPA organization names listed below, along with EPA’s Metadata Style Guide, are intended to provide suggestions and guidance to assist with the standardization of metadata records.

  8. Weeping dragon, a unique ornamenal citrus

    Technology Transfer Automated Retrieval System (TEKTRAN)

    ‘Weeping Dragon’ is a new ornamental citrus cultivar developed by intercrossing of two unusual and unique citrus types, Poncirus trifoliata cultivated variety (cv.) Flying Dragon, and Citrus sinensis cv. ‘Cipo’. This new hybrid cultivar combines strongly contorted and weeping growth traits in a smal...

  9. Citrus tristeza virus-aphid interactions

    Technology Transfer Automated Retrieval System (TEKTRAN)

    A review chapter on aphid transmission of Citrus tristeza virus is provided for a book on “Vector-Mediated Transmission of Plant Pathogens”. Earliest uses of citrus goes back over two millennia as items of trade, gifts and medicinal compounds. Citrus propagation during this period was by seed and si...

  10. Citrus tristeza virus-host interactions

    Technology Transfer Automated Retrieval System (TEKTRAN)

    Citrus tristeza virus (CTV) is a phloem-limited virus whose natural host range is restricted to citrus and related species. Although the virus has killed millions of trees, almost destroying whole industries, and continually limits production in many citrus growing areas, most isolates are mild or s...

  11. Citrus Limonoids: Analysis, Bioactivity, and Biomedical Prospects

    Technology Transfer Automated Retrieval System (TEKTRAN)

    This publication is a review of the chemistry, biochemistry and bioactivity of limonoids occurring in citrus. The review chronologically relates the evolution of research in citrus limonoids beginning with their association with bitterness development in citrus juices. The chemical and biochemical...

  12. Progress in defining a standard for file-level metadata

    NASA Technical Reports Server (NTRS)

    Williams, Joel; Kobler, Ben

    1996-01-01

    In the following narrative, metadata required to locate a file on tape or collection of tapes will be referred to as file-level metadata. This paper discribes the rationale for and the history of the effort to define a standard for this metadata.

  13. Multimedia Learning Systems Based on IEEE Learning Object Metadata (LOM).

    ERIC Educational Resources Information Center

    Holzinger, Andreas; Kleinberger, Thomas; Muller, Paul

    One of the "hottest" topics in recent information systems and computer science is metadata. Learning Object Metadata (LOM) appears to be a very powerful mechanism for representing metadata, because of the great variety of LOM Objects. This is on of the reasons why the LOM standard is repeatedly cited in projects in the field of eLearning…

  14. Enhancing SCORM Metadata for Assessment Authoring in E-Learning

    ERIC Educational Resources Information Center

    Chang, Wen-Chih; Hsu, Hui-Huang; Smith, Timothy K.; Wang, Chun-Chia

    2004-01-01

    With the rapid development of distance learning and the XML technology, metadata play an important role in e-Learning. Nowadays, many distance learning standards, such as SCORM, AICC CMI, IEEE LTSC LOM and IMS, use metadata to tag learning materials. However, most metadata models are used to define learning materials and test problems. Few…

  15. Metadata Evaluation: The Road toward Meeting Our Objectives (SIG LAN)

    ERIC Educational Resources Information Center

    Cuddy, Colleen

    2000-01-01

    Lists the three presentation titles that were part of this technical session on metadata evaluation, including "An Update on the Dublin Core" (Stuart Weibel; "Metadata Development Update" (Kathleen Burnett and Jeong-Mee Lee); and "Metadata Standards for Discovery and Retrieval of Learning Objects" (Stuart Sutton).…

  16. Florida Keys

    NASA Technical Reports Server (NTRS)

    2002-01-01

    The Florida Keys are a chain of islands, islets and reefs extending from Virginia Key to the Dry Tortugas for about 309 kilometers (192 miles). The keys are chiefly limestone and coral formations. The larger islands of the group are Key West (with its airport), Key Largo, Sugarloaf Key, and Boca Chica Key. A causeway extends from the mainland to Key West.

    This image was acquired on October 28, 2001, by the Advanced Spaceborne Thermal Emission and Reflection Radiometer (ASTER) on NASA's Terra satellite. With its 14 spectral bands from the visible to the thermal infrared wavelength region, and its high spatial resolution of 15 to 90 meters (about 50 to 300 feet), ASTER images Earth to map and monitor the changing surface of our planet.

    ASTER is one of five Earth-observing instruments launched December 18, 1999, on NASA's Terra satellite. The instrument was built by Japan's Ministry of Economy, Trade and Industry. A joint U.S./Japan science team is responsible for validation and calibration of the instrument and the data products.

    The broad spectral coverage and high spectral resolution of ASTER will provide scientists in numerous disciplines with critical information for surface mapping, and monitoring of dynamic conditions and temporal change. Example applications are: monitoring glacial advances and retreats; monitoring potentially active volcanoes; identifying crop stress; determining cloud morphology and physical properties; wetlands evaluation; thermal pollution monitoring; coral reef degradation; surface temperature mapping of soils and geology; and measuring surface heat balance.

    Dr. Anne Kahle at NASA's Jet Propulsion Laboratory, Pasadena, Calif., is the U.S. Science team leader; Bjorn Eng of JPL is the project manager. The Terra mission is part of NASA's Earth Science Enterprise, a long- term research effort to understand and protect our home planet. Through the study of Earth, NASA will help to provide sound science to policy and economic

  17. Transcriptome Profiling of Huanglongbing (HLB) Tolerant and Susceptible Citrus Plants Reveals the Role of Basal Resistance in HLB Tolerance

    PubMed Central

    Wang, Yunsheng; Zhou, Lijuan; Yu, Xiaoyue; Stover, Ed; Luo, Feng; Duan, Yongping

    2016-01-01

    Huanglongbing (HLB) is currently the most destructive disease of citrus worldwide. Although there is no immune cultivar, field tolerance to HLB within citrus and citrus relatives has been observed at the USDA Picos farm at Ft. Pierce, Florida, where plants have been exposed to a very high level of HLB pressure since 2006. In this study, we used RNA-Seq to evaluate expression differences between two closely related cultivars after HLB infection: HLB-tolerant “Jackson” grapefruit-like-hybrid trees and HLB susceptible “Marsh” grapefruit trees. A total of 686 genes were differentially expressed (DE) between the two cultivars. Among them, 247 genes were up-expressed and 439 were down-expressed in tolerant citrus trees. We also identified a total of 619 genes with significant differential expression of alternative splicing isoforms between HLB tolerant and HLB susceptible citrus trees. We analyzed the functional categories of DE genes using two methods, and revealed that multiple pathways have been suppressed or activated in the HLB tolerant citrus trees, which lead to the activation of the basal resistance or immunity of citrus plants. We have experimentally verified the expressions of 14 up-expressed genes and 19 down-expressed genes on HLB-tolerant “Jackson” trees and HLB-susceptible “Marsh” trees using real time PCR. The results showed that the expression of most genes were in agreement with the RNA-Seq results. This study provided new insights into HLB-tolerance and useful guidance for breeding HLB-tolerant citrus in the future. PMID:27446161

  18. Metadata management and semantics in microarray repositories.

    PubMed

    Kocabaş, F; Can, T; Baykal, N

    2011-12-01

    The number of microarray and other high-throughput experiments on primary repositories keeps increasing as do the size and complexity of the results in response to biomedical investigations. Initiatives have been started on standardization of content, object model, exchange format and ontology. However, there are backlogs and inability to exchange data between microarray repositories, which indicate that there is a great need for a standard format and data management. We have introduced a metadata framework that includes a metadata card and semantic nets that make experimental results visible, understandable and usable. These are encoded in syntax encoding schemes and represented in RDF (Resource Description Frame-word), can be integrated with other metadata cards and semantic nets, and can be exchanged, shared and queried. We demonstrated the performance and potential benefits through a case study on a selected microarray repository. We concluded that the backlogs can be reduced and that exchange of information and asking of knowledge discovery questions can become possible with the use of this metadata framework.

  19. Tracking Actual Usage: The Attention Metadata Approach

    ERIC Educational Resources Information Center

    Wolpers, Martin; Najjar, Jehad; Verbert, Katrien; Duval, Erik

    2007-01-01

    The information overload in learning and teaching scenarios is a main hindering factor for efficient and effective learning. New methods are needed to help teachers and students in dealing with the vast amount of available information and learning material. Our approach aims to utilize contextualized attention metadata to capture behavioural…

  20. Educational Metadata and Brokerage for Learning Resources.

    ERIC Educational Resources Information Center

    Anido, Luis E.; Fernandez, Manuel J.; Caeiro, Manuel; Santos, Juan M.; Rodriguez, Judith S.; Llamas, Martin

    2002-01-01

    Discusses the need for standardization for learning technologies in computer-based training systems. Highlights include institutions and organizations involved in standardization; a survey of educational metadata; how these data models are applied by actual software systems to facilitate the location of learning resources; and educational…

  1. Digital Preservation and Metadata: History, Theory, Practice.

    ERIC Educational Resources Information Center

    Lazinger, Susan S.

    This book addresses critical issues of digital preservation, providing guidelines for protecting resources from dealing with obsolescence, to responsibilities, methods of preservation, cost, and metadata formats. It also shows numerous national and international institutions that provide frameworks for digital libraries and archives. The first…

  2. Metadata: Pure and Simple, or Is It?

    ERIC Educational Resources Information Center

    Chalmers, Marilyn

    2002-01-01

    Discusses issues concerning metadata in Web pages based on experiences in a vocational education center library in Queensland (Australia). Highlights include Dublin Core elements; search engines; controlled vocabulary; performance measurement to assess usage patterns and provide quality control over the vocabulary; and considerations given the…

  3. MODS: The Metadata Object Description Schema.

    ERIC Educational Resources Information Center

    Guenther, Rebecca S.

    2003-01-01

    Focuses on the Metadata Object Description Schema (MODS) developed by the Library of Congress' Network Development and MARC Standards Office. Discuses reasons for MODS development; advantages of MODS; features of MODS; prospective uses for MODS; relationship with MARC and MARCXML; comparison with Dublin Core element set; and experimentation with…

  4. Metadata Exporter for Scientific Photography Management

    NASA Astrophysics Data System (ADS)

    Staudigel, D.; English, B.; Delaney, R.; Staudigel, H.; Koppers, A.; Hart, S.

    2005-12-01

    Photographs have become an increasingly important medium, especially with the advent of digital cameras. It has become inexpensive to take photographs and quickly post them on a website. However informative photos may be, they still need to be displayed in a convenient way, and be cataloged in such a manner that makes them easily locatable. Managing the great number of photographs that digital cameras allow and creating a format for efficient dissemination of the information related to the photos is a tedious task. Products such as Apple's iPhoto have greatly eased the task of managing photographs, However, they often have limitations. Un-customizable metadata fields and poor metadata extraction tools limit their scientific usefulness. A solution to this persistent problem is a customizable metadata exporter. On the ALIA expedition, we successfully managed the thousands of digital photos we took. We did this with iPhoto and a version of the exporter that is now available to the public under the name "CustomHTMLExport" (http://www.versiontracker.com/dyn/moreinfo/macosx/27777), currently undergoing formal beta testing This software allows the use of customized metadata fields (including description, time, date, GPS data, etc.), which is exported along with the photo. It can also produce webpages with this data straight from iPhoto, in a much more flexible way than is already allowed. With this tool it becomes very easy to manage and distribute scientific photos.

  5. A Rich Metadata Filesystem for Scientific Data

    ERIC Educational Resources Information Center

    Bui, Hoang

    2012-01-01

    As scientific research becomes more data intensive, there is an increasing need for scalable, reliable, and high performance storage systems. Such data repositories must provide both data archival services and rich metadata, and cleanly integrate with large scale computing resources. ROARS is a hybrid approach to distributed storage that provides…

  6. The International Learning Object Metadata Survey

    ERIC Educational Resources Information Center

    Friesen, Norm

    2004-01-01

    A wide range of projects and organizations is currently making digital learning resources (learning objects) available to instructors, students, and designers via systematic, standards-based infrastructures. One standard that is central to many of these efforts and infrastructures is known as Learning Object Metadata (IEEE 1484.12.1-2002, or LOM).…

  7. DIRAC File Replica and Metadata Catalog

    NASA Astrophysics Data System (ADS)

    Tsaregorodtsev, A.; Poss, S.

    2012-12-01

    File replica and metadata catalogs are essential parts of any distributed data management system, which are largely determining its functionality and performance. A new File Catalog (DFC) was developed in the framework of the DIRAC Project that combines both replica and metadata catalog functionality. The DFC design is based on the practical experience with the data management system of the LHCb Collaboration. It is optimized for the most common patterns of the catalog usage in order to achieve maximum performance from the user perspective. The DFC supports bulk operations for replica queries and allows quick analysis of the storage usage globally and for each Storage Element separately. It supports flexible ACL rules with plug-ins for various policies that can be adopted by a particular community. The DFC catalog allows to store various types of metadata associated with files and directories and to perform efficient queries for the data based on complex metadata combinations. Definition of file ancestor-descendent relation chains is also possible. The DFC catalog is implemented in the general DIRAC distributed computing framework following the standard grid security architecture. In this paper we describe the design of the DFC and its implementation details. The performance measurements are compared with other grid file catalog implementations. The experience of the DFC Catalog usage in the CLIC detector project are discussed.

  8. Use of Metadata Vocabularies in Data Retrieval.

    ERIC Educational Resources Information Center

    Cortez, Edwin M.

    1999-01-01

    Introduces a prototype system for devising and using a metadata vocabulary for data retrieval, based on a project at the United States Department of Agriculture. A unified information-access system called REEIS (Research, Education, Economics, Extension Information System) is being designed to provide a knowledge base of programs, projects, and…

  9. The Metadata Approach to Accessing Government Information.

    ERIC Educational Resources Information Center

    Moen, William E.

    2001-01-01

    Provides an overview of the articles in this issue, includes a history of the development of GILS (Government Information Locator Service), and offers perspectives on the importance of metadata for resource description and resource discovery. Presents interoperability as a challenge in integrating access to government information locator services.…

  10. Metadata Effectiveness in Internet Discovery: An Analysis of Digital Collection Metadata Elements and Internet Search Engine Keywords

    ERIC Educational Resources Information Center

    Yang, Le

    2016-01-01

    This study analyzed digital item metadata and keywords from Internet search engines to learn what metadata elements actually facilitate discovery of digital collections through Internet keyword searching and how significantly each metadata element affects the discovery of items in a digital repository. The study found that keywords from Internet…

  11. Metadata Authoring with Versatility and Extensibility

    NASA Technical Reports Server (NTRS)

    Pollack, Janine; Olsen, Lola

    2004-01-01

    NASA's Global Change Master Directory (GCMD) assists the scientific community in the discovery of and linkage to Earth science data sets and related services. The GCMD holds over 13,800 data set descriptions in Directory Interchange Format (DIF) and 700 data service descriptions in Service Entry Resource Format (SERF), encompassing the disciplines of geology, hydrology, oceanography, meteorology, and ecology. Data descriptions also contain geographic coverage information and direct links to the data, thus allowing researchers to discover data pertaining to a geographic location of interest, then quickly acquire those data. The GCMD strives to be the preferred data locator for world-wide directory-level metadata. In this vein, scientists and data providers must have access to intuitive and efficient metadata authoring tools. Existing GCMD tools are attracting widespread usage; however, a need for tools that are portable, customizable and versatile still exists. With tool usage directly influencing metadata population, it has become apparent that new tools are needed to fill these voids. As a result, the GCMD has released a new authoring tool allowing for both web-based and stand-alone authoring of descriptions. Furthermore, this tool incorporates the ability to plug-and-play the metadata format of choice, offering users options of DIF, SERF, FGDC, ISO or any other defined standard. Allowing data holders to work with their preferred format, as well as an option of a stand-alone application or web-based environment, docBUlLDER will assist the scientific community in efficiently creating quality data and services metadata.

  12. Making metadata usable in a multi-national research setting.

    PubMed

    Ellul, Claire; Foord, Joanna; Mooney, John

    2013-11-01

    SECOA (Solutions for Environmental Contrasts in Coastal Areas) is a multi-national research project examining the effects of human mobility on urban settlements in fragile coastal environments. This paper describes the setting up of a SECOA metadata repository for non-specialist researchers such as environmental scientists and tourism experts. Conflicting usability requirements of two groups - metadata creators and metadata users - are identified along with associated limitations of current metadata standards. A description is given of a configurable metadata system designed to grow as the project evolves. This work is of relevance for similar projects such as INSPIRE.

  13. Making Interoperability Easier with NASA's Metadata Management Tool (MMT)

    NASA Technical Reports Server (NTRS)

    Shum, Dana; Reese, Mark; Pilone, Dan; Baynes, Katie

    2016-01-01

    While the ISO-19115 collection level metadata format meets many users' needs for interoperable metadata, it can be cumbersome to create it correctly. Through the MMT's simple UI experience, metadata curators can create and edit collections which are compliant with ISO-19115 without full knowledge of the NASA Best Practices implementation of ISO-19115 format. Users are guided through the metadata creation process through a forms-based editor, complete with field information, validation hints and picklists. Once a record is completed, users can download the metadata in any of the supported formats with just 2 clicks.

  14. Spectral sensitivity of the Asian citrus psyllid, Diaphorina citri

    Technology Transfer Automated Retrieval System (TEKTRAN)

    The Asian Citrus psyllid, Diaphorina citri, as a vector of the bacteria causing citrus greening, is considered one of the most important citrus pests globally. Movement of infected psyllids onto uninfected young citrus remains a key concern for the maintenance of citrus production. Attraction of d...

  15. Multi-facetted Metadata - Describing datasets with different metadata schemas at the same time

    NASA Astrophysics Data System (ADS)

    Ulbricht, Damian; Klump, Jens; Bertelmann, Roland

    2013-04-01

    Inspired by the wish to re-use research data a lot of work is done to bring data systems of the earth sciences together. Discovery metadata is disseminated to data portals to allow building of customized indexes of catalogued dataset items. Data that were once acquired in the context of a scientific project are open for reappraisal and can now be used by scientists that were not part of the original research team. To make data re-use easier, measurement methods and measurement parameters must be documented in an application metadata schema and described in a written publication. Linking datasets to publications - as DataCite [1] does - requires again a specific metadata schema and every new use context of the measured data may require yet another metadata schema sharing only a subset of information with the meta information already present. To cope with the problem of metadata schema diversity in our common data repository at GFZ Potsdam we established a solution to store file-based research data and describe these with an arbitrary number of metadata schemas. Core component of the data repository is an eSciDoc infrastructure that provides versioned container objects, called eSciDoc [2] "items". The eSciDoc content model allows assigning files to "items" and adding any number of metadata records to these "items". The eSciDoc items can be submitted, revised, and finally published, which makes the data and metadata available through the internet worldwide. GFZ Potsdam uses eSciDoc to support its scientific publishing workflow, including mechanisms for data review in peer review processes by providing temporary web links for external reviewers that do not have credentials to access the data. Based on the eSciDoc API, panMetaDocs [3] provides a web portal for data management in research projects. PanMetaDocs, which is based on panMetaWorks [4], is a PHP based web application that allows to describe data with any XML-based schema. It uses the eSciDoc infrastructures

  16. Towards Data Value-Level Metadata for Clinical Studies.

    PubMed

    Zozus, Meredith Nahm; Bonner, Joseph

    2017-01-01

    While several standards for metadata describing clinical studies exist, comprehensive metadata to support traceability of data from clinical studies has not been articulated. We examine uses of metadata in clinical studies. We examine and enumerate seven sources of data value-level metadata in clinical studies inclusive of research designs across the spectrum of the National Institutes of Health definition of clinical research. The sources of metadata inform categorization in terms of metadata describing the origin of a data value, the definition of a data value, and operations to which the data value was subjected. The latter is further categorized into information about changes to a data value, movement of a data value, retrieval of a data value, and data quality checks, constraints or assessments to which the data value was subjected. The implications of tracking and managing data value-level metadata are explored.

  17. Efficient processing of MPEG-21 metadata in the binary domain

    NASA Astrophysics Data System (ADS)

    Timmerer, Christian; Frank, Thomas; Hellwagner, Hermann; Heuer, Jörg; Hutter, Andreas

    2005-10-01

    XML-based metadata is widely adopted across the different communities and plenty of commercial and open source tools for processing and transforming are available on the market. However, all of these tools have one thing in common: they operate on plain text encoded metadata which may become a burden in constrained and streaming environments, i.e., when metadata needs to be processed together with multimedia content on the fly. In this paper we present an efficient approach for transforming such kind of metadata which are encoded using MPEG's Binary Format for Metadata (BiM) without additional en-/decoding overheads, i.e., within the binary domain. Therefore, we have developed an event-based push parser for BiM encoded metadata which transforms the metadata by a limited set of processing instructions - based on traditional XML transformation techniques - operating on bit patterns instead of cost-intensive string comparisons.

  18. Energy recovery by production of fuel from citrus wastes

    SciTech Connect

    Wesley Clark, C.

    1982-05-01

    A study to determine how much energy can be recovered from a Florida citrus processing plant was conducted. The production of ethyl alcohol in particular was examined as it is thought to represent the greatest potential for immediate energy recovery. Three-fourths of the energy expended to produce, harvest, process and market a box of fruit was recoverable using existing technology, i.e. 78,500 Btu/ box of fruit recoverable from a total energy expenditure of 107,800 Btu/ box of fruit. Aside from the actual cost benefits of recovering energy in the form of ethanol, the food processor is also helping to reduce the foreign-oil imports by the blending of ethyl alcohol with unleaded gasoline to form gasohol.

  19. Preserving Geological Samples and Metadata from Polar Regions

    NASA Astrophysics Data System (ADS)

    Grunow, A.; Sjunneskog, C. M.

    2011-12-01

    The Office of Polar Programs at the National Science Foundation (NSF-OPP) has long recognized the value of preserving earth science collections due to the inherent logistical challenges and financial costs of collecting geological samples from Polar Regions. NSF-OPP established two national facilities to make Antarctic geological samples and drill cores openly and freely available for research. The Antarctic Marine Geology Research Facility (AMGRF) at Florida State University was established in 1963 and archives Antarctic marine sediment cores, dredge samples and smear slides along with ship logs. The United States Polar Rock Repository (USPRR) at Ohio State University was established in 2003 and archives polar rock samples, marine dredges, unconsolidated materials and terrestrial cores, along with associated materials such as field notes, maps, raw analytical data, paleomagnetic cores, thin sections, microfossil mounts, microslides and residues. The existence of the AMGRF and USPRR helps to minimize redundant sample collecting, lessen the environmental impact of doing polar field work, facilitates field logistics planning and complies with the data sharing requirement of the Antarctic Treaty. USPRR acquires collections through donations from institutions and scientists and then makes these samples available as no-cost loans for research, education and museum exhibits. The AMGRF acquires sediment cores from US based and international collaboration drilling projects in Antarctica. Destructive research techniques are allowed on the loaned samples and loan requests are accepted from any accredited scientific institution in the world. Currently, the USPRR has more than 22,000 cataloged rock samples available to scientists from around the world. All cataloged samples are relabeled with a USPRR number, weighed, photographed and measured for magnetic susceptibility. Many aspects of the sample metadata are included in the database, e.g. geographical location, sample

  20. Mating Type and Simple Sequence Repeat Markers Indicate a Clonal Population of Phyllosticta citricarpa in Florida.

    PubMed

    Wang, Nan-Yi; Zhang, Ke; Huguet-Tapia, Jose C; Rollins, Jeffrey A; Dewdney, Megan M

    2016-11-01

    Phyllosticta citricarpa, the citrus black spot pathogen, was first identified in Florida in March 2010. Subsequently, this pathogen has become established in Florida but can be easily confused with the endemic nonpathogenic citrus endophyte P. capitalensis. In this study, the mating-type (MAT) loci of P. citricarpa and P. capitalensis were identified via draft genome sequencing and were characterized at the structural and sequence levels. P. citricarpa was determined to have an idiomorphic, heterothallic MAT locus structure, whereas P. capitalensis was found to have a single MAT locus consistent with a homothallic mating system. A survey of P. citricarpa isolates from Florida revealed that only the MAT1-2 idiomorph existed in the Floridian population. In contrast, isolates collected from Australia exhibited a 1:1 ratio of MAT1-1 and MAT1-2 isolates. Development and analysis of simple sequence repeat markers revealed a single multilocus genotype (MLG) in the Floridian population (n = 70) and 11 MLG within the Australian population (n = 24). These results indicate that isolates of P. citricarpa from Florida are likely descendent from a single clonal lineage and are reproducing asexually. The disease management focus in Florida will need to be concentrated on the production and dispersal of pycnidiospores.

  1. Citrus Functional Genomics and Molecular Modeling in Relation to Citrus sinensis (Sweet Orange) Infection with Xylella fastidiosa (Citrus Variegated Chlorosis).

    PubMed

    Dwivedi, Upendra N; Tiwari, Sameeksha; Prasanna, Pragya; Awasthi, Manika; Singh, Swati; Pandey, Veda P

    2016-08-01

    Citrus are among the economically most important fruit tree crops in the world. Citrus variegated chlorosis (CVC), caused by Xylella fastidiosa infection, is a serious disease limiting citrus production at a global scale. With availability of citrus genomic resources, it is now possible to compare citrus expressed sequence tag (EST) data sets and identify single-nucleotide polymorphisms (SNPs) within and among different citrus cultivars that can be exploited for citrus resistance to infections, citrus breeding, among others. We report here, for the first time, SNPs in the EST data sets of X. fastidiosa-infected Citrus sinensis (sweet orange) and their functional annotation that revealed the involvement of eight C. sinensis candidate genes in CVC pathogenesis. Among these genes were xyloglucan endotransglycosylase, myo-inositol-1-phosphate synthase, and peroxidase were found to be involved in plant cell wall metabolism. These have been further investigated by molecular modeling for their role in CVC infection and defense. Molecular docking analyses of the wild and the mutant (SNP containing) types of the selected three enzymes with their respective substrates revealed a significant decrease in the binding affinity of substrates for the mutant enzymes, thus suggesting a decrease in the catalytic efficiency of these enzymes during infection, thereby facilitating a favorable condition for infection by the pathogen. These findings offer novel agrigenomics insights in developing future molecular targets and strategies for citrus fruit cultivation in ways that are resistant to X. fastidiosa infection, and by extension, with greater harvesting efficiency and economic value.

  2. Florida Energy Assurance Plan

    NASA Astrophysics Data System (ADS)

    Turner, Niescja E.; Murtagh, William; Guthrie, Kevin; Nykyri, Katariina; Radasky, William A.; Senkowicz, Eric

    2012-08-01

    This spring, Florida held the nation's first statewide emergency preparedness training and exercises geared specifically to the aftermath of severe geomagnetic events. Funded by the State of Florida Division of Emergency Management (FDEM) via a Department of Energy grant and held in collaboration with Watch House International, Inquesta Corporation, and the Florida Institute of Technology, the 17-19 April 2012 workshop had 99 on-site attendees in an oceanfront hotel in Melbourne, Florida, as well as 16 over live Web streaming. The workshop was the capstone to a three-month season of 21 regional space weather training sessions and workshops serving 386 attendees in total.

  3. Site Plan & Site Section of Citrus Landscape (Showing Relationship ...

    Library of Congress Historic Buildings Survey, Historic Engineering Record, Historic Landscapes Survey

    Site Plan & Site Section of Citrus Landscape (Showing Relationship of Victoria Avenue to Citrus Groves) - Arlington Heights Citrus Landscape, Southwestern portion of city of Riverside, Riverside, Riverside County, CA

  4. Creating context for the experiment record. User-defined metadata: investigations into metadata usage in the LabTrove ELN.

    PubMed

    Willoughby, Cerys; Bird, Colin L; Coles, Simon J; Frey, Jeremy G

    2014-12-22

    The drive toward more transparency in research, the growing willingness to make data openly available, and the reuse of data to maximize the return on research investment all increase the importance of being able to find information and make links to the underlying data. The use of metadata in Electronic Laboratory Notebooks (ELNs) to curate experiment data is an essential ingredient for facilitating discovery. The University of Southampton has developed a Web browser-based ELN that enables users to add their own metadata to notebook entries. A survey of these notebooks was completed to assess user behavior and patterns of metadata usage within ELNs, while user perceptions and expectations were gathered through interviews and user-testing activities within the community. The findings indicate that while some groups are comfortable with metadata and are able to design a metadata structure that works effectively, many users are making little attempts to use it, thereby endangering their ability to recover data in the future. A survey of patterns of metadata use in these notebooks, together with feedback from the user community, indicated that while a few groups are comfortable with metadata and are able to design a metadata structure that works effectively, many users adopt a "minimum required" approach to metadata. To investigate whether the patterns of metadata use in LabTrove were unusual, a series of surveys were undertaken to investigate metadata usage in a variety of platforms supporting user-defined metadata. These surveys also provided the opportunity to investigate whether interface designs in these other environments might inform strategies for encouraging metadata creation and more effective use of metadata in LabTrove.

  5. Chipping citrus wood for gasification

    SciTech Connect

    Churchill, D.B.; Hedden, S.L.; Whitney, J.D.; Shaw, L.N.

    1985-01-01

    Non-productive citrus trees were chipped with a portable fly-wheel-type chipper powered by a 45 kW engine. Chips were air dried under an open shed to 14% (w.b.) moisture content. By weight, approximately 50% of the total tree could be made into usable chips. The root system averaged 36% of the total tree weight.

  6. PIMMS tools for capturing metadata about simulations

    NASA Astrophysics Data System (ADS)

    Pascoe, Charlotte; Devine, Gerard; Tourte, Gregory; Pascoe, Stephen; Lawrence, Bryan; Barjat, Hannah

    2013-04-01

    PIMMS (Portable Infrastructure for the Metafor Metadata System) provides a method for consistent and comprehensive documentation of modelling activities that enables the sharing of simulation data and model configuration information. The aim of PIMMS is to package the metadata infrastructure developed by Metafor for CMIP5 so that it can be used by climate modelling groups in UK Universities. PIMMS tools capture information about simulations from the design of experiments to the implementation of experiments via simulations that run models. PIMMS uses the Metafor methodology which consists of a Common Information Model (CIM), Controlled Vocabularies (CV) and software tools. PIMMS software tools provide for the creation and consumption of CIM content via a web services infrastructure and portal developed by the ES-DOC community. PIMMS metadata integrates with the ESGF data infrastructure via the mapping of vocabularies onto ESGF facets. There are three paradigms of PIMMS metadata collection: Model Intercomparision Projects (MIPs) where a standard set of questions is asked of all models which perform standard sets of experiments. Disciplinary level metadata collection where a standard set of questions is asked of all models but experiments are specified by users. Bespoke metadata creation where the users define questions about both models and experiments. Examples will be shown of how PIMMS has been configured to suit each of these three paradigms. In each case PIMMS allows users to provide additional metadata beyond that which is asked for in an initial deployment. The primary target for PIMMS is the UK climate modelling community where it is common practice to reuse model configurations from other researchers. This culture of collaboration exists in part because climate models are very complex with many variables that can be modified. Therefore it has become common practice to begin a series of experiments by using another climate model configuration as a starting

  7. GraphMeta: Managing HPC Rich Metadata in Graphs

    SciTech Connect

    Dai, Dong; Chen, Yong; Carns, Philip; Jenkins, John; Zhang, Wei; Ross, Robert

    2016-01-01

    High-performance computing (HPC) systems face increasingly critical metadata management challenges, especially in the approaching exascale era. These challenges arise not only from exploding metadata volumes, but also from increasingly diverse metadata, which contains data provenance and arbitrary user-defined attributes in addition to traditional POSIX metadata. This ‘rich’ metadata is becoming critical to supporting advanced data management functionality such as data auditing and validation. In our prior work, we identified a graph-based model as a promising solution to uniformly manage HPC rich metadata due to its flexibility and generality. However, at the same time, graph-based HPC rich metadata anagement also introduces significant challenges to the underlying infrastructure. In this study, we first identify the challenges on the underlying infrastructure to support scalable, high-performance rich metadata management. Based on that, we introduce GraphMeta, a graphbased engine designed for this use case. It achieves performance scalability by introducing a new graph partitioning algorithm and a write-optimal storage engine. We evaluate GraphMeta under both synthetic and real HPC metadata workloads, compare it with other approaches, and demonstrate its advantages in terms of efficiency and usability for rich metadata management in HPC systems.

  8. Evaluating non-relational storage technology for HEP metadata and meta-data catalog

    NASA Astrophysics Data System (ADS)

    Grigorieva, M. A.; Golosova, M. V.; Gubin, M. Y.; Klimentov, A. A.; Osipova, V. V.; Ryabinkin, E. A.

    2016-10-01

    Large-scale scientific experiments produce vast volumes of data. These data are stored, processed and analyzed in a distributed computing environment. The life cycle of experiment is managed by specialized software like Distributed Data Management and Workload Management Systems. In order to be interpreted and mined, experimental data must be accompanied by auxiliary metadata, which are recorded at each data processing step. Metadata describes scientific data and represent scientific objects or results of scientific experiments, allowing them to be shared by various applications, to be recorded in databases or published via Web. Processing and analysis of constantly growing volume of auxiliary metadata is a challenging task, not simpler than the management and processing of experimental data itself. Furthermore, metadata sources are often loosely coupled and potentially may lead to an end-user inconsistency in combined information queries. To aggregate and synthesize a range of primary metadata sources, and enhance them with flexible schema-less addition of aggregated data, we are developing the Data Knowledge Base architecture serving as the intelligence behind GUIs and APIs.

  9. Small RNA profiling reveals phosphorus deficiency as a contributing factor in symptom expression for citrus huanglongbing disease.

    PubMed

    Zhao, Hongwei; Sun, Ruobai; Albrecht, Ute; Padmanabhan, Chellappan; Wang, Airong; Coffey, Michael D; Girke, Thomas; Wang, Zonghua; Close, Timothy J; Roose, Mikeal; Yokomi, Raymond K; Folimonova, Svetlana; Vidalakis, Georgios; Rouse, Robert; Bowman, Kim D; Jin, Hailing

    2013-03-01

    Huanglongbing (HLB) is a devastating citrus disease that is associated with bacteria of the genus 'Candidatus Liberibacter' (Ca. L.). Powerful diagnostic tools and management strategies are desired to control HLB. Host small RNAs (sRNA) play a vital role in regulating host responses to pathogen infection and are used as early diagnostic markers for many human diseases, including cancers. To determine whether citrus sRNAs regulate host responses to HLB, sRNAs were profiled from Citrus sinensis 10 and 14 weeks post grafting with Ca. L. asiaticus (Las)-positive or healthy tissue. Ten new microRNAs (miRNAs), 76 conserved miRNAs, and many small interfering RNAs (siRNAs) were discovered. Several miRNAs and siRNAs were highly induced by Las infection, and can be potentially developed into early diagnosis markers of HLB. miR399, which is induced by phosphorus starvation in other plant species, was induced specifically by infection of Las but not Spiroplasma citri that causes citrus stubborn-a disease with symptoms similar to HLB. We found a 35% reduction of phosphorus in Las-positive citrus trees compared to healthy trees. Applying phosphorus oxyanion solutions to HLB-positive sweet orange trees reduced HLB symptom severity and significantly improved fruit production during a 3-year field trial in south-west Florida. Our molecular, physiological, and field data suggest that phosphorus deficiency is linked to HLB disease symptomology.

  10. Ontology-Based Search of Genomic Metadata.

    PubMed

    Fernandez, Javier D; Lenzerini, Maurizio; Masseroli, Marco; Venco, Francesco; Ceri, Stefano

    2016-01-01

    The Encyclopedia of DNA Elements (ENCODE) is a huge and still expanding public repository of more than 4,000 experiments and 25,000 data files, assembled by a large international consortium since 2007; unknown biological knowledge can be extracted from these huge and largely unexplored data, leading to data-driven genomic, transcriptomic, and epigenomic discoveries. Yet, search of relevant datasets for knowledge discovery is limitedly supported: metadata describing ENCODE datasets are quite simple and incomplete, and not described by a coherent underlying ontology. Here, we show how to overcome this limitation, by adopting an ENCODE metadata searching approach which uses high-quality ontological knowledge and state-of-the-art indexing technologies. Specifically, we developed S.O.S. GeM (http://www.bioinformatics.deib.polimi.it/SOSGeM/), a system supporting effective semantic search and retrieval of ENCODE datasets. First, we constructed a Semantic Knowledge Base by starting with concepts extracted from ENCODE metadata, matched to and expanded on biomedical ontologies integrated in the well-established Unified Medical Language System. We prove that this inference method is sound and complete. Then, we leveraged the Semantic Knowledge Base to semantically search ENCODE data from arbitrary biologists' queries. This allows correctly finding more datasets than those extracted by a purely syntactic search, as supported by the other available systems. We empirically show the relevance of found datasets to the biologists' queries.

  11. Content standards for medical image metadata

    NASA Astrophysics Data System (ADS)

    d'Ornellas, Marcos C.; da Rocha, Rafael P.

    2003-12-01

    Medical images are at the heart of the healthcare diagnostic procedures. They have provided not only a noninvasive mean to view anatomical cross-sections of internal organs but also a mean for physicians to evaluate the patient"s diagnosis and monitor the effects of the treatment. For a Medical Center, the emphasis may shift from the generation of image to post processing and data management since the medical staff may generate even more processed images and other data from the original image after various analyses and post processing. A medical image data repository for health care information system is becoming a critical need. This data repository would contain comprehensive patient records, including information such as clinical data and related diagnostic images, and post-processed images. Due to the large volume and complexity of the data as well as the diversified user access requirements, the implementation of the medical image archive system will be a complex and challenging task. This paper discusses content standards for medical image metadata. In addition it also focuses on the image metadata content evaluation and metadata quality management.

  12. Leveraging Metadata to Create Interactive Images... Today!

    NASA Astrophysics Data System (ADS)

    Hurt, Robert L.; Squires, G. K.; Llamas, J.; Rosenthal, C.; Brinkworth, C.; Fay, J.

    2011-01-01

    The image gallery for NASA's Spitzer Space Telescope has been newly rebuilt to fully support the Astronomy Visualization Metadata (AVM) standard to create a new user experience both on the website and in other applications. We encapsulate all the key descriptive information for a public image, including color representations and astronomical and sky coordinates and make it accessible in a user-friendly form on the website, but also embed the same metadata within the image files themselves. Thus, images downloaded from the site will carry with them all their descriptive information. Real-world benefits include display of general metadata when such images are imported into image editing software (e.g. Photoshop) or image catalog software (e.g. iPhoto). More advanced support in Microsoft's WorldWide Telescope can open a tagged image after it has been downloaded and display it in its correct sky position, allowing comparison with observations from other observatories. An increasing number of software developers are implementing AVM support in applications and an online image archive for tagged images is under development at the Spitzer Science Center. Tagging images following the AVM offers ever-increasing benefits to public-friendly imagery in all its standard forms (JPEG, TIFF, PNG). The AVM standard is one part of the Virtual Astronomy Multimedia Project (VAMP); http://www.communicatingastronomy.org

  13. 76 FR 23449 - Citrus Canker, Citrus Greening, and Asian Citrus Psyllid; Interstate Movement of Regulated...

    Federal Register 2010, 2011, 2012, 2013, 2014

    2011-04-27

    ... conditions, the articles are treated with methyl bromide and shipped in a container that has been sealed with... of any regulated article, including citrus nursery stock, provided that: The article is treated with methyl bromide in accordance with 7 CFR part 305. That part contains our phytosanitary...

  14. Mild strain cross protection of tristeza: A review of research to protect against decline on sour orange in Florida and a look at the future

    Technology Transfer Automated Retrieval System (TEKTRAN)

    Tristeza, caused by Citrus tristeza virus (CTV), has long been present in Florida, but outbreaks of decline on sour orange rootstock were occasional events until the late 1970s. Sour orange rootstock was valued for the high quality of fruit produced. Research was directed towards the selection and...

  15. 78 FR 8435 - Importation of Fresh Citrus Fruit From Uruguay, Including Citrus Hybrids and Fortunella

    Federal Register 2010, 2011, 2012, 2013, 2014

    2013-02-06

    ... of citrus canker). In a previous revision of the PRA, citrus black spot (Guignardia citricarpa Kiely... of citrus black spot because the combination of conditions required for disease transmission from... compounds. However, if the rind is thin or damaged, or existing oviposition puncture holes are...

  16. Citrus Research Board-sponsored review of the University of California Riverside citrus breeding

    Technology Transfer Automated Retrieval System (TEKTRAN)

    In October 2015 the Citrus Research Board (CRB) assembled a panel of experts to review the Citrus Research Board-sponsored Citrus Research and Genetics Programs at University of California Riverside (UCR). The panel consisted of: Gennaro Fazio, USDA/ARS, Geneva, NY; Maria Angeles Forner-Giner, Insti...

  17. Evaluation of resistance to asiatic citrus canker among selections of pera sweet orange (Citrus sinensis)

    Technology Transfer Automated Retrieval System (TEKTRAN)

    Asiatic citrus canker (ACC, caused by the bacterium Xanthomonas citri subsp. citri) is a destructive disease of citrus in Brazil and in several other citrus-producing countries. ACC management is problematic, and bactericides such as copper can be reasonably efficacious but do not completely control...

  18. Field ID guide to citrus relative hosts of Asian citrus psyllid & Huanglongbing

    Technology Transfer Automated Retrieval System (TEKTRAN)

    The Rutaceae family of plants includes not only species within the genus Citrus, but also several other genera and species that may not be easily recognized as having any relationship to citrus at all. However, many of these citrus relatives are used for ornamental, culinary, or religious purposes. ...

  19. Production of transgenic citrus resistant to citrus canker and Huanglongbing diseases

    Technology Transfer Automated Retrieval System (TEKTRAN)

    Huanglongbing (HLB or citrus greening disease) caused by Candidatus Liberibacter asiaticus (Las) is a great threat to the U.S. citrus industry. There are no proven strategies to eliminate HLB disease and no cultivars identified with strong HLB resistance. Citrus canker is also an economically import...

  20. Florida's Workforce 2005.

    ERIC Educational Resources Information Center

    Florida State Dept. of Labor and Employment Security, Tallahassee.

    This report analyzes projected changes in population, labor force, and employment by industry and occupation for Florida between 1995 and 2005. More than 50 charts and graphs provide statistics on the following: Florida's population, labor force 1975-2005; employment 1975-2005; industry employment 1995-2005; occupational employment (general);…

  1. 'Florida Radiance' strawberry

    Technology Transfer Automated Retrieval System (TEKTRAN)

    'Florida Radiance' strawberry (Fragaria xananassa Duch.) is a new strawberry cultivar released by the University of Florida. It appears to be a good cultivar to complement the current commercial cultivar 'Strawberry Festival' during the early part of the production season as its yields are higher wh...

  2. The role of metadata in managing large environmental science datasets. Proceedings

    SciTech Connect

    Melton, R.B.; DeVaney, D.M.; French, J. C.

    1995-06-01

    The purpose of this workshop was to bring together computer science researchers and environmental sciences data management practitioners to consider the role of metadata in managing large environmental sciences datasets. The objectives included: establishing a common definition of metadata; identifying categories of metadata; defining problems in managing metadata; and defining problems related to linking metadata with primary data.

  3. An Approach to Metadata Generation for Learning Objects

    NASA Astrophysics Data System (ADS)

    Menendez D., Victor; Zapata G., Alfredo; Vidal C., Christian; Segura N., Alejandra; Prieto M., Manuel

    Metadata describe instructional resources and define their nature and use. Metadata are required to guarantee reusability and interchange of instructional resources into e-Learning systems. However, fulfilment of large metadata attributes is a hard and complex task for almost all LO developers. As a consequence many mistakes are made. This can cause the impoverishment of data quality in indexing, searching and recovering process. We propose a methodology to build Learning Objects from digital resources. The first phase includes automatic preprocessing of resources using techniques from information retrieval. Initial metadata obtained in this first phase are then used to search similar LO to propose missed metadata. The second phase considers assisted activities that merge computer advice with human decisions. Suggestions are based on metadata of similar Learning Object using fuzzy logic theory.

  4. Seismic attenuation in Florida

    SciTech Connect

    Bellini, J.J.; Bartolini, T.J.; Lord, K.M.; Smith, D.L. . Dept. of Geology)

    1993-03-01

    Seismic signals recorded by the expanded distribution of earthquake seismograph stations throughout Florida and data from a comprehensive review of record archives from stations GAI contribute to an initial seismic attenuation model for the Florida Plateau. Based on calculations of surface particle velocity, a pattern of attenuation exists that appears to deviate from that established for the remainder of the southeastern US. Most values suggest greater seismic attenuation within the Florida Plateau. However, a separate pattern may exist for those signals arising from the Gulf of Mexico. These results have important implications for seismic hazard assessments in Florida and may be indicative of the unique lithospheric identity of the Florida basement as an exotic terrane.

  5. Photographic Remote Sensing of Sick Citrus Trees

    NASA Technical Reports Server (NTRS)

    Gausman, H. W.

    1971-01-01

    Remote sensing with infrared color aerial photography (Kodak Ektachrome Infrared Aero 8443 film) for detecting citrus tree anomalies is described. Illustrations and discussions are given for detecting nutrient toxicity symptoms, for detecting foot rot and sooty mold fungal diseases, and for distinguishing among citrus species. Also, the influence of internal leaf structure on light reflectance, transmittance, and absorptance are considered; and physiological and environmental factors that affect citrus leaf light reflectance are reviewed briefly and illustrated.

  6. A metadata-driven approach to data repository design.

    PubMed

    Harvey, Matthew J; McLean, Andrew; Rzepa, Henry S

    2017-01-01

    The design and use of a metadata-driven data repository for research data management is described. Metadata is collected automatically during the submission process whenever possible and is registered with DataCite in accordance with their current metadata schema, in exchange for a persistent digital object identifier. Two examples of data preview are illustrated, including the demonstration of a method for integration with commercial software that confers rich domain-specific data analytics without introducing customisation into the repository itself.

  7. Metadata in an Integrated Geo-Climate Data Integration Framework

    NASA Astrophysics Data System (ADS)

    Blodgett, D. L.; Kunicki, T.; Walker, J. I.; Suftin, I.; Booth, N. L.; Habermann, T.; Neufeld, D.

    2011-12-01

    The U.S. Geological Survey Geo Data Portal (GDP) project established a Data Integration Framework (DIF) for service-oriented access to atmospheric and terrestrial data resources based on established data and web service standards. The GDP DIF is meant to allow generalized server-side processing services for support of interdisciplinary environmental modeling and data analysis. This presentation will focus on the metadata management and access components in use and in development as part of the GDP project. Where possible, the GDP DIF encourages that metadata be stored as attributes of data resources themselves. Tools to introspect and dynamically convert discipline specific metadata, like NetCDF-CF, to interdisciplinary standard metadata formats are used where available and are being developed in cooperation with partner data management groups. Formal data discovery metadata, once cross walked or manually generated, is stored and accessed using ISO content and encoding standards. Strategies for working with ISO metadata being developed by NOAA's National Geophysical Data Center and partner groups with an interest in combining geospatial and data web-service content, are being used and furthered as part of the GDP project. In the GDP DIF, ISO metadata is used for human understanding of metadata and linking to data web-services. Metadata required to allow computer access and manipulation, like precise coordinate reference system information, is derived directly from data web-services. The Open Geospatial Consortium suite of data and web-service standard's metadata requirements provide adequate information for generalized machine access and processing of geographic data types. The NetCDF-CF metadata conventions are used in the case of atmospheric and other data served via OPeNDAP. Integration of these two metadata conventions and associated data models was a major area of development in the GDP project. Of particular interest for this presentation, is the issue of

  8. Citrus Allergy from Pollen to Clinical Symptoms

    PubMed Central

    Iorio, Rosa Anna; Del Duca, Stefano; Calamelli, Elisabetta; Pula, Chiara; Lodolini, Magda; Scamardella, Fortuna; Pession, Andrea; Ricci, Giampaolo

    2013-01-01

    Allergy to citrus fruits is often associated with pollinosis and sensitization to other plants due to a phenomenon of cross-reactivity. The aims of the present study were to highlight the cross-reactivity among citrus and the major allergenic pollens/fruits, throughout clinical and molecular investigations, and to evaluate the sensitization frequency to citrus fruits in a population of children and adults with pollinosis. We found a relevant percentage of sensitisation (39%) to citrus fruits in the patients recruited and in all of them the IgE-mediated mechanism has been confirmed by the positive response to the prick-to-prick test. RT-PCR experiments showed the expression of Cit s 1, Cit s 3 and a profilin isoform, already described in apple, also in Citrus clementine pollen. Data of multiple sequence alignments demonstrated that Citrus allergens shared high percentage identity values with other clinically relevant species (i.e. Triticum aestivum, Malus domestica), confirming the possible cross-allergenicity citrus/grasses and citrus/apple. Finally, a novelty of the present work has been the expression of two phospholipaseA2 isoforms (PLA2 α and β) in Citrus as well as in Triticum pollens; being PLA2 able to generate pro-inflammatory factors, this enzyme could participate in the activation of the allergenic inflammatory cascade. PMID:23308273

  9. CPm gene diversity in field isolates of Citrus tristeza virus from Colombia.

    PubMed

    Oliveros-Garay, Oscar Arturo; Martinez-Salazar, Natalhie; Torres-Ruiz, Yanneth; Acosta, Orlando

    2009-01-01

    The nucleotide sequence diversity of the CPm gene from 28 field isolates of Citrus tristeza virus (CTV) was assessed by SSCP and sequence analyses. These isolates showed two major shared haplotypes, which differed in distribution: A1 was the major haplotype in 23 isolates from different geographic regions, whereas R1 was found in isolates from a discrete region. Phylogenetic reconstruction clustered A1 within an independent group, while R1 was grouped with mild isolates T30 from Florida and T385 from Spain. Some isolates contained several minor haplotypes, which were very similar to, and associated with, the major haplotype.

  10. Syntactic and Semantic Validation without a Metadata Management System

    NASA Technical Reports Server (NTRS)

    Pollack, Janine; Gokey, Christopher D.; Kendig, David; Olsen, Lola; Wharton, Stephen W. (Technical Monitor)

    2001-01-01

    The ability to maintain quality information is essential to securing the confidence in any system for which the information serves as a data source. NASA's Global Change Master Directory (GCMD), an online Earth science data locator, holds over 9000 data set descriptions and is in a constant state of flux as metadata are created and updated on a daily basis. In such a system, the importance of maintaining the consistency and integrity of these-metadata is crucial. The GCMD has developed a metadata management system utilizing XML, controlled vocabulary, and Java technologies to ensure the metadata not only adhere to valid syntax, but also exhibit proper semantics.

  11. Developing Metadata Requirements for NASA Airborne Field Campaigns

    NASA Astrophysics Data System (ADS)

    Parker, L.; Rinsland, P. L.; Kusterer, J.; Chen, G.; Early, A. B.; Beach, A. L., III; Wang, D.; Typanski, N. D.; Rutherford, M.; Rieflin, E.

    2014-12-01

    The common definition of metadata is "data about data". NASA has developed metadata formats to meet the needs of its satellite missions and emerging users. Coverage of satellite missions is highly predictable based on orbit characteristics. Airborne missions feature complicated flight patterns to maximize science return and changes in the instrument suites. More relevant to the airborne science data holding, the metadata describes the airborne measurements, in terms of measurement location, time, platform, and instruments. The metadata organizes the data holdings and facilitates the data ordering process from the DAAC. Therefore, the metadata requirements will need to fit the type of airborne measurements and sampling strategies as well as leverage current Earth Science and Data Information System infrastructure (ECHO/Reverb, GCMD). Current airborne data is generated/produced in a variety of formats (ICARRT, ASCII, etc) with the metadata information embedded in the data file. Special readers are needed to parse data file to generate metadata needed for search and discovery. With loosely defined standards within the airborne community this process poses challenges to the data providers. It is necessary to assess the suitability of current metadata standards, which have been mostly developed for satellite observations. To be presented are the use case-based assessments of the current airborne metadata standards and suggestions for future changes.

  12. Content Metadata Standards for Marine Science: A Case Study

    USGS Publications Warehouse

    Riall, Rebecca L.; Marincioni, Fausto; Lightsom, Frances L.

    2004-01-01

    The U.S. Geological Survey developed a content metadata standard to meet the demands of organizing electronic resources in the marine sciences for a broad, heterogeneous audience. These metadata standards are used by the Marine Realms Information Bank project, a Web-based public distributed library of marine science from academic institutions and government agencies. The development and deployment of this metadata standard serve as a model, complete with lessons about mistakes, for the creation of similarly specialized metadata standards for digital libraries.

  13. Wolbachia infection density in populations of the Asian citrus psyllid (Hemiptera: Liviidae).

    PubMed

    Hoffmann, M; Coy, M R; Kingdom Gibbard, H N; Pelz-Stelinski, K S

    2014-10-01

    The symbiotic relationships between bacteria of the genus Wolbachia (order Rickettsiales) and their arthropod hosts are diverse and can range from mutualism to parasitism. Whereas effects of Wolbachia on host biology are well investigated, little is known about diversity and abundance of Wolbachia in their natural hosts. The phloem-feeding Asian citrus psyllid, Diaphorina citri (Kuwayama) (Hemiptera: Liviidae), is naturally infected with Wolbachia (wDi). In the current study, we calculated the within-host density of Wolbachia in Florida D. citri populations using quantitative polymerase chain reaction for detection of the Wolbachia outer surface protein gene, wsp. Gene quantities were normalized to the D. citri wingless gene (Wg) to estimate Wolbachia abundance in individual D. citri. Using this method, significant geographic differences in Wolbachia densities were detected among Florida D. citri populations, with higher infection levels occurring in male versus female hosts.

  14. Inheritance rules for Hierarchical Metadata Based on ISO 19115

    NASA Astrophysics Data System (ADS)

    Zabala, A.; Masó, J.; Pons, X.

    2012-04-01

    Mainly, ISO19115 has been used to describe metadata for datasets and services. Furthermore, ISO19115 standard (as well as the new draft ISO19115-1) includes a conceptual model that allows to describe metadata at different levels of granularity structured in hierarchical levels, both in aggregated resources such as particularly series, datasets, and also in more disaggregated resources such as types of entities (feature type), types of attributes (attribute type), entities (feature instances) and attributes (attribute instances). In theory, to apply a complete metadata structure to all hierarchical levels of metadata, from the whole series to an individual feature attributes, is possible, but to store all metadata at all levels is completely impractical. An inheritance mechanism is needed to store each metadata and quality information at the optimum hierarchical level and to allow an ease and efficient documentation of metadata in both an Earth observation scenario such as a multi-satellite mission multiband imagery, as well as in a complex vector topographical map that includes several feature types separated in layers (e.g. administrative limits, contour lines, edification polygons, road lines, etc). Moreover, and due to the traditional split of maps in tiles due to map handling at detailed scales or due to the satellite characteristics, each of the previous thematic layers (e.g. 1:5000 roads for a country) or band (Landsat-5 TM cover of the Earth) are tiled on several parts (sheets or scenes respectively). According to hierarchy in ISO 19115, the definition of general metadata can be supplemented by spatially specific metadata that, when required, either inherits or overrides the general case (G.1.3). Annex H of this standard states that only metadata exceptions are defined at lower levels, so it is not necessary to generate the full registry of metadata for each level but to link particular values to the general value that they inherit. Conceptually the metadata

  15. Green synthesis of gold nanoparticles using Citrus fruits (Citrus limon, Citrus reticulata and Citrus sinensis) aqueous extract and its characterization.

    PubMed

    Sujitha, Mohanan V; Kannan, Soundarapandian

    2013-02-01

    This study reports the biological synthesis of gold nanoparticles by the reduction of HAuCl(4) by using citrus fruits (Citrus limon, Citrus reticulata and Citrus sinensis) juice extract as the reducing and stabilizing agent. A various shape and size of gold nanoparticles were formed when the ratio of the reactants were altered with respect to 1.0mM chloroauric acid solution. The gold nanoparticles obtained were characterized by UV-visible spectra, transmission electron microscopy (TEM) and X-ray diffraction (XRD). TEM studies showed the particles to be of various shapes and sizes and particle size ranges from 15 to 80 nm. Selected-area electron diffraction (SAED) pattern confirmed fcc phase and crystallinity of the particles. The X-ray diffraction analysis revealed the distinctive facets (111, 200, 220 and 222 planes) of gold nanoparticles. Dynamic light scattering (DLS) studies revealed that the average size for colloid gp(3) of C. limon, C. reticulata and C. sinensis are 32.2 nm, 43.4 nm and 56.7 nm respectively. The DLS graph showed that the particles size was larger and more polydispersed compared to the one observed by TEM due to the fact that the measured size also includes the bio-organic compounds enveloping the core of the Au NPs. Zeta potential value for gold nanoparticles obtained from colloid gp(3) of C. limon, C. reticulata and C. sinensis are -45.9, -37.9 and -31.4 respectively indicating the stability of the synthesized nanoparticles. Herein we propose a novel, previously unexploited method for the biological syntheses of polymorphic gold nanoparticles with potent biological applications.

  16. Green synthesis of gold nanoparticles using Citrus fruits (Citrus limon, Citrus reticulata and Citrus sinensis) aqueous extract and its characterization

    NASA Astrophysics Data System (ADS)

    Sujitha, Mohanan V.; Kannan, Soundarapandian

    2013-02-01

    This study reports the biological synthesis of gold nanoparticles by the reduction of HAuCl4 by using citrus fruits (Citrus limon, Citrus reticulata and Citrus sinensis) juice extract as the reducing and stabilizing agent. A various shape and size of gold nanoparticles were formed when the ratio of the reactants were altered with respect to 1.0 mM chloroauric acid solution. The gold nanoparticles obtained were characterized by UV-visible spectra, transmission electron microscopy (TEM) and X-ray diffraction (XRD). TEM studies showed the particles to be of various shapes and sizes and particle size ranges from 15 to 80 nm. Selected-area electron diffraction (SAED) pattern confirmed fcc phase and crystallinity of the particles. The X-ray diffraction analysis revealed the distinctive facets (1 1 1, 2 0 0, 2 2 0 and 2 2 2 planes) of gold nanoparticles. Dynamic light scattering (DLS) studies revealed that the average size for colloid gp3 of C. limon, C. reticulata and C. sinensis are 32.2 nm, 43.4 nm and 56.7 nm respectively. The DLS graph showed that the particles size was larger and more polydispersed compared to the one observed by TEM due to the fact that the measured size also includes the bio-organic compounds enveloping the core of the Au NPs. Zeta potential value for gold nanoparticles obtained from colloid gp3 of C. limon, C. reticulata and C. sinensis are -45.9, -37.9 and -31.4 respectively indicating the stability of the synthesized nanoparticles. Herein we propose a novel, previously unexploited method for the biological syntheses of polymorphic gold nanoparticles with potent biological applications.

  17. Informing and Evaluating a Metadata Initiative: Usability and Metadata Studies in Minnesota's "Foundations" Project.

    ERIC Educational Resources Information Center

    Quam, Eileen

    2001-01-01

    Explains Minnesota's Foundations Project, a multiagency collaboration to improve access to environmental and natural resources information. Discusses the use of the Dublin core metadata standard for Web resources and describes three studies that included needs assessment, Bridges Web site user interface, and usability of controlled vocabulary in…

  18. Hydrologic almanac of Florida

    USGS Publications Warehouse

    Heath, Richard C.; Conover, Clyde Stuart

    1981-01-01

    This first edition is a ready reference source of information on various facts and features about water in Florida. It is aimed primarily to help bust politicians, writers, agency officials, water managers, planners, consultants, educators, hydrologists, engineers, scientists, and the general public answer questions that arise on comparative and statistical aspects on the hydrology of Florida. It contains statistical comparative data, much of which was especially prepared for the almanac, a glossary of technical terms, tabular material, and conversion factors. Also included is a selective bibliography of 174 reports on water in Florida. (USGS)

  19. A standard for measuring metadata quality in spectral libraries

    NASA Astrophysics Data System (ADS)

    Rasaiah, B.; Jones, S. D.; Bellman, C.

    2013-12-01

    A standard for measuring metadata quality in spectral libraries Barbara Rasaiah, Simon Jones, Chris Bellman RMIT University Melbourne, Australia barbara.rasaiah@rmit.edu.au, simon.jones@rmit.edu.au, chris.bellman@rmit.edu.au ABSTRACT There is an urgent need within the international remote sensing community to establish a metadata standard for field spectroscopy that ensures high quality, interoperable metadata sets that can be archived and shared efficiently within Earth observation data sharing systems. Metadata are an important component in the cataloguing and analysis of in situ spectroscopy datasets because of their central role in identifying and quantifying the quality and reliability of spectral data and the products derived from them. This paper presents approaches to measuring metadata completeness and quality in spectral libraries to determine reliability, interoperability, and re-useability of a dataset. Explored are quality parameters that meet the unique requirements of in situ spectroscopy datasets, across many campaigns. Examined are the challenges presented by ensuring that data creators, owners, and data users ensure a high level of data integrity throughout the lifecycle of a dataset. Issues such as field measurement methods, instrument calibration, and data representativeness are investigated. The proposed metadata standard incorporates expert recommendations that include metadata protocols critical to all campaigns, and those that are restricted to campaigns for specific target measurements. The implication of semantics and syntax for a robust and flexible metadata standard are also considered. Approaches towards an operational and logistically viable implementation of a quality standard are discussed. This paper also proposes a way forward for adapting and enhancing current geospatial metadata standards to the unique requirements of field spectroscopy metadata quality. [0430] BIOGEOSCIENCES / Computational methods and data processing [0480

  20. The Metadata Coverage Index (MCI): A standardized metric for quantifying database metadata richness.

    PubMed

    Liolios, Konstantinos; Schriml, Lynn; Hirschman, Lynette; Pagani, Ioanna; Nosrat, Bahador; Sterk, Peter; White, Owen; Rocca-Serra, Philippe; Sansone, Susanna-Assunta; Taylor, Chris; Kyrpides, Nikos C; Field, Dawn

    2012-07-30

    Variability in the extent of the descriptions of data ('metadata') held in public repositories forces users to assess the quality of records individually, which rapidly becomes impractical. The scoring of records on the richness of their description provides a simple, objective proxy measure for quality that enables filtering that supports downstream analysis. Pivotally, such descriptions should spur on improvements. Here, we introduce such a measure - the 'Metadata Coverage Index' (MCI): the percentage of available fields actually filled in a record or description. MCI scores can be calculated across a database, for individual records or for their component parts (e.g., fields of interest). There are many potential uses for this simple metric: for example; to filter, rank or search for records; to assess the metadata availability of an ad hoc collection; to determine the frequency with which fields in a particular record type are filled, especially with respect to standards compliance; to assess the utility of specific tools and resources, and of data capture practice more generally; to prioritize records for further curation; to serve as performance metrics of funded projects; or to quantify the value added by curation. Here we demonstrate the utility of MCI scores using metadata from the Genomes Online Database (GOLD), including records compliant with the 'Minimum Information about a Genome Sequence' (MIGS) standard developed by the Genomic Standards Consortium. We discuss challenges and address the further application of MCI scores; to show improvements in annotation quality over time, to inform the work of standards bodies and repository providers on the usability and popularity of their products, and to assess and credit the work of curators. Such an index provides a step towards putting metadata capture practices and in the future, standards compliance, into a quantitative and objective framework.

  1. 7 CFR 319.56-38 - Citrus from Chile.

    Code of Federal Regulations, 2012 CFR

    2012-01-01

    ... 7 Agriculture 5 2012-01-01 2012-01-01 false Citrus from Chile. 319.56-38 Section 319.56-38... SERVICE, DEPARTMENT OF AGRICULTURE FOREIGN QUARANTINE NOTICES Fruits and Vegetables § 319.56-38 Citrus from Chile. Clementines (Citrus reticulata Blanco var. Clementine), mandarins (Citrus reticulata...

  2. 7 CFR 319.56-38 - Citrus from Chile.

    Code of Federal Regulations, 2014 CFR

    2014-01-01

    ... 7 Agriculture 5 2014-01-01 2014-01-01 false Citrus from Chile. 319.56-38 Section 319.56-38... SERVICE, DEPARTMENT OF AGRICULTURE FOREIGN QUARANTINE NOTICES Fruits and Vegetables § 319.56-38 Citrus from Chile. Clementines (Citrus reticulata Blanco var. Clementine), mandarins (Citrus reticulata...

  3. 7 CFR 319.56-38 - Citrus from Chile.

    Code of Federal Regulations, 2013 CFR

    2013-01-01

    ... 7 Agriculture 5 2013-01-01 2013-01-01 false Citrus from Chile. 319.56-38 Section 319.56-38... SERVICE, DEPARTMENT OF AGRICULTURE FOREIGN QUARANTINE NOTICES Fruits and Vegetables § 319.56-38 Citrus from Chile. Clementines (Citrus reticulata Blanco var. Clementine), mandarins (Citrus reticulata...

  4. Cooperation in the Conservation of Citrus Genetic Resources: Riverside, California

    Technology Transfer Automated Retrieval System (TEKTRAN)

    A consortium of cooperating programs for the conservation and utilization of citrus genetic resources is centered at the University of California, Riverside (UCR). University units include the Citrus Clonal Protection Program (CCPP), Citrus Variety Collection (CVC), and Citrus Breeding Program (CBP...

  5. A comparison of plant species for rearing Asian citrus psyllid

    Technology Transfer Automated Retrieval System (TEKTRAN)

    Five plant genotypes were compared with respect to Asian citrus psyllid (ACP) reproduction potential: Bergera koenigii, Citrus aurantiifolia, C. macrophylla, C. taiwanica and Murraya paniculata. Asian citrus psyllid reproduction is dependent on young flush and thus Asian citrus psyllid production po...

  6. Rapid cyling plant breeding in citrus

    Technology Transfer Automated Retrieval System (TEKTRAN)

    Resistance or tolerance to huanglongbing (HLB) and other important traits have been identified in several citrus types and relatives and associated markers should be identified soon. What is urgently needed in addition is an accelerated strategy for citrus variety breeding. Identification and use of...

  7. Functional analysis of block deesterified citrus pectins

    Technology Transfer Automated Retrieval System (TEKTRAN)

    After removal of soluble sugars and other compounds by washing, citrus peel is largely composed of pectin, cellulose and hemicellulose. In order to utilize the greatest amount of citrus peel product, it would appear reasonable that one or all three of these polysaccharides be converted to a useful ...

  8. Citrus Community College District Mentor Program.

    ERIC Educational Resources Information Center

    Hinds, Diane; Sprague, Caroline

    The Citrus College faculty and staff addressed the problem of lower career aspirations among women by establishing a support group, Citrus Women in Higher Education (CWHE). In addition to group meetings and special programs of interest, the CWHE has developed a mentor program to address the problem of blocked careers faced by women. The goals of…

  9. Resistance and tolerance to Huanglongbing in citrus

    Technology Transfer Automated Retrieval System (TEKTRAN)

    The Stover-led research team focuses on developing improved citrus scion varieties, through both conventional breeding and transgenics, with special attention to confronting the threat of citrus huanglongbing (HLB). Collaborations are underway with more than 20 research groups around the world to ha...

  10. Cryopreservation and Cryotherapy of Citrus Cultivars

    Technology Transfer Automated Retrieval System (TEKTRAN)

    Long-term conservation of Citrus clones can be accomplished by cryopreservation. Shoot tips will survive liquid nitrogen exposure and storage when appropriately desiccated and treated with cryoprotectant solutions. In our research, vegetative Citrus budwood is shipped from Riverside to Fort Collin...

  11. Conservation of citrus germplasm - an international survey

    Technology Transfer Automated Retrieval System (TEKTRAN)

    Citrus is an economically important tree fruit crop in many subtropical and tropical areas. Most cultivated species likely originated in Southern China, Northeast India and Southeast Asia. Many species are inter-fertile and some cultivated citrus types including sweet orange, lemon and grapefruit, ...

  12. MONITORING FLORIDA'S WATERS

    EPA Science Inventory

    GIS plays an important role as a management tool for the multi-dimensional Status Monitoring Network (SMN) program to monitor Florida's freshwater resources. By pulling together basin assessments, statistical analysis, surface water and groundwater analytical data, background is...

  13. Metadata in the Collaboratory for Multi-Scale Chemical Science

    SciTech Connect

    Pancerella, Carmen M.; Hewson, John; Koegler, Wendy S.; Leahy, David; Lee, Michael; Rahn, Larry; Yang, Christine; Myers, James D.; Didier, Brett T.; McCoy, Renata; Schuchardt, Karen L.; Stephan, Eric G.; Windus, Theresa L.; Amin, Kaizer; Bittner, Sandra; Lansing, Carina S.; Minkoff, Michael; Nijsure, Sandeep; von Laszewski, Gregor; Pinzon, Reinhardt; Ruscic, Branko; Wagner, Albert F.; Wang, Baoshan; Pitz, William; Ho, Yen-Ling; Montoya, David W.; Xu, Lili; Allison, Thomas C.; Green, William H.; Frenklach, Michael

    2003-10-02

    The goal of the Collaboratory for the Multi-scale Chemical Sciences (CMCS) [1] is to develop an informatics-based approach to synthesizing multi-scale chemistry information to create knowledge in the chemical sciences. CMCS is using a portal and metadata-aware content store as a base for building a system to support inter-domain knowledge exchange in chemical science. Key aspects of the system include configurable metadata extraction and translation, a core schema for scientific pedigree, and a suite of tools for managing data and metadata and visualizing pedigree relationships between data entries. CMCS metadata is represented using Dublin Core with metadata extensions that are useful to both the chemical science community and the science community in general. CMCS is working with several chemistry groups who are using the system to collaboratively assemble and analyze existing data to derive new chemical knowledge. In this paper we discuss the project’s metadata-related requirements, the relevant software infrastructure, core metadata schema, and tools that use the metadata to enhance science

  14. To Teach or Not to Teach: The Ethics of Metadata

    ERIC Educational Resources Information Center

    Barnes, Cynthia; Cavaliere, Frank

    2009-01-01

    Metadata is information about computer-generated documents that is often inadvertently transmitted to others. The problems associated with metadata have become more acute over time as word processing and other popular programs have become more receptive to the concept of collaboration. As more people become involved in the preparation of…

  15. Shared Geospatial Metadata Repository for Ontario University Libraries: Collaborative Approaches

    ERIC Educational Resources Information Center

    Forward, Erin; Leahey, Amber; Trimble, Leanne

    2015-01-01

    Successfully providing access to special collections of digital geospatial data in academic libraries relies upon complete and accurate metadata. Creating and maintaining metadata using specialized standards is a formidable challenge for libraries. The Ontario Council of University Libraries' Scholars GeoPortal project, which created a shared…

  16. PoroTomo Subtask 6.3 Nodal Seismometers Metadata

    SciTech Connect

    Lesley Parker

    2016-03-28

    Metadata for the nodal seismometer array deployed at the POROTOMO's Natural Laboratory in Brady Hot Spring, Nevada during the March 2016 testing. Metadata includes location and timing for each instrument as well as file lists of data to be uploaded in a separate submission.

  17. LACE: A Web-Based, Structured Editor for PDS Metadata

    NASA Astrophysics Data System (ADS)

    Rose, M.; Keller, R.; Sarram, P.

    2015-06-01

    PDS has moved to XML-based metadata, but many scientists are not familiar with XML and find its structure complicated. For these reasons, we have created LACE, an editor for PDS metadata that hides the complexity of XML from the user.

  18. Twiddlenet: Metadata Tagging and Data Dissemination in Mobile Device Networks

    DTIC Science & Technology

    2007-09-01

    METADATA TAGGING AND DATA DISSEMINATION IN MOBILE DEVICE NETWORKS by Christopher T. Clotfelter Jonathon E. Towle September 2007 Thesis...Metadata Tagging and Data Dissemination in Mobile Device Networks 6. AUTHOR(S) Clotfelter, Christopher T. Towle , Jonathon E. 5. FUNDING NUMBERS 7...DISSEMINATION IN MOBILE DEVICE NETWORKS Jonathan E. Towle Captain, United States Maine Corps B.S., California State University Humboldt

  19. Embedding and retrieving private metadata in electrocardiograms.

    PubMed

    Kozat, Suleyman S; Vlachos, Michail; Lucchese, Claudio; Van Herle, Helga; Yu, Philip S

    2009-08-01

    Due to the recent explosion of 'identity theft' cases, the safeguarding of private data has been the focus of many scientific efforts. Medical data contain a number of sensitive attributes, whose access the rightful owner would ideally like to disclose only to authorized personnel. One way of providing limited access to sensitive data is through means of encryption. In this work we follow a different path, by proposing the fusion of the sensitive metadata within the medical data. Our work is focused on medical time-series signals and in particular on Electrocardiograms (ECG). We present techniques that allow the embedding and retrieval of sensitive numerical data, such as the patient's social security number or birth date, within the medical signal. The proposed technique not only allows the effective hiding of the sensitive metadata within the signal itself, but it additionally provides a way of authenticating the data ownership or providing assurances about the origin of the data. Our methodology builds upon watermarking notions, and presents the following desirable characteristics: (a) it does not distort important ECG characteristics, which are essential for proper medical diagnosis, (b) it allows not only the embedding but also the efficient retrieval of the embedded data, (c) it provides resilience and fault tolerance by employing multistage watermarks (both robust and fragile). Our experiments on real ECG data indicate the viability of the proposed scheme.

  20. Astronomy Visualization Metadata (AVM) in Action!

    NASA Astrophysics Data System (ADS)

    Hurt, Robert L.; Gauthier, A.; Christensen, L. L.; Wyatt, R.

    2009-12-01

    The Astronomy Visualization Metadata (AVM) standard offers a flexible way of embedding extensive information about an astronomical image, illustration, or photograph within the image file itself. Such information includes a spread of basic info including title, caption, credit, and subject (based on a taxonomy optimized for outreach needs). Astronomical images may also be fully tagged with color assignments (associating wavelengths/observatories to colors in the image) and coordinate projection information. Here we present a status update on current ongoing projects utilizing AVM. Ongoing tagging efforts include a variety of missions and observers (including Spitzer, Chandra, Hubble, and amateurs), and the metadata is serving as a database schema for content-managed website development (Spitzer). Software packages are utilizing AVM coordinate headers to allow images to be tagged (FITS Liberator) and correctly registered against the sky backdrop on import (e.g. WorldWide Telescope, Google Sky). Museums and planetariums are exploring the use of AVM contextual information to enrich the presentation of images (partners include the American Museum of Natural History and the California Academy of Sciences). Astronomical institutions are adopting the AVM standard (e.g. IVOA) and planning services to embed and catalog AVM-tagged images (IRSA/VAMP, Aladin). More information is available at www.virtualastronomy.org

  1. SPASE, Metadata, and the Heliophysics Virtual Observatories

    NASA Technical Reports Server (NTRS)

    Thieman, James; King, Todd; Roberts, Aaron

    2010-01-01

    To provide data search and access capability in the field of Heliophysics (the study of the Sun and its effects on the Solar System, especially the Earth) a number of Virtual Observatories (VO) have been established both via direct funding from the U.S. National Aeronautics and Space Administration (NASA) and through other funding agencies in the U.S. and worldwide. At least 15 systems can be labeled as Virtual Observatories in the Heliophysics community, 9 of them funded by NASA. The problem is that different metadata and data search approaches are used by these VO's and a search for data relevant to a particular research question can involve consulting with multiple VO's - needing to learn a different approach for finding and acquiring data for each. The Space Physics Archive Search and Extract (SPASE) project is intended to provide a common data model for Heliophysics data and therefore a common set of metadata for searches of the VO's. The SPASE Data Model has been developed through the common efforts of the Heliophysics Data and Model Consortium (HDMC) representatives over a number of years. We currently have released Version 2.1 of the Data Model. The advantages and disadvantages of the Data Model will be discussed along with the plans for the future. Recent changes requested by new members of the SPASE community indicate some of the directions for further development.

  2. Citrus quarantine, sanitary and certification programs in the USA. Prevention of introduction and distribution of citrus diseases

    Technology Transfer Automated Retrieval System (TEKTRAN)

    Citrus germplasm originated in Australasia, the Far East, and Africa, thus all citrus grown in the New World was imported. This importation of citrus also resulted in importation of graft transmissible pathogens of citrus, many of which are latent in their original host but can cause epidemics of t...

  3. Antennal and behavioral response of the Asian citrus psyllid (Diaphorina citri Kuwayama) to degradation products of citrus volatiles

    Technology Transfer Automated Retrieval System (TEKTRAN)

    Asian citrus psyllid, Diaphorina citri Kuwayama (Hemiptera: Liviidae) vectors the bacterial causal pathogen of the deadly citrus disease, Huanglongbing (citrus greening) which is a major threat to citrus industry worldwide. We studied antennal and behavioral responses to principal components of head...

  4. Tolerance of the trifoliate citrus hybrid US-897 (Citrus reticulata Blanco x Poncirus trifoliata L. Raf.) to Huanglongbing

    Technology Transfer Automated Retrieval System (TEKTRAN)

    Huanglongbing (HLB) is a destructive disease of citrus in most citrus-producing countries worldwide. The disease, presumably caused by phloem-limited bacteria of the genus Candidatus Liberibacter, affects all known citrus species and citrus relatives with little known resistance. Typical disease s...

  5. Florida and the Bahamas

    NASA Technical Reports Server (NTRS)

    1991-01-01

    In this view of the Florida peninsula and the Bahamas (28.5N, 80.0W), the Bahamas are easily identified from orbit because of the vivid blue colors of the shallow Bahama Banks and dark blues of the ocean depths. The Florida peninsula is completely silhoutted by cumulus clouds except for the cloud hole over Lake Okeechobee. The rest of the U.S. Gulf Coast and eastern seaboard is completely obscured by the clouds of an approaching winter front.

  6. EXIF Custom: Automatic image metadata extraction for Scratchpads and Drupal.

    PubMed

    Baker, Ed

    2013-01-01

    Many institutions and individuals use embedded metadata to aid in the management of their image collections. Many deskop image management solutions such as Adobe Bridge and online tools such as Flickr also make use of embedded metadata to describe, categorise and license images. Until now Scratchpads (a data management system and virtual research environment for biodiversity) have not made use of these metadata, and users have had to manually re-enter this information if they have wanted to display it on their Scratchpad site. The Drupal described here allows users to map metadata embedded in their images to the associated field in the Scratchpads image form using one or more customised mappings. The module works seamlessly with the bulk image uploader used on Scratchpads and it is therefore possible to upload hundreds of images easily with automatic metadata (EXIF, XMP and IPTC) extraction and mapping.

  7. Interpreting the ASTM 'content standard for digital geospatial metadata'

    USGS Publications Warehouse

    Nebert, Douglas D.

    1996-01-01

    ASTM and the Federal Geographic Data Committee have developed a content standard for spatial metadata to facilitate documentation, discovery, and retrieval of digital spatial data using vendor-independent terminology. Spatial metadata elements are identifiable quality and content characteristics of a data set that can be tied to a geographic location or area. Several Office of Management and Budget Circulars and initiatives have been issued that specify improved cataloguing of and accessibility to federal data holdings. An Executive Order further requires the use of the metadata content standard to document digital spatial data sets. Collection and reporting of spatial metadata for field investigations performed for the federal government is an anticipated requirement. This paper provides an overview of the draft spatial metadata content standard and a description of how the standard could be applied to investigations collecting spatially-referenced field data.

  8. Guangdong and Florida populations of 'Candidatus Liberibacter asiaticus' distinguished by a genomic locus with short tandem repeats.

    PubMed

    Chen, J; Deng, X; Sun, X; Jones, D; Irey, M; Civerolo, E

    2010-06-01

    Huanglongbing (HLB) (yellow shoot disease) is a highly destructive disease that threatens citrus production worldwide. The disease was first observed in Guangdong, P.R. China, over 100 years ago, and was found in Florida, United States, in 2005. 'Candidatus Liberibacter asiaticus' has been associated with HLB in many citrus-growing regions around the world, including Guangdong and Florida. The global epidemiology of HLB, as well as management of the disease, relies on knowledge of 'Ca. L. asiaticus' populations in different geographical regions around the world. In this study, we identified a genetic marker containing small tandem repeats in the genome of 'Ca. L. asiaticus' and comparatively analyzed the tandem repeat numbers (TRNs) in 'Ca. L. asiaticus' populations from Guangdong and Florida. Analyses of TRNs showed that the bacterial population in Guangdong was different from that in Florida. The Guangdong population consisted predominately of strains with a TRN of 7 (TRN(7)) at a frequency of 47.6%. The Florida population consisted predominately of strains with a TRN of 5 (TRN(5)) at a frequency of 84.4%. TRNs ranged from 3 to 16. The apparent absence of TRNs of 9, 10, 11, and 12 separated the bacterial strains into two groups: TRNs < 10 (TRN(<10)) and TRNs > 10 (TRN(>10)). In Florida, TRN(<10) strains (103/109, or 94.5%) were widely distributed in all HLB-affected counties. TRN(>10) strains (6/109, or 5.5%) were found in central Florida. This is the first report documenting the differentiation of 'Ca. L. asiaticus' populations between Asia and North America and the possible presence of two differentially distributed genotypes of 'Ca. L. asiaticus' in Florida.

  9. The WRKY Transcription Factor Family in Citrus: Valuable and Useful Candidate Genes for Citrus Breeding.

    PubMed

    Ayadi, M; Hanana, M; Kharrat, N; Merchaoui, H; Marzoug, R Ben; Lauvergeat, V; Rebaï, A; Mzid, R

    2016-10-01

    WRKY transcription factors belong to a large family of plant transcriptional regulators whose members have been reported to be involved in a wide range of biological roles including plant development, adaptation to environmental constraints and response to several diseases. However, little or poor information is available about WRKY's in Citrus. The recent release of completely assembled genomes sequences of Citrus sinensis and Citrus clementina and the availability of ESTs sequences from other citrus species allowed us to perform a genome survey for Citrus WRKY proteins. In the present study, we identified 100 WRKY members from C. sinensis (51), C. clementina (48) and Citrus unshiu (1), and analyzed their chromosomal distribution, gene structure, gene duplication, syntenic relation and phylogenetic analysis. A phylogenetic tree of 100 Citrus WRKY sequences with their orthologs from Arabidopsis has distinguished seven groups. The CsWRKY genes were distributed across all ten sweet orange chromosomes. A comprehensive approach and an integrative analysis of Citrus WRKY gene expression revealed variable profiles of expression within tissues and stress conditions indicating functional diversification. Thus, candidate Citrus WRKY genes have been proposed as potentially involved in fruit acidification, essential oil biosynthesis and abiotic/biotic stress tolerance. Our results provided essential prerequisites for further WRKY genes cloning and functional analysis with an aim of citrus crop improvement.

  10. Detection of citrus Huanglongbing by Fourier transform infrared-attenuated total reflection spectroscopy.

    PubMed

    Hawkins, Samantha A; Park, Bosoon; Poole, Gavin H; Gottwald, Timothy; Windham, William R; Lawrence, Kurt C

    2010-01-01

    Citrus Huanglongbing (HLB, also known as citrus greening disease) was discovered in Florida in 2005 and is spreading rapidly amongst the citrus growing regions of the state. Detection via visual symptoms of the disease is not a long-term viable option. New techniques are being developed to test for the disease in its earlier presymptomatic stages. Fourier transform infrared-attenuated total reflection (FT-IR-ATR) spectroscopy is a candidate for rapid, inexpensive, early detection of the disease. The mid-infrared region of the spectrum reveals dramatic changes that take place in the infected leaves when compared to healthy non-infected leaves. The carbohydrates that give rise to peaks in the 900-1180 cm(-1) range are reliable in distinguishing leaves from infected plants versus non-infected plants. A model based on chemometrics was developed using the spectra from 179 plants of known disease status. This model then correctly predicted the status of >95% of the plants tested.

  11. Sequences of Citrus tristeza virus separated in time and space are essentially identical.

    PubMed

    Albiach-Martí, M R; Mawassi, M; Gowda, S; Satyanarayana, T; Hilf, M E; Shanker, S; Almira, E C; Vives, M C; López, C; Guerri, J; Flores, R; Moreno, P; Garnsey, S M; Dawson, W O

    2000-08-01

    The first Citrus tristeza virus (CTV) genomes completely sequenced (19.3-kb positive-sense RNA), from four biologically distinct isolates, are unexpectedly divergent in nucleotide sequence (up to 60% divergence). Understanding of whether these large sequence differences resulted from recent evolution is important for the design of disease management strategies, particularly the use of genetically engineered mild (essentially symptomless)-strain cross protection and RNA-mediated transgenic resistance. The complete sequence of a mild isolate (T30) which has been endemic in Florida for about a century was found to be nearly identical to the genomic sequence of a mild isolate (T385) from Spain. Moreover, samples of sequences of other isolates from distinct geographic locations, maintained in different citrus hosts and also separated in time (B252 from Taiwan, B272 from Colombia, and B354 from California), were nearly identical to the T30 sequence. The sequence differences between these isolates were within or near the range of variability of the T30 population. A possible explanation for these results is that the parents of isolates T30, T385, B252, B272, and B354 have a common origin, probably Asia, and have changed little since they were dispersed throughout the world by the movement of citrus. Considering that the nucleotide divergence among the other known CTV genomes is much greater than those expected for strains of the same virus, the remarkable similarity of these five isolates indicates a high degree of evolutionary stasis in some CTV populations.

  12. Annotation of the Asian citrus psyllid genome reveals a reduced innate immune system

    Technology Transfer Automated Retrieval System (TEKTRAN)

    Citrus production worldwide is currently facing significant losses due to citrus greening disease, also known as huanglongbing. The citrus greening bacteria, Candidatus Liberibacter asiaticus (CLas), is a persistent propagative pathogen transmitted by the Asian citrus psyllid, Diaphorina citri Kuway...

  13. Citrus leprosis virus vectored by Brevipalpus phoenicis (Acari: Tenuipalpidae) on citrus in Brazil.

    PubMed

    Rodrigues, J C V; Kitajima, E W; Childers, C C; Chagas, C M

    2003-01-01

    Citrus leprosis is caused by Citrus leprosis virus (CiLV) that is transmitted by mites in the genus Brevipalpus (Acari: Tenuipalpidae). This disease directly reduces production and the life span of the citrus plant. The main symptoms of the disease include lesions on fruits, leaves, and twigs or small branches, causing premature fruit drop, defoliation, and death of the twigs or branches leading to serious tree decline. Leprosis is a highly destructive disease of citrus, wherever it occurs. The Brazilian citrus industry spends over 100 million US dollars annually on acaricides to control the vector, Brevipalpus phoenicis (Geijskes). This review contains information about the history of the etiology of citrus leprosis, its geographical distribution, host range, the role of the mite vectors, viral morphology and relationships with the infected cell, and transmissibility of the virus by the mite. In addition, data on the mite-virus-plant relationship, disease damage, and strategies for controlling disease spread are presented.

  14. Chipping citrus wood for gasifiction

    SciTech Connect

    Churchill, D.B.; Hedden, S.L.; Whitney, J.D.; Shaw, L.N.

    1984-01-01

    Both green and dead citrus trees were used for chipping. Chip moisture content, fuel analysis, drying time, and data on fuel/tonne of chips were obtained. The average moisture contents of green and dead trees when chipped were 25% and 16% (wet basis) respectively. Chips were sized to a minimum of 0.32 squared cm x 0.32 cm thick to a maximum of 5.0 cm squared x 0.32 cm thick and normally required 4 weeks to air dry to 14% (wet basis) moisture content before use. Approximately 50% of the total tree by weight could be made into usable chips. 9 references.

  15. Citrus breeding, genetics and genomics in Japan

    PubMed Central

    Omura, Mitsuo; Shimada, Takehiko

    2016-01-01

    Citrus is one of the most cultivated fruits in the world, and satsuma mandarin (Citrus unshiu Marc.) is a major cultivated citrus in Japan. Many excellent cultivars derived from satsuma mandarin have been released through the improvement of mandarins using a conventional breeding method. The citrus breeding program is a lengthy process owing to the long juvenility, and it is predicted that marker-assisted selection (MAS) will overcome the obstacle and improve the efficiency of conventional breeding methods. To promote citrus molecular breeding in Japan, a genetic mapping was initiated in 1987, and the experimental tools and resources necessary for citrus functional genomics have been developed in relation to the physiological analysis of satsuma mandarin. In this paper, we review the progress of citrus breeding and genome researches in Japan and report the studies on genetic mapping, expression sequence tag cataloguing, and molecular characterization of breeding characteristics, mainly in terms of the metabolism of bio-functional substances as well as factors relating to, for example, fruit quality, disease resistance, polyembryony, and flowering. PMID:27069387

  16. CIBMAN: Database exploring Citrus biodiversity of Manipur

    PubMed Central

    Sanabam, Rakesh; Somkuwar, Bharat Gopalrao; Thingnam, Gourshyam; Moirangthem, Sila; Handique, Pratap Jyoti; Huidrom, Sunitibala

    2012-01-01

    The rich wealth of Citrus genetic resources makes India to enjoy a remarkable position in the “Citrus belt of the world”. We have developed CIBMAN, a unique database on Citrus biodiversity of Manipur which comprises 33 accessions collected through extensive survey for more than three years. CIBMAN provides integrated access to Citrus species through sophisticated web interface which has following capabilities a) morphological details, b) socio-economic details, c) taxonomic details and d) geographical distribution. Morphological variability among Citrus accessions is due to variance in their genome which contributes to diverse agronomical traits and diverse bioactive compounds of high value. This diverse gene pool can be potential source for genetic improvement of existing cultivars and rootstocks. Systematic collection, characterization and conservation of the underutilized or lesser exploited varieties is required for incorporating in breeding program and conserve the germplasm from ever going on genetic erosion. This database will be useful for scientific validations and updating of traditional wisdom in bioprospecting aspects especially industrialization of Citrus found in the state. Further, the features will be suited for detailed investigation on potential medicinal and edible Citrus that make CIBMAN a powerful tool for sustainable management. Availability http://ibsd.gov.in/cibman PMID:23139595

  17. Meta-data based mediator generation

    SciTech Connect

    Critchlaw, T

    1998-06-28

    Mediators are a critical component of any data warehouse; they transform data from source formats to the warehouse representation while resolving semantic and syntactic conflicts. The close relationship between mediators and databases requires a mediator to be updated whenever an associated schema is modified. Failure to quickly perform these updates significantly reduces the reliability of the warehouse because queries do not have access to the most current data. This may result in incorrect or misleading responses, and reduce user confidence in the warehouse. Unfortunately, this maintenance may be a significant undertaking if a warehouse integrates several dynamic data sources. This paper describes a meta-data framework, and associated software, designed to automate a significant portion of the mediator generation task and thereby reduce the effort involved in adapting to schema changes. By allowing the DBA to concentrate on identifying the modifications at a high level, instead of reprogramming the mediator, turnaround time is reduced and warehouse reliability is improved.

  18. Semantic Metadata for Heterogeneous Spatial Planning Documents

    NASA Astrophysics Data System (ADS)

    Iwaniak, A.; Kaczmarek, I.; Łukowicz, J.; Strzelecki, M.; Coetzee, S.; Paluszyński, W.

    2016-09-01

    Spatial planning documents contain information about the principles and rights of land use in different zones of a local authority. They are the basis for administrative decision making in support of sustainable development. In Poland these documents are published on the Web according to a prescribed non-extendable XML schema, designed for optimum presentation to humans in HTML web pages. There is no document standard, and limited functionality exists for adding references to external resources. The text in these documents is discoverable and searchable by general-purpose web search engines, but the semantics of the content cannot be discovered or queried. The spatial information in these documents is geographically referenced but not machine-readable. Major manual efforts are required to integrate such heterogeneous spatial planning documents from various local authorities for analysis, scenario planning and decision support. This article presents results of an implementation using machine-readable semantic metadata to identify relationships among regulations in the text, spatial objects in the drawings and links to external resources. A spatial planning ontology was used to annotate different sections of spatial planning documents with semantic metadata in the Resource Description Framework in Attributes (RDFa). The semantic interpretation of the content, links between document elements and links to external resources were embedded in XHTML pages. An example and use case from the spatial planning domain in Poland is presented to evaluate its efficiency and applicability. The solution enables the automated integration of spatial planning documents from multiple local authorities to assist decision makers with understanding and interpreting spatial planning information. The approach is equally applicable to legal documents from other countries and domains, such as cultural heritage and environmental management.

  19. Achieving interoperability for metadata registries using comparative object modeling.

    PubMed

    Park, Yu Rang; Kim, Ju Han

    2010-01-01

    Achieving data interoperability between organizations relies upon agreed meaning and representation (metadata) of data. For managing and registering metadata, many organizations have built metadata registries (MDRs) in various domains based on international standard for MDR framework, ISO/IEC 11179. Following this trend, two pubic MDRs in biomedical domain have been created, United States Health Information Knowledgebase (USHIK) and cancer Data Standards Registry and Repository (caDSR), from U.S. Department of Health & Human Services and National Cancer Institute (NCI), respectively. Most MDRs are implemented with indiscriminate extending for satisfying organization-specific needs and solving semantic and structural limitation of ISO/IEC 11179. As a result it is difficult to address interoperability among multiple MDRs. In this paper, we propose an integrated metadata object model for achieving interoperability among multiple MDRs. To evaluate this model, we developed an XML Schema Definition (XSD)-based metadata exchange format. We created an XSD-based metadata exporter, supporting both the integrated metadata object model and organization-specific MDR formats.

  20. Design and Implementation of a Metadata-rich File System

    SciTech Connect

    Ames, S; Gokhale, M B; Maltzahn, C

    2010-01-19

    Despite continual improvements in the performance and reliability of large scale file systems, the management of user-defined file system metadata has changed little in the past decade. The mismatch between the size and complexity of large scale data stores and their ability to organize and query their metadata has led to a de facto standard in which raw data is stored in traditional file systems, while related, application-specific metadata is stored in relational databases. This separation of data and semantic metadata requires considerable effort to maintain consistency and can result in complex, slow, and inflexible system operation. To address these problems, we have developed the Quasar File System (QFS), a metadata-rich file system in which files, user-defined attributes, and file relationships are all first class objects. In contrast to hierarchical file systems and relational databases, QFS defines a graph data model composed of files and their relationships. QFS incorporates Quasar, an XPATH-extended query language for searching the file system. Results from our QFS prototype show the effectiveness of this approach. Compared to the de facto standard, the QFS prototype shows superior ingest performance and comparable query performance on user metadata-intensive operations and superior performance on normal file metadata operations.

  1. Metadata Creation, Management and Search System for your Scientific Data

    NASA Astrophysics Data System (ADS)

    Devarakonda, R.; Palanisamy, G.

    2012-12-01

    Mercury Search Systems is a set of tools for creating, searching, and retrieving of biogeochemical metadata. Mercury toolset provides orders of magnitude improvements in search speed, support for any metadata format, integration with Google Maps for spatial queries, multi-facetted type search, search suggestions, support for RSS (Really Simple Syndication) delivery of search results, and enhanced customization to meet the needs of the multiple projects that use Mercury. Mercury's metadata editor provides a easy way for creating metadata and Mercury's search interface provides a single portal to search for data and information contained in disparate data management systems, each of which may use any metadata format including FGDC, ISO-19115, Dublin-Core, Darwin-Core, DIF, ECHO, and EML. Mercury harvests metadata and key data from contributing project servers distributed around the world and builds a centralized index. The search interfaces then allow the users to perform a variety of fielded, spatial, and temporal searches across these metadata sources. This centralized repository of metadata with distributed data sources provides extremely fast search results to the user, while allowing data providers to advertise the availability of their data and maintain complete control and ownership of that data. Mercury is being used more than 14 different projects across 4 federal agencies. It was originally developed for NASA, with continuing development funded by NASA, USGS, and DOE for a consortium of projects. Mercury search won the NASA's Earth Science Data Systems Software Reuse Award in 2008. References: R. Devarakonda, G. Palanisamy, B.E. Wilson, and J.M. Green, "Mercury: reusable metadata management data discovery and access system", Earth Science Informatics, vol. 3, no. 1, pp. 87-94, May 2010. R. Devarakonda, G. Palanisamy, J.M. Green, B.E. Wilson, "Data sharing and retrieval using OAI-PMH", Earth Science Informatics DOI: 10.1007/s12145-010-0073-0, (2010);

  2. A Pan-European and Cross-Discipline Metadata Portal

    NASA Astrophysics Data System (ADS)

    Widmann, Heinrich; Thiemann, Hannes; Lautenschlager, Michael

    2014-05-01

    In recent years, significant investments have been made to create a pan-European e-infrastructure supporting multiple and diverse research communities. This led to the establishment of the community-driven European Data Infrastructure (EUDAT) project that implements services to tackle the specific challenges of international and interdisciplinary research data management. The EUDAT metadata service B2FIND plays a central role in this context as a repository and a search portal for the diverse metadata collected from heterogeneous sources. For this we built up a comprehensive joint metadata catalogue and an open data portal and offer support for new communities interested in publishing their data within EUDAT. The implemented metadata ingestion workflow consists in three steps. First the metadata records - provided either by various research communities or via other EUDAT services - are harvested. Afterwards the raw metadata records are converted and mapped to unified key-value dictionaries. The semantic mapping of the non-uniform community specific metadata to homogenous structured datasets is hereby the most subtle and challenging task. Finally the mapped records are uploaded as datasets to the catalogue and displayed in the portal. The homogenisation of the different community specific data models and vocabularies enables not only the unique presentation of these datasets as tables of field-value pairs but also the faceted, spatial and temporal search in the B2FIND metadata portal. Furthermore the service provides transparent access to the scientific data objects through the given references in the metadata. We present here the functionality and the features of the B2FIND service and give an outlook of further developments.

  3. Characterization of the Asian Citrus Psyllid Transcriptome

    PubMed Central

    Reese, Justin; Christenson, Matthew K.; Leng, Nan; Saha, Surya; Cantarel, Brandi; Lindeberg, Magdalen; Tamborindeguy, Cecilia; MacCarthy, Justin; Weaver, Daniel; Trease, Andrew J.; Ready, Steven V.; Davis, Vincent M.; McCormick, Courtney; Haudenschild, Christian; Han, Shunsheng; Johnson, Shannon L.; Shelby, Kent S.; Huang, Hong; Bextine, Blake R.; Shatters, Robert G.; Hall, David G.; Davis, Paul H.; Hunter, Wayne B.

    2014-01-01

    The Asian citrus psyllid, Diaphorina citri Kuwayama (Hemiptera: Psyllidae) is a vector for the causative agents of Huanglongbing, which threatens citrus production worldwide. This study reports and discusses the first D. citri transcriptomes, encompassing the three main life stages of D. citri, egg, nymph and adult. The transcriptomes were annotated using Gene Ontology (GO) and insecticide-related genes within each life stage were identified to aid the development of future D. citri insecticides. Transcriptome assemblies and other sequence data are available for download at the International Asian Citrus Psyllid Genome Consortium website [http://psyllid.org/download] and at NCBI [http://www.ncbi.nlm.nih.gov/bioproject/29447]. PMID:24511328

  4. Publishing NASA Metadata as Linked Open Data for Semantic Mashups

    NASA Astrophysics Data System (ADS)

    Manipon, G. M.; Wilson, B. D.; Hua, H.

    2013-12-01

    Data providers are now publishing more metadata in more interoperable forms, e.g. Atom/RSS ';casts', as Linked Open Data (LOD), or as ISO Metadata records. A major effort on the part of the NASA's Earth Science Data and Information System (ESDIS) project is the aggregation of metadata that enables greater data interoperability among scientific data sets regardless of source or application. Both the Earth Observing System (EOS) ClearingHOuse (ECHO) and the Global Change Master Directory (GCMD) repositories contain metadata records for NASA (and other) datasets and provided services. These records contain typical fields for each dataset (or software service) such as the source, creation date, cognizant institution, related access URL's, and domain & variable keywords to enable discovery. Under a NASA ACCESS grant, we demonstrated how to publish the ECHO and GCMD dataset and services metadata as LOD in the RDF format. Both sets of metadata are now queryable at SPARQL endpoints and available for integration into 'semantic mashups' in the browser. It is straightforward to transform sets of XML metadata, including ISO 19139, into simple RDF and then later refine and improve the RDF predicates by reusing known namespaces such as Dublin Core, GeoRSS, etc. All scientific metadata should be part of the LOD world. In addition, we developed an 'instant' drill-down and browse interface that provides faceted navigation so that the user can discover and explore the 25,000 datasets and 3000 services. Figure 1 shows the first version of the interface for 'instant drill down' into the ECHO datasets. The available facets and the free-text search box appear in the left panel, and the instantly updated results for the dataset search appear in the right panel. The user can constrain the value of a metadata facet simply by clicking on a word (or phrase) in the 'word cloud' of values for each facet. The display section for each dataset includes the important metadata fields, a full

  5. Publishing NASA Metadata as Linked Open Data for Semantic Mashups

    NASA Astrophysics Data System (ADS)

    Wilson, Brian; Manipon, Gerald; Hua, Hook

    2014-05-01

    Data providers are now publishing more metadata in more interoperable forms, e.g. Atom or RSS 'casts', as Linked Open Data (LOD), or as ISO Metadata records. A major effort on the part of the NASA's Earth Science Data and Information System (ESDIS) project is the aggregation of metadata that enables greater data interoperability among scientific data sets regardless of source or application. Both the Earth Observing System (EOS) ClearingHOuse (ECHO) and the Global Change Master Directory (GCMD) repositories contain metadata records for NASA (and other) datasets and provided services. These records contain typical fields for each dataset (or software service) such as the source, creation date, cognizant institution, related access URL's, and domain and variable keywords to enable discovery. Under a NASA ACCESS grant, we demonstrated how to publish the ECHO and GCMD dataset and services metadata as LOD in the RDF format. Both sets of metadata are now queryable at SPARQL endpoints and available for integration into "semantic mashups" in the browser. It is straightforward to reformat sets of XML metadata, including ISO, into simple RDF and then later refine and improve the RDF predicates by reusing known namespaces such as Dublin core, georss, etc. All scientific metadata should be part of the LOD world. In addition, we developed an "instant" drill-down and browse interface that provides faceted navigation so that the user can discover and explore the 25,000 datasets and 3000 services. The available facets and the free-text search box appear in the left panel, and the instantly updated results for the dataset search appear in the right panel. The user can constrain the value of a metadata facet simply by clicking on a word (or phrase) in the "word cloud" of values for each facet. The display section for each dataset includes the important metadata fields, a full description of the dataset, potentially some related URL's, and a "search" button that points to an Open

  6. Metadata Evaluation and Improvement: Evolving Analysis and Reporting

    NASA Technical Reports Server (NTRS)

    Habermann, Ted; Kozimor, John; Gordon, Sean

    2017-01-01

    ESIP Community members create and manage a large collection of environmental datasets that span multiple decades, the entire globe, and many parts of the solar system. Metadata are critical for discovering, accessing, using and understanding these data effectively and ESIP community members have successfully created large collections of metadata describing these data. As part of the White House Big Earth Data Initiative (BEDI), ESDIS has developed a suite of tools for evaluating these metadata in native dialects with respect to recommendations from many organizations. We will describe those tools and demonstrate evolving techniques for sharing results with data providers.

  7. The Design of Metadata for the Digital Museum Initiative in Taiwan.

    ERIC Educational Resources Information Center

    Chen, Chao-chen; Chen, Hsueh-hua; Chen, Kuang-hua; Hsiang, Jieh

    2002-01-01

    Discusses issues related to the development of metadata in Taiwan. Describes the development process of a Chinese metadata system, Metadata Interchange for Chinese Information (MICI), and an XML/metadata management system, Metalogy, both of which were developed under the Digital Museum Initiative sponsored by the National Science Council of…

  8. Forum Guide to Metadata: The Meaning behind Education Data. NFES 2009-805

    ERIC Educational Resources Information Center

    National Forum on Education Statistics, 2009

    2009-01-01

    The purpose of this guide is to empower people to more effectively use data as information. To accomplish this, the publication explains what metadata are; why metadata are critical to the development of sound education data systems; what components comprise a metadata system; what value metadata bring to data management and use; and how to…

  9. Sugarcane Variety Census: Florida 2010

    Technology Transfer Automated Retrieval System (TEKTRAN)

    The Florida sugarcane industry produces about 25% of all sugar produced in the U.S. Varieties originate from two sources, a private breeding and selection program of the United States Sugar Corporation in Clewiston, Florida and a public program at Canal Point, Florida supported by the USDA-Agricultu...

  10. Sugarcane Variety Census: Florida 2008

    Technology Transfer Automated Retrieval System (TEKTRAN)

    The Florida sugarcane industry produces about 25% of all sugar produced in the U.S. Varieties originate from two sources, a private breeding and selection program of the United States Sugar Corporation in Clewiston, Florida and a public program at Canal Point, Florida supported by the USDA-Agricultu...

  11. Sugarcane Variety Census: Florida 2007

    Technology Transfer Automated Retrieval System (TEKTRAN)

    The Florida sugarcane industry produces about 25% of all sugar produced in the U.S. Varieties originate from two sources, a private breeding and selection program of the United States Sugar Corporation in Clewiston, Florida and a public program at Canal Point, Florida supported by the USDA-Agricultu...

  12. EBM metadata based on Dublin Core better presenting validity of clinical trials.

    PubMed

    Xu, Wei; Okada, Mihoko

    2007-10-01

    To help clinicians find better evidence, a metadata schema for Evidence Based Medicine (EBM) is developed. Dublin Core metadata standard (DC) was adopted to help build a metadata schema. An experimental system was developed to test the validity of the metadata and full text papers of clinical therapy on stomach ulcer extracted using PubMed. An EBM metadata schema was developed. Citations were created from original papers using the metadata schema. Three clinicians evaluated papers by utilizing metadata and full texts respectively. Agreement of evaluation was analyzed, and the result on weighted kappa was 0.55 (95% CI, 0.42-0.67). It reveals that there is moderate agreement between evaluation of metadata citations and full texts. It is possible to use the metadata to select papers before reading the full texts. A further study should be made to prove the applicability of the metadata in the real world setting.

  13. Freshwater mussels of Florida

    USGS Publications Warehouse

    Williams, James D.; Butler, Robert S.; Warren, Gary L.; Johnson, Nathan A.

    2014-01-01

    An exhaustive guide to all aspects of the freshwater mussel fauna in Florida,Freshwater Mussels of Florida covers the ecology, biology, distribution, and conservation of the many species of bivalve mollusks in the Sunshine State. In the past three decades, researchers, the public, businesses that depend on wildlife, and policy makers have given more attention to the threatened natural diversity of the Southeast, including freshwater mussels. This compendium meets the increasingly urgent need to catalog this imperiled group of aquatic organisms in the United States.

  14. Metadata and Service at the GFZ ISDC Portal

    NASA Astrophysics Data System (ADS)

    Ritschel, B.

    2008-05-01

    The online service portal of the GFZ Potsdam Information System and Data Center (ISDC) is an access point for all manner of geoscientific geodata, its corresponding metadata, scientific documentation and software tools. At present almost 2000 national and international users and user groups have the opportunity to request Earth science data from a portfolio of 275 different products types and more than 20 Million single data files with an added volume of approximately 12 TByte. The majority of the data and information, the portal currently offers to the public, are global geomonitoring products such as satellite orbit and Earth gravity field data as well as geomagnetic and atmospheric data for the exploration. These products for Earths changing system are provided via state-of-the art retrieval techniques. The data product catalog system behind these techniques is based on the extensive usage of standardized metadata, which are describing the different geoscientific product types and data products in an uniform way. Where as all ISDC product types are specified by NASA's Directory Interchange Format (DIF), Version 9.0 Parent XML DIF metadata files, the individual data files are described by extended DIF metadata documents. Depending on the beginning of the scientific project, one part of data files are described by extended DIF, Version 6 metadata documents and the other part are specified by data Child XML DIF metadata documents. Both, the product type dependent parent DIF metadata documents and the data file dependent child DIF metadata documents are derived from a base-DIF.xsd xml schema file. The ISDC metadata philosophy defines a geoscientific product as a package consisting of mostly one or sometimes more than one data file plus one extended DIF metadata file. Because NASA's DIF metadata standard has been developed in order to specify a collection of data only, the extension of the DIF standard consists of new and specific attributes, which are necessary for

  15. Web Standard: PDF - When to Use, Document Metadata, PDF Sections

    EPA Pesticide Factsheets

    PDF files provide some benefits when used appropriately. PDF files should not be used for short documents ( 5 pages) unless retaining the format for printing is important. PDFs should have internal file metadata and meet section 508 standards.

  16. Antihyperlipidemic effects of Citrus sinensis, Citrus paradisi, and their combinations

    PubMed Central

    Mallick, Neelam; Khan, Rafeeq Alam

    2016-01-01

    Objective: Hyperlipidemia, extensively contributes in the progression of coronary heart diseases and atherosclerosis, but may be managed through alterations in the nutritional pattern. Several studies show that diet rich in polyphenols and antioxidants have antiatherogenic effects. Citrus sinensis and Citrus paradisi are widely known for health benefits and have found to produce antioxidant, anti-inflammatory, and hypolipidemic effects, hence current research was planned to determine the hypolipidemic effects of C. sinensis and C. paradisi in rats receiving diet rich in cholesterol. Materials and Methods: All rats were divided into 11 groups each comprising 10 animals: Normal control group and hyperlipidemic control. C. sinensis treated three groups, C. paradisi treated three groups, C. sinensis and C. paradisi combination treated two groups, and group treated atorvastatin. All rats in the respective groups were treated orally with sterile water, juices, and standard drug for 8 weeks and lipid profile was estimated at the end of dosing. Results: Cholesterol, triglycerides (TGs), and low-density lipoprotein (LDL) were decreased at all the three doses of C. sinensis and C. paradisi but rise in high-density lipoprotein (HDL) was only significant at 8 ml/kg, and 0.3 ml/kg, respectively. Animals received the combination doses of C. sinensis and C. paradisi also showed a highly significant fall in cholesterol, LDL, and TGs, however HDL level was significantly elevated by SPJ-2 combination. Conclusion: Results suggest that C. sinensis and C. paradisi possess antihyperlipidemic activity due to phytochemicals and other essential nutrients, hence may serve as cardioprotective by preventing thrombosis. PMID:27134462

  17. Assessing the Effects of Climate Variability on Orange Yield in Florida to Reduce Production Forecast Errors

    NASA Astrophysics Data System (ADS)

    Concha Larrauri, P.

    2015-12-01

    Orange production in Florida has experienced a decline over the past decade. Hurricanes in 2004 and 2005 greatly affected production, almost to the same degree as strong freezes that occurred in the 1980's. The spread of the citrus greening disease after the hurricanes has also contributed to a reduction in orange production in Florida. The occurrence of hurricanes and diseases cannot easily be predicted but the additional effects of climate on orange yield can be studied and incorporated into existing production forecasts that are based on physical surveys, such as the October Citrus forecast issued every year by the USDA. Specific climate variables ocurring before and after the October forecast is issued can have impacts on flowering, orange drop rates, growth, and maturation, and can contribute to the forecast error. Here we present a methodology to incorporate local climate variables to predict the USDA's orange production forecast error, and we study the local effects of climate on yield in different counties in Florida. This information can aid farmers to gain an insight on what is to be expected during the orange production cycle, and can help supply chain managers to better plan their strategy.

  18. The importance of metrological metadata in the environmental monitoring

    NASA Astrophysics Data System (ADS)

    Santana, Márcio A. A.; Guimarães, Patrícia L. O.; Almêida, Eugênio S.; Eklin, Tero

    2016-07-01

    The metrological metadata propagation contributes significantly to improve the data analysis of the meteorological observation systems. An overview of the scenarios data and metadata treatment in environmental monitoring is presented in this article. We also discussed the ways of use of the calibration results on the meteorological measurement systems as well as the convergence of the methods used in the corrections treatment and estimation of the measuring uncertainty in metrological and meteorological areas.

  19. Metadata Requirements in a Multi-Layered Networked Environment

    DTIC Science & Technology

    2005-05-16

    ment of the asset’s applicability of use. The DDMS has become very well aligned with the Dublin Core Metadata Initiative ( DCMI ) [12] specification...with extensions beyond the DCMI to address the particular business needs of the US DOD. As an example of the ex- tensions, the DCMI element...controlled via appropriate security meta- data. The DCMI and DDMS both represent controlled structures to be used for transfer of metadata. However, it is

  20. Massive Meta-Data: A New Data Mining Resource

    NASA Astrophysics Data System (ADS)

    Hugo, W.

    2012-04-01

    Worldwide standardisation, and interoperability initiatives such as GBIF, Open Access and GEOSS (to name but three of many) have led to the emergence of interlinked and overlapping meta-data repositories containing, potentially, tens of millions of entries collectively. This forms the backbone of an emerging global scientific data infrastructure that is both driven by changes in the way we work, and opens up new possibilities in management, research, and collaboration. Several initiatives are concentrated on building a generalised, shared, easily available, scalable, and indefinitely preserved scientific data infrastructure to aid future scientific work. This paper deals with the parallel aspect of the meta-data that will be used to support the global scientific data infrastructure. There are obvious practical issues (semantic interoperability and speed of discovery being the most important), but we are here more concerned with some of the less obvious conceptual questions and opportunities: 1. Can we use meta-data to assess, pinpoint, and reduce duplication of meta-data? 2. Can we use it to reduce overlaps of mandates in data portals, research collaborations, and research networks? 3. What possibilities exist for mining the relationships that exist implicitly in very large meta-data collections? 4. Is it possible to define an explicit 'scientific data infrastructure' as a complex, multi-relational network database, that can become self-maintaining and self-organising in true Web 2.0 and 'social networking' fashion? The paper provides a blueprint for a new approach to massive meta-data collections, and how this can be processed using established analysis techniques to answer the questions posed. It assesses the practical implications of working with standard meta-data definitions (such as ISO 19115, Dublin Core, and EML) in a meta-data mining context, and makes recommendations in respect of extension to support self-organising, semantically oriented 'networks of

  1. The Benchmark Farm Program : a method for estimating irrigation water use in southwest Florida

    USGS Publications Warehouse

    Duerr, A.D.; Trommer, J.T.

    1982-01-01

    Irrigation water-use data are summarized in this report for 74 farms in the Southwest Florida Water Management District. Most data are for 1978-90, but 18 farms have data extending back to the early 1970's. Data include site number and location, season and year, crop type, irrigation system, monitoring method, and inches of water applied per acre. Crop types include citrus, cucumbers, pasture, peanuts, sod, strawberries, and tropical fish farms are also included. Water-application rates per growing season ranged from 0 inches per acre for several citrus and pasture sites to 239.7 inches per acre for a nursery site. The report also includes rainfall data for 12 stations throughout the study area. (USGS)

  2. Surviving the Transition from FGDC to ISO Metadata Standards

    NASA Astrophysics Data System (ADS)

    Fox, C. G.; Milan, A.; Sylvester, D.; Habermann, T.; Kozimor, J.; Froehlich, D.

    2008-12-01

    The NOAA Metadata Manager and Repository (NMMR) has served a well established group of data managers at NOAA's National Data Centers for over a decade. It provides a web interface for managing FGDC compliant metadata and publishing that metadata to several large data discovery systems (GeoSpatial One-Stop, NASA's Global Change Master Directory, the Comprehensive Large-Array data Stewardship System, and FirstGov). The Data Center's are now faced with migration of these metadata to new International Metadata Standards (ISO 19115, 19115-2, "). We would like to accomplish this migration while minimizing disruption to the current users and supporting significant new capabilities of the ISO standards. Our current approach involves relational ISO views on top of the existing XML database to convert FGDC content into ISO without changing the data manager interface. These views are the foundation for ISO- compliant XML metadata access via REST-like web services. Additionally, new database tables provide information required by ISO that is not included in the FGDC standard. This approach allows us to support the new standard without disrupting the current system.

  3. Florida's Online Option

    ERIC Educational Resources Information Center

    Tucker, Bill

    2009-01-01

    Education reform often appears a zero-sum battle, one that pits crusaders demanding accountability and choice against much of the traditional education establishment, including teachers unions. The political skirmishes in Florida, including court fights over vouchers and charter schools, and ongoing struggles over a parade of different merit pay…

  4. Migrant Programs in Florida.

    ERIC Educational Resources Information Center

    National Migrant Information Clearinghouse, Austin, TX. Juarez-Lincoln Center.

    As the last of 3 directories, this lists services available to migrants in Florida. Migrant programs, Community Action Agencies, and labor camps in the state are identified by county. Information for each county includes total population, estimated migrant population, migrant labor demand, estimated migrant wages, crops, work periods, migrant…

  5. The Maya of Florida.

    ERIC Educational Resources Information Center

    Burns, Allan F.

    1989-01-01

    Discusses the Maya people who fled Guatemala due to a civil war and illegally entered the U.S. and settled in Florida. Presents a picture of their living conditions, employment opportunities, cultural traditions, community development, and family organization. Discusses a Kanjobal Association and the CORN-MAYA program, and explains immigration…

  6. Conservation: saving Florida's manatees

    USGS Publications Warehouse

    Bonde, Robert K.

    2008-01-01

    Robert K. Bonde of the U.S. Geological Survey writes about the protected population of manatees in Crystal River, Florida, including information about the threats they face as they migrate in and out of protected waters. Photographer Carol Grant shares images of "Angel," a newborn manatee she photographed early one winter morning.

  7. Florida Educational Facilities, 2000.

    ERIC Educational Resources Information Center

    Florida State Dept. of Education, Tallahassee. Office of Educational Facilities.

    This publication describes Florida school and community college facilities completed in 2000, including photographs and floor plans. The facilities profiled are:J. R. Arnold High School (Bay County); Falcon Cove Middle School (Broward); Floranada Elementary School (Broward); Lyons Creek Middle School (Broward); Parkside Elementary School…

  8. Florida Driver Education Handbook.

    ERIC Educational Resources Information Center

    Mick, Susan H.

    This student edition contains the same basic information as the official Florida Driver Handbook, but the reading difficulty of the material has been sharply reduced. It also provides activity-oriented exercises and review tests on this material. Introductory materials include a complete listing of all activities given, some vocabulary exercises…

  9. The Seminoles of Florida.

    ERIC Educational Resources Information Center

    Covington, James W.

    This book gives a complete account of the Florida Seminoles from their entrance into the state almost 300 years ago, through the great chiefdoms of Micanopy, Osceola, and Billy Bowlegs, to the current political reality of democratic tribal elections. After moving into the peninsula from Georgia and Alabama, the Seminoles fought three wars against…

  10. Florida and SREB

    ERIC Educational Resources Information Center

    Southern Regional Education Board (SREB), 2009

    2009-01-01

    The Southern Regional Education Board is a nonprofit organization that works collaboratively with Florida and 15 other member states to improve education at every level-- from pre-K to postdoctoral study-- through many effective programs and initiatives. SREB's "Challenge to Lead Goals for Education", which call for the region to lead…

  11. Evolving Metadata in NASA Earth Science Data Systems

    NASA Astrophysics Data System (ADS)

    Mitchell, A.; Cechini, M. F.; Walter, J.

    2011-12-01

    NASA's Earth Observing System (EOS) is a coordinated series of satellites for long term global observations. NASA's Earth Observing System Data and Information System (EOSDIS) is a petabyte-scale archive of environmental data that supports global climate change research by providing end-to-end services from EOS instrument data collection to science data processing to full access to EOS and other earth science data. On a daily basis, the EOSDIS ingests, processes, archives and distributes over 3 terabytes of data from NASA's Earth Science missions representing over 3500 data products ranging from various types of science disciplines. EOSDIS is currently comprised of 12 discipline specific data centers that are collocated with centers of science discipline expertise. Metadata is used in all aspects of NASA's Earth Science data lifecycle from the initial measurement gathering to the accessing of data products. Missions use metadata in their science data products when describing information such as the instrument/sensor, operational plan, and geographically region. Acting as the curator of the data products, data centers employ metadata for preservation, access and manipulation of data. EOSDIS provides a centralized metadata repository called the Earth Observing System (EOS) ClearingHouse (ECHO) for data discovery and access via a service-oriented-architecture (SOA) between data centers and science data users. ECHO receives inventory metadata from data centers who generate metadata files that complies with the ECHO Metadata Model. NASA's Earth Science Data and Information System (ESDIS) Project established a Tiger Team to study and make recommendations regarding the adoption of the international metadata standard ISO 19115 in EOSDIS. The result was a technical report recommending an evolution of NASA data systems towards a consistent application of ISO 19115 and related standards including the creation of a NASA-specific convention for core ISO 19115 elements. Part of

  12. Postphloem, Nonvascular Transfer in Citrus

    PubMed Central

    Koch, Karen E.; Avigne, Wayne T.

    1990-01-01

    Postphloem, nonvascular assimilate transport occurs over an unusually long area in citrus fruit and thus facilitates investigation of this process relative to sugar entry into many sink structures. Labeled photosynthates moving into juice tissues of grapefruit (Citrus paradisi Macf.) slowed dramatically after entering the postphloem transport path (parenchyma cells, narrow portions of segment epidermis, and hair-like, parenchymatous stalks of juice sacs). Kinetic, metabolic, and compositional data indicated that transfer through the nonvascular area was delayed many hours by temporary storage and/or equilibration with sugars in compartments along the postphloem path. Labeled assimilates were generally recovered as sucrose throughout the path, and extent of hexose formation enroute bore no apparent relationship to the assimilate transfer process. Even after 24 hours, radiolabel was restricted to discrete, highly localized areas directly between vascular bundles and juice sacs. Postphloem transfer occurred against an ascending sucrose concentration gradient in young fruit, whereas a descending gradient (favoring diffusion/cytoplasmic streaming) developed only later in maturation. Involvement of a postphloem bulk flow is complicated in the present instance by the extremely limited water loss from juice sacs either via transpiration or fluid backflow. Nonetheless, tissue expansion can account for a collective water inflow of at least 1.0 milliliter per day throughout the majority of juice sac development, thus providing a modest, but potentially important means of nonvascular solution flow. Overall, data indicate postphloem transfer (a) can follow highly localized paths through sizable nonvascular areas (up to 3.0 centimeters total), (b) appears to involve temporary storage and/or equilibration with compartmentalized sugars enroute, (c) can occur either against an overall up-hill sugar gradient (young tissues) or along a descending gradient (near full expansion), and

  13. Automated metadata--final project report

    SciTech Connect

    Schissel, David

    2016-04-01

    This report summarizes the work of the Automated Metadata, Provenance Cataloging, and Navigable Interfaces: Ensuring the Usefulness of Extreme-Scale Data Project (MPO Project) funded by the United States Department of Energy (DOE), Offices of Advanced Scientific Computing Research and Fusion Energy Sciences. Initially funded for three years starting in 2012, it was extended for 6 months with additional funding. The project was a collaboration between scientists at General Atomics, Lawrence Berkley National Laboratory (LBNL), and Massachusetts Institute of Technology (MIT). The group leveraged existing computer science technology where possible, and extended or created new capabilities where required. The MPO project was able to successfully create a suite of software tools that can be used by a scientific community to automatically document their scientific workflows. These tools were integrated into workflows for fusion energy and climate research illustrating the general applicability of the project’s toolkit. Feedback was very positive on the project’s toolkit and the value of such automatic workflow documentation to the scientific endeavor.

  14. Better Living Through Metadata: Examining Archive Usage

    NASA Astrophysics Data System (ADS)

    Becker, G.; Winkelman, S.; Rots, A.

    2013-10-01

    The primary purpose of an observatory's archive is to provide access to the data through various interfaces. User interactions with the archive are recorded in server logs, which can be used to answer basic questions like: Who has downloaded dataset X? When did she do this? Which tools did she use? The answers to questions like these fill in patterns of data access (e.g., how many times dataset X has been downloaded in the past three years). Analysis of server logs provides metrics of archive usage and provides feedback on interface use which can be used to guide future interface development. The Chandra X-ray Observatory is fortunate in that a database to track data access and downloads has been continuously recording such transactions for years; however, it is overdue for an update. We will detail changes we hope to effect and the differences the changes may make to our usage metadata picture. We plan to gather more information about the geographic location of users without compromising privacy; create improved archive statistics; and track and assess the impact of web “crawlers” and other scripted access methods on the archive. With the improvements to our download tracking we hope to gain a better understanding of the dissemination of Chandra's data; how effectively it is being done; and perhaps discover ideas for new services.

  15. Site Plan & Site Section of Citrus Landscape (Showing Relationship ...

    Library of Congress Historic Buildings Survey, Historic Engineering Record, Historic Landscapes Survey

    Site Plan & Site Section of Citrus Landscape (Showing Relationship of Groves & Irrigation System to Grove Canal) - Arlington Heights Citrus Landscape, Southwestern portion of city of Riverside, Riverside, Riverside County, CA

  16. Parthenogenesis in the Two Races of Radopholus similis from Florida.

    PubMed

    Huettel, R N; Dickson, D W

    1981-01-01

    Single larval inoculations of both the citrus and banana races of Radopholus similis from Florida indicate parthenogenetic reproduction is possible. These races normally reproduce amphimictieally. Both races produced all-female populations from single larva inoculations after 80 d and male-female populations after 180 d. The all-female populations produced female progeny with viable eggs, but no spermatozoa were present in the spermatheca, indicating tychoparthenogenesis occurred. Uninseminated females in the latter study produced both male and female progeny. Approximately 95% of the female progeny of the male-female populations were inseminated, indicating that cross-fertilization had occurred. The proportion of males to females was as expected in a normal bisexual population. No intersex males were observed. The mechanism of sex determination is not fully understood but assumed to be enviromnentally induced.

  17. Extreme soil erosion rates in citrus slope plantations and control strategies. A literature review

    NASA Astrophysics Data System (ADS)

    Cerdà, Artemi; Ángel González Peñaloza, Félix; Pereira, Paulo; Reyes Ruiz Gallardo, José; García Orenes, Fuensanta; Burguet, María

    2013-04-01

    Soil Erosion is a natural process that shapes the Earth. Due to the impact of agriculture, soil erosion rates increase, landforms show gullies and rills, and soils are depleted. In the Mediterranean, wheat, olive and vineyards were the main agriculture products, but new plantations are being found in sloping terrain due to the drip-irrigation. This new strategy results in the removal of the traditional terraces in order to make suitable for mechanization the agriculture plantation. Citrus is a clear example of the impact of the new chemical agriculture with a high investment in herbicides, pesticides, mechanisation, land levelling and drip computer controlled irrigation systems. The new plantation of citrus orchards is found in the Mediterranean, but also in California, Florida, China and Brazil. Chile, Argentina, and South Africa are other producers that are moving to an industrial production of citrus. This paper shows how the citrus plantations are found as one of the most aggressive plantation due to the increase in soil erosion, and how we can apply successful control strategies. The research into the high erosion rates of citrus orchard built on the slopes are mainly found in China (Wu et al., 1997; Xu et al., 2010; Wang et al., 2011; Wu et al., 2011; Liu et al., 2011; Lü et al., 2011; Xu et al., 2012) and in the Mediterranean (Cerdà and Jurgensen, 2008; 2009; Cerdà et al., 2009a; 2009b; Cerdà et al., 2011; 2012) Most of the research done devoted to the measurements of the soil losses but also some research is done related to the soil properties (Lu et al., 1997; Lü et al., 2012; Xu et al., 2012) and the impact of cover crops to reduce the soil losses (Lavigne et al., 2012; Le Bellec et al., 2012) and the use of residues such as dried citrus peel in order to reduce the soil losses. There are 116 million tonnes of citrus produced yearly, and this affects a large surface of the best land. The citrus orchards are moving from flood irrigated to drip

  18. Teacher Education Program Reviews at University of North Florida, Florida State University, Florida Atlantic University, University of South Florida, March 1994-April 1995.

    ERIC Educational Resources Information Center

    England, David A.

    This report offers the review of four joint teacher education reviews conducted in the Florida State University System (SUS). Institutions reviewed are: University of North Florida (UNF), Florida State University (FSU), Florida Atlantic University (FAU), and the University of South Florida (USF). Joint teams were composed of the National Council…

  19. Detection of citrus huanglongbing-associated 'Candidatus Liberibacter asiaticus' in citrus and Diaphorina citri in Pakistan, seasonal variability, and implications for disease management.

    PubMed

    Razi, Muhammad F; Keremane, Manjunath L; Ramadugu, Chandrika; Roose, Mikeal; Khan, Iqrar A; Lee, Richard F

    2014-03-01

    We report the detection of the huanglongbing (HLB)-associated bacterium 'Candidatus Liberibacter asiaticus' from both plants and insects in Pakistan and the seasonal variability in the numbers of 'Ca. L. asiaticus'-positive psyllid vector, Diaphorina citri. Our studies showed that 'Ca. L. asiaticus' was detectable from trees in areas with maximum temperatures reaching nearly 50°C (average maximum of 42°C). However, the bacterium was present at very low levels in psyllids both in summer (June to August) and autumn (September to November) in contrast to reports from Florida, where the bacterium was detectable at very high levels during October to November. We hypothesize that hot summer temperatures in Pakistan may interfere with acquisition and replication of 'Ca. L. asiaticus' in psyllids and may lead to dead or non transmissible 'Ca. L. asiaticus' in plants. Psyllid counts were very low in both summer and winter, showed a population peak ('Ca. L. asiaticus'-positive vectors) in spring, and showed a larger peak ('Ca. L. asiaticus'-free psyllids) in autumn. Natural thermotherapy during hot summers and a low vector population during environmental extremes may have played a major role in long-term survival of the citrus industry in Pakistan. These results may be useful in developing management strategies for U.S. citrus industries in Texas and California.

  20. Hydrogen Research at Florida Universities

    NASA Technical Reports Server (NTRS)

    Block, David L.; T-Raissi, Ali

    2009-01-01

    This final report describes the R&D activities and projects conducted for NASA under the 6-year NASA Hydrogen Research at Florida Universities grant program. Contained within this report are summaries of the overall activities, one-page description of all the reports funded under this program and all of the individual reports from each of the 29 projects supported by the effort. The R&D activities cover hydrogen technologies related to production, cryogenics, sensors, storage, separation processes, fuel cells, resource assessments and education. In the span of 6 years, the NASA Hydrogen Research at Florida Universities program funded a total of 44 individual university projects, and employed more than 100 faculty and over 100 graduate research students in the six participating universities. Researchers involved in this program have filed more than 20 patents in all hydrogen technology areas and put out over 220 technical publications in the last 2 years alone. This 6 year hydrogen research program was conducted by a consortium of six Florida universities: Florida International University (FIU) in Miami, Florida State University (FSU) and Florida A&M University (FAMU) in Tallahassee, University of Central Florida (UCF) in Orlando, University of South Florida (USF) in Tampa, and University of Florida (UF) in Gainesville. The Florida Solar Energy Center (FSEC) of the University of Central Florida managed the research activities of all consortium member universities except those at the University of Florida. This report does not include any of the programs or activities conducted at the University of Florida, but can be found in NASA/CR-2008-215440-PART 1-3.

  1. Florida Hydrogen Initiative

    SciTech Connect

    Block, David L

    2013-06-30

    The Florida Hydrogen Initiative (FHI) was a research, development and demonstration hydrogen and fuel cell program. The FHI program objectives were to develop Florida?s hydrogen and fuel cell infrastructure and to assist DOE in its hydrogen and fuel cell activities The FHI program funded 12 RD&D projects as follows: Hydrogen Refueling Infrastructure and Rental Car Strategies -- L. Lines, Rollins College This project analyzes strategies for Florida's early stage adaptation of hydrogen-powered public transportation. In particular, the report investigates urban and statewide network of refueling stations and the feasibility of establishing a hydrogen rental-car fleet based in Orlando. Methanol Fuel Cell Vehicle Charging Station at Florida Atlantic University ? M. Fuchs, EnerFuel, Inc. The project objectives were to design, and demonstrate a 10 kWnet proton exchange membrane fuel cell stationary power plant operating on methanol, to achieve an electrical energy efficiency of 32% and to demonstrate transient response time of less than 3 milliseconds. Assessment of Public Understanding of the Hydrogen Economy Through Science Center Exhibits, J. Newman, Orlando Science Center The project objective was to design and build an interactive Science Center exhibit called: ?H2Now: the Great Hydrogen Xchange?. On-site Reformation of Diesel Fuel for Hydrogen Fueling Station Applications ? A. Raissi, Florida Solar Energy Center This project developed an on-demand forecourt hydrogen production technology by catalytically converting high-sulfur hydrocarbon fuels to an essentially sulfur-free gas. The removal of sulfur from reformate is critical since most catalysts used for the steam reformation have limited sulfur tolerance. Chemochromic Hydrogen Leak Detectors for Safety Monitoring ? N. Mohajeri and N. Muradov, Florida Solar Energy Center This project developed and demonstrated a cost-effective and highly selective chemochromic (visual) hydrogen leak detector for safety monitoring

  2. Genome wide selection in Citrus breeding.

    PubMed

    Gois, I B; Borém, A; Cristofani-Yaly, M; de Resende, M D V; Azevedo, C F; Bastianel, M; Novelli, V M; Machado, M A

    2016-10-17

    Genome wide selection (GWS) is essential for the genetic improvement of perennial species such as Citrus because of its ability to increase gain per unit time and to enable the efficient selection of characteristics with low heritability. This study assessed GWS efficiency in a population of Citrus and compared it with selection based on phenotypic data. A total of 180 individual trees from a cross between Pera sweet orange (Citrus sinensis Osbeck) and Murcott tangor (Citrus sinensis Osbeck x Citrus reticulata Blanco) were evaluated for 10 characteristics related to fruit quality. The hybrids were genotyped using 5287 DArT_seq(TM) (diversity arrays technology) molecular markers and their effects on phenotypes were predicted using the random regression - best linear unbiased predictor (rr-BLUP) method. The predictive ability, prediction bias, and accuracy of GWS were estimated to verify its effectiveness for phenotype prediction. The proportion of genetic variance explained by the markers was also computed. The heritability of the traits, as determined by markers, was 16-28%. The predictive ability of these markers ranged from 0.53 to 0.64, and the regression coefficients between predicted and observed phenotypes were close to unity. Over 35% of the genetic variance was accounted for by the markers. Accuracy estimates with GWS were lower than those obtained by phenotypic analysis; however, GWS was superior in terms of genetic gain per unit time. Thus, GWS may be useful for Citrus breeding as it can predict phenotypes early and accurately, and reduce the length of the selection cycle. This study demonstrates the feasibility of genomic selection in Citrus.

  3. First report of citrus leprosis virus nuclear type in Colombia

    Technology Transfer Automated Retrieval System (TEKTRAN)

    Citrus leprosis is a difficult viral disease causing significant damage to citrus fruit in South America and Central America. The disease is marked by dramatic lesions on fruit, leaves and stems resulting in unmarketable product. Citrus leprosis virus cytoplasmic types (CiLV-C and CiLV-C2) wer edete...

  4. Cryopreservation of Citrus shoot tips using micrografting for recovery

    Technology Transfer Automated Retrieval System (TEKTRAN)

    The USDA-ARS National Plant Germplasm System (NPGS) and the University of California Citrus Variety Collection maintain more than 888 unique accessions representing 132 taxa of Citrus, Fortunella, and Citrus wild species relatives within field, screenhouse, and greenhouse collections. We have ident...

  5. Biological Indexing of Graft Transmissible Diseases of Citrus

    Technology Transfer Automated Retrieval System (TEKTRAN)

    Biological indexing for the detection of graft transmissible diseases of citrus is essential for maintaining a citrus certification program. Many of the graft transmissible diseases of citrus are harbored as latent infections in the scions, but when propagated on a susceptible rootstock that allow...

  6. 21 CFR 74.302 - Citrus Red No. 2.

    Code of Federal Regulations, 2010 CFR

    2010-04-01

    ... 21 Food and Drugs 1 2010-04-01 2010-04-01 false Citrus Red No. 2. 74.302 Section 74.302 Food and... ADDITIVES SUBJECT TO CERTIFICATION Foods § 74.302 Citrus Red No. 2. (a) Identity. (1) The color additive Citrus Red No. 2 is principally 1-(2,5-dimethoxyphenylazo)-2-naphthol. (2) The following diluents may...

  7. 7 CFR 319.56-41 - Citrus from Peru.

    Code of Federal Regulations, 2011 CFR

    2011-01-01

    ... 7 Agriculture 5 2011-01-01 2011-01-01 false Citrus from Peru. 319.56-41 Section 319.56-41... SERVICE, DEPARTMENT OF AGRICULTURE FOREIGN QUARANTINE NOTICES Fruits and Vegetables § 319.56-41 Citrus from Peru. Grapefruit (Citrus paradisi), limes (C. aurantiifolia), mandarins or tangerines...

  8. 7 CFR 319.56-41 - Citrus from Peru.

    Code of Federal Regulations, 2014 CFR

    2014-01-01

    ... 7 Agriculture 5 2014-01-01 2014-01-01 false Citrus from Peru. 319.56-41 Section 319.56-41... SERVICE, DEPARTMENT OF AGRICULTURE FOREIGN QUARANTINE NOTICES Fruits and Vegetables § 319.56-41 Citrus from Peru. Grapefruit (Citrus paradisi), limes (C. aurantiifolia), mandarins or tangerines...

  9. 7 CFR 319.56-41 - Citrus from Peru.

    Code of Federal Regulations, 2012 CFR

    2012-01-01

    ... 7 Agriculture 5 2012-01-01 2012-01-01 false Citrus from Peru. 319.56-41 Section 319.56-41... SERVICE, DEPARTMENT OF AGRICULTURE FOREIGN QUARANTINE NOTICES Fruits and Vegetables § 319.56-41 Citrus from Peru. Grapefruit (Citrus paradisi), limes (C. aurantiifolia), mandarins or tangerines...

  10. 7 CFR 319.56-41 - Citrus from Peru.

    Code of Federal Regulations, 2013 CFR

    2013-01-01

    ... 7 Agriculture 5 2013-01-01 2013-01-01 false Citrus from Peru. 319.56-41 Section 319.56-41... SERVICE, DEPARTMENT OF AGRICULTURE FOREIGN QUARANTINE NOTICES Fruits and Vegetables § 319.56-41 Citrus from Peru. Grapefruit (Citrus paradisi), limes (C. aurantiifolia), mandarins or tangerines...

  11. 21 CFR 74.302 - Citrus Red No. 2.

    Code of Federal Regulations, 2011 CFR

    2011-04-01

    ... 21 Food and Drugs 1 2011-04-01 2011-04-01 false Citrus Red No. 2. 74.302 Section 74.302 Food and... ADDITIVES SUBJECT TO CERTIFICATION Foods § 74.302 Citrus Red No. 2. (a) Identity. (1) The color additive Citrus Red No. 2 is principally 1-(2,5-dimethoxyphenylazo)-2-naphthol. (2) The following diluents may...

  12. Pest management practices aimed at curtailing citrus huanglongbing disease

    Technology Transfer Automated Retrieval System (TEKTRAN)

    Huanglongbing (HLB) is a devastating, insect-vectored disease of citrus sometimes referred to as citrus greening disease and putatively caused by phloem-limited bacteria within the genus Candidatus Liberibacter. Citrus trees infected by this disease decline in productivity; produce misshapen, inedib...

  13. Trailers transporting oranges to processing plants move Asian citrus psyllids

    Technology Transfer Automated Retrieval System (TEKTRAN)

    Huanglongbing (citrus greening) is one of the most serious of citrus diseases. Movement of the disease occurs as a result of natural vector-borne infection and by movement of plant material. We demonstrate here that Diaphorina citri Kuwayama (vector of citrus greening pathogens) can be transported i...

  14. Long term field evaluation reveals HLB resistance in Citrus relatives

    Technology Transfer Automated Retrieval System (TEKTRAN)

    Citrus huanglongbing (HLB) is a destructive disease with no known cure. To identify sources of HLB resistance in the subfamily Aurantioideae to which citrus belongs, we conducted a six-year field trial under natural disease challenge conditions in an HLB endemic region. The study included 65 Citrus ...

  15. Current status of Citrus tristeza virus in Central California

    Technology Transfer Automated Retrieval System (TEKTRAN)

    The Lindcove Research and Extension Center (LREC), Exeter, CA has 51 ha of citrus and is the field site and screenhouses for the University of California Citrus Clonal Protection Program (CCPP). LREC maintains a zero tolerance of Citrus tristeza virus (CTV) infected trees to protect the CCPP and re...

  16. 21 CFR 74.302 - Citrus Red No. 2.

    Code of Federal Regulations, 2012 CFR

    2012-04-01

    ... 21 Food and Drugs 1 2012-04-01 2012-04-01 false Citrus Red No. 2. 74.302 Section 74.302 Food and... ADDITIVES SUBJECT TO CERTIFICATION Foods § 74.302 Citrus Red No. 2. (a) Identity. (1) The color additive Citrus Red No. 2 is principally 1-(2,5-dimethoxyphenylazo)-2-naphthol. (2) The following diluents may...

  17. 21 CFR 74.302 - Citrus Red No. 2.

    Code of Federal Regulations, 2014 CFR

    2014-04-01

    ... 21 Food and Drugs 1 2014-04-01 2014-04-01 false Citrus Red No. 2. 74.302 Section 74.302 Food and... ADDITIVES SUBJECT TO CERTIFICATION Foods § 74.302 Citrus Red No. 2. (a) Identity. (1) The color additive Citrus Red No. 2 is principally 1-(2,5-dimethoxyphenylazo)-2-naphthol. (2) The following diluents may...

  18. 21 CFR 74.302 - Citrus Red No. 2.

    Code of Federal Regulations, 2013 CFR

    2013-04-01

    ... 21 Food and Drugs 1 2013-04-01 2013-04-01 false Citrus Red No. 2. 74.302 Section 74.302 Food and... ADDITIVES SUBJECT TO CERTIFICATION Foods § 74.302 Citrus Red No. 2. (a) Identity. (1) The color additive Citrus Red No. 2 is principally 1-(2,5-dimethoxyphenylazo)-2-naphthol. (2) The following diluents may...

  19. Current California Drought: Impact on Citrus Trees and Potential Mitigation

    Technology Transfer Automated Retrieval System (TEKTRAN)

    California is in another cycle of extended drought. The article reviews and discusses likely impact of the current drought on citrus growers and potential mitigation techniques. Citrus physiological responses to water stress is briefly reviewed. The direct impact of drought on citrus is reduced frui...

  20. Huanglongbing increases Diplodia Stem End Rot in Citrus sinensis

    Technology Transfer Automated Retrieval System (TEKTRAN)

    Huanglongbing (HLB), one of the most devastating diseases of citrus is caused by the a-Proteobacteria Candidatus Liberibacter. Diplodia natalensis Pole-Evans is a fungal pathogen which has been known to cause a postharvest stem-end rot of citrus, the pathogen infects citrus fruit under the calyx, an...

  1. Molecular analysis of citrus rust (Phyllocoptruta oleivora) populations in Texas

    Technology Transfer Automated Retrieval System (TEKTRAN)

    Phyllocoptruta olevoria (Acari: Eriophyidae) or the citrus rust mite (CRM) is one of the most economically important mite pests of citrus worldwide. CRM originated from Asia, however it is found in most citrus producing areas, such as, Brazil, Morocco and the United States. Though CRM is a major pes...

  2. Intercropping of citrus and guava trees for management of Huanglongbing

    Technology Transfer Automated Retrieval System (TEKTRAN)

    Recent studies conducted in Viet Nam by Vietnamese, Japanese and Australian scientists indicate that interplanting citrus with guava negated infestations of Asian citrus psyllid and consequently huanglongbing, a serious disease caused by a bacterium vectored by the psyllid. Young citrus interplanted...

  3. Separation of metadata and bulkdata to speed DICOM tag morphing

    NASA Astrophysics Data System (ADS)

    Ismail, Mahmoud; Ning, Yu; Philbin, James

    2014-03-01

    Most medical images are archived and transmitted using the DICOM format. The DICOM information model combines image pixel data and associated metadata into a single object. It is not possible to access the metadata separately from the pixel data. However, there are important use cases that only need access to metadata, and the DICOM format increases the running time of those use cases. Tag morphing is an example of one such use case. Tag or attribute morphing includes insertion, deletion, or modification of one or more of the metadata attributes in a study. It is typically used for order reconciliation on study acquisition or to localize the Issuer of Patient ID and the Patient ID attributes when data from one Medical Record Number (MRN) domain is transferred to or displayed in a different domain. This work uses the Multi-Series DICOM (MSD) format to reduce the time required for tag morphing. The MSD format separates metadata from pixel data, and at the same time eliminates duplicate attributes. MSD stores studies using two files rather than in many single frame files typical of DICOM. The first file contains the de-duplicated study metadata, and the second contains pixel data and other bulkdata. A set of experiments were performed where metadata updates were applied to a set of DICOM studies stored in both the traditional Single Frame DICOM (SFD) format and the MSD format. The time required to perform the updates was recorded for each format. The results show that tag morphing is, on average, more than eight times faster in MSD format.

  4. Potentiometric surface of the Floridan Aquifer, Southwest Florida Water Management District and adjacent areas, September 1978

    USGS Publications Warehouse

    Wolansky, R.M.; Mills, L.R.; Woodham, W.M.; Laughlin, C.P.

    1978-01-01

    A September 1978 potentiometric-surface map depicts the annual high water-level period of the Floridan aquifer in the Southwest Florida Management District. Potentiometric levels increased 10 to 25 feet between May 1978 and September 1978, in the citrus and farming sections of southern Hillsborough, northern Hardee, southwestern Polk and Manatee Counties. These areas are widely affected by pumping for irrigation and have the greatest fluctuations in water-levels between the low and high water-level periods. Water-level rises in coastal, northern and southern areas of the Water Management District ranged from 0 to 10 feet. (Woodard-USGS)

  5. Potentiometric surface of the Floridan Aquifer, Southwest Florida Water Management District, September 1979

    USGS Publications Warehouse

    Yobbi, D.K.; Woodham, W.M.; Laughlin, Charles P.

    1979-01-01

    A September 1979 potentiometric-surface map of the Southwest Florida Water Management District depicts the annual high water-level period. Potentiometric levels increased 1 to 20 feet between May 1979 and September 1979, in the citrus and farming sections of southern Hillsborough, northern Hardee, southwestern Polk, northwestern DeSoto, and Manatee Counties. Water levels in these areas are widely affected by pumping for irrigation and have the greatest range in fluctuations. Water-level increases ranged from 0 to 7 feet in coastal, northern, and southern areas of the Water Management District. Generally, potentiometric levels were higher than previous September levels due to heavy rains in August and September. (USGS)

  6. Sediment loads in canals 18, 23, and 24 in southeastern Florida

    USGS Publications Warehouse

    Pitt, William A. J.

    1971-01-01

    Suspended-sediment concentrations and suspended-sediment discharges were determined in selected canals in St. Lucie, Martin, and Palm Beach Counties, in southeastern Florida. Sediment rating curves were developed to relate water discharge to sediment concentration at the three sites sampled. An evaluation of the concentration and sediment loads shows that larger amounts of suspended sediment were being carried into the St. Lucie River estuary than were being carried into the Loxahatchee River estuary. Peat and muck soils in areas drained for agricultural planting and citrus cultivation are readily carried by runoff water into major canals that traverse the region.

  7. Potentiometric surface of the Floridan aquifer, southwest Florida Water Management District, September 1981

    USGS Publications Warehouse

    Yobbi, D.K.; Schiner, G.R.

    1982-01-01

    A September 1981 potentiometric-surface map of the Southwest Florida Water Management District depicts the annual high water-level period. Water levels in most wells measured in September 1981 are equal to or higher than in May 1981. Levels averaged about 26 feet higher in the southern part of the area and 5 feet in the north. In the agricultural sections of southern Hillsborough, Hardee, southwestern Polk, northwestern De Soto, and Manatee Counties, water levels increased 10 to 46 feet. From September 1980 to September 1981, water levels ranged from a decrease of 11 feet in Citrus County to an increase of 9 feet in southern Hillsborough County. (USGS)

  8. Potentiometric surface of Floridan aquifer, Southwest Florida Water Management District and adjacent areas, September 1977

    USGS Publications Warehouse

    Ryder, P.D.; Mills, L.R.; Laughlin, C.P.

    1978-01-01

    A potentiometric-surface map of the Southwest Florida Water Management District depicts the annual high water-level period. Potentiometric levels increased 15 to 30 feet between May 1977 and September 1977 in the citrus and farming sections of southeastern Hillsborough, northern Hardee, and southwestern Polk Counties. These areas are widely affected by pumpage for irrigation and have the greatest range in water-level fluctuations between the low and high water-level periods. Water-level rises in coastal, northern, and southern areas of the Water Management District ranged from 0 to 15 feet. (Woodard-USGS)

  9. EXAMPLES OF LANDFILL-GENERATED PLUMES IN LOW-RELIEF AREAS, SOUTHEAST FLORIDA.

    USGS Publications Warehouse

    Russell, Gary M.; Stewart, Mark; Higer, Aaron L.

    1987-01-01

    Examples of effects of low topographic relief are noted in southeast Florida where water-table gradients are 7 multiplied by 10** minus **4 to 5 multiplied by 10** minus **4 feet per foot. Water-table mounding beneath the landfill and the drainage effects of nearby ditches and well have created multiple leachate plumes in Stuart where one plume migrated in a direction opposite to the apparent regional gradient. In Coral Springs analysis suggests a bifurcating plume migrating along two narrow zones. In Fort Pierce it was difficult to detect leachate because of mineralized irrigation water and fertilizer runoff from an adjacent citrus grove.

  10. Water withdrawals in Florida, 2012

    USGS Publications Warehouse

    Marella, Richard L.

    2015-09-01

    The largest percentage of freshwater withdrawals was from the South Florida Water Management District (46 percent), followed by the St. Johns River Water Management District (20 percent), Southwest Florida Water Management District (19 percent), Northwest Florida Water Management District (9 percent), and Suwannee River Water Management District (6 percent). The South Florida Water Management District accounted for the largest percentage of freshwater withdrawals for public-supply use (46 percent), commercial-industrial-mining self-supplied use (24 percent), agricultural self-supplied use (59 percent), and recreational-landscape irrigation use (63 percent). The Northwest Florida Water Management District accounted for the largest percentage of freshwater withdrawals for power-generation use (44 percent), and the Southwest Florida Water Management District accounted for the largest percentage of saline-water withdrawals for power-generation use (58 percent).

  11. Antimicrobial nanoemulsion formulation with improved penetration of foliar spray through citrus leaf cuticles to control citrus Huanglongbing

    Technology Transfer Automated Retrieval System (TEKTRAN)

    Huanglongbing (HLB) is one of the most serious citrus diseases that threaten citrus industry worldwide. Because Candidatus Liberibacter asiaticus (Las) resides in citrus phloem, it is difficult to deliver an effective chemical compound into the phloem for control of HLB. In this study, a transcuticu...

  12. Overexpression of a modified plant thionin enhances disease resistance to citrus canker and huanglongbing (HLB, citrus greening)

    Technology Transfer Automated Retrieval System (TEKTRAN)

    Huanglongbing (HLB or citrus greening disease) caused by Candidatus Liberibacter asiaticus (Las) is a great threat to the United States citrus industry. Citrus canker is also an economically important disease associated with a bacterial pathogen (Xanthomonas citri). In this study, we characterized e...

  13. Degradation products of citrus volatile organic compounds (VOCs) acting as phagostimulants that increase probing behavior of Asian citrus psyllid

    Technology Transfer Automated Retrieval System (TEKTRAN)

    Volatile phytochemicals play a role in orientation by phytophagous insects. We studied antennal and behavioral responses of the Asian citrus psyllid, Diaphorina citri Kuwayama, vector of the citrus greening disease pathogen. Little or no response to citrus leaf volatiles was detected by electroanten...

  14. Does citrus leaf miner impair hydraulics and fitness of citrus host plants?

    PubMed

    Raimondo, Fabio; Trifilò, Patrizia; Gullo, Maria A Lo

    2013-12-01

    Gas exchange and hydraulic features were measured in leaves of three different Citrus species (Citrus aurantium L., Citrus limon L., Citrus  ×  paradisii Macfad) infested by Phyllocnistis citrella Staiton, with the aim to quantify the impact of this pest on leaf hydraulics and, ultimately, on plant fitness. Infested leaves were characterized by the presence on the leaf blade of typical snake-shaped mines and, in some cases, of a crumpled leaf blade. Light microscopy showed that leaf crumpling was induced by damage to the cuticular layer. In all three Citrus species examined: (a) the degree of infestation did not exceed 10% of the total surface area of infested plants; (b) control and infested leaves showed similar values of minimum diurnal leaf water potential, leaf hydraulic conductance and functional vein density; and (c) maximum diurnal values of stomatal conductance to water vapour, transpiration rate and photosynthetic rate (An) were similar in both control leaves and the green areas of infested leaves. A strong reduction of An was recorded only in mined leaf areas. Our data suggest that infestation with P. citrella does not cause conspicuous plant productivity reductions in young Citrus plants, at least not in the three Citrus species studied here.

  15. Florida's propagation report

    NASA Technical Reports Server (NTRS)

    Helmken, Henry; Henning, Rudolf

    1994-01-01

    One of the key goals of the Florida Center is to obtain a maximum of useful information on propagation behavior unique to its subtropical weather and subtropical climate. Such weather data is of particular interest when it is (or has the potential to become) useful for developing and implementing techniques to compensate for adverse weather effects. Also discussed are data observations, current challenges, CDF's, sun movement, and diversity experiments.

  16. Orlando, Florida, USA

    NASA Technical Reports Server (NTRS)

    1991-01-01

    Much of central Florida, including this detailed view of Orlando (28.5N, 81.0W) can be seen in this single photo. Disney World is at the top center of the scene and the crescent shaped Lake Tohopekaliga is near the bottom. The large round lakes are believed to be sinkholes formed during glacial times when ocean levels were several hundred feet lower than the present. Linear patterns east of Orlando are thought to be ancient shoreline ridges.

  17. Mercury- Distributed Metadata Management, Data Discovery and Access System

    NASA Astrophysics Data System (ADS)

    Palanisamy, Giri; Wilson, Bruce E.; Devarakonda, Ranjeet; Green, James M.

    2007-12-01

    Mercury is a federated metadata harvesting, search and retrieval tool based on both open source and ORNL- developed software. It was originally developed for NASA, and the Mercury development consortium now includes funding from NASA, USGS, and DOE. Mercury supports various metadata standards including XML, Z39.50, FGDC, Dublin-Core, Darwin-Core, EML, and ISO-19115 (under development). Mercury provides a single portal to information contained in disparate data management systems. It collects metadata and key data from contributing project servers distributed around the world and builds a centralized index. The Mercury search interfaces then allow the users to perform simple, fielded, spatial and temporal searches across these metadata sources. This centralized repository of metadata with distributed data sources provides extremely fast search results to the user, while allowing data providers to advertise the availability of their data and maintain complete control and ownership of that data. Mercury supports various projects including: ORNL DAAC, NBII, DADDI, LBA, NARSTO, CDIAC, OCEAN, I3N, IAI, ESIP and ARM. The new Mercury system is based on a Service Oriented Architecture and supports various services such as Thesaurus Service, Gazetteer Web Service and UDDI Directory Services. This system also provides various search services including: RSS, Geo-RSS, OpenSearch, Web Services and Portlets. Other features include: Filtering and dynamic sorting of search results, book-markable search results, save, retrieve, and modify search criteria.

  18. AstroData Descriptors: A Generic Metadata Interface

    NASA Astrophysics Data System (ADS)

    Anderson, K.; Labrie, K.; Simpson, M.; Turner, J.

    2015-09-01

    Gemini Observatory has developed a dataset abstraction framework called AstroData. The framework is generic in that it defines a consistent abstraction layer for any telescope's observational and calibration data. As part of this framework, a system of what are called dataset “descriptors” are implemented to provide a generic and completely consistent interface to metadata of any dataset accommodated by an AstroData package. These descriptors are explicitly defined for a particular type of dataset. AstroData further defines a “built-in” dataset typing system. Because metadata vary across observatories and instruments, AstroData type determination builds the descriptors interface dynamically once the dataset types have been asserted. Descriptors are implemented as logically named methods on an instance of AstroData and as such, may be defined to return, not only metadata directly, but also calculated metadata derivatives. Descriptors always return a DescriptorValue object, a container object with all the pertinent metadata requested, regardless of its initial form or primitive data type.

  19. Interoperable Solar Data and Metadata via LISIRD 3

    NASA Astrophysics Data System (ADS)

    Wilson, A.; Lindholm, D. M.; Pankratz, C. K.; Snow, M. A.; Woods, T. N.

    2015-12-01

    LISIRD 3 is a major upgrade of the LASP Interactive Solar Irradiance Data Center (LISIRD), which serves several dozen space based solar irradiance and related data products to the public. Through interactive plots, LISIRD 3 provides data browsing supported by data subsetting and aggregation. Incorporating a semantically enabled metadata repository, LISIRD 3 users see current, vetted, consistent information about the datasets offered. Users can now also search for datasets based on metadata fields such as dataset type and/or spectral or temporal range. This semantic database enables metadata browsing, so users can discover the relationships between datasets, instruments, spacecraft, mission and PI. The database also enables creation and publication of metadata records in a variety of formats, such as SPASE or ISO, making these datasets more discoverable. The database also enables the possibility of a public SPARQL endpoint, making the metadata browsable in an automated fashion. LISIRD 3's data access middleware, LaTiS, provides dynamic, on demand reformatting of data and timestamps, subsetting and aggregation, and other server side functionality via a RESTful OPeNDAP compliant API, enabling interoperability between LASP datasets and many common tools. LISIRD 3's templated front end design, coupled with the uniform data interface offered by LaTiS, allows easy integration of new datasets. Consequently the number and variety of datasets offered by LISIRD has grown to encompass several dozen, with many more to come. This poster will discuss design and implementation of LISIRD 3, including tools used, capabilities enabled, and issues encountered.

  20. Detection of citrus canker and Huanglongbing using fluorescence imaging spectroscopy and support vector machine technique.

    PubMed

    Wetterich, Caio Bruno; Felipe de Oliveira Neves, Ruan; Belasque, José; Marcassa, Luis Gustavo

    2016-01-10

    Citrus canker and Huanglongbing (HLB) are citrus diseases that represent a serious threat to the citrus production worldwide and may cause large economic losses. In this work, we combined fluorescence imaging spectroscopy (FIS) and a machine learning technique to discriminate between these diseases and other ordinary citrus conditions that may be present at citrus orchards, such as citrus scab and zinc deficiency. Our classification results are highly accurate when discriminating citrus canker from citrus scab (97.8%), and HLB from zinc deficiency (95%). These results show that it is possible to accurately identify citrus diseases that present similar symptoms.

  1. Geospatial characteristics of Florida's coastal and offshore environments: Distribution of important habitats for coastal and offshore biological resources and offshore sand resources

    USGS Publications Warehouse

    Demopoulos, Amanda W.J.; Foster, Ann M.; Jones, Michal L.; Gualtieri, Daniel J.

    2011-01-01

    The Geospatial Characteristics GeoPDF of Florida's Coastal and Offshore Environments is a comprehensive collection of geospatial data describing the political boundaries and natural resources of Florida. This interactive map provides spatial information on bathymetry, sand resources, and locations of important habitats (for example, Essential Fish Habitats (EFH), nesting areas, strandings) for marine invertebrates, fish, reptiles, birds, and marine mammals. The map should be useful to coastal resource managers and others interested in marine habitats and submerged obstructions of Florida's coastal region. In particular, as oil and gas explorations continue to expand, the map can be used to explore information regarding sensitive areas and resources in the State of Florida. Users of this geospatial database will have access to synthesized information in a variety of scientific disciplines concerning Florida's coastal zone. This powerful tool provides a one-stop assembly of data that can be tailored to fit the needs of many natural resource managers. The map was originally developed to assist the Bureau of Ocean Energy Management, Regulation, and Enforcement (BOEMRE) and coastal resources managers with planning beach restoration projects. The BOEMRE uses a systematic approach in planning the development of submerged lands of the Continental Shelf seaward of Florida's territorial waters. Such development could affect the environment. BOEMRE is required to ascertain the existing physical, biological, and socioeconomic conditions of the submerged lands and estimate the impact of developing these lands. Data sources included the National Oceanic and Atmospheric Administration, BOEMRE, Florida Department of Environmental Protection, Florida Geographic Data Library, Florida Fish and Wildlife Conservation Commission, Florida Natural Areas Inventory, and the State of Florida, Bureau of Archeological Research. Federal Geographic Data Committee (FGDC) compliant metadata are

  2. Geospatial characteristics of Florida's coastal and offshore environments: Coastal habitats, artificial reefs, wrecks, dumping grounds, harbor obstructions and offshore sand resources

    USGS Publications Warehouse

    Demopoulos, Amanda W.J.; Foster, Ann M.; Jones, Michal L.; Gualtieri, Daniel J.

    2011-01-01

    The Geospatial Characteristics GeoPDF of Florida's Coastal and Offshore Environments is a comprehensive collection of geospatial data describing the political boundaries and natural resources of Florida. This interactive map provides spatial information on bathymetry, sand resources, coastal habitats, artificial reefs, shipwrecks, dumping grounds, and harbor obstructions. The map should be useful to coastal resource managers and others interested in marine habitats and submerged obstructions of Florida's coastal region. In particular, as oil and gas explorations continue to expand, the map may be used to explore information regarding sensitive areas and resources in the State of Florida. Users of this geospatial database will have access to synthesized information in a variety of scientific disciplines concerning Florida's coastal zone. This powerful tool provides a one-stop assembly of data that can be tailored to fit the needs of many natural resource managers. The map was originally developed to assist the Bureau of Ocean Energy Management, Regulation, and Enforcement (BOEMRE) and coastal resources managers with planning beach restoration projects. The BOEMRE uses a systematic approach in planning the development of submerged lands of the Continental Shelf seaward of Florida's territorial waters. Such development could affect the environment. BOEMRE is required to ascertain the existing physical, biological, and socioeconomic conditions of the submerged lands and estimate the impact of developing these lands. Data sources included the National Oceanic and Atmospheric Administration, BOEMRE, Florida Department of Environmental Protection, Florida Geographic Data Library, Florida Fish and Wildlife Conservation Commission, Florida Natural Areas Inventory, and the State of Florida, Bureau of Archeological Research. Federal Geographic Data Committee (FGDC) compliant metadata are provided as attached xml files for all geographic information system (GIS) layers.

  3. Noninvasive maturity detection of citrus with machine vision

    NASA Astrophysics Data System (ADS)

    Ying, Yibin; Xu, Zhenggang; Fu, Xiaping; Liu, Yande

    2004-03-01

    A computer vision system was established to explore a method for citrus maturity detection. The surface color information and the ratio of total soluble solid to titratable acid (TSS/TA) were used as maturity indexes of citrus. The spectral reflectance properties with different color were measured by UV-240 ultraviolet and visible spectrophotometer. The biggest discrepancy of gray levels between citrus pixels and background pixels was in blue component image by image background segmentation. Dynamic threshold method for background segmentation had best result in blue component image. Methods for citrus image color description were studied. The citrus spectral reflectance experiments showed that green surface and saffron surface of citrus were of highest spectral reflectance at the wavelength of 700nm, the difference between them reached to maximum, about 53%, and the image acquired at this wavelength was of more color information for maturity detection. A triple-layer feed forward network was established to map citrus maturity from the hue frequency sequence by the mean of artificial neural network. After training, the network mapper was used to detect the maturity of the test sample set, which was composed of 252 Weizhang citrus with different maturity. The identification accuracy of mature citrus reached 79.1%, that of immature citrus was 63.6%, and the mean identification accuracy was 77.8%. This study suggested that it is feasible to detect citrus maturity non-invasively by using the computer vision system and hue frequency sequence method.

  4. Horsfall-Barratt recalibration and replicated severity estimates of citrus canker

    Technology Transfer Automated Retrieval System (TEKTRAN)

    Citrus canker is a serious disease of citrus in tropical and subtropical citrus growing regions. Accurate and precise assessment of citrus canker and other plant pathogens is needed to obtain good quality data. Citrus canker assessment data were used to ascertain some of the mechanics of the Horsfal...

  5. Principles of metadata organization at the ENCODE data coordination center.

    PubMed

    Hong, Eurie L; Sloan, Cricket A; Chan, Esther T; Davidson, Jean M; Malladi, Venkat S; Strattan, J Seth; Hitz, Benjamin C; Gabdank, Idan; Narayanan, Aditi K; Ho, Marcus; Lee, Brian T; Rowe, Laurence D; Dreszer, Timothy R; Roe, Greg R; Podduturi, Nikhil R; Tanaka, Forrest; Hilton, Jason A; Cherry, J Michael

    2016-01-01

    The Encyclopedia of DNA Elements (ENCODE) Data Coordinating Center (DCC) is responsible for organizing, describing and providing access to the diverse data generated by the ENCODE project. The description of these data, known as metadata, includes the biological sample used as input, the protocols and assays performed on these samples, the data files generated from the results and the computational methods used to analyze the data. Here, we outline the principles and philosophy used to define the ENCODE metadata in order to create a metadata standard that can be applied to diverse assays and multiple genomic projects. In addition, we present how the data are validated and used by the ENCODE DCC in creating the ENCODE Portal (https://www.encodeproject.org/). Database URL: www.encodeproject.org.

  6. MATCH: Metadata Access Tool for Climate and Health Datasets

    DOE Data Explorer

    MATCH is a searchable clearinghouse of publicly available Federal metadata (i.e. data about data) and links to datasets. Most metadata on MATCH pertain to geospatial data sets ranging from local to global scales. The goals of MATCH are to: 1) Provide an easily accessible clearinghouse of relevant Federal metadata on climate and health that will increase efficiency in solving research problems; 2) Promote application of research and information to understand, mitigate, and adapt to the health effects of climate change; 3) Facilitate multidirectional communication among interested stakeholders to inform and shape Federal research directions; 4) Encourage collaboration among traditional and non-traditional partners in development of new initiatives to address emerging climate and health issues. [copied from http://match.globalchange.gov/geoportal/catalog/content/about.page

  7. A Generic Metadata Editor Supporting System Using Drupal CMS

    NASA Astrophysics Data System (ADS)

    Pan, J.; Banks, N. G.; Leggott, M.

    2011-12-01

    Metadata handling is a key factor in preserving and reusing scientific data. In recent years, standardized structural metadata has become widely used in Geoscience communities. However, there exist many different standards in Geosciences, such as the current version of the Federal Geographic Data Committee's Content Standard for Digital Geospatial Metadata (FGDC CSDGM), the Ecological Markup Language (EML), the Geography Markup Language (GML), and the emerging ISO 19115 and related standards. In addition, there are many different subsets within the Geoscience subdomain such as the Biological Profile of the FGDC (CSDGM), or for geopolitical regions, such as the European Profile or the North American Profile in the ISO standards. It is therefore desirable to have a software foundation to support metadata creation and editing for multiple standards and profiles, without re-inventing the wheels. We have developed a software module as a generic, flexible software system to do just that: to facilitate the support for multiple metadata standards and profiles. The software consists of a set of modules for the Drupal Content Management System (CMS), with minimal inter-dependencies to other Drupal modules. There are two steps in using the system's metadata functions. First, an administrator can use the system to design a user form, based on an XML schema and its instances. The form definition is named and stored in the Drupal database as a XML blob content. Second, users in an editor role can then use the persisted XML definition to render an actual metadata entry form, for creating or editing a metadata record. Behind the scenes, the form definition XML is transformed into a PHP array, which is then rendered via Drupal Form API. When the form is submitted the posted values are used to modify a metadata record. Drupal hooks can be used to perform custom processing on metadata record before and after submission. It is trivial to store the metadata record as an actual XML file

  8. Principles of metadata organization at the ENCODE data coordination center

    PubMed Central

    Hong, Eurie L.; Sloan, Cricket A.; Chan, Esther T.; Davidson, Jean M.; Malladi, Venkat S.; Strattan, J. Seth; Hitz, Benjamin C.; Gabdank, Idan; Narayanan, Aditi K.; Ho, Marcus; Lee, Brian T.; Rowe, Laurence D.; Dreszer, Timothy R.; Roe, Greg R.; Podduturi, Nikhil R.; Tanaka, Forrest; Hilton, Jason A.; Cherry, J. Michael

    2016-01-01

    The Encyclopedia of DNA Elements (ENCODE) Data Coordinating Center (DCC) is responsible for organizing, describing and providing access to the diverse data generated by the ENCODE project. The description of these data, known as metadata, includes the biological sample used as input, the protocols and assays performed on these samples, the data files generated from the results and the computational methods used to analyze the data. Here, we outline the principles and philosophy used to define the ENCODE metadata in order to create a metadata standard that can be applied to diverse assays and multiple genomic projects. In addition, we present how the data are validated and used by the ENCODE DCC in creating the ENCODE Portal (https://www.encodeproject.org/). Database URL: www.encodeproject.org PMID:26980513

  9. Serving Fisheries and Ocean Metadata to Communities Around the World

    NASA Technical Reports Server (NTRS)

    Meaux, Melanie

    2006-01-01

    NASA's Global Change Master Directory (GCMD) assists the oceanographic community in the discovery, access, and sharing of scientific data by serving on-line fisheries and ocean metadata to users around the globe. As of January 2006, the directory holds more than 16,300 Earth Science data descriptions and over 1,300 services descriptions. Of these, nearly 4,000 unique ocean-related metadata records are available to the public, with many having direct links to the data. In 2005, the GCMD averaged over 5 million hits a month, with nearly a half million unique hosts for the year. Through the GCMD portal (http://qcrnd.nasa.qov/), users can search vast and growing quantities of data and services using controlled keywords, free-text searches or a combination of both. Users may now refine a search based on topic, location, instrument, platform, project, data center, spatial and temporal coverage. The directory also offers data holders a means to post and search their data through customized portals, i.e. online customized subset metadata directories. The discovery metadata standard used is the Directory Interchange Format (DIF), adopted in 1994. This format has evolved to accommodate other national and international standards such as FGDC and IS019115. Users can submit metadata through easy-to-use online and offline authoring tools. The directory, which also serves as a coordinating node of the International Directory Network (IDN), has been active at the international, regional and national level for many years through its involvement with the Committee on Earth Observation Satellites (CEOS), federal agencies (such as NASA, NOAA, and USGS), international agencies (such as IOC/IODE, UN, and JAXA) and partnerships (such as ESIP, IOOS/DMAC, GOSIC, GLOBEC, OBIS, and GoMODP), sharing experience, knowledge related to metadata and/or data management and interoperability.

  10. Data warehousing, metadata, and the World Wide Web

    SciTech Connect

    Yow, T.G.; Smith, A.W.; Daugherty, P.F.

    1997-04-16

    The connection between data warehousing and the metadata. used to catalog and locate warehouse data is obvious, but what is the connection between data warehousing, metadata, and the World Wide Web (WWW)? Specifically, the WWW can be used to allow users to search metadata (data about the data) and retrieve data from a warehouse database. In addition, the Internet/Intranet can be used to manage the metadata in archive databases and to streamline the database administration functions of a large archive center. The Oak Ridge National Laboratory`s (ORNL`s) Distributed Active Archive Center (DAAC) is a data archive and distribution center for the National Air and Space Administration`s (NASA`s) Earth Observing System Data and Information System (EOSDIS); the ORNL DAAC provides access to tabular and imagery datasets used in ecological and environmental research. To support this effort, we have taken advantage of the rather unique and user-friendly features of the WWW to (1) allow users to search for and download the data we archive and (2) provide DAAC developers with effective metadata and data management tools. In particular, the ORNL DAAC has developed the Biogeochemical Information Ordering Management Environment (BIOME), a WWW search-and-order system, as well as a WWW-based database administrator`s (DBA`s) tool suite designed to assist the site`s DBA in the management of archive metadata and databases and several other DBA functions that are essential to site management. This paper is a case study of how the ORNL DAAC uses the WWW to both manage data and allow access to its data warehouse.

  11. In Interactive, Web-Based Approach to Metadata Authoring

    NASA Technical Reports Server (NTRS)

    Pollack, Janine; Wharton, Stephen W. (Technical Monitor)

    2001-01-01

    NASA's Global Change Master Directory (GCMD) serves a growing number of users by assisting the scientific community in the discovery of and linkage to Earth science data sets and related services. The GCMD holds over 8000 data set descriptions in Directory Interchange Format (DIF) and 200 data service descriptions in Service Entry Resource Format (SERF), encompassing the disciplines of geology, hydrology, oceanography, meteorology, and ecology. Data descriptions also contain geographic coverage information, thus allowing researchers to discover data pertaining to a particular geographic location, as well as subject of interest. The GCMD strives to be the preeminent data locator for world-wide directory level metadata. In this vein, scientists and data providers must have access to intuitive and efficient metadata authoring tools. Existing GCMD tools are not currently attracting. widespread usage. With usage being the prime indicator of utility, it has become apparent that current tools must be improved. As a result, the GCMD has released a new suite of web-based authoring tools that enable a user to create new data and service entries, as well as modify existing data entries. With these tools, a more interactive approach to metadata authoring is taken, as they feature a visual "checklist" of data/service fields that automatically update when a field is completed. In this way, the user can quickly gauge which of the required and optional fields have not been populated. With the release of these tools, the Earth science community will be further assisted in efficiently creating quality data and services metadata. Keywords: metadata, Earth science, metadata authoring tools

  12. Management of the Citrus Nematode, Tylenchulus semipenetrans

    PubMed Central

    Verdejo-Lucas, S.; McKenry, M. V.

    2004-01-01

    Of the many nematode species that parasitize citrus, Tylenchulus semipenetrans is the most important on a worldwide basis. Management of the citrus nematode remains problematic as no one tactic gives adequate control of the nematode. An overall management strategy must include such components as site selection, use of non-infected nursery stock, use of at lease one post-plant nematode control tactic, and careful management of other elements of the environment that may stress the trees. Nematicides continue to play a key role in management of this pest. Optimum results require careful attention to application techniques. PMID:19262822

  13. Biogenic emissions from Citrus species in California

    NASA Astrophysics Data System (ADS)

    Fares, Silvano; Gentner, Drew R.; Park, Jeong-Hoo; Ormeno, Elena; Karlik, John; Goldstein, Allen H.

    2011-09-01

    Biogenic Volatile Organic Compounds (BVOC) emitted from plants are the dominant source of reduced carbon chemicals to the atmosphere and are important precursors to the photochemical production of ozone and secondary organic aerosols. Considering the extensive land used for agriculture, cultivated Citrus plantations may play an important role in the chemistry of the atmosphere especially in regions such as the Central Valley of California. Moreover, the BVOC emissions from Citrus species have not been characterized in detail and more species-specific inputs for regional models of BVOC emissions are needed. In this study, we measured the physiological parameters and emissions of the most relevant BVOC (oxygenated compounds, monoterpenes, and sesquiterpenes) for four predominant Citrus species planted in California ( Citrus sinensis var. 'Parent Navel', Citrus limon var. 'Meyer', Citrus reticulata var. 'W. Murcott' and 'Clementine'). We used two analytical techniques to measure a full range of BVOC emitted: Proton Transfer Reaction Mass Spectrometry (PTR-MS) and gas chromatography with mass spectrometry. Methanol, followed by acetone and acetaldehyde, were the dominant BVOC emitted from lemon and mandarin trees (basal emission rates up to 300 ng(C) g(DW) -1 h -1), while oxygenated monoterpenes, monoterpenes, and sesquiterpenes were the main BVOC emitted from orange trees (basal emission rates up to = 2500 ng(C) g(DW) -1 h -1). Light and temperature-dependent algorithms were better predictors of methanol, acetaldehyde, acetone, isoprene and monoterpenes for all the Citrus species. Whereas, temperature-dependent algorithms were better predictors of oxygenated monoterpenes, and sesquiterpenes. We observed that flowering increased emissions from orange trees by an order of magnitude with the bulk of BVOC emissions being comprised of monoterpenes, sesquiterpenes, and oxygenated monoterpenes. Chemical speciation of BVOC emissions show that the various classes of terpene

  14. A novel framework for assessing metadata quality in epidemiological and public health research settings.

    PubMed

    McMahon, Christiana; Denaxas, Spiros

    2016-01-01

    Metadata are critical in epidemiological and public health research. However, a lack of biomedical metadata quality frameworks and limited awareness of the implications of poor quality metadata renders data analyses problematic. In this study, we created and evaluated a novel framework to assess metadata quality of epidemiological and public health research datasets. We performed a literature review and surveyed stakeholders to enhance our understanding of biomedical metadata quality assessment. The review identified 11 studies and nine quality dimensions; none of which were specifically aimed at biomedical metadata. 96 individuals completed the survey; of those who submitted data, most only assessed metadata quality sometimes, and eight did not at all. Our framework has four sections: a) general information; b) tools and technologies; c) usability; and d) management and curation. We evaluated the framework using three test cases and sought expert feedback. The framework can assess biomedical metadata quality systematically and robustly.

  15. A novel framework for assessing metadata quality in epidemiological and public health research settings

    PubMed Central

    McMahon, Christiana; Denaxas, Spiros

    2016-01-01

    Metadata are critical in epidemiological and public health research. However, a lack of biomedical metadata quality frameworks and limited awareness of the implications of poor quality metadata renders data analyses problematic. In this study, we created and evaluated a novel framework to assess metadata quality of epidemiological and public health research datasets. We performed a literature review and surveyed stakeholders to enhance our understanding of biomedical metadata quality assessment. The review identified 11 studies and nine quality dimensions; none of which were specifically aimed at biomedical metadata. 96 individuals completed the survey; of those who submitted data, most only assessed metadata quality sometimes, and eight did not at all. Our framework has four sections: a) general information; b) tools and technologies; c) usability; and d) management and curation. We evaluated the framework using three test cases and sought expert feedback. The framework can assess biomedical metadata quality systematically and robustly. PMID:27570670

  16. Facilitating the production of ISO-compliant metadata of geospatial datasets

    NASA Astrophysics Data System (ADS)

    Giuliani, Gregory; Guigoz, Yaniss; Lacroix, Pierre; Ray, Nicolas; Lehmann, Anthony

    2016-02-01

    Metadata are recognized as an essential element to enable efficient and effective discovery of geospatial data published in spatial data infrastructures (SDI). However, metadata production is still perceived as a complex, tedious and time-consuming task. This typically results in little metadata production and can seriously hinder the objective of facilitating data discovery. In response to this issue, this paper presents a proof of concept based on an interoperable workflow between a data publication server and a metadata catalog to automatically generate ISO-compliant metadata. The proposed approach facilitates metadata creation by embedding this task in daily data management workflows; ensures that data and metadata are permanently up-to-date; significantly reduces the obstacles of metadata production; and potentially facilitates contributions to initiatives like the Global Earth Observation System of Systems (GEOSS) by making geospatial resources discoverable.

  17. Applications of the LBA-ECO Metadata Warehouse

    NASA Astrophysics Data System (ADS)

    Wilcox, L.; Morrell, A.; Griffith, P. C.

    2006-05-01

    The LBA-ECO Project Office has developed a system to harvest and warehouse metadata resulting from the Large-Scale Biosphere Atmosphere Experiment in Amazonia. The harvested metadata is used to create dynamically generated reports, available at www.lbaeco.org, which facilitate access to LBA-ECO datasets. The reports are generated for specific controlled vocabulary terms (such as an investigation team or a geospatial region), and are cross-linked with one another via these terms. This approach creates a rich contextual framework enabling researchers to find datasets relevant to their research. It maximizes data discovery by association and provides a greater understanding of the scientific and social context of each dataset. For example, our website provides a profile (e.g. participants, abstract(s), study sites, and publications) for each LBA-ECO investigation. Linked from each profile is a list of associated registered dataset titles, each of which link to a dataset profile that describes the metadata in a user-friendly way. The dataset profiles are generated from the harvested metadata, and are cross-linked with associated reports via controlled vocabulary terms such as geospatial region. The region name appears on the dataset profile as a hyperlinked term. When researchers click on this link, they find a list of reports relevant to that region, including a list of dataset titles associated with that region. Each dataset title in this list is hyperlinked to its corresponding dataset profile. Moreover, each dataset profile contains hyperlinks to each associated data file at its home data repository and to publications that have used the dataset. We also use the harvested metadata in administrative applications to assist quality assurance efforts. These include processes to check for broken hyperlinks to data files, automated emails that inform our administrators when critical metadata fields are updated, dynamically generated reports of metadata records that link

  18. 7 CFR 301.76-2 - Regulated articles for Asian citrus psyllid and citrus greening.

    Code of Federal Regulations, 2011 CFR

    2011-01-01

    ... and plant parts (including leaves), except fruit, of: Aegle marmelos, Aeglopsis chevalieri, Afraegle... asiatica, Triphasia trifolia, Vepris (=Toddalia) lanceolata, and Zanthoxylum fagara. (b) Propagative seed..., the movement of propagative seed of these species from an area quarantined for citrus greening...

  19. Florida's Urban Environment. Teacher's Guide.

    ERIC Educational Resources Information Center

    Brown, Mark; And Others

    This unit begins with the historical development of Florida and analyzes development from the perspective of an energy system. The unit deals with the urbanization process currently taking place in Florida and explores where it may be leading. Lessons are designed for individualized instruction or for use by students in small groups. In some cases…

  20. FREEZING WEATHER IN PENINSULAR FLORIDA,

    DTIC Science & Technology

    The synoptic situations which bring serious freezing weather to the Florida Peninsula are discussed generally by presenting various weather charts...scheme is presented which might permanently eliminate serious freezing in the Florida Peninsula. Before any solution can be reached, it t necessary to be

  1. Florida's Nurses Speak to Educators.

    ERIC Educational Resources Information Center

    McCulloch, Etta S.

    A questionnaire was sent to 5000 Florida hospitals to obtain information from non-members of the Florida Nurses Association (FNA) and to compare the data with that of FNA members on questions relevant to nursing education. Among findings from the 22-item survey, 84 percent of which were returned, were that 80 percent disagreed that licensing…

  2. The Florida Library History Project.

    ERIC Educational Resources Information Center

    Jasper, Catherine; McCook, Kathleen de la Pena

    The Florida Library History Project (FLHP) began in January 1998. Letters requesting histories were sent to all public libraries in Florida with follow-up letters sent after an initial response was received from the libraries. E-mail messages were sent out to FL-LIB listservs encouraging participation in the project. A poster session was presented…

  3. Inhalant Use in Florida Youth

    ERIC Educational Resources Information Center

    Siqueira, Lorena; Crandall, Lee A.

    2006-01-01

    Purpose: To determine (1) the prevalence of use, (2) risk and protective factors for use of inhalants in Florida youth. Methods: The Florida Youth Substance Abuse Survey 2004 is a comprehensive assessment of youth substance abuse attitudes and practices obtained by sampling youth from sixty-five counties. Results: The sample consisted of 60,345…

  4. Mutations of β-tubulin codon 198 or 200 indicate thiabendazole resistance among isolates of Penicillium digitatum collected from citrus in Taiwan.

    PubMed

    Lee, Miin-Huey; Pan, Shiah-Mei; Ngu, Thieng Wui; Ng, Tieng-Wui; Chen, Po-Sheng; Wang, Li-Yuan; Chung, Kuang-Ren

    2011-11-01

    Penicillium digitatum causes green mold on citrus, resulting in severe postharvest fruit decay and economic losses in many citrus-producing areas of the world. Forty isolates of P. digitatum were cultured from citrus groves, packinghouses, and local markets in Taiwan, and assessed quantitatively for their sensitivity to thiabendazole (TBZ) fungicide. Sensitivity assays using a 96-well microtiter plate revealed that, of 40 isolates examined, only one isolate collected from fruit produced in Taiwan and two isolates from Florida-imported citrus fruit were sensitive to TBZ. The concentration of TBZ causing a 50% growth reduction (EC(50)) was less than 1 μg/mL. The remaining 37 isolates could tolerate high concentrations of TBZ, with an EC(50) greater than 80 μg/mL. Overall, more than 97% of P. digitatum isolates tested in Taiwan were found to be resistant to TBZ. In vitro assays also revealed the ineffectiveness of TBZ for controlling a TBZ-resistant isolate on sweet oranges. A sequence analysis of β-tubulin genes revealed that all TBZ-resistant isolates displayed a single transversion point mutation, resulting in a change at either amino acid 198 (glutamic acid→glutamine) or 200 (phenylalanine→tyrosine). The repetitive use of a single fungicide over several decades has favored the selection and dominance of TBZ-resistant isolates of P. digitatum.

  5. Amplification of DNA of Xanthomonas axonopodis pv. citri from historic citrus canker herbarium specimens.

    PubMed

    Li, Wenbin; Brlansky, Ronald H; Hartung, John S

    2006-05-01

    Herbaria are important resources for the study of the origins and dispersal of plant pathogens, particularly bacterial plant pathogens that incite local lesions in which large numbers of pathogen genomes are concentrated. Xanthomonas axonopodis pv. citri (Xac), the causal agent of citrus bacterial canker disease, is a notable example of such a pathogen. The appearance of novel strains of the pathogen in Florida and elsewhere make it increasingly important to understand the relationships among strains of this pathogen. USDA-ARS at Beltsville, Maryland maintains approximately 700 herbarium specimens with citrus canker disease lesions up to 90 years old, originally collected from all over the world, and so is an important resource for phytogeographic studies of this bacterium. Unfortunately, DNA in herbarium specimens is degraded and may contain high levels of inhibitors of PCR. In this study, we compared a total of 23 DNA isolation techniques in combination with 31 novel primer pairs in order to develop an efficient protocol for the analysis of Xac DNA in herbarium specimens. We identified the most reliable extraction method, identified in terms of successful amplification by our panel of 31 primer pairs. We also identified the most robust primer pairs, identified as successful in the largest number of extracts prepared by different methods. We amplified Xac genomic sequences up to 542 bp long from herbarium samples up to 89 years old. Primers varied in effectiveness, with some primer pairs amplifying Xac DNA from a 1/10,000 dilution of extract from a single lesion from a citrus canker herbarium specimen. Our methodology will be useful to identify pathogens and perform molecular analyses of bacterial and possibly fungal genomes from herbarium specimens.

  6. Field Evaluation of Plant Defense Inducers for the Control of Citrus Huanglongbing.

    PubMed

    Li, Jinyun; Trivedi, Pankaj; Wang, Nian

    2016-01-01

    Huanglongbing (HLB) is currently the most economically devastating disease of citrus worldwide and no established cure is available. Defense inducing compounds are able to induce plant resistance effective against various pathogens. In this study the effects of various chemical inducers on HLB diseased citrus were evaluated in four groves (three with sweet orange and one with mandarin) in Florida (United States) for two to four consecutive growing seasons. Results have demonstrated that plant defense inducers including β-aminobutyric acid (BABA), 2,1,3-benzothiadiazole (BTH), and 2,6-dichloroisonicotinic acid (INA), individually or in combination, were effective in suppressing progress of HLB disease. Ascorbic acid (AA) and the nonmetabolizable glucose analog 2-deoxy-D-glucose (2-DDG) also exhibited positive control effects on HLB. After three or four applications for each season, the treatments AA (60 to 600 µM), BABA (0.2 to 1.0 mM), BTH (1.0 mM), INA (0.1 mM), 2-DDG (100 µM), BABA (1.0 mM) plus BTH (1.0 mM), BTH (1.0 mM) plus AA (600 µM), and BTH (1.0 mM) plus 2-DDG (100 µM) slowed down the population growth in planta of 'Candidatus Liberibacter asiaticus', the putative pathogen of HLB and reduced HLB disease severity by approximately 15 to 30% compared with the nontreated control, depending on the age and initial HLB severity of infected trees. These treatments also conferred positive effect on fruit yield and quality. Altogether, these findings indicate that plant defense inducers may be a useful strategy for the management of citrus HLB.

  7. Sequences of Citrus Tristeza Virus Separated in Time and Space Are Essentially Identical†

    PubMed Central

    Albiach-Martí, María R.; Mawassi, Munir; Gowda, Siddarame; Satyanarayana, Tatineni; Hilf, Mark E.; Shanker, Savita; Almira, Ernesto C.; Vives, María C.; López, Carmelo; Guerri, Jose; Flores, Ricardo; Moreno, Pedro; Garnsey, Steve M.; Dawson, William O.

    2000-01-01

    The first Citrus tristeza virus (CTV) genomes completely sequenced (19.3-kb positive-sense RNA), from four biologically distinct isolates, are unexpectedly divergent in nucleotide sequence (up to 60% divergence). Understanding of whether these large sequence differences resulted from recent evolution is important for the design of disease management strategies, particularly the use of genetically engineered mild (essentially symptomless)-strain cross protection and RNA-mediated transgenic resistance. The complete sequence of a mild isolate (T30) which has been endemic in Florida for about a century was found to be nearly identical to the genomic sequence of a mild isolate (T385) from Spain. Moreover, samples of sequences of other isolates from distinct geographic locations, maintained in different citrus hosts and also separated in time (B252 from Taiwan, B272 from Colombia, and B354 from California), were nearly identical to the T30 sequence. The sequence differences between these isolates were within or near the range of variability of the T30 population. A possible explanation for these results is that the parents of isolates T30, T385, B252, B272, and B354 have a common origin, probably Asia, and have changed little since they were dispersed throughout the world by the movement of citrus. Considering that the nucleotide divergence among the other known CTV genomes is much greater than those expected for strains of the same virus, the remarkable similarity of these five isolates indicates a high degree of evolutionary stasis in some CTV populations. PMID:10888625

  8. Volatile constituents of wild citrus Mangshanyegan (Citrus nobilis Lauriro) peel oil.

    PubMed

    Liu, Cuihua; Cheng, Yunjiang; Zhang, Hongyan; Deng, Xiuxin; Chen, Feng; Xu, Juan

    2012-03-14

    Volatiles of a wild mandarin, Mangshanyegan (Citrus nobilis Lauriro), were characterized by GC-MS, and their aroma active compounds were identified by aroma extract dilution analysis (AEDA) and gas chromatography-olfactometry (GC-O). The volatile profile of Mangshanyegan was compared with those of other four citrus species, Kaopan pummelo (Citrus grandis), Eureka lemon (Citrus limon), Huangyanbendizao tangerine (Citrus reticulata), and Seike navel orange (Citrus sinensis). Monoterpene hydrocarbons predominated in Mangshanyegan, in particular d-limonene and β-myrcene, which accounted for 85.75 and 10.89% of total volatiles, respectively. Among the 12 compounds with flavor dilution factors (FD) = 27, 8 oxygenated compounds, including (Z)- and (E)-linalool oxides, were present only in Mangshanyegan. The combined results of GC-O, quantitative analysis, odor activity values (OAVs), and omission tests revealed that β-myrcene and (Z)- and (E)-linalool oxides were the characteristic aroma compounds of Mangshanyegan, contributing to the balsamic and floral notes of its aroma.

  9. Metadata squared: enhancing its usability for volunteered geographic information and the GeoWeb

    USGS Publications Warehouse

    Poore, Barbara S.; Wolf, Eric B.; Sui, Daniel Z.; Elwood, Sarah; Goodchild, Michael F.

    2013-01-01

    The Internet has brought many changes to the way geographic information is created and shared. One aspect that has not changed is metadata. Static spatial data quality descriptions were standardized in the mid-1990s and cannot accommodate the current climate of data creation where nonexperts are using mobile phones and other location-based devices on a continuous basis to contribute data to Internet mapping platforms. The usability of standard geospatial metadata is being questioned by academics and neogeographers alike. This chapter analyzes current discussions of metadata to demonstrate how the media shift that is occurring has affected requirements for metadata. Two case studies of metadata use are presented—online sharing of environmental information through a regional spatial data infrastructure in the early 2000s, and new types of metadata that are being used today in OpenStreetMap, a map of the world created entirely by volunteers. Changes in metadata requirements are examined for usability, the ease with which metadata supports coproduction of data by communities of users, how metadata enhances findability, and how the relationship between metadata and data has changed. We argue that traditional metadata associated with spatial data infrastructures is inadequate and suggest several research avenues to make this type of metadata more interactive and effective in the GeoWeb.

  10. Quality Assurance for Digital Learning Object Repositories: Issues for the Metadata Creation Process

    ERIC Educational Resources Information Center

    Currier, Sarah; Barton, Jane; O'Beirne, Ronan; Ryan, Ben

    2004-01-01

    Metadata enables users to find the resources they require, therefore it is an important component of any digital learning object repository. Much work has already been done within the learning technology community to assure metadata quality, focused on the development of metadata standards, specifications and vocabularies and their implementation…

  11. A Model for the Creation of Human-Generated Metadata within Communities

    ERIC Educational Resources Information Center

    Brasher, Andrew; McAndrew, Patrick

    2005-01-01

    This paper considers situations for which detailed metadata descriptions of learning resources are necessary, and focuses on human generation of such metadata. It describes a model which facilitates human production of good quality metadata by the development and use of structured vocabularies. Using examples, this model is applied to single and…

  12. Turning Data into Information: Assessing and Reporting GIS Metadata Integrity Using Integrated Computing Technologies

    ERIC Educational Resources Information Center

    Mulrooney, Timothy J.

    2009-01-01

    A Geographic Information System (GIS) serves as the tangible and intangible means by which spatially related phenomena can be created, analyzed and rendered. GIS metadata serves as the formal framework to catalog information about a GIS data set. Metadata is independent of the encoded spatial and attribute information. GIS metadata is a subset of…

  13. Understanding the Protocol for Metadata Harvesting of the Open Archives Initiative.

    ERIC Educational Resources Information Center

    Breeding, Marshall

    2002-01-01

    Explains the Open Archives Initiative (OAI) Protocol for Metadata Harvesting and its impact on digital libraries and information retrieval by transferring metadata from one server to another in a network of information systems. Highlights include data providers; service providers; value-added services; Dublin Core metadata; data transfer;…

  14. The Design of Geo-Spatial Metadata Architecture for Digital Boundary

    NASA Astrophysics Data System (ADS)

    Zhao, J.-X.; Zhang, J.; Cao, Y.-B.

    2013-11-01

    This paper analyzes the significance of geospatial metadata technology in the "Digital Boundary" project. In the study of boundary data types and characteristics, the architecture framework of geospatial metadata is designed. It lays foundation for establishing detailed content of all kinds of metadata as the next step.

  15. Biomass production in Florida

    SciTech Connect

    Smith, W.H.; Dowd, M.L.

    1981-08-01

    Florida posseses climatic, land, and water resources favorable for abundant biomass production. Therefore, a statewide program has been initiated to determine adapted species for the available array of production sites. Plant resources under investigation include woody, aquatic, grasses, hydrocarbon, and root crop species. The goal is to produce a continuous stream of biomass for the various biofuel conversion options. Preliminary yields from energy cropping experiments range from about 10 to nearly 90 metric tons per hectare per year, depending on the crop and the production systems employed. (Refs. 15).

  16. Changes in Anthocyanin Production during Domestication of Citrus1[OPEN

    PubMed Central

    Garcia-Lor, Andrés; Licciardello, Concetta; Las Casas, Giuseppina; Ramadugu, Chandrika; Krueger, Robert; Fanciullino, Anne-Laure; Froelicher, Yann

    2017-01-01

    Mandarin (Citrus reticulata), citron (Citrus medica), and pummelo (Citrus maxima) are important species of the genus Citrus and parents of the interspecific hybrids that constitute the most familiar commercial varieties of Citrus: sweet orange, sour orange, clementine, lemon, lime, and grapefruit. Citron produces anthocyanins in its young leaves and flowers, as do species in genera closely related to Citrus, but mandarins do not, and pummelo varieties that produce anthocyanins have not been reported. We investigated the activity of the Ruby gene, which encodes a MYB transcription factor controlling anthocyanin biosynthesis, in different accessions of a range of Citrus species and in domesticated cultivars. A white mutant of lemon lacks functional alleles of Ruby, demonstrating that Ruby plays an essential role in anthocyanin production in Citrus. Almost all the natural variation in pigmentation by anthocyanins in Citrus species can be explained by differences in activity of the Ruby gene, caused by point mutations and deletions and insertions of transposable elements. Comparison of the allelic constitution of Ruby in different species and cultivars also helps to clarify many of the taxonomic relationships in different species of Citrus, confirms the derivation of commercial varieties during domestication, elucidates the relationships within the subgenus Papeda, and allows a new genetic classification of mandarins. PMID:28196843

  17. Florida Library Directory with Statistics, 1996.

    ERIC Educational Resources Information Center

    Florida Dept. of State, Tallahassee. Div. of Library and Information Services.

    This publication is a directory of Florida libraries and related organizations, and contains statistical data for Florida public libraries for fiscal year 1994-95. The report lists members of the State Library Council, Florida State Advisory Council on Libraries, Florida Library Network Council, Staff Directory, State Library of Florida…

  18. State Education Finance and Governance Profile: Florida

    ERIC Educational Resources Information Center

    Wright, Rebecca

    2010-01-01

    This article presents the state education finance and governance profile of Florida. The state of Florida has 67 regular school districts as well as additional special districts comprised of developmental research schools and other schools that serve special populations. In 1973, the Florida Legislature adopted the Florida Education Finance…

  19. New Pseudomonas spp. Are Pathogenic to Citrus

    PubMed Central

    Beiki, Farid; Busquets, Antonio; Gomila, Margarita; Rahimian, Heshmat; Lalucat, Jorge; García-Valdés, Elena

    2016-01-01

    Five putative novel Pseudomonas species shown to be pathogenic to citrus have been characterized in a screening of 126 Pseudomonas strains isolated from diseased citrus leaves and stems in northern Iran. The 126 strains were studied using a polyphasic approach that included phenotypic characterizations and phylogenetic multilocus sequence analysis. The pathogenicity of these strains against 3 cultivars of citrus is demonstrated in greenhouse and field studies. The strains were initially grouped phenotypically and by their partial rpoD gene sequences into 11 coherent groups in the Pseudomonas fluorescens phylogenetic lineage. Fifty-three strains that are representatives of the 11 groups were selected and analyzed by partial sequencing of their 16S rRNA and gyrB genes. The individual and concatenated partial sequences of the three genes were used to construct the corresponding phylogenetic trees. The majority of the strains were identified at the species level: P. lurida (5 strains), P. monteilii (2 strains), P. moraviensis (1 strain), P. orientalis (16 strains), P. simiae (7 strains), P. syringae (46 strains, distributed phylogenetically in at least 5 pathovars), and P. viridiflava (2 strains). This is the first report of pathogenicity on citrus of P. orientalis, P. simiae, P. lurida, P. moraviensis and P. monteilii strains. The remaining 47 strains that could not be identified at the species level are considered representatives of at least 5 putative novel Pseudomonas species that are not yet described. PMID:26919540

  20. Asian citrus psyllid genome (Diaphorina citri, Hemiptera)

    Technology Transfer Automated Retrieval System (TEKTRAN)

    The Psyllid genome is a scientific breakthrough in that it opens the psyllid genetic blueprint to investigations of all questions ranging from taxonomic origins to the understanding of developmental biology, to the acquisition and transmission of pathogens. The Asian citrus psyllid, Diaphorina citri...