Control analysis of lipid biosynthesis in tissue cultures from oil crops shows that flux control is shared between fatty acid synthesis and lipid assembly.

PubMed Central

Ramli, Umi S; Baker, Darren S; Quant, Patti A; Harwood, John L

2002-01-01

Top-Down (Metabolic) Control Analysis (TDCA) was used to examine, quantitatively, lipid biosynthesis in tissue cultures from two commercially important oil crops, olive (Olea europaea L.) and oil palm (Elaeis guineensis Jacq.). A conceptually simplified system was defined comprising two blocks of reactions: fatty acid synthesis (Block A) and lipid assembly (Block B), which produced and consumed, respectively, a common and unique system intermediate, cytosolic acyl-CoA. We manipulated the steady-state levels of the system intermediate by adding exogenous oleic acid and, using two independent assays, measured the effect of the addition on the system fluxes (J(A) and J(B)). These were the rate of incorporation of radioactivity: (i) through Block A from [1-(14)C]acetate into fatty acids and (ii) via Block B from [U-(14)C]glycerol into complex lipids respectively. The data showed that fatty acid formation (Block A) exerted higher control than lipid assembly (Block B) in both tissues with the following group flux control coefficients (C):(i) Oil palm: *C(J(TL))(BlkA)=0.64+/-0.05 and *C(J(TL))(BlkB)=0.36+/-0.05(ii) Olive: *C(J(TL))(BlkA)=0.57+/-0.10 and *C(J(TL))(BlkB)=0.43+/-0.10where *C indicates the group flux control coefficient over the lipid biosynthesis flux (J(TL)) and the subscripts BlkA and BlkB refer to defined blocks of the system, Block A and Block B. Nevertheless, because both parts of the lipid biosynthetic pathway exert significant flux control, we suggest strongly that manipulation of single enzyme steps will not affect product yield appreciably. The present study represents the first use of TDCA to examine the overall lipid biosynthetic pathway in any tissue, and its findings are of immediate academic and economic relevance to the yield and nutritional quality of oil crops. PMID:12023882

Empirical predictive models of daily relativistic electron flux at geostationary orbit: Multiple regression analysis

DOE PAGES

Simms, Laura E.; Engebretson, Mark J.; Pilipenko, Viacheslav; ...

2016-04-07

The daily maximum relativistic electron flux at geostationary orbit can be predicted well with a set of daily averaged predictor variables including previous day's flux, seed electron flux, solar wind velocity and number density, AE index, IMF Bz, Dst, and ULF and VLF wave power. As predictor variables are intercorrelated, we used multiple regression analyses to determine which are the most predictive of flux when other variables are controlled. Empirical models produced from regressions of flux on measured predictors from 1 day previous were reasonably effective at predicting novel observations. Adding previous flux to the parameter set improves the predictionmore » of the peak of the increases but delays its anticipation of an event. Previous day's solar wind number density and velocity, AE index, and ULF wave activity are the most significant explanatory variables; however, the AE index, measuring substorm processes, shows a negative correlation with flux when other parameters are controlled. This may be due to the triggering of electromagnetic ion cyclotron waves by substorms that cause electron precipitation. VLF waves show lower, but significant, influence. The combined effect of ULF and VLF waves shows a synergistic interaction, where each increases the influence of the other on flux enhancement. Correlations between observations and predictions for this 1 day lag model ranged from 0.71 to 0.89 (average: 0.78). Furthermore, a path analysis of correlations between predictors suggests that solar wind and IMF parameters affect flux through intermediate processes such as ring current ( Dst), AE, and wave activity.« less

Empirical predictive models of daily relativistic electron flux at geostationary orbit: Multiple regression analysis

DOE Office of Scientific and Technical Information (OSTI.GOV)

Simms, Laura E.; Engebretson, Mark J.; Pilipenko, Viacheslav

The daily maximum relativistic electron flux at geostationary orbit can be predicted well with a set of daily averaged predictor variables including previous day's flux, seed electron flux, solar wind velocity and number density, AE index, IMF Bz, Dst, and ULF and VLF wave power. As predictor variables are intercorrelated, we used multiple regression analyses to determine which are the most predictive of flux when other variables are controlled. Empirical models produced from regressions of flux on measured predictors from 1 day previous were reasonably effective at predicting novel observations. Adding previous flux to the parameter set improves the predictionmore » of the peak of the increases but delays its anticipation of an event. Previous day's solar wind number density and velocity, AE index, and ULF wave activity are the most significant explanatory variables; however, the AE index, measuring substorm processes, shows a negative correlation with flux when other parameters are controlled. This may be due to the triggering of electromagnetic ion cyclotron waves by substorms that cause electron precipitation. VLF waves show lower, but significant, influence. The combined effect of ULF and VLF waves shows a synergistic interaction, where each increases the influence of the other on flux enhancement. Correlations between observations and predictions for this 1 day lag model ranged from 0.71 to 0.89 (average: 0.78). Furthermore, a path analysis of correlations between predictors suggests that solar wind and IMF parameters affect flux through intermediate processes such as ring current ( Dst), AE, and wave activity.« less

Transcriptional analysis of product-concentration driven changes in cellular programs of recombinant Clostridium acetobutylicumstrains.

PubMed

Tummala, Seshu B; Junne, Stefan G; Paredes, Carlos J; Papoutsakis, Eleftherios T

2003-12-30

Antisense RNA (asRNA) downregulation alters protein expression without changing the regulation of gene expression. Downregulation of primary metabolic enzymes possibly combined with overexpression of other metabolic enzymes may result in profound changes in product formation, and this may alter the large-scale transcriptional program of the cells. DNA-array based large-scale transcriptional analysis has the potential to elucidate factors that control cellular fluxes even in the absence of proteome data. These themes are explored in the study of large-scale transcriptional analysis programs and the in vivo primary-metabolism fluxes of several related recombinant C. acetobutylicum strains: C. acetobutylicum ATCC 824(pSOS95del) (plasmid control; produces high levels of butanol snd acetone), 824(pCTFB1AS) (expresses antisense RNA against CoA transferase (ctfb1-asRNA); produces very low levels of butanol and acetone), and 824(pAADB1) (expresses ctfb1-asRNA and the alcohol-aldehyde dahydrogenase gene (aad); produce high alcohol and low acetone levels). DNA-array based transcriptional analysis revealed that the large changes in product concentrations (snd notably butanol concentration) due to ctfb1-asRNA expression alone and in combination with aad overexpression resulted in dramatic changes of the cellular transcriptome. Cluster analysis and gene expression patterns of established and putative operons involved in stress response, motility, sporulation, and fatty-acid biosynthesis indicate that these simple genetic changes dramatically alter the cellular programs of C. acetobutylicum. Comparison of gene expression and flux analysis data may point to possible flux-controling steps and suggest unknown regulatory mechanisms. Copyright 2003; Wiley Periodicals, Inc.

Surface-air mercury fluxes across Western North America: A synthesis of spatial trends and controlling variables

USGS Publications Warehouse

Eckley, Chris S.; Tate, Michael T.; Lin, Che-Jen; Gustin, Mae S.; Dent, Stephen; Eagles-Smith, Collin A.; Lutz, Michelle A; Wickland, Kimberly; Wang, Bronwen; Gray, John E.; Edwards, Grant; Krabbenhoft, David P.; Smith, David

2016-01-01

Mercury (Hg) emission and deposition can occur to and from soils, and are an important component of the global atmospheric Hg budget. This paper focuses on synthesizing existing surface-air Hg flux data collected throughout the Western North American region and is part of a series of geographically focused Hg synthesis projects. A database of existing Hg flux data collected using the dynamic flux chamber (DFC) approach from almost a thousand locations was created for the Western North America region. Statistical analysis was performed on the data to identify the important variables controlling Hg fluxes and to allow spatiotemporal scaling. The results indicated that most of the variability in soil-air Hg fluxes could be explained by variations in soil-Hg concentrations, solar radiation, and soil moisture. This analysis also identified that variations in DFC methodological approaches were detectable among the field studies, with the chamber material and sampling flushing flow rate influencing the magnitude of calculated emissions. The spatiotemporal scaling of soil-air Hg fluxes identified that the largest emissions occurred from irrigated agricultural landscapes in California. Vegetation was shown to have a large impact on surface-air Hg fluxes due to both a reduction in solar radiation reaching the soil as well as from direct uptake of Hg in foliage. Despite high soil Hg emissions from some forested and other heavily vegetated regions, the net ecosystem flux (soil flux + vegetation uptake) was low. Conversely, sparsely vegetated regions showed larger net ecosystem emissions, which were similar in magnitude to atmospheric Hg deposition (except for the Mediterranean California region where soil emissions were higher). The net ecosystem flux results highlight the important role of landscape characteristics in effecting the balance between Hg sequestration and (re-)emission to the atmosphere.

Surface-Air Mercury Fluxes Across Western North America: A Synthesis of Spatial Trends and Controlling Variables.

NASA Astrophysics Data System (ADS)

Eckley, C.; Tate, M.; Lin, C. J.; Gustin, M. S.; Dent, S.; Eagles-Smith, C.; Lutz, M.; Wickland, K.; Wang, B.; Gray, J.; Edwards, G. C.; Krabbenhoft, D. P.; Smith, D. B.

2016-12-01

Mercury (Hg) emission and deposition can occur to and from soils and are an important component of the global atmospheric Hg budget. This presentation focuses on synthesizing existing surface-air Hg flux data collected throughout the Western North American region and is part of a series of geographically focused Hg synthesis projects. A database of existing Hg flux data collected using the dynamic flux chamber (DFC) approach from almost a thousand locations was created for the Western North America region. Statistical analysis was performed on the data to identify the important variables controlling Hg fluxes and to allow spatiotemporal scaling. The results indicated that most of the variability in soil-air Hg fluxes could be explained by variations in soil-Hg concentrations, solar radiation, and soil moisture. This analysis also identified that variations in DFC methodological approaches were detectable among the field studies, with the chamber material and sampling flushing flow rate influencing the magnitude of calculated emissions. The spatiotemporal scaling of soil-air Hg fluxes identified that the largest emissions occurred from irrigated agricultural landscapes in California. Vegetation was shown to have a large impact on surface-air Hg fluxes due to both a reduction in solar radiation reaching the soil as well as from direct uptake of Hg in foliage. Despite high soil Hg emissions from some forested and other heavily vegetated regions, the net ecosystem flux (soil flux + vegetation uptake) was low. Conversely, sparsely vegetated regions showed larger net ecosystem emissions, which were similar in magnitude to atmospheric Hg deposition (except for the Mediterranean California region where soil emissions were higher). The net ecosystem flux results highlight the important role of landscape characteristics in effecting the balance between Hg sequestration and (re-)emission to the atmosphere.

A new lattice hydrodynamic model based on control method considering the flux change rate and delay feedback signal

NASA Astrophysics Data System (ADS)

Qin, Shunda; Ge, Hongxia; Cheng, Rongjun

2018-02-01

In this paper, a new lattice hydrodynamic model is proposed by taking delay feedback and flux change rate effect into account in a single lane. The linear stability condition of the new model is derived by control theory. By using the nonlinear analysis method, the mKDV equation near the critical point is deduced to describe the traffic congestion. Numerical simulations are carried out to demonstrate the advantage of the new model in suppressing traffic jam with the consideration of flux change rate effect in delay feedback model.

Near-zero methane emission from an abandoned boreal peatland pasture based on eddy covariance measurements

PubMed Central

Wang, Mei; Luan, Junwei; Lafleur, Peter; Chen, Huai; Zhu, Xinbiao

2017-01-01

Although estimates of the annual methane (CH4) flux from agriculturally managed peatlands exist, knowledge of controls over the variation of CH4 at different time-scales is limited due to the lack of high temporal-resolution data. Here we present CH4 fluxes measured from May 2014 to April 2016 using the eddy covariance technique at an abandoned peatland pasture in western Newfoundland, Canada. The goals of the study were to identify the controls on the seasonal variations in CH4 flux and to quantify the annual CH4 flux. The seasonal variation in daily CH4 flux was not strong in the two study years, however a few periods of pronounced emissions occurred in the late growing season. The daily average CH4 flux was small relative to other studies, ranging from -4.1 to 9.9 nmol m-2 s-1 in 2014–15 and from -7.1 to 12.1 nmol m-2 s-1 in 2015–16. Stepwise multiple regression was used to investigate controls on CH4 flux and this analysis found shifting controls on CH4 flux at different periods of the growing season. During the early growing season CH4 flux was closely related to carbon dioxide fixation rates, suggesting substrate availability was the main control. The peak growing season CH4 flux was principally controlled by the CH4 oxidation in 2014, where the CH4 flux decreased and increased with soil temperature at 50 cm and soil water content at 10 cm, but a contrasting temperature-CH4 relation was found in 2015. The late growing season CH4 flux was found to be regulated by the variation in water table level and air temperature in 2014. The annual CH4 emission was near zero in both study years (0.36 ± 0.30 g CH4 m-2 yr-1 in 2014–15 and 0.13 ± 0.38 g CH4 m-2 yr-1 in 2015–16), but fell within the range of CH4 emissions reported for agriculturally managed peatlands elsewhere. PMID:29252998

Near-zero methane emission from an abandoned boreal peatland pasture based on eddy covariance measurements.

PubMed

Wang, Mei; Wu, Jianghua; Luan, Junwei; Lafleur, Peter; Chen, Huai; Zhu, Xinbiao

2017-01-01

Although estimates of the annual methane (CH4) flux from agriculturally managed peatlands exist, knowledge of controls over the variation of CH4 at different time-scales is limited due to the lack of high temporal-resolution data. Here we present CH4 fluxes measured from May 2014 to April 2016 using the eddy covariance technique at an abandoned peatland pasture in western Newfoundland, Canada. The goals of the study were to identify the controls on the seasonal variations in CH4 flux and to quantify the annual CH4 flux. The seasonal variation in daily CH4 flux was not strong in the two study years, however a few periods of pronounced emissions occurred in the late growing season. The daily average CH4 flux was small relative to other studies, ranging from -4.1 to 9.9 nmol m-2 s-1 in 2014-15 and from -7.1 to 12.1 nmol m-2 s-1 in 2015-16. Stepwise multiple regression was used to investigate controls on CH4 flux and this analysis found shifting controls on CH4 flux at different periods of the growing season. During the early growing season CH4 flux was closely related to carbon dioxide fixation rates, suggesting substrate availability was the main control. The peak growing season CH4 flux was principally controlled by the CH4 oxidation in 2014, where the CH4 flux decreased and increased with soil temperature at 50 cm and soil water content at 10 cm, but a contrasting temperature-CH4 relation was found in 2015. The late growing season CH4 flux was found to be regulated by the variation in water table level and air temperature in 2014. The annual CH4 emission was near zero in both study years (0.36 ± 0.30 g CH4 m-2 yr-1 in 2014-15 and 0.13 ± 0.38 g CH4 m-2 yr-1 in 2015-16), but fell within the range of CH4 emissions reported for agriculturally managed peatlands elsewhere.

Analysis of Solar Receiver Flux Distributions for US/Russian Solar Dynamic System Demonstration on the MIR Space Station

NASA Technical Reports Server (NTRS)

1995-01-01

Analyses have been performed at the NASA Lewis Research Center's Power Systems Project Office to support the design and development of the joint U.S./Russian Solar Dynamic Flight Demonstration Project. The optical analysis of the concentrator and solar flux predictions on target receiver surfaces have an important influence on receiver design and control of the Brayton engine.

DOE Office of Scientific and Technical Information (OSTI.GOV)

Edgue, E.

The point kinetics approach is a classical useful method for a reactor transient analysis. It is helpful to known, however, when a more elaborate transient analysis, involving the space-dependence change of the flux through a given transient, should be considered. In this paper, the authors present a rather elegant and quick method to check the need for a space-dependent flux analysis through a control rod transient in a given nuclear reactor. The method is applied to a series of rod ejection experiments in the TRIGA MARK-II reactor of Istanbul Technical University (ITU).

The role of soil weathering and hydrology in regulating chemical fluxes from catchments (Invited)

NASA Astrophysics Data System (ADS)

Maher, K.; Chamberlain, C. P.

2010-12-01

Catchment-scale chemical fluxes have been linked to a number of different parameters that describe the conditions at the Earth’s surface, including runoff, temperature, rock type, vegetation, and the rate of tectonic uplift. However, many of the relationships relating chemical denudation to surface processes and conditions, while based on established theoretical principles, are largely empirical and derived solely from modern observations. Thus, an enhanced mechanistic basis for linking global solute fluxes to both surface processes and climate may improve our confidence in extrapolating modern solute fluxes to past and future conditions. One approach is to link observations from detailed soil-based studies with catchment-scale properties. For example, a number of recent studies of chemical weathering at the soil-profile scale have reinforced the importance of hydrologic processes in controlling chemical weathering rates. An analysis of data from granitic soils shows that weathering rates decrease with increasing fluid residence times and decreasing flow rates—over moderate fluid residence times, from 5 days to 10 years, transport-controlled weathering explains the orders of magnitude variation in weathering rates to a better extent than soil age. However, the importance of transport-controlled weathering is difficult to discern at the catchment scale because of the range of flow rates and fluid residence times captured by a single discharge or solute flux measurement. To assess the importance of transport-controlled weathering on catchment scale chemical fluxes, we present a model that links the chemical flux to the extent of reaction between the soil waters and the solids, or the fluid residence time. Different approaches for describing the distribution of fluid residence times within a catchment are then compared with the observed Si fluxes for a limited number of catchments. This model predicts high solute fluxes in regions with high run-off, relief, and long flow paths suggesting that the particular hydrologic setting of a landscape will be the underlying control on the chemical fluxes. As such, we reinterpret the large chemical fluxes that are observed in active mountain belts, like the Himalaya, to be primarily controlled by the long reactive flow paths created by the steep terrain coupled with high amounts of precipitation.

[Effects of warming and precipitation exclusion on soil N2O fluxes in subtropical forests.

PubMed

Tang, Cai di; Zhang, Zheng; Cai, Xiao Zhen; Guo, Jian Fen; Yang, Yu Sheng

2017-10-01

In order to explore how soil warming and precipitation exclusion influence soil N2O fluxes, we used related functional genes as markers, and four treatments were set up, i.e. , control (CT), soil warming (W, 5 ℃ above the ambient temperature of the control), 50% precipitation reduction (P), soil warming plus 50% precipitation reduction (WP). The results showed that precipitation exclusion reduced soil ammonium nitrogen concentration significantly. Soil warming decreased soil N2O flux and soil denitrification potential significantly. Soil microbial biomass nitrogen (MBN) in warming treatment (W) and precipitation exclusion treatment (P) was significantly lower than that in the control. The amoA gene abundance of AOA was negatively correlated with MBN and ammonium nitrogen contents, but neither soil nitrification potential nor soil N2O flux was correlated with the amoA gene abundance of AOA. Path analysis showed that the denitrification potential affected soil N2O flux directly, while microbial biomass phosphorus (MBP) and warming affected soil N2O flux indirectly through their direct effects on denitrification potential. Temperature might be the main driver of N2O flux in subtropical forest soils. Global warming would reduce N2O emissions from subtropical forest soils.

Integrated metabolic flux and omics analysis of Synechocystis sp. PCC 6803 under mixotrophic and photoheterotrophic conditions.

PubMed

Nakajima, Tsubasa; Kajihata, Shuichi; Yoshikawa, Katsunori; Matsuda, Fumio; Furusawa, Chikara; Hirasawa, Takashi; Shimizu, Hiroshi

2014-09-01

Cyanobacteria have flexible metabolic capability that enables them to adapt to various environments. To investigate their underlying metabolic regulation mechanisms, we performed an integrated analysis of metabolic flux using transcriptomic and metabolomic data of a cyanobacterium Synechocystis sp. PCC 6803, under mixotrophic and photoheterotrophic conditions. The integrated analysis indicated drastic metabolic flux changes, with much smaller changes in gene expression levels and metabolite concentrations between the conditions, suggesting that the flux change was not caused mainly by the expression levels of the corresponding genes. Under photoheterotrophic conditions, created by the addition of the photosynthesis inhibitor atrazine in mixotrophic conditions, the result of metabolic flux analysis indicated the significant repression of carbon fixation and the activation of the oxidative pentose phosphate pathway (PPP). Moreover, we observed gluconeogenic activity of upstream of glycolysis, which enhanced the flux of the oxidative PPP to compensate for NADPH depletion due to the inhibition of the light reaction of photosynthesis. 'Omics' data suggested that these changes were probably caused by the repression of the gap1 gene, which functions as a control valve in the metabolic network. Since metabolic flux is the outcome of a complicated interplay of cellular components, integrating metabolic flux with other 'omics' layers can identify metabolic changes and narrow down these regulatory mechanisms more effectively. © The Author 2014. Published by Oxford University Press on behalf of Japanese Society of Plant Physiologists. All rights reserved. For permissions, please email: journals.permissions@oup.com.

Active Power and Flux Control of a Self-Excited Induction Generator for a Variable-Speed Wind Turbine Generation

DOE Office of Scientific and Technical Information (OSTI.GOV)

Na, Woonki; Muljadi, Eduard; Leighty, Bill

A Self-Excited Induction Generation (SEIG) for a variable speed wind turbine generation(VS-WG) is normally considered to be a good candidate for implementation in stand-alone applications such as battery charging, hydrogenation, water pumping, water purification, water desalination, and etc. In this study, we have examined a study on active power and flux control strategies for a SEIG for a variable speed wind turbine generation. The control analysis for the proposed system is carried out by using PSCAD software. In the process, we can optimize the control design of the system, thereby enhancing and expediting the control design procedure for this application.more » With this study, this control design for a SEIG for VS-WG can become the industry standard for analysis and development in terms of SEIG.« less

Data Quality Assurance and Control for AmeriFlux Network at CDIAC, ORNL

NASA Astrophysics Data System (ADS)

Shem, W.; Boden, T.; Krassovski, M.; Yang, B.

2014-12-01

The Carbon Dioxide Information Analysis Center (CDIAC) at the Oak Ridge National Laboratory (ORNL) serves as the long-term data repository for the AmeriFlux network. Datasets currently available include hourly or half-hourly meteorological and flux observations, biological measurement records, and synthesis data products. Currently there is a lack of standardized nomenclature and specifically designed procedures for data quality assurance/control in processing and handling micrometeorological and ecological data at individual flux sites. CDIAC's has bridged this gap by providing efficient and accurate procedures for data quality control and standardization of the results for easier assimilation by the models used in climate science. In this presentation we highlight the procedures we have put in place to scrutinize continuous flux and meteorological data within Ameriflux network. We itemize some basic data quality issues that we have observed over the past years and include some examples of typical data quality issues. Such issues, e.g., incorrect time-stamping, poor calibration or maintenance of instruments, missing or incomplete metadata and others that are commonly over-looked by PI's, invariably impact the time-series observations.

The importance of wind-flux feedbacks during the November CINDY-DYNAMO MJO event

NASA Astrophysics Data System (ADS)

Riley Dellaripa, Emily; Maloney, Eric; van den Heever, Susan

2015-04-01

High-resolution, large-domain cloud resolving model (CRM) simulations probing the importance of wind-flux feedbacks to Madden-Julian Oscillation (MJO) convection are performed for the November 2011 CINDY-DYNAMO MJO event. The work is motivated by observational analysis from RAMA buoys in the Indian Ocean and TRMM precipitation retrievals that show a positive correlation between MJO precipitation and wind-induced surface fluxes, especially latent heat fluxes, during and beyond the CINDY-DYNAMO time period. Simulations are done using Colorado State University's Regional Atmospheric Modeling System (RAMS). The domain setup is oceanic and spans 1000 km x 1000 km with 1.5 km horizontal resolution and 65 stretched vertical levels centered on the location of Gan Island - one of the major CINDY-DYNAMO observation points. The model is initialized with ECMWF reanalysis and Aqua MODIS sea surface temperatures. Nudging from ECMWF reanalysis is applied at the domain periphery to encourage realistic evolution of MJO convection. The control experiment is run for the entire month of November so both suppressed and active, as well as, transitional phases of the MJO are modeled. In the control experiment, wind-induced surface fluxes are activated through the surface bulk aerodynamic formula and allowed to evolve organically. Sensitivity experiments are done by restarting the control run one week into the simulation and controlling the wind-induced flux feedbacks. In one sensitivity experiment, wind-induced surface flux feedbacks are completely denied, while in another experiment the winds are kept constant at the control simulations mean surface wind speed. The evolution of convection, especially on the mesoscale, is compared between the control and sensitivity simulations.

Dynamic modeling of lactic acid fermentation metabolism with Lactococcus lactis.

PubMed

Oh, Euhlim; Lu, Mingshou; Park, Changhun; Park, Changhun; Oh, Han Bin; Lee, Sang Yup; Lee, Jinwon

2011-02-01

A dynamic model of lactic acid fermentation using Lactococcus lactis was constructed, and a metabolic flux analysis (MFA) and metabolic control analysis (MCA) were performed to reveal an intensive metabolic understanding of lactic acid bacteria (LAB). The parameter estimation was conducted with COPASI software to construct a more accurate metabolic model. The experimental data used in the parameter estimation were obtained from an LC-MS/ MS analysis and time-course simulation study. The MFA results were a reasonable explanation of the experimental data. Through the parameter estimation, the metabolic system of lactic acid bacteria can be thoroughly understood through comparisons with the original parameters. The coefficients derived from the MCA indicated that the reaction rate of L-lactate dehydrogenase was activated by fructose 1,6-bisphosphate and pyruvate, and pyruvate appeared to be a stronger activator of L-lactate dehydrogenase than fructose 1,6-bisphosphate. Additionally, pyruvate acted as an inhibitor to pyruvate kinase and the phosphotransferase system. Glucose 6-phosphate and phosphoenolpyruvate showed activation effects on pyruvate kinase. Hexose transporter was the strongest effector on the flux through L-lactate dehydrogenase. The concentration control coefficient (CCC) showed similar results to the flux control coefficient (FCC).

Flux qubit interaction with rapid single-flux quantum logic circuits: Control and readout

NASA Astrophysics Data System (ADS)

Klenov, N. V.; Kuznetsov, A. V.; Soloviev, I. I.; Bakurskiy, S. V.; Denisenko, M. V.; Satanin, A. M.

2017-07-01

We present the results of an analytical study and numerical simulation of the dynamics of a superconducting three-Josephson-junction (3JJ) flux qubit magnetically coupled with rapid single-flux quantum (RSFQ) logic circuit, which demonstrate the fundamental possibility of implementing the simplest logic operations at picosecond times, as well as rapid non-destructive readout. It is shown that when solving optimization problems, the qubit dynamics can be conveniently interpreted as a precession of the magnetic moment vector around the direction of the magnetic field. In this case, the role of magnetic field components is played by combinations of the Hamiltonian matrix elements, and the role of the magnetic moment is played by the Bloch vector. Features of the 3JJ qubit model are discussed during the analysis of how the qubit is affected by exposure to a short control pulse, as are the similarities between the Bloch and Landau-Lifshitz-Gilbert equations. An analysis of solutions to the Bloch equations made it possible to develop recommendations for the use of readout RSFQ circuits in implementing an optimal interface between the classical and quantum parts of the computer system, as well as to justify the use of single-quantum logic in order to control superconducting quantum circuits on a chip.

Metabolic and transcriptional regulatory mechanisms underlying the anoxic adaptation of rice coleoptile

PubMed Central

Lakshmanan, Meiyappan; Mohanty, Bijayalaxmi; Lim, Sun-Hyung; Ha, Sun-Hwa; Lee, Dong-Yup

2014-01-01

The ability of rice to germinate under anoxia by extending the coleoptile is a highly unusual characteristic and a key feature underpinning the ability of rice seeds to establish in such a stressful environment. The process has been a focal point for research for many years. However, the molecular mechanisms underlying the anoxic growth of the coleoptile still remain largely unknown. To unravel the key regulatory mechanisms of rice germination under anoxic stress, we combined in silico modelling with gene expression data analysis. Our initial modelling analysis via random flux sampling revealed numerous changes in rice primary metabolism in the absence of oxygen. In particular, several reactions associated with sucrose metabolism and fermentation showed a significant increase in flux levels, whereas reaction fluxes across oxidative phosphorylation, the tricarboxylic acid cycle and the pentose phosphate pathway were down-regulated. The subsequent comparative analysis of the differences in calculated fluxes with previously published gene expression data under air and anoxia identified at least 37 reactions from rice central metabolism that are transcriptionally regulated. Additionally, cis-regulatory content analyses of these transcriptionally controlled enzymes indicate a regulatory role for transcription factors such as MYB, bZIP, ERF and ZnF in transcriptional control of genes that are up-regulated during rice germination and coleoptile elongation under anoxia. PMID:24894389

Deregulation of Feedback Inhibition of Phosphoenolpyruvate Carboxylase for Improved Lysine Production in Corynebacterium glutamicum

PubMed Central

Chen, Zhen; Bommareddy, Rajesh Reddy; Frank, Doinita; Rappert, Sugima

2014-01-01

Allosteric regulation of phosphoenolpyruvate carboxylase (PEPC) controls the metabolic flux distribution of anaplerotic pathways. In this study, the feedback inhibition of Corynebacterium glutamicum PEPC was rationally deregulated, and its effect on metabolic flux redistribution was evaluated. Based on rational protein design, six PEPC mutants were designed, and all of them showed significantly reduced sensitivity toward aspartate and malate inhibition. Introducing one of the point mutations (N917G) into the ppc gene, encoding PEPC of the lysine-producing strain C. glutamicum LC298, resulted in ∼37% improved lysine production. In vitro enzyme assays and 13C-based metabolic flux analysis showed ca. 20 and 30% increases in the PEPC activity and corresponding flux, respectively, in the mutant strain. Higher demand for NADPH in the mutant strain increased the flux toward pentose phosphate pathway, which increased the supply of NADPH for enhanced lysine production. The present study highlights the importance of allosteric regulation on the flux control of central metabolism. The strategy described here can also be implemented to improve other oxaloacetate-derived products. PMID:24334667

Deregulation of feedback inhibition of phosphoenolpyruvate carboxylase for improved lysine production in Corynebacterium glutamicum.

PubMed

Chen, Zhen; Bommareddy, Rajesh Reddy; Frank, Doinita; Rappert, Sugima; Zeng, An-Ping

2014-02-01

Allosteric regulation of phosphoenolpyruvate carboxylase (PEPC) controls the metabolic flux distribution of anaplerotic pathways. In this study, the feedback inhibition of Corynebacterium glutamicum PEPC was rationally deregulated, and its effect on metabolic flux redistribution was evaluated. Based on rational protein design, six PEPC mutants were designed, and all of them showed significantly reduced sensitivity toward aspartate and malate inhibition. Introducing one of the point mutations (N917G) into the ppc gene, encoding PEPC of the lysine-producing strain C. glutamicum LC298, resulted in ∼37% improved lysine production. In vitro enzyme assays and (13)C-based metabolic flux analysis showed ca. 20 and 30% increases in the PEPC activity and corresponding flux, respectively, in the mutant strain. Higher demand for NADPH in the mutant strain increased the flux toward pentose phosphate pathway, which increased the supply of NADPH for enhanced lysine production. The present study highlights the importance of allosteric regulation on the flux control of central metabolism. The strategy described here can also be implemented to improve other oxaloacetate-derived products.

Trends and Controls of inter-annual Variability in the Carbon Budget of Terrestrial Ecosystems

NASA Astrophysics Data System (ADS)

Cescatti, A.; Marcolla, B.

2014-12-01

The climate sensitivity of the terrestrial carbon budget will substantially affect the sign and strength of the land-climate feedbacks and the future climate trajectories. Current trends in the inter-annual variability of terrestrial carbon fluxes (IAV) may contribute to clarify the relative role of physical and biological controls of ecosystem responses to climate change. For this purpose we investigated how recent climate variability has impacted the carbon fluxes at long-term FLUXNET sites. Using a novel method, the IAV has been factored out in climate induced variability (physical control), variability due to changes in ecosystem functioning (biological control) and the interaction of the two terms. The relative control of the main climatic drivers (temperature, water availability) on the physical and biological sources of IAV has been investigated using both site level fluxes and global gridded products generated from the up-scaling of flux data. Results of this analysis highlight the fundamental role of precipitation trends on the pattern of IAV in the last 30 years. Our findings on the spatial/temporal trends of IAV have been finally confirmed using the signal derived from the global network of atmospheric CO2 concentrations measurements.

Adaptation of an urban land surface model to a tropical suburban area: Offline evaluation, sensitivity analysis, and optimization of TEB/ISBA (SURFEX)

NASA Astrophysics Data System (ADS)

Harshan, Suraj

The main objective of the present thesis is the improvement of the TEB/ISBA (SURFEX) urban land surface model (ULSM) through comprehensive evaluation, sensitivity analysis, and optimization experiments using energy balance and radiative and air temperature data observed during 11 months at a tropical sub-urban site in Singapore. Overall the performance of the model is satisfactory, with a small underestimation of net radiation and an overestimation of sensible heat flux. Weaknesses in predicting the latent heat flux are apparent with smaller model values during daytime and the model also significantly underpredicts both the daytime peak and nighttime storage heat. Surface temperatures of all facets are generally overpredicted. Significant variation exists in the model behaviour between dry and wet seasons. The vegetation parametrization used in the model is inadequate to represent the moisture dynamics, producing unrealistically low latent heat fluxes during a particularly dry period. The comprehensive evaluation of the USLM shows the need for accurate estimation of input parameter values for present site. Since obtaining many of these parameters through empirical methods is not feasible, the present study employed a two step approach aimed at providing information about the most sensitive parameters and an optimized parameter set from model calibration. Two well established sensitivity analysis methods (global: Sobol and local: Morris) and a state-of-the-art multiobjective evolutionary algorithm (Borg) were employed for sensitivity analysis and parameter estimation. Experiments were carried out for three different weather periods. The analysis indicates that roof related parameters are the most important ones in controlling the behaviour of the sensible heat flux and net radiation flux, with roof and road albedo as the most influential parameters. Soil moisture initialization parameters are important in controlling the latent heat flux. The built (town) fraction has a significant influence on all fluxes considered. Comparison between the Sobol and Morris methods shows similar sensitivities, indicating the robustness of the present analysis and that the Morris method can be employed as a computationally cheaper alternative of Sobol's method. Optimization as well as the sensitivity experiments for the three periods (dry, wet and mixed), show a noticeable difference in parameter sensitivity and parameter convergence, indicating inadequacies in model formulation. Existence of a significant proportion of less sensitive parameters might be indicating an over-parametrized model. Borg MOEA showed great promise in optimizing the input parameters set. The optimized model modified using the site specific values for thermal roughness length parametrization shows an improvement in the performances of outgoing longwave radiation flux, overall surface temperature, heat storage flux and sensible heat flux.

Zircons reveal magma fluxes in the Earth's crust.

PubMed

Caricchi, Luca; Simpson, Guy; Schaltegger, Urs

2014-07-24

Magma fluxes regulate the planetary thermal budget, the growth of continents and the frequency and magnitude of volcanic eruptions, and play a part in the genesis and size of magmatic ore deposits. However, because a large fraction of the magma produced on the Earth does not erupt at the surface, determinations of magma fluxes are rare and this compromises our ability to establish a link between global heat transfer and large-scale geological processes. Here we show that age distributions of zircons, a mineral often present in crustal magmatic rocks, in combination with thermal modelling, provide an accurate means of retrieving magma fluxes. The characteristics of zircon age populations vary significantly and systematically as a function of the flux and total volume of magma accumulated in the Earth's crust. Our approach produces results that are consistent with independent determinations of magma fluxes and volumes of magmatic systems. Analysis of existing age population data sets using our method suggests that porphyry-type deposits, plutons and large eruptions each require magma input over different timescales at different characteristic average fluxes. We anticipate that more extensive and complete magma flux data sets will serve to clarify the control that the global heat flux exerts on the frequency of geological events such as volcanic eruptions, and to determine the main factors controlling the distribution of resources on our planet.

Analysis of factors controlling sediment phosphorus flux potential of wetlands in Hulun Buir grassland by principal component and path analysis method.

PubMed

He, Jing; Su, Derong; Lv, Shihai; Diao, Zhaoyan; Ye, Shengxing; Zheng, Zhirong

2017-11-08

Phosphorus (P) flux potential can predict the trend of phosphorus release from wetland sediments to water and provide scientific parameters for further monitoring and management for phosphorus flux from wetland sediments to overlying water. Many studies have focused on factors affecting sediment P flux potential in sediment-water interface, but rarely on the relationship among these factors. In the present study, experiment on sediment P flux potential in sediment-water interface was conducted in six wetlands in Hulun Buir grassland, China and the relationships among sediment P flux potential in sediment-water interface, sediment physical properties, and sediment chemical characteristics were examined. Principal component analysis and path analysis were used to discuss these data in correlation coefficient, direct, and indirect effects on sediment P flux potential in sediment-water interface. Results indicated that the major factors affecting sediment P flux potential in sediment-water interface were amount of organophosphate-degradation bacterium in sediment, Ca-P content, and total phosphorus concentrations. The factors of direct influence sediment P flux potential were sediment Ca-P content, Olsen-P content, SOC content, and sediment Al-P content. The indirect influence sediment P flux potential in sediment-water interface was sediment Olsen-P content, sediment SOC content, sediment Ca-P content, and sediment Al-P content. And the standard multiple regression describing the relationship between sediment P flux potential in sediment-water interface and its major effect factors was Y = 5.849 - 1.025X 1  - 1.995X 2  + 0.188X 3  - 0.282X 4 (r = 0.9298, p < 0.01, n = 96), where Y is sediment P flux potential in sediment-water interface, X 1 is sediment Ca-P content, X 2 is sediment Olsen-P content, X 3 is sediment SOC content, and X 4 is sediment Al-P content. Therefore, future research will focus on these sediment properties to analyze the interrelation among sediment properties factors, main vegetable factors, and environment factors which influence the sediment P flux potential in sediment-water interface.

Use of Principal Components Analysis to Explain Controls on Nutrient Fluxes to the Chesapeake Bay

NASA Astrophysics Data System (ADS)

Rice, K. C.; Mills, A. L.

2017-12-01

The Chesapeake Bay watershed, on the east coast of the United States, encompasses about 166,000-square kilometers (km2) of diverse land use, which includes a mixture of forested, agricultural, and developed land. The watershed is now managed under a Total Daily Maximum Load (TMDL), which requires implementation of management actions by 2025 that are sufficient to reduce nitrogen, phosphorus, and suspended-sediment fluxes to the Chesapeake Bay and restore the bay's water quality. We analyzed nutrient and sediment data along with land-use and climatic variables in nine sub watersheds to better understand the drivers of flux within the watershed and to provide relevant management implications. The nine sub watersheds range in area from 300 to 30,000 km2, and the analysis period was 1985-2014. The 31 variables specific to each sub watershed were highly statistically significantly correlated, so Principal Components Analysis was used to reduce the dimensionality of the dataset. The analysis revealed that about 80% of the variability in the whole dataset can be explained by discharge, flux, and concentration of nutrients and sediment. The first two principal components (PCs) explained about 68% of the total variance. PC1 loaded strongly on discharge and flux, and PC2 loaded on concentration. The PC scores of both PC1 and PC2 varied by season. Subsequent analysis of PC1 scores versus PC2 scores, broken out by sub watershed, revealed management implications. Some of the largest sub watersheds are largely driven by discharge, and consequently large fluxes. In contrast, some of the smaller sub watersheds are more variable in nutrient concentrations than discharge and flux. Our results suggest that, given no change in discharge, a reduction in nutrient flux to the streams in the smaller watersheds could result in a proportionately larger decrease in fluxes of nutrients down the river to the bay, than in the larger watersheds.

Directed branch growth in aligned nanowire arrays.

PubMed

Beaudry, Allan L; LaForge, Joshua M; Tucker, Ryan T; Sorge, Jason B; Adamski, Nicholas L; Li, Peng; Taschuk, Michael T; Brett, Michael J

2014-01-01

Branch growth is directed along two, three, or four in-plane directions in vertically aligned nanowire arrays using vapor-liquid-solid glancing angle deposition (VLS-GLAD) flux engineering. In this work, a dynamically controlled collimated vapor flux guides branch placement during the self-catalyzed epitaxial growth of branched indium tin oxide nanowire arrays. The flux is positioned to grow branches on select nanowire facets, enabling fabrication of aligned nanotree arrays with L-, T-, or X-branching. In addition, a flux motion algorithm is designed to selectively elongate branches along one in-plane axis. Nanotrees are found to be aligned across large areas by X-ray diffraction pole figure analysis and through branch length and orientation measurements collected over 140 μm(2) from scanning electron microscopy images for each array. The pathway to guided assembly of nanowire architectures with controlled interconnectivity in three-dimensions using VLS-GLAD is discussed.

Current superimposition variable flux reluctance motor with 8 salient poles

NASA Astrophysics Data System (ADS)

Takahara, Kazuaki; Hirata, Katsuhiro; Niguchi, Noboru; Kohara, Akira

2017-12-01

We propose a current superimposition variable flux reluctance motor for a traction motor of electric vehicles and hybrid electric vehicles, which consists of 10 salient poles in the rotor and 12 slots in the stator. However, iron losses of this motor in high rotation speed ranges is large because the number of salient poles is large. In this paper, we propose a current superimposition variable flux reluctance motor that consists of 8 salient poles and 12 slots. The characteristics of the 10-pole-12-slot and 8-pole-12-slot current superimposition variable flux reluctance motors are compared using finite element analysis under vector control.

The Effect of Breaking Waves on CO_2 Air-Sea Fluxes in the Coastal Zone

NASA Astrophysics Data System (ADS)

Gutiérrez-Loza, Lucía; Ocampo-Torres, Francisco J.; García-Nava, Héctor

2018-03-01

The influence of wave-associated parameters controlling turbulent CO_2 fluxes through the air-sea interface is investigated in a coastal region. A full year of high-quality data of direct estimates of air-sea CO_2 fluxes based on eddy-covariance measurements is presented. The study area located in Todos Santos Bay, Baja California, Mexico, is a net sink of CO_2 with a mean flux of -1.3 μmol m^{-2}s^{-1} (-41.6 mol m^{-2}yr^{-1} ). The results of a quantile-regression analysis computed between the CO_2 flux and, (1) wind speed, (2) significant wave height, (3) wave steepness, and (4) water temperature, suggest that the significant wave height is the most correlated parameter with the magnitude of the flux but the behaviour of the relation varies along the probability distribution function, with the slopes of the regression lines presenting both positive and negative values. These results imply that the presence of surface waves in coastal areas is the key factor that promotes the increase of the flux from and into the ocean. Further analysis suggests that the local characteristics of the aqueous and atmospheric layers might determine the direction of the flux.

Study of Various Slanted Air-Gap Structures of Interior Permanent Magnet Synchronous Motor with Brushless Field Excitation

DOE Office of Scientific and Technical Information (OSTI.GOV)

Tolbert, Leon M; Lee, Seong T

2010-01-01

This paper shows how to maximize the effect of the slanted air-gap structure of an interior permanent magnet synchronous motor with brushless field excitation (BFE) for application in a hybrid electric vehicle. The BFE structure offers high torque density at low speed and weakened flux at high speed. The unique slanted air-gap is intended to increase the output torque of the machine as well as to maximize the ratio of the back-emf of a machine that is controllable by BFE. This irregularly shaped air-gap makes a flux barrier along the d-axis flux path and decreases the d-axis inductance; as amore » result, the reluctance torque of the machine is much higher than a uniform air-gap machine, and so is the output torque. Also, the machine achieves a higher ratio of the magnitude of controllable back-emf. The determination of the slanted shape was performed by using magnetic equivalent circuit analysis and finite element analysis (FEA).« less

Analysis of solar receiver flux distributions for US/Russian solar dynamic system demonstration on the MIR Space Station

NASA Technical Reports Server (NTRS)

Kerslake, Thomas W.; Fincannon, James

1995-01-01

The United States and Russia have agreed to jointly develop a solar dynamic (SD) system for flight demonstration on the Russian MIR space station starting in late 1997. Two important components of this SD system are the solar concentrator and heat receiver provided by Russia and the U.S., respectively. This paper describes optical analysis of the concentrator and solar flux predictions on target receiver surfaces. The optical analysis is performed using the code CIRCE2. These analyses account for finite sun size with limb darkening, concentrator surface slope and position errors, concentrator petal thermal deformation, gaps between petals, and the shading effect of the receiver support struts. The receiver spatial flux distributions are then combined with concentrator shadowing predictions. Geometric shadowing patterns are traced from the concentrator to the target receiver surfaces. These patterns vary with time depending on the chosen MIR flight attitude and orbital mechanics of the MIR spacecraft. The resulting predictions provide spatial and temporal receiver flux distributions for any specified mission profile. The impact these flux distributions have on receiver design and control of the Brayton engine are discussed.

(13)C-metabolic flux analysis in S-adenosyl-L-methionine production by Saccharomyces cerevisiae.

PubMed

Hayakawa, Kenshi; Kajihata, Shuichi; Matsuda, Fumio; Shimizu, Hiroshi

2015-11-01

S-Adenosyl-L-methionine (SAM) is a major biological methyl group donor, and is used as a nutritional supplement and prescription drug. Yeast is used for the industrial production of SAM owing to its high intracellular SAM concentrations. To determine the regulation mechanisms responsible for such high SAM production, (13)C-metabolic flux analysis ((13)C-MFA) was conducted to compare the flux distributions in the central metabolism between Kyokai no. 6 (high SAM-producing) and S288C (control) strains. (13)C-MFA showed that the levels of tricarboxylic acid (TCA) cycle flux in SAM-overproducing strain were considerably increased compared to those in the S228C strain. Analysis of ATP balance also showed that a larger amount of excess ATP was produced in the Kyokai 6 strain because of increased oxidative phosphorylation. These results suggest that high SAM production in Kyokai 6 strains could be attributed to enhanced ATP regeneration with high TCA cycle fluxes and respiration activity. Thus, maintaining high respiration efficiency during cultivation is important for improving SAM production. Copyright © 2015 The Society for Biotechnology, Japan. Published by Elsevier B.V. All rights reserved.

Eutrophication effects on greenhouse gas fluxes from shallow-lake mesocosms override those of climate warming.

PubMed

Davidson, Thomas A; Audet, Joachim; Svenning, Jens-Christian; Lauridsen, Torben L; Søndergaard, Martin; Landkildehus, Frank; Larsen, Søren E; Jeppesen, Erik

2015-12-01

Fresh waters make a disproportionately large contribution to greenhouse gas (GHG) emissions, with shallow lakes being particular hot spots. Given their global prevalence, how GHG fluxes from shallow lakes are altered by climate change may have profound implications for the global carbon cycle. Empirical evidence for the temperature dependence of the processes controlling GHG production in natural systems is largely based on the correlation between seasonal temperature variation and seasonal change in GHG fluxes. However, ecosystem-level GHG fluxes could be influenced by factors, which while varying seasonally with temperature are actually either indirectly related (e.g. primary producer biomass) or largely unrelated to temperature, for instance nutrient loading. Here, we present results from the longest running shallow-lake mesocosm experiment which demonstrate that nutrient concentrations override temperature as a control of both the total and individual GHG flux. Furthermore, testing for temperature treatment effects at low and high nutrient levels separately showed only one, rather weak, positive effect of temperature (CH4 flux at high nutrients). In contrast, at low nutrients, the CO2 efflux was lower in the elevated temperature treatments, with no significant effect on CH4 or N2 O fluxes. Further analysis identified possible indirect effects of temperature treatment. For example, at low nutrient levels, increased macrophyte abundance was associated with significantly reduced fluxes of both CH4 and CO2 for both total annual flux and monthly observation data. As macrophyte abundance was positively related to temperature treatment, this suggests the possibility of indirect temperature effects, via macrophyte abundance, on CH4 and CO2 flux. These findings indicate that fluxes of GHGs from shallow lakes may be controlled more by factors indirectly related to temperature, in this case nutrient concentration and the abundance of primary producers. Thus, at ecosystem scale, response to climate change may not follow predictions based on the temperature dependence of metabolic processes. © 2015 John Wiley & Sons Ltd.

A method for accounting for maintenance costs in flux balance analysis improves the prediction of plant cell metabolic phenotypes under stress conditions.

PubMed

Cheung, C Y Maurice; Williams, Thomas C R; Poolman, Mark G; Fell, David A; Ratcliffe, R George; Sweetlove, Lee J

2013-09-01

Flux balance models of metabolism generally utilize synthesis of biomass as the main determinant of intracellular fluxes. However, the biomass constraint alone is not sufficient to predict realistic fluxes in central heterotrophic metabolism of plant cells because of the major demand on the energy budget due to transport costs and cell maintenance. This major limitation can be addressed by incorporating transport steps into the metabolic model and by implementing a procedure that uses Pareto optimality analysis to explore the trade-off between ATP and NADPH production for maintenance. This leads to a method for predicting cell maintenance costs on the basis of the measured flux ratio between the oxidative steps of the oxidative pentose phosphate pathway and glycolysis. We show that accounting for transport and maintenance costs substantially improves the accuracy of fluxes predicted from a flux balance model of heterotrophic Arabidopsis cells in culture, irrespective of the objective function used in the analysis. Moreover, when the new method was applied to cells under control, elevated temperature and hyper-osmotic conditions, only elevated temperature led to a substantial increase in cell maintenance costs. It is concluded that the hyper-osmotic conditions tested did not impose a metabolic stress, in as much as the metabolic network is not forced to devote more resources to cell maintenance. © 2013 The Authors The Plant Journal © 2013 John Wiley & Sons Ltd.

A multi-model ensemble view of winter heat flux dynamics and the dipole mode in the Mediterranean Sea

NASA Astrophysics Data System (ADS)

Liguori, Giovanni; Di Lorenzo, Emanuele; Cabos, William

2017-02-01

Changes in surface heat fluxes affect several climate processes controlling the Mediterranean climate. These include the winter formation of deep waters, which is the primary driver of the Mediterranean Sea overturning circulation. Previous studies that characterize the spatial and temporal variability of surface heat flux anomalies over the basin reveal the existence of two statistically dominant patterns of variability: a monopole of uniform sign and an east-west dipole of opposite signs. In this work, we use the 12 regional climate model ensemble from the EU-FP6 ENSEMBLES project to diagnose the large-scale atmospheric processes that control the variability of heat fluxes over the Mediterranean Sea from interannual to decadal timescales (here defined as timescales > 6 year). Our findings suggest that while the monopole structure captures variability in the winter-to-winter domain-average net heat flux, the dipole pattern tracks changes in the Mediterranean climate that are connected to the East Atlantic/Western Russia (EA/WR) atmospheric teleconnection pattern. Furthermore, while the monopole exhibits significant differences in the spatial structure across the multi-model ensemble, the dipole pattern is very robust and more clearly identifiable in the anomaly maps of individual years. A heat budget analysis of the dipole pattern reveals that changes in winds associated with the EA/WR pattern exert dominant control through both a direct effect on the latent heat flux (i.e., wind speed) and an indirect effect through specific humidity (e.g., wind advection). A simple reconstruction of the heat flux variability over the deep-water formation regions of the Gulf of Lion and the Aegean Sea reveals that the combination of the monopole and dipole time series explains over 90 % of the heat flux variance in these regions. Given the important role that surface heat flux anomalies play in deep-water formation and the regional climate, improving our knowledge on the dynamics controlling the leading modes of heat flux variability may enhance our predictability of the climate of the Mediterranean area.

Quantitative Multilevel Analysis of Central Metabolism in Developing Oilseeds of Oilseed Rape During In Vitro Culture

DOE Office of Scientific and Technical Information (OSTI.GOV)

Schwender, Jorg; Hebbelmann, Inga; Heinzel, Nicholas

Seeds provide the basis for many food, feed, and fuel products. Continued increases in seed yield, composition, and quality require an improved understanding of how the developing seed converts carbon and nitrogen supplies into storage. Current knowledge of this process is often based on the premise that transcriptional regulation directly translates via enzyme concentration into flux. In an attempt to highlight metabolic control, we explore genotypic differences in carbon partitioning for in vitro cultured developing embryos of oilseed rape (Brassica napus). We determined biomass composition as well as 79 net fluxes, the levels of 77 metabolites, and 26 enzyme activitiesmore » with specific focus on central metabolism in nine selected germplasm accessions. We observed a tradeoff between the biomass component fractions of lipid and starch. With increasing lipid content over the spectrum of genotypes, plastidic fatty acid synthesis and glycolytic flux increased concomitantly, while glycolytic intermediates decreased. The lipid/starch tradeoff was not reflected at the proteome level, pointing to the significance of (posttranslational) metabolic control. Enzyme activity/flux and metabolite/flux correlations suggest that plastidic pyruvate kinase exerts flux control and that the lipid/starch tradeoff is most likely mediated by allosteric feedback regulation of phosphofructokinase and ADP-glucose pyrophosphorylase. Also, quantitative data were used to calculate in vivo mass action ratios, reaction equilibria, and metabolite turnover times. Compounds like cyclic 3',5'-AMP and sucrose-6-phosphate were identified to potentially be involved in so far unknown mechanisms of metabolic control. This study provides a rich source of quantitative data for those studying central metabolism..« less

Quantitative Multilevel Analysis of Central Metabolism in Developing Oilseeds of Oilseed Rape during in Vitro Culture1[OPEN

PubMed Central

Schwender, Jörg; Hebbelmann, Inga; Heinzel, Nicolas; Hildebrandt, Tatjana; Rogers, Alistair; Klapperstück, Matthias; Schreiber, Falk; Borisjuk, Ljudmilla; Rolletschek, Hardy

2015-01-01

Seeds provide the basis for many food, feed, and fuel products. Continued increases in seed yield, composition, and quality require an improved understanding of how the developing seed converts carbon and nitrogen supplies into storage. Current knowledge of this process is often based on the premise that transcriptional regulation directly translates via enzyme concentration into flux. In an attempt to highlight metabolic control, we explore genotypic differences in carbon partitioning for in vitro cultured developing embryos of oilseed rape (Brassica napus). We determined biomass composition as well as 79 net fluxes, the levels of 77 metabolites, and 26 enzyme activities with specific focus on central metabolism in nine selected germplasm accessions. Overall, we observed a tradeoff between the biomass component fractions of lipid and starch. With increasing lipid content over the spectrum of genotypes, plastidic fatty acid synthesis and glycolytic flux increased concomitantly, while glycolytic intermediates decreased. The lipid/starch tradeoff was not reflected at the proteome level, pointing to the significance of (posttranslational) metabolic control. Enzyme activity/flux and metabolite/flux correlations suggest that plastidic pyruvate kinase exerts flux control and that the lipid/starch tradeoff is most likely mediated by allosteric feedback regulation of phosphofructokinase and ADP-glucose pyrophosphorylase. Quantitative data were also used to calculate in vivo mass action ratios, reaction equilibria, and metabolite turnover times. Compounds like cyclic 3′,5′-AMP and sucrose-6-phosphate were identified to potentially be involved in so far unknown mechanisms of metabolic control. This study provides a rich source of quantitative data for those studying central metabolism. PMID:25944824

OzFlux data: network integration from collection to curation

NASA Astrophysics Data System (ADS)

Isaac, Peter; Cleverly, James; McHugh, Ian; van Gorsel, Eva; Ewenz, Cacilia; Beringer, Jason

2017-06-01

Measurement of the exchange of energy and mass between the surface and the atmospheric boundary-layer by the eddy covariance technique has undergone great change in the last 2 decades. Early studies of these exchanges were confined to brief field campaigns in carefully controlled conditions followed by months of data analysis. Current practice is to run tower-based eddy covariance systems continuously over several years due to the need for continuous monitoring as part of a global effort to develop local-, regional-, continental- and global-scale budgets of carbon, water and energy. Efficient methods of processing the increased quantities of data are needed to maximise the time available for analysis and interpretation. Standardised methods are needed to remove differences in data processing as possible contributors to observed spatial variability. Furthermore, public availability of these data sets assists with undertaking global research efforts. The OzFlux data path has been developed (i) to provide a standard set of quality control and post-processing tools across the network, thereby facilitating inter-site integration and spatial comparisons; (ii) to increase the time available to researchers for analysis and interpretation by reducing the time spent collecting and processing data; (iii) to propagate both data and metadata to the final product; and (iv) to facilitate the use of the OzFlux data by adopting a standard file format and making the data available from web-based portals. Discovery of the OzFlux data set is facilitated through incorporation in FLUXNET data syntheses and the publication of collection metadata via the RIF-CS format. This paper serves two purposes. The first is to describe the data sets, along with their quality control and post-processing, for the other papers of this Special Issue. The second is to provide an example of one solution to the data collection and curation challenges that are encountered by similar flux tower networks worldwide.

Area-averaged evapotranspiration over a heterogeneous land surface: aggregation of multi-point EC flux measurements with a high-resolution land-cover map and footprint analysis

NASA Astrophysics Data System (ADS)

Xu, Feinan; Wang, Weizhen; Wang, Jiemin; Xu, Ziwei; Qi, Yuan; Wu, Yueru

2017-08-01

The determination of area-averaged evapotranspiration (ET) at the satellite pixel scale/model grid scale over a heterogeneous land surface plays a significant role in developing and improving the parameterization schemes of the remote sensing based ET estimation models and general hydro-meteorological models. The Heihe Watershed Allied Telemetry Experimental Research (HiWATER) flux matrix provided a unique opportunity to build an aggregation scheme for area-averaged fluxes. On the basis of the HiWATER flux matrix dataset and high-resolution land-cover map, this study focused on estimating the area-averaged ET over a heterogeneous landscape with footprint analysis and multivariate regression. The procedure is as follows. Firstly, quality control and uncertainty estimation for the data of the flux matrix, including 17 eddy-covariance (EC) sites and four groups of large-aperture scintillometers (LASs), were carefully done. Secondly, the representativeness of each EC site was quantitatively evaluated; footprint analysis was also performed for each LAS path. Thirdly, based on the high-resolution land-cover map derived from aircraft remote sensing, a flux aggregation method was established combining footprint analysis and multiple-linear regression. Then, the area-averaged sensible heat fluxes obtained from the EC flux matrix were validated by the LAS measurements. Finally, the area-averaged ET of the kernel experimental area of HiWATER was estimated. Compared with the formerly used and rather simple approaches, such as the arithmetic average and area-weighted methods, the present scheme is not only with a much better database, but also has a solid grounding in physics and mathematics in the integration of area-averaged fluxes over a heterogeneous surface. Results from this study, both instantaneous and daily ET at the satellite pixel scale, can be used for the validation of relevant remote sensing models and land surface process models. Furthermore, this work will be extended to the water balance study of the whole Heihe River basin.

Elucidating dynamic metabolic physiology through network integration of quantitative time-course metabolomics

DOE PAGES

Bordbar, Aarash; Yurkovich, James T.; Paglia, Giuseppe; ...

2017-04-07

In this study, the increasing availability of metabolomics data necessitates novel methods for deeper data analysis and interpretation. We present a flux balance analysis method that allows for the computation of dynamic intracellular metabolic changes at the cellular scale through integration of time-course absolute quantitative metabolomics. This approach, termed “unsteady-state flux balance analysis” (uFBA), is applied to four cellular systems: three dynamic and one steady-state as a negative control. uFBA and FBA predictions are contrasted, and uFBA is found to be more accurate in predicting dynamic metabolic flux states for red blood cells, platelets, and Saccharomyces cerevisiae. Notably, only uFBAmore » predicts that stored red blood cells metabolize TCA intermediates to regenerate important cofactors, such as ATP, NADH, and NADPH. These pathway usage predictions were subsequently validated through 13C isotopic labeling and metabolic flux analysis in stored red blood cells. Utilizing time-course metabolomics data, uFBA provides an accurate method to predict metabolic physiology at the cellular scale for dynamic systems.« less

Elucidating dynamic metabolic physiology through network integration of quantitative time-course metabolomics

DOE Office of Scientific and Technical Information (OSTI.GOV)

Bordbar, Aarash; Yurkovich, James T.; Paglia, Giuseppe

In this study, the increasing availability of metabolomics data necessitates novel methods for deeper data analysis and interpretation. We present a flux balance analysis method that allows for the computation of dynamic intracellular metabolic changes at the cellular scale through integration of time-course absolute quantitative metabolomics. This approach, termed “unsteady-state flux balance analysis” (uFBA), is applied to four cellular systems: three dynamic and one steady-state as a negative control. uFBA and FBA predictions are contrasted, and uFBA is found to be more accurate in predicting dynamic metabolic flux states for red blood cells, platelets, and Saccharomyces cerevisiae. Notably, only uFBAmore » predicts that stored red blood cells metabolize TCA intermediates to regenerate important cofactors, such as ATP, NADH, and NADPH. These pathway usage predictions were subsequently validated through 13C isotopic labeling and metabolic flux analysis in stored red blood cells. Utilizing time-course metabolomics data, uFBA provides an accurate method to predict metabolic physiology at the cellular scale for dynamic systems.« less

Landscape-level controls on dissolved carbon flux from diverse catchments of the circumboreal

USGS Publications Warehouse

Tank, Suzanne; Frey, Karen E.; Striegl, Robert G.; Raymond, Peter A.; Holmes, R. Max; McClelland, James W.; Peterson, Bruce J.

2012-01-01

While much of the dissolved organic carbon (DOC) within rivers is destined for mineralization to CO2, a substantial fraction of riverine bicarbonate (HCO3-) flux represents a CO2 sink, as a result of weathering processes that sequester CO2 as HCO3-. We explored landscape-level controls on DOC and HCO3- flux in subcatchments of the boreal, with a specific focus on the effect of permafrost on riverine dissolved C flux. To do this, we undertook a multivariate analysis that partitioned the variance attributable to known, key regulators of dissolved C flux (runoff, lithology, and vegetation) prior to examining the effect of permafrost, using riverine biogeochemistry data from a suite of subcatchments drawn from the Mackenzie, Yukon, East, and West Siberian regions of the circumboreal. Across the diverse catchments that we study, controls on HCO3- flux were near-universal: runoff and an increased carbonate rock contribution to weathering (assessed as riverwater Ca:Na) increased HCO3- yields, while increasing permafrost extent was associated with decreases in HCO3-. In contrast, permafrost had contrasting and region-specific effects on DOC yield, even after the variation caused by other key drivers of its flux had been accounted for. We used ionic ratios and SO4 yields to calculate the potential range of CO2 sequestered via weathering across these boreal subcatchments, and show that decreasing permafrost extent is associated with increases in weathering-mediated CO2 fixation across broad spatial scales, an effect that could counterbalance some of the organic C mineralization that is predicted with declining permafrost.

Ecosystem approach to a global nitrous oxide budget

NASA Technical Reports Server (NTRS)

Matson, P. A.; Vitousek, P. M.

1990-01-01

An approach using relationships among soil fertility, nitrogen cycling, and nitrous oxide production is presented in order to estimate nitrous oxide flux from humid tropical forests. The effects of human disturbance are also investigated. It is noted that recent estimates suggest that 6-10 million ha. of tropical forest are cleared permanently each year. The results of measurements of nitrous oxide flux from cleared and burned sites in Costa Rica and Brazil, in conjunction with satellite-based classifications of ecosystem types, are used to calculate average hourly fluxes for a given region. In the NASA intensive site near Manaus, Brazil, it was found that although pasture areas cover only 11 percent of the region they account for 40 percent of the nitrous oxide flux. This analysis of the fluxes of trace gases through consideration of the gradients of factors that control both fluxes and ecosystem properties and processes will prove useful for extrapolating fluxes and for calculating budgets of nitrous oxide, methane, nonmethane hydrocarbons, and carbon dioxide.

Zircon Age Distributions Provide Magma Fluxes in the Earth's Crust

NASA Astrophysics Data System (ADS)

Caricchi, L.; Simpson, G.; Schaltegger, U.

2014-12-01

Magma fluxes control the growth of continents, the frequency and magnitude of volcanic eruptions and are important for the genesis of magmatic ore deposits. A significant part of the magma produced in the Earth's mantle solidifies at depth and this limits our capability of determining magma fluxes, which, in turn, compromises our ability to establish a link between global heat transfer and large-scale geological processes. Using thermal modelling in combination with high precision zircon dating we show that populations of zircon ages provide an accurate mean to retrieve magma fluxes. The characteristics of zircon age populations vary significantly and systematically as function of the flux and total volume of magma accumulated at depth. This new approach provides results that are identical to independent determinations of magma fluxes and volumes of magmatic systems. The analysis of existing age population datasets by our method highlights that porphyry-type deposits, plutons and large eruptions each require magma input over different timescales at characteristic average fluxes.

A CSMP commutation model for design study of a brushless dc motor power conditioner for a cruise missile fin control actuator

NASA Astrophysics Data System (ADS)

MacMillan, P. N.

1985-06-01

Recent improvements in rare earth magnets have made it possible to construct strong, lightweight, high horsepower dc motors. This has occasioned a reassessment of electromechanical actuators as alternatives to comparable pneumatic and hydraulic systems for use as flight control actuators for tactical missiles. A dynamic equivalent circuit model for the analysis of a small four pole brushless dc motor fed by a transistorized power conditioner utilizing high speed switching power transistors as final elements is presented. The influence of electronic commutation on instantaneous dynamic motor performance is particularly demonstrated and good correlation between computer simulation and typical experimentally obtained performance data is achieved. The model is implemented in CSMP language and features more accurate air gap flux representation over previous work. Hall effect sensor rotor position feedback is simulated. Both constant and variable air gap flux is modeled and the variable flux model treats the flux as a fundamental and one harmonic.

Gimbal Control Algorithms for the Global Precipitation Measurement Core Observatory

NASA Technical Reports Server (NTRS)

Welter, Gary L.; Liu, Kuo Chia; Blaurock, Carl

2012-01-01

There are two gimbaled systems on the Global Precipitation Measurement Core Observatory: two single-degree-of-freedom solar arrays (SAs) and one two-degree-of-freedom high gain antenna (HGA). The guidance, navigation, and control analysis team was presented with the following challenges regarding SA orientation control during periods of normal mission science: (1) maximize solar flux on the SAs during orbit day, subject to battery charging limits, (2) minimize atmospheric drag during orbit night to reduce frequency of orbit maintenance thruster usage, (3) minimize atmospheric drag during orbits for which solar flux is nearly independent of SA orientation, and (4) keep array-induced spacecraft attitude disturbances within allocated tolerances. The team was presented with the following challenges regarding HGA control during mission science periods: (1) while tracking a ground-selected Tracking Data and Relay Satellite (TDRS), keep HGA control error below about 4', (2) keep array-induced spacecraft attitude disturbances small, and (3) minimize transition time between TDRSs subject to constraints imposed by item 2. This paper describes the control algorithms developed to achieve these goals and certain analysis done as part of that work.

Analysis of JKT01 Neutron Flux Detector Measurements In RSG-GAS Reactor Using LabVIEW

NASA Astrophysics Data System (ADS)

Rokhmadi; Nur Rachman, Agus; Sujarwono; Taryo, Taswanda; Sunaryo, Geni Rina

2018-02-01

The RSG-GAS Reactor, one of the Indonesia research reactors and located in Serpong, is owned by the National Nuclear Energy Agency (BATAN). The RSG-GAS reactor has operated since 1987 and some instrumentation and control systems are considered to be degraded and ageing. It is therefore, necessary to evaluate the safety of all instrumentation and controls and one of the component systems to be evaluated is the performance of JKT01 neutron flux detector. Neutron Flux Detector JKT01 basically detects neutron fluxes in the reactor core and converts it into electrical signals. The electrical signal is then forwarded to the amplifier (Amplifier) to become the input of the reactor protection system. One output of it is transferred to the Main Control Room (RKU) showing on the analog meter as an indicator used by the reactor operator. To simulate all of this matter, a program to simulate the output of the JKT01 Neutron Flux Detector using LabVIEW was developed. The simulated data is estimated using a lot of equations also formulated in LabVIEW. The calculation results are also displayed on the interface using LabVIEW available in the PC. By using this simulation program, it is successful to perform anomaly detection experiments on the JKT01 detector of RSG-GAS Reactor. The simulation results showed that the anomaly JKT01 neutron flux using electrical-current-base are respectively, 1.5×,1.7× and 2.0×.

Amazon River dissolved load: temporal dynamics and annual budget from the Andes to the ocean.

PubMed

Moquet, Jean-Sébastien; Guyot, Jean-Loup; Crave, Alain; Viers, Jérôme; Filizola, Naziano; Martinez, Jean-Michel; Oliveira, Tereza Cristina; Sánchez, Liz Stefanny Hidalgo; Lagane, Christelle; Casimiro, Waldo Sven Lavado; Noriega, Luis; Pombosa, Rodrigo

2016-06-01

The aim of the present study is to estimate the export fluxes of major dissolved species at the scale of the Amazon basin, to identify the main parameters controlling their spatial distribution and to identify the role of discharge variability in the variability of the total dissolved solid (TDS) flux through the hydrological cycle. Data are compiled from the monthly hydrochemistry and daily discharge database of the "Programa Climatologico y Hidrologico de la Cuenca Amazonica de Bolivia" (PHICAB) and the HYBAM observatories from 34 stations distributed over the Amazon basin (for the 1983-1992 and 2000-2012 periods, respectively). This paper consists of a first global observation of the fluxes and temporal dynamics of each geomorphological domain of the Amazon basin. Based on mean interannual monthly flux calculations, we estimated that the Amazon basin delivered approximately 272 × 10(6) t year(-1) (263-278) of TDS during the 2003-2012 period, which represents approximately 7 % of the continental inputs to the oceans. This flux is mainly made up by HCO3, Ca and SiO2, reflecting the preferential contributions of carbonate and silicate chemical weathering to the Amazon River Basin. The main tributaries contributing to the TDS flux are the Marañon and Ucayali Rivers (approximately 50 % of the TDS production over 14 % of the Amazon basin area) due to the weathering of carbonates and evaporites drained by their Andean tributaries. An Andes-sedimentary area-shield TDS flux (and specific flux) gradient is observed throughout the basin and is first explained by the TDS concentration contrast between these domains, rather than variability in runoff. This observation highlights that, under tropical context, the weathering flux repartition is primarily controlled by the geomorphological/geological setting and confirms that sedimentary areas are currently active in terms of the production of dissolved load. The log relationships of concentration vs discharge have been characterized over all the studied stations and for all elements. The analysis of the slope of the relationship within the selected contexts reveals that the variability in TDS flux is mainly controlled by the discharge variability throughout the hydrological year. At the outlet of the basin, a clockwise hysteresis is observed for TDS concentration and is mainly controlled by Ca and HCO3 hysteresis, highlighting the need for a sampling strategy with a monthly frequency to accurately determine the TDS fluxes of the basin. The evaporite dissolution flux tends to be constant, whereas dissolved load fluxes released from other sources (silicate weathering, carbonate weathering, biological and/or atmospheric inputs) are mainly driven by variability in discharge. These results suggest that past and further climate variability had or will have a direct impact on the variability of dissolved fluxes in the Amazon. Further studies need to be performed to better understand the processes controlling the dynamics of weathering fluxes and their applicability to present-day concentration-discharge relationships at longer timescales.

Evaluation of deep vadose zone contaminant flux into groundwater: Approach and case study

NASA Astrophysics Data System (ADS)

Oostrom, M.; Truex, M. J.; Last, G. V.; Strickland, C. E.; Tartakovsky, G. D.

2016-06-01

For sites with a contaminant source located in the vadose zone, the nature and extent of groundwater contaminant plumes are a function of the contaminant flux from the vadose zone to groundwater. Especially for thick vadose zones, transport may be relatively slow making it difficult to directly measure contaminant flux. An integrated assessment approach, supported by site characterization and monitoring data, is presented to explain current vadose zone contaminant distributions and to estimate future contaminant flux to groundwater in support of remediation decisions. The U.S. Department of Energy Hanford Site (WA, USA) SX Tank Farm was used as a case study because of a large existing contaminant inventory in its deep vadose zone, the presence of a limited-extent groundwater plume, and the relatively large amount of available data for the site. A predictive quantitative analysis was applied to refine a baseline conceptual model through the completion of a series of targeted simulations. The analysis revealed that site recharge is the most important flux-controlling process for future contaminant flux. Tank leak characteristics and subsurface heterogeneities appear to have a limited effect on long-term contaminant flux into groundwater. The occurrence of the current technetium-99 groundwater plume was explained by taking into account a considerable historical water-line leak adjacent to one of the tanks. The analysis further indicates that the vast majority of technetium-99 is expected to migrate into the groundwater during the next century. The approach provides a template for use in evaluating contaminant flux to groundwater using existing site data and has elements that are relevant to other disposal sites with a thick vadose zone.

Evaluation of deep vadose zone contaminant flux into groundwater: Approach and case study.

PubMed

Oostrom, M; Truex, M J; Last, G V; Strickland, C E; Tartakovsky, G D

2016-06-01

For sites with a contaminant source located in the vadose zone, the nature and extent of groundwater contaminant plumes are a function of the contaminant flux from the vadose zone to groundwater. Especially for thick vadose zones, transport may be relatively slow making it difficult to directly measure contaminant flux. An integrated assessment approach, supported by site characterization and monitoring data, is presented to explain current vadose zone contaminant distributions and to estimate future contaminant flux to groundwater in support of remediation decisions. The U.S. Department of Energy Hanford Site (WA, USA) SX Tank Farm was used as a case study because of a large existing contaminant inventory in its deep vadose zone, the presence of a limited-extent groundwater plume, and the relatively large amount of available data for the site. A predictive quantitative analysis was applied to refine a baseline conceptual model through the completion of a series of targeted simulations. The analysis revealed that site recharge is the most important flux-controlling process for future contaminant flux. Tank leak characteristics and subsurface heterogeneities appear to have a limited effect on long-term contaminant flux into groundwater. The occurrence of the current technetium-99 groundwater plume was explained by taking into account a considerable historical water-line leak adjacent to one of the tanks. The analysis further indicates that the vast majority of technetium-99 is expected to migrate into the groundwater during the next century. The approach provides a template for use in evaluating contaminant flux to groundwater using existing site data and has elements that are relevant to other disposal sites with a thick vadose zone. Copyright © 2016 Elsevier B.V. All rights reserved.

Evaluation of Deep Vadose Zone Contaminant Flux into Groundwater: Approach and Case Study

DOE Office of Scientific and Technical Information (OSTI.GOV)

Oostrom, Martinus; Truex, Michael J.; Last, George V.

For sites with a contaminant source located in the vadose zone, the nature and extent of groundwater contaminant plumes are a function of the contaminant flux from the vadose zone to groundwater. Especially for thick vadose zones, transport may be relatively slow making it difficult to directly measure contaminant flux. An integrated assessment approach, supported by site characterization and monitoring data, is presented to explain current vadose zone contaminant distributions and to estimate future contaminant flux to groundwater in support of remediation decisions. The U.S. Department of Energy Hanford Site (WA, USA) SX Tank Farm was used as a casemore » study because of a large existing contaminant inventory in its deep vadose zone, the presence of a limited-extent groundwater plume, and the relatively large amount of available data for the site. A predictive quantitative analysis was applied to refine a baseline conceptual model through the completion of a series of targeted simulations. The analysis revealed that site recharge is the most important flux-controlling process for future contaminant flux. Tank leak characteristics and subsurface heterogeneities appear to have a limited effect on long-term contaminant flux into groundwater. The occurrence of the current technetium-99 groundwater plume was explained by taking into account a considerable historical water-line leak adjacent to one of the tanks. The analysis further indicates that the vast majority of technetium-99 is expected to migrate into the groundwater during the next century. The approach provides a template for use in evaluating contaminant flux to groundwater using existing site data and has elements that are relevant to other disposal sites with a thick vadose zone.« less

The solids-flux theory--confirmation and extension by using partial differential equations.

PubMed

Diehl, Stefan

2008-12-01

The solids-flux theory has been used for half a century as a tool for estimating concentration and fluxes in the design and operation of secondary settling tanks during stationary conditions. The flux theory means that the conservation of mass is used in one dimension together with the batch-settling flux function according to the Kynch assumption. The flux theory results correspond to stationary solutions of a partial differential equation, a conservation law, with discontinuous coefficients modelling the continuous-sedimentation process in one dimension. The mathematical analysis of such an equation is intricate, partly since it cannot be interpreted in the classical sense. Recent results, however, make it possible to partly confirm and extend the previous flux theory statements, partly draw new conclusions also on the dynamic behaviour and the possibilities and limitations for control. We use here a single example of an ideal settling tank and a given batch-settling flux in a whole series of calculations. The mathematical results are adapted towards the application and many of them are conveniently presented in terms of operating charts.

Thermodynamic Analysis for the Refining Ability of Salt Flux for Aluminum Recycling

PubMed Central

Hiraki, Takehito; Miki, Takahiro; Nakajima, Kenichi; Matsubae, Kazuyo; Nakamura, Shinichiro; Nagasaka, Tetsuya

2014-01-01

The removability of impurities during the aluminum remelting process by oxidation was previously investigated by our research group. In the present work, alternative impurity removal with chlorination has been evaluated by thermodynamic analysis. For 43 different elements, equilibrium distribution ratios among metal, chloride flux and oxide slag phases in the aluminum remelting process were calculated by assuming the binary systems of aluminum and an impurity element. It was found that the removability of impurities isn’t significantly affected by process parameters such as chloride partial pressure, temperature and flux composition. It was shown that Ho, Dy, Li, La, Mg, Gd, Ce, Yb, Ca and Sr can be potentially eliminated into flux by chlorination from the remelted aluminum. Chlorination and oxidation are not effective to remove other impurities from the melting aluminum, due to the limited parameters which can be controlled during the remelting process. It follows that a proper management of aluminum scrap such as sorting based on the composition of the products is important for sustainable aluminum recycling. PMID:28788144

Analysis of Water Vapour Flux Between Alpine Wetlands Underlying the Surface and Atmosphere in the Source Region of the Yellow River

NASA Astrophysics Data System (ADS)

Xie, Y.; Wen, J.; Liu, R.; Wang, X.; JIA, D.

2017-12-01

Wetland underlying surface is sensitive to climate change. Analysis of the degree of coupling between wetlands and the atmosphere and a quantitative assessment of how environmental factors influence latent heat flux have considerable scientific significance. Previous studies, which focused on the forest, grassland and farmland ecosystems, lack research on the alpine wetlands. In addition, research on the environmental control mechanism of latent heat flux is still qualitative and lacks quantitative evaluations and calculations. Using data from the observational tests of the Maduo Observatory of Climate and Environment of the Northwest Institute of Eco-Environment and Resource, CAS, from June 1 to August 31, 2014, this study analysed the time-varying characteristics and causes of the degree of coupling between alpine wetlands underlying surface and the atmosphere and quantitatively calculated the influences of different environmental factors (solar radiation and vapour pressure deficit) on latent heat flux. The results were as follows: Due to the diurnal variations of solar radiation and wind speed, the diurnal variations of the Ω factor present a trend in which the Ω factor are small in the morning and large in the evening. Due to the vegetation growing cycle, the seasonal variations of the Ω factor present a reverse "U" trend . These trends are similar to the diurnal and seasonal variations of the absolute control exercised by solar radiation over the latent heat flux. This conforms to omega theory. The values for average absolute atmospheric factor (surface factor or total ) control exercised by solar radiation and water vapour pressure are 0.20 (0.02 or 0.22 ) and 0.005 (-0.07 or -0.06) W·m-2·Pa-1, respectively.. Generally speaking, solar radiation and water vapour pressure deficit exert opposite forces on the latent heat flux. The average Ω factor is high during the vegetation growing season, with a value of 0.38, and the degree of coupling between the alpine wetland surface and the atmosphere system is low. The actual measurements agree with omega theory. The latent heat flux is mainly influenced by solar radiation. From the above, our study has provided reference information for exploring the influences of environmental factors on the latent heat flux over the alpine wetlands of the Yellow River source region.

Towards an integrated quality control procedure for eddy-covariance data

NASA Astrophysics Data System (ADS)

Vitale, Domenico; Papale, Dario

2017-04-01

The eddy-covariance technique is nowadays the most reliable and direct way, allowing to calculate the main fluxes of Sensible and Latent Heat and of Net Ecosystem Exchange, this last being the result of the difference between the CO2 assimilated by photosynthetic activities and those released to the atmosphere through the ecosystem respiration processes. Despite the improvements in accuracy of measurement instruments and software development, the eddy-covariance technique is not suitable under non-ideal conditions respect to the instruments characteristics and the physical assumption behind the technique mainly related to the well-developed and stationary turbulence conditions. Under these conditions the calculated fluxes are not reliable and need to be flagged and discarded. In order to discover these unavoidable "bad" fluxes and build dataset with the highest quality, several tests applied both on high-frequency (10-20 Hz) raw data and on half-hourly times series have been developed in the past years. Nevertheless, there is an increasing need to develop a standardized quality control procedure suitable not only for the analysis of long-term data, but also for the near-real time data processing. In this paper, we review established quality assessment procedures and present an innovative quality control strategy with the purpose of integrating the existing consolidated procedures with robust and advanced statistical tests more suitable for the analysis of time series data. The performance of the proposed quality control strategy is evaluated both on simulated and EC data distributed by the ICOS research infrastructure. It is concluded that the proposed strategy is able to flag and exclude unrealistic fluxes while being reproducible and retaining the largest possible amount of high quality data.

Evaluation of test equipment for the detection of contamination on electronic circuits

NASA Astrophysics Data System (ADS)

Bergendahl, C. G.; Dunn, B. D.

1984-08-01

The reproducibility, sensitivity and ease of operation of test equipment for the detection of ionizable contaminants on the surface of printed circuit assemblies were assessed. The characteristics of the test equipment are described. Soldering fluxes were chosen as contaminants and were applied in controlled amounts to printed-circuit board assemblies possessing two different component populations. Results show that the relationship between equipment readings varies with flux type. Each kind of test equipment gives a good measure of board cleanliness, although reservations exist concerning the interpretation of such results. A test method for the analysis of total (organic and inorganic) halides in solder fluxes is presented.

Storage flux uncertainty impact on eddy covariance net ecosystem exchange measurements

NASA Astrophysics Data System (ADS)

Nicolini, Giacomo; Aubinet, Marc; Feigenwinter, Christian; Heinesch, Bernard; Lindroth, Anders; Mamadou, Ossénatou; Moderow, Uta; Mölder, Meelis; Montagnani, Leonardo; Rebmann, Corinna; Papale, Dario

2017-04-01

Complying with several assumption and simplifications, most of the carbon budget studies based on eddy covariance (EC) measurements, quantify the net ecosystem exchange (NEE) by summing the flux obtained by EC (Fc) and the storage flux (Sc). Sc is the rate of change of CO2, within the so called control volume below the EC measurement level, given by the difference in the instantaneous profiles of concentration at the beginning and end of the EC averaging period, divided by the averaging period. While cumulating over time led to a nullification of Sc, it can be significant at short time periods. The approaches used to estimate Sc fluxes largely vary, from measurements based only on a single sampling point (usually located at the EC measurement height) to measurements based on several sampling profiles distributed within the control volume. Furthermore, the number of sampling points within each profile vary, according to their height and the ecosystem typology. It follows that measurement accuracy increases with the sampling intensity within the control volume. In this work we use the experimental dataset collected during the ADVEX campaign in which Sc flux has been measured in three similar forest sites by the use of 5 sampling profiles (towers). Our main objective is to quantify the impact of Sc measurement uncertainty on NEE estimates. Results show that different methods may produce substantially different Sc flux estimates, with problematic consequences in case high frequency (half-hourly) data are needed for the analysis. However, the uncertainty on long-term estimates may be tolerate.

Flux control coefficients determined by inhibitor titration: the design and analysis of experiments to minimize errors.

PubMed Central

Small, J R

1993-01-01

This paper is a study into the effects of experimental error on the estimated values of flux control coefficients obtained using specific inhibitors. Two possible techniques for analysing the experimental data are compared: a simple extrapolation method (the so-called graph method) and a non-linear function fitting method. For these techniques, the sources of systematic errors are identified and the effects of systematic and random errors are quantified, using both statistical analysis and numerical computation. It is shown that the graph method is very sensitive to random errors and, under all conditions studied, that the fitting method, even under conditions where the assumptions underlying the fitted function do not hold, outperformed the graph method. Possible ways of designing experiments to minimize the effects of experimental errors are analysed and discussed. PMID:8257434

Growth control of the eukaryote cell: a systems biology study in yeast.

PubMed

Castrillo, Juan I; Zeef, Leo A; Hoyle, David C; Zhang, Nianshu; Hayes, Andrew; Gardner, David Cj; Cornell, Michael J; Petty, June; Hakes, Luke; Wardleworth, Leanne; Rash, Bharat; Brown, Marie; Dunn, Warwick B; Broadhurst, David; O'Donoghue, Kerry; Hester, Svenja S; Dunkley, Tom Pj; Hart, Sarah R; Swainston, Neil; Li, Peter; Gaskell, Simon J; Paton, Norman W; Lilley, Kathryn S; Kell, Douglas B; Oliver, Stephen G

2007-01-01

Cell growth underlies many key cellular and developmental processes, yet a limited number of studies have been carried out on cell-growth regulation. Comprehensive studies at the transcriptional, proteomic and metabolic levels under defined controlled conditions are currently lacking. Metabolic control analysis is being exploited in a systems biology study of the eukaryotic cell. Using chemostat culture, we have measured the impact of changes in flux (growth rate) on the transcriptome, proteome, endometabolome and exometabolome of the yeast Saccharomyces cerevisiae. Each functional genomic level shows clear growth-rate-associated trends and discriminates between carbon-sufficient and carbon-limited conditions. Genes consistently and significantly upregulated with increasing growth rate are frequently essential and encode evolutionarily conserved proteins of known function that participate in many protein-protein interactions. In contrast, more unknown, and fewer essential, genes are downregulated with increasing growth rate; their protein products rarely interact with one another. A large proportion of yeast genes under positive growth-rate control share orthologs with other eukaryotes, including humans. Significantly, transcription of genes encoding components of the TOR complex (a major controller of eukaryotic cell growth) is not subject to growth-rate regulation. Moreover, integrative studies reveal the extent and importance of post-transcriptional control, patterns of control of metabolic fluxes at the level of enzyme synthesis, and the relevance of specific enzymatic reactions in the control of metabolic fluxes during cell growth. This work constitutes a first comprehensive systems biology study on growth-rate control in the eukaryotic cell. The results have direct implications for advanced studies on cell growth, in vivo regulation of metabolic fluxes for comprehensive metabolic engineering, and for the design of genome-scale systems biology models of the eukaryotic cell.

Growth control of the eukaryote cell: a systems biology study in yeast

PubMed Central

Castrillo, Juan I; Zeef, Leo A; Hoyle, David C; Zhang, Nianshu; Hayes, Andrew; Gardner, David CJ; Cornell, Michael J; Petty, June; Hakes, Luke; Wardleworth, Leanne; Rash, Bharat; Brown, Marie; Dunn, Warwick B; Broadhurst, David; O'Donoghue, Kerry; Hester, Svenja S; Dunkley, Tom PJ; Hart, Sarah R; Swainston, Neil; Li, Peter; Gaskell, Simon J; Paton, Norman W; Lilley, Kathryn S; Kell, Douglas B; Oliver, Stephen G

2007-01-01

Background Cell growth underlies many key cellular and developmental processes, yet a limited number of studies have been carried out on cell-growth regulation. Comprehensive studies at the transcriptional, proteomic and metabolic levels under defined controlled conditions are currently lacking. Results Metabolic control analysis is being exploited in a systems biology study of the eukaryotic cell. Using chemostat culture, we have measured the impact of changes in flux (growth rate) on the transcriptome, proteome, endometabolome and exometabolome of the yeast Saccharomyces cerevisiae. Each functional genomic level shows clear growth-rate-associated trends and discriminates between carbon-sufficient and carbon-limited conditions. Genes consistently and significantly upregulated with increasing growth rate are frequently essential and encode evolutionarily conserved proteins of known function that participate in many protein-protein interactions. In contrast, more unknown, and fewer essential, genes are downregulated with increasing growth rate; their protein products rarely interact with one another. A large proportion of yeast genes under positive growth-rate control share orthologs with other eukaryotes, including humans. Significantly, transcription of genes encoding components of the TOR complex (a major controller of eukaryotic cell growth) is not subject to growth-rate regulation. Moreover, integrative studies reveal the extent and importance of post-transcriptional control, patterns of control of metabolic fluxes at the level of enzyme synthesis, and the relevance of specific enzymatic reactions in the control of metabolic fluxes during cell growth. Conclusion This work constitutes a first comprehensive systems biology study on growth-rate control in the eukaryotic cell. The results have direct implications for advanced studies on cell growth, in vivo regulation of metabolic fluxes for comprehensive metabolic engineering, and for the design of genome-scale systems biology models of the eukaryotic cell. PMID:17439666

Information Fluxes as Concept for Categorizations of Life

NASA Astrophysics Data System (ADS)

Hildenbrand, Georg; Hausmann, M.

2012-05-01

Definitions of life are controversially discussed; however, they are mostly depending on bio- evolutionary driven arguments. Here, we propose a systematic, theoretical approach to the question what life is, by categorization and classification of different levels of life. This approach is mainly based on the analysis of information flux occurring in systems being suspicious to be alive, and on the analysis of their power of environmental control. In a first step, we show that all biological definitions of life can be derived from basic physical principles of entropy (number of possible states of a thermodynamic system) and of the energy needed for controlling entropic development. In a next step we discuss how any process where information flux is generated, regardless of its materialization is defined and related to classical definitions of life. In a third step we resume the proposed classification scheme in its most basic way, looking only for existence of data storage, its processing, and its environmental control. We join inhere a short discussion how the materialization of information fluxes can take place depending on the special properties of the four basic physical forces. Having done all this we are able to give everybody a classification catalogue at hand that one can categorize the kind of life one is talking about, thus overcoming the obstacles deriving from the simple appearing question whether something is alive or not. On its most basic level as presented here, our scheme offers a categorization for fire, crystals, prions, viruses, spores, up to cells and even tardigrada and cryostases.

SAMOS Surface Fluxes

NASA Astrophysics Data System (ADS)

Smith, Shawn; Bourassa, Mark

2014-05-01

The development of a new surface flux dataset based on underway meteorological observations from research vessels will be presented. The research vessel data center at the Florida State University routinely acquires, quality controls, and distributes underway surface meteorological and oceanographic observations from over 30 oceanographic vessels. These activities are coordinated by the Shipboard Automated Meteorological and Oceanographic System (SAMOS) initiative in partnership with the Rolling Deck to Repository (R2R) project. Recently, the SAMOS data center has used these underway observations to produce bulk flux estimates for each vessel along individual cruise tracks. A description of this new flux product, along with the underlying data quality control procedures applied to SAMOS observations, will be provided. Research vessels provide underway observations at high-temporal frequency (1 min. sampling interval) that include navigational (position, course, heading, and speed), meteorological (air temperature, humidity, wind, surface pressure, radiation, rainfall), and oceanographic (surface sea temperature and salinity) samples. Vessels recruited to the SAMOS initiative collect a high concentration of data within the U.S. continental shelf and also frequently operate well outside routine shipping lanes, capturing observations in extreme ocean environments (Southern, Arctic, South Atlantic, and South Pacific oceans). These observations are atypical for their spatial and temporal sampling, making them very useful for many applications including validation of numerical models and satellite retrievals, as well as local assessments of natural variability. Individual SAMOS observations undergo routine automated quality control and select vessels receive detailed visual data quality inspection. The result is a quality-flagged data set that is ideal for calculating turbulent flux estimates. We will describe the bulk flux algorithms that have been applied to the observations and the choices of constants that are used. Analysis of the preliminary SAMOS flux products will be presented, including spatial and temporal coverage for each derived parameter. The unique quality and sampling locations of research vessel observations and their independence from many models and products makes them ideal for validation studies. The strengths and limitations of research observations for flux validation studies will be discussed. The authors welcome a discussion with the flux community regarding expansion of the SAMOS program to include additional international vessels, thus facilitating and expansion of this research vessel-based flux product.

Contamination control and plume assessment of low-energy thrusters

NASA Technical Reports Server (NTRS)

Scialdone, John J.

1993-01-01

Potential contamination of a spacecraft cryogenic surface by a xenon (Xe) ion generator was evaluated. The analysis involves the description of the plume exhausted from the generator with its relative component fluxes on the spacecraft surfaces, and verification of the conditions for condensation, adsorption, and sputtering at those locations. The data describing the plume fluxes and their effects on surfaces were obtained from two sources: the tests carried out with the Xe generator in a small vacuum chamber to indicate deposits and sputter on monitor slides; and the extensive tests with a mercury (Hg) ion thruster in a large vacuum chamber. The Hg thruster tests provided data on the neutrals, on low-energy ion fluxes, on high-energy ion fluxes, and on sputtered materials at several locations within the plume.

Aerothermodynamic Environments Definition for the Mars Science Laboratory Entry Capsule

NASA Technical Reports Server (NTRS)

Edquist, Karl T.; Dyakonov, Artem A.; Wright, Michael J.; Tang, Chun Y.

2007-01-01

An overview of the aerothermodynamic environments definition status is presented for the Mars Science Laboratory entry vehicle. The environments are based on Navier-Stokes flowfield simulations on a candidate aeroshell geometry and worst-case entry heating trajectories. Uncertainties for the flowfield predictions are based primarily on available ground data since Mars flight data are scarce. The forebody aerothermodynamics analysis focuses on boundary layer transition and turbulent heating augmentation. Turbulent transition is expected prior to peak heating, a first for Mars entry, resulting in augmented heat flux and shear stress at the same heatshield location. Afterbody computations are also shown with and without interference effects of reaction control system thruster plumes. Including uncertainties, analysis predicts that the heatshield may experience peaks of 225 W/sq cm for turbulent heat flux, 0.32 atm for stagnation pressure, and 400 Pa for turbulent shear stress. The afterbody heat flux without thruster plume interference is predicted to be 7 W/sq cm on the backshell and 10 W/sq cm on the parachute cover. If the reaction control jets are fired near peak dynamic pressure, the heat flux at localized areas could reach as high as 76 W/sq cm on the backshell and 38 W/sq cm on the parachute cover, including uncertainties. The final flight environments used for hardware design will be updated for any changes in the aeroshell configuration, heating design trajectories, or uncertainties.

The 'fine structure' of nutrient dynamics in rivers: ten years of study using high-frequency monitoring

NASA Astrophysics Data System (ADS)

Jordan, Phil; Melland, Alice; Shore, Mairead; Mellander, Per-Erik; Shortle, Ger; Ryan, David; Crockford, Lucy; Macintosh, Katrina; Campbell, Julie; Arnscheidt, Joerg; Cassidy, Rachel

2014-05-01

A complete appraisal of material fluxes in flowing waters is really only possibly with high time resolution data synchronous with measurements of discharge. Defined by Kirchner et al. (2004; Hydrological Processes, 18/7) as the high-frequency wave of the future and with regard to disentangling signal noise from process pattern, this challenge has been met in terms of nutrient flux monitoring by automated bankside analysis. In Ireland over a ten-year period, time-series nutrient data collected on a sub-hourly basis in rivers have been used to distinguish fluxes from different catchment sources and pathways and to provide more certain temporal pictures of flux for the comparative definition of catchment nutrient dynamics. In catchments where nutrient fluxes are particularly high and exhibit a mix of extreme diffuse and point source influences, high time resolution data analysis indicates that there are no satisfactory statistical proxies for seasonal or annual flux predictions that use coarse datasets. Or at least exposes the limits of statistical approaches to catchment scale and hydrological response. This has profound implications for catchment monitoring programmes that rely on modelled relationships. However, using high resolution monitoring for long term assessments of catchment mitigation measures comes with further challenges. Sustaining continuous wet chemistry analysis at river stations is resource intensive in terms of capital, maintenance and quality assurance. Furthermore, big data capture requires investment in data management systems and analysis. These two institutional challenges are magnified when considering the extended time period required to identify the influences of land-based nutrient control measures on water based systems. Separating the 'climate signal' from the 'source signal' in river nutrient flux data is a major analysis challenge; more so when tackled with anything but higher resolution data. Nevertheless, there is scope to lower costs in bankside analysis through technology development, and the scientific advantages of these data are clear and exciting. When integrating its use with policy appraisal, it must be made clear that the advances in river process understanding from high resolution monitoring data capture come as a package with the ability to make more informed decisions through an investment in better information.

A ground track control algorithm for the Topographic Mapping Laser Altimeter (TMLA)

NASA Technical Reports Server (NTRS)

Blaes, V.; Mcintosh, R.; Roszman, L.; Cooley, J.

1993-01-01

The results of an analysis of an algorithm that will provide autonomous onboard orbit control using orbits determined with Global Positioning System (GPS) data. The algorithm uses the GPS data to (1) compute the ground track error relative to a fixed longitude grid, and (2) determine the altitude adjustment required to correct the longitude error. A program was written on a personal computer (PC) to test the concept for numerous altitudes and values of solar flux using a simplified orbit model including only the J sub 2 zonal harmonic and simple orbit decay computations. The algorithm was then implemented in a precision orbit propagation program having a full range of perturbations. The analysis showed that, even with all perturbations (including actual time histories of solar flux variation), the algorithm could effectively control the spacecraft ground track and yield more than 99 percent Earth coverage in the time required to complete one coverage cycle on the fixed grid (220 to 230 days depending on altitude and overlap allowance).

User's Guide for ERB 7 Matrix. Volume 1: Experiment Description and Quality Control Report for Year 1

NASA Technical Reports Server (NTRS)

Tighe, R. J.; Shen, M. Y. H.

1984-01-01

The Nimbus 7 ERB MATRIX Tape is a computer program in which radiances and irradiances are converted into fluxes which are used to compute the basic scientific output parameters, emitted flux, albedo, and net radiation. They are spatially averaged and presented as time averages over one-day, six-day, and monthly periods. MATRIX data for the period November 16, 1978 through October 31, 1979 are presented. Described are the Earth Radiation Budget experiment, the Science Quality Control Report, Items checked by the MATRIX Science Quality Control Program, and Science Quality Control Data Analysis Report. Additional material from the detailed scientific quality control of the tapes which may be very useful to a user of the MATRIX tapes is included. Known errors and data problems and some suggestions on how to use the data for further climatologic and atmospheric physics studies are also discussed.

Control mechanisms operating for lipid biosynthesis differ in oil-palm (Elaeis guineensis Jacq.) and olive (Olea europaea L.) callus cultures.

PubMed Central

Ramli, Umi S; Baker, Darren S; Quant, Patti A; Harwood, John L

2002-01-01

As a prelude to detailed flux control analysis of lipid synthesis in plants, we have examined the latter in tissue cultures from two important oil crops, olive (Olea europaea L.) and oil palm (Elaeis guineensis Jacq.). Temperature was used to manipulate the overall rate of lipid formation in order to characterize and validate the system to be used for analysis. With [1-14C]acetate as a precursor, an increase in temperature from 20 to 30 degrees C produced nearly a doubling of total lipid labelling. This increase in total lipids did not change the radioactivity in the intermediate acyl-(acyl carrier protein) or acyl-CoA pools, indicating that metabolism of these pools did not exert any significant constraint for overall synthesis. In contrast, there were some differences in the proportional labelling of fatty acids and of lipid classes at the two temperatures. The higher temperature caused a decrease in polyunsaturated fatty acid labelling and an increase in the proportion of triacylglycerol labelling in both calli. The intermediate diacylglycerol was increased in olive, but not in oil palm. Overall the data indicate the suitability of olive and oil-palm cultures for the study of lipid synthesis and indicate that de novo fatty acid synthesis may exert more flux control than complex lipid assembly. In olive, diacylglycerol acyltransferase may exert significant flux control when lipid synthesis is rapid. PMID:12023881

Carbon Dioxide Flux from Rice Paddy Soils in Central China: Effects of Intermittent Flooding and Draining Cycles

PubMed Central

Liu, Yi; Wan, Kai-yuan; Tao, Yong; Li, Zhi-guo; Zhang, Guo-shi; Li, Shuang-lai; Chen, Fang

2013-01-01

A field experiment was conducted to (i) examine the diurnal and seasonal soil carbon dioxide (CO2) fluxes pattern in rice paddy fields in central China and (ii) assess the role of floodwater in controlling the emissions of CO2 from soil and floodwater in intermittently draining rice paddy soil. The soil CO2 flux rates ranged from −0.45 to 8.62 µmol.m−2.s−1 during the rice-growing season. The net effluxes of CO2 from the paddy soil were lower when the paddy was flooded than when it was drained. The CO2 emissions for the drained conditions showed distinct diurnal variation with a maximum efflux observed in the afternoon. When the paddy was flooded, daytime soil CO2 fluxes reversed with a peak negative efflux just after midday. In draining/flooding alternating periods, a sudden pulse-like event of rapidly increasing CO2 efflux occured in response to re-flooding after draining. Correlation analysis showed a negative relation between soil CO2 flux and temperature under flooded conditions, but a positive relation was found under drained conditions. The results showed that draining and flooding cycles play a vital role in controlling CO2 emissions from paddy soils. PMID:23437170

Geometrical Relationship Between Interplanetary Flux Ropes and Their Solar Sources

NASA Astrophysics Data System (ADS)

Marubashi, K.; Akiyama, S.; Yashiro, S.; Gopalswamy, N.; Cho, K.-S.; Park, Y.-D.

2015-05-01

We investigated the physical connection between interplanetary flux ropes (IFRs) near Earth and coronal mass ejections (CMEs) by comparing the magnetic field structures of IFRs and CME source regions. The analysis is based on the list of 54 pairs of ICMEs (interplanetary coronal mass ejections) and CMEs that are taken to be the most probable solar source events. We first attempted to identify the flux rope structure in each of the 54 ICMEs by fitting models with a cylinder and torus magnetic field geometry, both with a force-free field structure. This analysis determined the possible geometries of the identified flux ropes. Then we compared the flux rope geometries with the magnetic field structure of the solar source regions. We obtained the following results: (1) Flux rope structures are seen in 51 ICMEs out of the 54. The result implies that all ICMEs have an intrinsic flux rope structure, if the three exceptional cases are attributed to unfavorable observation conditions. (2) It is possible to find flux rope geometries with the main axis orientation close to the orientation of the magnetic polarity inversion line (PIL) in the solar source regions, the differences being less than 25°. (3) The helicity sign of an IFR is strongly controlled by the location of the solar source: flux ropes with positive (negative) helicity are associated with sources in the southern (northern) hemisphere (six exceptions were found). (4) Over two-thirds of the sources in the northern hemisphere are concentrated along PILs with orientations of 45° ± 30° (measured clockwise from the east), and over two-thirds in the southern hemisphere along PILs with orientations of 135° ± 30°, both corresponding to the Hale boundaries. These results strongly support the idea that a flux rope with the main axis parallel to the PIL erupts in a CME and that the erupted flux rope propagates through the interplanetary space with its orientation maintained and is observed as an IFR.

[Partial pressure of CO2 and CO2 degassing fluxes of Huayuankou and Xiaolangdi Station affected by Xiaolangdi Reservoir].

PubMed

Zhang, Yong-ling; Yang, Xiao-lin; Zhang, Dong

2015-01-01

According to periodic sampling analysis per month in Xiaolangdi station and Huayuankou station from November 2011 to October 2012, combined with continuous sampling analysis of Xiaolangdi Reservoir during runoff and sediment control period in 2012, partial pressure of CO2 (pCO2) in surface water were calculated based on Henry's Law, pCO2 features and air-water CO2 degassing fluxes of Huayuankou station and Xiaolangdi station affected by Xiaolangdi Reservoir were studied. The results were listed as follows, when Xiaolangdi Reservoir operated normally, pCO2 in surface water of Xiaolangdi station and Huayuankou station varied from 82 to 195 Pa and from 99 to 228 Pa, moreover, pCO2 in surface water from July to September were distinctly higher than those in other months; meanwhile, pCO, in surface water from Huayuankou station were higher than that from Xiaolangdi station. During runoff and sediment control period of Xiaolangdi Reservoir, two hydrological stations commonly indicated that pCO2 in surface water during water draining were obviously lower than those during sediment releasing. Whether in the period of normal operation or runoff and sediment control, pCO2 in surface water had positive relations to DIC content in two hydrological stations. Since the EpCO,/AOU value was higher than the theoretical value of 0. 62, the biological aerobic respiration effect had distinct contribution to pCO2. Throughout the whole year, air-water CO2 degassing fluxes from Xiaolangdi station and Huayuankou station were 0.486 p.mol (m2 s) -l and 0.588 pmol (m2 x s)(-1) respectively; When Xiaolangdi Reservoir operated normally, air-water CO, degassing fluxes in Huayuankou station were higher than that in Xiaolangdi station; during runoff and sediment control from Xiaolangdi Reservoir, two hydrological stations had one observation result in common, namely, air-water CO2 degassing fluxes in the period of water draining were obviously lower than that in the period of sediment releasing.

Flux Imbalance Analysis and the Sensitivity of Cellular Growth to Changes in Metabolite Pools

PubMed Central

Reznik, Ed; Mehta, Pankaj; Segrè, Daniel

2013-01-01

Stoichiometric models of metabolism, such as flux balance analysis (FBA), are classically applied to predicting steady state rates - or fluxes - of metabolic reactions in genome-scale metabolic networks. Here we revisit the central assumption of FBA, i.e. that intracellular metabolites are at steady state, and show that deviations from flux balance (i.e. flux imbalances) are informative of some features of in vivo metabolite concentrations. Mathematically, the sensitivity of FBA to these flux imbalances is captured by a native feature of linear optimization, the dual problem, and its corresponding variables, known as shadow prices. First, using recently published data on chemostat growth of Saccharomyces cerevisae under different nutrient limitations, we show that shadow prices anticorrelate with experimentally measured degrees of growth limitation of intracellular metabolites. We next hypothesize that metabolites which are limiting for growth (and thus have very negative shadow price) cannot vary dramatically in an uncontrolled way, and must respond rapidly to perturbations. Using a collection of published datasets monitoring the time-dependent metabolomic response of Escherichia coli to carbon and nitrogen perturbations, we test this hypothesis and find that metabolites with negative shadow price indeed show lower temporal variation following a perturbation than metabolites with zero shadow price. Finally, we illustrate the broader applicability of flux imbalance analysis to other constraint-based methods. In particular, we explore the biological significance of shadow prices in a constraint-based method for integrating gene expression data with a stoichiometric model. In this case, shadow prices point to metabolites that should rise or drop in concentration in order to increase consistency between flux predictions and gene expression data. In general, these results suggest that the sensitivity of metabolic optima to violations of the steady state constraints carries biologically significant information on the processes that control intracellular metabolites in the cell. PMID:24009492

Nutrient control of phytoplankton photosynthesis in the western North Atlantic

NASA Technical Reports Server (NTRS)

Platt, Trevor; Sathyendranath, Shubha; Ulloa, Osvaldo; Harrison, William G.; Hoepffner, Nicolas; Goes, Joaquim

1992-01-01

Results from several years of oceanographic cruises are reported which show that the parameters of the photosynthesis-light curve of the flora of the North Sargasso Sea are remarkably constant in magnitude, except during the spring phytoplankton bloom when their magnitudes are noticeably higher. These results are interpreted as providing direct evidence for nutrient control of photosynthesis in the open ocean. The findings also reinforce the plausibility of using biogeochemical provinces to partition the ocean into manageable units for basin- or global-scale analysis. They show that seasonal changes in critical parameter should not be overlooked if robust carbon budgets are to be constructed, and illustrate the value of attacking the parameters that control the key fluxes, rather than the fluxes themselves, when investigating the ocean carbon cycle.

Magnetic Reconnection Results on the Swarthmore Spheromak Experiment

NASA Astrophysics Data System (ADS)

Kornack, T. W.; Sollins, P. K.; Brown, M. R.

1997-11-01

Linear and 2D arrays of magnetic probes are used to study magnetic reconnection in the Swarthmore Spheromak Experiment (SSX). Opposing coaxial plasma guns form two identical spheromaks into adjacent 0.5 m diameter copper flux conservers. The flux conservers have symmetrical openings that allow the spheromaks to merge in a controlled manner. The stable equilibrium of the spheromaks provides a reservoir of magnetic flux for reconnection experiments. Currently, the magnetic configuration of the spheromaks allows the study of counter-helicity reconnection. Preliminary analysis will be presented and may include 2D B field movies of the reconnection region, measurement of the reconnection rate and comparison to the Sweet-Parker and standard Petschek models.

Seawater intrusion vulnerability indicators for freshwater lenses in strip islands

NASA Astrophysics Data System (ADS)

Morgan, L.; Werner, A. D.

2014-12-01

Freshwater lenses on small islands have been described as some of the most vulnerable aquifer systems in the world. Yet, little guidance is available regarding methods for rapidly assessing the vulnerability of freshwater lenses to the potential effects of climate change. To address this gap we employ a steady-state analytic modelling approach to develop seawater intrusion (SWI) vulnerability indicator equations. The vulnerability indicator equations quantify the propensity for SWI to occur in strip islands due to both recharge change and sea-level rise (SLR) (incorporating the effect of land surface inundation (LSI)). This work extends that of Werner et al. (2012) who developed SWI vulnerability indicator equations for unconfined and confined continental aquifers, and did not consider LSI. Flux-controlled and head-controlled conceptualisations of freshwater lenses are adopted. Under flux-controlled conditions the water table is able to rise unencumbered by land surface effects. Under head-controlled conditions the head is fixed at the centre of the lens due to, for example, centrally located topographic controls, surface water features or pumping. A number of inferences about SWI vulnerability in freshwater lenses can be made from the analysis: (1) SWI vulnerability indicators for SLR (under flux-controlled conditions) are proportional to lens thickness (or volume) and the rate of LSI and inversely proportional to island width; (2) SWI vulnerability indicators for recharge change (under flux-controlled conditions) are proportional to lens thickness (or volume) and inversely proportional to recharge; (3) SLR has greater impact under head-controlled conditions rather than flux-controlled conditions, whereas the opposite is the case for LSI and recharge change. Example applications to several case studies illustrate use of the method for rapidly ranking lenses according to vulnerability, thereby allowing for prioritisation of areas where further and more detailed SWI investigations may be required. References Werner, A.D., Ward, J.D., Morgan, L.K., Simmons, C.T., Robinson, N.I., Teubner, M.D., 2012. Vulnerability indicators of seawater intrusion. Ground Water 50(1), 48-58. doi:10.1111/j.1745-6584.2011.00817.x.

Metabolic regulation and maximal reaction optimization in the central metabolism of a yeast cell

NASA Astrophysics Data System (ADS)

Kasbawati, Gunawan, A. Y.; Hertadi, R.; Sidarto, K. A.

2015-03-01

Regulation of fluxes in a metabolic system aims to enhance the production rates of biotechnologically important compounds. Regulation is held via modification the cellular activities of a metabolic system. In this study, we present a metabolic analysis of ethanol fermentation process of a yeast cell in terms of continuous culture scheme. The metabolic regulation is based on the kinetic formulation in combination with metabolic control analysis to indicate the key enzymes which can be modified to enhance ethanol production. The model is used to calculate the intracellular fluxes in the central metabolism of the yeast cell. Optimal control is then applied to the kinetic model to find the optimal regulation for the fermentation system. The sensitivity results show that there are external and internal control parameters which are adjusted in enhancing ethanol production. As an external control parameter, glucose supply should be chosen in appropriate way such that the optimal ethanol production can be achieved. For the internal control parameter, we find three enzymes as regulation targets namely acetaldehyde dehydrogenase, pyruvate decarboxylase, and alcohol dehydrogenase which reside in the acetaldehyde branch. Among the three enzymes, however, only acetaldehyde dehydrogenase has a significant effect to obtain optimal ethanol production efficiently.

Dynamic analysis of gas-core reactor system

NASA Technical Reports Server (NTRS)

Turner, K. H., Jr.

1973-01-01

A heat transfer analysis was incorporated into a previously developed model CODYN to obtain a model of open-cycle gaseous core reactor dynamics which can predict the heat flux at the cavity wall. The resulting model was used to study the sensitivity of the model to the value of the reactivity coefficients and to determine the system response for twenty specified perturbations. In addition, the model was used to study the effectiveness of several control systems in controlling the reactor. It was concluded that control drums located in the moderator region capable of inserting reactivity quickly provided the best control.

[Characteristics of water and heat fluxes and its footprint climatology on farmland in low hilly region of red soil].

PubMed

Li, Yang; Jing, Yuan Shu; Qin, Ben Ben

2017-01-01

The analysis of the characteristics and footprint climatology of farmland water and heat fluxes has great significance to strengthen regional climate resource management and improve the hydrothermal resource utilization in the region of red soil. Based on quality controlled data from large aperture scintillometer and automatic meteorological station in hilly region of red soil, this paper analyzed in detail the characteristics of farmland water and heat fluxes at different temporal scales and the corresponding source area distribution of flux measurement in the non-rainy season and crop growth period in hilly region of red soil. The results showed that the diurnal variation of water and heat fluxes showed a unimodal trend, but compared with the sunny day, the diurnal variation curves fluctuated more complicatedly on cloudy day. In the whole, either ten-day periods or month scale, the water and heat fluxes were greater in August than in September, while the net radiation flux was more distributed to latent heat exchange. The proportion of net radiation to latent heat flux decreased in September compared to August, but the sensible heat flux was vice versa. With combined effects of weather conditions (particularly wind), stability, and surface condition, the source areas of flux measurement at different temporal scales showed different distribution characteristics. Combined with the underlying surface crops, the source areas at different temporal scales also had different contribution sources.

What are the greenhouse gas observing system requirements for reducing fundamental biogeochemical process uncertainty? Amazon wetland CH4 emissions as a case study

NASA Astrophysics Data System (ADS)

Bloom, A. Anthony; Lauvaux, Thomas; Worden, John; Yadav, Vineet; Duren, Riley; Sander, Stanley P.; Schimel, David S.

2016-12-01

Understanding the processes controlling terrestrial carbon fluxes is one of the grand challenges of climate science. Carbon cycle process controls are readily studied at local scales, but integrating local knowledge across extremely heterogeneous biota, landforms and climate space has proven to be extraordinarily challenging. Consequently, top-down or integral flux constraints at process-relevant scales are essential to reducing process uncertainty. Future satellite-based estimates of greenhouse gas fluxes - such as CO2 and CH4 - could potentially provide the constraints needed to resolve biogeochemical process controls at the required scales. Our analysis is focused on Amazon wetland CH4 emissions, which amount to a scientifically crucial and methodologically challenging case study. We quantitatively derive the observing system (OS) requirements for testing wetland CH4 emission hypotheses at a process-relevant scale. To distinguish between hypothesized hydrological and carbon controls on Amazon wetland CH4 production, a satellite mission will need to resolve monthly CH4 fluxes at a ˜ 333 km resolution and with a ≤ 10 mg CH4 m-2 day-1 flux precision. We simulate a range of low-earth orbit (LEO) and geostationary orbit (GEO) CH4 OS configurations to evaluate the ability of these approaches to meet the CH4 flux requirements. Conventional LEO and GEO missions resolve monthly ˜ 333 km Amazon wetland fluxes at a 17.0 and 2.7 mg CH4 m-2 day-1 median uncertainty level. Improving LEO CH4 measurement precision by 2 would only reduce the median CH4 flux uncertainty to 11.9 mg CH4 m-2 day-1. A GEO mission with targeted observing capability could resolve fluxes at a 2.0-2.4 mg CH4 m-2 day-1 median precision by increasing the observation density in high cloud-cover regions at the expense of other parts of the domain. We find that residual CH4 concentration biases can potentially reduce the ˜ 5-fold flux CH4 precision advantage of a GEO mission to a ˜ 2-fold advantage (relative to a LEO mission). For residual CH4 bias correlation lengths of 100 km, the GEO can nonetheless meet the ≤ 10 mg CH4 m-2 day-1 requirements for systematic biases ≤ 10 ppb. Our study demonstrates that process-driven greenhouse gas OS simulations can enhance conventional uncertainty reduction assessments by quantifying the OS characteristics required for testing biogeochemical process hypotheses.

Three-Loop Automatic of Control System the Landfill of Household Solid Waste

NASA Astrophysics Data System (ADS)

Sereda, T. G.; Kostarev, S. N.

2017-05-01

The analysis of models of governance ground municipal solid waste (MSW). Considered a distributed circuit (spatio-temporal) ground control model. Developed a dynamic model of multicontour control landfill. Adjustable parameters are defined (the ratio of CH4 CO2 emission/fluxes, concentrations of heavy metals ions) and control (purging array, irrigation, adding reagents). Based on laboratory studies carried out with the analysis of equity flows and procedures developed by the transferring matrix that takes into account the relationship control loops. A system of differential equations in the frequency and time domains. Given the numerical approaches solving systems of differential equations in finite differential form.

Grazing effects on ecosystem CO2 fluxes differ among temperate steppe types in Eurasia.

PubMed

Hou, Longyu; Liu, Yan; Du, Jiancai; Wang, Mingya; Wang, Hui; Mao, Peisheng

2016-07-01

Grassland ecosystems play a critical role in regulating CO2 fluxes into and out of the Earth's surface. Whereas previous studies have often addressed single fluxes of CO2 separately, few have addressed the relation among and controls of multiple CO2 sub-fluxes simultaneously. In this study, we examined the relation among and controls of individual CO2 fluxes (i.e., GEP, NEP, SR, ER, CR) in three contrasting temperate steppes of north China, as affected by livestock grazing. Our findings show that climatic controls of the seasonal patterns in CO2 fluxes were both individual flux- and steppe type-specific, with significant grazing impacts observed for canopy respiration only. In contrast, climatic controls of the annual patterns were only individual flux-specific, with minor grazing impacts on the individual fluxes. Grazing significantly reduced the mean annual soil respiration rate in the typical and desert steppes, but significantly enhanced both soil and canopy respiration in the meadow steppe. Our study suggests that a reassessment of the role of livestock grazing in regulating GHG exchanges is imperative in future studies.

Connection stiffness and dynamical docking process of flux pinned spacecraft modules

NASA Astrophysics Data System (ADS)

Lu, Yong; Zhang, Mingliang; Gao, Dong

2014-02-01

This paper describes a novel kind of potential flux pinned docking system that consists of guidance navigation and control system, the traditional extrusion type propulsion system, and a flux pinned docking interface. Because of characteristics of passive stability of flux pinning, the docking control strategy of flux pinned docking system only needs a series of sequential control rather than necessary active feedback control, as well as avoidance of hazardous collision accident. The flux pinned force between YBaCuO (YBCO) high temperature superconductor bulk and permanent magnet is able to be given vent based on the identical current loop model and improved image dipole model, which can be validated experimentally. Thus, the connection stiffness between two flux pinned spacecraft modules can be calculated based on Hooke's law. This connection stiffness matrix at the equilibrium position has the positive definite performance, which can validate the passively stable connection of two flux pinned spacecraft modules theoretically. Furthermore, the relative orbital dynamical equation of two flux pinned spacecraft modules can be established based on Clohessy-Wiltshire's equations and improved image dipole model. The dynamical docking process between two flux pinned spacecraft modules can be obtained by way of numerical simulation, which suggests the feasibility of flux pinned docking system.

Connection stiffness and dynamical docking process of flux pinned spacecraft modules

DOE Office of Scientific and Technical Information (OSTI.GOV)

Lu, Yong; Zhang, Mingliang, E-mail: niudun12@126.com; Gao, Dong

2014-02-14

This paper describes a novel kind of potential flux pinned docking system that consists of guidance navigation and control system, the traditional extrusion type propulsion system, and a flux pinned docking interface. Because of characteristics of passive stability of flux pinning, the docking control strategy of flux pinned docking system only needs a series of sequential control rather than necessary active feedback control, as well as avoidance of hazardous collision accident. The flux pinned force between YBaCuO (YBCO) high temperature superconductor bulk and permanent magnet is able to be given vent based on the identical current loop model and improvedmore » image dipole model, which can be validated experimentally. Thus, the connection stiffness between two flux pinned spacecraft modules can be calculated based on Hooke's law. This connection stiffness matrix at the equilibrium position has the positive definite performance, which can validate the passively stable connection of two flux pinned spacecraft modules theoretically. Furthermore, the relative orbital dynamical equation of two flux pinned spacecraft modules can be established based on Clohessy-Wiltshire's equations and improved image dipole model. The dynamical docking process between two flux pinned spacecraft modules can be obtained by way of numerical simulation, which suggests the feasibility of flux pinned docking system.« less

The Regulation of Growth in the Distal Elongation Zone of Maize Roots

NASA Technical Reports Server (NTRS)

Evans, Michael L.

1998-01-01

The major goals of the proposed research were 1. To develop specialized software for automated whole surface root expansion analysis and to develop technology for controlled placement of surface electrodes for analysis of relationships between root growth and root pH and electrophysiological properties. 2. To measure surface pH patterns and determine the possible role of proton flux in gravitropic sensing or response, and 3. To determine the role of auxin transport in establishment of patterns of proton flux and electrical gradients during the gravitropic response of roots with special emphasis on the role of the distal elongation zone in the early phases of the gravitropic response.

An accurate reactive power control study in virtual flux droop control

NASA Astrophysics Data System (ADS)

Wang, Aimeng; Zhang, Jia

2017-12-01

This paper investigates the problem of reactive power sharing based on virtual flux droop method. Firstly, flux droop control method is derived, where complicated multiple feedback loops and parameter regulation are avoided. Then, the reasons for inaccurate reactive power sharing are theoretically analyzed. Further, a novel reactive power control scheme is proposed which consists of three parts: compensation control, voltage recovery control and flux droop control. Finally, the proposed reactive power control strategy is verified in a simplified microgrid model with two parallel DGs. The simulation results show that the proposed control scheme can achieve accurate reactive power sharing and zero deviation of voltage. Meanwhile, it has some advantages of simple control and excellent dynamic and static performance.

Design comparison of single phase outer and inner-rotor hybrid excitation flux switching motor for hybrid electric vehicles

NASA Astrophysics Data System (ADS)

Mazlan, Mohamed Mubin Aizat; Sulaiman, Erwan; Husin, Zhafir Aizat; Othman, Syed Muhammad Naufal Syed; Khan, Faisal

2015-05-01

In hybrid excitation machines (HEMs), there are two main flux sources which are permanent magnet (PM) and field excitation coil (FEC). These HEMs have better features when compared with the interior permanent magnet synchronous machines (IPMSM) used in conventional hybrid electric vehicles (HEVs). Since all flux sources including PM, FEC and armature coils are located on the stator core, the rotor becomes a single piece structure similar with switch reluctance machine (SRM). The combined flux generated by PM and FEC established more excitation fluxes that are required to produce much higher torque of the motor. In addition, variable DC FEC can control the flux capabilities of the motor, thus the machine can be applied for high-speed motor drive system. In this paper, the comparisons of single-phase 8S-4P outer and inner rotor hybrid excitation flux switching machine (HEFSM) are presented. Initially, design procedures of the HEFSM including parts drawing, materials and conditions setting, and properties setting are explained. Flux comparisons analysis is performed to investigate the flux capabilities at various current densities. Then the flux linkages of PM with DC FEC of various DC FEC current densities are examined. Finally torque performances are analyzed at various armature and FEC current densities for both designs. As a result, the outer-rotor HEFSM has higher flux linkage of PM with DC FEC and higher average torque of approximately 10% when compared with inner-rotor HEFSM.

FluxPyt: a Python-based free and open-source software for 13C-metabolic flux analyses.

PubMed

Desai, Trunil S; Srivastava, Shireesh

2018-01-01

13 C-Metabolic flux analysis (MFA) is a powerful approach to estimate intracellular reaction rates which could be used in strain analysis and design. Processing and analysis of labeling data for calculation of fluxes and associated statistics is an essential part of MFA. However, various software currently available for data analysis employ proprietary platforms and thus limit accessibility. We developed FluxPyt, a Python-based truly open-source software package for conducting stationary 13 C-MFA data analysis. The software is based on the efficient elementary metabolite unit framework. The standard deviations in the calculated fluxes are estimated using the Monte-Carlo analysis. FluxPyt also automatically creates flux maps based on a template for visualization of the MFA results. The flux distributions calculated by FluxPyt for two separate models: a small tricarboxylic acid cycle model and a larger Corynebacterium glutamicum model, were found to be in good agreement with those calculated by a previously published software. FluxPyt was tested in Microsoft™ Windows 7 and 10, as well as in Linux Mint 18.2. The availability of a free and open 13 C-MFA software that works in various operating systems will enable more researchers to perform 13 C-MFA and to further modify and develop the package.

FluxPyt: a Python-based free and open-source software for 13C-metabolic flux analyses

PubMed Central

Desai, Trunil S.

2018-01-01

13C-Metabolic flux analysis (MFA) is a powerful approach to estimate intracellular reaction rates which could be used in strain analysis and design. Processing and analysis of labeling data for calculation of fluxes and associated statistics is an essential part of MFA. However, various software currently available for data analysis employ proprietary platforms and thus limit accessibility. We developed FluxPyt, a Python-based truly open-source software package for conducting stationary 13C-MFA data analysis. The software is based on the efficient elementary metabolite unit framework. The standard deviations in the calculated fluxes are estimated using the Monte-Carlo analysis. FluxPyt also automatically creates flux maps based on a template for visualization of the MFA results. The flux distributions calculated by FluxPyt for two separate models: a small tricarboxylic acid cycle model and a larger Corynebacterium glutamicum model, were found to be in good agreement with those calculated by a previously published software. FluxPyt was tested in Microsoft™ Windows 7 and 10, as well as in Linux Mint 18.2. The availability of a free and open 13C-MFA software that works in various operating systems will enable more researchers to perform 13C-MFA and to further modify and develop the package. PMID:29736347

CSMP (Continuous System Modeling Program) modeling of brushless DC motors

NASA Astrophysics Data System (ADS)

Thomas, S. M.

1984-09-01

Recent improvements in rare earth magnets have made it possible to construct strong, lightweight, high horsepower DC motors. This has occasioned a reassessment of electromechanical actuators as alternatives to comparable pneumatic and hydraulic systems for use in flight control actuators for tactical missiles. This thesis develops a low-order mathematical model for the simulation and analysis of brushless DC motor performance. This model is implemented in CSMP language. It is used to predict such motor performance curves as speed, current and power versus torque. Electronic commutation based on Hall effect sensor positional feedback is simulated. Steady state motor behavior is studied under both constant and variable air gap flux conditions. The variable flux takes two different forms. In the first case, the flux is varied as a simple sinusoid. In the second case, the flux is varied as the sum of a sinusoid and one of its harmonics.

Evaluating Stellarator Divertor Designs with EMC3

NASA Astrophysics Data System (ADS)

Bader, Aaron; Anderson, D. T.; Feng, Y.; Hegna, C. C.; Talmadge, J. N.

2013-10-01

In this paper various improvements of stellarator divertor design are explored. Next step stellarator devices require innovative divertor solutions to handle heat flux loads and impurity control. One avenue is to enhance magnetic flux expansion near strike points, somewhat akin to the X-Divertor concept in Tokamaks. The effect of judiciously placed external coils on flux deposition is calculated for configurations based on the HSX stellarator. In addition, we attempt to optimize divertor plate location to facilitate the external coil placement. Alternate areas of focus involve altering edge island size to elucidate the driving physics in the edge. The 3-D nature of stellarators complicates design and necessitates analysis of new divertor structures with appropriate simulation tools. We evaluate the various configurations with the coupled codes EMC3-EIRENE, allowing us to benchmark configurations based on target heat flux, impurity behavior, radiated power, and transitions to high recycling and detached regimes. Work supported by DOE-SC0006103.

Analysis and simulation of a magnetic bearing suspension system for a laboratory model annular momentum control device

NASA Technical Reports Server (NTRS)

Groom, N. J.; Woolley, C. T.; Joshi, S. M.

1981-01-01

A linear analysis and the results of a nonlinear simulation of a magnetic bearing suspension system which uses permanent magnet flux biasing are presented. The magnetic bearing suspension is part of a 4068 N-m-s (3000 lb-ft-sec) laboratory model annular momentum control device (AMCD). The simulation includes rigid body rim dynamics, linear and nonlinear axial actuators, linear radial actuators, axial and radial rim warp, and power supply and power driver current limits.

Genome-scale fluxes predicted under the guidance of enzyme abundance using a novel hyper-cube shrink algorithm.

PubMed

Xie, Zhengwei; Zhang, Tianyu; Ouyang, Qi

2018-02-01

One of the long-expected goals of genome-scale metabolic modelling is to evaluate the influence of the perturbed enzymes on flux distribution. Both ordinary differential equation (ODE) models and constraint-based models, like Flux balance analysis (FBA), lack the capacity to perform metabolic control analysis (MCA) for large-scale networks. In this study, we developed a hyper-cube shrink algorithm (HCSA) to incorporate the enzymatic properties into the FBA model by introducing a pseudo reaction V constrained by enzymatic parameters. Our algorithm uses the enzymatic information quantitatively rather than qualitatively. We first demonstrate the concept by applying HCSA to a simple three-node network, whereby we obtained a good correlation between flux and enzyme abundance. We then validate its prediction by comparison with ODE and with a synthetic network producing voilacein and analogues in Saccharomyces cerevisiae. We show that HCSA can mimic the state-state results of ODE. Finally, we show its capability of predicting the flux distribution in genome-scale networks by applying it to sporulation in yeast. We show the ability of HCSA to operate without biomass flux and perform MCA to determine rate-limiting reactions. Algorithm was implemented by Matlab and C ++. The code is available at https://github.com/kekegg/HCSA. xiezhengwei@hsc.pku.edu.cn or qi@pku.edu.cn. Supplementary data are available at Bioinformatics online. © The Author (2017). Published by Oxford University Press. All rights reserved. For Permissions, please email: journals.permissions@oup.com

Maximum entropy modeling of metabolic networks by constraining growth-rate moments predicts coexistence of phenotypes

NASA Astrophysics Data System (ADS)

De Martino, Daniele

2017-12-01

In this work maximum entropy distributions in the space of steady states of metabolic networks are considered upon constraining the first and second moments of the growth rate. Coexistence of fast and slow phenotypes, with bimodal flux distributions, emerges upon considering control on the average growth (optimization) and its fluctuations (heterogeneity). This is applied to the carbon catabolic core of Escherichia coli where it quantifies the metabolic activity of slow growing phenotypes and it provides a quantitative map with metabolic fluxes, opening the possibility to detect coexistence from flux data. A preliminary analysis on data for E. coli cultures in standard conditions shows degeneracy for the inferred parameters that extend in the coexistence region.

Controlling Radiative Heat Transfer Across the Mold Flux Layer by the Scattering Effect of the Borosilicate Mold Flux System with Metallic Iron

NASA Astrophysics Data System (ADS)

Yoon, Dae-Woo; Cho, Jung-Wook; Kim, Seon-Hyo

2017-08-01

The present study proposes a countermeasure for regulating total heat flux through the mold flux layer by designed mold flux with additive metallic iron particles. The heat flux through the B2O3-CaO-SiO2-Na2O-CaF2-Fe system was investigated using the infrared emitter technique to evaluate total flux density across the mold flux film. Both scanning electron microscope (SEM) and X-ray diffraction analysis were employed in order to identify the morphological and compositional changes of the crystalline phase, according to increasing iron contents in the mold flux. It was confirmed that the crystalline layer of studied mold fluxes does not have a meaningful effect on the total heat flux density due to the similar structure and fraction of the crystalline phase. The extinction coefficient was measured for glassy mold fluxes using an ultraviolet/visible and a Fourier transformation-infrared ray spectrometer in the range of 0.5 to 5 μm. For analyzing the scattering behavior of iron particles on the extinction coefficient, the number density and diameter of particles were observed by an automated SEM (auto-SEM). With these data, Mie scattering theory is adopted to define the scattering behavior of dispersed iron droplets in glassy matrix. It was found that the theoretical scattering coefficient demonstrated about 1623 to 3295 m-1, which is in accordance with the experimental results. In doing so, this study successfully achieves the strong scattering behavior that would contribute greatly to the optimization of overall heat flux through the mold flux film during the casting process.

Robustness analysis of an air heating plant and control law by using polynomial chaos

DOE Office of Scientific and Technical Information (OSTI.GOV)

Colón, Diego; Ferreira, Murillo A. S.; Bueno, Átila M.

2014-12-10

This paper presents a robustness analysis of an air heating plant with a multivariable closed-loop control law by using the polynomial chaos methodology (MPC). The plant consists of a PVC tube with a fan in the air input (that forces the air through the tube) and a mass flux sensor in the output. A heating resistance warms the air as it flows inside the tube, and a thermo-couple sensor measures the air temperature. The plant has thus two inputs (the fan's rotation intensity and heat generated by the resistance, both measured in percent of the maximum value) and two outputsmore » (air temperature and air mass flux, also in percent of the maximal value). The mathematical model is obtained by System Identification techniques. The mass flux sensor, which is nonlinear, is linearized and the delays in the transfer functions are properly approximated by non-minimum phase transfer functions. The resulting model is transformed to a state-space model, which is used for control design purposes. The multivariable robust control design techniques used is the LQG/LTR, and the controllers are validated in simulation software and in the real plant. Finally, the MPC is applied by considering some of the system's parameters as random variables (one at a time, and the system's stochastic differential equations are solved by expanding the solution (a stochastic process) in an orthogonal basis of polynomial functions of the basic random variables. This method transforms the stochastic equations in a set of deterministic differential equations, which can be solved by traditional numerical methods (That is the MPC). Statistical data for the system (like expected values and variances) are then calculated. The effects of randomness in the parameters are evaluated in the open-loop and closed-loop pole's positions.« less

Gas Fluxing of Molten Aluminum: An Overview

NASA Astrophysics Data System (ADS)

Sigworth, Geoffrey K.; Williams, Edward M.; Chesonis, D. Corleen

The aluminum industry is under continual pressure to improve metal quality, while at the same time reduce costs. Although a reasonably mature technology, there has been a continual evolution in degassing equipment over the years. A detailed review and theoretical analysis is given of the chemical and kinetic factors which control the metal quality after gas fluxing, and the evolution of degassing technology in Alcoa is summarized. Particular emphasis is placed on hydrogen removal, minimization of chlorine use, reduced operating costs and minimization of environmental emissions. Considerations related to inclusion removal are also discussed briefly.

High speed flux feedback for tuning a universal field oriented controller capable of operating in direct and indirect field orientation modes

DOE Office of Scientific and Technical Information (OSTI.GOV)

De Doncker, Rik W. A. A.

The direct (d) and quadrature (q) components of flux, as sensed by flux sensors or determined from voltage and current measurements in a direct field orientation scheme, are processed rapidly and accurately to provide flux amplitude and angular position values for use by the vector rotator of a universal field-oriented (UFO) controller. Flux amplitude (linear or squared) is provided as feedback to tune the UFO controller for operation in direct and indirect field orientation modes and enables smooth transitions from one mode to the other.

High speed flux feedback for tuning a universal field oriented controller capable of operating in direct and indirect field orientation modes

DOE Office of Scientific and Technical Information (OSTI.GOV)

De Doncker, R.W.A.A.

The direct (d) and quadrature (q) components of flux, as sensed by flux sensors or determined from voltage and current measurements in a direct field orientation scheme, are processed rapidly and accurately to provide flux amplitude and angular position values for use by the vector rotator of a universal field-oriented (UFO) controller. Flux amplitude (linear or squared) is provided as feedback to tune the UFO controller for operation in direct and indirect field orientation modes and enables smooth transitions from one mode to the other. 3 figs.

High speed flux feedback for tuning a universal field oriented controller capable of operating in direct and indirect field orientation modes

DOEpatents

De Doncker, R.W.A.A.

1992-09-01

The direct (d) and quadrature (q) components of flux, as sensed by flux sensors or determined from voltage and current measurements in a direct field orientation scheme, are processed rapidly and accurately to provide flux amplitude and angular position values for use by the vector rotator of a universal field-oriented (UFO) controller. Flux amplitude (linear or squared) is provided as feedback to tune the UFO controller for operation in direct and indirect field orientation modes and enables smooth transitions from one mode to the other. 3 figs.

Control and design heat flux bending in thermal devices with transformation optics.

PubMed

Xu, Guoqiang; Zhang, Haochun; Jin, Yan; Li, Sen; Li, Yao

2017-04-17

We propose a fundamental latent function of control heat transfer and heat flux density vectors at random positions on thermal materials by applying transformation optics. The expressions for heat flux bending are obtained, and the factors influencing them are investigated in both 2D and 3D cloaking schemes. Under certain conditions, more than one degree of freedom of heat flux bending exists corresponding to the temperature gradients of the 3D domain. The heat flux path can be controlled in random space based on the geometrical azimuths, radial positions, and thermal conductivity ratios of the selected materials.

A scientific workflow framework for (13)C metabolic flux analysis.

PubMed

Dalman, Tolga; Wiechert, Wolfgang; Nöh, Katharina

2016-08-20

Metabolic flux analysis (MFA) with (13)C labeling data is a high-precision technique to quantify intracellular reaction rates (fluxes). One of the major challenges of (13)C MFA is the interactivity of the computational workflow according to which the fluxes are determined from the input data (metabolic network model, labeling data, and physiological rates). Here, the workflow assembly is inevitably determined by the scientist who has to consider interacting biological, experimental, and computational aspects. Decision-making is context dependent and requires expertise, rendering an automated evaluation process hardly possible. Here, we present a scientific workflow framework (SWF) for creating, executing, and controlling on demand (13)C MFA workflows. (13)C MFA-specific tools and libraries, such as the high-performance simulation toolbox 13CFLUX2, are wrapped as web services and thereby integrated into a service-oriented architecture. Besides workflow steering, the SWF features transparent provenance collection and enables full flexibility for ad hoc scripting solutions. To handle compute-intensive tasks, cloud computing is supported. We demonstrate how the challenges posed by (13)C MFA workflows can be solved with our approach on the basis of two proof-of-concept use cases. Copyright © 2015 Elsevier B.V. All rights reserved.

Regulation of yeast central metabolism by enzyme phosphorylation

PubMed Central

Oliveira, Ana Paula; Ludwig, Christina; Picotti, Paola; Kogadeeva, Maria; Aebersold, Ruedi; Sauer, Uwe

2012-01-01

As a frequent post-translational modification, protein phosphorylation regulates many cellular processes. Although several hundred phosphorylation sites have been mapped to metabolic enzymes in Saccharomyces cerevisiae, functionality was demonstrated for few of them. Here, we describe a novel approach to identify in vivo functionality of enzyme phosphorylation by combining flux analysis with proteomics and phosphoproteomics. Focusing on the network of 204 enzymes that constitute the yeast central carbon and amino-acid metabolism, we combined protein and phosphoprotein levels to identify 35 enzymes that change their degree of phosphorylation during growth under five conditions. Correlations between previously determined intracellular fluxes and phosphoprotein abundances provided first functional evidence for five novel phosphoregulated enzymes in this network, adding to nine known phosphoenzymes. For the pyruvate dehydrogenase complex E1 α subunit Pda1 and the newly identified phosphoregulated glycerol-3-phosphate dehydrogenase Gpd1 and phosphofructose-1-kinase complex β subunit Pfk2, we then validated functionality of specific phosphosites through absolute peptide quantification by targeted mass spectrometry, metabolomics and physiological flux analysis in mutants with genetically removed phosphosites. These results demonstrate the role of phosphorylation in controlling the metabolic flux realised by these three enzymes. PMID:23149688

Detecting the position of the moving-iron solenoid by non-displacement sensor based on parameter identification of flux linkage characteristics

NASA Astrophysics Data System (ADS)

Wang, Xuping; Quan, Long; Xiong, Guangyu

2013-11-01

Currently, most researches use signals, such as the coil current or voltage of solenoid, to identify parameters; typically, parameter identification method based on variation rate of coil current is applied for position estimation. The problem exists in these researches that the detected signals are prone to interference and difficult to obtain. This paper proposes a new method for detecting the core position by using flux characteristic quantity, which adds a new group of secondary winding to the coil of the ordinary switching electromagnet. On the basis of electromagnetic coupling theory analysis and simulation research of the magnetic field regarding the primary and secondary winding coils, and in accordance with the fact that under PWM control mode varying core position and operating current of windings produce different characteristic of flux increment of the secondary winding. The flux increment of the electromagnet winding can be obtained by conducting time domain integration for the induced voltage signal of the extracted secondary winding, and the core position from the two-dimensional fitting curve of the operating winding current and flux-linkage characteristic quantity of solenoid are calculated. The detecting and testing system of solenoid core position is developed based on the theoretical research. The testing results show that the flux characteristic quantity of switching electromagnet magnetic circuit is able to effectively show the core position and thus to accomplish the non-displacement transducer detection of the said core position of the switching electromagnet. This paper proposes a new method for detecting the core position by using flux characteristic quantity, which provides a new theory and method for switch solenoid to control the proportional valve.

An Overview of the Naval Research Laboratory Ocean Surface Flux (NFLUX) System

NASA Astrophysics Data System (ADS)

May, J. C.; Rowley, C. D.; Barron, C. N.

2016-02-01

The Naval Research Laboratory (NRL) ocean surface flux (NFLUX) system is an end-to-end data processing and assimilation system used to provide near-real time satellite-based surface heat flux fields over the global ocean. Swath-level air temperature (TA), specific humidity (QA), and wind speed (WS) estimates are produced using multiple polynomial regression algorithms with inputs from satellite sensor data records from the Special Sensor Microwave Imager/Sounder, the Advanced Microwave Sounding Unit-A, the Advanced Technology Microwave Sounder, and the Advanced Microwave Scanning Radiometer-2 sensors. Swath-level WS estimates are also retrieved from satellite environmental data records from WindSat, the MetOp scatterometers, and the Oceansat scatterometer. Swath-level solar and longwave radiative flux estimates are produced utilizing the Rapid Radiative Transfer Model for Global Circulation Models (RRTMG). Primary inputs to the RRTMG include temperature and moisture profiles and cloud liquid and ice water paths from the Microwave Integrated Retrieval System. All swath-level satellite estimates undergo an automated quality control process and are then assimilated with atmospheric model forecasts to produce 3-hourly gridded analysis fields. The turbulent heat flux fields, latent and sensible heat flux, are determined from the Coupled Ocean-Atmosphere Response Experiment (COARE) 3.0 bulk algorithms using inputs of TA, QA, WS, and a sea surface temperature model field. Quality-controlled in situ observations over a one-year time period from May 2013 through April 2014 form the reference for validating ocean surface state parameter and heat flux fields. The NFLUX fields are evaluated alongside the Navy's operational global atmospheric model, the Navy Global Environmental Model (NAVGEM). NFLUX is shown to have smaller biases and lower or similar root mean square errors compared to NAVGEM.

Analysis of Orbital Lifetime Prediction Parameters in Preparation for Post-Mission Disposal

NASA Astrophysics Data System (ADS)

Choi, Ha-Yeon; Kim, Hae-Dong; Seong, Jae-Dong

2015-12-01

Atmospheric drag force is an important source of perturbation of Low Earth Orbit (LEO) orbit satellites, and solar activity is a major factor for changes in atmospheric density. In particular, the orbital lifetime of a satellite varies with changes in solar activity, so care must be taken in predicting the remaining orbital lifetime during preparation for post-mission disposal. In this paper, the System Tool Kit (STK®) Long-term Orbit Propagator is used to analyze the changes in orbital lifetime predictions with respect to solar activity. In addition, the STK® Lifetime tool is used to analyze the change in orbital lifetime with respect to solar flux data generation, which is needed for the orbital lifetime calculation, and its control on the drag coefficient control. Analysis showed that the application of the most recent solar flux file within the Lifetime tool gives a predicted trend that is closest to the actual orbit. We also examine the effect of the drag coefficient, by performing a comparative analysis between varying and constant coefficients in terms of solar activity intensities.

Sampling with poling-based flux balance analysis: optimal versus sub-optimal flux space analysis of Actinobacillus succinogenes.

PubMed

Binns, Michael; de Atauri, Pedro; Vlysidis, Anestis; Cascante, Marta; Theodoropoulos, Constantinos

2015-02-18

Flux balance analysis is traditionally implemented to identify the maximum theoretical flux for some specified reaction and a single distribution of flux values for all the reactions present which achieve this maximum value. However it is well known that the uncertainty in reaction networks due to branches, cycles and experimental errors results in a large number of combinations of internal reaction fluxes which can achieve the same optimal flux value. In this work, we have modified the applied linear objective of flux balance analysis to include a poling penalty function, which pushes each new set of reaction fluxes away from previous solutions generated. Repeated poling-based flux balance analysis generates a sample of different solutions (a characteristic set), which represents all the possible functionality of the reaction network. Compared to existing sampling methods, for the purpose of generating a relatively "small" characteristic set, our new method is shown to obtain a higher coverage than competing methods under most conditions. The influence of the linear objective function on the sampling (the linear bias) constrains optimisation results to a subspace of optimal solutions all producing the same maximal fluxes. Visualisation of reaction fluxes plotted against each other in 2 dimensions with and without the linear bias indicates the existence of correlations between fluxes. This method of sampling is applied to the organism Actinobacillus succinogenes for the production of succinic acid from glycerol. A new method of sampling for the generation of different flux distributions (sets of individual fluxes satisfying constraints on the steady-state mass balances of intermediates) has been developed using a relatively simple modification of flux balance analysis to include a poling penalty function inside the resulting optimisation objective function. This new methodology can achieve a high coverage of the possible flux space and can be used with and without linear bias to show optimal versus sub-optimal solution spaces. Basic analysis of the Actinobacillus succinogenes system using sampling shows that in order to achieve the maximal succinic acid production CO₂ must be taken into the system. Solutions involving release of CO₂ all give sub-optimal succinic acid production.

The AmeriFlux data activity and data system: an evolving collection of data management techniques, tools, products and services

NASA Astrophysics Data System (ADS)

Boden, T. A.; Krassovski, M.; Yang, B.

2013-06-01

The Carbon Dioxide Information Analysis Center (CDIAC) at Oak Ridge National Laboratory (ORNL), USA has provided scientific data management support for the US Department of Energy and international climate change science since 1982. Among the many data archived and available from CDIAC are collections from long-term measurement projects. One current example is the AmeriFlux measurement network. AmeriFlux provides continuous measurements from forests, grasslands, wetlands, and croplands in North, Central, and South America and offers important insight about carbon cycling in terrestrial ecosystems. To successfully manage AmeriFlux data and support climate change research, CDIAC has designed flexible data systems using proven technologies and standards blended with new, evolving technologies and standards. The AmeriFlux data system, comprised primarily of a relational database, a PHP-based data interface and a FTP server, offers a broad suite of AmeriFlux data. The data interface allows users to query the AmeriFlux collection in a variety of ways and then subset, visualize and download the data. From the perspective of data stewardship, on the other hand, this system is designed for CDIAC to easily control database content, automate data movement, track data provenance, manage metadata content, and handle frequent additions and corrections. CDIAC and researchers in the flux community developed data submission guidelines to enhance the AmeriFlux data collection, enable automated data processing, and promote standardization across regional networks. Both continuous flux and meteorological data and irregular biological data collected at AmeriFlux sites are carefully scrutinized by CDIAC using established quality-control algorithms before the data are ingested into the AmeriFlux data system. Other tasks at CDIAC include reformatting and standardizing the diverse and heterogeneous datasets received from individual sites into a uniform and consistent network database, generating high-level derived products to meet the current demands from a broad user group, and developing new products in anticipation of future needs. In this paper, we share our approaches to meet the challenges of standardizing, archiving and delivering quality, well-documented AmeriFlux data worldwide to benefit others with similar challenges of handling diverse climate change data, to further heighten awareness and use of an outstanding ecological data resource, and to highlight expanded software engineering applications being used for climate change measurement data.

The AmeriFlux data activity and data system: an evolving collection of data management techniques, tools, products and services

NASA Astrophysics Data System (ADS)

Boden, T. A.; Krassovski, M.; Yang, B.

2013-02-01

The Carbon Dioxide Information Analysis Center (CDIAC) at Oak Ridge National Laboratory (ORNL), USA has provided scientific data management support for the US Department of Energy and international climate change science since 1982. Among the many data archived and available from CDIAC are collections from long-term measurement projects. One current example is the AmeriFlux measurement network. AmeriFlux provides continuous measurements from forests, grasslands, wetlands, and croplands in North, Central, and South America and offers important insight about carbon cycling in terrestrial ecosystems. To successfully manage AmeriFlux data and support climate change research, CDIAC has designed flexible data systems using proven technologies and standards blended with new, evolving technologies and standards. The AmeriFlux data system, comprised primarily of a relational database, a PHP based data-interface and a FTP server, offers a broad suite of AmeriFlux data. The data interface allows users to query the AmeriFlux collection in a variety of ways and then subset, visualize and download the data. From the perspective of data stewardship, on the other hand, this system is designed for CDIAC to easily control database content, automate data movement, track data provenance, manage metadata content, and handle frequent additions and corrections. CDIAC and researchers in the flux community developed data submission guidelines to enhance the AmeriFlux data collection, enable automated data processing, and promote standardization across regional networks. Both continuous flux and meteorological data and irregular biological data collected at AmeriFlux sites are carefully scrutinized by CDIAC using established quality-control algorithms before the data are ingested into the AmeriFlux data system. Other tasks at CDIAC include reformatting and standardizing the diverse and heterogeneous datasets received from individual sites into a uniform and consistent network database, generating high-level derived products to meet the current demands from a broad user group, and developing new products in anticipation of future needs. In this paper, we share our approaches to meet the challenges of standardizing, archiving and delivering quality, well-documented AmeriFlux data worldwide to benefit others with similar challenges of handling diverse climate change data, to further heighten awareness and use of an outstanding ecological data resource, and to highlight expanded software engineering applications being used for climate change measurement data.

Fast flux module detection using matroid theory.

PubMed

Reimers, Arne C; Bruggeman, Frank J; Olivier, Brett G; Stougie, Leen

2015-05-01

Flux balance analysis (FBA) is one of the most often applied methods on genome-scale metabolic networks. Although FBA uniquely determines the optimal yield, the pathway that achieves this is usually not unique. The analysis of the optimal-yield flux space has been an open challenge. Flux variability analysis is only capturing some properties of the flux space, while elementary mode analysis is intractable due to the enormous number of elementary modes. However, it has been found by Kelk et al. (2012) that the space of optimal-yield fluxes decomposes into flux modules. These decompositions allow a much easier but still comprehensive analysis of the optimal-yield flux space. Using the mathematical definition of module introduced by Müller and Bockmayr (2013b), we discovered useful connections to matroid theory, through which efficient algorithms enable us to compute the decomposition into modules in a few seconds for genome-scale networks. Using that every module can be represented by one reaction that represents its function, in this article, we also present a method that uses this decomposition to visualize the interplay of modules. We expect the new method to replace flux variability analysis in the pipelines for metabolic networks.

Feedback system for divertor impurity seeding based on real-time measurements of surface heat flux in the Alcator C-Mod tokamak

NASA Astrophysics Data System (ADS)

Brunner, D.; Burke, W.; Kuang, A. Q.; LaBombard, B.; Lipschultz, B.; Wolfe, S.

2016-02-01

Mitigation of the intense heat flux to the divertor is one of the outstanding problems in fusion energy. One technique that has shown promise is impurity seeding, i.e., the injection of low-Z gaseous impurities (typically N2 or Ne) to radiate and dissipate the power before it arrives to the divertor target plate. To this end, the Alcator C-Mod team has created a first-of-its-kind feedback system to control the injection of seed gas based on real-time surface heat flux measurements. Surface thermocouples provide real-time measurements of the surface temperature response to the plasma heat flux. The surface temperature measurements are inputted into an analog computer that "solves" the 1-D heat transport equation to deliver accurate, real-time signals of the surface heat flux. The surface heat flux signals are sent to the C-Mod digital plasma control system, which uses a proportional-integral-derivative (PID) algorithm to control the duty cycle demand to a pulse width modulated piezo valve, which in turn controls the injection of gas into the private flux region of the C-Mod divertor. This paper presents the design and implementation of this new feedback system as well as initial results using it to control divertor heat flux.

Feedback system for divertor impurity seeding based on real-time measurements of surface heat flux in the Alcator C-Mod tokamak.

PubMed

Brunner, D; Burke, W; Kuang, A Q; LaBombard, B; Lipschultz, B; Wolfe, S

2016-02-01

Mitigation of the intense heat flux to the divertor is one of the outstanding problems in fusion energy. One technique that has shown promise is impurity seeding, i.e., the injection of low-Z gaseous impurities (typically N2 or Ne) to radiate and dissipate the power before it arrives to the divertor target plate. To this end, the Alcator C-Mod team has created a first-of-its-kind feedback system to control the injection of seed gas based on real-time surface heat flux measurements. Surface thermocouples provide real-time measurements of the surface temperature response to the plasma heat flux. The surface temperature measurements are inputted into an analog computer that "solves" the 1-D heat transport equation to deliver accurate, real-time signals of the surface heat flux. The surface heat flux signals are sent to the C-Mod digital plasma control system, which uses a proportional-integral-derivative (PID) algorithm to control the duty cycle demand to a pulse width modulated piezo valve, which in turn controls the injection of gas into the private flux region of the C-Mod divertor. This paper presents the design and implementation of this new feedback system as well as initial results using it to control divertor heat flux.

Sensitivity analysis of non-cohesive sediment transport formulae

NASA Astrophysics Data System (ADS)

Pinto, Lígia; Fortunato, André B.; Freire, Paula

2006-10-01

Sand transport models are often based on semi-empirical equilibrium transport formulae that relate sediment fluxes to physical properties such as velocity, depth and characteristic sediment grain sizes. In engineering applications, errors in these physical properties affect the accuracy of the sediment fluxes. The present analysis quantifies error propagation from the input physical properties to the sediment fluxes, determines which ones control the final errors, and provides insight into the relative strengths, weaknesses and limitations of four total load formulae (Ackers and White, Engelund and Hansen, van Rijn, and Karim and Kennedy) and one bed load formulation (van Rijn). The various sources of uncertainty are first investigated individually, in order to pinpoint the key physical properties that control the errors. Since the strong non-linearity of most sand transport formulae precludes analytical approaches, a Monte Carlo method is validated and used in the analysis. Results show that the accuracy in total sediment transport evaluations is mainly determined by errors in the current velocity and in the sediment median grain size. For the bed load transport using the van Rijn formula, errors in the current velocity alone control the final accuracy. In a final set of tests, all physical properties are allowed to vary simultaneously in order to analyze the combined effect of errors. The combined effect of errors in all the physical properties is then compared to an estimate of the errors due to the intrinsic limitations of the formulae. Results show that errors in the physical properties can be dominant for typical uncertainties associated with these properties, particularly for small depths. A comparison between the various formulae reveals that the van Rijn formula is more sensitive to basic physical properties. Hence, it should only be used when physical properties are known with precision.

DOE Office of Scientific and Technical Information (OSTI.GOV)

Hay, J.; Schwender, J.

Plant oils are an important renewable resource, and seed oil content is a key agronomical trait that is in part controlled by the metabolic processes within developing seeds. A large-scale model of cellular metabolism in developing embryos of Brassica napus (bna572) was used to predict biomass formation and to analyze metabolic steady states by flux variability analysis under different physiological conditions. Predicted flux patterns are highly correlated with results from prior 13C metabolic flux analysis of B. napus developing embryos. Minor differences from the experimental results arose because bna572 always selected only one sugar and one nitrogen source from themore » available alternatives, and failed to predict the use of the oxidative pentose phosphate pathway. Flux variability, indicative of alternative optimal solutions, revealed alternative pathways that can provide pyruvate and NADPH to plastidic fatty acid synthesis. The nutritional values of different medium substrates were compared based on the overall carbon conversion efficiency (CCE) for the biosynthesis of biomass. Although bna572 has a functional nitrogen assimilation pathway via glutamate synthase, the simulations predict an unexpected role of glycine decarboxylase operating in the direction of NH4+ assimilation. Analysis of the light-dependent improvement of carbon economy predicted two metabolic phases. At very low light levels small reductions in CO2 efflux can be attributed to enzymes of the tricarboxylic acid cycle (oxoglutarate dehydrogenase, isocitrate dehydrogenase) and glycine decarboxylase. At higher light levels relevant to the 13C flux studies, ribulose-1,5-bisphosphate carboxylase activity is predicted to account fully for the light-dependent changes in carbon balance.« less

An Analysis of Inter-annual Variability and Uncertainty of Continental Surface Heat Fluxes

NASA Astrophysics Data System (ADS)

Huang, S. Y.; Deng, Y.; Wang, J.

2016-12-01

The inter-annual variability and the corresponding uncertainty of land surface heat fluxes during the first decade of the 21st century are re-evaluated at continental scale based on the heat fluxes estimated by the maximum entropy production (MEP) model. The MEP model predicted heat fluxes are constrained by surface radiation fluxes, automatically satisfy surface energy balance, and are independent of temperature/moisture gradient, wind speed, and roughness lengths. The surface radiation fluxes and temperature data from Clouds and the Earth's Radiant Energy System and the surface specific humidity data from Modern-Era Retrospective analysis for Research and Applications were used to reproduce the global surface heat fluxes with land-cover data from the NASA Energy and Water cycle Study (NEWS). Our analysis shows that the annual means of continental latent heat fluxes have increasing trends associated with increasing trends in surface net radiative fluxes. The sensible heat fluxes also have increasing trends over most continents except for South America. Ground heat fluxes have little trends. The continental-scale analysis of the MEP fluxes are compared with other existing global surface fluxes data products and the implications of the results for inter-annual to decadal variability of regional surface energy budget are discussed.

Ephemerality of discrete methane vents in lake sediments

USGS Publications Warehouse

Scandella, Benjamin P.; Pillsbury, Liam; Weber, Thomas; Ruppel, Carolyn D.; Hemond, Harold F.; Juanes, Ruben

2016-01-01

Methane is a potent greenhouse gas whose emission from sediments in inland waters and shallow oceans may both contribute to global warming and be exacerbated by it. The fraction of methane emitted by sediments that bypasses dissolution in the water column and reaches the atmosphere as bubbles depends on the mode and spatiotemporal characteristics of venting from the sediments. Earlier studies have concluded that hot spots—persistent, high-flux vents—dominate the regional ebullitive flux from submerged sediments. Here the spatial structure, persistence, and variability in the intensity of methane venting are analyzed using a high-resolution multibeam sonar record acquired at the bottom of a lake during multiple deployments over a 9 month period. We confirm that ebullition is strongly episodic, with distinct regimes of high flux and low flux largely controlled by changes in hydrostatic pressure. Our analysis shows that the spatial pattern of ebullition becomes homogeneous at the sonar's resolution over time scales of hours (for high-flux periods) or days (for low-flux periods), demonstrating that vents are ephemeral rather than persistent, and suggesting that long-term, lake-wide ebullition dynamics may be modeled without resolving the fine-scale spatial structure of venting.

Fluxomics - connecting 'omics analysis and phenotypes.

PubMed

Winter, Gal; Krömer, Jens O

2013-07-01

In our modern 'omics era, metabolic flux analysis (fluxomics) represents the physiological counterpart of its siblings transcriptomics, proteomics and metabolomics. Fluxomics integrates in vivo measurements of metabolic fluxes with stoichiometric network models to allow the determination of absolute flux through large networks of the central carbon metabolism. There are many approaches to implement fluxomics including flux balance analysis (FBA), (13) C fluxomics and (13) C-constrained FBA as well as many experimental settings for flux measurement including dynamic, stationary and semi-stationary. Here we outline the principles of the different approaches and their relative advantages. We demonstrate the unique contribution of flux analysis for phenotype elucidation using a thoroughly studied metabolic reaction as a case study, the microbial aerobic/anaerobic shift, highlighting the importance of flux analysis as a single layer of data as well as interlaced in multi-omics studies. © 2012 John Wiley & Sons Ltd and Society for Applied Microbiology.

DOE Office of Scientific and Technical Information (OSTI.GOV)

Law, B E

Research involves analysis and field direction of AmeriFlux operations, and the PI provides scientific leadership of the AmeriFlux network. Activities include the coordination and quality assurance of measurements across AmeriFlux network sites, synthesis of results across the network, organizing and supporting the annual Science Team Meeting, and communicating AmeriFlux results to the scientific community and other users. Objectives of measurement research include (i) coordination of flux and biometric measurement protocols (ii) timely data delivery to the Carbon Dioxide Information and Analysis Center (CDIAC); and (iii) assurance of data quality of flux and ecosystem measurements contributed by AmeriFlux sites. Objectives ofmore » integration and synthesis activities include (i) integration of site data into network-wide synthesis products; and (ii) participation in the analysis, modeling and interpretation of network data products. Communications objectives include (i) organizing an annual meeting of AmeriFlux investigators for reporting annual flux measurements and exchanging scientific information on ecosystem carbon budgets; (ii) developing focused topics for analysis and publication; and (iii) developing data reporting protocols in support of AmeriFlux network goals.« less

Nitrous oxide emissions from soils in southern Poland under various tillage conditions.

NASA Astrophysics Data System (ADS)

Galkowski, Michal; Zieba, Damian; Ciaciek, Klaudia; Necki, Jaroslaw; Rozanski, Kazimierz

2015-04-01

Due to close ties of nitrogen cycle with the production of food, appropriate mitigation policies need to be considered in order to reduce the impact of reactive N compounds on both human health and the environment. These policies strongly rely on quantitative information with respect to fluxes of reactive nitrogen compounds to the atmosphere and mechanisms controlling those fluxes on a various time and space scales. One of these compounds is nitrous oxide - currently the most important human-emitted ozone depleting substance and one of the most important greenhouse gases. In this study, which is a part of broader, regional (Southern Poland) analysis of nitrous oxide circulation, we present the results of field measurements performed at the Institute of Plant Acclimatization and Husbandry (ZDHAR) in Grodkowice (Malopolska). Several representative sites have been selected for measurements of N2O emissions during two campaigns - in spring (March) and autumn (October) 2014. The investigated crops were chosen to represent the regional agriculture and included wheat, canola and maize under various tillage conditions (with and without tilling), as well as an uncultivated grassland as a control site. The static chamber method was chosen to quantify soil-atmosphere N2O fluxes. Chamber enclosures have been performed every 3-5 days, depending on the conditions prevailing at the sites during the intermediate periods (e.g. rainfall or fertilization events). From each enclosure, five 50-ml air samples have been collected for subsequent analysis of nitrous oxide concentrations. Well-established gas chromatography methods, with a precision of a single N2O measurement better than 0.5 ppb were employed. The measured concentrations were then used in a linear emission model to calculate N2O fluxes. Other trace gases (CH4, CO2, SF6) were also measured in each sample for quality control purposes. Result for both campaigns show large variability of N2O emissions, with maximum fluxes in the order of 40 kg N-N2O ha-1 yr-1, driven mainly by availability of nitrogen in soil (fertilization events) and water (measurements of soil water content were performed and analysed). For fertilized sites, largest emissions value were observed several days after the rainfall events, while the control site remained stable throughout the campaign period and not exceeding 0.5 kg N-N2O ha-1 yr-1.

Soil Dissolved Organic Carbon Fluxes are Controlled by both Precipitation and Longer-Term Climate Effects on Boreal Forest Ecosystems

NASA Astrophysics Data System (ADS)

Hotchkiss, E. R.; Ziegler, S. E.; Edwards, K. A.; Bowering, K.

2017-12-01

Water acts as a control on the cycling of organic carbon (OC). Forest productivity responses to climate change are linked to water availability while water residence time is a major control on OC loss in aquatic ecosystems. However, controls on the export of terrestrial OC to the aquatic environment remains poorly understood. Transport of dissolved OC (DOC) through soils both vertically to deeper soil horizons and into aquatic systems is a key flux of terrestrial OC, but the climate drivers controlling OC mobilized from soils is poorly understood. We installed zero-tension lysimeters across similar balsam fir forest sites within three regions that span a MAT gradient of 5.2˚C and MAP of 1050-1500 mm. Using soil water collected over all seasons for four years we tested whether a warmer and wetter climate promotes greater DOC fluxes in ecosystems experiencing relatively high precipitation. Variability within and between years was compared to that observed across climates to test the sensitivity of this flux to shorter relative to longer-term climate effects on this flux. The warmest and wettest southern site exhibited the greatest annual DOC flux (25 to 28 g C m-2 y-1) in contrast to the most northern site (8 to 10 g C m -2 y-1). This flux represented 10% of litterfall C inputs across sites and surpassed the DOC export from associated forested headwater streams (1 to 16 g C m-2 y-1) suggesting terrestrial to aquatic interface processing. Historical climate and increased soil C inputs explain the greater DOC flux in the southern region. Even in years with comparable annual precipitation among regions the DOC flux differed by climate region. Furthermore, neither quantity nor form of precipitation could explain inter-annual differences in DOC flux within each region. Region specific relationships between precipitation and soil water flux instead suggest historical climate effects may impact soil water transport efficiency thereby controlling the regional variation in the DOC flux. As these forests are exposed to a warmer and wetter climate, DOC transport from organic soils will likely increase. Although precipitation changes will impact this C flux, longer-term climate effects impacting soil inputs, composition and structure of these forests will play an important role in controlling DOC transport in a warmer and wetter future.

Integrated analysis of transcriptome and lipid profiling reveals the co-influences of inositol-choline and Snf1 in controlling lipid biosynthesis in yeast.

PubMed

Chumnanpuen, Pramote; Zhang, Jie; Nookaew, Intawat; Nielsen, Jens

2012-07-01

In the yeast Saccharomyces cerevisiae many genes involved in lipid biosynthesis are transcriptionally controlled by inositol-choline and the protein kinase Snf1. Here we undertook a global study on how inositol-choline and Snf1 interact in controlling lipid metabolism in yeast. Using both a reference strain (CEN.PK113-7D) and a snf1Δ strain cultured at different nutrient limitations (carbon and nitrogen), at a fixed specific growth rate of 0.1 h(-1), and at different inositol choline concentrations, we quantified the expression of genes involved in lipid biosynthesis and the fluxes towards the different lipid components. Through integrated analysis of the transcriptome, the lipid profiling and the fluxome, it was possible to obtain a high quality, large-scale dataset that could be used to identify correlations and associations between the different components. At the transcription level, Snf1 and inositol-choline interact either directly through the main phospholipid-involving transcription factors (i.e. Ino2, Ino4, and Opi1) or through other transcription factors e.g. Gis1, Mga2, and Hac1. However, there seems to be flux regulation at the enzyme levels of several lipid involving enzymes. The analysis showed the strength of using both transcriptome and lipid profiling analysis for mapping the co-influence of inositol-choline and Snf1 on phospholipid metabolism.

From elementary flux modes to elementary flux vectors: Metabolic pathway analysis with arbitrary linear flux constraints.

PubMed

Klamt, Steffen; Regensburger, Georg; Gerstl, Matthias P; Jungreuthmayer, Christian; Schuster, Stefan; Mahadevan, Radhakrishnan; Zanghellini, Jürgen; Müller, Stefan

2017-04-01

Elementary flux modes (EFMs) emerged as a formal concept to describe metabolic pathways and have become an established tool for constraint-based modeling and metabolic network analysis. EFMs are characteristic (support-minimal) vectors of the flux cone that contains all feasible steady-state flux vectors of a given metabolic network. EFMs account for (homogeneous) linear constraints arising from reaction irreversibilities and the assumption of steady state; however, other (inhomogeneous) linear constraints, such as minimal and maximal reaction rates frequently used by other constraint-based techniques (such as flux balance analysis [FBA]), cannot be directly integrated. These additional constraints further restrict the space of feasible flux vectors and turn the flux cone into a general flux polyhedron in which the concept of EFMs is not directly applicable anymore. For this reason, there has been a conceptual gap between EFM-based (pathway) analysis methods and linear optimization (FBA) techniques, as they operate on different geometric objects. One approach to overcome these limitations was proposed ten years ago and is based on the concept of elementary flux vectors (EFVs). Only recently has the community started to recognize the potential of EFVs for metabolic network analysis. In fact, EFVs exactly represent the conceptual development required to generalize the idea of EFMs from flux cones to flux polyhedra. This work aims to present a concise theoretical and practical introduction to EFVs that is accessible to a broad audience. We highlight the close relationship between EFMs and EFVs and demonstrate that almost all applications of EFMs (in flux cones) are possible for EFVs (in flux polyhedra) as well. In fact, certain properties can only be studied with EFVs. Thus, we conclude that EFVs provide a powerful and unifying framework for constraint-based modeling of metabolic networks.

From elementary flux modes to elementary flux vectors: Metabolic pathway analysis with arbitrary linear flux constraints

PubMed Central

Klamt, Steffen; Gerstl, Matthias P.; Jungreuthmayer, Christian; Mahadevan, Radhakrishnan; Müller, Stefan

2017-01-01

Elementary flux modes (EFMs) emerged as a formal concept to describe metabolic pathways and have become an established tool for constraint-based modeling and metabolic network analysis. EFMs are characteristic (support-minimal) vectors of the flux cone that contains all feasible steady-state flux vectors of a given metabolic network. EFMs account for (homogeneous) linear constraints arising from reaction irreversibilities and the assumption of steady state; however, other (inhomogeneous) linear constraints, such as minimal and maximal reaction rates frequently used by other constraint-based techniques (such as flux balance analysis [FBA]), cannot be directly integrated. These additional constraints further restrict the space of feasible flux vectors and turn the flux cone into a general flux polyhedron in which the concept of EFMs is not directly applicable anymore. For this reason, there has been a conceptual gap between EFM-based (pathway) analysis methods and linear optimization (FBA) techniques, as they operate on different geometric objects. One approach to overcome these limitations was proposed ten years ago and is based on the concept of elementary flux vectors (EFVs). Only recently has the community started to recognize the potential of EFVs for metabolic network analysis. In fact, EFVs exactly represent the conceptual development required to generalize the idea of EFMs from flux cones to flux polyhedra. This work aims to present a concise theoretical and practical introduction to EFVs that is accessible to a broad audience. We highlight the close relationship between EFMs and EFVs and demonstrate that almost all applications of EFMs (in flux cones) are possible for EFVs (in flux polyhedra) as well. In fact, certain properties can only be studied with EFVs. Thus, we conclude that EFVs provide a powerful and unifying framework for constraint-based modeling of metabolic networks. PMID:28406903

Thermal sensors to control polymer forming. Challenge and solutions

NASA Astrophysics Data System (ADS)

Lemeunier, F.; Boyard, N.; Sarda, A.; Plot, C.; Lefèvre, N.; Petit, I.; Colomines, G.; Allanic, N.; Bailleul, J. L.

2017-10-01

Many thermal sensors are already used, for many years, to better understand and control material forming processes, especially polymer processing. Due to technical constraints (high pressure, sealing, sensor dimensions…) the thermal measurement is often performed in the tool or close its surface. Thus, it only gives partial and disturbed information. Having reliable information about the heat flux exchanges between the tool and the material during the process would be very helpful to improve the control of the process and to favor the development of new materials. In this work, we present several sensors developed in labs to study the molding steps in forming processes. The analysis of the obtained thermal measurements (temperature, heat flux) shows the required sensitivity threshold of sensitivity of thermal sensors to be able to detect on-line the rate of thermal reaction. Based on these data, we will present new sensor designs which have been patented.

13C tracer experiments and metabolite balancing for metabolic flux analysis: comparing two approaches

PubMed

Schmidt; Marx; de Graaf AA; Wiechert; Sahm; Nielsen; Villadsen

1998-04-05

Conventional metabolic flux analysis uses the information gained from determination of measurable fluxes and a steady-state assumption for intracellular metabolites to calculate the metabolic fluxes in a given metabolic network. The determination of intracellular fluxes depends heavily on the correctness of the assumed stoichiometry including the presence of all reactions with a noticeable impact on the model metabolite balances. Determination of fluxes in complex metabolic networks often requires the inclusion of NADH and NADPH balances, which are subject to controversial debate. Transhydrogenation reactions that transfer reduction equivalents from NADH to NADPH or vice versa can usually not be included in the stoichiometric model, because they result in singularities in the stoichiometric matrix. However, it is the NADPH balance that, to a large extent, determines the calculated flux through the pentose phosphate pathway. Hence, wrong assumptions on the presence or activity of transhydrogenation reactions will result in wrong estimations of the intracellular flux distribution. Using 13C tracer experiments and NMR analysis, flux analysis can be performed on the basis of only well established stoichiometric equations and measurements of the labeling state of intracellular metabolites. Neither NADH/NADPH balancing nor assumptions on energy yields need to be included to determine the intracellular fluxes. Because metabolite balancing methods and the use of 13C labeling measurements are two different approaches to the determination of intracellular fluxes, both methods can be used to verify each other or to discuss the origin and significance of deviations in the results. Flux analysis based entirely on metabolite balancing and flux analysis, including labeling information, have been performed independently for a wild-type strain of Aspergillus oryzae producing alpha-amylase. Two different nitrogen sources, NH4+ and NO3-, have been used to investigate the influence of the NADPH requirements on the intracellular flux distribution. The two different approaches to the calculation of fluxes are compared and deviations in the results are discussed. Copyright 1998 John Wiley & Sons, Inc.

Power flow control using distributed saturable reactors

DOEpatents

Dimitrovski, Aleksandar D.

2016-02-13

A magnetic amplifier includes a saturable core having a plurality of legs. Control windings wound around separate legs are spaced apart from each other and connected in series in an anti-symmetric relation. The control windings are configured in such a way that a biasing magnetic flux arising from a control current flowing through one of the plurality of control windings is substantially equal to the biasing magnetic flux flowing into a second of the plurality of control windings. The flow of the control current through each of the plurality of control windings changes the reactance of the saturable core reactor by driving those portions of the saturable core that convey the biasing magnetic flux in the saturable core into saturation. The phasing of the control winding limits a voltage induced in the plurality of control windings caused by a magnetic flux passing around a portion of the saturable core.

Role of plant-generated water vapor and VOC fluxes in shoot chamber measurements of O3 and NOx

NASA Astrophysics Data System (ADS)

Joensuu, J.; Altimir, N.; Raivonen, M.; Kolari, P.; Keronen, P.; Vesala, T.; Bäck, J.; Hari, P.; Järvinen, E.; Nikinmaa, E.

2012-04-01

One of the processes underlying the atmospheric balance of O3 and NOx is their interaction with vegetation. Both are removed, absorbed, and NOx potentially also emitted by foliage. Uncertainties remain on relevant factors controlling O3 and NOx interactions with foliage as well as on including them in large-scale models. One reason for the uncertainty is that chamber measurements of O3 and NOx fluxes are complicated. These reactive gases are adsorbed and desorbed on the chamber walls, depending on the conditions (i.e. humidity). These artefact gas fluxes (chamber blank) must also be quantified and taken into account in the data analysis. Their importance increases when measuring in clean air, where the fluxes are generally small. At near-zero concentrations, the fluxes may not pass the detection limit of the instrumentation, which usually means it is not possible to separate the plant-related fluxes from the chamber blank. The long-term field measurements at the SMEAR II station in Hyytiälä, Southern Finland, have provided valuable insights into O3 and NOx exchange (i.e. Raivonen & al. 2009, Altimir & al. 2006). This project builds up on the expertise and conclusions from these works. The aim of this study was to improve the reliability of the measuring system by checking the role of potential measuring artefact(s). A live shoot, enclosed in a chamber, creates a water vapor in the chamber flux by transpiring. There are also biogenic VOC emissions from the shoot. In principle, these may affect the reactions of O3 and possibly NOx in the chamber. The potential interference of these fluxes created naturally during chamber closure is a main concern. Their effect on the O3 and NOx flux measurements has been tested with field calibrations in 2010-2011. In these calibrations, a controlled water vapor /VOC flux was fed into an empty shoot measurement chamber, and the H2O, CO2, O3 and NOx fluxes created in the chamber were measured. The created water vapor flux pattern was modified to either simulate shoot transpiration or to break the close connection of natural daily variation in transpiration, radiation and temperature. We will present results of this experiment. The project is funded by the Maj and Tor Nessling Foundation and the Ella and Georg Ehnrooth Foundation.

OpenMebius: an open source software for isotopically nonstationary 13C-based metabolic flux analysis.

PubMed

Kajihata, Shuichi; Furusawa, Chikara; Matsuda, Fumio; Shimizu, Hiroshi

2014-01-01

The in vivo measurement of metabolic flux by (13)C-based metabolic flux analysis ((13)C-MFA) provides valuable information regarding cell physiology. Bioinformatics tools have been developed to estimate metabolic flux distributions from the results of tracer isotopic labeling experiments using a (13)C-labeled carbon source. Metabolic flux is determined by nonlinear fitting of a metabolic model to the isotopic labeling enrichment of intracellular metabolites measured by mass spectrometry. Whereas (13)C-MFA is conventionally performed under isotopically constant conditions, isotopically nonstationary (13)C metabolic flux analysis (INST-(13)C-MFA) has recently been developed for flux analysis of cells with photosynthetic activity and cells at a quasi-steady metabolic state (e.g., primary cells or microorganisms under stationary phase). Here, the development of a novel open source software for INST-(13)C-MFA on the Windows platform is reported. OpenMebius (Open source software for Metabolic flux analysis) provides the function of autogenerating metabolic models for simulating isotopic labeling enrichment from a user-defined configuration worksheet. Analysis using simulated data demonstrated the applicability of OpenMebius for INST-(13)C-MFA. Confidence intervals determined by INST-(13)C-MFA were less than those determined by conventional methods, indicating the potential of INST-(13)C-MFA for precise metabolic flux analysis. OpenMebius is the open source software for the general application of INST-(13)C-MFA.

Contribution of Glucose Transport to the Control of the Glycolytic Flux in Trypanosoma brucei

NASA Astrophysics Data System (ADS)

Bakker, Barbara M.; Walsh, Michael C.; Ter Kuile, Benno H.; Mensonides, Femke I. C.; Michels, Paul A. M.; Opperdoes, Fred R.; Westerhoff, Hans V.

1999-08-01

The rate of glucose transport across the plasma membrane of the bloodstream form of Trypanosoma brucei was modulated by titration of the hexose transporter with the inhibitor phloretin, and the effect on the glycolytic flux was measured. A rapid glucose uptake assay was developed to measure the transport activity independently of the glycolytic flux. Phloretin proved a competitive inhibitor. When the effect of the intracellular glucose concentration on the inhibition was taken into account, the flux control coefficient of the glucose transporter was between 0.3 and 0.5 at 5 mM glucose. Because the flux control coefficients of all steps in a metabolic pathway sum to 1, this result proves that glucose transport is not the rate-limiting step of trypanosome glycolysis. Under physiological conditions, transport shares the control with other steps. At glucose concentrations much lower than physiological, the glucose carrier assumed all control, in close agreement with model predictions.

Energy exchanges in a Central Business District - Interpretation of Eddy Covariance and radiation flux measurements (London UK)

NASA Astrophysics Data System (ADS)

Kotthaus, S.; Grimmond, S.

2013-12-01

Global urbanisation brings increasingly dense and complex urban structures. To manage cities sustainably and smartly, currently and into the future under changing climates, urban climate research needs to advance in areas such as Central Business Districts (CBD) where human interactions with the environment are particularly concentrated. Measurement and modelling approaches may be pushed to their limits in dense urban settings, but if urban climate research is to contribute to the challenges of real cities those limits have to be addressed. The climate of cities is strongly governed by surface-atmosphere exchanges of energy, moisture and momentum. Observations of the relevant fluxes provide important information for improvement and evaluation of modelling approaches. Due to the CBD's heterogeneity, a very careful analysis of observations is required to understand the relevant processes. Current approaches used to interpret observations and set them in a wider context may need to be adapted for use in these more complex areas. Here, we present long-term observations of the radiation balance components and turbulent fluxes of latent heat, sensible heat and momentum in the city centre of London. This is one of the first measurement studies in a CBD covering multiple years with analysis at temporal scales from days to seasons. Data gathered at two sites in close vicinity, but with different measurement heights, are analysed to investigate the influence of source area characteristics on long-term radiation and turbulent fluxes. Challenges of source area modelling and the critical aspect of siting in such a complex environment are considered. Outgoing long- and short-wave radiation are impacted by the anisotropic nature of the urban surface and the high reflectance materials increasingly being used as building materials. Results highlight the need to consider the source area of radiometers in terms of diffuse and direct irradiance. Sensible heat fluxes (QH) are positive all year round, even at night. QH systematically exceeds input from net all-wave radiation (Q*), probably sustained by a both storage and anthropogenic heat fluxes (QF). Model estimates suggest QF can exceed the Q* nearly all year round. The positive QH inhibits stable conditions, but the stability classification is determined predominantly by the pattern of friction velocity over the rough urban surface. Turbulent latent heat flux variations are controlled (beyond the available energy) by rainfall due to the small vegetation cover. The Bowen ratio is mostly larger than one. Analysis of the eddy covariance footprint surface controls for the different land cover types by flow patterns for measurements at the two heights suggests the spatial variations of the sensible heat flux observed are partly related to changes in surface roughness, even at the local scale. Where the source areas are most homogeneous, flow conditions are vertically consistent - even if initial morphometric parameters suggested the measurements may be below the blending height. Turbulence statistics and momentum flux patterns prove useful for the interpretation of turbulent heat exchanges observed.

13C-based metabolic flux analysis: fundamentals and practice.

PubMed

Yang, Tae Hoon

2013-01-01

Isotope-based metabolic flux analysis is one of the emerging technologies applied to system level metabolic phenotype characterization in metabolic engineering. Among the developed approaches, (13)C-based metabolic flux analysis has been established as a standard tool and has been widely applied to quantitative pathway characterization of diverse biological systems. To implement (13)C-based metabolic flux analysis in practice, comprehending the underlying mathematical and computational modeling fundamentals is of importance along with carefully conducted experiments and analytical measurements. Such knowledge is also crucial when designing (13)C-labeling experiments and properly acquiring key data sets essential for in vivo flux analysis implementation. In this regard, the modeling fundamentals of (13)C-labeling systems and analytical data processing are the main topics we will deal with in this chapter. Along with this, the relevant numerical optimization techniques are addressed to help implementation of the entire computational procedures aiming at (13)C-based metabolic flux analysis in vivo.

Environmental controls on the distribution of living (stained) benthic foraminifera on the continental slope in the Campos Basin area (SW Atlantic)

NASA Astrophysics Data System (ADS)

Yamashita, Cintia; Mello e Sousa, Silvia Helena de; Vicente, Thaisa Marques; Martins, Maria Virgínia; Nagai, Renata Hanae; Frontalini, Fabrizio; Godoi, Sueli Susana; Napolitano, Dante; Burone, Letícia; Carreira, Renato; Figueira, Rubens Cesar Lopes; Taniguchi, Nancy Kazumi; Rezende, Carlos Eduardo de; Koutsoukos, Eduardo Apostolos Machado

2018-05-01

Living (stained) benthic foraminifera from deep-sea stations in the Campos Basin, southeastern Brazilian continental margin, were investigated to understand their distribution patterns and ecology, as well as the oceanographic processes that control foraminiferal distribution. Sediments were collected from 1050 m to 1950 m of water depth during the austral winter of 2003, below the Intermediate Western Boundary Current (IWBC) and the Deep Water Boundary Current (DWBC). Based on statistical analysis, vertical flux of particulate organic matter and the grain size of sediment seem to be the main factors controlling the spatial distribution of benthic foraminifera. The middle slope (1050 m deep) is characterized by relatively high foraminiferal density and a predominance of phytodetritus-feeding foraminifera such as Epistominella exigua and Globocassidulina subglobosa. The occurrence of these species seems to reflect the Brazil Current System (BCS). The above-mentioned currents are associated with the relatively high vertical flux of particulate organic matter and the prevalence of sandy sediments, respectively. The lower slope (between 1350 and 1950 m of water depth) is marked by low foraminiferal density and assemblages composed of Bolivina spp. and Brizalina spp., with low particulate organic matter flux values, muddy sediments, and more refractory organic matter. The distribution of this group seems to be related to episodic fluxes of food particles to the seafloor, which are influenced by the BCS at the surface and are deposited under low deep current activity (DWBC).

Membrane-aerated biofilm proton and oxygen flux during chemical toxin exposure.

PubMed

McLamore, E S; Zhang, W; Porterfield, D M; Banks, M K

2010-09-15

Bioreactors containing sessile bacteria (biofilms) grown on hollow fiber membranes have been used for treatment of many wastestreams. Real time operational control of bioreactor performance requires detailed knowledge of the relationship between bulk liquid water quality and physiological transport at the biofilm-liquid interface. Although large data sets exist describing membrane-aerated bioreactor effluent quality, very little real time data is available characterizing boundary layer transport under physiological conditions. A noninvasive, microsensor technique was used to quantify real time (≈1.5 s) changes in oxygen and proton flux for mature Nitrosomonas europaea and Pseudomonas aeruginosa biofilms in membrane-aerated bioreactors following exposure to environmental toxins. Stress response was characterized during exposure to toxins with known mode of action (chlorocarbonyl cyanide phenyl-hydrazone and potassium cyanide), and four environmental toxins (rotenone, 2,4-dinitrophenol, cadmium chloride, and pentachlorophenol). Exposure to sublethal concentrations of all environmental toxins caused significant increases in O(2) and/or H(+) flux (depending on the mode of action). These real time microscale signatures (i.e., fingerprints) of O(2) and H(+) flux can be coupled with bulk liquid analysis to improve our understanding of physiology in counter-diffusion biofilms found within membrane aerated bioreactors; leading to enhanced monitoring/modeling strategies for bioreactor control.

Predicting riverine dissolved silica fluxes by chemical weathering: results from a hyperactive region and analysis of first-order controls

NASA Astrophysics Data System (ADS)

Hartmann, Jens; Jansen, Nils; Dürr, Hans H.; Harashima, Akira; Okubo, Kenji; Kempe, Stephan

2010-05-01

Silicate weathering and resulting transport of dissolved matter influence the global carbon cycle in two ways. First, by the uptake of atmospheric/soil CO2, and second, by providing the oceanic ecosystems via the fluvial systems with the nutrient dissolved silica (DSi). Previous work suggests that regions dominated by volcanics are hyperactive or even 'hot spots' concerning DSi-mobilization from the critical zone. Here, we present a new approach for predicting riverine DSi-fluxes by chemical weathering, emphasizing 'first-order' controlling factors (lithology, runoff, relief, land cover and temperature). This approach is applied to the Japanese Archipelago, a region characterized by a high percentage of volcanics (29.1% of surface area). The presented DSi-flux model is based on data of 516 catchments, covering approximately 56.7% of the area of the Japanese Archipelago. The spatial distribution of lithology - one of the most important first order controls - is taken from a new, high resolution map of Japan. Results show that the Japanese Archipelago is a hyperactive region with a specific DSi-yield 6.6 times higher than the world average of 3.3 t SiO2 km-2 a-1, but with large regional variations. Approximately 10% of its area exceeds 10 times the world average specific DSi-yield. Slope constitutes another important controlling factor on the mobilization of DSi-fluxes from the critical zone, besides lithology and runoff, and can exceed the influence of runoff on specific DSi-yields. Even though the monitored area on the Japanese Archipelago stretches from about 31° to 46° N, temperature is not identified as a significant first-order model variable. This may be due to the fact that slope, runoff and lithology are correlated with temperature due to regional settings of the Archipelago, and temperature information is substituted to a certain extent by these factors. Land cover data also do not improve the prediction model. This may partly be attributed to misinterpreted land cover information from satellite images. Implications of results for chemical weathering rates based on lithological information applied are discussed. Reference: Hartmann, J., Jansen, N., Dürr, H.H., Harashima, A., Okubo, K., Kempe S. (2010) Predicting riverine dissolved silica fluxes into coastal zones from a hyperactive region and analysis of their first order controls. International Journal of Earth Sciences, 99(1), 207-230. doi:10.1007/s00531-008-0381-5.

Spatiotemporal dynamics of carbon dioxide and methane fluxes from agricultural and restored wetlands in the California Delta

NASA Astrophysics Data System (ADS)

Hatala, Jaclyn Anne

The Sacramento-San Joaquin Delta in California was drained for agriculture and human settlement over a century ago, resulting in extreme rates of soil subsidence and release of CO2 to the atmosphere from peat oxidation. Because of this century-long ecosystem carbon imbalance where heterotrophic respiration exceeded net primary productivity, most of the land surface in the Delta is now up to 8 meters below sea level. To potentially reverse this trend of chronic carbon loss from Delta ecosystems, land managers have begun converting drained lands back to flooded ecosystems, but at the cost of increased production of CH4, a much more potent greenhouse gas than CO2. To evaluate the impacts of inundation on the biosphere-atmophere exchange of CO2 and CH4 in the Delta, I first measured and analyzed net fluxes of CO2 and CH4 for two continuous years with the eddy covariance technique in a drained peatland pasture and a recently re-flooded rice paddy. This analysis demonstrated that the drained pasture was a consistent large source of CO2 and small source of CH 4, whereas the rice paddy was a mild sink for CO2 and a mild source of CH4. However more importantly, this first analysis revealed nuanced complexities for measuring and interpreting patterns in CO2 and CH4 fluxes through time and space. CO2 and CH4 fluxes are inextricably linked in flooded ecosystems, as plant carbon serves as the primary substrate for the production of CH4 and wetland plants also provide the primary transport pathway of CH4 flux to the atmosphere. At the spatially homogeneous rice paddy during the summer growing season, I investigated rapid temporal coupling between CO2 and CH4 fluxes. Through wavelet Granger-causality analysis, I demonstrated that daily fluctuations in growing season gross ecosystem productivity (photosynthesis) exert a stronger control than temperature on the diurnal pattern in CH4 flux from rice. At a spatially heterogeneous restored wetland site, I analyzed the spatial coupling between net CO2 and CH4 fluxes by characterizing two-dimensional patterns of emergent vegetation within eddy covariance flux footprints. I combined net CO2 and CH4 fluxes from three eddy flux towers with high-resolution remote sensing imagery classified for emergent vegetation and an analytical 2-D flux footprint model to assess the impact of vegetation fractal pattern and abundance on the measured flux. Both emergent vegetation abundance and fractal complexity are important metrics for constraining variability within CO2 and CH4 flux in this complex landscape. Scaling between carbon flux measurements at individual sites and regional scales depends on the connection to remote sensing metrics that can be broadly applied. In the final chapter of this dissertation, I analyzed a long term dataset of hyperspectral ground reflectance measurements collected within the flux tower footprints of three structurally similar yet functionally diverse ecosystems: an annual grassland, a degraded pepperweed pasture, and a rice paddy. The normalized difference vegetation index (NDVI) was highly correlated with landscape-scale photosynthesis across all sites, however this work also revealed new potential spectral indices with high correlation to both net and partitioned CO2 fluxes. This analysis within this dissertation serves as a framework for considering the impacts of temporal and spatial heterogeneity on measured landscape-scale fluxes of CO2 and CH4. Scaling measurements through time and space is especially critical for interpreting fluxes of trace gases with a high degree of temporal heterogeneity, like CH4 and N 2O, from landscapes that have a high degree of spatial heterogeneity, like wetlands. This work articulates a strong mechanistic connection between CO2 and CH4 fluxes in wetland ecosystems, and provides important management considerations for implementing and monitoring inundated land-use conversion as an effective carbon management strategy in the California Delta.

40 CFR Table 2 to Subpart Rrr of... - Summary of Operating Requirements for New and Existing Affected Sources and Emission Units

Code of Federal Regulations, 2010 CFR

2010-07-01

... above the top of the passage between sidewell and hearth during reactive flux injection, unless the hearth is also controlled. Fluxing in sidewell furnace hearth Add reactive flux only to the sidewell of the furnace unless the hearth is also controlled. Group 1 furnace without add-on controls (including...

Transport induced by mean-eddy interaction: II. Analysis of transport processes

NASA Astrophysics Data System (ADS)

Ide, Kayo; Wiggins, Stephen

2015-03-01

We present a framework for the analysis of transport processes resulting from the mean-eddy interaction in a flow. The framework is based on the Transport Induced by the Mean-Eddy Interaction (TIME) method presented in a companion paper (Ide and Wiggins, 2014) [1]. The TIME method estimates the (Lagrangian) transport across stationary (Eulerian) boundaries defined by chosen streamlines of the mean flow. Our framework proceeds after first carrying out a sequence of preparatory steps that link the flow dynamics to the transport processes. This includes the construction of the so-called "instantaneous flux" as the Hovmöller diagram. Transport processes are studied by linking the signals of the instantaneous flux field to the dynamical variability of the flow. This linkage also reveals how the variability of the flow contributes to the transport. The spatio-temporal analysis of the flux diagram can be used to assess the efficiency of the variability in transport processes. We apply the method to the double-gyre ocean circulation model in the situation where the Rossby-wave mode dominates the dynamic variability. The spatio-temporal analysis shows that the inter-gyre transport is controlled by the circulating eddy vortices in the fast eastward jet region, whereas the basin-scale Rossby waves have very little impact.

Efficient estimation of the maximum metabolic productivity of batch systems.

PubMed

St John, Peter C; Crowley, Michael F; Bomble, Yannick J

2017-01-01

Production of chemicals from engineered organisms in a batch culture involves an inherent trade-off between productivity, yield, and titer. Existing strategies for strain design typically focus on designing mutations that achieve the highest yield possible while maintaining growth viability. While these methods are computationally tractable, an optimum productivity could be achieved by a dynamic strategy in which the intracellular division of resources is permitted to change with time. New methods for the design and implementation of dynamic microbial processes, both computational and experimental, have therefore been explored to maximize productivity. However, solving for the optimal metabolic behavior under the assumption that all fluxes in the cell are free to vary is a challenging numerical task. Previous studies have therefore typically focused on simpler strategies that are more feasible to implement in practice, such as the time-dependent control of a single flux or control variable. This work presents an efficient method for the calculation of a maximum theoretical productivity of a batch culture system using a dynamic optimization framework. The proposed method follows traditional assumptions of dynamic flux balance analysis: first, that internal metabolite fluxes are governed by a pseudo-steady state, and secondly that external metabolite fluxes are dynamically bounded. The optimization is achieved via collocation on finite elements, and accounts explicitly for an arbitrary number of flux changes. The method can be further extended to calculate the complete Pareto surface of productivity as a function of yield. We apply this method to succinate production in two engineered microbial hosts, Escherichia coli and Actinobacillus succinogenes , and demonstrate that maximum productivities can be more than doubled under dynamic control regimes. The maximum theoretical yield is a measure that is well established in the metabolic engineering literature and whose use helps guide strain and pathway selection. We present a robust, efficient method to calculate the maximum theoretical productivity: a metric that will similarly help guide and evaluate the development of dynamic microbial bioconversions. Our results demonstrate that nearly optimal yields and productivities can be achieved with only two discrete flux stages, indicating that near-theoretical productivities might be achievable in practice.

Mixed Layer Temperature Budget for the Northward Propagating Summer Monsoon Intraseasonal Oscillation (MISO) in the Central Bay of Bengal

NASA Astrophysics Data System (ADS)

Girishkumar, M. S.; Joseph, J.; Thangaprakash, V. P.; Pottapinjara, V.; McPhaden, M. J.

2017-11-01

Composite analyses of mixed layer temperature (MLT) budget terms from near-surface meteorological and oceanic observations in the central Bay of Bengal are utilized to evaluate the modulation of air-sea interactions and MLT processes in response to the summer monsoon intraseasonal oscillation (MISO). For this purpose, we use moored buoy data at 15°N, 12°N, and 8°N along 90°E together with TropFlux meteorological parameters and the Ocean Surface Current Analyses Real-time (OSCAR) current product. Our analysis shows a strong cooling tendency in MLT with maximum amplitude in the central and northern BoB during the northward propagation of enhanced convective activity associated with the active phase of the MISO; conversely, warming occurs during the suppressed phase of the MISO. The surface mixed layer is generally heated during convectively inactive phases of the MISO primarily due to increased net surface heat flux into the ocean. During convectively active MISO phases, the surface mixed layer is cooled by the combined influence of net surface heat loss to the atmosphere and entrainment cooling at the base of mixed layer. The variability of net surface heat flux is primarily due to modulation of latent heat flux and shortwave radiation. Shortwave is mostly controlled by an enhancement or reduction of cloudiness during the active and inactive MISO phases and latent heat flux is mostly controlled by variations in air-sea humidity difference.

Variation character of stagnation point heat flux for hypersonic pointed bodies from continuum to rarefied flow states and its bridge function study

NASA Astrophysics Data System (ADS)

Wang, Zhihui; Bao, Lin; Tong, Binggang

2009-12-01

This paper is a research on the variation character of stagnation point heat flux for hypersonic pointed bodies from continuum to rarefied flow states by using theoretical analysis and numerical simulation methods. The newly developed near space hypersonic cruise vehicles have sharp noses and wingtips, which desires exact and relatively simple methods to estimate the stagnation point heat flux. With the decrease of the curvature radius of the leading edge, the flow becomes rarefied gradually, and viscous interaction effects and rarefied gas effects come forth successively, which results in that the classical Fay-Riddell equation under continuum hypothesis will become invalid and the variation of stagnation point heat flux is characterized by a new trend. The heat flux approaches the free molecular flow limit instead of an infinite value when the curvature radius of the leading edge tends to 0. The physical mechanism behind this phenomenon remains in need of theoretical study. Firstly, due to the fact that the whole flow regime can be described by Boltzmann equation, the continuum and rarefied flow are analyzed under a uniform framework. A relationship is established between the molecular collision insufficiency in rarefied flow and the failure of Fourier’s heat conduction law along with the increasing significance of the nonlinear heat flux. Then based on an inspiration drew from Burnett approximation, control factors are grasped and a specific heat flux expression containing the nonlinear term is designed in the stagnation region of hypersonic leading edge. Together with flow pattern analysis, the ratio of nonlinear to linear heat flux W r is theoretically obtained as a parameter which reflects the influence of nonlinear factors, i.e. a criterion to classify the hypersonic rarefied flows. Ultimately, based on the characteristic parameter W r , a bridge function with physical background is constructed, which predicts comparative reasonable results in coincidence well with DSMC and experimental data in the whole flow regime.

Optical sampling of the flux tower footprint

NASA Astrophysics Data System (ADS)

Gamon, J. A.

2015-03-01

The purpose of this review is to address the reasons and methods for conducting optical remote sensing within the flux tower footprint. Fundamental principles and conclusions gleaned from over two decades of proximal remote sensing at flux tower sites are reviewed. An organizing framework is the light-use efficiency (LUE) model, both because it is widely used, and because it provides a useful theoretical construct for integrating optical remote sensing with flux measurements. Multiple ways of driving this model, ranging from meteorological measurements to remote sensing, have emerged in recent years, making it a convenient conceptual framework for comparative experimental studies. New interpretations of established optical sampling methods, including the Photochemical Reflectance Index (PRI) and Solar-Induced Fluorescence (SIF), are discussed within the context of the LUE model. Multi-scale analysis across temporal and spatial axes is a central theme, because such scaling can provide links between ecophysiological mechanisms detectable at the level of individual organisms and broad patterns emerging at larger scales, enabling evaluation of emergent properties and extrapolation to the flux footprint and beyond. Proper analysis of sampling scale requires an awareness of sampling context that is often essential to the proper interpretation of optical signals. Additionally, the concept of optical types, vegetation exhibiting contrasting optical behavior in time and space, is explored as a way to frame our understanding of the controls on surface-atmosphere fluxes. Complementary NDVI and PRI patterns across ecosystems are offered as an example of this hypothesis, with the LUE model and light-response curve providing an integrating framework. We conclude that experimental approaches allowing systematic exploration of plant optical behavior in the context of the flux tower network provides a unique way to improve our understanding of environmental constraints and ecophysiological function. In addition to an enhanced mechanistic understanding of ecosystem processes, this integration of remote sensing with flux measurements offers many rich opportunities for upscaling, satellite validation, and informing practical management objectives ranging form assessing ecosystem health and productivity to quantifying biospheric carbon sequestration.

A GIS approach to conducting biogeochemical research in wetlands

NASA Technical Reports Server (NTRS)

Brannon, David P.; Irish, Gary J.

1985-01-01

A project was initiated to develop an environmental data base to address spatial aspects of both biogeochemical cycling and resource management in wetlands. Specific goals are to make regional methane flux estimates and site specific water level predictions based on man controlled water releases within a wetland study area. The project will contribute to the understanding of the Earth's biosphere through its examination of the spatial variability of methane emissions. Although wetlands are thought to be one of the primary sources for release of methane to the atmosphere, little is known about the spatial variability of methane flux. Only through a spatial analysis of methane flux rates and the environmental factors which influence such rates can reliable regional and global methane emissions be calculated. Data will be correlated and studied from Landsat 4 instruments, from a ground survey of water level recorders, precipitation recorders, evaporation pans, and supplemental gauges, and from flood gate water release; and regional methane flux estimates will be made.

AmeriFlux US-ARc ARM Southern Great Plains control site- Lamont

DOE Data Explorer

Torn, Margaret [Lawrence Berkeley National Laboratory

2016-01-01

This is the AmeriFlux version of the carbon flux data for the site US-ARc ARM Southern Great Plains control site- Lamont. Site Description - The ARM SGP Control site is located in the native tallgrass prairies of the USDA Grazinglands Research Laboratory near El Reno, OK. One of two adjacent 35 ha plots with identical towers, measurements at the US-ARc unburned plot are used as the experimental control. The second plot, US-Arb, was burned on 2005/03/08. Measurement comparisons between the control and burn plot are used to address questions regarding the effects of burning activities on carbon fluxes. The region evaded burning activities for at least 15 years. Current disturbances consist of only light grazing activities.

Carbon dioxide emissions from a septic tank soakaway in a northern maritime climate.

PubMed

Somlai-Haase, Celia; Knappe, Jan; Gill, Laurence

2017-05-15

Here, we present the first attempt to quantify long-term and diurnal variations of CO 2 fluxes from a soakaway of an on-site wastewater treatment system serving a single house located in a northern maritime climate (Ireland). An automated soil gas flux chamber system was deployed semi-continuously over a period of 17months, recording hourly flux measurements from the soakaway (F soak ) and a control site (F control ). Soil gas fluxes expressed seasonal and diurnal variations: F soak and F control ranged from 0.43 to 100.26μmolCO 2 m -2 s -1 and 0.45 to 19.92μmolCO 2 m -2 s -1 with median fluxes of 6.86 and 5.05μmolCO 2 m -2 s -1 , respectively. While temperature, soil water content, and atmospheric pressure were identified as the most significant environmental factors correlated to the release of CO 2 from the control site, fluxes from the soakaway showed weaker correlations in regard to environmental factors. Assuming homogeneous spatial flux distributions, the soakaway emitted 15.0kgyr -1 more CO 2 into the atmosphere in total compared to a similarly sized control site. Copyright © 2017 Elsevier B.V. All rights reserved.

Modeling, analysis, control and design application guidelines of Doubly Fed Induction Generator (DFIG) for wind power applications

NASA Astrophysics Data System (ADS)

Masaud, Tarek

Double Fed Induction Generators (DFIG) has been widely used for the past two decades in large wind farms. However, there are many open-ended problems yet to be solved before they can be implemented in some specific applications. This dissertation deals with the general analysis, modeling, control and applications of the DFIG for large wind farm applications. A detailed "d-q" model of DFIG along with other applications is simulated using the MATLAB/Simulink platform. The simulation results have been discussed in detail in both sub-synchronous and super-synchronous mode of operation. An improved vector control strategy based on the rotor flux oriented vector control has been proposed to control the active power output of the DFIG. The new vector control strategy is compared with the stator flux oriented vector control which is commonly used. It is observed that the new improved vector control method provides a better active power tracking accuracy compare with the stator flux oriented vector control. The behavior of the DFIG -based wind farm under the various grid disturbances is also studied in this dissertation. The implementation of the Flexible AC Transmission System devices (FACTS) to overcome the voltage stability issue for such applications is investigated. The study includes the implementation of both a static synchronous compensator (STATCOM), and the static VAR compensator (SVC) as dynamic reactive power compensators at the point of common coupling to support DFIG-based wind farm during disturbances. Integrating FACTS protect the grid connected DFIG-based wind farm from going offline during and after the disturbances. It is found that the both devices improve the transient performance and therefore helps the wind turbine generator system to remain in service during grid faults. A comparison between the performance of the two devices in terms of the amount of reactive power injected, time response and the application cost has been discussed in this dissertation. Finally, the integration of the battery energy storage system (BESS) into a grid connected DFIG- based wind turbine as a proposed solution to smooth out the output power during wind speed variations is also addressed.

Analysis of streamflow distribution of non-point source nitrogen export from long-term urban-rural catchments to guide watershed management in the Chesapeake Bay watershed

NASA Astrophysics Data System (ADS)

Duncan, J. M.; Band, L. E.; Groffman, P.

2017-12-01

Discharge, land use, and watershed management practices (stream restoration and stormwater control measures) have been found to be important determinants of nitrogen (N) export to receiving waters. We used long-term water quality stations from the Baltimore Ecosystem Study Long-Term Ecological Research (BES LTER) Site to quantify nitrogen export across streamflow conditions at the small watershed scale. We calculated nitrate and total nitrogen fluxes using methodology that allows for changes over time; weighted regressions on time, discharge, and seasonality. Here we tested the hypotheses that a) while the largest N stream fluxes occur during storm events, there is not a clear relationship between N flux and discharge and b) N export patterns are aseasonal in developed watersheds where sources are larger and retention capacity is lower. The goal is to scale understanding from small watersheds to larger ones. Developing a better understanding of hydrologic controls on nitrogen export is essential for successful adaptive watershed management at societally meaningful spatial scales.

Fish introductions and light modulate food web fluxes in tropical streams: a whole-ecosystem experimental approach.

PubMed

Collins, Sarah M; Thomas, Steven A; Heatherly, Thomas; MacNeill, Keeley L; Leduc, Antoine O H C; López-Sepulcre, Andrés; Lamphere, Bradley A; El-Sabaawi, Rana W; Reznick, David N; Pringle, Catherine M; Flecker, Alexander S

2016-11-01

Decades of ecological study have demonstrated the importance of top-down and bottom-up controls on food webs, yet few studies within this context have quantified the magnitude of energy and material fluxes at the whole-ecosystem scale. We examined top-down and bottom-up effects on food web fluxes using a field experiment that manipulated the presence of a consumer, the Trinidadian guppy Poecilia reticulata, and the production of basal resources by thinning the riparian forest canopy to increase incident light. To gauge the effects of these reach-scale manipulations on food web fluxes, we used a nitrogen ( 15 N) stable isotope tracer to compare basal resource treatments (thinned canopy vs. control) and consumer treatments (guppy introduction vs. control). The thinned canopy stream had higher primary production than the natural canopy control, leading to increased N fluxes to invertebrates that feed on benthic biofilms (grazers), fine benthic organic matter (collector-gatherers), and organic particles suspended in the water column (filter feeders). Stream reaches with guppies also had higher primary productivity and higher N fluxes to grazers and filter feeders. In contrast, N fluxes to collector-gatherers were reduced in guppy introduction reaches relative to upstream controls. N fluxes to leaf-shredding invertebrates, predatory invertebrates, and the other fish species present (Hart's killifish, Anablepsoides hartii) did not differ across light or guppy treatments, suggesting that effects on detritus-based linkages and upper trophic levels were not as strong. Effect sizes of guppy and canopy treatments on N flux rates were similar for most taxa, though guppy effects were the strongest for filter feeding invertebrates while canopy effects were the strongest for collector-gatherer invertebrates. Combined, these results extend previous knowledge about top-down and bottom-up controls on ecosystems by providing experimental, reach-scale evidence that both pathways can act simultaneously and have equally strong influence on nutrient fluxes from inorganic pools through primary consumers. © 2016 by the Ecological Society of America.

A Reaction Between High Mn-High Al Steel and CaO-SiO2-Type Molten Mold Flux: Part II. Reaction Mechanism, Interface Morphology, and Al2O3 Accumulation in Molten Mold Flux

NASA Astrophysics Data System (ADS)

Kang, Youn-Bae; Kim, Min-Su; Lee, Su-Wan; Cho, Jung-Wook; Park, Min-Seok; Lee, Hae-Geon

2013-04-01

Following a series of laboratory-scale experiments, the mechanism of a chemical reaction 4[{Al}] + 3({SiO}_2) = 3[{Si}] + 2({Al}_2{O}_3) between high-alloyed TWIP (TWin-Induced Plasticity) steel containing Mn and Al and molten mold flux composed mainly of CaO-SiO2 during the continuous casting process is discussed in the present article in the context of kinetic analysis, morphological evolution at the reaction interface. By the kinetic analysis using a two-film theory, a rate-controlling step of the chemical reaction at the interface between the molten steel and the molten flux is found to be mass transport of Al in a boundary layer of the molten steel, as long as the molten steel and the molten flux phases are concerned. Mass transfer coefficient of the Al in the boundary layer (k_{{Al}}) is estimated to be 0.9 to 1.2 × 10-4 m/s at 1773 K (1500 ^{circ}C). By utilizing experimental data at various temperatures, the following equation is obtained for the k_{{Al}}; ln k_{{Al}} = -14,290/T - 1.1107. Activation energy for the mass transfer of Al in the boundary layer is 119 kJ/mol, which is close to a value of activation energy for mass transfer in metal phase. The composition evolution of Al in the molten steel was well explained by the mechanism of Al mass transfer. On the other hand, when the concentration of Al in the steel was high, a significant deviation of the composition evolution of Al in the molten steel was observed. By observing reaction interface between the molten steel and the molten flux, it is thought that the chemical reaction controlled by the mass transfer of Al seemed to be disturbed by formation of a solid product layer of MgAl2O4. A model based on a dynamic mass balance and the reaction mechanism of mass transfer of Al in the boundary layer for the low Al steel was developed to predict (pct Al2O3) accumulation rate in the molten mold flux.

Response of hyporheic zones to transient forcing

NASA Astrophysics Data System (ADS)

Singh, T.; Wu, L.; Gomez-Velez, J. D.; Krause, S.; Hannah, D. M.; Lewandowski, J.; Nuetzmann, G.

2017-12-01

Exchange of water, solutes, and energy between river channels and hyporheic zones (HZs) modulates biogeochemical cycling, regulates stream temperature and impacts ecological structure and function. Numerical modelling of HZ processes is required as field observations are challenging for transient flow. To gain a deeper mechanistic understanding of the effects of transient discharge on hyporheic exchange, we performed a systematic analysis using numerical experiments. In this case, we vary (i) the characteristics of time-varying flood events; (ii) river bedform geometry; (iii) river hydraulic geometry; and (iv) the magnitude and direction of groundwater fluxes (neutral, gaining and losing conditions). We conceptualize the stream bed as a two-dimensional system. Whereby the flow is driven by a dynamically changing head distribution at the water-sediment interface and is modulated by steady groundwater flow. Our model estimates both net values for a single bedform and spatial distributions of (i) the flow field; (ii) mean residence times; and (iii) the concentration of a conservative tracer. A detailed sensitivity analysis was performed by changing channel slope, flood characteristics, groundwater upwelling/downwelling fluxes and biogeochemical time-scales in different bedforms such as ripples, dunes and alternating bars. Results show that change of parameters can have a substantial impact on exchange fluxes which can lead to the expansion, contraction, emergence and/or dissipation of HZs . Our results also reveal that groundwater fluxes have different impacts on HZs during flood events, depending on the channel slope and bedform topography. It is found that topographies with smaller aspect ratios and shallower slopes are more affected by groundwater upwelling/downwelling fluxes during flood events. The analysis of biogeochemical transformations shows that discharge events can potentially affects the efficiencies of nitrate removal. Taking into consideration multiple morphological characteristics along with hydrological controls are important to improve model conceptualizations at the reach and watershed scale.

The Infrared Astronomical Satellite /IRAS/ Scientific Data Analysis System /SDAS/ sky flux subsystem

NASA Technical Reports Server (NTRS)

Stagner, J. R.; Girard, M. A.

1980-01-01

The sky flux subsystem of the Infrared Astronomical Satellite Scientific Data Analysis System is described. Its major output capabilities are (1) the all-sky lune maps (8-arcminute pixel size), (2) galactic plane maps (2-arcminute pixel size) and (3) regional maps of small areas such as extended sources greater than 1-degree in extent. The major processing functions are to (1) merge the CRDD and pointing data, (2) phase the detector streams, (3) compress the detector streams in the in-scan and cross-scan directions, and (4) extract data. Functional diagrams of the various capabilities of the subsystem are given. Although this device is inherently nonimaging, various calibrated and geometrically controlled imaging products are created, suitable for quantitative and qualitative scientific interpretation.

Field scale spatiotemporal analysis of surface soil moisture for evaluating point-scale in situ networks

USDA-ARS?s Scientific Manuscript database

Soil moisture is an intrinsic state variable that varies considerably in space and time. From a hydrologic viewpoint, soil moisture controls runoff, infiltration, storage and drainage. Soil moisture determines the partitioning of the incoming radiation between latent and sensible heat fluxes. Althou...

Ground heat flux and power sources of low-enthalpy geothermal systems

NASA Astrophysics Data System (ADS)

Bayer, Peter; Blum, Philipp; Rivera, Jaime A.

2015-04-01

Geothermal heat pumps commonly extract energy from the shallow ground at depths as low as approximately 400 m. Vertical borehole heat exchangers are often applied, which are seasonally operated for decades. During this lifetime, thermal anomalies are induced in the ground and surface-near aquifers, which often grow over the years and which alleviate the overall performance of the geothermal system. As basis for prediction and control of the evolving energy imbalance in the ground, focus is typically set on the ground temperatures. This is reflected in regulative temperature thresholds, and in temperature trends, which serve as indicators for renewability and sustainability. In our work, we examine the fundamental heat flux and power sources, as well as their temporal and spatial variability during geothermal heat pump operation. The underlying rationale is that for control of ground temperature evolution, knowledge of the primary heat sources is fundamental. This insight is also important to judge the validity of simplified modelling frameworks. For instance, we reveal that vertical heat flux from the surface dominates the basal heat flux towards a borehole. Both fluxes need to be accounted for as proper vertical boundary conditions in the model. Additionally, the role of horizontal groundwater advection is inspected. Moreover, by adopting the ground energy deficit and long-term replenishment as criteria for system sustainability, an uncommon perspective is adopted that is based on the primary parameter rather than induced local temperatures. In our synthetic study and dimensionless analysis, we demonstrate that time of ground energy recovery after system shutdown may be longer than what is expected from local temperature trends. In contrast, unrealistically long recovery periods and extreme thermal anomalies are predicted without account for vertical ground heat fluxes and only when the energy content of the geothermal reservoir is considered.

Treatment tolerance and patient-reported outcomes favor online hemodiafiltration compared to high-flux hemodialysis in the elderly.

PubMed

Morena, Marion; Jaussent, Audrey; Chalabi, Lotfi; Leray-Moragues, Hélène; Chenine, Leila; Debure, Alain; Thibaudin, Damien; Azzouz, Lynda; Patrier, Laure; Maurice, Francois; Nicoud, Philippe; Durand, Claude; Seigneuric, Bruno; Dupuy, Anne-Marie; Picot, Marie-Christine; Cristol, Jean-Paul; Canaud, Bernard

2017-06-01

Large cohort studies suggest that high convective volumes associated with online hemodiafiltration may reduce the risk of mortality/morbidity compared to optimal high-flux hemodialysis. By contrast, intradialytic tolerance is not well studied. The aim of the FRENCHIE (French Convective versus Hemodialysis in Elderly) study was to compare high-flux hemodialysis and online hemodiafiltration in terms of intradialytic tolerance. In this prospective, open-label randomized controlled trial, 381 elderly chronic hemodialysis patients (over age 65) were randomly assigned in a one-to-one ratio to either high-flux hemodialysis or online hemodiafiltration. The primary outcome was intradialytic tolerance (day 30-day 120). Secondary outcomes included health-related quality of life, cardiovascular risk biomarkers, morbidity, and mortality. During the observational period for intradialytic tolerance, 85% and 84% of patients in high-flux hemodialysis and online hemodiafiltration arms, respectively, experienced at least one adverse event without significant difference between groups. As exploratory analysis, intradialytic tolerance was also studied, considering the sessions as a statistical unit according to treatment actually received. Over a total of 11,981 sessions, 2,935 were complicated by the occurrence of at least one adverse event, with a significantly lower occurrence in online hemodiafiltration with fewer episodes of intradialytic symptomatic hypotension and muscle cramps. By contrast, health-related quality of life, morbidity, and mortality were not different in both groups. An improvement in the control of metabolic bone disease biomarkers and β2-microglobulin level without change in serum albumin concentration was observed with online hemodiafiltration. Thus, overall outcomes favor online hemodiafiltration over high-flux hemodialysis in the elderly. Copyright © 2017 International Society of Nephrology. Published by Elsevier Inc. All rights reserved.

Design Comparison of Inner and Outer Rotor of Permanent Magnet Flux Switching Machine for Electric Bicycle Application

NASA Astrophysics Data System (ADS)

Jusoh, L. I.; Sulaiman, E.; Bahrim, F. S.; Kumar, R.

2017-08-01

Recent advancements have led to the development of flux switching machines (FSMs) with flux sources within the stators. The advantage of being a single-piece machine with a robust rotor structure makes FSM an excellent choice for speed applications. There are three categories of FSM, namely, the permanent magnet (PM) FSM, the field excitation (FE) FSM, and the hybrid excitation (HE) FSM. The PMFSM and the FEFSM have their respective PM and field excitation coil (FEC) as their key flux sources. Meanwhile, as the name suggests, the HEFSM has a combination of PM and FECs as the flux sources. The PMFSM is a simple and cheap machine, and it has the ability to control variable flux, which would be suitable for an electric bicycle. Thus, this paper will present a design comparison between an inner rotor and an outer rotor for a single-phase permanent magnet flux switching machine with 8S-10P, designed specifically for an electric bicycle. The performance of this machine was validated using the 2D- FEA. As conclusion, the outer-rotor has much higher torque approximately at 54.2% of an innerrotor PMFSM. From the comprehensive analysis of both designs it can be conclude that output performance is lower than the SRM and IPMSM design machine. But, it shows that the possibility to increase the design performance by using “deterministic optimization method”.

Sulphur flux through the sulphate assimilation pathway is differently controlled by adenosine 5'-phosphosulphate reductase under stress and in transgenic poplar plants overexpressing gamma-ECS, SO, or APR.

PubMed

Scheerer, Ursula; Haensch, Robert; Mendel, Ralf R; Kopriva, Stanislav; Rennenberg, Heinz; Herschbach, Cornelia

2010-01-01

Sulphate assimilation provides reduced sulphur for the synthesis of cysteine, methionine, and numerous other essential metabolites and secondary compounds. The key step in the pathway is the reduction of activated sulphate, adenosine 5'-phosphosulphate (APS), to sulphite catalysed by APS reductase (APR). In the present study, [(35)S]sulphur flux from external sulphate into glutathione (GSH) and proteins was analysed to check whether APR controls the flux through the sulphate assimilation pathway in poplar roots under some stress conditions and in transgenic poplars. (i) O-Acetylserine (OAS) induced APR activity and the sulphur flux into GSH. (ii) The herbicide Acetochlor induced APR activity and results in a decline of GSH. Thereby the sulphur flux into GSH or protein remained unaffected. (iii) Cd treatment increased APR activity without any changes in sulphur flux but lowered sulphate uptake. Several transgenic poplar plants that were manipulated in sulphur metabolism were also analysed. (i) Transgenic poplar plants that overexpressed the gamma-glutamylcysteine synthetase (gamma-ECS) gene, the enzyme catalysing the key step in GSH formation, showed an increase in sulphur flux into GSH and sulphate uptake when gamma-ECS was targeted to the cytosol, while no changes in sulphur flux were observed when gamma-ECS was targeted to plastids. (ii) No effect on sulphur flux was observed when the sulphite oxidase (SO) gene from Arabidopsis thaliana, which catalyses the back reaction of APR, that is the reaction from sulphite to sulphate, was overexpressed. (iii) When Lemna minor APR was overexpressed in poplar, APR activity increased as expected, but no changes in sulphur flux were observed. For all of these experiments the flux control coefficient for APR was calculated. APR as a controlling step in sulphate assimilation seems obvious under OAS treatment, in gamma-ECS and SO overexpressing poplars. A possible loss of control under certain conditions, that is Cd treatment, Acetochlor treatment, and in APR overexpressing poplar, is discussed.

Flux-Feedback Magnetic-Suspension Actuator

NASA Technical Reports Server (NTRS)

Groom, Nelson J.

1990-01-01

Flux-feedback magnetic-suspension actuator provides magnetic suspension and control forces having linear transfer characteristics between force command and force output over large range of gaps. Hall-effect devices used as sensors for electronic feedback circuit controlling currents flowing in electromagnetic windings to maintain flux linking suspended element at substantially constant value independent of changes in length of gap. Technique provides effective method for maintenance of constant flux density in gap and simpler than previous methods. Applications include magnetic actuators for control of shapes and figures of antennas and of precise segmented reflectors, magnetic suspensions in devices for storage of angular momentum and/or kinetic energy, and systems for control, pointing, and isolation of instruments.

CONTROL SYSTEM FOR NEUTRONIC REACTORS

DOEpatents

Crever, F.E.

1962-05-01

BS>A slow-acting shim rod for control of major variations in reactor neutron flux and a fast-acting control rod to correct minor flux variations are employed to provide a sensitive, accurate control system. The fast-acting rod is responsive to an error signal which is produced by changes in the neutron flux from a predetermined optimum level. When the fast rod is thus actuated in a given direction, means is provided to actuate the slow-moving rod in that direction to return the fast rod to a position near the midpoint of its control range. (AEC)

Biotic, abiotic and management controls on methanol fluxes above a temperate mountain grassland

NASA Astrophysics Data System (ADS)

Hörtnagl, Lukas; Bamberger, Ines; Graus, Martin; Ruuskanen, Taina; Schnitzhofer, Ralf; Müller, Markus; Hansel, Armin; Wohlfahrt, Georg

2010-05-01

It was previously hypothesised that (i) stomatal conductance and plant growth play a key role in the emission of methanol (Hüve et al. 2007, Niinemets et al. 2004), (ii) methanol fluxes increase with air temperature (Niinemets and Reichstein 2003), and (iii) during cutting (leaf wounding) events and during drying high amounts of methanol are emitted into the atmosphere (Davison et al. 2008). Methanol fluxes were measured above a managed, temperate mountain grassland in Stubai Valley (Tyrol, Austria) during two growing seasons (2008 and 2009). Half-hourly flux values were calculated by means of the disjunct eddy covariance method using 3-dimensional wind-data of a sonic anemometer and mixing ratios of methanol measured with a proton-transfer-reaction-mass-spectrometer (PTR-MS). The surface conductance to water vapour was derived from measured evapotranspiration by inverting the Penman-Monteith combination equation (Wohlfahrt et al., 2009) for dry canopy conditions and used as a proxy for canopyscale stomatal conductance. Methanol fluxes exhibited a clear diurnal cycle with closetozero fluxes during nighttime and emissions, up to 10 nmol m-2 s-1, which followed the diurnal course of radiation and air temperature during daytime. Higher emissions of up to 30 nmol m-2 s-1were observed during cut events and spreading of organic manure. Methanol fluxes showed positive correlations with air temperature, stomatal conductance, and photosynthetically active radiation (PAR), confirming previous studies (e.g. Niinemets and Reichstein 2003). All three previously mentioned factors combined together were able to explain 40% of the observed flux variability. The influence of rapid changes in stomatal conductance on methanol fluxes, pointed out in earlier studies at the leaf-level (e.g. Niinemets and Reichstein 2003), could not be confirmed on ecosystem scale, possibly due to within-canopy gradients in stomatal conductance and the fact that fluxes were determined as half-hourly averages. As methanol is produced in expanding cell walls, the change in the measured green area index (?GAI) was used as a proxy for plant growth. However ?GAI was poorly correlated with methanol fluxes, possible explanations will be discussed. References: Davison, B., Brunner, A., Amman, C., Spirig, C., Jocher, M., Neftel, A. Cut-induced VOC emissions from agricultural grasslands. Plant Biol. 10, 76-85, 2008. Harley, P., Greenberg, J., Niinemets, Ü., and Guenther, A..: Environmental controls over methanol emission from leaves. Biogeosciences, 4, 1083-1099, 2007. Hüve, K., Christ, M., Kleist, E., Uerlings, R., Niinemets, Ü., Walter, A. and Wildt, J.: Simultaneous growth and emission measurements demonstrate an interactive control of methanol release by leaf expansion and stomata. doi:10.1093/jxb/erm038, Journal of Experimental Botany, 2007. Niinemets, Ü. and Reichstein, M.: Controls on the emission of plant volatiles through stomata: A sensitivity analysis. J. Geophys. Res., 108, 4211, doi:10.1029/2002JD002626, 2003. Niinemets, Ü., Loreto, F. and Reichstein, M.: Physiological and physicochemical controls on foliar volatile organic compound emissions. Trends in Plant Science,9, 2004. Wohlfahrt G., Haslwanter A., Hörtnagl L., Jasoni R.L., Fenstermaker L.F., Arnone J.A. III, Hammerle A. (2009) On the consequences of the energy imbalance for calculating surface conductance to water vapour. Agricultural and Forest Meteorology 149, 15561559.

X-Divertor Geometries for Deeper Detachment Without Degrading the DIII-D H-Mode

NASA Astrophysics Data System (ADS)

Covele, Brent; Kotschenreuther, M. T.; Valanju, P. M.; Mahajan, S. M.; Leonard, A. W.; Hyatt, A. W.; McLean, A. G.; Thomas, D. M.; Guo, H. Y.; Watkins, J. G.; Makowski, M. A.; Hill, D. N.

2015-11-01

Recent DIII-D experiments comparing the standard divertor (SD) and X-Divertor (XD) geometries show heat and particle flux reduction at the divertor target plate. The XD features large poloidal flux expansion, increased connection length, and poloidal field line flaring, quantified by the Divertor Index. Both SD and XD were pushed deep into detachment with increased gas puffing, until core energy confinement and pedestal pressure were substantially reduced. As expected, outboard target heat fluxes are significantly reduced in the XD compared to the SD under similar upstream plasma conditions, even at low Greenwald fraction. The high-triangularity (floor) XD cases show larger reduction in temperature, heat, and particle flux relative to the SD in all cases, while low-triangularity (shelf) XD cases show more modest reductions over the SD. Consequently, heat flux reduction and divertor detachment may be achieved in the XD with less gas puffing and higher pedestal pressures. Further causative analysis, as well as detailed modeling with SOLPS, is underway. These initial experiments suggest the XD as a promising candidate to achieve divertor heat flux control compatible with robust H-mode operation. Work supported by US DOE under DE-FC02-04ER54698, DE-AC52-07NA27344, DE-FG02-04ER54754, and DE-FG02-04ER54742.

Net Ecosystem Production (NEP) of the Great Plains, United States

USGS Publications Warehouse

Howard, Daniel; Gilmanov, Tagir; Gu, Yingxin; Wylie, Bruce; Zhang, Li

2012-01-01

Flux tower networks, such as AmeriFlux and FLUXNET, consist of a growing number of eddy covariance flux tower sites that provide a synoptic record of the exchange of carbon, water, and energy between the ecosystem and atmosphere at various temporal frequencies. These towers also detect and measure certain site characteristics, such as wind, temperature, precipitation, humidity, atmospheric pressure, soil features, and phenological progressions. Efforts are continuous to combine flux tower network data with remote sensing data to upscale the conditions observed at specific sites to a regional and, ultimately, worldwide scale. Data-driven regression tree models have the ability to incorporate flux tower records and remote sensing data to quantify exchanges of carbon with the atmosphere (Wylie and others, 2007; Xiao and others, 2010; Zhang and others, 2010; Zhang and others, 2011). Previous study results demonstrated the dramatic effect weather has on NEP and revealed specific ecoregions and times acting as carbon sinks or sources. As of 2012, more than 100 site-years of flux tower measurements, represented by more than 50 individual cropland or grassland sites throughout the Great Plains and surrounding area, have been acquired, quality controlled, and partitioned into gross photosynthesis (Pg) and ecosystem Re using detailed light-response, soil temperature, and vapor pressure deficit (VPD) based analysis.

Empirical Characterization of Low-Altitude Ion Flux Derived from TWINS

NASA Astrophysics Data System (ADS)

Goldstein, J.; LLera, K.; McComas, D. J.; Redfern, J.; Valek, P. W.

2018-05-01

In this study we analyze ion differential flux from 10 events between 2008 and 2015. The ion fluxes are derived from low-altitude emissions (LAEs) in energetic neutral atom (ENA) images obtained by Two Wide-angle Imaging Neutral-atom Spectrometers (TWINS). The data set comprises 119.44 hr of observations, including 4,284 per energy images with 128,277 values of differential ENA flux from pixels near Earth's limb. Limb pixel data are extracted and mapped to a common polar ionospheric grid and associated with values of the Dst index. Statistical analysis is restricted to pixels within 10% of the LAE emissivity peak. For weak Dst conditions we find a premidnight peak in the average ion precipitation, whose flux and location are relatively insensitive to energy. For moderate Dst, elevated flux levels appear over a wider magnetic local time (MLT) range, with a separation of peak locations by energy. Strong disturbances bring a dramatic flux increase across the entire nightside at all energies but strongest for low energies in the postmidnight sector. The arrival of low-energy ions can lower the average energy for strong Dst, even as it raises the total integral number flux. TWINS-derived ion fluxes provide a macroscale measurement of the average precipitating ion distribution and confirm that convection, either quasi-steady or bursty, is an important process controlling the spatial and spectral properties of precipitating ions. The premidnight peak (weak Dst), MLT widening and energy-versus-MLT dependence (moderate Dst), and postmidnight low-energy ion enhancement (strong Dst) are consistent with observations and models of steady or bursty convective transport.

Feedback control of persistent-current oscillation based on the atomic-clock technique

NASA Astrophysics Data System (ADS)

Yu, Deshui; Dumke, Rainer

2018-05-01

We propose a scheme of stabilizing the persistent-current Rabi oscillation based on the flux qubit-resonator-atom hybrid structure. The low-Q L C resonator weakly interacts with the flux qubit and maps the persistent-current Rabi oscillation of the flux qubit onto the intraresonator electric field. This oscillating electric field is further coupled to a Rydberg-Rydberg transition of the 87Rb atoms. The Rabi-frequency fluctuation of the flux qubit is deduced from measuring the atomic population via the fluorescence detection and stabilized by feedback controlling the external flux bias. Our numerical simulation indicates that the feedback-control method can efficiently suppress the background fluctuations in the flux qubit, especially in the low-frequency limit. This technique may be extensively applicable to different types of superconducting circuits, paving a way to long-term-coherence superconducting quantum information processing.

Theory of stability, and regulation and control of ecological system in oasis

NASA Astrophysics Data System (ADS)

Pan, Xiaoling; Chao, Jiping

2003-06-01

Starting with analysis on the evolving course of oasis and the characteristics and evolution of transitional zone between oasis and desert, in consideration of ecological elements including plant stomata resistance, area covered by vegetation, and physical elements including albedo of vegetation and bare soil, atmosphere temperature, and humidity, under the condition of the balance among net radiation flux, latent heat flux, and sensible heat flux, the following are calculated: temperatures of vegetation and bare soil in different conditions, as well as the evapotranspiration rate of ecosystem. Analysis on evapotranspiration rate indicates that it depends on both the climate of environment and the physiological and ecological conditions of plants. On certain conditions, the evapotranspiration rate of transitional zone between oasis and desert (i.e. area covered by vegetation less than 20%), in some parameter domains, appears in bifurcation or multiequilibrium state. Meanwhile, in such area, ecosystem is extremely unstable. Any minor change to the balance will cause either increase or reduction of area covered by vegetation in ecosystem, on the basis of discussion on the emergency of these phenomena. This paper is attempting to propose an effective way of destruction and rebuilt ecosystem in transitional zone. The way is to control the evaporation of plant through selecting anti-drought country plant with big stomata resistance, and modify the roughness of the underlying surface in ecosystem by establishing rational interspace structure of plant community, so as to put the degenerative ecosystem into the natural succession track. This primary theory is being verified through observation and analysis on historical data.

Correlating two-photon excited fluorescence imaging of breast cancer cellular redox state with seahorse flux analysis of normalized cellular oxygen consumption

NASA Astrophysics Data System (ADS)

Hou, Jue; Wright, Heather J.; Chan, Nicole; Tran, Richard; Razorenova, Olga V.; Potma, Eric O.; Tromberg, Bruce J.

2016-06-01

Two-photon excited fluorescence (TPEF) imaging of the cellular cofactors nicotinamide adenine dinucleotide and oxidized flavin adenine dinucleotide is widely used to measure cellular metabolism, both in normal and pathological cells and tissues. When dual-wavelength excitation is used, ratiometric TPEF imaging of the intrinsic cofactor fluorescence provides a metabolic index of cells-the "optical redox ratio" (ORR). With increased interest in understanding and controlling cellular metabolism in cancer, there is a need to evaluate the performance of ORR in malignant cells. We compare TPEF metabolic imaging with seahorse flux analysis of cellular oxygen consumption in two different breast cancer cell lines (MCF-7 and MDA-MB-231). We monitor metabolic index in living cells under both normal culture conditions and, for MCF-7, in response to cell respiration inhibitors and uncouplers. We observe a significant correlation between the TPEF-derived ORR and the flux analyzer measurements (R=0.7901, p<0.001). Our results confirm that the ORR is a valid dynamic index of cell metabolism under a range of oxygen consumption conditions relevant for cancer imaging.

Tactile communication using a CO(2) flux stimulation for blind or deafblind people.

PubMed

da Cunha, Jose Carlos; Bordignon, Luiz Alberto; Nohama, Percy

2010-01-01

This paper describes a tactile stimulation system for producing nonvisual image patterns to blind or deafblind people. The stimulator yields a CO(2) pulsatile flux directed to the user's skin throughout a needle that is coupled to a 2-D tactile plotter. The fluxtactile plotter operates with two step motor mounted on a wood structure, controlled by a program developed to produce alphanumerical characters and geometric figures of different size and speed, which will be used to investigate the psychophysical properties of this kind of tactile communication. CO(2) is provided by a cylinder that delivers a stable flux, which is converted to a pulsatile mode through a high frequency solenoid valve that can chop it up to 1 kHz. Also, system temperature is controlled by a Peltier based device. Tests on the prototype indicate that the system is a valuable tool to investigate the psychophysical properties of the skin in response to stimulation by CO(2) jet, allowing a quantitative and qualitative analysis as a function of stimulation parameters. With the system developed, it was possible to plot the geometric figures proposed: triangles, rectangles and octagons, in different sizes and speeds, and verify the control of the frequency of CO(2) jet stimuli.

Suspended sediment fluxes in a tidal wetland: Measurement, controlling factors, and error analysis

USGS Publications Warehouse

Ganju, N.K.; Schoellhamer, D.H.; Bergamaschi, B.A.

2005-01-01

Suspended sediment fluxes to and from tidal wetlands are of increasing concern because of habitat restoration efforts, wetland sustainability as sea level rises, and potential contaminant accumulation. We measured water and sediment fluxes through two channels on Browns Island, at the landward end of San Francisco Bay, United States, to determine the factors that control sediment fluxes on and off the island. In situ instrumentation was deployed between October 10 and November 13, 2003. Acoustic Doppler current profilers and the index velocity method were employed to calculate water fluxes. Suspended sediment concentrations (SSC) were determined with optical sensors and cross-sectional water sampling. All procedures were analyzed for their contribution to total error in the flux measurement. The inability to close the water balance and determination of constituent concentration were identified as the main sources of error; total error was 27% for net sediment flux. The water budget for the island was computed with an unaccounted input of 0.20 m 3 s-1 (22% of mean inflow), after considering channel flow, change in water storage, evapotranspiration, and precipitation. The net imbalance may be a combination of groundwater seepage, overland flow, and flow through minor channels. Change of island water storage, caused by local variations in water surface elevation, dominated the tidalty averaged water flux. These variations were mainly caused by wind and barometric pressure change, which alter regional water levels throughout the Sacramento-San Joaquin River Delta. Peak instantaneous ebb flow was 35% greater than peak flood flow, indicating an ebb-dominant system, though dominance varied with the spring-neap cycle. SSC were controlled by wind-wave resuspension adjacent to the island and local tidal currents that mobilized sediment from the channel bed. During neap tides sediment was imported onto the island but during spring tides sediment was exported because the main channel became ebb dominant Over the 34-d monitoring period 14,000 kg of suspended sediment were imported through the two channels. The water imbalance may affect the sediment balance if the unmeasured water transport pathways are capable of transporting large amounts of sediment. We estimate a maximum of 2,800 kg of sediment may have been exported through unmeasured pathways, giving a minimum net import of 11,200 kg. Sediment flux measurements provide insight on tidal to fortnightly marsh sedimentation processes, especially in complex systems where sedimentation is spatially and temporally variable. ?? 2005 Estuarine Research Federation.

Carbon fluxes, evapotranspiration, and water use efficiency of terrestrial ecosystems in China

Treesearch

Jingfeng Xiao; Ge Sun; Jiquan Chen; Hui Chen; Shiping Chen; Gang Dong

2013-01-01

The magnitude, spatial patterns, and controlling factors of the carbon and water fluxes of terrestrial ecosystems in China are not well understood due to the lack of ecosystem-level flux observations. We synthesized flux and micrometeorological observations from 22 eddy covariance flux sites across China,and examined the carbon fluxes, evapotranspiration (ET), and...

A synthesis of methane emissions from 71 northern, temperate, and subtropical wetlands.

PubMed

Turetsky, Merritt R; Kotowska, Agnieszka; Bubier, Jill; Dise, Nancy B; Crill, Patrick; Hornibrook, Ed R C; Minkkinen, Kari; Moore, Tim R; Myers-Smith, Isla H; Nykänen, Hannu; Olefeldt, David; Rinne, Janne; Saarnio, Sanna; Shurpali, Narasinha; Tuittila, Eeva-Stiina; Waddington, J Michael; White, Jeffrey R; Wickland, Kimberly P; Wilmking, Martin

2014-07-01

Wetlands are the largest natural source of atmospheric methane. Here, we assess controls on methane flux using a database of approximately 19 000 instantaneous measurements from 71 wetland sites located across subtropical, temperate, and northern high latitude regions. Our analyses confirm general controls on wetland methane emissions from soil temperature, water table, and vegetation, but also show that these relationships are modified depending on wetland type (bog, fen, or swamp), region (subarctic to temperate), and disturbance. Fen methane flux was more sensitive to vegetation and less sensitive to temperature than bog or swamp fluxes. The optimal water table for methane flux was consistently below the peat surface in bogs, close to the peat surface in poor fens, and above the peat surface in rich fens. However, the largest flux in bogs occurred when dry 30-day averaged antecedent conditions were followed by wet conditions, while in fens and swamps, the largest flux occurred when both 30-day averaged antecedent and current conditions were wet. Drained wetlands exhibited distinct characteristics, e.g. the absence of large flux following wet and warm conditions, suggesting that the same functional relationships between methane flux and environmental conditions cannot be used across pristine and disturbed wetlands. Together, our results suggest that water table and temperature are dominant controls on methane flux in pristine bogs and swamps, while other processes, such as vascular transport in pristine fens, have the potential to partially override the effect of these controls in other wetland types. Because wetland types vary in methane emissions and have distinct controls, these ecosystems need to be considered separately to yield reliable estimates of global wetland methane release. © 2014 John Wiley & Sons Ltd.

A synthesis of methane emissions from 71 northern, temperate, and subtropical wetlands

USGS Publications Warehouse

Turetsky, Merritt R.; Kotowska, Agnieszka; Bubier, Jill; Dise, Nancy B.; Crill, Patrick; Hornibrook, Ed R.C.; Minkkinen, Kari; Moore, Tim R.; Myers-Smith, Isla H.; Nykanen, Hannu; Olefeldt, David; Rinne, Janne; Saarnio, Sanna; Shurpali, Narasinha; Tuittila, Eeva-Stiina; Waddington, J. Michael; White, Jeffrey R.; Wickland, Kimberly P.; Wilmking, Martin

2014-01-01

Wetlands are the largest natural source of atmospheric methane. Here, we assess controls on methane flux using a database of approximately 19 000 instantaneous measurements from 71 wetland sites located across subtropical, temperate, and northern high latitude regions. Our analyses confirm general controls on wetland methane emissions from soil temperature, water table, and vegetation, but also show that these relationships are modified depending on wetland type (bog, fen, or swamp), region (subarctic to temperate), and disturbance. Fen methane flux was more sensitive to vegetation and less sensitive to temperature than bog or swamp fluxes. The optimal water table for methane flux was consistently below the peat surface in bogs, close to the peat surface in poor fens, and above the peat surface in rich fens. However, the largest flux in bogs occurred when dry 30-day averaged antecedent conditions were followed by wet conditions, while in fens and swamps, the largest flux occurred when both 30-day averaged antecedent and current conditions were wet. Drained wetlands exhibited distinct characteristics, e.g. the absence of large flux following wet and warm conditions, suggesting that the same functional relationships between methane flux and environmental conditions cannot be used across pristine and disturbed wetlands. Together, our results suggest that water table and temperature are dominant controls on methane flux in pristine bogs and swamps, while other processes, such as vascular transport in pristine fens, have the potential to partially override the effect of these controls in other wetland types. Because wetland types vary in methane emissions and have distinct controls, these ecosystems need to be considered separately to yield reliable estimates of global wetland methane release.

The role of climate on inter-annual variation in stream nitrate fluxes and concentrations.

PubMed

Gascuel-Odoux, Chantal; Aurousseau, Pierre; Durand, Patrick; Ruiz, Laurent; Molenat, Jérôme

2010-11-01

In recent decades, temporal variations in nitrate fluxes and concentrations in temperate rivers have resulted from the interaction of anthropogenic and climatic factors. The effect of climatic drivers remains unclear, while the relative importance of the drivers seems to be highly site dependent. This paper focuses on 2-6 year variations called meso-scale variations, and analyses the climatic drivers of these variations in a study site characterized by high N inputs from intensive animal farming systems and shallow aquifers with impervious bedrock in a temperate climate. Three approaches are developed: 1) an analysis of long-term records of nitrate fluxes and nitrate concentrations in 30 coastal rivers of Western France, which were well-marked by meso-scale cycles in the fluxes and concentration with a slight hysteresis; 2) a test of the climatic control using a lumped two-box model, which demonstrates that hydrological assumptions are sufficient to explain these meso-scale cycles; and 3) a model of nitrate fluxes and concentrations in two contrasted catchments subjected to recent mitigation measures, which analyses nitrate fluxes and concentrations in relation to N stored in groundwater. In coastal rivers, hydrological drivers (i.e., effective rainfall), and particularly the dynamics of the water table and rather stable nitrate concentration, explain the meso-scale cyclic patterns. In the headwater catchment, agricultural and hydrological drivers can interact according to their settings. The requirements to better distinguish the effect of climate and human changes in integrated water management are addressed: long-term monitoring, coupling the analysis and the modelling of large sets of catchments incorporating different sizes, land uses and environmental factors. Copyright © 2009 Elsevier B.V. All rights reserved.

On the relationship between finger width, velocity, and fluxes in thermohaline convection

NASA Astrophysics Data System (ADS)

Sreenivas, K. R.; Singh, O. P.; Srinivasan, J.

2009-02-01

Double-diffusive finger convection occurs in many natural processes. The theories for double-diffusive phenomena that exist at present consider systems with linear stratification in temperature and salinity. The double-diffusive systems with step change in salinity and temperature are, however, not amenable to simple stability analysis. Hence factors that control the width of the finger, velocity, and fluxes in systems that have step change in temperature and salinity have not been understood so far. In this paper we provide new physical insight regarding factors that influence finger convection in two-layer double-diffusive system through two-dimensional numerical simulations. Simulations have been carried out for density stability ratios (Rρ) from 1.5 to 10. For each density stability ratio, the thermal Rayleigh number (RaT) has been systematically varied from 7×103 to 7×108. Results from these simulations show how finger width, velocity, and flux ratios in finger convection are interrelated and the influence of governing parameters such as density stability ratio and the thermal Rayleigh number. The width of the incipient fingers at the time of onset of instability has been shown to vary as RaT-1/3. Velocity in the finger varies as RaT1/3/Rρ. Results from simulation agree with the scale analysis presented in the paper. Our results demonstrate that wide fingers have lower velocities and flux ratios compared to those in narrow fingers. This result contradicts present notions about the relation between finger width and flux ratio. A counterflow heat-exchanger analogy is used in understanding the dependence of flux ratio on finger width and velocity.

DistributedFBA.jl: High-level, high-performance flux balance analysis in Julia

DOE Office of Scientific and Technical Information (OSTI.GOV)

Heirendt, Laurent; Thiele, Ines; Fleming, Ronan M. T.

Flux balance analysis and its variants are widely used methods for predicting steady-state reaction rates in biochemical reaction networks. The exploration of high dimensional networks with such methods is currently hampered by software performance limitations. DistributedFBA.jl is a high-level, high-performance, open-source implementation of flux balance analysis in Julia. It is tailored to solve multiple flux balance analyses on a subset or all the reactions of large and huge-scale networks, on any number of threads or nodes. DistributedFBA.jl is a high-level, high-performance, open-source implementation of flux balance analysis in Julia. It is tailored to solve multiple flux balance analyses on amore » subset or all the reactions of large and huge-scale networks, on any number of threads or nodes.« less

DistributedFBA.jl: High-level, high-performance flux balance analysis in Julia

DOE PAGES

Heirendt, Laurent; Thiele, Ines; Fleming, Ronan M. T.

2017-01-16

Flux balance analysis and its variants are widely used methods for predicting steady-state reaction rates in biochemical reaction networks. The exploration of high dimensional networks with such methods is currently hampered by software performance limitations. DistributedFBA.jl is a high-level, high-performance, open-source implementation of flux balance analysis in Julia. It is tailored to solve multiple flux balance analyses on a subset or all the reactions of large and huge-scale networks, on any number of threads or nodes. DistributedFBA.jl is a high-level, high-performance, open-source implementation of flux balance analysis in Julia. It is tailored to solve multiple flux balance analyses on amore » subset or all the reactions of large and huge-scale networks, on any number of threads or nodes.« less

Design of set-point weighting PIλ + Dμ controller for vertical magnetic flux controller in Damavand tokamak.

PubMed

Rasouli, H; Fatehi, A

2014-12-01

In this paper, a simple method is presented for tuning weighted PI(λ) + D(μ) controller parameters based on the pole placement controller of pseudo-second-order fractional systems. One of the advantages of this controller is capability of reducing the disturbance effects and improving response to input, simultaneously. In the following sections, the performance of this controller is evaluated experimentally to control the vertical magnetic flux in Damavand tokamak. For this work, at first a fractional order model is identified using output-error technique in time domain. For various practical experiments, having desired time responses for magnetic flux in Damavand tokamak, is vital. To approach this, at first the desired closed loop reference models are obtained based on generalized characteristic ratio assignment method in fractional order systems. After that, for the identified model, a set-point weighting PI(λ) + D(μ) controller is designed and simulated. Finally, this controller is implemented on digital signal processor control system of the plant to fast/slow control of magnetic flux. The practical results show appropriate performance of this controller.

Multichannel Spectrometer of Time Distribution

NASA Astrophysics Data System (ADS)

Akindinova, E. V.; Babenko, A. G.; Vakhtel, V. M.; Evseev, N. A.; Rabotkin, V. A.; Kharitonova, D. D.

2015-06-01

For research and control of characteristics of radiation fluxes, radioactive sources in particular, for example, in paper [1], a spectrometer and methods of data measurement and processing based on the multichannel counter of time intervals of accident events appearance (impulses of particle detector) MC-2A (SPC "ASPECT") were created. The spectrometer has four independent channels of registration of time intervals of impulses appearance and correspondent amplitude and spectrometric channels for control along the energy spectra of the operation stationarity of paths of each of the channels from the detector to the amplifier. The registration of alpha-radiation is carried out by the semiconductor detectors with energy resolution of 16-30 keV. Using a spectrometer there have been taken measurements of oscillations of alpha-radiation 239-Pu flux intensity with a subsequent autocorrelative statistical analysis of the time series of readings.

The Heat Flux through the Ice Shell on Europa, Constraints from Measurements in Terrestrial Conditions

NASA Astrophysics Data System (ADS)

Hruba, J.; Kletetschka, G.

2017-12-01

Heat transport across the ice shell of Europa controls the thermal evolution of its interior. Such process involves energy sources that drive ice resurfacing (1). More importantly, heat flux through the ice shell controls the thickness of the ice (2), that is poorly constrained between 1 km to 30+ km (3). Thin ice would allow ocean water to be affected by radiation from space. Thick ice would limit the heat ocean sources available to the rock-ocean interface at the ocean's bottom due to tidal dissipation and potential radioactive sources. The heat flux structures control the development of geometrical configurations on the Europa's surface like double ridges, ice diapirs, chaos regions because the rheology of ice is temperature dependent (4).Analysis of temperature record of growing ice cover over a pond and water below revealed the importance of solar radiation during the ice growth. If there is no snow cover, a sufficient amount of solar radiation can penetrate through the ice and heat the water below. Due to temperature gradient, there is a heat flux from the water to the ice (Qwi), which may reduce ice growth at the bottom. Details and variables that constrain the heat flux through the ice can be utilized to estimate the ice thickness. We show with this analog analysis provides the forth step towards measurement strategy on the surface of Europa. We identify three types of thermal profiles (5) and fourth with combination of all three mechanisms.References:(1) Barr, A. C., A. P. Showman, 2009, Heat transfer in Europa's icy shell, University of Arizona Press, p. 405-430.(2) Ruiz, J., J. A. Alvarez-Gómez, R. Tejero, and N. Sánchez, 2007, Heat flow and thickness of a convective ice shell on Europa for grain size-dependent rheologies: Icarus, v. 190, p. 145-154.(3) Billings, S. E., S. A. Kattenhorn, 2005, The great thickness debate: Ice shell thickness models for Europa and comparisons with estimates based on flexure at ridges: Icarus, v. 177, p. 397-412.(4) Quick, L. C., B. D. Marsh, 2016, Heat transfer of ascending cryomagma on Europa: Journal of Volcanology and Geothermal Research, v. 319, p. 66-77.(5) Mitri, G., A. P. Showman, 2005, Convective-conductive transitions and sensitivity of a convecting ice shell to perturbations in heat flux and tidal-heating rate: Implications for Europa: Icarus, v. 177, p. 447-460.

Hydrogenated amorphous silicon formation by flux control and hydrogen effects on the growth mechanism

NASA Astrophysics Data System (ADS)

Toyoda, H.; Sugai, H.; Kato, K.; Yoshida, A.; Okuda, T.

1986-06-01

The composition of particle flux to deposit hydrogenated amorphous silicon films in a glow discharge is controlled by a combined electrostatic-magnetic deflection technique. As a result, the films are formed firstly without hydrogen ion flux, secondly by neutral flux only, and thirdly by all species fluxes. Comparison of these films reveals the significant role of hydrogen in the surface reactions. Hydrogen breaks the Si-Si bond, decreases the sticking probability of the Si atom, and replaces the SiH bond by a SiH2 bond to increase the hydrogen content of the films.

Vector magnetometer design study: Analysis of a triaxial fluxgate sensor design demonstrates that all MAGSAT Vector Magnetometer specifications can be met

NASA Technical Reports Server (NTRS)

Adams, D. F.; Hartmann, U. G.; Lazarow, L. L.; Maloy, J. O.; Mohler, G. W.

1976-01-01

The design of the vector magnetometer selected for analysis is capable of exceeding the required accuracy of 5 gamma per vector field component. The principal elements that assure this performance level are very low power dissipation triaxial feedback coils surrounding ring core flux-gates and temperature control of the critical components of two-loop feedback electronics. An analysis of the calibration problem points to the need for improved test facilities.

Temporal and spatial variations of soil carbon dioxide, methane, and nitrous oxide fluxes in a Southeast Asian tropical rainforest

NASA Astrophysics Data System (ADS)

Itoh, M.; Kosugi, Y.; Takanashi, S.; Hayashi, Y.; Kanemitsu, S.; Osaka, K.; Tani, M.; Nik, A. R.

2010-09-01

To clarify the factors controlling temporal and spatial variations of soil carbon dioxide (CO2), methane (CH4), and nitrous oxide (N2O) fluxes, we investigated these gas fluxes and environmental factors in a tropical rainforest in Peninsular Malaysia. Temporal variation of CO2 flux in a 2-ha plot was positively related to soil water condition and rainfall history. Spatially, CO2 flux was negatively related to soil water condition. When CO2 flux hotspots were included, no other environmental factors such as soil C or N concentrations showed any significant correlation. Although the larger area sampled in the present study complicates explanations of spatial variation of CO2 flux, our results support a previously reported bipolar relationship between the temporal and spatial patterns of CO2 flux and soil water condition observed at the study site in a smaller study plot. Flux of CH4 was usually negative with little variation, resulting in the soil at our study site functioning as a CH4 sink. Both temporal and spatial variations of CH4 flux were positively related to the soil water condition. Soil N concentration was also related to the spatial distribution of CH4 flux. Some hotspots were observed, probably due to CH4 production by termites, and these hotspots obscured the relationship between both temporal and spatial variations of CH4 flux and environmental factors. Temporal variation of N2O flux and soil N2O concentration was large and significantly related to the soil water condition, or in a strict sense, to rainfall history. Thus, the rainfall pattern controlled wet season N2O production in soil and its soil surface flux. Spatially, large N2O emissions were detected in wet periods at wetter and anaerobic locations, and were thus determined by soil physical properties. Our results showed that, even in Southeast Asian rainforests where distinct dry and wet seasons do not exist, variation in the soil water condition related to rainfall history controlled the temporal variations of soil CO2 flux, CH4 uptake, and N2O emission. The soil water condition associated with soil hydraulic properties was also the important controlling factor of the spatial distributions of these gas fluxes.

Relationship between mass-flux reduction and source-zone mass removal: analysis of field data.

PubMed

Difilippo, Erica L; Brusseau, Mark L

2008-05-26

The magnitude of contaminant mass-flux reduction associated with a specific amount of contaminant mass removed is a key consideration for evaluating the effectiveness of a source-zone remediation effort. Thus, there is great interest in characterizing, estimating, and predicting relationships between mass-flux reduction and mass removal. Published data collected for several field studies were examined to evaluate relationships between mass-flux reduction and source-zone mass removal. The studies analyzed herein represent a variety of source-zone architectures, immiscible-liquid compositions, and implemented remediation technologies. There are two general approaches to characterizing the mass-flux-reduction/mass-removal relationship, end-point analysis and time-continuous analysis. End-point analysis, based on comparing masses and mass fluxes measured before and after a source-zone remediation effort, was conducted for 21 remediation projects. Mass removals were greater than 60% for all but three of the studies. Mass-flux reductions ranging from slightly less than to slightly greater than one-to-one were observed for the majority of the sites. However, these single-snapshot characterizations are limited in that the antecedent behavior is indeterminate. Time-continuous analysis, based on continuous monitoring of mass removal and mass flux, was performed for two sites, both for which data were obtained under water-flushing conditions. The reductions in mass flux were significantly different for the two sites (90% vs. approximately 8%) for similar mass removals ( approximately 40%). These results illustrate the dependence of the mass-flux-reduction/mass-removal relationship on source-zone architecture and associated mass-transfer processes. Minimal mass-flux reduction was observed for a system wherein mass removal was relatively efficient (ideal mass-transfer and displacement). Conversely, a significant degree of mass-flux reduction was observed for a site wherein mass removal was inefficient (non-ideal mass-transfer and displacement). The mass-flux-reduction/mass-removal relationship for the latter site exhibited a multi-step behavior, which cannot be predicted using some of the available simple estimation functions.

SEPARATION OF THE RIBBON FROM GLOBALLY DISTRIBUTED ENERGETIC NEUTRAL ATOM FLUX USING THE FIRST FIVE YEARS OF IBEX OBSERVATIONS

DOE Office of Scientific and Technical Information (OSTI.GOV)

Schwadron, N. A.; Moebius, E.; Kucharek, H.

2014-11-01

The Interstellar Boundary Explorer (IBEX) observes the IBEX ribbon, which stretches across much of the sky observed in energetic neutral atoms (ENAs). The ribbon covers a narrow (∼20°-50°) region that is believed to be roughly perpendicular to the interstellar magnetic field. Superimposed on the IBEX ribbon is the globally distributed flux that is controlled by the processes and properties of the heliosheath. This is a second study that utilizes a previously developed technique to separate ENA emissions in the ribbon from the globally distributed flux. A transparency mask is applied over the ribbon and regions of high emissions. We thenmore » solve for the globally distributed flux using an interpolation scheme. Previously, ribbon separation techniques were applied to the first year of IBEX-Hi data at and above 0.71 keV. Here we extend the separation analysis down to 0.2 keV and to five years of IBEX data enabling first maps of the ribbon and the globally distributed flux across the full sky of ENA emissions. Our analysis shows the broadening of the ribbon peak at energies below 0.71 keV and demonstrates the apparent deformation of the ribbon in the nose and heliotail. We show global asymmetries of the heliosheath, including both deflection of the heliotail and differing widths of the lobes, in context of the direction, draping, and compression of the heliospheric magnetic field. We discuss implications of the ribbon maps for the wide array of concepts that attempt to explain the ribbon's origin. Thus, we present the five-year separation of the IBEX ribbon from the globally distributed flux in preparation for a formal IBEX data release of ribbon and globally distributed flux maps to the heliophysics community.« less

13C labeling analysis of sugars by high resolution-mass spectrometry for metabolic flux analysis.

PubMed

Acket, Sébastien; Degournay, Anthony; Merlier, Franck; Thomasset, Brigitte

2017-06-15

Metabolic flux analysis is particularly complex in plant cells because of highly compartmented metabolism. Analysis of free sugars is interesting because it provides data to define fluxes around hexose, pentose, and triose phosphate pools in different compartment. In this work, we present a method to analyze the isotopomer distribution of free sugars labeled with carbon 13 using a liquid chromatography-high resolution mass spectrometry, without derivatized procedure, adapted for Metabolic flux analysis. Our results showed a good sensitivity, reproducibility and better accuracy to determine isotopic enrichments of free sugars compared to our previous methods [5, 6]. Copyright © 2017 Elsevier Inc. All rights reserved.

Sensitivity Analysis of Flux Determination in Heart by H2 18O -provided Labeling Using a Dynamic Isotopologue Model of Energy Transfer Pathways

PubMed Central

Schryer, David W.; Peterson, Pearu; Illaste, Ardo; Vendelin, Marko

2012-01-01

To characterize intracellular energy transfer in the heart, two organ-level methods have frequently been employed: inversion and saturation transfer, and dynamic labeling. Creatine kinase (CK) fluxes obtained by following oxygen labeling have been considerably smaller than the fluxes determined by saturation transfer. It has been proposed that dynamic labeling determines net flux through CK shuttle, whereas saturation transfer measures total unidirectional flux. However, to our knowledge, no sensitivity analysis of flux determination by oxygen labeling has been performed, limiting our ability to compare flux distributions predicted by different methods. Here we analyze oxygen labeling in a physiological heart phosphotransfer network with active CK and adenylate kinase (AdK) shuttles and establish which fluxes determine the labeling state. A mathematical model consisting of a system of ordinary differential equations was composed describing enrichment in each phosphoryl group and inorganic phosphate. By varying flux distributions in the model and calculating the labeling, we analyzed labeling sensitivity to different fluxes in the heart. We observed that the labeling state is predominantly sensitive to total unidirectional CK and AdK fluxes and not to net fluxes. We conclude that measuring dynamic incorporation of into the high-energy phosphotransfer network in heart does not permit unambiguous determination of energetic fluxes with a higher magnitude than the ATP synthase rate when the bidirectionality of fluxes is taken into account. Our analysis suggests that the flux distributions obtained using dynamic labeling, after removing the net flux assumption, are comparable with those from inversion and saturation transfer. PMID:23236266

Impacts of prescribed fire on Pinus rigida Mill. in upland forests of the Atlantic Coastal Plain.

PubMed

Carlo, Nicholas J; Renninger, Heidi J; Clark, Kenneth L; Schäfer, Karina V R

2016-08-01

A comparative analysis of the impacts of prescribed fire on three upland forest stands in the Northeastern Atlantic Plain, NJ, USA, was conducted. Effects of prescribed fire on water use and gas exchange of overstory pines were estimated via sap-flux rates and photosynthetic measurements on Pinus rigida Mill. Each study site had two sap-flux plots, one experiencing prescribed fire and one control (unburned) plot for comparison before and after the fire. We found that photosynthetic capacity in terms of Rubisco-limited carboxylation rate and intrinsic water-use efficiency was unaffected, while light compensation point and dark respiration rate were significantly lower in the burned vs control plots post-fire. Furthermore, quantum yield in pines in the pine-dominated stands was less affected than pines in the mixed oak/pine stand, as there was an increase in quantum yield in the oak/pine stand post-fire compared with the control (unburned) plot. We attribute this to an effect of forest type but not fire per se. Average daily sap-flux rates of the pine trees increased compared with control (unburned) plots in pine-dominated stands and decreased in the oak/pine stand compared with control (unburned) plots, potentially due to differences in fuel consumption and pre-fire sap-flux rates. Finally, when reference canopy stomatal conductance was analyzed, pines in the pine-dominated stands were more sensitive to changes in vapor pressure deficit (VPD), while stomatal responses of pines in the oak/pine stand were less affected by VPD. Therefore, prescribed fire affects physiological functioning and water use of pines, but the effects may be modulated by forest stand type and fuel consumption pattern, which suggests that these factors may need to be taken into account for forest management in fire-dominated systems. © The Author 2016. Published by Oxford University Press. All rights reserved. For Permissions, please email: journals.permissions@oup.com.

Differential effects of safflower oil versus fish oil feeding on insulin-stimulated glycogen synthesis, glycolysis, and pyruvate dehydrogenase flux in skeletal muscle: a 13C nuclear magnetic resonance study.

PubMed

Jucker, B M; Cline, G W; Barucci, N; Shulman, G I

1999-01-01

To examine the effects of safflower oil versus fish oil feeding on in vivo intramuscular glucose metabolism and relative pyruvate dehydrogenase (PDH) versus tricarboxylic acid (TCA) cycle flux, rats were pair-fed on diets consisting of 1) 59% safflower oil, 2) 59% menhaden fish oil, or 3) 59% carbohydrate (control) in calories. Rates of glycolysis and glycogen synthesis were assessed by monitoring [1-(13)C]glucose label incorporation into [1-(13)C]glycogen, [3-(13)C]lactate, and [3-(13)C]alanine in the hindlimb of awake rats via 13C nuclear magnetic resonance (NMR) spectroscopy during a euglycemic (approximately 6 mmol/l) hyperinsulinemic (approximately 180 microU/ml) clamp. A steady-state isotopic analysis of lactate, alanine, and glutamate was used to determine the relative PDH versus TCA cycle flux present in muscle under these conditions. The safflower oil-fed rats were insulin resistant compared with control and fish oil-fed rats, as reflected by a markedly reduced glucose infusion rate (Ginf) during the clamp (21.4 +/- 2.3 vs. 31.6 +/- 2.8 and 31.7 +/- 1.9 mg x kg(-1) x min(-1) in safflower oil versus control and fish oil groups, respectively, P < 0.006). This decrease in insulin-stimulated glucose disposal in the safflower oil group was associated with a lower rate of glycolysis (21.7 +/- 2.2 nmol x g(-1) x min(-1)) versus control (62.1 +/- 10.3 nmol x g(-1) x min(-1), P < 0.001) and versus fish oil (45.7 +/- 6.7 nmol x g(-1) x min(-1), P < 0.04), as no change in glycogen synthesis (103 +/- 15, 133 +/- 19, and 125 +/- 14 nmol x g(-1) x min(-1) in safflower oil, fish oil, and control, respectively) was detected. The intramuscular triglyceride (TG) content was increased in the safflower oil group (7.3 +/- 0.8 micromol/g) compared with the control group (5.2 +/- 0.8 micromol/g, P < 0.05) and the fish oil group (3.6 +/- 1.1 micromol/g, P < 0.01). Conversely, the percent PDH versus TCA cycle flux was decreased in the safflower oil (43 +/- 8%) versus the control (73 +/- 8%, P < 0.01) and fish oil (64 +/- 6%, P < 0.05) groups. These data suggest that the reduced insulin-stimulated glucose disposal attributed to safflower oil feeding was a consequence of reduced glycolytic flux associated with an increase in relative free fatty acid/ketone oxidation versus TCA cycle flux, whereas fish oil feeding did not alter glucose metabolism and may in part be protective of insulin-stimulated glucose disposal by limiting intramuscular TG deposition.

Estimating sensible heat flux in agricultural screenhouses by the flux-variance and half-order time derivative methods

NASA Astrophysics Data System (ADS)

Achiman, Ori; Mekhmandarov, Yonatan; Pirkner, Moran; Tanny, Josef

2016-04-01

Previous studies have established that the eddy covariance (EC) technique is reliable for whole canopy flux measurements in agricultural crops covered by porous screens, i.e., screenhouses. Nevertheless, the eddy covariance technique remains difficult to apply in the farm due to costs, operational complexity, and post-processing of data - thereby inviting alternative techniques to be developed. The subject of this research was estimating the sensible heat flux by two turbulent transport techniques, namely, Flux-Variance (FV) and Half-order Time Derivative (HTD) whose instrumentation needs and operational demands are not as elaborate as the EC. The FV is based on the standard deviation of high frequency temperature measurements and a similarity constant CT. The HTD method requires mean air temperature and air velocity data. Measurements were carried out in two types of screenhouses: (i) a banana plantation in a light shading (8%) screenhouse; (ii) a pepper crop in a dense insect-proof (50-mesh) screenhouse. In each screenhouse an EC system was deployed for reference and high frequency air temperature measurements were conducted using miniature thermocouples installed at several levels to identify the optimal measurement height. Quality control analysis showed that turbulence development and flow stationarity conditions in the two structures were suitable for flux measurements by the EC technique. Energy balance closure slopes in the two screenhouses were larger than 0.71, in agreement with results for open fields. Regressions between sensible heat flux measured by EC and estimated by FV resulted with CT values that were usually larger than 1, the typical value for open field. In both shading and insect-proof screenhouses the CT value generally increased with height. The optimal measurement height, defined as the height with maximum R2 of the regression between EC and FV sensible heat fluxes, was just above the screen. CT value at optimal height was 2.64 and 1.52 for the shading and insect-proof screenhouses, respectively, with R2 = 0.73 in both types of structures. FV data analysis of the temperature signal at frequencies lower than 10 Hz showed that R2 of these regressions was insensitive to the data analysis frequency up to 0.5 Hz. This suggests that turbulent transport in the screenhouses was governed by large scale vortices. Regressions between EC and HTD sensible heat fluxes resulted with R2 which slightly decreased with height and had values between 0.3 and 0.4 for both screenhouses. The regression slopes also decreased with height and had values between 0.4 and 0.6. We conclude that in screenhouses the FV technique provides a more reliable estimate of the sensible heat flux than the HTD; however, the latter is simpler and more robust in terms of equipment, operation and data analysis and hence may be more attainable for day-to-day use by the growers.

On the controls of deep convection and lightning in the Amazon

NASA Astrophysics Data System (ADS)

Albrecht, R. I.; Giangrande, S. E.; Wang, D.; Morales, C. A.; Pereira, R. F. O.; Machado, L.; Silva Dias, M. A. F.

2017-12-01

Local observations and remote sensing have been extensively used to unravel cloud distribution and life cycle but yet their representativeness in cloud resolve models (CRMs) and global climate models (GCMs) are still very poor. In addition, the complex cloud-aerosol-precipitation interactions (CAPI), as well as thermodynamics, dynamics and large scale controls on convection have been the focus of many studies in the last two decades but still no final answer has been reached on the overall impacts of these interactions and controls on clouds, especially on deep convection. To understand the environmental and CAPI controls of deep convection, cloud electrification and lightning activity in the pristine region of Amazon basin, in this study we use long term satellite and field campaign measurements to depict the characteristics of deep convection and the relationships between lightning and convective fluxes in this region. Precipitation and lightning activity from the Tropical Rainfall Measuring Mission (TRMM) satellite are combined with estimates of aerosol concentrations and reanalysis data to delineate the overall controls on thunderstorms. A more detailed analysis is obtained studying these controls on the relationship between lightning activity and convective mass fluxes using radar wind profiler and 3D total lightning during GoAmazon 2014/15 field campaign. We find evidences that the large scale conditions control the distribution of the precipitation, with widespread and more frequent mass fluxes of moderate intensity during the wet season, resulting in less vigorous convection and lower lightning activity. Under higher convective available potential energy, lightning is enhanced in polluted and background aerosol conditions. The relationships found in this study can be used in model parameterizations and ensemble evaluations of both lightning activity and lightning NOx from seasonal forecasting to climate projections and in a broader sense to Earth Climate System Modeling.

Novel Integrated Radial and Axial Magnetic Bearing

NASA Technical Reports Server (NTRS)

Blumenstock, Kenneth A.; Brown, Gary L.; Powers, Edward I. (Technical Monitor)

2000-01-01

Typically, fully active magnetically suspended systems require one axial and two radial magnetic bearings. Combining radial and axial functions into a single device allows for more compact and elegant packaging. Furthermore, in the case of high-speed devices such as energy storage flywheels, it is beneficial to minimize shaft length to keep rotor mode frequencies as high as possible. Attempts have been made to combine radial and axial functionality, but with certain drawbacks. One approach requires magnetic control flux to flow through a bias magnet reducing control effectiveness, thus resulting in increased resistive losses. This approach also requires axial force producing magnetic flux to flow in a direction into the rotor laminate that is undesirable for minimizing eddy-current losses resulting in rotational losses. Another approach applies a conical rotor shape to what otherwise would be a radial heteropolar magnetic bearing configuration. However, positional non-linear effects are introduced with this scheme and the same windings are used for bias, radial, and axial control adding complexity to the controller and electronics. For this approach, the amount of axial capability must be limited. It would be desirable for an integrated radial and axial magnetic bearing to have the following characteristics, separate inputs for radial and axial control for electronics and control simplicity, all magnetic control fluxes should only flow through their respective air gaps and should not flow through any bias magnets for minimal resistive losses, be of a homopolar design to minimize rotational losses, position related non-linear effects should be minimized, and dependent upon the design parameters, be able to achieve any radial/axial force or power ratio as desired. The integrated radial and axial magnetic bearing described in this paper exhibits all these characteristics. Magnetic circuit design, design equations, and analysis results will be presented.

Design and performance of a dynaniic gas flux chamber.

PubMed

Reichman, Rivka; Rolston, Dennis E

2002-01-01

Chambers are commonly used to measure the emission of many trace gases and chemicals from soil. An aerodynamic (flow through) chamber was designed and fabricated to accurately measure the surface flux of trace gases. Flow through the chamber was controlled with a small vacuum at the outlet. Due to the design using fans, a partition plate, and aerodynamic ends, air is forced to sweep parallel and uniform over the entire soil surface. A fraction of the air flowing inside the chamber is sampled in the outlet. The air velocity inside the chamber is controlled by fan speed and outlet suction flow rate. The chamber design resulted in a uniform distribution of air velocity at the soil surface. Steady state flux was attained within 5 min when the outlet air suction rate was 20 L/min or higher. For expected flux rates, the presence of the chamber did not affect the measured fluxes at outlet suction rates of around 20 L/min, except that the chamber caused some cooling of the surface in field experiments. Sensitive measurements of the pressure deficit across the soil layer in conjunction with measured fluxes in the source box and chamber outlet show that the outflow rate must be controlled carefully to minimize errors in the flux measurements. Both over- and underestimation of the fluxes are possible if the outlet flow rate is not controlled carefully. For this design, the chamber accurately measured steady flux at outlet air suction rates of approximately 20 L/min when the pressure deficit within the chamber with respect to the ambient atmosphere ranged between 0.46 and 0.79 Pa.

Wet deposition of mercury in Qingdao, a coastal urban city in China: Concentrations, fluxes, and influencing factors

NASA Astrophysics Data System (ADS)

Chen, Lufeng; Li, Yanbin; Liu, Chang; Guo, Lina; Wang, Xiulin

2018-02-01

Mercury (Hg) is a global pollutant of public concern because of its high toxicity and capability for worldwide distribution via long-range atmospheric transportation. Wet atmospheric deposition is an important source of Hg in both terrestrial and aquatic environments. Concentrations of various Hg species in precipitation were monitored from March 2016 to February 2017 in a coastal urban area of Qingdao, and their wet deposition fluxes were estimated. The results showed that the volume-weighted mean (VWM) concentrations of total mercury (THg), reactive mercury (RHg), dissolved THg (DTHg), particulate THg (PTHg), total methylmercury (TMeHg), and dissolved and particulate MeHg (DMeHg and PMeHg) in Qingdao's precipitation were 13.6, 1.5, 5.4, 8.2, 0.38, 0.15, and 0.22 ng L-1, respectively, and their annual deposition fluxes were estimated to be 5703.0 (THg), 666.6 (RHg), 2304.0 (DTHg), 3470.4 (PTHg), 161.6 (TMeHg), 64.0 (DMeHg), and 95.7 (PMeHg) ng m-2 y-1, respectively. A relatively high proportion of MeHg in THg was observed in precipitation (3.0 ± 2.6%) possibly due to higher methylation and contributions from an oceanic source to MeHg in the precipitation. Obvious seasonal variations in Hg concentrations and deposition fluxes were observed in the precipitation in Qingdao. Correlation analyses and multiple regression analyses showed that SO2, pH, and NO3- were the controlling factors for THg in precipitation, whereas the MeHg concentration was primarily controlled by the SO2, WS, Cl-, and THg concentrations. PM2.5 and Cl- were the major controlling factors for PMeHg/TMeHg, whereas the TMeHg/THg ratio was mainly influenced by Cl-. The THg and MeHg fluxes were primarily controlled by precipitation, whereas Cl- was also an important factor for the MeHg wet deposition flux. The results of a 72-h backward trajectory analysis in the study region with the Hybrid Single Particle Lagrangian Integrated Trajectory (HYSPLIT) model indicated that Hg deposition in Qingdao mainly originated from four major sources, i.e., the local area, northwestern China, southeastern China and an oceanic source. This oceanic source is an important source of Hg (especially MeHg) in the precipitation in Qingdao.

Diffusive flux in a model of stochastically gated oxygen transport in insect respiration

DOE Office of Scientific and Technical Information (OSTI.GOV)

Berezhkovskii, Alexander M.; Shvartsman, Stanislav Y.

Oxygen delivery to insect tissues is controlled by transport through a branched tubular network that is connected to the atmosphere by valve-like gates, known as spiracles. In certain physiological regimes, the spiracles appear to be randomly switching between open and closed states. Quantitative analysis of this regime leads a reaction-diffusion problem with stochastically switching boundary condition. We derive an expression for the diffusive flux at long times in this problem. Our approach starts with the derivation of the passage probability for a single particle that diffuses between a stochastically gated boundary, which models the opening and closing spiracle, and themore » perfectly absorbing boundary, which models oxygen absorption by the tissue. This passage probability is then used to derive an expression giving the diffusive flux as a function of the geometric parameters of the tube and characteristic time scales of diffusion and gate dynamics.« less

Diffusive flux in a model of stochastically gated oxygen transport in insect respiration.

PubMed

Berezhkovskii, Alexander M; Shvartsman, Stanislav Y

2016-05-28

Oxygen delivery to insect tissues is controlled by transport through a branched tubular network that is connected to the atmosphere by valve-like gates, known as spiracles. In certain physiological regimes, the spiracles appear to be randomly switching between open and closed states. Quantitative analysis of this regime leads a reaction-diffusion problem with stochastically switching boundary condition. We derive an expression for the diffusive flux at long times in this problem. Our approach starts with the derivation of the passage probability for a single particle that diffuses between a stochastically gated boundary, which models the opening and closing spiracle, and the perfectly absorbing boundary, which models oxygen absorption by the tissue. This passage probability is then used to derive an expression giving the diffusive flux as a function of the geometric parameters of the tube and characteristic time scales of diffusion and gate dynamics.

Spatial Transport of Magnetic Flux Surfaces in Strongly Anisotropic Turbulence

NASA Astrophysics Data System (ADS)

Matthaeus, W. H.; Servidio, S.; Wan, M.; Ruffolo, D. J.; Rappazzo, A. F.; Oughton, S.

2013-12-01

Magnetic flux surfaces afford familiar descriptions of spatial structure, dynamics, and connectivity of magnetic fields, with particular relevance in contexts such as solar coronal flux tubes, magnetic field connectivity in the interplanetary and interstellar medium, as well as in laboratory plasmas and dynamo problems [1-4]. Typical models assume that field-lines are orderly, and flux tubes remain identifiable over macroscopic distances; however, a previous study has shown that flux tubes shred in the presence of fluctuations, typically losing identity after several correlation scales [5]. Here, the structure of magnetic flux surfaces is numerically investigated in a reduced magnetohydrodynamic (RMHD) model of homogeneous turbulence. Short and long-wavelength behavior is studied statistically by propagating magnetic surfaces along the mean field. At small scales magnetic surfaces become complex, experiencing an exponential thinning. At large scales, instead, the magnetic flux undergoes a diffusive behavior. The link between the diffusion of the coarse-grained flux and field-line random walk is established by means of a multiple scale analysis. Both large and small scales limits are controlled by the Kubo number. These results have consequences for understanding and interpreting processes such as magnetic reconnection and field-line diffusion in plasmas [6]. [1] E. N. Parker, Cosmical Magnetic Fields (Oxford Univ. Press, New York, 1979). [2] J. R. Jokipii and E. N. Parker, Phys. Rev. Lett. 21, 44 (1968). [3] R. Bruno et al., Planet. Space Sci. 49, 1201 (2001). [4] M. N. Rosenbluth et al., Nuclear Fusion 6, 297 (1966). [5] W. H. Matthaeus et al., Phys. Rev. Lett. 75, 2136 (1995). [6] S. Servidio et al., submitted (2013).

Control Mechanisms of the Electron Heat Flux in the Solar Wind: Observations in Comparison to Numerical Simulations

NASA Astrophysics Data System (ADS)

Stverak, S.; Hellinger, P.; Landi, S.; Travnicek, P. M.; Maksimovic, M.

2017-12-01

Recent understanding of the heat transport and dissipation in the expanding solar wind propose number of complex control mechanisms down to the electron kinetic scales. We investigate the evolution of electron heat flux properties and constraints along the expansion using in situ observations from Helios spacecraft in comparison to numerical kinetic simulations. In particular we focus on the roles of Coulomb collisions and wave-particle interactions in shaping the electron velocity distribution functions and thus controlling the heat transported by the electron heat flux. We show the general evolution of the electron heat flux to be driven namely by the Coulomb collisions. Locally we demonstrate the wave-particle interactions related to the kinetic plasma instabilities to be providing effective constraints in case of extreme heat flux levels.

Long-Term Observations of Nitrogen and Phosphorus Export in Paired-Agricultural Watersheds under Controlled and Conventional Tile Drainage.

PubMed

Sunohara, M D; Gottschall, N; Wilkes, G; Craiovan, E; Topp, E; Que, Z; Seidou, O; Frey, S K; Lapen, D R

2015-09-01

Controlled tile drainage (CTD) regulates water and nutrient export from tile drainage systems. Observations of the effects of CTD imposed en masse at watershed scales are needed to determine the effect on downstream receptors. A paired-watershed approach was used to evaluate the effect of field-to-field CTD at the watershed scale on fluxes and flow-weighted mean concentrations (FWMCs) of N and P during multiple growing seasons. One watershed (467-ha catchment area) was under CTD management (treatment [CTD] watershed); the other (250-ha catchment area) had freely draining or uncontrolled tile drainage (UCTD) (reference [UCTD] watershed). The paired agricultural watersheds are located in eastern Ontario, Canada. Analysis of covariance and paired tests were used to assess daily fluxes and FWMCs during a calibration period when CTD intervention on the treatment watershed was minimal (2005-2006, when only 4-10% of the tile-drained area was under CTD) and a treatment period when the treatment (CTD) watershed had prolific CTD intervention (2007-2011 when 82% of tile drained fields were controlled, occupying >70% of catchment area). Significant linear regression slope changes assessed using ANCOVA ( ≤ 0.1) for daily fluxes from upstream and downstream monitoring sites pooled by calibration and treatment period were -0.06 and -0.20 (stream water) (negative values represent flux declines in CTD watershed), -0.59 and -0.77 (NH-N), -0.14 and -0.15 (NO-N), -1.77 and -2.10 (dissolved reactive P), and -0.28 and 0.45 (total P). Total P results for one site comparison contrasted with other findings likely due to unknown in-stream processes affecting total P loading, not efficacy of CTD. The FWMC results were mixed and inconclusive but suggest physical abatement by CTD is the means by which nutrient fluxes are predominantly reduced at these scales. Overall, our study results indicate that CTD is an effective practice for reducing watershed scale fluxes of stream water, N, and P during the growing season. Copyright © by the American Society of Agronomy, Crop Science Society of America, and Soil Science Society of America, Inc.

Using high-frequency sensors to identify hydroclimatological controls on storm-event variability in catchment nutrient fluxes and source zone activation

NASA Astrophysics Data System (ADS)

Blaen, Phillip; Khamis, Kieran; Lloyd, Charlotte; Krause, Stefan

2017-04-01

At the river catchment scale, storm events can drive highly variable behaviour in nutrient and water fluxes, yet short-term dynamics are frequently missed by low resolution sampling regimes. In addition, nutrient source contributions can vary significantly within and between storm events. Our inability to identify and characterise time dynamic source zone contributions severely hampers the adequate design of land use management practices in order to control nutrient exports from agricultural landscapes. Here, we utilise an 8-month high-frequency (hourly) time series of streamflow, nitrate concentration (NO3) and fluorescent dissolved organic matter concentration (FDOM) derived from optical in-situ sensors located in a headwater agricultural catchment. We characterised variability in flow and nutrient dynamics across 29 storm events. Storm events represented 31% of the time series and contributed disproportionately to nutrient loads (43% of NO3 and 36% of CDOM) relative to their duration. Principal components analysis of potential hydroclimatological controls on nutrient fluxes demonstrated that a small number of components, representing >90% of variance in the dataset, were highly significant model predictors of inter-event variability in catchment nutrient export. Hysteresis analysis of nutrient concentration-discharge relationships suggested spatially discrete source zones existed for NO3 and FDOM, and that activation of these zones varied on an event-specific basis. Our results highlight the benefits of high-frequency in-situ monitoring for characterising complex short-term nutrient dynamics and unravelling connections between hydroclimatological variability and river nutrient export and source zone activation under extreme flow conditions. These new process-based insights are fundamental to underpinning the development of targeted management measures to reduce nutrient loading of surface waters.

Numerical assessment of low-frequency dosimetry from sampled magnetic fields

NASA Astrophysics Data System (ADS)

Freschi, Fabio; Giaccone, Luca; Cirimele, Vincenzo; Canova, Aldo

2018-01-01

Low-frequency dosimetry is commonly assessed by evaluating the electric field in the human body using the scalar potential finite difference method. This method is effective only when the sources of the magnetic field are completely known and the magnetic vector potential can be analytically computed. The aim of the paper is to present a rigorous method to characterize the source term when only the magnetic flux density is available at discrete points, e.g. in case of field measurements. The method is based on the solution of the discrete magnetic curl equation. The system is restricted to the independent set of magnetic fluxes and circulations of magnetic vector potential using the topological information of the computational mesh. The solenoidality of the magnetic flux density is preserved using a divergence-free interpolator based on vector radial basis functions. The analysis of a benchmark problem shows that the complexity of the proposed algorithm is linearly dependent on the number of elements with a controllable accuracy. The method proposed in this paper also proves to be useful and effective when applied to a real world scenario, where the magnetic flux density is measured in proximity of a power transformer. A 8 million voxel body model is then used for the numerical dosimetric analysis. The complete assessment is completed in less than 5 min, that is more than acceptable for these problems.

Numerical assessment of low-frequency dosimetry from sampled magnetic fields.

PubMed

Freschi, Fabio; Giaccone, Luca; Cirimele, Vincenzo; Canova, Aldo

2017-12-29

Low-frequency dosimetry is commonly assessed by evaluating the electric field in the human body using the scalar potential finite difference method. This method is effective only when the sources of the magnetic field are completely known and the magnetic vector potential can be analytically computed. The aim of the paper is to present a rigorous method to characterize the source term when only the magnetic flux density is available at discrete points, e.g. in case of field measurements. The method is based on the solution of the discrete magnetic curl equation. The system is restricted to the independent set of magnetic fluxes and circulations of magnetic vector potential using the topological information of the computational mesh. The solenoidality of the magnetic flux density is preserved using a divergence-free interpolator based on vector radial basis functions. The analysis of a benchmark problem shows that the complexity of the proposed algorithm is linearly dependent on the number of elements with a controllable accuracy. The method proposed in this paper also proves to be useful and effective when applied to a real world scenario, where the magnetic flux density is measured in proximity of a power transformer. A 8 million voxel body model is then used for the numerical dosimetric analysis. The complete assessment is completed in less than 5 min, that is more than acceptable for these problems.

Design of set-point weighting PI{sup λ} + D{sup μ} controller for vertical magnetic flux controller in Damavand tokamak

DOE Office of Scientific and Technical Information (OSTI.GOV)

Rasouli, H.; Fatehi, A.

2014-12-15

In this paper, a simple method is presented for tuning weighted PI{sup λ} + D{sup μ} controller parameters based on the pole placement controller of pseudo-second-order fractional systems. One of the advantages of this controller is capability of reducing the disturbance effects and improving response to input, simultaneously. In the following sections, the performance of this controller is evaluated experimentally to control the vertical magnetic flux in Damavand tokamak. For this work, at first a fractional order model is identified using output-error technique in time domain. For various practical experiments, having desired time responses for magnetic flux in Damavand tokamak,more » is vital. To approach this, at first the desired closed loop reference models are obtained based on generalized characteristic ratio assignment method in fractional order systems. After that, for the identified model, a set-point weighting PI{sup λ} + D{sup μ} controller is designed and simulated. Finally, this controller is implemented on digital signal processor control system of the plant to fast/slow control of magnetic flux. The practical results show appropriate performance of this controller.« less

Flux measurements by the NRC Twin Otter atmospheric research aircraft: 1987-2011

NASA Astrophysics Data System (ADS)

Desjardins, Raymond L.; Worth, Devon E.; MacPherson, J. Ian; Bastian, Matthew; Srinivasan, Ramesh

2016-03-01

Over the past 30 years, the Canadian Twin Otter research group has operated an aircraft platform for the study of atmospheric greenhouse gas fluxes (carbon dioxide, ozone, nitrous oxide and methane) and energy exchange (latent and sensible heat) over a wide range of terrestrial ecosystems in North America. Some of the acquired data from these projects have now been archived at the Flight Research Laboratory and Agriculture and Agri-Food Canada. The dataset, which contains the measurements obtained in eight projects from 1987 to 2011 are now publicly available. All these projects were carried out in order to improve our understanding of the biophysical controls acting on land-surface atmosphere fluxes. Some of the projects also attempted to quantify the impacts of agroecosystems on the environment. To provide information on the data available, we briefly describe each project and some of the key findings by referring to previously published relevant work. As new flux analysis techniques are being developed, we are confident that much additional information can be extracted from this unique data set.

Metabolic Flux Increases Glycoprotein Sialylation: Implications for Cell Adhesion and Cancer Metastasis*

PubMed Central

Almaraz, Ruben T.; Tian, Yuan; Bhattarcharya, Rahul; Tan, Elaine; Chen, Shih-Hsun; Dallas, Matthew R.; Chen, Li; Zhang, Zhen; Zhang, Hui; Konstantopoulos, Konstantinos; Yarema, Kevin J.

2012-01-01

This study reports a global glycoproteomic analysis of pancreatic cancer cells that describes how flux through the sialic acid biosynthetic pathway selectively modulates a subset of N-glycosylation sites found within cellular proteins. These results provide evidence that sialoglycoprotein patterns are not determined exclusively by the transcription of biosynthetic enzymes or the availability of N-glycan sequons; instead, bulk metabolic flux through the sialic acid pathway has a remarkable ability to increase the abundance of certain sialoglycoproteins while having a minimal impact on others. Specifically, of 82 glycoproteins identified through a mass spectrometry and bioinformatics approach, ∼31% showed no change in sialylation, ∼29% exhibited a modest increase, whereas ∼40% experienced an increase of greater than twofold. Increased sialylation of specific glycoproteins resulted in changes to the adhesive properties of SW1990 pancreatic cancer cells (e.g. increased CD44-mediated adhesion to selectins under physiological flow and enhanced integrin-mediated cell mobility on collagen and fibronectin). These results indicate that cancer cells can become more aggressively malignant by controlling the sialylation of proteins implicated in metastatic transformation via metabolic flux. PMID:22457533

Impact of climate, CO2 and land use on terrestrial carbon and water fluxes in China based on a multi-model analysis

NASA Astrophysics Data System (ADS)

Jia, B.; Xie, Z.

2017-12-01

Climate change and anthropogenic activities have been exerting profound influences on ecosystem function and processes, including tightly coupled terrestrial carbon and water cycles. However, their relative contributions of the key controlling factors, e.g., climate, CO2 fertilization, land use and land cover change (LULCC), on spatial-temporal patterns of terrestrial carbon and water fluxes in China are still not well understood due to the lack of ecosystem-level flux observations and uncertainties in single terrestrial biosphere model (TBM). In the present study, we quantified the effect of climate, CO2, and LULCC on terrestrial carbon and water fluxes in China using multi-model simulations for their inter-annual variability (IAV), seasonal cycle amplitude (SCA) and long-term trend during the past five decades (1961-2010). In addition, their relative contributions to the temporal variations of gross primary productivity (GPP), net ecosystem productivity (NEP) and evapotranspiration (ET) were investigated through factorial experiments. Finally, the discussions about the inter-model differences and model uncertainties were presented.

Prospects for engineering dynamic CRISPR-Cas transcriptional circuits to improve bioproduction.

PubMed

Fontana, Jason; Voje, William E; Zalatan, Jesse G; Carothers, James M

2018-05-08

Dynamic control of gene expression is emerging as an important strategy for controlling flux in metabolic pathways and improving bioproduction of valuable compounds. Integrating dynamic genetic control tools with CRISPR-Cas transcriptional regulation could significantly improve our ability to fine-tune the expression of multiple endogenous and heterologous genes according to the state of the cell. In this mini-review, we combine an analysis of recent literature with examples from our own work to discuss the prospects and challenges of developing dynamically regulated CRISPR-Cas transcriptional control systems for applications in synthetic biology and metabolic engineering.

Energetics of muscle contraction: the whole is less than the sum of its parts

NASA Technical Reports Server (NTRS)

Kushmerick, M. J.; Conley, K. E.

2002-01-01

Understanding muscle energetics is a problem in optimizing supply of ATP to the demands of ATPases. The complexity of reactions and their fluxes to achieve this balance is greatly reduced by recognizing constraints imposed by the integration of common metabolites at fixed stoichiometry among modular units. ATPase is driven externally. Oxidative phosphorylation and glycogenolysis are the suppliers. We focus on their regulation which involves different controls, but reduces to two principles that enable facile experimental analysis of the supply and demand fluxes. The ratio of concentration of phosphocreatine (PCr) to ATP, not their individual values, sets the range of achievable concentrations of ADP in resting and active muscle (at fixed pH) in different cell types. This principle defines the fraction of available flux of oxidative phosphorylation utilized (at fixed enzyme activities). Then the kinetics of PCr recovery defines the kinetics of oxygen supply and substrate utilization. The second principle is the constancy of PCr and H(+) (lactate) production by glycogenolysis due to the coupling of ATPase and glycolysis. This principle enables glycogenolytic flux to be measured from intracellular proton loads. Further simplification occurs because the magnitude of the interacting fluxes and metabolite concentrations are specified within narrow limits when both the resting and active fluxes are quantified. Thus there is a small set of rules for assessing and understanding the thermodynamics and kinetics of muscle energetics.

Non-isothermal Crystallization Kinetics of Mold Fluxes for Casting High-Aluminum Steels

NASA Astrophysics Data System (ADS)

Zhou, Lejun; Li, Huan; Wang, Wanlin; Wu, Zhaoyang; Yu, Jie; Xie, Senlin

2017-12-01

This paper investigates the crystallization behavior of CaO-SiO2- and CaO-Al2O3-based mold fluxes for casting high-aluminum steels using single hot thermocouple technology, developed kinetic models, and scanning electron microscope. The results showed that the crystallization ability of the typical CaO-SiO2-based Flux A (CaO/SiO2 0.62, Al2O3 2 mass pct) is weaker than that of CaO-Al2O3-based Flux B (CaO/SiO2 4.11, Al2O3 31.9 mass pct) because of its higher initial crystallization temperature. The crystallization kinetics of Flux A was "surface nucleation and growth, interface reaction control" in the overall non-isothermal crystallization process, whereas that of Flux B was "constant nucleation rate, 1-dimensional growth, diffusion control, in the primary crystallization stage, and then transformed into constant nucleation rate, 3-dimensional growth, interface reaction control in the secondary crystallization stage." The energy dispersive spectroscopy results for Flux B suggested that the variations in the crystallization kinetics for Flux B are due to different crystals precipitating in the primary (BaCa2Al8O15) and secondary (CaAl2O4) crystallization periods during the non-isothermal crystallization process.

In vivo stationary flux analysis by 13C labeling experiments.

PubMed

Wiechert, W; de Graaf, A A

1996-01-01

Stationary flux analysis is an invaluable tool for metabolic engineering. In the last years the metabolite balancing technique has become well established in the bioengineering community. On the other hand metabolic tracer experiments using 13C isotopes have long been used for intracellular flux determination. Only recently have both techniques been fully combined to form a considerably more powerful flux analysis method. This paper concentrates on modeling and data analysis for the evaluation of such stationary 13C labeling experiments. After reviewing recent experimental developments, the basic equations for modeling carbon labeling in metabolic systems, i.e. metabolite, carbon label and isotopomer balances, are introduced and discussed in some detail. Then the basics of flux estimation from measured extracellular fluxes combined with carbon labeling data are presented and, finally, this method is illustrated by using an example from C. glutamicum. The main emphasis is on the investigation of the extra information that can be obtained with tracer experiments compared with the metabolite balancing technique alone. As a principal result it is shown that the combined flux analysis method can dispense with some rather doubtful assumptions on energy balancing and that the forward and backward flux rates of bidirectional reaction steps can be simultaneously determined in certain situations. Finally, it is demonstrated that the variant of fractional isotopomer measurement is even more powerful than fractional labeling measurement but requires much higher numerical effort to solve the balance equations.

Reviews and Syntheses: optical sampling of the flux tower footprint

NASA Astrophysics Data System (ADS)

Gamon, J. A.

2015-07-01

The purpose of this review is to address the reasons and methods for conducting optical remote sensing within the flux tower footprint. Fundamental principles and conclusions gleaned from over 2 decades of proximal remote sensing at flux tower sites are reviewed. The organizing framework used here is the light-use efficiency (LUE) model, both because it is widely used, and because it provides a useful theoretical construct for integrating optical remote sensing with flux measurements. Multiple ways of driving this model, ranging from meteorological measurements to remote sensing, have emerged in recent years, making it a convenient conceptual framework for comparative experimental studies. New interpretations of established optical sampling methods, including the photochemical reflectance index (PRI) and solar-induced chlorophyll fluorescence (SIF), are discussed within the context of the LUE model. Multi-scale analysis across temporal and spatial axes is a central theme because such scaling can provide links between ecophysiological mechanisms detectable at the level of individual organisms and broad patterns emerging at larger scales, enabling evaluation of emergent properties and extrapolation to the flux footprint and beyond. Proper analysis of the sampling scale requires an awareness of sampling context that is often essential to the proper interpretation of optical signals. Additionally, the concept of optical types, vegetation exhibiting contrasting optical behavior in time and space, is explored as a way to frame our understanding of the controls on surface-atmosphere fluxes. Complementary normalized difference vegetation index (NDVI) and PRI patterns across ecosystems are offered as an example of this hypothesis, with the LUE model and light-response curve providing an integrating framework. I conclude that experimental approaches allowing systematic exploration of plant optical behavior in the context of the flux tower network provides a unique way to improve our understanding of environmental constraints and ecophysiological function. In addition to an enhanced mechanistic understanding of ecosystem processes, this integration of remote sensing with flux measurements offers many rich opportunities for upscaling, satellite validation, and informing practical management objectives ranging from assessing ecosystem health and productivity to quantifying biospheric carbon sequestration.

Constraint-Based Modeling Highlights Cell Energy, Redox Status and α-Ketoglutarate Availability as Metabolic Drivers for Anthocyanin Accumulation in Grape Cells Under Nitrogen Limitation

PubMed Central

Soubeyrand, Eric; Colombié, Sophie; Beauvoit, Bertrand; Dai, Zhanwu; Cluzet, Stéphanie; Hilbert, Ghislaine; Renaud, Christel; Maneta-Peyret, Lilly; Dieuaide-Noubhani, Martine; Mérillon, Jean-Michel; Gibon, Yves; Delrot, Serge; Gomès, Eric

2018-01-01

Anthocyanin biosynthesis is regulated by environmental factors (such as light, temperature, and water availability) and nutrient status (such as carbon, nitrogen, and phosphate nutrition). Previous reports show that low nitrogen availability strongly enhances anthocyanin accumulation in non carbon-limited plant organs or cell suspensions. It has been hypothesized that high carbon-to-nitrogen ratio would lead to an energy excess in plant cells, and that an increase in flavonoid pathway metabolic fluxes would act as an “energy escape valve,” helping plant cells to cope with energy and carbon excess. However, this hypothesis has never been tested directly. To this end, we used the grapevine Vitis vinifera L. cultivar Gamay Teinturier (syn. Gamay Freaux or Freaux Tintorier, VIVC #4382) cell suspension line as a model system to study the regulation of anthocyanin accumulation in response to nitrogen supply. The cells were sub-cultured in the presence of either control (25 mM) or low (5 mM) nitrate concentration. Targeted metabolomics and enzyme activity determinations were used to parametrize a constraint-based model describing both the central carbon and nitrogen metabolisms and the flavonoid (phenylpropanoid) pathway connected by the energy (ATP) and reducing power equivalents (NADPH and NADH) cofactors. The flux analysis (2 flux maps generated, for control and low nitrogen in culture medium) clearly showed that in low nitrogen-fed cells all the metabolic fluxes of central metabolism were decreased, whereas fluxes that consume energy and reducing power, were either increased (upper part of glycolysis, shikimate, and flavonoid pathway) or maintained (pentose phosphate pathway). Also, fluxes of flavanone 3β-hydroxylase, flavonol synthase, and anthocyanidin synthase were strongly increased, advocating for a regulation of the flavonoid pathway by alpha-ketoglutarate levels. These results strongly support the hypothesis of anthocyanin biosynthesis acting as an energy escape valve in plant cells, and they open new possibilities to manipulate flavonoid production in plant cells. They do not, however, support a role of anthocyanins as an effective mechanism for coping with carbon excess in high carbon to nitrogen ratio situations in grape cells. Instead, constraint-based modeling output and biomass analysis indicate that carbon excess is dealt with by vacuolar storage of soluble sugars. PMID:29868039

Constraint-Based Modeling Highlights Cell Energy, Redox Status and α-Ketoglutarate Availability as Metabolic Drivers for Anthocyanin Accumulation in Grape Cells Under Nitrogen Limitation.

PubMed

Soubeyrand, Eric; Colombié, Sophie; Beauvoit, Bertrand; Dai, Zhanwu; Cluzet, Stéphanie; Hilbert, Ghislaine; Renaud, Christel; Maneta-Peyret, Lilly; Dieuaide-Noubhani, Martine; Mérillon, Jean-Michel; Gibon, Yves; Delrot, Serge; Gomès, Eric

2018-01-01

Anthocyanin biosynthesis is regulated by environmental factors (such as light, temperature, and water availability) and nutrient status (such as carbon, nitrogen, and phosphate nutrition). Previous reports show that low nitrogen availability strongly enhances anthocyanin accumulation in non carbon-limited plant organs or cell suspensions. It has been hypothesized that high carbon-to-nitrogen ratio would lead to an energy excess in plant cells, and that an increase in flavonoid pathway metabolic fluxes would act as an "energy escape valve," helping plant cells to cope with energy and carbon excess. However, this hypothesis has never been tested directly. To this end, we used the grapevine Vitis vinifera L. cultivar Gamay Teinturier (syn. Gamay Freaux or Freaux Tintorier, VIVC #4382) cell suspension line as a model system to study the regulation of anthocyanin accumulation in response to nitrogen supply. The cells were sub-cultured in the presence of either control (25 mM) or low (5 mM) nitrate concentration. Targeted metabolomics and enzyme activity determinations were used to parametrize a constraint-based model describing both the central carbon and nitrogen metabolisms and the flavonoid (phenylpropanoid) pathway connected by the energy (ATP) and reducing power equivalents (NADPH and NADH) cofactors. The flux analysis (2 flux maps generated, for control and low nitrogen in culture medium) clearly showed that in low nitrogen-fed cells all the metabolic fluxes of central metabolism were decreased, whereas fluxes that consume energy and reducing power, were either increased (upper part of glycolysis, shikimate, and flavonoid pathway) or maintained (pentose phosphate pathway). Also, fluxes of flavanone 3β-hydroxylase, flavonol synthase, and anthocyanidin synthase were strongly increased, advocating for a regulation of the flavonoid pathway by alpha-ketoglutarate levels. These results strongly support the hypothesis of anthocyanin biosynthesis acting as an energy escape valve in plant cells, and they open new possibilities to manipulate flavonoid production in plant cells. They do not, however, support a role of anthocyanins as an effective mechanism for coping with carbon excess in high carbon to nitrogen ratio situations in grape cells. Instead, constraint-based modeling output and biomass analysis indicate that carbon excess is dealt with by vacuolar storage of soluble sugars.

Stochastic flux analysis of chemical reaction networks

PubMed Central

2013-01-01

Background Chemical reaction networks provide an abstraction scheme for a broad range of models in biology and ecology. The two common means for simulating these networks are the deterministic and the stochastic approaches. The traditional deterministic approach, based on differential equations, enjoys a rich set of analysis techniques, including a treatment of reaction fluxes. However, the discrete stochastic simulations, which provide advantages in some cases, lack a quantitative treatment of network fluxes. Results We describe a method for flux analysis of chemical reaction networks, where flux is given by the flow of species between reactions in stochastic simulations of the network. Extending discrete event simulation algorithms, our method constructs several data structures, and thereby reveals a variety of statistics about resource creation and consumption during the simulation. We use these structures to quantify the causal interdependence and relative importance of the reactions at arbitrary time intervals with respect to the network fluxes. This allows us to construct reduced networks that have the same flux-behavior, and compare these networks, also with respect to their time series. We demonstrate our approach on an extended example based on a published ODE model of the same network, that is, Rho GTP-binding proteins, and on other models from biology and ecology. Conclusions We provide a fully stochastic treatment of flux analysis. As in deterministic analysis, our method delivers the network behavior in terms of species transformations. Moreover, our stochastic analysis can be applied, not only at steady state, but at arbitrary time intervals, and used to identify the flow of specific species between specific reactions. Our cases study of Rho GTP-binding proteins reveals the role played by the cyclic reverse fluxes in tuning the behavior of this network. PMID:24314153

A high resolution Passive Flux Meter approach based on colorimetric responses

NASA Astrophysics Data System (ADS)

Chardi, K.; Dombrowski, K.; Cho, J.; Hatfield, K.; Newman, M.; Annable, M. D.

2016-12-01

Subsurface water and contaminant mass flux measurements are critical in determining risk, optimizing remediation strategies, and monitoring contaminant attenuation. The standard Passive Flux Meter, hereafter knows as a (PFM), is a well-developed device used for determining and monitoring rates of groundwater and contaminant mass flux in screened wells. The current PFM is a permeable device that contains granular activated carbon impregnated with alcohol tracers which is deployed in a flow field for a designated period of time. Once extracted, sampling requires laboratory analysis to quantify Darcy flux, which can be time consuming and have significant cost. To expedite test results, a modified PFM based on the image analysis of colorimetric responses, herein referred to as a colorimetric Passive Flux Meter (cPFM), was developed. Various dyes and sorbents were selected and evaluated to determine colorimetric response to water flow. Rhodamine, fluorescent yellow, fluorescent orange, and turmeric were the dye candidates while 100% wool and a 35% wool blend with 65% rayon were the sorbent candidates selected for use in the cPFM. Ultraviolet light image analysis was used to calculate average color intensity using ImageJ, a Java-based image processing program. These results were then used to quantify Darcy flux. Error ranges evaluated for Darcy flux using the cPFM are comparable to those with the standard, activated carbon based, PFM. The cPFM has the potential to accomplish the goal of obtaining high resolution Darcy flux data while eliminating high costs and analysis time. Implications of groundwater characteristics, such as PH and contaminant concentrations, on image analysis are to be tested through laboratory analysis followed by field testing of the cPFM.

Stochastic flux analysis of chemical reaction networks.

PubMed

Kahramanoğulları, Ozan; Lynch, James F

2013-12-07

Chemical reaction networks provide an abstraction scheme for a broad range of models in biology and ecology. The two common means for simulating these networks are the deterministic and the stochastic approaches. The traditional deterministic approach, based on differential equations, enjoys a rich set of analysis techniques, including a treatment of reaction fluxes. However, the discrete stochastic simulations, which provide advantages in some cases, lack a quantitative treatment of network fluxes. We describe a method for flux analysis of chemical reaction networks, where flux is given by the flow of species between reactions in stochastic simulations of the network. Extending discrete event simulation algorithms, our method constructs several data structures, and thereby reveals a variety of statistics about resource creation and consumption during the simulation. We use these structures to quantify the causal interdependence and relative importance of the reactions at arbitrary time intervals with respect to the network fluxes. This allows us to construct reduced networks that have the same flux-behavior, and compare these networks, also with respect to their time series. We demonstrate our approach on an extended example based on a published ODE model of the same network, that is, Rho GTP-binding proteins, and on other models from biology and ecology. We provide a fully stochastic treatment of flux analysis. As in deterministic analysis, our method delivers the network behavior in terms of species transformations. Moreover, our stochastic analysis can be applied, not only at steady state, but at arbitrary time intervals, and used to identify the flow of specific species between specific reactions. Our cases study of Rho GTP-binding proteins reveals the role played by the cyclic reverse fluxes in tuning the behavior of this network.

Observations and modeling of methane flux in northern wetlands

NASA Astrophysics Data System (ADS)

Futakuchi, Y.; Ueyama, M.; Matsumoto, Y.; Yazaki, T.; Hirano, T.; Kominami, Y.; Harazono, Y.; Igarashi, Y.

2016-12-01

Methane (CH4) budgets in northern wetlands vary greatly with high spatio-temporal heterogeneity. Owing to limited available data, yet, it is difficult to constrain the CH4 emission from northern wetlands. In this context, we continuously measured CH4 fluxes at two northern wetlands. Measured fluxes were used for constraining the new model that empirically partitioned net CH4 fluxes into the processes of production, oxidation, and transport associated with ebullition, diffusion, and plant, based on the optimization technique. This study reveal the important processes related to the seasonal variations in CH4 emission with the continuous observations and inverse model analysis. The measurements have been conducted at a Sphagnum-dominated cool temperate bog (BBY) since April 2015 using the open-path eddy covariance method and a sub-arctic forested bog on permafrost in University of Alaska Fairbanks (UAF) since May 2016 using three automated chambers by a laser-based gas analyzer (FGGA-24r-EP, Los Gatos Research Inc., USA). In BBY, daily CH4 fluxes ranged from 1.9 nmol m-2 s-1 in early spring to 97.9 nmol m-2 s-1 in mid-summer. Growing-season total CH4 flux was 13 g m-2 yr-1 in 2015. In contrast, CH4 flux at the UAF site was small (0.2 to 1.0 nmol m-2 s-1), and hardly increased since start of the observation. This difference could be caused by the difference in the climate and soil conditions; mean air and soil temperature, and presence of permafrost. For BBY, the seasonal variation of CH4 emission was mostly explained by soil temperature, suggesting that the production was the important controlling process. In mid-summer when soil temperature was high, however, decrease in atmospheric pressure and increase in vegetation greenness stimulated CH4 emission probably through plant-mediated transport and form of bubble, suggesting that the transport processes were important. Based on a preliminary results by the model optimization in BBY site, CH4 fluxes were strongly influenced by the processes associated with production, ebullition, and plant-mediated transports rather than the processes associated with oxidation and diffusion. In this presentation, we will show that the new data-model fusion that we developed is the effective tool for evaluating CH4 fluxes and controlling processes at northern wetlands.

Effective soil hydraulic properties in space and time: some field data analysis and modeling concepts

USDA-ARS?s Scientific Manuscript database

Soil hydraulic properties, which control surface fluxes and storage of water and chemicals in the soil profile, vary in space and time. Spatial variability above the measurement scale (e.g., soil area of 0.07 m2 or support volume of 14 L) must be upscaled appropriately to determine “effective” hydr...

Numerical Study of Hydrothermal Wave Suppression in Thermocapillary Flow Using a Predictive Control Method

NASA Astrophysics Data System (ADS)

Muldoon, F. H.

2018-04-01

Hydrothermal waves in flows driven by thermocapillary and buoyancy effects are suppressed by applying a predictive control method. Hydrothermal waves arise in the manufacturing of crystals, including the "open boat" crystal growth process, and lead to undesirable impurities in crystals. The open boat process is modeled using the two-dimensional unsteady incompressible Navier-Stokes equations under the Boussinesq approximation and the linear approximation of the surface thermocapillary force. The flow is controlled by a spatially and temporally varying heat flux density through the free surface. The heat flux density is determined by a conjugate gradient optimization algorithm. The gradient of the objective function with respect to the heat flux density is found by solving adjoint equations derived from the Navier-Stokes ones in the Boussinesq approximation. Special attention is given to heat flux density distributions over small free-surface areas and to the maximum admissible heat flux density.

Soil CO2 Flux in the Amargosa Desert, Nevada, during El Nino 1998 and La Nina 1999

USGS Publications Warehouse

Riggs, Alan C.; Stannard, David I.; Maestas, Florentino B.; Karlinger, Michael R.; Striegl, Robert G.

2009-01-01

Mean annual soil CO2 fluxes from normally bare mineral soil in the Amargosa Desert in southern Nevada, United States, measured with clear and opaque soil CO2-flux chambers (autochambers) were small - <5 millimoles per square meter per day - during both El Nino 1998 and La Nina 1999. The 1998 opaque-chamber flux exceeded 1999 opaque-chamber flux by an order of magnitude, whereas the 1998 clear-chamber flux exceeded 1999 clear-chamber flux by less than a factor of two. These data suggest that above-normal soil moisture stimulated increased metabolic activity, but that much of the extra CO2 produced was recaptured by plants. Fluxes from warm moist soil were the largest sustained fluxes measured, and their hourly pattern is consistent with enhanced soil metabolic activity at some depth in the soil and photosynthetic uptake of a substantial portion of the CO2 released. Flux from cool moist soil was smaller than flux from warm moist soil. Flux from hot dry soil was intermediate between warm-moist and cool-moist fluxes, and clear-chamber flux was more than double the opaque-chamber flux, apparently due to a chamber artifact stemming from a thermally controlled CO2 reservoir near the soil surface. There was no demonstrable metabolic contribution to the very small flux from cool dry soil, which was dominated by diffusive up-flux of CO2 from the water table and temperature-controlled CO2-reservoir up- and down-fluxes. These flux patterns suggest that transfer of CO2 across the land surface is a complex process that is difficult to accurately measure.

The development and validation of an unmanned aerial system (UAS) for the measurement of methane flux

NASA Astrophysics Data System (ADS)

Allen, G.; Shah, A.; Williams, P. I.; Ricketts, H.; Hollingsworth, P.; Kabbabe, K.; Bourn, M.; Pitt, J. R.; Helmore, J.; Lowry, D.; Robinson, R. A.; Finlayson, A.

2017-12-01

Emission controls for CH4are a part of the Paris Agreement and other national emissions strategies. This work represents a new method for precise quantification of point-source and facility-level methane emissions flux rates to inform both the climate science community and policymakers. In this paper, we describe the development of an integrated Unmanned Aerial System (UAS) for the measurement of high-precision in-situ CH4 concentrations. We also describe the development of a mass balance flux calculation model tailored to UAS plume sampling downwind; and the validation of this method using a known emission flux from a controlled release facility. A validation field trial was conducted at the UK Met Office site in Cardington, UK, between 31 Oct and 4 Nov 2016 using the UK National Physical Laboratory's Controlled Release Facility (CRF). A modified DJI-S900 hexrotor UAS was tethered via an inlet to a ground-based Los Gatos Ultraportable Greenhouse Gas Analyser to record geospatially-referenced methane (and carbon dioxide) concentrations. Methane fluxes from the CRF were emitted at 5 kg/hr and 10 kg/hr in a series of blind trials (fluxes were not reported to the team prior to the calculation of UAS-derived flux) for a total of 7 UAS flights, which sampled 200 m downwind of source(s), each lasting around 20 minutes. The flux calculation method was adapted for sampling considerations downwind of an emission source that has not had sufficient time to develop a Gaussian morphology. The UAS-measured methane fluxes, and representative flux uncertainty (derived from an error propagation model), were found to compare well with the controlled CH4 emission rate. For the 7 experiments, the standard error between the measured and emitted CH4 flux was found to be +/-6% with a mean bias of +0.4 kg/hr. Limits of flux sensitivity (to within 25% uncertainty) were found to extend to as little as 0.12 kg/h. Further improvements to the accuracy of flux calculation could be made by appropriate onboard measurement of wind speed and direction. This system would yield highly precise flux snapshots (case studies) of methane sources of interest such as oil and gas infrastructure, landfill, and urban environments, to help in the validation of bottom-up emission inventories and in identifying and mitigating so-called super-emitter facilities.

Genotypic variation in traits controlling carbon flux responses to precipitation in switchgrass

USDA-ARS?s Scientific Manuscript database

Background/Questions/Methods Fluxes of carbon in terrestrial ecosystems are key indicators of their productivity and carbon storage potential. Ecosystem fluxes will be impacted by climate change, especially changes in rainfall amount. Fluxes may also be affected by plant traits, including abovegr...

Full-order observer for direct torque control of induction motor based on constant V/F control technique.

PubMed

Pimkumwong, Narongrit; Wang, Ming-Shyan

2018-02-01

This paper presents another control method for the three-phase induction motor that is direct torque control based on constant voltage per frequency control technique. This method uses the magnitude of stator flux and torque errors to generate the stator voltage and phase angle references for controlling the induction motor by using constant voltage per frequency control method. Instead of hysteresis comparators and optimum switching table, the PI controllers and space vector modulation technique are used to reduce torque and stator-flux ripples and achieve constant switching frequency. Moreover, the coordinate transformations are not required. To implement this control method, a full-order observer is used to estimate stator flux and overcome the problems from drift and saturation in using pure integrator. The feedback gains are designed by simple manner to improve the convergence of stator flux estimation, especially in low speed range. Furthermore, the necessary conditions to maintain the stability for feedback gain design are introduced. The simulation and experimental results show accurate and stable operation of the introduced estimator and good dynamic response of the proposed control method. Copyright © 2017 ISA. Published by Elsevier Ltd. All rights reserved.

Modeling and experimental design for metabolic flux analysis of lysine-producing Corynebacteria by mass spectrometry.

PubMed

Wittmann, C; Heinzle, E

2001-04-01

Experimental design of (13)C-tracer studies for metabolic flux analysis with mass spectrometric determination of labeling patterns was performed for the central metabolism of Corynebacterium glutamicum comprising various flux scenarios. Ratio measurement of mass isotopomer pools of Corynebacterium products lysine, alanine, and trehalose is sufficient to quantify the flux partitioning ratios (i) between glycolysis and pentose phosphate pathways (Phi(PPP)), (ii) between the split pathways in the lysine biosynthesis (Phi(DH)), (iii) at the pyruvate node (Phi(PC)), and reversibilities of (iv) glucose 6-phosphate isomerase (zeta(PGI)), (v) at the pyruvate node (zeta(PC/PEPCK)), and (vi) of transaldolase and transketolases in the PPP. Weighted sensitivities for flux parameters were derived from partial derivatives to quantitatively evaluate experimental approaches and predict precision for estimated flux parameters. Deviation of intensity ratios from ideal values of 1 was used as weighting function. Weighted flux sensitivities can be used to identify optimal type and degree of tracer labeling or potential intensity ratios to be measured. Experimental design for lysine-producing strain C. glutamicum MH 20-22B (Marx et al., Biotechnol. Bioeng. 49, 111-129, 1996) and various potential mutants with different alterations in the flux pattern showed that specific tracer labelings are optimal to quantify a certain flux parameter uninfluenced by the overall flux situation. Identified substrates of choice are [1-(13)C]glucose for the estimation of Phi(PPP) and zeta(PGI) and a 1 : 1 mixture of [U-(12)C/U-(13)C]glucose for the determination of zeta(PC/PEPCK). Phi(PC) can be quantified by feeding [4-(13)C]glucose or [U-(12)C/U-(13)C]glucose (1 : 1), whereas Phi(DH) is accessible via [4-(13)C]glucose. The sensitivity for the quantification of a certain flux parameter can be influenced by superposition through other flux parameters in the network, but substrate and measured mass isotopomers of choice remain the same. In special cases, reduced labeling degree of the tracer substrate can increase the precision of flux analysis. Enhanced precision and flux information can be achieved via multiply labeled substrates. The presented approach can be applied for effective experimental design of (13)C tracer studies for metabolic flux analysis. Intensity ratios of other products such as glutamate, valine, phenylalanine, and riboflavin also sensitively reflect flux parameters, which underlines the great potential of mass spectrometry for flux analysis. Copyright 2001 Academic Press.

Real-time plasma control in a dual-frequency, confined plasma etcher

NASA Astrophysics Data System (ADS)

Milosavljević, V.; Ellingboe, A. R.; Gaman, C.; Ringwood, J. V.

2008-04-01

The physics issues of developing model-based control of plasma etching are presented. A novel methodology for incorporating real-time model-based control of plasma processing systems is developed. The methodology is developed for control of two dependent variables (ion flux and chemical densities) by two independent controls (27 MHz power and O2 flow). A phenomenological physics model of the nonlinear coupling between the independent controls and the dependent variables of the plasma is presented. By using a design of experiment, the functional dependencies of the response surface are determined. In conjunction with the physical model, the dependencies are used to deconvolve the sensor signals onto the control inputs, allowing compensation of the interaction between control paths. The compensated sensor signals and compensated set-points are then used as inputs to proportional-integral-derivative controllers to adjust radio frequency power and oxygen flow to yield the desired ion flux and chemical density. To illustrate the methodology, model-based real-time control is realized in a commercial semiconductor dielectric etch chamber. The two radio frequency symmetric diode operates with typical commercial fluorocarbon feed-gas mixtures (Ar/O2/C4F8). Key parameters for dielectric etching are known to include ion flux to the surface and surface flux of oxygen containing species. Control is demonstrated using diagnostics of electrode-surface ion current, and chemical densities of O, O2, and CO measured by optical emission spectrometry and/or mass spectrometry. Using our model-based real-time control, the set-point tracking accuracy to changes in chemical species density and ion flux is enhanced.

Probing de novo sphingolipid metabolism in mammalian cells utilizing mass spectrometry.

PubMed

Snider, Justin M; Snider, Ashley J; Obeid, Lina M; Luberto, Chiara; Hannun, Yusuf A

2018-06-01

Sphingolipids constitute a dynamic metabolic network that interconnects several bioactive molecules, including ceramide (Cer), sphingosine (Sph), Sph 1-phosphate, and Cer 1-phosphate. The interconversion of these metabolites is controlled by a cohort of at least 40 enzymes, many of which respond to endogenous or exogenous stimuli. Typical probing of the sphingolipid pathway relies on sphingolipid mass levels or determination of the activity of individual enzymes. Either approach is unable to provide a complete analysis of flux through sphingolipid metabolism, which, given the interconnectivity of the sphingolipid pathway, is critical information to identify nodes of regulation. Here, we present a one-step in situ assay that comprehensively probes the flux through de novo sphingolipid synthesis, post serine palmitoyltransferase, by monitoring the incorporation and metabolism of the 17 carbon dihydrosphingosine precursor with LC/MS. Pulse labeling and analysis of precursor metabolism identified sequential well-defined phases of sphingolipid synthesis, corresponding to the activity of different enzymes in the pathway, further confirmed by the use of specific inhibitors and modulators of sphingolipid metabolism. This work establishes precursor pulse labeling as a practical tool for comprehensively studying metabolic flux through de novo sphingolipid synthesis and complex sphingolipid generation.

Enhancing sediment flux control and natural hazard risk mitigation through a structured conceptual planning approach

NASA Astrophysics Data System (ADS)

Simoni, S.; Vignoli, G.; Mazzorana, B.

2017-08-01

Sediment fluxes from mountain rivers contribute to shape the geomorphologic features of lowland rivers and to establish the physical basis for an optimal set of ecosystem functions and related services to people. Through significant public funding, the hydro-morphological regimes of mountain rivers in the European Alps have been progressively altered over the last century, with the aim to provide a safe dwelling space, to boost transport, mobility and to support economic growth. We claim that the underlying planning weaknesses contribute to determine these inefficient resource allocations, since flood risk is still high and the ecosystem services are far from being optimal. Hence, with the overall aim to enhance sediment flux control and hazard risk mitigation in such heavily modified alpine streams, we propose a structured design workflow which guides the planner through system analysis and synthesis. As a first step the proposed workflow sets the relevant planning goals and assesses the protection structure functionality. Then a methodology is proposed to achieve the goals. This methodology consists in characterising the hydrologic basin of interest and the sediment availability and determining the sediment connectivity to channels. The focus is set on the detailed analysis of existing river cross sections where the sediment continuity is interrupted (e.g. slit and check dams). By retaining relevant sediment volumes these structures prevent the reactivation of hydro-morphological and associated ecological functionalities. Since their actual performance can be unsatisfying with respect to flood risk mitigation (e.g. mainly old structures), we introduce specific efficiency indicators as a support for the conceptual design stage to quantify effects related to sediment flux control and risk management. The proposed planning approach is then applied to the Gadria system (stream, slit dam, retention basin and culvert), located in South Tyrol, Italy. This case study shows that design excellence is needed to re-establish the sediment continuity, while keeping flood risk below acceptable levels. Moreover, the detailed hydraulic analyses highlight that the slit dam is oversized and it could be redesigned to improve sediment continuity and to reduce maintenance costs.

Inference and Prediction of Metabolic Network Fluxes

PubMed Central

Nikoloski, Zoran; Perez-Storey, Richard; Sweetlove, Lee J.

2015-01-01

In this Update, we cover the basic principles of the estimation and prediction of the rates of the many interconnected biochemical reactions that constitute plant metabolic networks. This includes metabolic flux analysis approaches that utilize the rates or patterns of redistribution of stable isotopes of carbon and other atoms to estimate fluxes, as well as constraints-based optimization approaches such as flux balance analysis. Some of the major insights that have been gained from analysis of fluxes in plants are discussed, including the functioning of metabolic pathways in a network context, the robustness of the metabolic phenotype, the importance of cell maintenance costs, and the mechanisms that enable energy and redox balancing at steady state. We also discuss methodologies to exploit 'omic data sets for the construction of tissue-specific metabolic network models and to constrain the range of permissible fluxes in such models. Finally, we consider the future directions and challenges faced by the field of metabolic network flux phenotyping. PMID:26392262

Nanostructuring superconductors by ion beams: A path towards materials engineering

NASA Astrophysics Data System (ADS)

Gerbaldo, Roberto; Ghigo, Gianluca; Gozzelino, Laura; Laviano, Francesco; Amato, Antonino; Rovelli, Alberto; Cherubini, Roberto

2013-07-01

The paper deals with nanostructuring of superconducting materials by means of swift heavy ion beams. The aim is to modify their structural, optical and electromagnetic properties in a controlled way, to provide possibility of making them functional for specific applications. Results are presented concerning flux pinning effects (implantation of columnar defects with nanosize cross section to enhance critical currents and irreversibility fields), confined flux-flow and vortex guidance, design of devices by locally tailoring the superconducting material properties, analysis of disorder-induced effects in multi-band superconductors. These studies were carried out on different kinds of superconducting samples, from single crystals to thin films, from superconducting oxides to magnesium diboride, to recently discovered iron-based superconductors.

Methane flux from mangrove sediments along the southwestern coast of Puerto Rico

DOE Office of Scientific and Technical Information (OSTI.GOV)

Sotomayor, D.; Corredor, J.E.; Morell, J.M.

1994-03-01

Although the sediments of coastal marine mangrove forests have been considered a minor source of atmospheric methane, these estimate have been based on sparse data from similar areas. We have gathered evidence that shows that external nutrient and freshwater loading in mangrove sediments may have a significant effect on methane flux. Experiments were performed to examine methane fluxes from anaerobic sediments in a mangrove forest subjected to secondary sewage effluents on the southwestern coast of Puerto Rico. Emission rates were measured in situ using a static chamber technique, and subsequent laboratory analysis of samples was by gas chromatography using amore » flame ionization detector. Results indicate that methane flux rates were lowest at the landward fringe nearest to the effluent discharge, higher in the seaward fringe occupied by red mangroves, and highest in the transition zone between black and red mangrove communities, with average values of 4 mg CH[sub 4] m[sup [minus]2] d[sup [minus]1], 42 mg CH[sub 4] m[sup [minus]2] d[sup [minus]1], and 82 mg CH[sub 4] m[sup [minus]2] d[sup [minus]1], respectively. Overall mean values show these sediments may emit as much as 40 times more methane than unimpacted pristine areas. Pneumatophores of Aviciennia germinans have been found to serve as conduits to the atmosphere for this gas. Fluctuating water level overlying the mangrove sediment is an important environmental factor controlling seasonal and interannual CH[sub 4] flux variations. Environmental controls such as freshwater inputs and increased nutrient loading influence in situ methane emissions from these environments. 34 refs., 3 figs., 3 tabs.« less

Climate variability and vadose zone controls on damping of transient recharge

USGS Publications Warehouse

Corona, Claudia R.; Gurdak, Jason J.; Dickinson, Jesse; Ferré, T.P.A.; Maurer, Edwin P.

2018-01-01

Increasing demand on groundwater resources motivates understanding of the controls on recharge dynamics so model predictions under current and future climate may improve. Here we address questions about the nonlinear behavior of flux variability in the vadose zone that may explain previously reported teleconnections between global-scale climate variability and fluctuations in groundwater levels. We use hundreds of HYDRUS-1D simulations in a sensitivity analysis approach to evaluate the damping depth of transient recharge over a range of periodic boundary conditions and vadose zone geometries and hydraulic parameters that are representative of aquifer systems of the conterminous United States (U.S). Although the models were parameterized based on U.S. aquifers, findings from this study are applicable elsewhere that have mean recharge rates between 3.65 and 730 mm yr–1. We find that mean infiltration flux, period of time varying infiltration, and hydraulic conductivity are statistically significant predictors of damping depth. The resulting framework explains why some periodic infiltration fluxes associated with climate variability dampen with depth in the vadose zone, resulting in steady-state recharge, while other periodic surface fluxes do not dampen with depth, resulting in transient recharge. We find that transient recharge in response to the climate variability patterns could be detected at the depths of water levels in most U.S. aquifers. Our findings indicate that the damping behavior of transient infiltration fluxes is linear across soil layers for a range of texture combinations. The implications are that relatively simple, homogeneous models of the vadose zone may provide reasonable estimates of the damping depth of climate-varying transient recharge in some complex, layered vadose zone profiles.

Metabolic flux analysis using 13C peptide label measurements

USDA-ARS?s Scientific Manuscript database

13C metabolic flux analysis (MFA) has become the experimental method of choice to investigate cellular metabolism. MFA has established flux maps of central metabolism for dozens of microbes, cell cultures, and plant seeds. Steady-state MFA utilizes isotopic labeling measurements of amino acids obtai...

Spatial Interpretation of Tower, Chamber and Modelled Terrestrial Fluxes in a Tropical Forest Plantation

NASA Astrophysics Data System (ADS)

Whidden, E.; Roulet, N.

2003-04-01

Interpretation of a site average terrestrial flux may be complicated in the presence of inhomogeneities. Inhomogeneity may invalidate the basic assumptions of aerodynamic flux measurement. Chamber measurement may miss or misinterpret important temporal or spatial anomalies. Models may smooth over important nonlinearities depending on the scale of application. Although inhomogeneity is usually seen as a design problem, many sites have spatial variance that may have a large impact on net flux, and in many cases a large homogeneous surface is unrealistic. The sensitivity and validity of a site average flux are investigated in the presence of an inhomogeneous site. Directional differences are used to evaluate the validity of aerodynamic methods and the computation of a site average tower flux. Empirical and modelling methods are used to interpret the spatial controls on flux. An ecosystem model, Ecosys, is used to assess spatial length scales appropriate to the ecophysiologic controls. A diffusion model is used to compare tower, chamber, and model data, by spatially weighting contributions within the tower footprint. Diffusion model weighting is also used to improve tower flux estimates by producing footprint averaged ecological parameters (soil moisture, soil temperature, etc.). Although uncertainty remains in the validity of measurement methods and the accuracy of diffusion models, a detailed spatial interpretation is required at an inhomogeneous site. Flux estimation between methods improves with spatial interpretation, showing the importance to an estimation of a site average flux. Small-scale temporal and spatial anomalies may be relatively unimportant to overall flux, but accounting for medium-scale differences in ecophysiological controls is necessary. A combination of measurements and modelling can be used to define the appropriate time and length scales of significant non-linearity due to inhomogeneity.

Genotypic variation in traits controlling carbon flux responses to precipitation in switchgrass

USDA-ARS?s Scientific Manuscript database

Fluxes of carbon in terrestrial ecosystems are key indicators of their productivity and carbon storage potential. Ecosystem fluxes will be impacted by climate change, especially changes in rainfall amount. Fluxes are also related to plant traits, including leaf photosynthesis (ACO2), leaf area ind...

Application of the Monte Carlo method to estimate doses due to neutron activation of different materials in a nuclear reactor

NASA Astrophysics Data System (ADS)

Ródenas, José

2017-11-01

All materials exposed to some neutron flux can be activated independently of the kind of the neutron source. In this study, a nuclear reactor has been considered as neutron source. In particular, the activation of control rods in a BWR is studied to obtain the doses produced around the storage pool for irradiated fuel of the plant when control rods are withdrawn from the reactor and installed into this pool. It is very important to calculate these doses because they can affect to plant workers in the area. The MCNP code based on the Monte Carlo method has been applied to simulate activation reactions produced in the control rods inserted into the reactor. Obtained activities are introduced as input into another MC model to estimate doses produced by them. The comparison of simulation results with experimental measurements allows the validation of developed models. The developed MC models have been also applied to simulate the activation of other materials, such as components of a stainless steel sample introduced into a training reactors. These models, once validated, can be applied to other situations and materials where a neutron flux can be found, not only nuclear reactors. For instance, activation analysis with an Am-Be source, neutrography techniques in both medical applications and non-destructive analysis of materials, civil engineering applications using a Troxler, analysis of materials in decommissioning of nuclear power plants, etc.

Airborne measurements of turbulent trace gas fluxes and analysis of eddy structure in the convective boundary layer over complex terrain

NASA Astrophysics Data System (ADS)

Hasel, M.; Kottmeier, Ch.; Corsmeier, U.; Wieser, A.

2005-03-01

Using the new high-frequency measurement equipment of the research aircraft DO 128, which is described in detail, turbulent vertical fluxes of ozone and nitric oxide have been calculated from data sampled during the ESCOMPTE program in the south of France. Based on airborne turbulence measurements, radiosonde data and surface energy balance measurements, the convective boundary layer (CBL) is examined under two different aspects. The analysis covers boundary-layer convection with respect to (i) the control of CBL depth by surface heating and synoptic scale influences, and (ii) the structure of convective plumes and their vertical transport of ozone and nitric oxides. The orographic structure of the terrain causes significant differences between planetary boundary layer (PBL) heights, which are found to exceed those of terrain height variations on average. A comparison of boundary-layer flux profiles as well as mean quantities over flat and complex terrain and also under different pollution situations and weather conditions shows relationships between vertical gradients and corresponding turbulent fluxes. Generally, NO x transports are directed upward independent of the terrain, since primary emission sources are located near the ground. For ozone, negative fluxes are common in the lower CBL in accordance with the deposition of O 3 at the surface. The detailed structure of thermals, which largely carry out vertical transports in the boundary layer, are examined with a conditional sampling technique. Updrafts mostly contain warm, moist and NO x loaded air, while the ozone transport by thermals alternates with the background ozone gradient. Evidence for handover processes of trace gases to the free atmosphere can be found in the case of existing gradients across the boundary-layer top. An analysis of the size of eddies suggests the possibility of some influence of the heterogeneous terrain in mountainous area on the length scales of eddies.

Climate-driven uncertainties in modeling terrestrial gross primary production: a site level to global-scale analysis.

PubMed

Barman, Rahul; Jain, Atul K; Liang, Miaoling

2014-05-01

We used a land surface model to quantify the causes and extents of biases in terrestrial gross primary production (GPP) due to the use of meteorological reanalysis datasets. We first calibrated the model using meteorology and eddy covariance data from 25 flux tower sites ranging from the tropics to the northern high latitudes and subsequently repeated the site simulations using two reanalysis datasets: NCEP/NCAR and CRUNCEP. The results show that at most sites, the reanalysis-driven GPP bias was significantly positive with respect to the observed meteorology-driven simulations. Notably, the absolute GPP bias was highest at the tropical evergreen tree sites, averaging up to ca. 0.45 kg C m(-2)  yr(-1) across sites (ca. 15% of site level GPP). At the northern mid-/high-latitude broadleaf deciduous and the needleleaf evergreen tree sites, the corresponding annual GPP biases were up to 20%. For the nontree sites, average annual biases of up to ca. 20-30% were simulated within savanna, grassland, and shrubland vegetation types. At the tree sites, the biases in short-wave radiation and humidity strongly influenced the GPP biases, while the nontree sites were more affected by biases in factors controlling water stress (precipitation, humidity, and air temperature). In this study, we also discuss the influence of seasonal patterns of meteorological biases on GPP. Finally, using model simulations for the global land surface, we discuss the potential impacts of site-level reanalysis-driven biases on the global estimates of GPP. In a broader context, our results can have important consequences on other terrestrial ecosystem fluxes (e.g., net primary production, net ecosystem production, energy/water fluxes) and reservoirs (e.g., soil carbon stocks). In a complementary study (Barman et al., ), we extend the present analysis for latent and sensible heat fluxes, thus consistently integrating the analysis of climate-driven uncertainties in carbon, energy, and water fluxes using a single modeling framework. © 2013 John Wiley & Sons Ltd.

Synergy between (13)C-metabolic flux analysis and flux balance analysis for understanding metabolic adaptation to anaerobiosis in E. coli.

PubMed

Chen, Xuewen; Alonso, Ana P; Allen, Doug K; Reed, Jennifer L; Shachar-Hill, Yair

2011-01-01

Genome-based Flux Balance Analysis (FBA) and steady-state isotopic-labeling-based Metabolic Flux Analysis (MFA) are complimentary approaches to predicting and measuring the operation and regulation of metabolic networks. Here, genome-derived models of Escherichia coli (E. coli) metabolism were used for FBA and ¹³C-MFA analyses of aerobic and anaerobic growths of wild-type E. coli (K-12 MG1655) cells. Validated MFA flux maps reveal that the fraction of maintenance ATP consumption in total ATP production is about 14% higher under anaerobic (51.1%) than aerobic conditions (37.2%). FBA revealed that an increased ATP utilization is consumed by ATP synthase to secrete protons from fermentation. The TCA cycle is shown to be incomplete in aerobically growing cells and submaximal growth is due to limited oxidative phosphorylation. An FBA was successful in predicting product secretion rates in aerobic culture if both glucose and oxygen uptake measurement were constrained, but the most-frequently predicted values of internal fluxes yielded from sampling the feasible space differ substantially from MFA-derived fluxes. © 2010 Elsevier Inc. All rights reserved.

PFA toolbox: a MATLAB tool for Metabolic Flux Analysis.

PubMed

Morales, Yeimy; Bosque, Gabriel; Vehí, Josep; Picó, Jesús; Llaneras, Francisco

2016-07-11

Metabolic Flux Analysis (MFA) is a methodology that has been successfully applied to estimate metabolic fluxes in living cells. However, traditional frameworks based on this approach have some limitations, particularly when measurements are scarce and imprecise. This is very common in industrial environments. The PFA Toolbox can be used to face those scenarios. Here we present the PFA (Possibilistic Flux Analysis) Toolbox for MATLAB, which simplifies the use of Interval and Possibilistic Metabolic Flux Analysis. The main features of the PFA Toolbox are the following: (a) It provides reliable MFA estimations in scenarios where only a few fluxes can be measured or those available are imprecise. (b) It provides tools to easily plot the results as interval estimates or flux distributions. (c) It is composed of simple functions that MATLAB users can apply in flexible ways. (d) It includes a Graphical User Interface (GUI), which provides a visual representation of the measurements and their uncertainty. (e) It can use stoichiometric models in COBRA format. In addition, the PFA Toolbox includes a User's Guide with a thorough description of its functions and several examples. The PFA Toolbox for MATLAB is a freely available Toolbox that is able to perform Interval and Possibilistic MFA estimations.

Constant Switching Frequency DTC for Matrix Converter Fed Speed Sensorless Induction Motor Drive

NASA Astrophysics Data System (ADS)

Mir, Tabish Nazir; Singh, Bhim; Bhat, Abdul Hamid

2018-05-01

The paper presents a constant switching frequency scheme for speed sensorless Direct Torque Control (DTC) of Matrix Converter fed Induction Motor Drive. The use of matrix converter facilitates improved power quality on input as well as motor side, along with Input Power Factor control, besides eliminating the need for heavy passive elements. Moreover, DTC through Space Vector Modulation helps in achieving a fast control over the torque and flux of the motor, with added benefit of constant switching frequency. A constant switching frequency aids in maintaining desired power quality of AC mains current even at low motor speeds, and simplifies input filter design of the matrix converter, as compared to conventional hysteresis based DTC. Further, stator voltage estimation from sensed input voltage, and subsequent stator (and rotor) flux estimation is done. For speed sensorless operation, a Model Reference Adaptive System is used, which emulates the speed dependent rotor flux equations of the induction motor. The error between conventionally estimated rotor flux (reference model) and the rotor flux estimated through the adaptive observer is processed through PI controller to generate the rotor speed estimate.

Monitoring autophagic flux by an improved tandem fluorescent-tagged LC3 (mTagRFP-mWasabi-LC3) reveals that high-dose rapamycin impairs autophagic flux in cancer cells.

PubMed

Zhou, Cuihong; Zhong, Wu; Zhou, Jun; Sheng, Fugeng; Fang, Ziyuan; Wei, Yue; Chen, Yingyu; Deng, Xiaoyan; Xia, Bin; Lin, Jian

2012-08-01

Monitoring autophagic flux is important for the analysis of autophagy. Tandem fluorescent-tagged LC3 (mRFP-EGFP-LC3) is a convenient assay for monitoring autophagic flux based on different pH stability of EGFP and mRFP fluorescent proteins. However, it has been reported that there is still weak fluorescence of EGFP in acidic environments (pH between 4 and 5) or acidic lysosomes. So it is possible that autolysosomes are labeled with yellow signals (GFP(+)RFP(+) puncta), which results in misinterpreting autophagic flux results. Therefore, it is desirable to choose a monomeric green fluorescent protein that is more acid sensitive than EGFP in the assay of autophagic flux. Here, we report on an mTagRFP-mWasabi-LC3 reporter, in which mWasabi is more acid sensitive than EGFP and has no fluorescence in acidic lysosomes. Meanwhile, mTagRFP-mWasabi-LC3ΔG was constructed as the negative control for this assay. Compared with mRFP-EGFP-LC3, our results showed that this reporter is more sensitive and accurate in detecting the accumulation of autophagosomes and autolysosomes. Using this reporter, we find that high-dose rapamycin (30 μM) will impair autophagic flux, inducing many more autophagosomes than autolysosomes in HeLa cells, while low-dose rapamycin (500 nM) has an opposite effect. In addition, other chemical autophagy inducers (cisplatin, staurosporine and Z18) also elicit much more autophagosomes at high doses than those at low doses. Our results suggest that the dosage of chemical autophagy inducers would obviously influence autophagic flux in cells.

AC/DC current ratio in a current superimposition variable flux reluctance machine

NASA Astrophysics Data System (ADS)

Kohara, Akira; Hirata, Katsuhiro; Niguchi, Noboru; Takahara, Kazuaki

2018-05-01

We have proposed a current superimposition variable flux reluctance machine for traction motors. The torque-speed characteristics of this machine can be controlled by increasing or decreasing the DC current. In this paper, we discuss an AC/DC current ratio in the current superimposition variable flux reluctance machine. The structure and control method are described, and the characteristics are computed using FEA in several AC/DC ratios.

Apparatus for high flux photocatalytic pollution control using a rotating fluidized bed reactor

DOEpatents

Tabatabaie-Raissi, Ali; Muradov, Nazim Z.; Martin, Eric

2003-06-24

An apparatus based on optimizing photoprocess energetics by decoupling of the process energy efficiency from the DRE for target contaminants. The technique is applicable to both low- and high-flux photoreactor design and scale-up. An apparatus for high-flux photocatalytic pollution control is based on the implementation of multifunctional metal oxide aerogels and other media in conjunction with a novel rotating fluidized particle bed reactor.

Soil Greenhouse Gas Fluxes in a Pacific Northwest Douglas-Fir Forest: Results from a Soil Fertilization and Biochar Addition Experiment

NASA Astrophysics Data System (ADS)

Hawthorne, I.; Johnson, M. S.; Jassal, R. S.; Black, T. A.

2013-12-01

Rising atmospheric concentrations of greenhouse gases (GHGs), carbon dioxide (CO2), methane (CH4) and nitrous oxide (N2O), linked to current climate change has stimulated a scientific response to provide robust accounting of sources and sinks of these gases. There is an urgent need to increase awareness of land management impacts on GHG flux dynamics to facilitate the development of management strategies that minimize GHG emissions. Biochar (pyrolyzed organic matter) has been identified as a strategy to reduce net GHG fluxes from soils. This is due to its potential to sequester large amounts of carbon for significant time periods, as well as its modification of biotic and abiotic soil conditions, which in turn can alter the GHG balance. This study describes the effect of biochar and urea-N application on soil surface CO2, CH4 and N2O fluxes in a Pacific Northwest Douglas-fir forest on Vancouver Island, BC, Canada (49o 52' N, 125o 20' W). We used a randomized complete-block design with four replicates of the following treatments: i) control, ii) 5 Mg ha-1 biochar surface application, iii) 200 kg N ha-1 urea pellets surface application, and iv) 5 Mg ha-1 biochar plus 200 kg N ha-1 urea. Soil GHG flux measurements were made biweekly for two years beginning in September 2011 using a non-steady-state non-flow through chamber technique. Biochar was added in February 2012, with urea applied in March 2013. A collar made from 21-cm diameter x 11-cm long PVC piping was installed in each of the 16 plots between two large trees on the forest floor, penetrating the organic layer to the mineral soil at the 5-8 cm depth. A clear Plexiglas lid, equipped with a 10-cm long vent tube and 9-V fan, was placed on each collar when making measurements, with 20-mL samples of chamber headspace air collected at 0, 3, 6, 9 and 12 min using a medical syringe with 21-gauge needle inserted through a rubber septum in the chamber lid. Samples were injected into and transported in previously evacuated 12-mL vials and analyzed by gas chromatography. Chamber headspace GHG mixing ratios vs. time data were fit to linear and exponential models in R (Version 2.14.0) and fluxes were calculated. Results showed high variability in GHG fluxes over time in all treatments. Higher CO2 emissions were observed during early summer (119 μg CO2 m-2 s-1 in the control plots), decreasing with drought (19 μg CO2 m-2 s-1 in the control plots). CH4 uptake by soil increased during summer months from -0.004 μg CH4 m-2 s-1 to -0.089 μg CH4 m-2 s-1 in the control plots, in response to drying conditions in the upper soil profile. N2O was both consumed and emitted in all treatments, with fluxes ranging from -0.0009 to 0.0019 μg N2O m-2 s-1 in the control plots. Analysis of variance indicated that there were significant differences in GHG fluxes between treatments over time. We also investigated the potential effects of large volume headspace removal, and H2O vapour saturation leading to a dilution effect by using a closed-path infra-red gas analyzer with an inline humidity sensor.

The Impact of Prior Biosphere Models in the Inversion of Global Terrestrial CO2 Fluxes by Assimilating OCO-2 Retrievals

NASA Technical Reports Server (NTRS)

Philip, Sajeev; Johnson, Matthew S.

2018-01-01

Atmospheric mixing ratios of carbon dioxide (CO2) are largely controlled by anthropogenic emissions and biospheric fluxes. The processes controlling terrestrial biosphere-atmosphere carbon exchange are currently not fully understood, resulting in terrestrial biospheric models having significant differences in the quantification of biospheric CO2 fluxes. Atmospheric transport models assimilating measured (in situ or space-borne) CO2 concentrations to estimate "top-down" fluxes, generally use these biospheric CO2 fluxes as a priori information. Most of the flux inversion estimates result in substantially different spatio-temporal posteriori estimates of regional and global biospheric CO2 fluxes. The Orbiting Carbon Observatory 2 (OCO-2) satellite mission dedicated to accurately measure column CO2 (XCO2) allows for an improved understanding of global biospheric CO2 fluxes. OCO-2 provides much-needed CO2 observations in data-limited regions facilitating better global and regional estimates of "top-down" CO2 fluxes through inversion model simulations. The specific objectives of our research are to: 1) conduct GEOS-Chem 4D-Var assimilation of OCO-2 observations, using several state-of-the-science biospheric CO2 flux models as a priori information, to better constrain terrestrial CO2 fluxes, and 2) quantify the impact of different biospheric model prior fluxes on OCO-2-assimilated a posteriori CO2 flux estimates. Here we present our assessment of the importance of these a priori fluxes by conducting Observing System Simulation Experiments (OSSE) using simulated OCO-2 observations with known "true" fluxes.

Investigation of the low flux servo-controlled limit of a co-phased interferometer

NASA Astrophysics Data System (ADS)

Damé, Luc; Derrien, Marc; Kozlowski, Mathias; Merdjane, Mohamed

2018-04-01

This paper, "Investigation of the low flux servo-controlled limit of a co-phased interferometer," was presented as part of International Conference on Space Optics—ICSO 1997, held in Toulouse, France.

Metabolic flux analysis of the mixotrophic metabolisms in the green sulfur bacterium Chlorobaculum tepidum.

PubMed

Feng, Xueyang; Tang, Kuo-Hsiang; Blankenship, Robert E; Tang, Yinjie J

2010-12-10

The photosynthetic green sulfur bacterium Chlorobaculum tepidum assimilates CO(2) and organic carbon sources (acetate or pyruvate) during mixotrophic growth conditions through a unique carbon and energy metabolism. Using a (13)C-labeling approach, this study examined biosynthetic pathways and flux distributions in the central metabolism of C. tepidum. The isotopomer patterns of proteinogenic amino acids revealed an alternate pathway for isoleucine synthesis (via citramalate synthase, CimA, CT0612). A (13)C-assisted flux analysis indicated that carbons in biomass were mostly derived from CO(2) fixation via three key routes: the reductive tricarboxylic acid (RTCA) cycle, the pyruvate synthesis pathway via pyruvate:ferredoxin oxidoreductase, and the CO(2)-anaplerotic pathway via phosphoenolpyruvate carboxylase. During mixotrophic growth with acetate or pyruvate as carbon sources, acetyl-CoA was mainly produced from acetate (via acetyl-CoA synthetase) or citrate (via ATP citrate lyase). Pyruvate:ferredoxin oxidoreductase converted acetyl-CoA and CO(2) to pyruvate, and this growth-rate control reaction is driven by reduced ferredoxin generated during phototrophic growth. Most reactions in the RTCA cycle were reversible. The relative fluxes through the RTCA cycle were 80∼100 units for mixotrophic cultures grown on acetate and 200∼230 units for cultures grown on pyruvate. Under the same light conditions, the flux results suggested a trade-off between energy-demanding CO(2) fixation and biomass growth rate; C. tepidum fixed more CO(2) and had a higher biomass yield (Y(X/S), mole carbon in biomass/mole substrate) in pyruvate culture (Y(X/S) = 9.2) than in acetate culture (Y(X/S) = 6.4), but the biomass growth rate was slower in pyruvate culture than in acetate culture.

Discovering the Importance of Bi-directional Water Fluxes in Leaves

NASA Astrophysics Data System (ADS)

Kayler, Z. E.; Saurer, M.; Siegwolf, R.

2007-12-01

The stable isotope ratio 18O/16O is used for constraining climate change models, partitioning ecosystem water fluxes and for studies of plant ecophysiology. Leaf water enrichment is an essential starting point for each of these applications. In order to obtain a complete picture of the role leaf water plays, not only the 18O values from leaf water but also the signature of transpired water must be accurately predicted for plants under varying environmental conditions. We used a novel chamber approach using highly depleted water (-330 ‰) as a vapor source to leaves of the velvet bean (Mucuna pruriens). We used a Walz gas exchange system consisting of a chamber that is controlled for humidity, light, and temperature. Water and carbon dioxide fluxes were measured by an infrared gas analyzer and chamber vapor was collected in cold traps chilled to - 60°C. Three leaves were collected after 2 hours to insure isotopic steady-state followed by leaf water extraction and isotope analysis. From this experiment we were able to measure the outward flux of soil source water and the inward flux of ambient vapor over a range of environments that varied in relative humidity (80%, 45%, 20%), light (50, 1000 μmolm-2s-1) and CO2 (50, 800 ppm). Leaf water isotopic values were below the source water values reflecting the influx of the labeled vapor. The degree to which leaf water values were depleted was strongly related to the relative humidity. The Craig-Gordon model overestimated depletion of leaf water under high relative humidity and predictions were improved with the Péclet correction. However, our initial analysis indicates that these models may not fully account for stomatal conductance in predicting leaf water isotopic values.

THE MEASUREMENT AND USE OF CONTAMINANT FLUX FOR PERFORMANCE ASSESSMENT OF DNAPL REMEDIATION

EPA Science Inventory

A review is presented of both mass flux as a DNAPL remedial performance metric and reduction in mass flux as a remedial performance objective at one or more control planes down gradient of DNAPL source areas. The use of mass flux to assess remedial performance has been proposed ...

Metabolic flux ratio analysis and cell staining suggest the existence of C4 photosynthesis in Phaeodactylum tricornutum.

PubMed

Huang, A; Liu, L; Zhao, P; Yang, C; Wang, G C

2016-03-01

Mechanisms for carbon fixation via photosynthesis in the diatom Phaeodactylum tricornutum Bohlin were studied recently but there remains a long-standing debate concerning the occurrence of C4 photosynthesis in this species. A thorough investigation of carbon metabolism and the evidence for C4 photosynthesis based on organelle partitioning was needed. In this study, we identified the flux ratios between C3 and C4 compounds in P. tricornutum using (13)C-labelling metabolic flux ratio analysis, and stained cells with various cell-permeant fluorescent probes to investigate the likely organelle partitioning required for single-cell C4 photosynthesis. Metabolic flux ratio analysis indicated the C3/C4 exchange ratios were high. Cell staining indicated organelle partitioning required for single-cell C4 photosynthesis might exist in P. tricornutum. The results of (13)C-labelling metabolic flux ratio analysis and cell staining suggest single-cell C4 photosynthesis exists in P. tricornutum. This study provides insights into photosynthesis patterns of P. tricornutum and the evidence for C4 photosynthesis based on (13)C-labelling metabolic flux ratio analysis and organelle partitioning. © 2015 The Society for Applied Microbiology.

Continuous-flow centrifugation to collect suspended sediment for chemical analysis

USGS Publications Warehouse

Conn, Kathleen E.; Dinicola, Richard S.; Black, Robert W.; Cox, Stephen E.; Sheibley, Richard W.; Foreman, James R.; Senter, Craig A.; Peterson, Norman T.

2016-12-22

Recent advances in suspended-sediment monitoring tools and surrogate technologies have greatly improved the ability to quantify suspended-sediment concentrations and to estimate daily, seasonal, and annual suspended-sediment fluxes from rivers to coastal waters. However, little is known about the chemical composition of suspended sediment, and how it may vary spatially between water bodies and temporally within a single system owing to climate, seasonality, land use, and other natural and anthropogenic drivers. Many water-quality contaminants, such as organic and inorganic chemicals, nutrients, and pathogens, preferentially partition in sediment rather than water. Suspended sediment-bound chemical concentrations may be undetected during analysis of unfiltered water samples, owing to small water sample volumes and analytical limitations. Quantification of suspended sediment‑bound chemical concentrations is needed to improve estimates of total chemical concentrations, chemical fluxes, and exposure levels of aquatic organisms and humans in receiving environments. Despite these needs, few studies or monitoring programs measure the chemical composition of suspended sediment, largely owing to the difficulty in consistently obtaining samples of sufficient quality and quantity for laboratory analysis.A field protocol is described here utilizing continuous‑flow centrifugation for the collection of suspended sediment for chemical analysis. The centrifuge used for development of this method is small, lightweight, and portable for the field applications described in this protocol. Project scoping considerations, deployment of equipment and system layout options, and results from various field and laboratory quality control experiments are described. The testing confirmed the applicability of the protocol for the determination of many inorganic and organic chemicals sorbed on suspended sediment, including metals, pesticides, polycyclic aromatic hydrocarbons, and polychlorinated biphenyls. The particle-size distribution of the captured sediment changes to a more fine-grained sample during centrifugation, and the necessity to account for this change when extrapolating chemical concentrations on the centrifuged sediment sample to the environmental water system is discussed.The data produced using this method will help eliminate a data gap of suspended sediment-bound chemical concentrations, and will support management decisions, such as chemical source-control efforts or in-stream restoration activities. When coupled with streamflow and sediment flux data, it will improve estimates of riverine chemical fluxes, and will aid in assessing the importance and impacts of suspended sediment-bound chemicals to downstream freshwater and coastal marine ecosystems.

Characterizing shallow secondary clarifier performance where conventional flux theory over-estimates allowable solids loading rate.

PubMed

Daigger, Glen T; Siczka, John S; Smith, Thomas F; Frank, David A; McCorquodale, J A

The performance characteristics of relatively shallow (3.3 and 3.7 m sidewater depth in 30.5 m diameter) activated sludge secondary clarifiers were extensively evaluated during a 2-year testing program at the City of Akron Water Reclamation Facility (WRF), Ohio, USA. Testing included hydraulic and solids loading stress tests, and measurement of sludge characteristics (zone settling velocity (ZSV), dispersed and flocculated total suspended solids), and the results were used to calibrate computational fluid dynamic (CFD) models of the various clarifiers tested. The results demonstrated that good performance could be sustained at surface overflow rates in excess of 3 m/h, as long as the clarifier influent mixed liquor suspended solids (MLSS) concentration was controlled to below critical values. The limiting solids loading rate (SLR) was significantly lower than the value predicted by conventional solids flux analysis based on the measured ZSV/MLSS relationship. CFD analysis suggested that this resulted because mixed liquor entering the clarifier was being directed into the settled sludge blanket, diluting it and also creating a 'thin' concentration sludge blanket that overlays the thicker concentration sludge blanket typically expected. These results indicate the need to determine the allowable SLR for shallow clarifiers using approaches other than traditional solids flux analysis. A combination of actual testing and CFD analyses are demonstrated here to be effective in doing so.

Estimates of CO2 fluxes over the city of Cape Town, South Africa, through Bayesian inverse modelling

NASA Astrophysics Data System (ADS)

Nickless, Alecia; Rayner, Peter J.; Engelbrecht, Francois; Brunke, Ernst-Günther; Erni, Birgit; Scholes, Robert J.

2018-04-01

We present a city-scale inversion over Cape Town, South Africa. Measurement sites for atmospheric CO2 concentrations were installed at Robben Island and Hangklip lighthouses, located downwind and upwind of the metropolis. Prior estimates of the fossil fuel fluxes were obtained from a bespoke inventory analysis where emissions were spatially and temporally disaggregated and uncertainty estimates determined by means of error propagation techniques. Net ecosystem exchange (NEE) fluxes from biogenic processes were obtained from the land atmosphere exchange model CABLE (Community Atmosphere Biosphere Land Exchange). Uncertainty estimates were based on the estimates of net primary productivity. CABLE was dynamically coupled to the regional climate model CCAM (Conformal Cubic Atmospheric Model), which provided the climate inputs required to drive the Lagrangian particle dispersion model. The Bayesian inversion framework included a control vector where fossil fuel and NEE fluxes were solved for separately.Due to the large prior uncertainty prescribed to the NEE fluxes, the current inversion framework was unable to adequately distinguish between the fossil fuel and NEE fluxes, but the inversion was able to obtain improved estimates of the total fluxes within pixels and across the domain. The median of the uncertainty reductions of the total weekly flux estimates for the inversion domain of Cape Town was 28 %, but reach as high as 50 %. At the pixel level, uncertainty reductions of the total weekly flux reached up to 98 %, but these large uncertainty reductions were for NEE-dominated pixels. Improved corrections to the fossil fuel fluxes would be possible if the uncertainty around the prior NEE fluxes could be reduced. In order for this inversion framework to be operationalised for monitoring, reporting, and verification (MRV) of emissions from Cape Town, the NEE component of the CO2 budget needs to be better understood. Additional measurements of Δ14C and δ13C isotope measurements would be a beneficial component of an atmospheric monitoring programme aimed at MRV of CO2 for any city which has significant biogenic influence, allowing improved separation of contributions from NEE and fossil fuel fluxes to the observed CO2 concentration.

Characterization and Remediation of Contaminated Sites:Modeling, Measurement and Assessment

NASA Astrophysics Data System (ADS)

Basu, N. B.; Rao, P. C.; Poyer, I. C.; Christ, J. A.; Zhang, C. Y.; Jawitz, J. W.; Werth, C. J.; Annable, M. D.; Hatfield, K.

2008-05-01

The complexity of natural systems makes it impossible to estimate parameters at the required level of spatial and temporal detail. Thus, it becomes necessary to transition from spatially distributed parameters to spatially integrated parameters that are capable of adequately capturing the system dynamics, without always accounting for local process behavior. Contaminant flux across the source control plane is proposed as an integrated metric that captures source behavior and links it to plume dynamics. Contaminant fluxes were measured using an innovative technology, the passive flux meter at field sites contaminated with dense non-aqueous phase liquids or DNAPLs in the US and Australia. Flux distributions were observed to be positively or negatively correlated with the conductivity distribution, depending on the source characteristics of the site. The impact of partial source depletion on the mean contaminant flux and flux architecture was investigated in three-dimensional complex heterogeneous settings using the multiphase transport code UTCHEM and the reactive transport code ISCO3D. Source mass depletion reduced the mean contaminant flux approximately linearly, while the contaminant flux standard deviation reduced proportionally with the mean (i.e., coefficient of variation of flux distribution is constant with time). Similar analysis was performed using data from field sites, and the results confirmed the numerical simulations. The linearity of the mass depletion-flux reduction relationship indicates the ability to design remediation systems that deplete mass to achieve target reduction in source strength. Stability of the flux distribution indicates the ability to characterize the distributions in time once the initial distribution is known. Lagrangian techniques were used to predict contaminant flux behavior during source depletion in terms of the statistics of the hydrodynamic and DNAPL distribution. The advantage of the Lagrangian techniques lies in their small computation time and their inclusion of spatially integrated parameters that can be measured in the field using tracer tests. Analytical models that couple source depletion to plume transport were used for optimization of source and plume treatment. These models are being used for the development of decision and management tools (for DNAPL sites) that consider uncertainty assessments as an integral part of the decision-making process for contaminated site remediation.

ATR LEU Fuel and Burnable Absorber Neutronics Performance Optimization by Fuel Meat Thickness Variation

DOE Office of Scientific and Technical Information (OSTI.GOV)

G. S. Chang

2007-09-01

The Advanced Test Reactor (ATR) is a high power density and high neutron flux research reactor operating in the United States. Powered with highly enriched uranium (HEU), the ATR has a maximum thermal power rating of 250 MWth. Because of the large test volumes located in high flux areas, the ATR is an ideal candidate for assessing the feasibility of converting an HEU driven reactor to a low-enriched core. The present work investigates the necessary modifications and evaluates the subsequent operating effects of this conversion. A detailed plate-by-plate MCNP ATR 1/8th core model was developed and validated for a fuelmore » cycle burnup comparison analysis. Using the current HEU U 235 enrichment of 93.0 % as a baseline, an analysis can be performed to determine the low-enriched uranium (LEU) density and U-235 enrichment required in the fuel meat to yield an equivalent K-eff between the HEU core and the LEU core versus effective full power days (EFPD). The MCNP ATR 1/8th core model will be used to optimize the U-235 loading in the LEU core, such that the differences in K-eff and heat flux profile between the HEU and LEU core can be minimized. The depletion methodology MCWO was used to calculate K-eff versus EFPDs in this paper. The MCWO-calculated results for the LEU cases with foil (U-10Mo) types demonstrated adequate excess reactivity such that the K-eff versus EFPDs plot is similar to the reference ATR HEU case. Each HEU fuel element contains 19 fuel plates with a fuel meat thickness of 0.508 mm. In this work, the proposed LEU (U-10Mo) core conversion case with a nominal fuel meat thickness of 0.508 mm and the same U-235 enrichment (15.5 wt%) can be used to optimize the radial heat flux profile by varying the fuel plate thickness from 0.254 to 0.457 mm at the inner 4 fuel plates (1-4) and outer 4 fuel plates (16-19). In addition, a 0.7g of burnable absorber Boron-10 was added in the inner and outer plates to reduce the initial excess reactivity, and the inner/outer heat flux more effectively. The optimized LEU relative radial fission heat flux profile is bounded by the reference ATR HEU case. However, to demonstrate that the LEU core fuel cycle performance can meet the Updated Final Safety Analysis Report (UFSAR) safety requirements, additional studies will be necessary to evaluate and compare safety parameters such as void reactivity and Doppler coefficients, control components worth (outer shim control cylinders, safety rods and regulating rod), and shutdown margins between the HEU and LEU cores.« less

Measurements of Impurity Particle Transport Associated with Drift-Wave Turbulence in MST

NASA Astrophysics Data System (ADS)

Nishizawa, Takashi; Nornberg, Mark; Boguski, John; Craig, Darren; den Hartog, Daniel; Pueschel, M. J.; Sarff, John; Terry, Paul; Williams, Zach; Xing, Zichuan

2017-10-01

Understanding and controlling impurity transport in a toroidal magnetized plasma is one of the critical issues that need to be addressed in order to achieve controlled fusion. Gyrokinetic modeling shows turbulence can drive impurity transport, but direct measurements of the turbulent flux have not been made. Particle balance is typically used to infer the presence of turbulent impurity transport. We report, for the first time in a toroidal plasma, direct measurements of turbulence-driven impurity transport. Trapped electron mode (TEM) turbulence appears in MST plasmas when MHD tearing fluctuations are suppressed. Impurity ion-Doppler spectroscopy is used to correlate impurity density and radial velocity fluctuations associated with TEM. Small Doppler shifts associated with the radial velocity fluctuations (rms 1km/s) are resolved with the use of a new linearized spectrum correlation analysis method, which improves the rejection of Poisson noise. The method employs frequency-domain correlation analysis to expose the fluctuation and transport spectrum. The C+ 2 impurity transport velocity driven by turbulence is found to be 48m/s (inward), which is sufficiently large to impact an impurity flux balance in MST improved-confinement plasmas. This work is supported by the US DOE.

Study on magnetic circuit of moving magnet linear compressor

NASA Astrophysics Data System (ADS)

Xia, Ming; Chen, Xiaoping; Chen, Jun

2015-05-01

The moving magnet linear compressors are very popular in the tactical miniature stirling cryocoolers. The magnetic circuit of LFC3600 moving magnet linear compressor, manufactured by Kunming institute of Physics, was studied in this study. Three methods of the analysis theory, numerical calculation and experiment study were applied in the analysis process. The calculated formula of magnetic reluctance and magnetomotive force were given in theoretical analysis model. The magnetic flux density and magnetic flux line were analyzed in numerical analysis model. A testing method was designed to test the magnetic flux density of the linear compressor. When the piston of the motor was in the equilibrium position, the value of the magnetic flux density was at the maximum of 0.27T. The results were almost equal to the ones from numerical analysis.

Transcript abundance on its own cannot be used to infer fluxes in central metabolism

DOE PAGES

Schwender, Jorg; Konig, Christina; Klapperstuck, Matthias; ...

2014-11-28

An attempt has been made to define the extent to which metabolic flux in central plant metabolism is reflected by changes in the transcriptome and metabolome, based on an analysis of in vitro cultured immature embryos of two oilseed rape (Brassica napus) accessions which contrast for seed lipid accumulation. Metabolic flux analysis (MFA) was used to constrain a flux balance metabolic model which included 671 biochemical and transport reactions within the central metabolism. This highly confident flux information was eventually used for comparative analysis of flux vs. transcript (metabolite). Metabolite profiling succeeded in identifying 79 intermediates within the central metabolism,more » some of which differed quantitatively between the two accessions and displayed a significant shift corresponding to flux. An RNA-Seq based transcriptome analysis revealed a large number of genes which were differentially transcribed in the two accessions, including some enzymes/proteins active in major metabolic pathways. With a few exceptions, differential activity in the major pathways (glycolysis, TCA cycle, amino acid, and fatty acid synthesis) was not reflected in contrasting abundances of the relevant transcripts. The conclusion was that transcript abundance on its own cannot be used to infer metabolic activity/fluxes in central plant metabolism. Lastly, this limitation needs to be borne in mind in evaluating transcriptome data and designing metabolic engineering experiments.« less

SUMOFLUX: A Generalized Method for Targeted 13C Metabolic Flux Ratio Analysis

PubMed Central

Kogadeeva, Maria

2016-01-01

Metabolic fluxes are a cornerstone of cellular physiology that emerge from a complex interplay of enzymes, carriers, and nutrients. The experimental assessment of in vivo intracellular fluxes using stable isotopic tracers is essential if we are to understand metabolic function and regulation. Flux estimation based on 13C or 2H labeling relies on complex simulation and iterative fitting; processes that necessitate a level of expertise that ordinarily preclude the non-expert user. To overcome this, we have developed SUMOFLUX, a methodology that is broadly applicable to the targeted analysis of 13C-metabolic fluxes. By combining surrogate modeling and machine learning, we trained a predictor to specialize in estimating flux ratios from measurable 13C-data. SUMOFLUX targets specific flux features individually, which makes it fast, user-friendly, applicable to experimental design and robust in terms of experimental noise and exchange flux magnitude. Collectively, we predict that SUMOFLUX's properties realistically pave the way to high-throughput flux analyses. PMID:27626798

Diffusional flux of CO2 through snow: Spatial and temporal variability among alpine-subalpine sites

Treesearch

Richard A. Sommerfeld; William J. Massman; Robert C. Musselman

1996-01-01

Three alpine and three subalpine sites were monitored for up to 4 years to acquire data on the temporal and spatial variability of CO2 flux through snowpacks. We conclude that the snow formed a passive cap which controlled the concentration of CO2 at the snow-soil interface, while the flux of CO2 into the atmosphere was controlled by CO2 production in the soil....

Surface Flux Measurements at King Sejong Station in West Antarctica

NASA Astrophysics Data System (ADS)

Choi, T.; Lee, B.; Lee, H.; Shim, J.

2004-12-01

The Antarctic Peninsula is important in terms of global warming research due to pronounced increase of air temperature over the last century. The first eddy covariance system was established and turbulent fluxes of heat, water vapor, CO2 and momentum have been measured at King Sejong Station (62 \\deg 13øØS, 58 \\deg 47øØW) located in the northern edge of the Antarctic Peninsula since December in 2002. Our objectives are to better understand the interactions between the Antarctic land surface and the atmosphere and to test the feasibility of the long-term operation of eddy covariance system under extreme weather conditions. Various lichens cover the study area and the dominant species is Usnea fasciata-Himantormia. Based on the analyses on turbulent statistics such as integral turbulence characteristics of vertical velocity (w) and heat (T), stationarity test and investigation of correlation coefficient, they follow the Monin-Obukhov similarity and eddy covariance flux data were reliable. About 50 % of total retrieved sensible heat flux data could be used for further analysis. We will report on seasonal variations of energy and mass fluxes and environmental variables. In addition, factors controlling these fluxes will be presented. Acknowledgement: This study was supported by ¡rEnvironmental Monitoring on Human Impacts at the King Sejong Station, Antarctica¡_ (Project PP04102 of Korea Polar Research Institute) and ¡rEco-technopia 21 project¡_ (Ministry of Environment of Korea).

Edge turbulence and divertor heat flux width simulations of Alcator C-Mod discharges using an electromagnetic two-fluid model

NASA Astrophysics Data System (ADS)

Chen, B.; Xu, X. Q.; Xia, T. Y.; Porkolab, M.; Edlund, E.; LaBombard, B.; Terry, J.; Hughes, J. W.; Mao, S. F.; Ye, M. Y.; Wan, Y. X.

2017-11-01

The BOUT++ code has been exploited in order to improve the understanding of the role of turbulent modes in controlling edge transport and resulting scaling of the scrape-off layer (SOL) heat flux width. For the C-Mod enhanced D_α (EDA) H-mode discharges, BOUT++ six-field two-fluid nonlinear simulations show a reasonable agreement of upstream turbulence and divertor target heat flux behavior: (a) the simulated quasi-coherent modes show consistent characteristics of the frequency versus poloidal wave number spectra of the electromagnetic fluctuations when compared with experimental measurements: frequencies are around 60-120 kHz (experiment: about 70-110 kHz), k_θ are around 2.0 cm-1 which is similar to the phase contrast imaging data; (b) linear spectrum analysis is consistent with the nonlinear phase relationship calculation which indicates the dominance of resistive-ballooning modes and drift-Alfven wave instabilities; (c) the SOL heat flux width λq versus current I p scaling is reproduced by turbulent transport: the simulations yield similar λq to experimental measurements within a factor of 2. However the magnitudes of divertor heat fluxes can be varied, depending on the physics models, sources and sinks, sheath boundary conditions, or flux limiting coefficient; (d) Simple estimate by the ‘2-point model’ for λq is consistent with simulation. Moreover, blobby turbulent spreading is confirmed for these relatively high B p shots.

CcpN Controls Central Carbon Fluxes in Bacillus subtilis▿ ‡

PubMed Central

Tännler, Simon; Fischer, Eliane; Le Coq, Dominique; Doan, Thierry; Jamet, Emmanuel; Sauer, Uwe; Aymerich, Stéphane

2008-01-01

The transcriptional regulator CcpN of Bacillus subtilis has been recently characterized as a repressor of two gluconeogenic genes, gapB and pckA, and of a small noncoding regulatory RNA, sr1, involved in arginine catabolism. Deletion of ccpN impairs growth on glucose and strongly alters the distribution of intracellular fluxes, rerouting the main glucose catabolism from glycolysis to the pentose phosphate (PP) pathway. Using transcriptome analysis, we show that during growth on glucose, gapB and pckA are the only protein-coding genes directly repressed by CcpN. By quantifying intracellular fluxes in deletion mutants, we demonstrate that derepression of pckA under glycolytic condition causes the growth defect observed in the ccpN mutant due to extensive futile cycling through the pyruvate carboxylase, phosphoenolpyruvate carboxykinase, and pyruvate kinase. Beyond ATP dissipation via this cycle, PckA activity causes a drain on tricarboxylic acid cycle intermediates, which we show to be the main reason for the reduced growth of a ccpN mutant. The high flux through the PP pathway in the ccpN mutant is modulated by the flux through the alternative glyceraldehyde-3-phosphate dehydrogenases, GapA and GapB. Strongly increased concentrations of intermediates in upper glycolysis indicate that GapB overexpression causes a metabolic jamming of this pathway and, consequently, increases the relative flux through the PP pathway. In contrast, derepression of sr1, the third known target of CcpN, plays only a marginal role in ccpN mutant phenotypes. PMID:18586936

Soil-atmosphere N2O and CH4 exchanges was suppressed by litter layer in a subtropical secondary forest

NASA Astrophysics Data System (ADS)

Cui, J. J.; Lai, D. Y. F.

2016-12-01

Forest soil has a great potential in affecting future climate change through biogeochemical cycling and exchanging greenhouse gases (GHGs) with the atmosphere. As a proxy of changing atmospheric CO2 concentration, enhanced litter production arising from CO2 fertilization can affect soil GHG fluxes and induce feedbacks to the climate system. However, these litter-soil- atmosphere interactions remain unclear, especially in subtropical forests. In this study, we carried out static chamber measurements and field manipulations in a subtropical secondary forest in Hong Kong over one year to investigate the temporal variations and controls, as well as the effects of changing litter amounts on soil-atmosphere GHG fluxes. Our results show distinct seasonal pattern of GHG fluxes and soil parameters over the study period. While CO2 flux did not respond significantly to litter manipulation, regression analysis indicates that CO2 flux was regulated by soil temperature and soil moisture. Litter reduction stimulated mean N2O emissions by 105%, and the positive effect was most pronounced during the hot-humid season from May to October. On the other hand, litter addition was found to reduce CH4 uptake by 32%. Our findings suggest that the presence of litter might serve a physical barrier for gas diffusion. It is suggested that the biogeochemical feedback arising from litterfall should be taken into account in simulating the response of forest GHG fluxes to future global change.

Meteorological factors controlling year-to-year variations in the spring onset of snow melt over the Arctic sea ice

NASA Astrophysics Data System (ADS)

Maksimovich, E.

2010-09-01

The spring onset of snow melt on the Arctic sea ice shows large inter-annual variability. Surface melt triggers positive feedback mechanisms between the albedo, snow properties and thickness, as well as sea ice thickness. Hence, it is important to quantify the factors contributing to inter-annual variability of the melt onset (MO) in various parts of the Arctic Ocean. Meteorological factors controlling surface heat budget and surface melting/freezing are the shortwave and longwave radiative fluxes and the turbulent fluxes of sensible and latent heat. These fluxes depend on the weather conditions, including the radiative impact of clouds, heat advection and wind speed. We make use of SSM/I-based MO time series (Markus, Miller and Stroeve) and the ECMWF ERA Interim reanalysis on the meteorological conditions and surface fluxes, both data sets spanning the period 1989-2008 and covering recent years with a rapid sea ice decline. The advantage is that SSM/I-based MO time series are independent of the ERA-Interim data. Our objective is to investigate if there exists a physically consistent and statistically significant relationship between MO timing and corresponding meteorological conditions. Results based on the regression analysis between the MO timing and seasonal anomalies of surface longwave radiative fluxes reveal strong relationships. Synoptic scale (3-14 days) anomalies in downward longwave radiation are essential in the Western Arctic. Regarding the longer history (20-60 days) the distinct contribution from the downward longwave radiative fluxes is captured within the whole study region. Positive anomalies in the downward longwave radiation dominate over the simultaneous negative anomalies in the downward shortwave radiation. The anomalies in downward radiative fluxes are consistent with the total column water vapor, sea level pressure and 10-m wind direction. Sensible and latent heat fluxes affect surface melt timing in the Beaufort Sea and in the Atlantic sector of the Arctic Basin. Stronger winds strengthen the relationship between the turbulent fluxes and the MO timing. The turbulent surface fluxes in spring are relatively weak, of the order of 1-10W/m2, compared to the downward shortwave and longwave radiative fluxes, which are of the order of 100-150W/m2. As soon as data uncertainties are comparable to the anomaly in turbulent fluxes, statistical relationships found between MO timing and preceding anomaly in turbulent fluxes do not necessarily prove their reasonal-causal relationship. This joint study of SSM/I-based MO record and the ERA-Interim meteorological fields region-wide with a focus on the seasonal transition demonstrates their consistency in time and space. Such result could be regarded as an important indicator that both data sets have the appropriate performance of the surface state in the Arctic Ocean. Nevertheless, an important additional effort is needed for to resolve better the cloud radiative and boundary layer turbulent processes over the sea ice.

Memoryless control of boundary concentrations of diffusing particles.

PubMed

Singer, A; Schuss, Z; Nadler, B; Eisenberg, R S

2004-12-01

Flux between regions of different concentration occurs in nearly every device involving diffusion, whether an electrochemical cell, a bipolar transistor, or a protein channel in a biological membrane. Diffusion theory has calculated that flux since the time of Fick (1855), and the flux has been known to arise from the stochastic behavior of Brownian trajectories since the time of Einstein (1905), yet the mathematical description of the behavior of trajectories corresponding to different types of boundaries is not complete. We consider the trajectories of noninteracting particles diffusing in a finite region connecting two baths of fixed concentrations. Inside the region, the trajectories of diffusing particles are governed by the Langevin equation. To maintain average concentrations at the boundaries of the region at their values in the baths, a control mechanism is needed to set the boundary dynamics of the trajectories. Different control mechanisms are used in Langevin and Brownian simulations of such systems. We analyze models of controllers and derive equations for the time evolution and spatial distribution of particles inside the domain. Our analysis shows a distinct difference between the time evolution and the steady state concentrations. While the time evolution of the density is governed by an integral operator, the spatial distribution is governed by the familiar Fokker-Planck operator. The boundary conditions for the time dependent density depend on the model of the controller; however, this dependence disappears in the steady state, if the controller is of a renewal type. Renewal-type controllers, however, produce spurious boundary layers that can be catastrophic in simulations of charged particles, because even a tiny net charge can have global effects. The design of a nonrenewal controller that maintains concentrations of noninteracting particles without creating spurious boundary layers at the interface requires the solution of the time-dependent Fokker-Planck equation with absorption of outgoing trajectories and a source of ingoing trajectories on the boundary (the so called albedo problem).

Speed Sensorless Induction Motor Drives for Electrical Actuators: Schemes, Trends and Tradeoffs

NASA Technical Reports Server (NTRS)

Elbuluk, Malik E.; Kankam, M. David

1997-01-01

For a decade, induction motor drive-based electrical actuators have been under investigation as potential replacement for the conventional hydraulic and pneumatic actuators in aircraft. Advantages of electric actuator include lower weight and size, reduced maintenance and operating costs, improved safety due to the elimination of hazardous fluids and high pressure hydraulic and pneumatic actuators, and increased efficiency. Recently, the emphasis of research on induction motor drives has been on sensorless vector control which eliminates flux and speed sensors mounted on the motor. Also, the development of effective speed and flux estimators has allowed good rotor flux-oriented (RFO) performance at all speeds except those close to zero. Sensorless control has improved the motor performance, compared to the Volts/Hertz (or constant flux) controls. This report evaluates documented schemes for speed sensorless drives, and discusses the trends and tradeoffs involved in selecting a particular scheme. These schemes combine the attributes of the direct and indirect field-oriented control (FOC) or use model adaptive reference systems (MRAS) with a speed-dependent current model for flux estimation which tracks the voltage model-based flux estimator. Many factors are important in comparing the effectiveness of a speed sensorless scheme. Among them are the wide speed range capability, motor parameter insensitivity and noise reduction. Although a number of schemes have been proposed for solving the speed estimation, zero-speed FOC with robustness against parameter variations still remains an area of research for speed sensorless control.

First Biogenic VOC Flux Results from the UCI Fluxtron Plant Chamber Facility

NASA Astrophysics Data System (ADS)

Seco, R.; Gu, D.; Joo, E.; Nagalingam, S.; Aristizabal, B. H.; Basu, C.; Kim, S.; Guenther, A. B.

2017-12-01

Atmospheric biogenic volatile organic compounds (BVOCs) have key environmental, ecological and biological roles, and can influence atmospheric chemistry, secondary aerosol formation, and regional climate. Quantifying BVOC emission rates and their impact on atmospheric chemistry is one of the greatest challenges with respect to predicting future air pollution in the context of a changing climate. A new facility, the UCI Fluxtron, has been developed at the Department of Earth System Science at the University of California Irvine to study the response of BVOC emissions to extreme weather and pollution stress. The UCI Fluxtron is designed for automated, continuous measurement of plant physiology and multi-modal BVOC chemical analysis from multiple plants. It consists of two controlled-environment walk-in growth chambers that contain several plant enclosures, a gas make-up system to precisely control the composition (e.g., H2O, CO2, O3 and VOC concentrations) of the air entering each enclosure. A sample manifold with automated inlet switching is used for measurements with in-situ and real-time VOC analysis instruments: H2O, CO2 fluxes can be measured continually with an infrared gas analyzer (IRGA) and BVOCs with a proton transfer reaction -time of flight- mass spectrometer (PTR-TOF-MS). Offline samples can also be taken via adsorbent cartridges to be analyzed in a thermal desorption gas chromatograph coupled to a TOF-MS detector. We present the first results of H2O, CO2 and BVOC fluxes, including the characterization and testing of the Fluxtron system. For example, measurements of young dragon tree (Paulownia elongata) individuals using whole-plant enclosures.

NASA's Carbon Monitoring System Flux-Pilot Project: A Multi-Component Analysis System for Carbon-Cycle Research and Monitoring

NASA Technical Reports Server (NTRS)

Pawson, S.; Gunson, M.; Potter, C.; Jucks, K.

2012-01-01

The importance of greenhouse gas increases for climate motivates NASA s observing strategy for CO2 from space, including the forthcoming Orbiting Carbon Observatory (OCO-2) mission. Carbon cycle monitoring, including attribution of atmospheric concentrations to regional emissions and uptake, requires a robust modeling and analysis infrastructure to optimally extract information from the observations. NASA's Carbon-Monitoring System Flux-Pilot Project (FPP) is a prototype for such analysis, combining a set of unique tools to facilitate analysis of atmospheric CO2 along with fluxes between the atmosphere and the terrestrial biosphere or ocean. NASA's analysis system is unique, in that it combines information and expertise from the land, oceanic, and atmospheric branches of the carbon cycle and includes some estimates of uncertainty. Numerous existing space-based missions provide information of relevance to the carbon cycle. This study describes the components of the FPP framework, assessing the realism of computed fluxes, thus providing the basis for research and monitoring applications. Fluxes are computed using data-constrained terrestrial biosphere models and physical ocean models, driven by atmospheric observations and assimilating ocean-color information. Use of two estimates provides a measure of uncertainty in the fluxes. Along with inventories of other emissions, these data-derived fluxes are used in transport models to assess their consistency with atmospheric CO2 observations. Closure is achieved by using a four-dimensional data assimilation (inverse) approach that adjusts the terrestrial biosphere fluxes to make them consistent with the atmospheric CO2 observations. Results will be shown, illustrating the year-to-year variations in land biospheric and oceanic fluxes computed in the FPP. The signals of these surface-flux variations on atmospheric CO2 will be isolated using forward modeling tools, which also incorporate estimates of transport error. The results will be discussed in the context of interannual variability of observed atmospheric CO2 distributions.

Optimized Structures for Low-Profile Phase Change Thermal Spreaders

NASA Astrophysics Data System (ADS)

Sharratt, Stephen Andrew

Thin, low-profile phase change thermal spreaders can provide cooling solutions for some of today's most pressing heat flux dissipation issues. These thermal issues are only expected to increase as future electronic circuitry requirements lead to denser and potentially 3D chip packaging. Phase change based heat spreaders, such as heat pipes or vapor chambers, can provide a practical solution for effectively dissipating large heat fluxes. This thesis reports a comprehensive study of state-of-the-art capillary pumped wick structures using computational modeling, micro wick fabrication, and experimental analysis. Modeling efforts focus on predicting the shape of the liquid meniscus inside a complicated 3D wick structure. It is shown that this liquid shape can drastically affect the wick's thermal resistance. In addition, knowledge of the liquid meniscus shape allows for the computation of key parameters such as permeability and capillary pressure which are necessary for predicting the maximum heat flux. After the model is validated by comparison to experimental results, the wick structure is optimized so as to decrease overall wick thermal resistance and increase the maximum capillary limited heat flux before dryout. The optimized structures are then fabricated out of both silicon and copper using both traditional and novel micro-fabrication techniques. The wicks are made super-hydrophilic using chemical and thermal oxidation schemes. A sintered monolayer of Cu particles is fabricated and analyzed as well. The fabricated wick structures are experimentally tested for their heat transfer performance inside a well controlled copper vacuum chamber. Heat fluxes as high as 170 W/cm2 are realized for Cu wicks with structure heights of 100 μm. The structures optimized for both minimized thermal resistance and high liquid supply ability perform much better than their non-optimized counterparts. The super-hydrophilic oxidation scheme is found to drastically increase the maximum heat flux and decrease thermal resistance. This research provides key insights as to how to optimize heat pipe structures to minimize thermal resistance and increase maximum heat flux. These thin wick structures can also be combined with a thicker liquid supply layer so that thin, low-resistance evaporator layers can be constructed and higher heat fluxes realized. The work presented in this thesis can be used to aid in the development of high-performance phase change thermal spreaders, allowing for temperature control of a variety of powerful electronic components.

Reflection mass spectrometry technique for monitoring and controlling composition during molecular beam epitaxy

DOEpatents

Brennan, T.M.; Hammons, B.E.; Tsao, J.Y.

1992-12-15

A method for on-line accurate monitoring and precise control of molecular beam epitaxial growth of Groups III-III-V or Groups III-V-V layers in an advanced semiconductor device incorporates reflection mass spectrometry. The reflection mass spectrometry is responsive to intentional perturbations in molecular fluxes incident on a substrate by accurately measuring the molecular fluxes reflected from the substrate. The reflected flux is extremely sensitive to the state of the growing surface and the measurements obtained enable control of newly forming surfaces that are dynamically changing as a result of growth. 3 figs.

Reflection mass spectrometry technique for monitoring and controlling composition during molecular beam epitaxy

DOEpatents

Brennan, Thomas M.; Hammons, B. Eugene; Tsao, Jeffrey Y.

1992-01-01

A method for on-line accurate monitoring and precise control of molecular beam epitaxial growth of Groups III-III-V or Groups III-V-V layers in an advanced semiconductor device incorporates reflection mass spectrometry. The reflection mass spectrometry is responsive to intentional perturbations in molecular fluxes incident on a substrate by accurately measuring the molecular fluxes reflected from the substrate. The reflected flux is extremely sensitive to the state of the growing surface and the measurements obtained enable control of newly forming surfaces that are dynamically changing as a result of growth.

Greenhouse Gas Emissions from Reservoir Water Surfaces: A ...

EPA Pesticide Factsheets

Collectively, reservoirs are an important anthropogenic source of greenhouse gases (GHGs) to the atmosphere. Attempts to model reservoir GHG fluxes, however, have been limited by inconsistencies in methodological approaches and data availability. An increase in the number of published reservoir GHG flux estimates during the last 15 years warrants a comprehensive analysis of the magnitude and potential controls on these fluxes. Here we synthesize worldwide reservoir CH4, CO2, and N2O emission data and estimate that GHG emissions from reservoirs account for 80.2 Tmol CO2 equivalents yr-1, thus constituting approximately 5% of anthropogenic radiative forcing. The majority (93%) of these emissions are from CH4, and mainly in the form of bubbles. While age and latitude have historically been linked to reservoir GHG emissions, we found that factors related to reservoir nutrient status and rainfall were better predictors. In particular, nutrient-rich eutrophic reservoirs were found to have an order of magnitude higher per-area CH4 fluxes, on average, than their nutrient-poor oligotrophic counterparts. Therefore, management measures to reduce reservoir eutrophication may result in an important co-benefit, the reduction of GHG emissions to the atmosphere. Greenhouse gas emissions (GHG)

Effect of membrane flux and dialyzer biocompatibility on survival in end-stage diabetic nephropathy.

PubMed

Götz, Angela K; Böger, Carsten A; Popal, Massoud; Banas, Bernhard; Krämer, Bernhard K

2008-01-01

We examined the effects of dialyzer membrane flux and biocompatibility on mortality in diabetic dialysis patients. We enrolled 402 prevalent chronic hemodialysis patients from 30 centers in Germany in 1999 for a prospective observational study until 2003. We compared 2 groups in post hoc analysis: high-flux (HF, n = 166) versus low-flux (LF, n = 236) membrane, and high biocompatibility (HB, n = 300) versus low biocompatibility (LB, n = 102). All-cause mortality (ACM) was the primary endpoint. Death causes were the secondary endpoints. Multivariate Cox regression analysis showed no significant difference in risk for ACM with respect to flux (hazard ratio, HR, 0.79; p = 0.08; ACM 63% in HF vs. 70% in LF dialysis) and biocompatibility level (HR 1.00; p = 0.98; ACM 67% for HB vs. 66% for LB). The multivariate analysis of different causes of death did not reveal any outcome differences dependent on flux and biocompatibility level apart from a slightly better cumulative survival regarding the death cause 'infectious' in our HF dialysis group (HR 0.48; p = 0.07, Kaplan-Meier analysis p = 0.03). Our data indicate that mortality of hemodialysis patients with type-2 diabetic nephropathy is influenced neither by dialyzer flux level nor by biocompatibility. Copyright 2008 S. Karger AG, Basel.

DOE Office of Scientific and Technical Information (OSTI.GOV)

Schwender, Jorg; Konig, Christina; Klapperstuck, Matthias

An attempt has been made to define the extent to which metabolic flux in central plant metabolism is reflected by changes in the transcriptome and metabolome, based on an analysis of in vitro cultured immature embryos of two oilseed rape (Brassica napus) accessions which contrast for seed lipid accumulation. Metabolic flux analysis (MFA) was used to constrain a flux balance metabolic model which included 671 biochemical and transport reactions within the central metabolism. This highly confident flux information was eventually used for comparative analysis of flux vs. transcript (metabolite). Metabolite profiling succeeded in identifying 79 intermediates within the central metabolism,more » some of which differed quantitatively between the two accessions and displayed a significant shift corresponding to flux. An RNA-Seq based transcriptome analysis revealed a large number of genes which were differentially transcribed in the two accessions, including some enzymes/proteins active in major metabolic pathways. With a few exceptions, differential activity in the major pathways (glycolysis, TCA cycle, amino acid, and fatty acid synthesis) was not reflected in contrasting abundances of the relevant transcripts. The conclusion was that transcript abundance on its own cannot be used to infer metabolic activity/fluxes in central plant metabolism. Lastly, this limitation needs to be borne in mind in evaluating transcriptome data and designing metabolic engineering experiments.« less

Influence of nutrient fluxes on phytoplankton community and harmful algal blooms along the coastal waters of southeastern Arabian Sea

NASA Astrophysics Data System (ADS)

Kumar, P. Sathish; Kumaraswami, M.; Rao, G. Durga; Ezhilarasan, P.; Sivasankar, R.; Rao, V. Ranga; Ramu, K.

2018-06-01

The seasonal variation in phytoplankton composition as well as the influencing factors on phytoplankton community were examined for the coastal waters of Kochi, southeastern Arabian Sea during 2015. The elevated flux of total nitrogen (TN) and silica (Si) during the summer monsoon (SM) induced the harmful algal blooms (HABs) of Scrippsiella trochoidea (11.9 × 105 cells L-1) and Karenia mikimotoi (6 × 105 cells L-1) near the inlets of Kochi estuary. Blooms of S. trochoidea were recorded for the first time in the Indian waters. The satellite data of chlorophyll-a showed the significant correlation with insitu observations of phytoplankton abundance and provided a better understanding of the spatio-temporal distribution. The canonical correspondence analysis indicates that the increased TN and Si fluxes and lower temperature induced the HABs during the SM. The reduction in the load of N and Si in the coastal waters of southeastern Arabian Sea is essential for controlling the HABs.

Phototransduction Influences Metabolic Flux and Nucleotide Metabolism in Mouse Retina.

PubMed

Du, Jianhai; Rountree, Austin; Cleghorn, Whitney M; Contreras, Laura; Lindsay, Ken J; Sadilek, Martin; Gu, Haiwei; Djukovic, Danijel; Raftery, Dan; Satrústegui, Jorgina; Kanow, Mark; Chan, Lawrence; Tsang, Stephen H; Sweet, Ian R; Hurley, James B

2016-02-26

Production of energy in a cell must keep pace with demand. Photoreceptors use ATP to maintain ion gradients in darkness, whereas in light they use it to support phototransduction. Matching production with consumption can be accomplished by coupling production directly to consumption. Alternatively, production can be set by a signal that anticipates demand. In this report we investigate the hypothesis that signaling through phototransduction controls production of energy in mouse retinas. We found that respiration in mouse retinas is not coupled tightly to ATP consumption. By analyzing metabolic flux in mouse retinas, we also found that phototransduction slows metabolic flux through glycolysis and through intermediates of the citric acid cycle. We also evaluated the relative contributions of regulation of the activities of α-ketoglutarate dehydrogenase and the aspartate-glutamate carrier 1. In addition, a comprehensive analysis of the retinal metabolome showed that phototransduction also influences steady-state concentrations of 5'-GMP, ribose-5-phosphate, ketone bodies, and purines. © 2016 by The American Society for Biochemistry and Molecular Biology, Inc.

Optimal tracers for parallel labeling experiments and 13C metabolic flux analysis: A new precision and synergy scoring system.

PubMed

Crown, Scott B; Long, Christopher P; Antoniewicz, Maciek R

2016-11-01

13 C-Metabolic flux analysis ( 13 C-MFA) is a widely used approach in metabolic engineering for quantifying intracellular metabolic fluxes. The precision of fluxes determined by 13 C-MFA depends largely on the choice of isotopic tracers and the specific set of labeling measurements. A recent advance in the field is the use of parallel labeling experiments for improved flux precision and accuracy. However, as of today, no systemic methods exist for identifying optimal tracers for parallel labeling experiments. In this contribution, we have addressed this problem by introducing a new scoring system and evaluating thousands of different isotopic tracer schemes. Based on this extensive analysis we have identified optimal tracers for 13 C-MFA. The best single tracers were doubly 13 C-labeled glucose tracers, including [1,6- 13 C]glucose, [5,6- 13 C]glucose and [1,2- 13 C]glucose, which consistently produced the highest flux precision independent of the metabolic flux map (here, 100 random flux maps were evaluated). Moreover, we demonstrate that pure glucose tracers perform better overall than mixtures of glucose tracers. For parallel labeling experiments the optimal isotopic tracers were [1,6- 13 C]glucose and [1,2- 13 C]glucose. Combined analysis of [1,6- 13 C]glucose and [1,2- 13 C]glucose labeling data improved the flux precision score by nearly 20-fold compared to widely use tracer mixture 80% [1- 13 C]glucose +20% [U- 13 C]glucose. Copyright © 2016 International Metabolic Engineering Society. Published by Elsevier Inc. All rights reserved.

Short-term effect of nitrogen addition on nitric oxide emissions from an alpine meadow in the Tibetan Plateau.

PubMed

Gao, Yongheng; Ma, Xingxing; Cooper, David J

2016-06-01

Little information is available on nitric oxide (NO) fluxes from alpine ecosystems. We measured NO fluxes in control and nitrogen (N) addition (NH4NO3, 6 g N m(-2) year(-1)) plots from early June through October 2013 in an alpine meadow on the Tibetan Plateau, China. During the sample period, NO fluxes varied from -0.71 to 3.12 ug m(-2) h(-1) and -0.46 to 7.54 ug m(-2) h(-1) for control and N treatment plots. The mean NO emission in N addition plots (1.68 ug m(-2) h(-1)) was 2.15 times higher than the control plots (0.78 ug m(-2) h(-1)), indicating that alpine meadows may be a source of atmospheric NO, and N additions stimulated NO flux. A positive correlation was found between NO flux and soil temperature, water-filled pore space (WFPS), nitrate (NO3 (-)-N) content but no correlation with soil ammonium (NH4 (+)-N). These results suggest that denitrification is a principal process producing NO flux from alpine meadows.

Partitioning Carbon Dioxide and Water Vapor Fluxes Using Correlation Analysis

USDA-ARS?s Scientific Manuscript database

Partitioning of eddy covariance flux measurements is routinely done to quantify the contributions of separate processes to the overall fluxes. Measurements of carbon dioxide fluxes represent the difference between gross ecosystem photosynthesis and total respiration, while measurements of water vapo...

Performance of hemodialysis with novel medium cut-off dialyzers

PubMed Central

Lyko, Raphael; Nilsson, Lars-Göran; Beck, Werner; Amdahl, Michael; Lechner, Petra; Schneider, Andreas; Wanner, Christoph; Rosenkranz, Alexander R.; Krieter, Detlef H.

2017-01-01

Background. Compared to high-flux dialysis membranes, novel medium cut-off (MCO) membranes show greater permeability for larger middle molecules. Methods. In two prospective, open-label, controlled, randomized, crossover pilot studies, 39 prevalent hemodialysis (HD) patients were studied in four dialysis treatments as follows: study 1, three MCO prototype dialyzers (AA, BB and CC with increasing permeability) and one high-flux dialyzer in HD; and study 2, two MCO prototype dialyzers (AA and BB) in HD and high-flux dialyzers in HD and hemodiafiltration (HDF). Primary outcome was lambda free light chain (λFLC) overall clearance. Secondary outcomes included overall clearances and pre-to-post-reduction ratios of middle and small molecules, and safety of MCO HD treatments. Results. MCO HD provided greater λFLC overall clearance [least square mean (standard error)] as follows: study 1: MCO AA 8.5 (0.54), MCO BB 11.3 (0.51), MCO CC 15.0 (0.53) versus high-flux HD 3.6 (0.51) mL/min; study 2: MCO AA 10.0 (0.58), MCO BB 12.5 (0.57) versus high-flux HD 4.4 (0.57) and HDF 6.2 (0.58) mL/min. Differences between MCO and high-flux dialyzers were consistently significant in mixed model analysis (each P < 0.001). Reduction ratios of λFLC were greater for MCO. Clearances of α1-microglobulin, complement factor D, kappa FLC (κFLC) and myoglobin were generally greater with MCO than with high-flux HD and similar to or greater than clearances with HDF. Albumin loss was moderate with MCO, but greater than with high-flux HD and HDF. Conclusions. MCO HD removes a wide range of middle molecules more effectively than high-flux HD and even exceeds the performance of high-volume HDF for large solutes, particularly λFLC. PMID:27587605

Effects of Mesoscale Eddies in the Active Mixed Layer: Test of the Parametrisation in Eddy Resolving Simulations

NASA Technical Reports Server (NTRS)

Luneva, M. V.; Clayson, C. A.; Dubovikov, Mikhail

2015-01-01

In eddy resolving simulations, we test a mixed layer mesoscale parametrisation, developed recently by Canuto and Dubovikov [Ocean Model., 2011, 39, 200-207]. With no adjustable parameters, the parametrisation yields the horizontal and vertical mesoscale fluxes in terms of coarse-resolution fields and eddy kinetic energy (EKE). We compare terms of the parametrisation diagnosed from coarse-grained fields with the eddy mesoscale fluxes diagnosed directly from the high resolution model. An expression for the EKE in terms of mean fields has also been found to get a closed parametrisation in terms of the mean fields only. In 40 numerical experiments we simulated two types of flows: idealised flows driven by baroclinic instabilities only, and more realistic flows, driven by wind and surface fluxes as well as by inflow-outflow. The diagnosed quasi-instantaneous horizontal and vertical mesoscale buoyancy fluxes (averaged over 1-2 degrees and 10 days) demonstrate a strong scatter typical for turbulent flows, however, the fluxes are positively correlated with the parametrisation with higher (0.5-0.74) correlations at the experiments with larger baroclinic radius Rossby. After being averaged over 3-4 months, diffusivities diagnosed from the eddy resolving simulations are consistent with the parametrisation for a broad range of parameters. Diagnosed vertical mesoscale fluxes restratify mixed layer and are in a good agreement with the parametrisation unless vertical turbulent mixing in the upper layer becomes strong enough in comparison with mesoscale advection. In the latter case, numerical simulations demonstrate that the deviation of the fluxes from the parametrisation is controlled by dimensionless parameter estimating the ratio of vertical turbulent mixing term to mesoscale advection. An analysis using a modified omega-equation reveals that the effects of the vertical mixing of vorticity is responsible for the two-three fold amplification of vertical mesoscale flux. Possible physical mechanisms, responsible for the amplification of vertical mesoscale flux are discussed.

A magnetic bearing control approach using flux feedback

NASA Technical Reports Server (NTRS)

Groom, Nelson J.

1989-01-01

A magnetic bearing control approach using flux feedback is described and test results for a laboratory model magnetic bearing actuator are presented. Test results were obtained using a magnetic bearing test fixture, which is also described. The magnetic bearing actuator consists of elements similar to those used in a laboratory test model Annular Momentum Control Device (AMCD).

Analysis of BF Hearth Reasonable Cooling System Based on the Water Dynamic Characteristics

NASA Astrophysics Data System (ADS)

Zuo, Haibin; Jiao, Kexin; Zhang, Jianliang; Li, Qian; Wang, Cui

A rational cooling water system is the assurance for long campaign life of blast furnace. In the paper, the heat transfer of different furnace period and different furnace condition based on the water quality characteristics were analysed, and the reason of the heat flux over the normal from the hydrodynamics was analysed. The results showed that, the vapour-film and scale existence significantly influenced the hearth heat transfer, which accelerated the brick lining erosion. The water dynamic characteristics of the parallel inner pipe or among the pipes were the main reason for the abnormal heat flux and film boiling. As to the reasonable cooling water flow, the gas film and the scale should be controlled and the energy saving should be considered.

Nonequilibrium Energy Transfer at Nanoscale: A Unified Theory from Weak to Strong Coupling

NASA Astrophysics Data System (ADS)

Wang, Chen; Ren, Jie; Cao, Jianshu

2015-07-01

Unraveling the microscopic mechanism of quantum energy transfer across two-level systems provides crucial insights to the optimal design and potential applications of low-dimensional nanodevices. Here, we study the non-equilibrium spin-boson model as a minimal prototype and develop a fluctuation-decoupled quantum master equation approach that is valid ranging from the weak to the strong system-bath coupling regime. The exact expression of energy flux is analytically established, which dissects the energy transfer as multiple boson processes with even and odd parity. Our analysis provides a unified interpretation of several observations, including coherence-enhanced heat flux and negative differential thermal conductance. The results will have broad implications for the fine control of energy transfer in nano-structural devices.

Development of a low-cost double rotor axial flux motor with soft magnetic composite and ferrite permanent magnet materials

NASA Astrophysics Data System (ADS)

Liu, Chengcheng; Zhu, Jianguo; Wang, Youhua; Guo, Youguang; Lei, Gang; Liu, Xiaojing

2015-05-01

This paper proposes a low-cost double rotor axial flux motor (DRAFM) with low cost soft magnetic composite (SMC) core and ferrite permanent magnets (PMs). The topology and operating principle of DRAFM and design considerations for best use of magnetic materials are presented. A 905 W 4800 rpm DRAFM is designed for replacing the high cost NdFeB permanent magnet synchronous motor (PMSM) in a refrigerator compressor. By using the finite element method, the electromagnetic parameters and performance of the DRAFM operated under the field oriented control scheme are calculated. Through the analysis, it is shown that that the SMC and ferrite PM materials can be good candidates for low-cost electric motor applications.

Seasonal and Intra-annual Controls on CO 2 Flux in Arctic Alaska

DOE Office of Scientific and Technical Information (OSTI.GOV)

Oechel, Walter; Kalhori, Aram

2015-12-01

In order to advance the understanding of the patterns and controls on the carbon budget in the Arctic region, San Diego State University has maintained eddy covariance flux towers at three sites in Arctic Alaska, starting in 1997.

Partitioning of sublimation and evaporation from Lake Bonney using water vapor isotope and latent heat fluxes

NASA Astrophysics Data System (ADS)

Bellagamba, A. W.; Berkelhammer, M. B.; Winslow, L.; Peter, D.; Myers, K. F.

2017-12-01

The landscapes of the McMurdo Dry Valleys in Antarctica are characterized by a series of frozen lakes. Although the conditions in this region are severe, the lakes share common characteristics with lakes at glacial termini elsewhere. Geochemical and geomorphological evidence suggest these lakes have experienced large historical changes indicative of changes water balances. While part of these shifts in lake volume arise from changes in glacial inflow, they likely also reflect changes in the latent heat flux from the lake surfaces. Here we present a joint analysis of the stable isotopic ratio of surface ice/water and the water vapor flux over Dry Valley frozen lakes to ascertain the processes controlling water losses from the lake surfaces. We compare the isotopic ratio of the latent heat flux with the surface water isotopes to derive a fractionation factor associated with latent flux. This data is then used to provide insight into how much of the water vapor flux is sublimated versus evaporated, as well as how the sublimation and evaporative components of the flux change with synoptic weather. We used a Picarro L2130-I isotopic water analyzer to measure humidity and the isotopic ratio of water vapor at three heights over Lake Bonney in Taylor Valley, Antarctica and used the flux-gradient approach to convert the isotopic ratio of the vapor to an "isoflux". An on-site meteorological station recorded temperature, relative humidity and wind direction/intensity at two different heights above the lake and an infrared radiometer recorded lake skin temperature. These data were used to calculate the sensible and latent heat fluxes. The fractionation factor was close to 0, which indicates that sublimation was the primary component of the flux although evaporation became increasingly prominent following a katabatic wind event. The results suggest this technique could be an effective tool to study the sensitivity of latent heat fluxes to weather here and in other similar environments. The trial run performed at Lake Bonney in November-December 2016 was performed as part of the ongoing LTER (Long Term Ecological Research) project at the McMurdo Dry Valleys and a second experiment will be performed in January 2018.

Contribution of trees and grasses to ecosystem fluxes of water, carbon, and energy throughout the seasons under different nutrient availability

NASA Astrophysics Data System (ADS)

El-Madany, T. S.; Migliavacca, M.; Perez-Priego, O.; Luo, Y.; Moreno, G.; Carrara, A.; Kolle, O.; Reichstein, M.

2017-12-01

In semi-arid savanna type ecosystems, the carbon and water cycle are closely related to each other. Water availability is the main driver for the development and phenology of the vegetation, especially for annual plants. Depending on tree density, nutrient availability and species the contribution of the tree- and the herbaceous layer to ecosystem fluxes can vary substantially. We present data from an ecosystem scale nutrient manipulation experiment within a Mediterranean savanna type ecosystem which is used for cattle. The footprint areas of two out of three ecosystem eddy co-variance (EC) towers were fertilized with nitrogen (NT) and nitrogen plus phosphorous (NPT) while the third one served as the control tower (CT). At each ecosystem EC-tower an additional herbaceous layer tower was installed that only sampled fluxes from the herbaceous layer. Under certain assumptions flux differences between the ecosystem EC and the herbaceous layer EC systems can be considered as the contribution of the trees to the ecosystem fluxes. Based on phenology of the herbaceous layer estimated through green-chromatic-coordinates from digital imagery the year was separated into spring, senescence, regreening, and winter. The focus of the analysis is (i) the evaluation of the method and how it works throughout the different seasons and (ii) the quantification of the contribution of trees and grasses to ecosystem fluxes of water, carbon, and energy under different environmental conditions and nutrient stoichiometry. The contribution of the trees to total ecosystem fluxes is variable in time. Especially, during the beginning of the senescence period high evapotranspiration rates and largest carbon uptake are measured while the contribution to sensible heat fluxes is largest during the end of the summer. During the regreening and winter the contribution of ET is relatively constant around 0.25 mm d-1. During the peak of the greenness ET and carbon flux of the herbaceous EC tower are sometimes higher than fluxes measured by the ecosystem tower which is most likely caused by the mismatch in footprints. Whenever the herbaceous layer is active it contributes clearly more to the fluxes as compared to the trees.

Interspecific variation in nighttime transpiration and stomatal conductance in a mixed New England deciduous forest.

PubMed

Daley, Michael J; Phillips, Nathan G

2006-04-01

Transpiration is generally assumed to be insignificant at night when stomata close in response to the lack of photosynthetically active radiation. However, there is increasing evidence that the stomata of some species remain open at night, which would allow for nighttime transpiration if there were a sufficient environmental driving force. We examined nighttime water use in co-occurring species in a mixed deciduous stand at Harvard Forest, MA, using whole-tree and leaf-level measurements. Diurnal whole-tree water use was monitored continuously with Granier-style sap flux sensors in paper birch (Betula papyrifera Marsh.), red oak (Quercus rubra L.) and red maple (Acer rubrum L.). An analysis was conducted in which nighttime water flux could be partitioned between refilling of internal water stores and transpiration. Substantial nighttime sap flux was observed in all species and much of this flux was attributed to the refilling of depleted water stores. However, in paper birch, nighttime sap flux frequently exceeded recharge estimates. Over 10% of the total daily sap flux during the growing season was due to transpiration at night in paper birch. Nighttime sap flux was over 8% of the total daily flux in red oak and 2% in red maple; however, this flux was mainly associated with recharge. On nights with elevated vapor pressure deficit, sap flux continued through the night in paper birch, whereas it reached zero during the night in red oak and red maple. Measurements of leaf-level gas exchange on a night with elevated vapor pressure deficit showed stomatal conductance dropping by only 25% in paper birch, while approaching zero in red oak and red maple. The study highlighted differences in ecophysiological controls on sap flux exerted by co-occurring species. Paper birch is a fast-growing, shade-intolerant species with an earlier successional status than red oak and red maple. Risking water loss through nighttime transpiration may provide paper birch with an ecological advantage by enabling the species to maximize photosynthesis and support rapid growth. Nighttime transpiration may also be a mechanism for delivering oxygen to respiring cells in the deep sapwood of paper birch.

[Characteristics of mercury exchange flux between soil and atmosphere under the snow retention and snow melting control].

PubMed

Zhang, Gang; Wang, Ning; Ai, Jian-Chao; Zhang, Lei; Yang, Jing; Liu, Zi-Qi

2013-02-01

Jiapigou gold mine, located in the upper Songhua River, was once the largest mine in China due to gold output, where gold extraction with algamation was widely applied to extract gold resulting in severe mercury pollution to ambient environmental medium. In order to study the characteristics of mercury exchange flux between soil (snow) and atmosphere under the snow retention and snow melting control, sampling sites were selected in equal distances along the slope which is situated in the typical hill-valley terrain unit. Mercury exchange flux between soil (snow) and atmosphere was determined with the method of dynamic flux chamber and in all sampling sites the atmosphere concentration from 0 to 150 cm near to the earth in the vertical direction was measured. Furthermore, the impact factors including synchronous meteorology, the surface characteristics under the snow retention and snow melting control and the mercury concentration in vertical direction were also investigated. The results are as follows: During the period of snow retention and melting the air mercury tends to gather towards valley bottom along the slope and an obvious deposit tendency process was found from air to the earth's surface under the control of thermal inversion due to the underlying surface of cold source (snow surface). However, during the period of snow melting, mercury exchange flux between the soil and atmosphere on the surface of the earth with the snow being melted demonstrates alternative deposit and release processes. As for the earth with snow covered, the deposit level of mercury exchange flux between soil and atmosphere is lower than that during the period of snow retention. The relationship between mercury exchange flux and impact factors shows that in snow retention there is a remarkable negative linear correlation between mercury exchange flux and air mercury concentration as well as between the former and the air temperature. In addition, in snow melting mercury exchange flux is remarkably negatively linearly correlated to air mercury concentration and positively linearly correlated to air temperature. Furthermore, there is a general positive linear correlation between mercury exchange flux and soil temperature on the surface of earth after snow melting.

Comparison of measured and modeled radiation, heat and water vapor fluxes: FIFE pilot study

NASA Technical Reports Server (NTRS)

Blad, Blaine L.; Hubbard, Kenneth G.; Verma, Shashi B.; Starks, Patrick; Norman, John M.; Walter-Shea, Elizabeth

1987-01-01

The feasibility of using radio frequency receivers to collect data from automated weather stations to model fluxes of latent heat, sensible heat, and radiation using routine weather data collected by automated weather stations was tested and the estimated fluxes were compared with fluxes measured over wheat. The model Cupid was used to model the fluxes. Two or more automated weather stations, interrogated by radio frequency and other means, were utilized to examine some of the climatic variability of the First ISLSCP (International Satellite Land-Surface Climatology Project) Field Experiment (FIFE) site, to measure and model reflected and emitted radiation streams from various locations at the site and to compare modeled latent and sensible heat fluxes with measured values. Some bidirectional reflected and emitted radiation data were collected from 23 locations throughout the FIFE site. Analysis of these data along with analysis of the measured sensible and latent heat fluxes is just beginning.

Metabolic control analysis using transient metabolite concentrations. Determination of metabolite concentration control coefficients.

PubMed Central

Delgado, J; Liao, J C

1992-01-01

The methodology previously developed for determining the Flux Control Coefficients [Delgado & Liao (1992) Biochem. J. 282, 919-927] is extended to the calculation of metabolite Concentration Control Coefficients. It is shown that the transient metabolite concentrations are related by a few algebraic equations, attributed to mass balance, stoichiometric constraints, quasi-equilibrium or quasi-steady states, and kinetic regulations. The coefficients in these relations can be estimated using linear regression, and can be used to calculate the Control Coefficients. The theoretical basis and two examples are discussed. Although the methodology is derived based on the linear approximation of enzyme kinetics, it yields reasonably good estimates of the Control Coefficients for systems with non-linear kinetics. PMID:1497632

Plume Impingement Analysis for the European Service Module Propulsion System

NASA Technical Reports Server (NTRS)

Yim, John Tamin; Sibe, Fabien; Ierardo, Nicola

2014-01-01

Plume impingement analyses were performed for the European Service Module (ESM) propulsion system Orbital Maneuvering System engine (OMS-E), auxiliary engines, and reaction control system (RCS) engines. The heat flux from plume impingement on the solar arrays and other surfaces are evaluated. This information is used to provide inputs for the ESM thermal analyses and help determine the optimal configuration for the RCS engines.

Thermodynamic considerations on Ca2+-induced biochemical reactions in living cells

NASA Astrophysics Data System (ADS)

Lucia, Umberto; Ponzetto, Antonio

2016-02-01

Cells can be regarded as complex engines that execute a series of chemical reactions. Energy transformations, thermo-electro-chemical processes and transport phenomena can occur across cell membranes. Different, related thermo-electro-biochemical behaviour can occur between health and disease states. Analysis of the irreversibility related to ion fluxes can represent a new approach to study and control the biochemical behaviour of living cells.

Conditional CO2 flux analysis of a managed grassland with the aid of stable isotopes

NASA Astrophysics Data System (ADS)

Zeeman, M. J.; Tuzson, B.; Emmenegger, L.; Knohl, A.; Buchmann, N.; Eugster, W.

2009-04-01

Short statured managed ecosystems, such as agricultural grasslands, exhibit high temporal changes in carbon dioxide assimilation and respiration fluxes for which measurements of the net CO2 flux, e.g. by using the eddy covariance (EC) method, give only limited insight. We have therefore adopted a recently proposed concept for conditional EC flux analysis of forest to grasslands, in order to identify and quantify daytime sub-canopy respiration fluxes. To validate the concept, high frequency (≈5 Hz) stable carbon isotope analyis of CO2 was used. We made eddy covariance measurements of CO2 and its isotopologues during four days in August 2007, using a novel quantum cascade laser absorption spectrometer, capable of high time resolution stable isotope analysis. The effects of a grass cut during the measurement period could be detected and resulted in a sub-canopy source conditional flux classification, for which the isotope composition of the CO2 could be confirmed to be of a respiration source. However, the conditional flux method did not work for an undisturbed grassland canopy. We attribute this to the flux measurement height that was chosen well above the roughness sublayer, where the natural isotopic tracer (δ13C) of respiration was too well mixed with background air.

Ares I Reaction Control System Propellant Feedline Decontamination Modeling

NASA Technical Reports Server (NTRS)

Pasch, James J.

2010-01-01

The objective of the work presented here is to quantify the effects of purge gas temperature, pressure, and mass flow rate on Hydrazine (Hz) decontamination rates of the Ares I Roll Control System and Reaction Control System. A survey of experts in this field revealed the absence of any decontamination rate prediction models. Three basic decontamination methods were identified for analysis and modeling. These include low pressure eduction, high flow rate purge, and pulse purge. For each method, an approach to predict the Hz mass transfer rate, as a function of system pressure, temperature, and purge gas mass flow rate, is developed based on the applicable physics. The models show that low pressure eduction is two orders of magnitude more effective than the high velocity purge, which in turn is two orders of magnitude more effective than the pure diffusion component of pulse purging of deadheads. Eduction subjects the system to low pressure conditions that promote the extraction of Hz vapors. At 120 F, Hz is saturated at approximately 1 psia. At lower pressures and 120 F, Hz will boil, which is an extremely efficient means to remove liquid Hz. The Hz boiling rate is predicted by equating the rate at which energy is added to the saturated liquid Hz through heaters at the tube outer wall with the energy removed from the liquid through evaporation. Boil-off fluxes were predicted by iterating through the range of local pressures with limits set by the minimum allowed pressure of 0.2 psia and maximum allowed wall temperature of 120 F established by the heaters, which gives a saturation pressure of approximately 1.0 psia. Figure 1 shows the resulting boil-off fluxes as a function of local eduction pressure. As depicted in figure 1, the flux is a strong inverse function of eduction pressure, and that minimizing the eduction pressure maximizes the boil-off flux. Also, higher outer wall temperatures lead to higher boil-off fluxes and allow for boil-off over a greater range of eduction pressures.

Partitioning of the net CO2 exchange using an automated chamber system reveals plant phenology as key control of production and respiration fluxes in a boreal peatland.

PubMed

Järveoja, Järvi; Nilsson, Mats B; Gažovič, Michal; Crill, Patrick M; Peichl, Matthias

2018-04-30

The net ecosystem CO 2 exchange (NEE) drives the carbon (C) sink-source strength of northern peatlands. Since NEE represents a balance between various production and respiration fluxes, accurate predictions of its response to global changes require an in depth understanding of these underlying processes. Currently, however, detailed information of the temporal dynamics as well as the separate biotic and abiotic controls of the NEE component fluxes is lacking in peatland ecosystems. In this study, we address this knowledge gap by using an automated chamber system established across natural and trenching-/vegetation removal plots to partition NEE into its production (i.e. gross and net primary production; GPP and NPP) and respiration (i.e. ecosystem, heterotrophic and autotrophic respiration; ER, Rh and Ra) fluxes in a boreal peatland in northern Sweden. Our results showed that daily NEE patterns were driven by GPP while variations in ER were governed by Ra rather than Rh. Moreover, we observed pronounced seasonal shifts in the Ra/Rh and above-/belowground NPP ratios throughout the main phenological phases. Generalized linear model analysis revealed that the greenness index derived from digital images (as a proxy for plant phenology) was the strongest control of NEE, GPP and NPP while explaining considerable fractions also in the variations of ER and Ra. In addition, our data exposed greater temperature sensitivity of NPP compared to Rh resulting in enhanced C sequestration with increasing temperature. Overall, our study suggests that the temporal patterns in NEE and its component fluxes are tightly coupled to vegetation dynamics in boreal peatlands and thus challenges previous studies that commonly identify abiotic factors as key drivers. These findings further emphasize the need for integrating detailed information on plant phenology into process-based models to improve predictions of global change impacts on the peatland C cycle. This article is protected by copyright. All rights reserved. This article is protected by copyright. All rights reserved.

MetaFluxNet: the management of metabolic reaction information and quantitative metabolic flux analysis.

PubMed

Lee, Dong-Yup; Yun, Hongsoek; Park, Sunwon; Lee, Sang Yup

2003-11-01

MetaFluxNet is a program package for managing information on the metabolic reaction network and for quantitatively analyzing metabolic fluxes in an interactive and customized way. It allows users to interpret and examine metabolic behavior in response to genetic and/or environmental modifications. As a result, quantitative in silico simulations of metabolic pathways can be carried out to understand the metabolic status and to design the metabolic engineering strategies. The main features of the program include a well-developed model construction environment, user-friendly interface for metabolic flux analysis (MFA), comparative MFA of strains having different genotypes under various environmental conditions, and automated pathway layout creation. http://mbel.kaist.ac.kr/ A manual for MetaFluxNet is available as PDF file.

Evidence of chaotic pattern in solar flux through a reproducible sequence of period-doubling-type bifurcations

NASA Technical Reports Server (NTRS)

Ashrafi, S.; Roszman, L.

1991-01-01

A preliminary study of the limits to solar flux intensity prediction, and of whether the general lack of predictability in the solar flux arises from the nonlinear chaotic nature of the Sun's physical activity is presented. Statistical analysis of a chaotic signal can extract only its most gross features, and detailed physical models fail, since even the simplest equations of motion for a nonlinear system can exhibit chaotic behavior. A recent theory by Feigenbaum suggests that nonlinear systems that can be led into chaotic behavior through a sequence of period-doubling bifurcations will exhibit a universal behavior. As the control parameter is increased, the bifurcation points occur in such a way that a proper ratio of these will approach the universal Feigenbaum number. Experimental evidence supporting the applicability of the Feigenbaum scenario to solar flux data is sparse. However, given the hypothesis that the Sun's convection zones are similar to a Rayleigh-Bernard mechanism, we can learn a great deal from the remarkable agreement observed between the prediction by theory (period doubling - a universal route to chaos) and the amplitude decrease of the signal's regular subharmonics. It is shown that period-doubling-type bifurcation is a possible route to a chaotic pattern of solar flux that is distinguishable from the logarithm of its power spectral density. This conclusion is the first positive step toward a reformulation of solar flux by a nonlinear chaotic approach. The ultimate goal of this research is to be able to predict an estimate of the upper and lower bounds for solar flux within its predictable zones. Naturally, it is an important task to identify the time horizons beyond which predictability becomes incompatible with computability.

Evidence of chaotic pattern in solar flux through a reproducible sequence of period-doubling-type bifurcations

NASA Technical Reports Server (NTRS)

Ashrafi, S.; Roszman, L.

1991-01-01

Presented here is a preliminary study of the limits to solar flux intensity prediction, and of whether the general lack of predictability in the solar flux arises from the nonlinear chaotic nature of the Sun's physical activity. Statistical analysis of a chaotic signal can extract only its most gross features, and detailed physical models fail, since even the simplest equations of motion for a nonlinear system can exhibit chaotic behavior. A recent theory by Feigenbaum suggests that nonlinear systems that can be led into chaotic behavior through a sequence of period-doubling bifurcations will exhibit a universal behavior. As the control parameter is increased, the bifurcation points occur in such a way that a proper ratio of these will approach the universal Feigenbaum number. Experimental evidence supporting the applicability of the Feigenbaum scenario to solar flux data is sparse. However, given the hypothesis that the Sun's convection zones are similar to a Rayleigh-Bernard mechanism, we can learn a great deal from the remarkable agreement observed between the prediction by theory (period doubling - a universal route to chaos) and the amplitude decrease of the signal's regular subharmonics. The authors show that period-doubling-type bifurcation is a possible route to a chaotic pattern of solar flux that is distinguishable from the logarithm of its power spectral density. This conclusion is the first positive step toward a reformulation of solar flux by a nonlinear chaotic approach. The ultimate goal of this research is to be able to predict an estimate of the upper and lower bounds for solar flux within its predictable zones. Naturally, it is an important task to identify the time horizons beyond which predictability becomes incompatible with computability.

Thermionic switched self-actuating reactor shutdown system

DOEpatents

Barrus, Donald M.; Shires, Charles D.; Brummond, William A.

1989-01-01

A self-actuating reactor shutdown system incorporating a thermionic switched electromagnetic latch arrangement which is responsive to reactor neutron flux changes and to reactor coolant temperature changes. The system is self-actuating in that the sensing thermionic device acts directly to release (scram) the control rod (absorber) without reference or signal from the main reactor plant protective and control systems. To be responsive to both temperature and neutron flux effects, two detectors are used, one responsive to reactor coolant temperatures, and the other responsive to reactor neutron flux increase. The detectors are incorporated into a thermionic diode connected electrically with an electromagnetic mechanism which under normal reactor operating conditions holds the the control rod in its ready position (exterior of the reactor core). Upon reaching either a specified temperature or neutron flux, the thermionic diode functions to short-circuit the electromagnetic mechanism causing same to lose its holding power and release the control rod, which drops into the reactor core region under gravitational force.

Spontaneous Ion Depletion and Accumulation Phenomena Induced by Imbibition through Permselective Medium

NASA Astrophysics Data System (ADS)

Lee, Hyomin; Jung, Yeonsu; Park, Sungmin; Kim, Ho-Young; Kim, Sung Jae

2016-11-01

Generally, an ion depletion region near a permselective medium is induced by predominant ion flux through the medium. External electric field or hydraulic pressure has been reported as the driving forces. Among these driving forces, an imbibition through the nanoporous medium was chosen as the mechanism to spontaneously generate the ion depletion region. The water-absorbing process leads to the predominant ion flux so that the spontaneous formation of the ion depletion zone is expected even if there are no additional driving forces except for the inherent capillary action. In this presentation, we derived the analytical solutions using perturbation method and asymptotic analysis for the spontaneous phenomenon. Using the analysis, we found that there is also spontaneous accumulation regime depending on the mobility of dissolved electrolytic species. Therefore, the rigorous analysis of the spontaneous ion depletion and accumulation phenomena would provide a key perspective for the control of ion transportation in nanofluidic system such as desalinator, preconcentrator, and energy harvesting device, etc. Samsung Research Funding Center of Samsung Electronics (SRFC-MA1301-02) and BK21 plus program of Creative Research Engineer Development IT, Seoul National University.

Event-driven sediment flux in Hueneme and Mugu submarine canyons, southern California

USGS Publications Warehouse

Xu, J. P.; Swarzenski, P.W.; Noble, M.; Li, A.-C.

2010-01-01

Vertical sediment fluxes and their dominant controlling processes in Hueneme and Mugu submarine canyons off south-central California were assessed using data from sediment traps and current meters on two moorings that were deployed for 6 months during the winter of 2007. The maxima of total particulate flux, which reached as high as 300+ g/m2/day in Hueneme Canyon, were recorded during winter storm events when high waves and river floods often coincided. During these winter storms, wave-induced resuspension of shelf sediment was a major source for the elevated sediment fluxes. Canyon rim morphology, rather than physical proximity to an adjacent river mouth, appeared to control the magnitude of sediment fluxes in these two submarine canyon systems. Episodic turbidity currents and internal bores enhanced sediment fluxes, particularly in the lower sediment traps positioned 30 m above the canyon floor. Lower excess 210Pb activities measured in the sediment samples collected during periods of peak total particulate flux further substantiate that reworked shelf-, rather than newly introduced river-borne, sediments supply most of the material entering these canyons during storms.

Mass analysis addition to the Differential Ion Flux Probe (DIFP) study

NASA Technical Reports Server (NTRS)

Wright, K. H., Jr.; Jolley, Richard

1994-01-01

The objective of this study is to develop a technique to measure the characteristics of space plasmas under highly disturbed conditions; e.g., non-Maxwellian plasmas with strong drifting populations and plasmas contaminated by spacecraft outgassing. The approach, conducted in conjunction with current MSFC activities, is to extend the capabilities of the Differential Ion Flux Probe (DIFP) to include a high throughput mass measurement that does not require either high voltage or contamination sensitive devices such as channeltron electron multipliers or microchannel plates. This will significantly reduce the complexity and expense of instrument fabrication, testing, and integration of flight hardware compared to classical mass analyzers. The feasibility of the enhanced DIFP has been verified by using breadboard test models in a controlled plasma environment. The ability to manipulate particles through the instrument regardless of incident angle, energy, or ionic component has been amply demonstrated. The energy analysis mode is differential and leads directly to a time-of-flight mass measurement. With the new design, the DIFP will separate multiple ion streams and analyze each stream independently for ion flux intensity, velocity (including direction of motion), mass, and temperature (or energy distribution). In particular, such an instrument will be invaluable on follow-on electrodynamic TSS missions and, possibly, for environmental monitoring on the space station.

Changes in total phosphorus concentration in the Red River of the North Basin, 1970-2012

USGS Publications Warehouse

Ryberg, Karen R.; Akyüz, F. Adnan; Lin, Wei

2015-01-01

The Red River of the North drains much of eastern North Dakota and northwestern Minnesota and flows north into Manitoba, Canada, ultimately into Lake Winnipeg; therefore, water quality is an International concern. With increased runoff in the past few decades, phosphorus flux (the amount of phosphorus transported by the river) has increased. This is a concern, especially with respect to Lake Winnipeg, an important inland fishery and recreational destination. There is pressure at the State and International levels to reduce phosphorus flux, an expensive proposition. Depending on the method (controlling sources, settling ponds, buffer strips), control of phosphorus flux is not always effective during spring runoff. This work represents a first step in developing a causal model for phosphorus flux by examining available data and changes in concentration over time. Total phosphorus concentration data for the Red River at Emerson, Manitoba, and at Fargo, North Dakota-Moorhead, Minnesota, were summarized and then analyzed using WRTDS (Weighted Regressions on Time, Discharge, and Season) to describe total phosphorus changes over time in two analysis periods: 1970-1993 and 1993-2012. Total phosphorus concentration increased in the first period at Emerson, Manitoba, indicating phosphorus was likely being transported to streams during runoff events. A very different pattern occurred at Fargo-Moorhead with declines in concentration, except at high discharge. While concentration continually changes, during the second period it decreased during spring runoff at Emerson and Fargo-Moorhead and during the growing season at Fargo-Moorhead, perhaps because of improved agricultural practices and declines in some uses of phosphorus.

Cost benefit analysis of remediation alternatives for controlling the flux of strontium-90 into the Columbia River

DOE Office of Scientific and Technical Information (OSTI.GOV)

Gustafson, F.W.; Todd, M.E.

1993-09-01

The release of large volumes of water to waste disposal cribs at the Hanford Site`s 100-N Area caused contaminants, principally strontium-90, to be carried toward the Columbia River through the groundwater. Since shutdown of the N Reactor, these releases have been discontinued, although small water flows continue to be discharged to the 1325-N crib. Most of the contamination which is now transported to the river is occurring as a result of the natural groundwater movement. The contaminated groundwater at N Springs flows into the river through seeps and springs along the river`s edge. An expedited response action (ERA) has beenmore » proposed to eliminate or restrict the flux of strontium-90 into the river. A cost benefit analysis of potential remedial alternatives was completed that recommends the alternative which best meets given selection criteria prescribed by the Comprehensive Environmental Response, Compensation, and Liability Act (CERCLA). The methodology used for evaluation, cost analysis, and alternative recommendation is the engineering evaluation/cost analysis (EE/CA). Complete remediation of the contaminated groundwater beneath 100-N Area was not a principal objective of the analysis. The objective of the cost benefit analysis was to identify a remedial alternative that optimizes the degree of benefit produced for the costs incurred.« less

Active and passive controls of Jeffrey nanofluid flow over a nonlinear stretching surface

NASA Astrophysics Data System (ADS)

Hayat, Tasawar; Aziz, Arsalan; Muhammad, Taseer; Alsaedi, Ahmed

This communication explores magnetohydrodynamic (MHD) boundary-layer flow of Jeffrey nanofluid over a nonlinear stretching surface with active and passive controls of nanoparticles. A nonlinear stretching surface generates the flow. Effects of thermophoresis and Brownian diffusion are considered. Jeffrey fluid is electrically conducted subject to non-uniform magnetic field. Low magnetic Reynolds number and boundary-layer approximations have been considered in mathematical modelling. The phenomena of impulsing the particles away from the surface in combination with non-zero mass flux condition is known as the condition of zero mass flux. Convergent series solutions for the nonlinear governing system are established through optimal homotopy analysis method (OHAM). Graphs have been sketched in order to analyze that how the temperature and concentration distributions are affected by distinct physical flow parameters. Skin friction coefficient and local Nusselt and Sherwood numbers are also computed and analyzed. Our findings show that the temperature and concentration distributions are increasing functions of Hartman number and thermophoresis parameter.

Spacecraft thermal balance testing using infrared sources

NASA Technical Reports Server (NTRS)

Tan, G. B. T.; Walker, J. B.

1982-01-01

A thermal balance test (controlled flux intensity) on a simple black dummy spacecraft using IR lamps was performed and evaluated, the latter being aimed specifically at thermal mathematical model (TMM) verification. For reference purposes the model was also subjected to a solar simulation test (SST). The results show that the temperature distributions measured during IR testing for two different model attitudes under steady state conditions are reproducible with a TMM. The TMM test data correlation is not as accurate for IRT as for SST. Using the standard deviation of the temperature difference distribution (analysis minus test) the SST data correlation is better by a factor of 1.8 to 2.5. The lower figure applies to the measured and the higher to the computer-generated IR flux intensity distribution. Techniques of lamp power control are presented. A continuing work program is described which is aimed at quantifying the differences between solar simulation and infrared techniques for a model representing the thermal radiating surfaces of a large communications spacecraft.

TNA4OptFlux – a software tool for the analysis of strain optimization strategies

PubMed Central

2013-01-01

Background Rational approaches for Metabolic Engineering (ME) deal with the identification of modifications that improve the microbes’ production capabilities of target compounds. One of the major challenges created by strain optimization algorithms used in these ME problems is the interpretation of the changes that lead to a given overproduction. Often, a single gene knockout induces changes in the fluxes of several reactions, as compared with the wild-type, and it is therefore difficult to evaluate the physiological differences of the in silico mutant. This is aggravated by the fact that genome-scale models per se are difficult to visualize, given the high number of reactions and metabolites involved. Findings We introduce a software tool, the Topological Network Analysis for OptFlux (TNA4OptFlux), a plug-in which adds to the open-source ME platform OptFlux the capability of creating and performing topological analysis over metabolic networks. One of the tool’s major advantages is the possibility of using these tools in the analysis and comparison of simulated phenotypes, namely those coming from the results of strain optimization algorithms. We illustrate the capabilities of the tool by using it to aid the interpretation of two E. coli strains designed in OptFlux for the overproduction of succinate and glycine. Conclusions Besides adding new functionalities to the OptFlux software tool regarding topological analysis, TNA4OptFlux methods greatly facilitate the interpretation of non-intuitive ME strategies by automating the comparison between perturbed and non-perturbed metabolic networks. The plug-in is available on the web site http://www.optflux.org, together with extensive documentation. PMID:23641878

Controllable morphology of flux avalanches in microstructured superconductors

NASA Astrophysics Data System (ADS)

Motta, M.; Colauto, F.; Vestgârden, J. I.; Fritzsche, J.; Timmermans, M.; Cuppens, J.; Attanasio, C.; Cirillo, C.; Moshchalkov, V. V.; Van de Vondel, J.; Johansen, T. H.; Ortiz, W. A.; Silhanek, A. V.

2014-04-01

The morphology of abrupt bursts of magnetic flux into superconducting films with engineered periodic pinning centers (antidots) has been investigated. Guided flux avalanches of thermomagnetic origin develop a treelike structure, with the main trunk perpendicular to the borders of the sample, while secondary branches follow well-defined directions determined by the geometrical details of the underlying periodic pinning landscape. Strikingly, we demonstrate that in a superconductor with relatively weak random pinning the morphology of such flux avalanches can be fully controlled by proper combinations of lattice symmetry and antidot geometry. Moreover, the resulting flux patterns can be reproduced, to the finest details, by simulations based on a phenomenological thermomagnetic model. In turn, this model can be used to predict such complex structures and to estimate physical variables of more difficult experimental access, such as the local values of temperature and electric field.

NUCLEAR REACTOR CONTROL SYSTEM

DOEpatents

Howard, D.F.; Motta, E.E.

1961-06-27

A method for controlling the excess reactivity in a nuclear reactor throughout the core life while maintaining the neutron flux distribution at the desired level is described. The control unit embodies a container having two electrodes of different surface area immersed in an electrolytic solution of a good neutron sbsorbing metal ion such as boron, gadolinium, or cadmium. Initially, the neutron absorber is plated on the larger electrode to control the greater neutron flux of a freshly refueled core. As the fuel burns up, the excess reactivity decreases and the neutron absorber is then plated onto the smaller electrode so that the number of neutrons absorbed also decreases. The excess reactivity in the core may thus be maintained without the introduction of serious perturbations in the neutron flux distributibn.

Photoneutron Flux Measurement via Neutron Activation Analysis in a Radiotherapy Bunker with an 18 MV Linear Accelerator

NASA Astrophysics Data System (ADS)

Çeçen, Yiğit; Gülümser, Tuğçe; Yazgan, Çağrı; Dapo, Haris; Üstün, Mahmut; Boztosun, Ismail

2017-09-01

In cancer treatment, high energy X-rays are used which are produced by linear accelerators (LINACs). If the energy of these beams is over 8 MeV, photonuclear reactions occur between the bremsstrahlung photons and the metallic parts of the LINAC. As a result of these interactions, neutrons are also produced as secondary radiation products (γ,n) which are called photoneutrons. The study aims to map the photoneutron flux distribution within the LINAC bunker via neutron activation analysis (NAA) using indium-cadmium foils. Irradiations made at different gantry angles (0°, 90°, 180° and 270°) with a total of 91 positions in the Philips SLI-25 linear accelerator treatment room and location-based distribution of thermal neutron flux was obtained. Gamma spectrum analysis was carried out with high purity germanium (HPGe) detector. Results of the analysis showed that the maximum neutron flux in the room occurred at just above of the LINAC head (1.2x105 neutrons/cm2.s) which is compatible with an americium-beryllium (Am-Be) neutron source. There was a 90% decrease of flux at the walls and at the start of the maze with respect to the maximum neutron flux. And, just in front of the LINAC door, inside the room, neutron flux was measured less than 1% of the maximum.

Observing BVOC Emissions, Oxidation, Deposition, and Interactions with Anthropogenic Pollutants to Form SOA in the Southeast United States

NASA Astrophysics Data System (ADS)

Goldstein, A. H.; Isaacman, G. A.; Misztal, P. K.; Yee, L.; Olson, K. F.; Moss, J.; Kreisberg, N. M.; Hering, S. V.; Park, J. H.; Kaser, L.; Seco, R.; Guenther, A. B.; Su, L.; Mak, J. E.; Holzinger, R.; Hu, W.; Campuzano Jost, P.; Palm, B. B.; Day, D. A.; Jimenez, J. L.; Koss, A.; De Gouw, J. A.

2014-12-01

Our overarching goals in the SOAS 2013 campaign were to 1) quantify biogenic VOC emission and VOC deposition to understand the processes controlling these bi-directional exchanges, 2) observe a broad suite of primary VOC and their oxidation products in the field and in controlled laboratory experiments, and 3) investigate their fate to understand how anthropogenic pollution alters oxidation pathways and secondary organic aerosol (SOA) formation. We pursued these goals through measurement of atmospheric organics ranging from very volatile (using in-situ GC-MS and proton transfer reaction time-of-flight MS, PTR-ToF-MS) to semi-volatile gas and particle phase compounds (using the Semi-Volatile Thermal desorption Aerosol Gas chromatograph, SV-TAG). Measured concentrations and fluxes of VOCs at the top of the SEARCH tower were coordinated with concentration gradients and fluxes at the AABC flux tower site, and vertical profiles using the Long-EZ aircraft to provide equivalent observations across sites. These results are informed through measurements using the same instrument during the FIXIT controlled laboratory oxidation study at CalTech that investigated oxidation pathways of BVOC with varying levels of anthropogenic pollutants. Measurements by SV-TAG of particle-phase and total gas-plus-particle-phase compounds at the SEARCH tower provide hourly quantification of semi-volatile compounds, including the oxidation products of measured VOCs. Derivatization of hydroxyl groups prior to GC analysis allows analysis of highly oxidized chemicals, including most known tracers. Methyl tetrols, an oxidation product of isoprene, had a significant day-time gas-phase component, and their abundance was strongly correlated with particle-phase sulfate, indicative of anthropogenic influence on the formation or partitioning processes. Similar observations of pinic acid (monterpene oxidation product) and many other BVOC oxidation products were made in both the gas and particle phases. Through measurements of specific chemical tracers across a wide range of volatilities, we explore the chemical lifecycle of BVOCs to understand anthropogenic-biogenic interactions in aerosol formation.

In situ measurement of mesopelagic particle sinking rates and the control of carbon transfer to the ocean interior during the Vertical Flux in the Global Ocean (VERTIGO) voyages in the North Pacific

NASA Astrophysics Data System (ADS)

Trull, T. W.; Bray, S. G.; Buesseler, K. O.; Lamborg, C. H.; Manganini, S.; Moy, C.; Valdes, J.

2008-07-01

Among the parameters affecting carbon transfer to the ocean interior, particle sinking rates vary three orders of magnitude and thus more than primary production, f-ratios, or particle carbon contents [e.g., Boyd, P.W., Trull, T.W., 2006. Understanding the export of marine biogenic particles: is there consensus? Progress in Oceanography 4, 276-312, doi:10.1016/j.pocean.2006.10.007]. Very few data have been obtained from the mesopelagic zone where the majority of carbon remineralization occurs and the attenuation of the sinking flux is determined. Here, we report sinking rates from ˜300 m depth for the subtropical (station ALOHA, June 2004) and subarctic (station K2, July 2005) North Pacific Ocean, obtained from short (6.5 day) deployments of an indented rotating sphere (IRS) sediment trap operating as an in situ settling column [Peterson, M.L., Wakeham, S.G., Lee, C., Askea, M.A., Miquel, J.C., 2005. Novel techniques for collection of sinking particles in the ocean and determining their settling rates. Limnology and Oceanography Methods 3, 520-532] to separate the flux into 11 sinking-rate fractions ranging from >820 to >2 m d -1 that are collected by a carousel for further analysis. Functioning of the IRS trap was tested using a novel programming sequence to check that all particles have cleared the settling column prior to the next delivery of particles by the 6-hourly rotation cycle of the IRS. There was some evidence (from the flux distribution among the cups and photomicroscopy of the collected particles) that very slow-sinking particles may have been under-collected because they were unable to penetrate the brine-filled collection cups, but good evidence for appropriate collection of fast-settling fractions. Approximately 50% of the particulate organic carbon (POC) flux was sinking at greater than 100 m d -1 at both stations. At ALOHA, more than 15% of the POC flux sank at >820 m d -1, but low fluxes make this uncertain, and precluded resolution of particles sinking slower than 137 m d -1. At K2, less than 1% of the POC flux sank at >820 m d -1, but a large fraction (˜15-45%) of the flux was contributed by other fast-sinking classes (410 and 205 m d -1). PIC and BSi minerals were not present in higher proportions in the faster sinking fractions, but the observations were too limited to rule out a ballasting contribution to the control of sinking rates. Photographic evidence for a wide range of particle types within individual sinking-rate fractions suggests that biological processes that set the porosity and shape of particles are also important and may mask the role of minerals. Comparing the spectrum of sinking rates observed at K2 with the power-law profile of flux attenuation with depth obtained from other VERTIGO sediment traps deployed at multiple depths [Buesseler, K.O., Lamborg, C.H., Boyd, P.W., Lam, P.J., Trull, T.W., Bidigare, R.R., Bishop, J.K.B., Casciotti, K.L., Dehairs, F., Elskens, M., Honda, M., Karl, D.M., Siegel, D., Silver, M., Steinberg, D., Valdes, J., Van Mooy, B., Wilson, S.E., 2007b. Revisiting carbon flux through the Ocean's twilight zone. Science 316(5824), 567-570, doi: 10.1126/science.1137959] emphasizes the importance of particle transformations within the mesopelagic zone in the control of carbon transport to the ocean interior.

Responses of Soil CO2 Fluxes to Short-Term Experimental Warming in Alpine Steppe Ecosystem, Northern Tibet

PubMed Central

Lu, Xuyang; Fan, Jihui; Yan, Yan; Wang, Xiaodan

2013-01-01

Soil carbon dioxide (CO2) emission is one of the largest fluxes in the global carbon cycle. Therefore small changes in the size of this flux can have a large effect on atmospheric CO2 concentrations and potentially constitute a powerful positive feedback to the climate system. Soil CO2 fluxes in the alpine steppe ecosystem of Northern Tibet and their responses to short-term experimental warming were investigated during the growing season in 2011. The results showed that the total soil CO2 emission fluxes during the entire growing season were 55.82 and 104.31 g C m-2 for the control and warming plots, respectively. Thus, the soil CO2 emission fluxes increased 86.86% with the air temperature increasing 3.74°C. Moreover, the temperature sensitivity coefficient (Q 10) of the control and warming plots were 2.10 and 1.41, respectively. The soil temperature and soil moisture could partially explain the temporal variations of soil CO2 fluxes. The relationship between the temporal variation of soil CO2 fluxes and the soil temperature can be described by exponential equation. These results suggest that warming significantly promoted soil CO2 emission in the alpine steppe ecosystem of Northern Tibet and indicate that this alpine ecosystem is very vulnerable to climate change. In addition, soil temperature and soil moisture are the key factors that controls soil organic matter decomposition and soil CO2 emission, but temperature sensitivity significantly decreases due to the rise in temperature. PMID:23536854

Responses of soil CO2 fluxes to short-term experimental warming in alpine steppe ecosystem, Northern Tibet.

PubMed

Lu, Xuyang; Fan, Jihui; Yan, Yan; Wang, Xiaodan

2013-01-01

Soil carbon dioxide (CO2) emission is one of the largest fluxes in the global carbon cycle. Therefore small changes in the size of this flux can have a large effect on atmospheric CO2 concentrations and potentially constitute a powerful positive feedback to the climate system. Soil CO2 fluxes in the alpine steppe ecosystem of Northern Tibet and their responses to short-term experimental warming were investigated during the growing season in 2011. The results showed that the total soil CO2 emission fluxes during the entire growing season were 55.82 and 104.31 g C m(-2) for the control and warming plots, respectively. Thus, the soil CO2 emission fluxes increased 86.86% with the air temperature increasing 3.74°C. Moreover, the temperature sensitivity coefficient (Q 10) of the control and warming plots were 2.10 and 1.41, respectively. The soil temperature and soil moisture could partially explain the temporal variations of soil CO2 fluxes. The relationship between the temporal variation of soil CO2 fluxes and the soil temperature can be described by exponential equation. These results suggest that warming significantly promoted soil CO2 emission in the alpine steppe ecosystem of Northern Tibet and indicate that this alpine ecosystem is very vulnerable to climate change. In addition, soil temperature and soil moisture are the key factors that controls soil organic matter decomposition and soil CO2 emission, but temperature sensitivity significantly decreases due to the rise in temperature.

The Ecophysiology Of A Pinus Ponderosa Ecosystem Exposed To High Tropospheric Ozone: Implications For Stomatal And Non-Stomatal Ozone Fluxes

NASA Astrophysics Data System (ADS)

Fares, S.; McKay, M.; Goldstein, A.

2008-12-01

Ecosystems remove ozone from the troposphere through both stomatal and non-stomatal deposition. The portion of ozone taken up through stomata has an oxidative effect causing damage. We used a multi-year dataset to assess the physiological controls over ozone deposition. Environmental parameters, CO2 and ozone fluxes were measured continuously from January 2001 to December 2006 above a ponderosa pine plantation near Blodgett Forest, Georgetown, California. We studied the dynamic of NEE (Net Ecosystem Exchange, -838 g C m-2 yr-1) and water evapotranspiration on an annual and daily basis. These processes are tightly coupled to stomatal aperture which also controlled ozone fluxes. High levels of ozone concentrations (~ 100 ppb) were observed during the spring-summer period, with corresponding high levels of ozone fluxes (~ 30 μmol m-2 h-1). During the summer season, a large portion of the total ozone flux was due to non-stomatal processes, and we propose that a plant physiological control, releasing BVOC (Biogenic Volatile Organic Compounds), is mainly responsible. We analyzed the correlations of common ozone exposure metrics based on accumulation of concentrations (AOT40 and SUM0) with ozone fluxes (total, stomatal and non-stomatal). Stomatal flux showed poorer correlation with ozone concentrations than non-stomatal flux during summer and fall seasons, which largely corresponded to the growing period. We therefore suggest that AOT40 and SUM0 are poor predictors of ozone damage and that a physiologically based metric would be more effective.

Standardized Automated CO2/H2O Flux Systems for Individual Research Groups and Flux Networks

NASA Astrophysics Data System (ADS)

Burba, George; Begashaw, Israel; Fratini, Gerardo; Griessbaum, Frank; Kathilankal, James; Xu, Liukang; Franz, Daniela; Joseph, Everette; Larmanou, Eric; Miller, Scott; Papale, Dario; Sabbatini, Simone; Sachs, Torsten; Sakai, Ricardo; McDermitt, Dayle

2017-04-01

In recent years, spatial and temporal flux data coverage improved significantly, and on multiple scales, from a single station to continental networks, due to standardization, automation, and management of data collection, and better handling of the extensive amounts of generated data. With more stations and networks, larger data flows from each station, and smaller operating budgets, modern tools are required to effectively and efficiently handle the entire process. Such tools are needed to maximize time dedicated to authoring publications and answering research questions, and to minimize time and expenses spent on data acquisition, processing, and quality control. Thus, these tools should produce standardized verifiable datasets and provide a way to cross-share the standardized data with external collaborators to leverage available funding, promote data analyses and publications. LI-COR gas analyzers are widely used in past and present flux networks such as AmeriFlux, ICOS, AsiaFlux, OzFlux, NEON, CarboEurope, and FluxNet-Canada, etc. These analyzers have gone through several major improvements over the past 30 years. However, in 2016, a three-prong development was completed to create an automated flux system which can accept multiple sonic anemometer and datalogger models, compute final and complete fluxes on-site, merge final fluxes with supporting weather soil and radiation data, monitor station outputs and send automated alerts to researchers, and allow secure sharing and cross-sharing of the station and data access. Two types of these research systems were developed: open-path (LI-7500RS) and enclosed-path (LI-7200RS). Key developments included: • Improvement of gas analyzer performance • Standardization and automation of final flux calculations onsite, and in real-time • Seamless integration with latest site management and data sharing tools In terms of the gas analyzer performance, the RS analyzers are based on established LI-7500/A and LI-7200 models, and the improvements focused on increased stability in the presence of contamination, refining temperature control and compensation, and providing more accurate fast gas concentration measurements. In terms of the flux calculations, improvements focused on automating the on-site flux calculations using EddyPro® software run by a weatherized fully digital microcomputer, SmartFlux2. In terms of site management and data sharing, the development focused on web-based software, FluxSuite, which allows real-time station monitoring and data access by multiple users. The presentation will describe details for the key developments and will include results from field tests of the RS gas analyzer models in comparison with older models and control reference instruments.

Fluidic self-actuating control assembly

DOEpatents

Grantz, Alan L.

1979-01-01

A fluidic self-actuating control assembly for use in a reactor wherein no external control inputs are required to actuate (scram) the system. The assembly is constructed to scram upon sensing either a sudden depressurization of reactor inlet flow or a sudden increase in core neutron flux. A fluidic control system senses abnormal flow or neutron flux transients and actuates the system, whereupon assembly coolant flow reverses, forcing absorber balls into the reactor core region.

Powder Flux Regulation in the Laser Material Deposition Process

NASA Astrophysics Data System (ADS)

Arrizubieta, Jon Iñaki; Wegener, Maximiliam; Arntz, Kristian; Lamikiz, Aitzol; Ruiz, Jose Exequiel

In the present research work a powder flux regulation system has been designed, developed and validated with the aim of improving the Laser Material Deposition (LMD) process. In this process, the amount of deposited material per substrate surface unit area depends on the real feed rate of the nozzle. Therefore, a regulation system based on a solenoid valve has been installed at the nozzle entrance in order to control the powder flux. The powder flux control has been performed based on the machine real feed rate, which is compared with the programmed feed rate. An instantaneous velocity error is calculated and the powder flow is controlled as a function of this variation using Pulse Width Modulation (PWM) signals. Thereby, in zones where the Laser Material Deposition machine reduces the feed rate due to a trajectory change, powder accumulation can be avoided and the generated clads would present a homogeneous shape.

Isotopically nonstationary 13C flux analysis of changes in Arabidopsis thaliana leaf metabolism due to high light acclimation

PubMed Central

Ma, Fangfang; Jazmin, Lara J.; Young, Jamey D.; Allen, Doug K.

2014-01-01

Improving plant productivity is an important aim for metabolic engineering. There are few comprehensive methods that quantitatively describe leaf metabolism, although such information would be valuable for increasing photosynthetic capacity, enhancing biomass production, and rerouting carbon flux toward desirable end products. Isotopically nonstationary metabolic flux analysis (INST-MFA) has been previously applied to map carbon fluxes in photoautotrophic bacteria, which involves model-based regression of transient 13C-labeling patterns of intracellular metabolites. However, experimental and computational difficulties have hindered its application to terrestrial plant systems. We performed in vivo isotopic labeling of Arabidopsis thaliana rosettes with 13CO2 and estimated fluxes throughout leaf photosynthetic metabolism by INST-MFA. Plants grown at 200 µmol m-2s−1 light were compared with plants acclimated for 9 d at an irradiance of 500 µmol⋅m−2⋅s−1. Approximately 1,400 independent mass isotopomer measurements obtained from analysis of 37 metabolite fragment ions were regressed to estimate 136 total fluxes (54 free fluxes) under each condition. The results provide a comprehensive description of changes in carbon partitioning and overall photosynthetic flux after long-term developmental acclimation of leaves to high light. Despite a doubling in the carboxylation rate, the photorespiratory flux increased from 17 to 28% of net CO2 assimilation with high-light acclimation (Vc/Vo: 3.5:1 vs. 2.3:1, respectively). This study highlights the potential of 13C INST-MFA to describe emergent flux phenotypes that respond to environmental conditions or plant physiology and cannot be obtained by other complementary approaches. PMID:25368168

Torque shudder protection device and method

DOEpatents

King, Robert D.; De Doncker, Rik W. A. A.; Szczesny, Paul M.

1997-01-01

A torque shudder protection device for an induction machine includes a flux command generator for supplying a steady state flux command and a torque shudder detector for supplying a status including a negative status to indicate a lack of torque shudder and a positive status to indicate a presence of torque shudder. A flux adapter uses the steady state flux command and the status to supply a present flux command identical to the steady state flux command for a negative status and different from the steady state flux command for a positive status. A limiter can receive the present flux command, prevent the present flux command from exceeding a predetermined maximum flux command magnitude, and supply the present flux command to a field oriented controller. After determining a critical electrical excitation frequency at which a torque shudder occurs for the induction machine, a flux adjuster can monitor the electrical excitation frequency of the induction machine and adjust a flux command to prevent the monitored electrical excitation frequency from reaching the critical electrical excitation frequency.

Torque shudder protection device and method

DOEpatents

King, R.D.; Doncker, R.W.A.A. De.; Szczesny, P.M.

1997-03-11

A torque shudder protection device for an induction machine includes a flux command generator for supplying a steady state flux command and a torque shudder detector for supplying a status including a negative status to indicate a lack of torque shudder and a positive status to indicate a presence of torque shudder. A flux adapter uses the steady state flux command and the status to supply a present flux command identical to the steady state flux command for a negative status and different from the steady state flux command for a positive status. A limiter can receive the present flux command, prevent the present flux command from exceeding a predetermined maximum flux command magnitude, and supply the present flux command to a field oriented controller. After determining a critical electrical excitation frequency at which a torque shudder occurs for the induction machine, a flux adjuster can monitor the electrical excitation frequency of the induction machine and adjust a flux command to prevent the monitored electrical excitation frequency from reaching the critical electrical excitation frequency. 5 figs.

Effects of physical and chemical aspects on membrane fouling and cleaning using interfacial free energy analysis in forward osmosis.

PubMed

Zhang, Wanzhu; Dong, Bingzhi

2018-05-20

Natural organic matter (NOM) in micro-polluted water purification using membranes is a critical issue to handle. Understanding the fouling mechanism in the forward osmosis (FO) process, particularly identifying the predominant factor that controls membrane fouling, could have significant effects on exerting the advantages of FO technique. Cellulose triacetate no-woven (CTA-NW) membrane is applied to experiments with a high removal efficiency (> 99%) for the model foulant. Tannic acid (TA) is used as a surrogate foulant for NOM in the membrane fouling process, thus enabling the analysis of the effects of physical and chemical aspects of water flux, retention, and adsorption. The membrane fouling behavior is affected mainly by the combined effects of the osmotic dragging force and the interaction of the pH in the working solution, foulants, and calcium ions, as demonstrated by the water flux loss and the changes of membrane retention and adsorption. The fouled CTA-NW membrane (in PRO mode) could be flux-recovered by > 85% through physical cleaning methods. The interfacial free energy analysis theory was used to analyze the membrane fouling behavior with calculating the interfacial cohesion and adhesion free energies. The cohesion free energy refers to the deposition of foulants (TA or TA combined with calcium ions) on a fouled membrane. In addition, the adhesion free energy could be used to evaluate the interaction between foulants and a clean membrane.

Analyzing the carbon cycle with the local ensemble transform Kalman filter, online transport model and real observation data

NASA Astrophysics Data System (ADS)

Maki, T.; Sekiyama, T. T.; Shibata, K.; Miyazaki, K.; Miyoshi, T.; Yamada, K.; Yokoo, Y.; Iwasaki, T.

2011-12-01

In the current carbon cycle analysis, inverse modeling plays an important role. However, it requires enormous computational resources when we deal with more flux regions and more observations. The local ensemble transform Kalman filter (LETKF) is an alternative approach to reduce such problems. We constructed a carbon cycle analysis system with the LETKF and MRI (Meteorological Research Institute) online transport model (MJ98-CDTM). In MJ98-CDTM, an off-line transport model (CDTM) is directly coupled with the MRI/JMA GCM (MJ98). We further improved vertical transport processes in MJ98-CDTM from previous study. The LETKF includes enhanced features such as smoother to assimilate future observations, adaptive inflation and bias correction scheme. In this study, we use CO2 observations of surface data (continuous and flask), aircraft data (CONTRAIL) and satellite data (GOSAT), although we plan to assimilate AIRS tropospheric CO2 data. We developed a quality control system. We estimated 3-day-mean CO2 flux at a resolution of T42. Here, only CO2 concentrations and fluxes are analyzed whereas meteorological fields are nudged by the Japanese reanalysis (JCDAS). The horizontal localization length scale and assimilation window are chosen to be 1000 km and 3 days, respectively. The results indicate that the assimilation system works properly, better than free transport model run when we validate with independent CO2 concentration observational data and CO2 analysis data.

13C based proteinogenic amino acid (PAA) and metabolic flux ratio analysis of Lactococcus lactis reveals changes in pentose phosphate (PP) pathway in response to agitation and temperature related stresses.

PubMed

Azizan, Kamalrul Azlan; Ressom, Habtom W; Mendoza, Eduardo R; Baharum, Syarul Nataqain

2017-01-01

Lactococcus lactis subsp. cremoris MG1363 is an important starter culture for dairy fermentation. During industrial fermentations, L. lactis is constantly exposed to stresses that affect the growth and performance of the bacterium. Although the response of L. lactis to several stresses has been described, the adaptation mechanisms at the level of in vivo fluxes have seldom been described. To gain insights into cellular metabolism, 13 C metabolic flux analysis and gas chromatography mass spectrometry (GC-MS) were used to measure the flux ratios of active pathways in the central metabolism of L. lactis when subjected to three conditions varying in temperature (30°C, 37°C) and agitation (with and without agitation at 150 rpm). Collectively, the concentrations of proteinogenic amino acids (PAAs) and free fatty acids (FAAs) were compared, and Pearson correlation analysis ( r ) was calculated to measure the pairwise relationship between PAAs. Branched chain and aromatic amino acids, threonine, serine, lysine and histidine were correlated strongly, suggesting changes in flux regulation in glycolysis, the pentose phosphate (PP) pathway, malic enzyme and anaplerotic reaction catalysed by pyruvate carboxylase (pycA). Flux ratio analysis revealed that glucose was mainly converted by glycolysis, highlighting the stability of L. lactis' central carbon metabolism despite different conditions. Higher flux ratios through oxaloacetate (OAA) from pyruvate (PYR) reaction in all conditions suggested the activation of pyruvate carboxylate (pycA) in L. lactis , in response to acid stress during exponential phase. Subsequently, more significant flux ratio differences were seen through the oxidative and non-oxidative pentose phosphate (PP) pathways, malic enzyme, and serine and C1 metabolism, suggesting NADPH requirements in response to environmental stimuli. These reactions could play an important role in optimization strategies for metabolic engineering in L. lactis . Overall, the integration of systematic analysis of amino acids and flux ratio analysis provides a systems-level understanding of how L. lactis regulates central metabolism under various conditions.

Summary and synthesis of recommendations of the AmeriFlux Workshop on standardization of flux analysis and diagnostics; Corvallis, Oregon; August 2002

Treesearch

W. J. Massman; J. Finnigan; D. Billesbach; S. Miller; A. Black; B. Amiro; B. Law; X. Lee; L. Mahrt; R. Dahlman; T. Foken

2003-01-01

A DOE sponsored workshop was held August 27 - 30, 2002 at Oregon State University, Corvallis, Oregon. It was the second of the international AmeriFlux workshops intended to outline and recommend scientifically preferred procedures for calculating and 'correcting' eddy covariance fluxes for all AmeriFlux sites. The fundamental goals of these workshops are (1)...

Metabolic engineering of Synechocystis sp. PCC 6803 for enhanced ethanol production based on flux balance analysis.

PubMed

Yoshikawa, Katsunori; Toya, Yoshihiro; Shimizu, Hiroshi

2017-05-01

Synechocystis sp. PCC 6803 is an attractive host for bio-ethanol production due to its ability to directly convert atmospheric carbon dioxide into ethanol using photosystems. To enhance ethanol production in Synechocystis sp. PCC 6803, metabolic engineering was performed based on in silico simulations, using the genome-scale metabolic model. Comprehensive reaction knockout simulations by flux balance analysis predicted that the knockout of NAD(P)H dehydrogenase enhanced ethanol production under photoautotrophic conditions, where ammonium is the nitrogen source. This deletion inhibits the re-oxidation of NAD(P)H, which is generated by ferredoxin-NADP + reductase and imposes re-oxidation in the ethanol synthesis pathway. The effect of deleting the ndhF1 gene, which encodes NADH dehydrogenase subunit 5, on ethanol production was experimentally evaluated using ethanol-producing strains of Synechocystis sp. PCC 6803. The ethanol titer of the ethanol-producing ∆ndhF1 strain increased by 145%, compared with that of the control strain.

Sum over Histories Representation for Kinetic Sensitivity Analysis: How Chemical Pathways Change When Reaction Rate Coefficients Are Varied

DOE Office of Scientific and Technical Information (OSTI.GOV)

Bai, Shirong; Davis, Michael J.; Skodje, Rex T.

2015-11-12

The sensitivity of kinetic observables is analyzed using a newly developed sum over histories representation of chemical kinetics. In the sum over histories representation, the concentrations of the chemical species are decomposed into the sum of probabilities for chemical pathways that follow molecules from reactants to products or intermediates. Unlike static flux methods for reaction path analysis, the sum over histories approach includes the explicit time dependence of the pathway probabilities. Using the sum over histories representation, the sensitivity of an observable with respect to a kinetic parameter such as a rate coefficient is then analyzed in terms of howmore » that parameter affects the chemical pathway probabilities. The method is illustrated for species concentration target functions in H-2 combustion where the rate coefficients are allowed to vary over their associated uncertainty ranges. It is found that large sensitivities are often associated with rate limiting steps along important chemical pathways or by reactions that control the branching of reactive flux« less

Calcium regulation of oxidative phosphorylation in rat skeletal muscle mitochondria.

PubMed

Kavanagh, N I; Ainscow, E K; Brand, M D

2000-02-24

Activation of oxidative phosphorylation by physiological levels of calcium in mitochondria from rat skeletal muscle was analysed using top-down elasticity and regulation analysis. Oxidative phosphorylation was conceptually divided into three subsystems (substrate oxidation, proton leak and phosphorylation) connected by the membrane potential or the protonmotive force. Calcium directly activated the phosphorylation subsystem and (with sub-saturating 2-oxoglutarate) the substrate oxidation subsystem but had no effect on the proton leak kinetics. The response of mitochondria respiring on 2-oxoglutarate at two physiological concentrations of free calcium was quantified using control and regulation analysis. The partial integrated response coefficients showed that direct stimulation of substrate oxidation contributed 86% of the effect of calcium on state 3 oxygen consumption, and direct activation of the phosphorylation reactions caused 37% of the increase in phosphorylation flux. Calcium directly activated phosphorylation more strongly than substrate oxidation (78% compared to 45%) to achieve homeostasis of mitochondrial membrane potential during large increases in flux.

Elucidating the role of copper in CHO cell energy metabolism using (13)C metabolic flux analysis.

PubMed

Nargund, Shilpa; Qiu, Jinshu; Goudar, Chetan T

2015-01-01

(13)C-metabolic flux analysis was used to understand copper deficiency-related restructuring of energy metabolism, which leads to excessive lactate production in recombinant protein-producing CHO cells. Stationary-phase labeling experiments with U-(13)C glucose were conducted on CHO cells grown under high and limiting copper in 3 L fed-batch bioreactors. The resultant labeling patterns of soluble metabolites were measured by GC-MS and used to estimate metabolic fluxes in the central carbon metabolism pathways using OpenFlux. Fluxes were evaluated 300 times from stoichiometrically feasible random guess values and their confidence intervals calculated by Monte Carlo simulations. Results from metabolic flux analysis exhibited significant carbon redistribution throughout the metabolic network in cells under Cu deficiency. Specifically, glycolytic fluxes increased (25%-79% relative to glucose uptake) whereas fluxes through the TCA and pentose phosphate pathway (PPP) were lower (15%-23% and 74%, respectively) compared with the Cu-containing condition. Furthermore, under Cu deficiency, 33% of the flux entering TCA via the pyruvate node was redirected to lactate and malate production. Based on these results, we hypothesize that Cu deficiency disrupts the electron transport chain causing ATP deficiency, redox imbalance, and oxidative stress, which in turn drive copper-deficient CHO cells to produce energy via aerobic glycolysis, which is associated with excessive lactate production, rather than the more efficient route of oxidative phosphorylation. © 2015 American Institute of Chemical Engineers.

Inter-comparison of Flux-Gradient and Relaxed Eddy Accumulation Methods for Measuring Ammonia Flux Above a Corn Canopy in Central Illinois, USA

NASA Astrophysics Data System (ADS)

Nelson, A. J.; Koloutsou-Vakakis, S.; Rood, M. J.; Lichiheb, N.; Heuer, M.; Myles, L.

2017-12-01

Ammonia (NH3) is a precursor to fine particulate matter (PM) in the ambient atmosphere. Agricultural activities represent over 80% of anthropogenic emissions of NH3 in the United States. The use of nitrogen-based fertilizers contribute > 50% of total NH3 emissions in central Illinois. The U.S. EPA Science Advisory Board has called for improved methods to measure, model, and report atmospheric NH3 concentrations and emissions from agriculture. High uncertainties in the temporal and spatial distribution of NH3 emissions contribute to poor performance of air quality models in predicting ambient PM concentrations. This study reports and compares NH­3 flux measurements of differing temporal resolution obtained with two methods: relaxed eddy accumulation (REA) and flux-gradient (FG). REA and FG systems were operated concurrently above a corn canopy at the University of Illinois at Urbana-Champaign (UIUC) Energy Biosciences Institute (EBI) Energy Farm during the 2014 corn-growing season. The REA system operated during daytime, providing average fluxes over four-hour sampling intervals, where time resolution was limited by detection limit of denuders. The FG system employed a cavity ring-down spectrometer, and was operated continuously, reporting 30 min flux averages. A flux-footprint evaluation was used for quality control, resulting in 1,178 qualified FG measurements, 82 of which were coincident with REA measurements. Similar emission trends were observed with both systems, with peak NH3 emission observed one week after fertilization. For all coincident samples, mean NH3 flux was 205 ± 300 ng-N-m2s-1 and 110 ± 256 ng-N-m2s-1 as measured with REA and FG, respectively, where positive flux indicates emission. This is the first reported inter-comparison of REA and FG methods as used for quantifying NH3 fluxes from cropland. Preliminary analysis indicates the improved temporal resolution and continuous sampling enabled by FG allow for the identification of emission pulses not observed using REA, however, the lower cost of equipment for REA makes it an attractive approach for sampling at multiple sites.

Landscape and environmental controls over leaf and ecosystem carbon dioxide fluxes under woody plant expansion

USDA-ARS?s Scientific Manuscript database

Many regions of the globe are experiencing a simultaneous change in the dominant plant functional type and regional climatology. We explored how atmospheric temperature and precipitation input control leaf- and ecosystem scale carbon fluxes within a pair of semiarid shrublands that had undergone woo...

Evaluation of carbon isotope flux partitioning theory under simplified and controlled environmental conditions

USDA-ARS?s Scientific Manuscript database

Separation of the photosynthetic (Fp) and respiratory (Fr) fluxes of net CO2 exchange (Fn)remains a necessary step toward understanding the biological and physical controls on carbon cycling between the soil, biomass, and atmosphere. Despite recent advancements in stable carbon isotope partitioning ...

Sr and U isotope ratios in soil waters as tracers of weathering dynamic in soils (Strengbach catchment - Vosges-mountains; France).

NASA Astrophysics Data System (ADS)

Chabaux, François; Prunier, Jonathan; Pierret, Marie-Claire; Stille, Peter

2013-04-01

It is proposed in this study to highlight the interest of multi-tracer geochemical approaches combining measurement of major and trace element concentrations along with U and Sr isotopic ratios to constrain the characterization of the present-day weathering processes controlling the chemical composition of waters and soils in natural ecosystems. This is important if we want to predict and to model correctly the response of ecosystems to recent environmental changes. The approach is applied to the small granitic Strengbah Catchment, located in the Vosges Mountain (France), used and equipped as a hydro-geochemical observatory since 1986 (Observatoire Hydro-Géochimique de l'Environnement; http://ohge.u-strasbg.fr). This study includes the analysis of major and trace element concentrations and (U-Sr) isotope ratios in soil solutions collected within two soil profiles located on two experimental plots of this watershed, along with the analysis of soil samples and vegetation samples from these two plots. The depth variation of elemental concentrations of soil solutions confirms the important influence of the vegetation cycling on the budget of Ca, K, Rb and Sr, whereas Mg and Si budget in soil solutions are quasi exclusively controlled by weathering processes. Variation of Sr, and U isotopic ratios with depth also demonstrates that the sources and biogeochemical processes controlling the Sr budget of soil solutions is different in the uppermost soil horizons and in the deeper ones, and clearly influence by the vegetation cycling. From the obtained data, it can be therefore proposed a scheme where in addition to the external flux associated to the decomposition of organic matter and throughfall, occurs a double lithogenic flux: a surface flux which can be associated to dissolution of secondary minerals contained in fine silt fractions and a deeper one, controlled by water-rock interactions which can mobilize elements from primary minerals like plagioclases or orthose. These results shows also that the Strengbach watershed is in a transient state of weathering with an important loss of nutriments such as Ca in soils solutions since 15years, associated with an increase of a lithogenic flux indicating a recent modification of weathering/dissolution reactions involved in the soil horizons. The origin of the weathering modification could be the consequence of the acid rains on weathering granitic bedrock or a consequence of forest exploitation incompatible with the nutriment reserve of soils with recent plantations of conifer, which impoverish soils.

Measuring Convective Mass Fluxes Over Tropical Oceans

NASA Astrophysics Data System (ADS)

Raymond, David

2017-04-01

Deep convection forms the upward branches of all large-scale circulations in the tropics. Understanding what controls the form and intensity of vertical convective mass fluxes is thus key to understanding tropical weather and climate. These mass fluxes and the corresponding conditions supporting them have been measured by recent field programs (TPARC/TCS08, PREDICT, HS3) in tropical disturbances considered to be possible tropical storm precursors. In reality, this encompasses most strong convection in the tropics. The measurements were made with arrays of dropsondes deployed from high altitude. In some cases Doppler radar provided additional measurements. The results are in some ways surprising. Three factors were found to control the mass flux profiles, the strength of total surface heat fluxes, the column-integrated relative humidity, and the low to mid-tropospheric moist convective instability. The first two act as expected, with larger heat fluxes and higher humidity producing more precipitation and stronger lower tropospheric mass fluxes. However, unexpectedly, smaller (but still positive) convective instability produces more precipitation as well as more bottom-heavy convective mass flux profiles. Furthermore, the column humidity and the convective instability are anti-correlated, at least in the presence of strong convection. On spatial scales of a few hundred kilometers, the virtual temperature structure appears to be in dynamic balance with the pattern of potential vorticity. Since potential vorticity typically evolves on longer time scales than convection, the potential vorticity pattern plus the surface heat fluxes then become the immediate controlling factors for average convective properties. All measurements so far have taken place in regions with relatively flat sea surface temperature (SST) distributions. We are currently seeking funding for a measurement program in the tropical east Pacific, a region that exhibits strong SST gradients and correspondingly great diversity in the forms of convection. Given the strong boundary layer flows induced by the SST gradients in this region, we hope to determine whether the patterns of convective mass flux seen in other regions persist there.

Two-Scale 13C Metabolic Flux Analysis for Metabolic Engineering.

PubMed

Ando, David; Garcia Martin, Hector

2018-01-01

Accelerating the Design-Build-Test-Learn (DBTL) cycle in synthetic biology is critical to achieving rapid and facile bioengineering of organisms for the production of, e.g., biofuels and other chemicals. The Learn phase involves using data obtained from the Test phase to inform the next Design phase. As part of the Learn phase, mathematical models of metabolic fluxes give a mechanistic level of comprehension to cellular metabolism, isolating the principle drivers of metabolic behavior from the peripheral ones, and directing future experimental designs and engineering methodologies. Furthermore, the measurement of intracellular metabolic fluxes is specifically noteworthy as providing a rapid and easy-to-understand picture of how carbon and energy flow throughout the cell. Here, we present a detailed guide to performing metabolic flux analysis in the Learn phase of the DBTL cycle, where we show how one can take the isotope labeling data from a 13 C labeling experiment and immediately turn it into a determination of cellular fluxes that points in the direction of genetic engineering strategies that will advance the metabolic engineering process.For our modeling purposes we use the Joint BioEnergy Institute (JBEI) Quantitative Metabolic Modeling (jQMM) library, which provides an open-source, python-based framework for modeling internal metabolic fluxes and making actionable predictions on how to modify cellular metabolism for specific bioengineering goals. It presents a complete toolbox for performing different types of flux analysis such as Flux Balance Analysis, 13 C Metabolic Flux Analysis, and it introduces the capability to use 13 C labeling experimental data to constrain comprehensive genome-scale models through a technique called two-scale 13 C Metabolic Flux Analysis (2S- 13 C MFA) [1]. In addition to several other capabilities, the jQMM is also able to predict the effects of knockouts using the MoMA and ROOM methodologies. The use of the jQMM library is illustrated through a step-by-step demonstration, which is also contained in a digital Jupyter Notebook format that enhances reproducibility and provides the capability to be adopted to the user's specific needs. As an open-source software project, users can modify and extend the code base and make improvements at will, providing a base for future modeling efforts.

Turbulent flux variability and energy balance closure in the TERENO prealpine observatory: a hydrometeorological data analysis

NASA Astrophysics Data System (ADS)

Soltani, Mohsen; Mauder, Matthias; Laux, Patrick; Kunstmann, Harald

2017-07-01

The temporal multiscale variability of the surface heat fluxes is assessed by the analysis of the turbulent heat and moisture fluxes using the eddy covariance (EC) technique at the TERrestrial ENvironmental Observatories (TERENO) prealpine region. The fast and slow response variables from three EC sites located at Fendt, Rottenbuch, and Graswang are gathered for the period of 2013 to 2014. Here, the main goals are to characterize the multiscale variations and drivers of the turbulent fluxes, as well as to quantify the energy balance closure (EBC) and analyze the possible reasons for the lack of EBC at the EC sites. To achieve these goals, we conducted a principal component analysis (PCA) and a climatological turbulent flux footprint analysis. The results show significant differences in the mean diurnal variations of the sensible heat (H) and latent heat (LE) fluxes, because of variations in the solar radiation, precipitation patterns, soil moisture, and the vegetation fraction throughout the year. LE was the main consumer of net radiation. Based on the first principal component (PC1), the radiation and temperature components with a total mean contribution of 29.5 and 41.3%, respectively, were found to be the main drivers of the turbulent fluxes at the study EC sites. A general lack of EBC is observed, where the energy imbalance values amount 35, 44, and 35% at the Fendt, Rottenbuch, and Graswang sites, respectively. An average energy balance ratio (EBR) of 0.65 is obtained in the region. The best closure occurred in the afternoon peaking shortly before sunset with a different pattern and intensity between the study sites. The size and shape of the annual mean half-hourly turbulent flux footprint climatology was analyzed. On average, 80% of the flux footprint was emitted from a radius of approximately 250 m around the EC stations. Moreover, the overall shape of the flux footprints was in good agreement with the prevailing wind direction for all three TERENO EC sites.

Advancement in Watershed Modelling Using Dynamic Lateral and Longitudinal Sediment (Dis)connectivity Prediction

NASA Astrophysics Data System (ADS)

Mahoney, D. T.; al Aamery, N. M. H.; Fox, J.

2017-12-01

The authors find that sediment (dis)connectivity has seldom taken precedence within watershed models, and the present study advances this modeling framework and applies the modeling within a bedrock-controlled system. Sediment (dis)connectivity, defined as the detachment and transport of sediment from source to sink between geomorphic zones, is a major control on sediment transport. Given the availability of high resolution geospatial data, coupling sediment connectivity concepts within sediment prediction models offers an approach to simulate sediment sources and pathways within a watershed's sediment cascade. Bedrock controlled catchments are potentially unique due to the presence of rock outcrops causing longitudinal impedance to sediment transport pathways in turn impacting the longitudinal distribution of the energy gradient responsible for conveying sediment. Therefore, the authors were motivated by the need to formulate a sediment transport model that couples sediment (dis)connectivity knowledge to predict sediment flux for bedrock controlled catchments. A watershed-scale sediment transport model was formulated that incorporates sediment (dis)connectivity knowledge collected via field reconnaissance and predicts sediment flux through coupling with the Partheniades equation and sediment continuity model. Sediment (dis)connectivity was formulated by coupling probabilistic upland lateral connectivity prediction with instream longitudinal connectivity assessments via discretization of fluid and sediment pathways. Flux predictions from the upland lateral connectivity model served as an input to the instream longitudinal connectivity model. Disconnectivity in the instream model was simulated via the discretization of stream reaches due to barriers such as bedrock outcroppings and man-made check dams. The model was tested for a bedrock controlled catchment in Kentucky, USA for which extensive historic water and sediment flux data was available. Predicted sediment flux was validated via sediment flux measurements collected by the authors. Watershed configuration and the distribution of lateral and longitudinal impedances to sediment transport were found to have significant influence on sediment connectivity and thus sediment flux.

Parameter sensitivity analysis of a 1-D cold region lake model for land-surface schemes

NASA Astrophysics Data System (ADS)

Guerrero, José-Luis; Pernica, Patricia; Wheater, Howard; Mackay, Murray; Spence, Chris

2017-12-01

Lakes might be sentinels of climate change, but the uncertainty in their main feedback to the atmosphere - heat-exchange fluxes - is often not considered within climate models. Additionally, these fluxes are seldom measured, hindering critical evaluation of model output. Analysis of the Canadian Small Lake Model (CSLM), a one-dimensional integral lake model, was performed to assess its ability to reproduce diurnal and seasonal variations in heat fluxes and the sensitivity of simulated fluxes to changes in model parameters, i.e., turbulent transport parameters and the light extinction coefficient (Kd). A C++ open-source software package, Problem Solving environment for Uncertainty Analysis and Design Exploration (PSUADE), was used to perform sensitivity analysis (SA) and identify the parameters that dominate model behavior. The generalized likelihood uncertainty estimation (GLUE) was applied to quantify the fluxes' uncertainty, comparing daily-averaged eddy-covariance observations to the output of CSLM. Seven qualitative and two quantitative SA methods were tested, and the posterior likelihoods of the modeled parameters, obtained from the GLUE analysis, were used to determine the dominant parameters and the uncertainty in the modeled fluxes. Despite the ubiquity of the equifinality issue - different parameter-value combinations yielding equivalent results - the answer to the question was unequivocal: Kd, a measure of how much light penetrates the lake, dominates sensible and latent heat fluxes, and the uncertainty in their estimates is strongly related to the accuracy with which Kd is determined. This is important since accurate and continuous measurements of Kd could reduce modeling uncertainty.

Soil Carbon Dioxide Production and Surface Fluxes: Subsurface Physical Controls

NASA Astrophysics Data System (ADS)

Risk, D.; Kellman, L.; Beltrami, H.

Soil respiration is a critical determinant of landscape carbon balance. Variations in soil temperature and moisture patterns are important physical processes controlling soil respiration which need to be better understood. Relationships between soil respi- ration and physical controls are typically addressed using only surface flux data but other methods also exist which permit more rigorous interpretation of soil respira- tion processes. Here we use a combination of subsurface CO_{2} concentrations, surface CO_{2} fluxes and detailed physical monitoring of the subsurface envi- ronment to examine physical controls on soil CO_{2} production at four climate observatories in Eastern Canada. Results indicate that subsurface CO_{2} produc- tion is more strongly correlated to the subsurface thermal environment than the surface CO_{2} flux. Soil moisture was also found to have an important influence on sub- surface CO_{2} production, particularly in relation to the soil moisture - soil profile diffusivity relationship. Non-diffusive profile CO_{2} transport appears to be im- portant at these sites, resulting in a de-coupling of summertime surface fluxes from subsurface processes and violating assumptions that surface CO_{2} emissions are the result solely of diffusion. These results have implications for the study of soil respiration across a broad range of terrestrial environments.

Postprandial portal fluxes of essential amino acids, volatile fatty acids, and urea-nitrogen in growing pigs fed a high-fiber diet supplemented with a multi-enzyme cocktail.

PubMed

Agyekum, A K; Kiarie, E; Walsh, M C; Nyachoti, C M

2016-09-01

The present study investigated the effects of adding a multi-enzyme cocktail (MC) to a high-fiber diet on net portal-drained viscera (PDV) fluxes of essential AA (EAA), volatile fatty acids (VFA), and blood urea-N (BUN) in growing pigs. Five female pigs (22.8 ± 1.6 kg BW), with catheters in the portal vein, ileal vein, and carotid artery, were fed 3 isocaloric-nitrogenous diets at 4% of their BW once daily at 0900 h for 7 d in a replicated 3 × 3 Latin square design. The diets contained corn and soybean meal with 0% (control) or 30% distillers' dried grains with solubles (DDGS; HF) produced from a 1:1 mixture of wheat and corn. The third diet was supplemented with MC in addition to the 30% DDGS (HF + MC). The MC supplied (analyzed values) 5,397 U of xylanase, 162 U of β-glucanase, and 2,000 U of protease and guaranteed minimum activities of 1,000 U of α-amylase and 25 U of pectinase per kg of diet. On d 7, para-amino hippuric acid was infused into the ileal vein (to measure flow rate), and blood was sampled from the portal vein and carotid artery for 7 h after feeding to assay EAA, urea-N, and VFA. Portal absorption of nutrients was derived by multiplying the porto-arterial plasma concentration differences by portal vein blood flow. Diet had no effect on postprandial portal vein plasma flow rate and net BUN flux, but portal BUN tended to be lower ( = 0.070) and arterial BUN was lower ( 0.05) over the 7 h in pigs fed control. Postprandial portal Arg, Ile, Leu, Trp, and Val or net fluxes were lower ( 0.05) in HF-fed pigs from 30 to 240 min than control-fed pigs and MC supplementation tended (0.05 ≤ ≤ 0.10) to or improved ( 0.05) portal appearances of those AA, but not their fluxes. Control-fed pigs had higher ( 0.05) net portal fluxes of most EAA and pigs fed HF + MC had higher ( 0.05) Lys, and similar Met and Phe net portal fluxes were compared with control-fed pigs. Portal VFA was not affected by diet. However, total portal VFA flux was lower ( 0.05) in the HF-fed pigs than in the control pigs. The MC supplementation improved the total portal VFA flux, although it did not improve arterial VFA concentration relative to the HF diet. In conclusion, supplementing the HF diet with MC improved net portal appearance of some EAA and fluxes of total VFA, whereas fluxes of EAA did not change. The HF diet increased EAA demand by the PDV, but MC addition was not able to reduce this demand.

Reducing Recon 2 for steady-state flux analysis of HEK cell culture.

PubMed

Quek, Lake-Ee; Dietmair, Stefanie; Hanscho, Michael; Martínez, Verónica S; Borth, Nicole; Nielsen, Lars K

2014-08-20

A representative stoichiometric model is essential to perform metabolic flux analysis (MFA) using experimentally measured consumption (or production) rates as constraints. For Human Embryonic Kidney (HEK) cell culture, there is the opportunity to use an extremely well-curated and annotated human genome-scale model Recon 2 for MFA. Performing MFA using Recon 2 without any modification would have implied that cells have access to all functionality encoded by the genome, which is not realistic. The majority of intracellular fluxes are poorly determined as only extracellular exchange rates are measured. This is compounded by the fact that there is no suitable metabolic objective function to suppress non-specific fluxes. We devised a heuristic to systematically reduce Recon 2 to emphasize flux through core metabolic reactions. This implies that cells would engage these dominant metabolic pathways to grow, and any significant changes in gross metabolic phenotypes would have invoked changes in these pathways. The reduced metabolic model becomes a functionalized version of Recon 2 used for identifying significant metabolic changes in cells by flux analysis. Copyright © 2014 Elsevier B.V. All rights reserved.

Establishment and analysis of a High-Resolution Assimilation Dataset of the water-energy cycle in China

NASA Astrophysics Data System (ADS)

Zhu, X.; Wen, X.; Zheng, Z.

2017-12-01

For better prediction and understanding of land-atmospheric interaction, in-situ observed meteorological data acquired from the China Meteorological Administration (CMA) were assimilated in the Weather Research and Forecasting (WRF) model and the monthly Green Vegetation Coverage (GVF) data, which was calculated using the Normalized Difference Vegetation Index (NDVI) of the Earth Observing System Moderate-Resolution Imaging Spectroradiometer (EOS-MODIS) and Digital Elevation Model (DEM) data of the Shuttle Radar Topography Mission (SRTM) system. Furthermore, the WRF model produced a High-Resolution Assimilation Dataset of the water-energy cycle in China (HRADC). This dataset has a horizontal resolution of 25 km for near surface meteorological data, such as air temperature, humidity, wind vectors and pressure (19 levels); soil temperature and moisture (four levels); surface temperature; downward/upward short/long radiation; 3-h latent heat flux; sensible heat flux; and ground heat flux. In this study, we 1) briefly introduce the cycling 3D-Var assimilation method and 2) compare results of meteorological elements, such as 2 m temperature and precipitation generated by the HRADC with the gridded observation data from CMA, and surface temperature and specific humidity with Global LandData Assimilation System (GLDAS) output data from the National Aeronautics and Space Administration (NASA). We found that the satellite-derived GVF from MODIS increased over southeast China compared with the default model over the whole year. The simulated results of soil temperature, net radiation and surface energy flux from the HRADC are improved compared with the control simulation and are close to GLDAS outputs. The values of net radiation from HRADC are higher than the GLDAS outputs, and the differences in the simulations are large in the east region but are smaller in northwest China and on the Qinghai-Tibet Plateau. The spatial distribution of the sensible heat flux and the ground heat flux from HRADC is consistent with the GLDAS outputs in summer. In general, the simulated results from HRADC are an improvement on the control simulation and can present the characteristics of the spatial and temporal variation of the water-energy cycle in China.

Metabolic flux profiling of recombinant protein secreting Pichia pastoris growing on glucose:methanol mixtures

PubMed Central

2012-01-01

Background The methylotrophic yeast Pichia pastoris has emerged as one of the most promising yeast hosts for the production of heterologous proteins. Mixed feeds of methanol and a multicarbon source instead of methanol as sole carbon source have been shown to improve product productivities and alleviate metabolic burden derived from protein production. Nevertheless, systematic quantitative studies on the relationships between the central metabolism and recombinant protein production in P. pastoris are still rather limited, particularly when growing this yeast on mixed carbon sources, thus hampering future metabolic network engineering strategies for improved protein production. Results The metabolic flux distribution in the central metabolism of P. pastoris growing on a mixed feed of glucose and methanol was analyzed by Metabolic Flux Analysis (MFA) using 13C-NMR-derived constraints. For this purpose, we defined new flux ratios for methanol assimilation pathways in P. pastoris cells growing on glucose:methanol mixtures. By using this experimental approach, the metabolic burden caused by the overexpression and secretion of a Rhizopus oryzae lipase (Rol) in P. pastoris was further analyzed. This protein has been previously shown to trigger the unfolded protein response in P. pastoris. A series of 13C-tracer experiments were performed on aerobic chemostat cultivations with a control and two different Rol producing strains growing at a dilution rate of 0.09 h−1 using a glucose:methanol 80:20 (w/w) mix as carbon source. The MFA performed in this study reveals a significant redistristribution of carbon fluxes in the central carbon metabolism when comparing the two recombinant strains vs the control strain, reflected in increased glycolytic, TCA cycle and NADH regeneration fluxes, as well as higher methanol dissimilation rates. Conclusions Overall, a further 13C-based MFA development to characterise the central metabolism of methylotrophic yeasts when growing on mixed methanol:multicarbon sources has been implemented, thus providing a new tool for the investigation of the relationships between central metabolism and protein production. Specifically, the study points at a limited but significant impact of the conformational stress associated to secretion of recombinant proteins on the central metabolism, occurring even at modest production levels. PMID:22569166

OptFlux: an open-source software platform for in silico metabolic engineering.

PubMed

Rocha, Isabel; Maia, Paulo; Evangelista, Pedro; Vilaça, Paulo; Soares, Simão; Pinto, José P; Nielsen, Jens; Patil, Kiran R; Ferreira, Eugénio C; Rocha, Miguel

2010-04-19

Over the last few years a number of methods have been proposed for the phenotype simulation of microorganisms under different environmental and genetic conditions. These have been used as the basis to support the discovery of successful genetic modifications of the microbial metabolism to address industrial goals. However, the use of these methods has been restricted to bioinformaticians or other expert researchers. The main aim of this work is, therefore, to provide a user-friendly computational tool for Metabolic Engineering applications. OptFlux is an open-source and modular software aimed at being the reference computational application in the field. It is the first tool to incorporate strain optimization tasks, i.e., the identification of Metabolic Engineering targets, using Evolutionary Algorithms/Simulated Annealing metaheuristics or the previously proposed OptKnock algorithm. It also allows the use of stoichiometric metabolic models for (i) phenotype simulation of both wild-type and mutant organisms, using the methods of Flux Balance Analysis, Minimization of Metabolic Adjustment or Regulatory on/off Minimization of Metabolic flux changes, (ii) Metabolic Flux Analysis, computing the admissible flux space given a set of measured fluxes, and (iii) pathway analysis through the calculation of Elementary Flux Modes. OptFlux also contemplates several methods for model simplification and other pre-processing operations aimed at reducing the search space for optimization algorithms. The software supports importing/exporting to several flat file formats and it is compatible with the SBML standard. OptFlux has a visualization module that allows the analysis of the model structure that is compatible with the layout information of Cell Designer, allowing the superimposition of simulation results with the model graph. The OptFlux software is freely available, together with documentation and other resources, thus bridging the gap from research in strain optimization algorithms and the final users. It is a valuable platform for researchers in the field that have available a number of useful tools. Its open-source nature invites contributions by all those interested in making their methods available for the community. Given its plug-in based architecture it can be extended with new functionalities. Currently, several plug-ins are being developed, including network topology analysis tools and the integration with Boolean network based regulatory models.

OptFlux: an open-source software platform for in silico metabolic engineering

PubMed Central

2010-01-01

Background Over the last few years a number of methods have been proposed for the phenotype simulation of microorganisms under different environmental and genetic conditions. These have been used as the basis to support the discovery of successful genetic modifications of the microbial metabolism to address industrial goals. However, the use of these methods has been restricted to bioinformaticians or other expert researchers. The main aim of this work is, therefore, to provide a user-friendly computational tool for Metabolic Engineering applications. Results OptFlux is an open-source and modular software aimed at being the reference computational application in the field. It is the first tool to incorporate strain optimization tasks, i.e., the identification of Metabolic Engineering targets, using Evolutionary Algorithms/Simulated Annealing metaheuristics or the previously proposed OptKnock algorithm. It also allows the use of stoichiometric metabolic models for (i) phenotype simulation of both wild-type and mutant organisms, using the methods of Flux Balance Analysis, Minimization of Metabolic Adjustment or Regulatory on/off Minimization of Metabolic flux changes, (ii) Metabolic Flux Analysis, computing the admissible flux space given a set of measured fluxes, and (iii) pathway analysis through the calculation of Elementary Flux Modes. OptFlux also contemplates several methods for model simplification and other pre-processing operations aimed at reducing the search space for optimization algorithms. The software supports importing/exporting to several flat file formats and it is compatible with the SBML standard. OptFlux has a visualization module that allows the analysis of the model structure that is compatible with the layout information of Cell Designer, allowing the superimposition of simulation results with the model graph. Conclusions The OptFlux software is freely available, together with documentation and other resources, thus bridging the gap from research in strain optimization algorithms and the final users. It is a valuable platform for researchers in the field that have available a number of useful tools. Its open-source nature invites contributions by all those interested in making their methods available for the community. Given its plug-in based architecture it can be extended with new functionalities. Currently, several plug-ins are being developed, including network topology analysis tools and the integration with Boolean network based regulatory models. PMID:20403172

Teflon probing for the flow characterization of arc-heated wind tunnel facilities

NASA Astrophysics Data System (ADS)

Gulli, Stefano; Ground, Cody; Crisanti, Matthew; Maddalena, Luca

2014-02-01

The experimental flow characterization of the arc-heated wind tunnel of the University of Texas at Arlington is investigated in this work using ablative Teflon probes in combination with total pressure measurements. A parallel analytical work, focused on the dimensional analysis of the ablation process, has been conducted with the purpose of improving existing semi-empirical correlations for the heat blockage due to the mass injection inside the boundary layer. A control volume analysis at the receding surface of the specimens is used to calculate the wall heat transfer for a non-ablating probe by including the blockage effect. The new correlations, obtained for the convective blockage, show an improvement of the correlation coefficient of 110 % with respect to those available in literature, once a new blowing parameter containing the stagnation pressure is introduced. A correlation developed by NASA during the Round-Robin program, which relates the Teflon mass loss rate to the total pressure and cold-wall heat flux measured experimentally, is also used to predict the wall heat transfer referred to the ablation temperature of Teflon. For both approaches, a simplified stagnation point convective heat transfer equation allows the average stagnation enthalpy to be calculated. Several locations downstream of the nozzle exit have been surveyed, and selected points of the facility's performance map have been used for the experimental campaign. The results show that both approaches provide similar results in terms of stagnation heat flux and enthalpy prediction with uncertainties comparable to those provided by standard intrusive heat flux probes ( δ q max < 25 %). The analysis of the Teflon's ablated surface does not reveal significant flow non-uniformities, and a 1.14 heat flux enhancement factor due to the shock-shock interaction is detectable at x = 3.5 in. from the nozzle exit plane. The results show the use of ablative probes for the flow characterization of arc plasma facilities to be promising for the dual purpose of calculating the local flow properties (i.e., heat flux and enthalpy) as well as verifying the uniformity of the flow by inspecting the footprint of the plume on the exposed surfaces.

ATR LEU fuel and burnable absorber neutronics performance optimization by fuel meat thickness variation

DOE Office of Scientific and Technical Information (OSTI.GOV)

Chang, G.S.

2008-07-15

The Advanced Test Reactor (ATR) is a high power density and high neutron flux research reactor operating in the United States. Powered with highly enriched uranium (HEU), the ATR has a maximum thermal power rating of 250 MWth. Because of the large test volumes located in high flux areas, the ATR is an ideal candidate for assessing the feasibility of converting an HEU driven reactor to a low-enriched core. The present work investigates the necessary modifications and evaluates the subsequent operating effects of this conversion. A detailed plate-by-plate MCNP ATR 1/8th core model was developed and validated for a fuelmore » cycle burnup comparison analysis. Using the current HEU U-235 enrichment of 93.0 % as a baseline, an analysis can be performed to determine the low-enriched uranium (LEU) density and U-235 enrichment required in the fuel meat to yield an equivalent K-eff between the HEU core th and the LEU core versus effective full power days (EFPD). The MCNP ATR 1/8th core model will be used to optimize the U-235 loading in the LEU core, such that the differences in K-eff and heat flux profile between the HEU and LEU core can be minimized. The depletion methodology MCWO was used to calculate K-eff versus EFPDs in this paper. The MCWO-calculated results for the LEU cases with foil (U-10Mo) types demonstrated adequate excess reactivity such that the K-eff versus EFPDs plot is similar to the reference ATR HEU case. Each HEU fuel element contains 19 fuel plates with a fuel meat thickness of 0.508 mm. In this work, the proposed LEU (U-10Mo) core conversion case with a nominal fuel meat thickness of 0.381 mm and the same U-235 enrichment (19.7 wt%) can be used to optimize the radial heat flux profile by varying the fuel meat thickness from 0.191 mm (7.5 mil) to 0.343 mm (13.5 mil) at the inner 4 fuel plates (1-4) and outer 4 fuel plates (16-19). In addition, 0.8g of a burnable absorber, Boron-10, was added in the inner and outer plates to reduce the initial excess reactivity, and the inner/outer heat flux more effectively. The optimized LEU relative radial fission heat flux profile is bounded by the reference ATR HEU case. However, to demonstrate that the LEU core fuel cycle performance can meet the Updated Final Safety Analysis Report (UFSAR) safety requirements, additional studies will be necessary to evaluate and compare safety parameters such as void reactivity and Doppler coefficients, control components worth (outer shim control cylinders, safety rods and regulating rod), and shutdown margins between the HEU and LEU cores. (author)« less

Sonar gas flux estimation by bubble insonification: application to methane bubble flux from seep areas in the outer Laptev Sea

NASA Astrophysics Data System (ADS)

Leifer, Ira; Chernykh, Denis; Shakhova, Natalia; Semiletov, Igor

2017-06-01

Sonar surveys provide an effective mechanism for mapping seabed methane flux emissions, with Arctic submerged permafrost seepage having great potential to significantly affect climate. We created in situ engineered bubble plumes from 40 m depth with fluxes spanning 0.019 to 1.1 L s-1 to derive the in situ calibration curve (Q(σ)). These nonlinear curves related flux (Q) to sonar return (σ) for a multibeam echosounder (MBES) and a single-beam echosounder (SBES) for a range of depths. The analysis demonstrated significant multiple bubble acoustic scattering - precluding the use of a theoretical approach to derive Q(σ) from the product of the bubble σ(r) and the bubble size distribution where r is bubble radius. The bubble plume σ occurrence probability distribution function (Ψ(σ)) with respect to Q found Ψ(σ) for weak σ well described by a power law that likely correlated with small-bubble dispersion and was strongly depth dependent. Ψ(σ) for strong σ was largely depth independent, consistent with bubble plume behavior where large bubbles in a plume remain in a focused core. Ψ(σ) was bimodal for all but the weakest plumes. Q(σ) was applied to sonar observations of natural arctic Laptev Sea seepage after accounting for volumetric change with numerical bubble plume simulations. Simulations addressed different depths and gases between calibration and seep plumes. Total mass fluxes (Qm) were 5.56, 42.73, and 4.88 mmol s-1 for MBES data with good to reasonable agreement (4-37 %) between the SBES and MBES systems. The seepage flux occurrence probability distribution function (Ψ(Q)) was bimodal, with weak Ψ(Q) in each seep area well described by a power law, suggesting primarily minor bubble plumes. The seepage-mapped spatial patterns suggested subsurface geologic control attributing methane fluxes to the current state of subsea permafrost.

Water vapour fluxes trends on different time scales and their relationship with weather and soil drivers: a case study from a dehesa site in South Spain

NASA Astrophysics Data System (ADS)

Polo, María José; Egüen, Marta; Andreu, Ana; Carpintero, Elisabet; Gómez-Giráldez, Pedro; Patrocinio González-Dugo, María

2017-04-01

Water vapour fluxes between the soil surface and the atmosphere constitute one of the most important components of the water cycle in the continental areas. Their regime directly affect the availability of water to plants, water storage in surface bodies, air humidity in the boundary layer, snow persistence… among others, and the list of indirectly affected processes comprises a large number of components. Water potential or wetness gradients are some of the main drivers of water vapour fluxes to the atmosphere; soil humidity is usually monitored as key variable in many hydrological and environmental studies, and its estimated series are used to calibrate and validate the modelling of certain hydrological processes. However, such results may differ when water fluxes are used instead of water state variables, such as humidity. This work shows the analysis of high resolution water vapour fluxes series from a dehesa area in South Spain where a complete energy and water fluxes/variables monitoring site has been operating for the last four years. The results include pasture and tree vegetated control points. The daily water budget calculation on both types of sites has been performed from weather and energy fluxes measurements, and soil moisture measurements, and the results have been aggregated on a weekly, monthly and seasonal basis. Comparison between observed trends of soil moisture and calculated trends of water vapour fluxes is included to show the differences arising in terms of the regime of the dominant weather variables in this type of ecosystems. The results identify significant thresholds for each weather variable driver and highlight the importance of the wind regime, which is the somehow forgotten variable in future climate impacts on hydrology. Further work is being carried out to assess water cycle potential trends under future climate conditions and their impacts on the vegetation in dehesa ecosystems.

The contribution of chemical fluxes across the sediment-water interface to carbon cycling in estuarine regions: A case study at the Rhône River mouth (NW Mediterranean)

NASA Astrophysics Data System (ADS)

Rassmann, Jens; Eitel, Eryn; Bombled, Bruno; Lansard, Bruno; Taillefert, Martial; Rabouille, Christophe

2016-04-01

Despite their small surface compared to the global oceans, continental shelf regions play a significant role in the global carbon cycle. Whereas shelf regions are seen as a sink for atmospheric CO2, estuarine regions are seen as a source. These regions are caracterized by the export of allochthonous terrigenous organic matter (OM) and the production of autochthonous marine organic carbon. An important fraction of this OM is mineralized in the sediments close to the river mouth. As a result, high exchange fluxes of dissolved inorganic carbon (DIC), total alkalinity (TA), oxygen and nutriments cross the sediment-water interface (SWI) and cause acidification of the bottom waters. Potentially, primary production in the water column is enhanced by these fluxes. Therefore, OM mineralisation in estuarine regions plays a key role in the carbon cycle as a direct producer of DIC and as a potential control factor for primary production. This work aims to quantify chemical fluxes through the SWI at the prodelta of the Rhone River (Mediterranen). In September 2015, a benthic chamber has been deployed at several stations in the prodelta to measure directly (in situ) fluxes of DIC, TA, ammonium and dissolved calcium at the SWI. At the same stations, in situ microprofiles of oxygen and pH have been recorded and sediment cores were taken for pore water extraction and analysis (DIC, TA, NH4+ and Ca2+). The results show a strong decrease of the fluxes in offshore direction indicating a strong variation of respiration rates in this direction. From pore water profiles, diffusive fluxes have been calculated and compared with the fluxes measured by the benthic chamber. This comparison enables us to include pore water profiles from previous investigations to calculate a carbon mass budget of this region.

Estimating regional greenhouse gas fluxes: An uncertainty analysis of planetary boundary layer techniques and bottom-up inventories

USDA-ARS?s Scientific Manuscript database

Quantification of regional greenhouse gas (GHG) fluxes is essential for establishing mitigation strategies and evaluating their effectiveness. Here, we used multiple top-down approaches and multiple trace gas observations at a tall tower to estimate GHG regional fluxes and evaluate the GHG fluxes de...

13 C Flux Analysis Reveals that Rebalancing Medium Amino Acid Composition can Reduce Ammonia Production while Preserving Central Carbon Metabolism of CHO Cell Cultures.

PubMed

McAtee Pereira, Allison G; Walther, Jason L; Hollenbach, Myles; Young, Jamey D

2018-02-06

13 C metabolic flux analysis (MFA) provides a rigorous approach to quantify intracellular metabolism of industrial cell lines. In this study, 13 C MFA was used to characterize the metabolic response of Chinese hamster ovary (CHO) cells to a novel medium variant designed to reduce ammonia production. Ammonia inhibits growth and viability of CHO cell cultures, alters glycosylation of recombinant proteins, and enhances product degradation. Ammonia production was reduced by manipulating the amino acid composition of the culture medium; specifically, glutamine, glutamate, asparagine, aspartate, and serine levels were adjusted. Parallel 13 C flux analysis experiments determined that, while ammonia production decreased by roughly 40%, CHO cell metabolic phenotype, growth, viability, and monoclonal antibody (mAb) titer were not significantly altered by the changes in media composition. This study illustrates how 13 C flux analysis can be applied to assess the metabolic effects of media manipulations on mammalian cell cultures. The analysis revealed that adjusting the amino acid composition of CHO cell culture media can effectively reduce ammonia production while preserving fluxes throughout central carbon metabolism. © 2018 WILEY-VCH Verlag GmbH & Co. KGaA, Weinheim.

Design and analysis of a 3D-flux flux-switching permanent magnet machine with SMC cores and ferrite magnets

NASA Astrophysics Data System (ADS)

Liu, Chengcheng; Wang, Youhua; Lei, Gang; Guo, Youguang; Zhu, Jianguo

2017-05-01

Since permanent magnets (PM) are stacked between the adjacent stator teeth and there are no windings or PMs on the rotor, flux-switching permanent magnet machine (FSPMM) owns the merits of good flux concentrating and robust rotor structure. Compared with the traditional PM machines, FSPMM can provide higher torque density and better thermal dissipation ability. Combined with the soft magnetic composite (SMC) material and ferrite magnets, this paper proposes a new 3D-flux FSPMM (3DFFSPMM). The topology and operation principle are introduced. It can be found that the designed new 3DFFSPMM has many merits over than the traditional FSPMM for it can utilize the advantages of SMC material. Moreover, the PM flux of this new motor can be regulated by using the mechanical method. 3D finite element method (FEM) is used to calculate the magnetic field and parameters of the motor, such as flux density, inductance, PM flux linkage and efficiency map. The demagnetization analysis of the ferrite magnet is also addressed to ensure the safety operation of the proposed motor.

Climate vs. carbon dioxide controls on biomass burning: a model analysis of the glacial-interglacial contrast

NASA Astrophysics Data System (ADS)

Calvo, M. Martin; Prentice, I. C.; Harrison, S. P.

2014-02-01

Climate controls fire regimes through its influence on the amount and types of fuel present and their dryness; CO2 availability, in turn, constrains primary production by limiting photosynthetic activity in plants. However, although fuel accumulation depends on biomass production, and hence CO2 availability, the links between atmospheric CO2 and biomass burning are not well known. Here a fire-enabled dynamic global vegetation model (the Land surface Processes and eXchanges model, LPX) is used to attribute glacial-interglacial changes in biomass burning to CO2 increase, which would be expected to increase primary production and therefore fuel loads even in the absence of climate change, vs. climate change effects. Four general circulation models provided Last Glacial Maximum (LGM) climate anomalies - that is, differences from the pre-industrial (PI) control climate - from the Palaeoclimate Modelling Intercomparison Project Phase 2, allowing the construction of four scenarios for LGM climate. Modelled carbon fluxes in biomass burning were corrected for the model's observed biases in contemporary biome-average values. With LGM climate and low CO2 (185 ppm) effects included, the modelled global flux was 70 to 80% lower at the LGM than in PI time. LGM climate with pre-industrial CO2 (280 ppm) however yielded unrealistic results, with global and Northern Hemisphere biomass burning fluxes greater than in the pre-industrial climate. Using the PI CO2 concentration increased the modelled LGM biomass burning fluxes for all climate models and latitudinal bands to between four and ten times their values under LGM CO2 concentration. It is inferred that a substantial part of the increase in biomass burning after the LGM must be attributed to the effect of increasing CO2 concentration on productivity and fuel load. Today, by analogy, both rising CO2 and global warming must be considered as risk factors for increasing biomass burning. Both effects need to be included in models to project future fire risks.

Heating mechanism(s) for transition layers in giants

NASA Technical Reports Server (NTRS)

Bohm-Vitense, Erika; Mena-Werth, Jose

1991-01-01

The emission-line fluxes of lines originating in the lower parts of the transition layers between stellar chromospheres and coronas are studied. Simon and Drake (1989) suspect different heating mechanisms for 'hot' and cool stars. Changes in the flux ratios for the C IV to C II emission lines support this suspicion. Large C IV/C II line flux ratios appear to be indicative of magnetically controlled heating. A correlation between excess continuum flux around 1950 A and C II emission-line fluxes are confirmed for the cooler giants (late F and cooler). Excess continuum flux correlates positively with large C IV/C II line flux ratio. The excess continuum flux corresponds to an increase in temperature by several hundred degrees in layers with a mean optical depth of about 0.03. For chromospherically active stars these layers experience a mechanical flux deposition of the order of 1 percent of the total radiative flux. This flux is tentatively identified as an MHD wave flux similar to Alfven waves.

Hydrologic sensitivity of headwater catchments to climate and landscape variability

NASA Astrophysics Data System (ADS)

Kelleher, Christa; Wagener, Thorsten; McGlynn, Brian; Nippgen, Fabian; Jencso, Kelsey

2013-04-01

Headwater streams cumulatively represent an extensive portion of the United States stream network, yet remain largely unmonitored and unmapped. As such, we have limited understanding of how these systems will respond to change, knowledge that is important for preserving these unique ecosystems, the services they provide, and the biodiversity they support. We compare responses across five adjacent headwater catchments located in Tenderfoot Creek Experimental Forest in Montana, USA, to understand how local differences may affect the sensitivity of headwaters to change. We utilize global, variance-based sensitivity analysis to understand which aspects of the physical system (e.g., vegetation, topography, geology) control the variability in hydrologic behavior across these basins, and how this varies as a function of time (and therefore climate). Basin fluxes and storages, including evapotranspiration, snow water equivalent and melt, soil moisture and streamflow, are simulated using the Distributed Hydrology-Vegetation-Soil Model (DHSVM). Sensitivity analysis is applied to quantify the importance of different physical parameters to the spatial and temporal variability of different water balance components, allowing us to map similarities and differences in these controls through space and time. Our results show how catchment influences on fluxes vary across seasons (thus providing insight into transferability of knowledge in time), and how they vary across catchments with different physical characteristics (providing insight into transferability in space).

Metabolic Flux Between Unsaturated and Saturated Fatty Acids is Controlled by the FabA:FabB Ratio in the Fully Reconstituted Fatty Acid Biosynthetic Pathway of E. coli#

PubMed Central

Xiao, Xirui; Yu, Xingye; Khosla, Chaitan

2013-01-01

The entire fatty acid biosynthetic pathway from Escherichia coli, starting from the acetyl-CoA carboxylase, has been reconstituted in vitro from fourteen purified protein components. Radiotracer analysis verified stoichiometric conversion of acetyl-CoA and NAD(P)H into the free fatty acid product, allowing implementation of a facile spectrophotometric assay for kinetic analysis of this multi-enzyme system. At steady state, a maximum turnover rate of 0.5 s−1 was achieved. Under optimal turnover conditions, the predominant products were C16 and C18 saturated as well as monounsaturated fatty acids. The reconstituted system allowed us to quantitatively interrogate the factors that influence metabolic flux toward unsaturated versus saturated fatty acids. In particular, the concentrations of the dehydratase FabA and the β-ketoacyl synthase FabB were found to be crucial for controlling this property. By altering these variables, the percentage of unsaturated fatty acid produced could be adjusted between 10 and 50% without significantly affecting the maximum turnover rate of the pathway. Our reconstituted system provides a powerful tool to understand and engineer rate-limiting and regulatory steps in this complex and practically significant metabolic pathway. PMID:24147979

Sodium Flux Growth of Bulk Gallium Nitride

NASA Astrophysics Data System (ADS)

Von Dollen, Paul Martin

This dissertation focused on development of a novel apparatus and techniques for crystal growth of bulk gallium nitride (GaN) using the sodium flux method. Though several methods exist to produce bulk GaN, none have been commercialized on an industrial scale. The sodium flux method offers potentially lower cost production due to relatively mild process conditions while maintaining high crystal quality. But the current equipment and methods for sodium flux growth of bulk GaN are generally not amenable to large-scale crystal growth or in situ investigation of growth processes, which has hampered progress. A key task was to prevent sodium loss or migration from the sodium-gallium growth melt while permitting N2 gas to access the growing crystal, which was accomplished by implementing a reflux condensing stem along with a reusable sealed capsule. The reflux condensing stem also enabled direct monitoring and control of the melt temperature, which has not been previously reported for the sodium flux method. Molybdenum-based materials were identified from a corrosion study as candidates for direct containment of the corrosive sodium-gallium melt. Successful introduction of these materials allowed implementation of a crucible-free containment system, which improved process control and can potentially reduce crystal impurity levels. Using the new growth system, the (0001) Ga face (+c plane) growth rate was >50 mum/hr, which is the highest bulk GaN growth rate reported for the sodium flux method. Omega X-ray rocking curve (?-XRC) measurements indicated the presence of multiple grains, though full width at half maximum (FWHM) values for individual peaks were <100 arcseconds. Oxygen impurity concentrations as measured by secondary ion mass spectroscopy (SIMS) were >1020 atoms/cm3, possibly due to reactor cleaning and handling procedures. This dissertation also introduced an in situ technique to correlate changes in N2 pressure with dissolution of nitrogen and precipitation of GaN from the sodium-gallium melt. Different stages of N2 pressure decay were identified and linked to distinct modes of GaN crystal growth. Based on this analysis, the highest growth rate may have up to 90 mum/hr, and did not appear to be mass-transport limited, in contrast to previous reports. Several refinements and improvements of the novel equipment and methods introduced were also explored, all of which have potential to further advance state of the art sodium flux growth of bulk GaN.

Nonequilibrium Energy Transfer at Nanoscale: A Unified Theory from Weak to Strong Coupling

PubMed Central

Wang, Chen; Ren, Jie; Cao, Jianshu

2015-01-01

Unraveling the microscopic mechanism of quantum energy transfer across two-level systems provides crucial insights to the optimal design and potential applications of low-dimensional nanodevices. Here, we study the non-equilibrium spin-boson model as a minimal prototype and develop a fluctuation-decoupled quantum master equation approach that is valid ranging from the weak to the strong system-bath coupling regime. The exact expression of energy flux is analytically established, which dissects the energy transfer as multiple boson processes with even and odd parity. Our analysis provides a unified interpretation of several observations, including coherence-enhanced heat flux and negative differential thermal conductance. The results will have broad implications for the fine control of energy transfer in nano-structural devices. PMID:26152705

Tissue responses to fractional transient heating with sinusoidal heat flux condition on skin surface.

PubMed

Ezzat, Magdy A; El-Bary, Alaa A; Al-Sowayan, Noorah S

2016-10-01

A fractional model of Bioheat equation for describing quantitatively the thermal responses of skin tissue under sinusoidal heat flux conditions on skin surface is given. Laplace transform technique is used to obtain the solution in a closed form. The resulting formulation is applied to one-dimensional application to investigate the temperature distribution in skin with instantaneous surface heating for different cases. According to the numerical results and its graphs, conclusion about the fractional bioheat transfer equation has been constructed. Sensitivity analysis is performed to explore the thermal effects of various control parameters on tissue temperature. The comparisons are made with the results obtained in the case of the absence of time-fractional order. © 2016 Japanese Society of Animal Science. © 2016 Japanese Society of Animal Science.

Molecular mechanism of acetylcholine receptor-controlled ion translocation across cell membranes

PubMed Central

Cash, Derek J.; Hess, George P.

1980-01-01

Two molecular processes, the binding of acetylcholine to the membrane-bound acetylcholine receptor protein and the receptor-controlled flux rates of specific inorganic ions, are essential in determining the electrical membrane potential of nerve and muscle cells. The measurements reported establish the relationship between the two processes: the acetylcholine receptor-controlled transmembrane ion flux of 86Rb+ and the concentration of carbamoylcholine, a stable analog of acetylcholine. A 200-fold concentration range of carbamoylcholine was used. The flux was measured in the millisecond-to-minute time region by using a quench flow technique with membrane vesicles prepared from the electric organ of Electrophorus electricus in eel Ringer's solution at pH 7.0 and 1°C. The technique makes possible the study of the transmembrane transport of specific ions, with variable known internal and external ion concentrations, in a system in which a determinable number of receptors is exposed to a known concentration of ligand. The response curve of ion flux to ligand was sigmoidal with an average maximum rate of 84 sec-1. Carbamoylcholine induced inactivation of the receptor with a maximum rate of 2.7 sec-1 and a different ligand dependence so that it was fast relative to ion flux at low ligand concentration but slow relative to ion flux at high ligand concentration. The simplest model that fits the data consists of receptor in the active and inactive states in ligand-controlled equilibria. Receptor inactivation occurs with one or two ligand molecules bound. For channel opening, two ligand molecules bound to the active state are required, and cooperativity results from the channel opening process itself. With carbamoylcholine, apparently, the equilibrium position for the channel opening step is only one-fourth open. The integrated rate equation, based on the model, predicts the time dependence of receptor-controlled ion flux over the concentration range of carbamoylcholine investigated. The values of the constants in the rate equation form the basis for predicting receptor-controlled changes in the transmembrane potential of cells and the conditions leading to transmission of signals between cells. PMID:6928684

Constraining Genome-Scale Models to Represent the Bow Tie Structure of Metabolism for 13C Metabolic Flux Analysis

PubMed Central

Ando, David; Singh, Jahnavi; Keasling, Jay D.; García Martín, Héctor

2018-01-01

Determination of internal metabolic fluxes is crucial for fundamental and applied biology because they map how carbon and electrons flow through metabolism to enable cell function. 13C Metabolic Flux Analysis (13C MFA) and Two-Scale 13C Metabolic Flux Analysis (2S-13C MFA) are two techniques used to determine such fluxes. Both operate on the simplifying approximation that metabolic flux from peripheral metabolism into central “core” carbon metabolism is minimal, and can be omitted when modeling isotopic labeling in core metabolism. The validity of this “two-scale” or “bow tie” approximation is supported both by the ability to accurately model experimental isotopic labeling data, and by experimentally verified metabolic engineering predictions using these methods. However, the boundaries of core metabolism that satisfy this approximation can vary across species, and across cell culture conditions. Here, we present a set of algorithms that (1) systematically calculate flux bounds for any specified “core” of a genome-scale model so as to satisfy the bow tie approximation and (2) automatically identify an updated set of core reactions that can satisfy this approximation more efficiently. First, we leverage linear programming to simultaneously identify the lowest fluxes from peripheral metabolism into core metabolism compatible with the observed growth rate and extracellular metabolite exchange fluxes. Second, we use Simulated Annealing to identify an updated set of core reactions that allow for a minimum of fluxes into core metabolism to satisfy these experimental constraints. Together, these methods accelerate and automate the identification of a biologically reasonable set of core reactions for use with 13C MFA or 2S-13C MFA, as well as provide for a substantially lower set of flux bounds for fluxes into the core as compared with previous methods. We provide an open source Python implementation of these algorithms at https://github.com/JBEI/limitfluxtocore. PMID:29300340

Comparative study of flux pinning, creep and critical currents between YBaCuO crystals with and without Y2BaCuO5 inclusions

NASA Technical Reports Server (NTRS)

Murakami, Masato; Gotoh, Satoshi; Fujimoto, Hiroyuki; Koshizuka, Naoki; Tanaka, Shoji

1991-01-01

In the Y-Ba-Cu-O system, YBa2Cu3O(x) phase is produced by the following peritectic reaction: Y2BaCuO5 + liquid yields 2YBa2Cu3O(x). Through the control of processing conditions and starting compositions, it becomes possible to fabricate large crystals containing fine Y2BaCuO5(211) inclusions. Such crystals exhibit Jc values exceeding 10000 A/sq cm at 77 K and 1T. Recently, researchers developed a novel process which can control the volume fraction of 211 inclusions. Elimination of 211 inclusions is also possible. In this study, researchers prepared YBaCuO crystals with and without 211 inclusions using the novel process, and compared flux pinning, flux creep and critical currents. Magnetic field dependence of Jc for YBaCuO crystals with and with 211 inclusions is shown. It is clear that fine 211 inclusions can contribute to flux pinning. It was also found that flux creep rate could be reduced by increasing flux pinning force. Critical current density estimates based on the conventional flux pinning theory were in good agreement with experimental results.

Effect of biological and coagulation pre-treatments to control organic and biofouling potential components of ultrafiltration membrane in the treatment of lake water.

PubMed

Pramanik, Biplob Kumar; Kajol, Annaduzzaman; Suja, Fatihah; Md Zain, Shahrom

2017-03-01

Biological aerated filter (BAF), sand filtration (SF), alum and Moringa oleifera coagulation were investigated as a pre-treatment for reducing the organic and biofouling potential component of an ultrafiltration (UF) membrane in the treatment of lake water. The carbohydrate content was mainly responsible for reversible fouling of the UF membrane compared to protein or dissolved organic carbon (DOC) content. All pre-treatment could effectively reduce these contents and led to improve the UF filterability. Both BAF and SF markedly led to improvement in flux than coagulation processes, and alum gave greater flux than M. oleifera. This was attributed to the effective removal and/or breakdown of high molecular weight (MW) organics by biofilters. BAF led to greater improvement in flux than SF, due to greater breakdown of high MW organics, and this was also confirmed by the attenuated total reflection-Fourier transform infrared spectroscopy analysis. Coagulation processes were ineffective in removing biofouling potential components, whereas both biofilters were very effective as shown by the reduction of low MW organics, biodegradable dissolved organic carbon and assimilable organic carbon contents. This study demonstrated the potential of biological pre-treatments for reducing organic and biofouling potential component and thus improving flux for the UF of lake water treatment.

Challenges and benefits on long-term eddy covariance measurements over lakes

NASA Astrophysics Data System (ADS)

Vesala, Timo; Golub, Malgorzata; Desai, Ankur; Heiskanen, Jouni; Provenzale, Maria; Rantakari, Miitta; Ojala, Anne; Mammarella, Ivan

2017-04-01

Eddy Covariance (EC) data on carbon dioxide fluxes is presently available on about 30 lakes but the time series are mostly short, order of one year. Longer EC series together with chamber measurements and appropriate auxiliary data on water column allow for more accurate estimates of the aquatic component in terrestrial carbon balance and analysis of the environmental controls. We discuss on challenges for long-term EC measurements over freshwater ecosystems and demonstrate the benefits of EC data for carbon cycle studies via examples from long-term sites EC sites in Finland. We discuss on the auxiliary measurements needed and the general design of the whole measurement set-up to get representative information. We discuss on challenges related to the CO2 flux partitioning for freshwater ecosystems and introduce a new method to estimate the net primary productivity (NPP) on EC data, which is superior to more traditional methods (bottle incubations, 14C technique) with a poor temporal resolution. Finally, we collected and analyzed CO2 fluxes from 19 globally distributed lakes and reservoirs representing six climate zones. The mean flux was c. 0.3 micro mole / m2 s. We applied a simple upscaling to the direct observations and ended up to the estimate which is about half of the current emission estimate for lentic systems.

Combining Flux Balance and Energy Balance Analysis for Large-Scale Metabolic Network: Biochemical Circuit Theory for Analysis of Large-Scale Metabolic Networks

NASA Technical Reports Server (NTRS)

Beard, Daniel A.; Liang, Shou-Dan; Qian, Hong; Biegel, Bryan (Technical Monitor)

2001-01-01

Predicting behavior of large-scale biochemical metabolic networks represents one of the greatest challenges of bioinformatics and computational biology. Approaches, such as flux balance analysis (FBA), that account for the known stoichiometry of the reaction network while avoiding implementation of detailed reaction kinetics are perhaps the most promising tools for the analysis of large complex networks. As a step towards building a complete theory of biochemical circuit analysis, we introduce energy balance analysis (EBA), which compliments the FBA approach by introducing fundamental constraints based on the first and second laws of thermodynamics. Fluxes obtained with EBA are thermodynamically feasible and provide valuable insight into the activation and suppression of biochemical pathways.

Effect of amino acid supplementation on titer and glycosylation distribution in hybridoma cell cultures-Systems biology-based interpretation using genome-scale metabolic flux balance model and multivariate data analysis.

PubMed

Reimonn, Thomas M; Park, Seo-Young; Agarabi, Cyrus D; Brorson, Kurt A; Yoon, Seongkyu

2016-09-01

Genome-scale flux balance analysis (FBA) is a powerful systems biology tool to characterize intracellular reaction fluxes during cell cultures. FBA estimates intracellular reaction rates by optimizing an objective function, subject to the constraints of a metabolic model and media uptake/excretion rates. A dynamic extension to FBA, dynamic flux balance analysis (DFBA), can calculate intracellular reaction fluxes as they change during cell cultures. In a previous study by Read et al. (2013), a series of informed amino acid supplementation experiments were performed on twelve parallel murine hybridoma cell cultures, and this data was leveraged for further analysis (Read et al., Biotechnol Prog. 2013;29:745-753). In order to understand the effects of media changes on the model murine hybridoma cell line, a systems biology approach is applied in the current study. Dynamic flux balance analysis was performed using a genome-scale mouse metabolic model, and multivariate data analysis was used for interpretation. The calculated reaction fluxes were examined using partial least squares and partial least squares discriminant analysis. The results indicate media supplementation increases product yield because it raises nutrient levels extending the growth phase, and the increased cell density allows for greater culture performance. At the same time, the directed supplementation does not change the overall metabolism of the cells. This supports the conclusion that product quality, as measured by glycoform assays, remains unchanged because the metabolism remains in a similar state. Additionally, the DFBA shows that metabolic state varies more at the beginning of the culture but less by the middle of the growth phase, possibly due to stress on the cells during inoculation. © 2016 American Institute of Chemical Engineers Biotechnol. Prog., 32:1163-1173, 2016. © 2016 American Institute of Chemical Engineers.

Statistical intensity variation analysis for rapid volumetric imaging of capillary network flux

PubMed Central

Lee, Jonghwan; Jiang, James Y.; Wu, Weicheng; Lesage, Frederic; Boas, David A.

2014-01-01

We present a novel optical coherence tomography (OCT)-based technique for rapid volumetric imaging of red blood cell (RBC) flux in capillary networks. Previously we reported that OCT can capture individual RBC passage within a capillary, where the OCT intensity signal at a voxel fluctuates when an RBC passes the voxel. Based on this finding, we defined a metric of statistical intensity variation (SIV) and validated that the mean SIV is proportional to the RBC flux [RBC/s] through simulations and measurements. From rapidly scanned volume data, we used Hessian matrix analysis to vectorize a segment path of each capillary and estimate its flux from the mean of the SIVs gathered along the path. Repeating this process led to a 3D flux map of the capillary network. The present technique enabled us to trace the RBC flux changes over hundreds of capillaries with a temporal resolution of ~1 s during functional activation. PMID:24761298

Monte Carlo simulation of thermal neutron flux of americium-beryllium source used in neutron activation analysis

NASA Astrophysics Data System (ADS)

Didi, Abdessamad; Dadouch, Ahmed; Bencheikh, Mohamed; Jai, Otman

2017-09-01

The neutron activation analysis is a method of exclusively elemental analysis. Its implementation of irradiates the sample which can be analyzed by a high neutron flux, this method is widely used in developed countries with nuclear reactors or accelerators of particle. The purpose of this study is to develop a prototype to increase the neutron flux such as americium-beryllium and have the opportunity to produce radioisotopes. Americium-beryllium is a mobile source of neutron activity of 20 curie, and gives a thermal neutron flux of (1.8 ± 0.0007) × 106 n/cm2 s when using water as moderator, when using the paraffin, the thermal neutron flux increases to (2.2 ± 0.0008) × 106 n/cm2 s, in the case of adding two solid beryllium barriers, the distance between them is 24 cm, parallel and symmetrical about the source, the thermal flux is increased to (2.5 ± 0.0008) × 106 n/cm2 s and in the case of multi-source (6 sources), with-out barriers, increases to (1.17 ± 0.0008) × 107 n/cm2 s with a rate of increase equal to 4.3 and with the both barriers flux increased to (1.37 ± 0.0008) × 107 n/cm2 s.

Metabolic flux analysis of heterotrophic growth in Chlamydomonas reinhardtii.

PubMed

Boyle, Nanette R; Sengupta, Neelanjan; Morgan, John A

2017-01-01

Despite the wealth of knowledge available for C. reinhardtii, the central metabolic fluxes of growth on acetate have not yet been determined. In this study, 13C-metabolic flux analysis (13C-MFA) was used to determine and quantify the metabolic pathways of primary metabolism in C. reinhardtii cells grown under heterotrophic conditions with acetate as the sole carbon source. Isotopic labeling patterns of compartment specific biomass derived metabolites were used to calculate the fluxes. It was found that acetate is ligated with coenzyme A in the three subcellular compartments (cytosol, mitochondria and plastid) included in the model. Two citrate synthases were found to potentially be involved in acetyl-coA metabolism; one localized in the mitochondria and the other acting outside the mitochondria. Labeling patterns demonstrate that Acetyl-coA synthesized in the plastid is directly incorporated in synthesis of fatty acids. Despite having a complete TCA cycle in the mitochondria, it was also found that a majority of the malate flux is shuttled to the cytosol and plastid where it is converted to oxaloacetate providing reducing equivalents to these compartments. When compared to predictions by flux balance analysis, fluxes measured with 13C-MFA were found to be suboptimal with respect to biomass yield; C. reinhardtii sacrifices biomass yield to produce ATP and reducing equivalents.

Isotopically nonstationary 13C flux analysis of changes in Arabidopsis thaliana leaf metabolism due to high light acclimation

DOE PAGES

Ma, Fangfang; Jazmin, Lara J.; Young, Jamey D.; ...

2014-11-03

Improving plant productivity is an important aim for metabolic engineering. There are few comprehensive methods that quantitatively describe leaf metabolism, although such information would be valuable for increasing photosynthetic capacity, enhancing biomass production, and rerouting carbon flux toward desirable end products. Isotopically nonstationary metabolic flux analysis (INST-MFA) has been previously applied to map carbon fluxes in photoautotrophic bacteria, which involves model-based regression of transient 13C-labeling patterns of intracellular metabolites. However, experimental and computational difficulties have hindered its application to terrestrial plant systems. Here, we performed in vivo isotopic labeling of Arabidopsis thaliana rosettes with 13CO 2 and estimated fluxes throughoutmore » leaf photosynthetic metabolism by INST-MFA. Plants grown at 200 µmol m $-$2s $-$1 light were compared with plants acclimated for 9 d at an irradiance of 500 µmol∙m $-$2∙s $-$1. Approximately 1,400 independent mass isotopomer measurements obtained from analysis of 37 metabolite fragment ions were regressed to estimate 136 total fluxes (54 free fluxes) under each condition. The results provide a comprehensive description of changes in carbon partitioning and overall photosynthetic flux after long-term developmental acclimation of leaves to high light. Despite a doubling in the carboxylation rate, the photorespiratory flux increased from 17 to 28% of net CO 2 assimilation with high-light acclimation (Vc/Vo: 3.5:1 vs. 2.3:1, respectively). In conclusion, this study highlights the potential of 13C INST-MFA to describe emergent flux phenotypes that respond to environmental conditions or plant physiology and cannot be obtained by other complementary approaches.« less

Using metabolic flux data to further constrain the metabolic solution space and predict internal flux patterns: the Escherichia coli spectrum.

PubMed

Wiback, Sharon J; Mahadevan, Radhakrishnan; Palsson, Bernhard Ø

2004-05-05

Constraint-based metabolic modeling has been used to capture the genome-scale, systems properties of an organism's metabolism. The first generation of these models has been built on annotated gene sequence. To further this field, we now need to develop methods to incorporate additional "omic" data types including transcriptomics, metabolomics, and fluxomics to further facilitate the construction, validation, and predictive capabilities of these models. The work herein combines metabolic flux data with an in silico model of central metabolism of Escherichia coli for model centric integration of the flux data. The extreme pathways for this network, which define the allowable solution space for all possible flux distributions, are analyzed using the alpha-spectrum. The alpha-spectrum determines which extreme pathways can and cannot contribute to the metabolic flux distribution for a given condition and gives the allowable range of weightings on each extreme pathway that can contribute. Since many extreme pathways cannot be used under certain conditions, the result is a "condition-specific" solution space that is a subset of the original solution space. The alpha-spectrum results are used to create a "condition-specific" extreme pathway matrix that can be analyzed using singular value decomposition (SVD). The first mode of the SVD analysis characterizes the solution space for a given condition. We show that SVD analysis of the alpha-spectrum extreme pathway matrix that incorporates measured uptake and byproduct secretion rates, can predict internal flux trends for different experimental conditions. These predicted internal flux trends are, in general, consistent with the flux trends measured using experimental metabolic flux analysis techniques. Copyright 2004 Wiley Periodicals, Inc.

Electric control of the heat flux through electrophononic effects

NASA Astrophysics Data System (ADS)

Seijas-Bellido, Juan Antonio; Aramberri, Hugo; Íñiguez, Jorge; Rurali, Riccardo

2018-05-01

We demonstrate a fully electric control of the heat flux, which can be continuously modulated by an externally applied electric field in PbTiO3, a prototypical ferroelectric perovskite, revealing the mechanisms by which experimentally accessible fields can be used to tune the thermal conductivity by as much as 50% at room temperature.

Validating soil denitrification models based on laboratory N_{2} and N_{2}O fluxes and underlying processes derived by stable isotope approaches

NASA Astrophysics Data System (ADS)

Well, Reinhard; Böttcher, Jürgen; Butterbach-Bahl, Klaus; Dannenmann, Michael; Deppe, Marianna; Dittert, Klaus; Dörsch, Peter; Horn, Marcus; Ippisch, Olaf; Mikutta, Robert; Müller, Carsten; Müller, Christoph; Senbayram, Mehmet; Vogel, Hans-Jörg; Wrage-Mönnig, Nicole

2016-04-01

Robust denitrification data suitable to validate soil N2 fluxes in denitrification models are scarce due to methodical limitations and the extreme spatio-temporal heterogeneity of denitrification in soils. Numerical models have become essential tools to predict denitrification at different scales. Model performance could either be tested for total gaseous flux (NO + N2O + N2), individual denitrification products (e.g. N2O and/or NO) or for the effect of denitrification factors (e.g. C-availability, respiration, diffusivity, anaerobic volume, etc.). While there are numerous examples for validating N2O fluxes, there are neither robust field data of N2 fluxes nor sufficiently resolved measurements of control factors used as state variables in the models. To the best of our knowledge there has been only one published validation of modelled soil N2 flux by now, using a laboratory data set to validate an ecosystem model. Hence there is a need for validation data at both, the mesocosm and the field scale including validation of individual denitrification controls. Here we present the concept for collecting model validation data which is be part of the DFG-research unit "Denitrification in Agricultural Soils: Integrated Control and Modelling at Various Scales (DASIM)" starting this year. We will use novel approaches including analysis of stable isotopes, microbial communities, pores structure and organic matter fractions to provide denitrification data sets comprising as much detail on activity and regulation as possible as a basis to validate existing and calibrate new denitrification models that are applied and/or developed by DASIM subprojects. The basic idea is to simulate "field-like" conditions as far as possible in an automated mesocosm system without plants in order to mimic processes in the soil parts not significantly influenced by the rhizosphere (rhizosphere soils are studied by other DASIM projects). Hence, to allow model testing in a wide range of conditions, denitrification control factors will be varied in the initial settings (pore volume, plant residues, mineral N, pH) but also over time, where moisture, temperature, and mineral N will be manipulated according to typical time patterns in the field. This will be realized by including precipitation events, fertilization (via irrigation), drainage (via water potential) and temperature in the course of incubations. Moreover, oxygen concentration will be varied to simulate anaerobic events. These data will be used to calibrate the newly to develop DASIM models as well as existing denitrification models. One goal of DASIM is to create a public data base as a joint basis for model testing by denitrification modellers. Therefore we invite contributions of suitable data-sets from the scientific community. Requirements will be briefly outlined.

Barrier island breach evolution: Alongshore transport and bay-ocean pressure gradient interactions

USGS Publications Warehouse

Safak, Ilgar; Warner, John C.; List, Jeffrey

2016-01-01

Physical processes controlling repeated openings and closures of a barrier island breach between a bay and the open ocean are studied using aerial photographs and atmospheric and hydrodynamic observations. The breach site is located on Pea Island along the Outer Banks, separating Pamlico Sound from the Atlantic Ocean. Wind direction was a major control on the pressure gradients between the bay and the ocean to drive flows that initiate or maintain the breach opening. Alongshore sediment flux was found to be a major contributor to breach closure. During the analysis period from 2011 to 2016, three hurricanes had major impacts on the breach. First, Hurricane Irene opened the breach with wind-driven flow from bay to ocean in August 2011. Hurricane Sandy in October 2012 quadrupled the channel width from pressure gradient flows due to water levels that were first higher on the ocean side and then higher on the bay side. The breach closed sometime in Spring 2013, most likely due to an event associated with strong alongshore sediment flux but minimal ocean-bay pressure gradients. Then, in July 2014, Hurricane Arthur briefly opened the breach again from the bay side, in a similar fashion to Irene. In summary, opening and closure of breaches are shown to follow a dynamic and episodic balance between along-channel pressure gradient driven flows and alongshore sediment fluxes.

Effect of biological activated carbon pre-treatment to control organic fouling in the microfiltration of biologically treated secondary effluent.

PubMed

Pramanik, Biplob Kumar; Roddick, Felicity A; Fan, Linhua

2014-10-15

Biological activated carbon (BAC) filtration was investigated as a pre-treatment for reducing the organic fouling of a microfiltration membrane (0.1 μm polyvinylidene fluoride) in the treatment of a biologically treated secondary effluent (BTSE) from a municipal wastewater treatment plant. BAC treatment of the BTSE resulted in a marked improvement in permeate flux, which was attributed to the effective removal of organic foulants and particulates. Although the BAC removed significantly less dissolved organic carbon than the granular activated carbon (GAC) treatment which was used as a control for comparison, it led to a markedly greater flux. This was attributed to the effective removal of the very high molecular weight substances such as biopolymers by the BAC through biodegradation and adsorption of those molecules on the biofilm. Size exclusion chromatography showed the BAC treatment led to approximately 30% reduction in these substances, whereas the GAC did not greatly remove these molecules. The BAC treatment led to a greater reduction of loosely-attached and firmly-attached membrane surface foulant, and this was confirmed by attenuated total reflection-fourier transform infrared spectroscopy analysis. This study demonstrated the potential of BAC pre-treatment for reducing organic fouling and thus improving flux for the microfiltration of BTSE. Copyright © 2014 Elsevier Ltd. All rights reserved.

Automated Heat-Flux-Calibration Facility

NASA Technical Reports Server (NTRS)

Liebert, Curt H.; Weikle, Donald H.

1989-01-01

Computer control speeds operation of equipment and processing of measurements. New heat-flux-calibration facility developed at Lewis Research Center. Used for fast-transient heat-transfer testing, durability testing, and calibration of heat-flux gauges. Calibrations performed at constant or transient heat fluxes ranging from 1 to 6 MW/m2 and at temperatures ranging from 80 K to melting temperatures of most materials. Facility developed because there is need to build and calibrate very-small heat-flux gauges for Space Shuttle main engine (SSME).Includes lamp head attached to side of service module, an argon-gas-recirculation module, reflector, heat exchanger, and high-speed positioning system. This type of automated heat-flux calibration facility installed in industrial plants for onsite calibration of heat-flux gauges measuring fluxes of heat in advanced gas-turbine and rocket engines.

Physical Controls on Biogeochemical Processes in Intertidal Zones of Beach Aquifers

NASA Astrophysics Data System (ADS)

Heiss, James W.; Post, Vincent E. A.; Laattoe, Tariq; Russoniello, Christopher J.; Michael, Holly A.

2017-11-01

Marine ecosystems are sensitive to inputs of chemicals from submarine groundwater discharge. Tidally influenced saltwater-freshwater mixing zones in beach aquifers can host biogeochemical transformations that modify chemical loads prior to discharge. A numerical variable-density groundwater flow and reactive transport model was used to evaluate the physical controls on reactivity for mixing-dependent and mixing-independent reactions in beach aquifers, represented as denitrification and sulfate reduction, respectively. A sensitivity analysis was performed across typical values of tidal amplitude, hydraulic conductivity, terrestrial freshwater flux, beach slope, dispersivity, and DOC reactivity. For the model setup and conditions tested, the simulations demonstrate that denitrification can remove up to 100% of terrestrially derived nitrate, and sulfate reduction can transform up to 8% of seawater-derived sulfate prior to discharge. Tidally driven mixing between saltwater and freshwater promotes denitrification along the boundary of the intertidal saltwater circulation cell in pore water between 1 and 10 ppt. The denitrification zone occupies on average 49% of the mixing zone. Denitrification rates are highest on the landward side of the circulation cell and decrease along circulating flow paths. Reactivity for mixing-dependent reactions increases with the size of the mixing zone and solute supply, while mixing-independent reactivity is controlled primarily by solute supply. The results provide insights into the types of beaches most efficient in altering fluxes of chemicals prior to discharge and could be built upon to help engineer beaches to enhance reactivity. The findings have implications for management to protect coastal ecosystems and the estimation of chemical fluxes to the ocean.

A New Unified Analysis of Estimate Errors by Model-Matching Phase-Estimation Methods for Sensorless Drive of Permanent-Magnet Synchronous Motors and New Trajectory-Oriented Vector Control, Part I

NASA Astrophysics Data System (ADS)

Shinnaka, Shinji; Sano, Kousuke

This paper presents a new unified analysis of estimate errors by model-matching phase-estimation methods such as rotor-flux state-observers, back EMF state-observers, and back EMF disturbance-observers, for sensorless drive of permanent-magnet synchronous motors. Analytical solutions about estimate errors, whose validity is confirmed by numerical experiments, are rich in universality and applicability. As an example of universality and applicability, a new trajectory-oriented vector control method is proposed, which can realize directly quasi-optimal strategy minimizing total losses with no additional computational loads by simply orienting one of vector-control coordinates to the associated quasi-optimal trajectory. The coordinate orientation rule, which is analytically derived, is surprisingly simple. Consequently the trajectory-oriented vector control method can be applied to a number of conventional vector control systems using one of the model-matching phase-estimation methods.

Microprocessor in controlled transdermal drug delivery of anti-cancer drugs.

PubMed

Chandrashekar, N S; Shobha Rani, R H

2009-12-01

Microprocessor controlled transdermal delivery of anticancer drugs 5-Fluorouracil (5-FU) and 6-Mercaptopurine (6-MP) was developed and in vitro evaluation was done. Drugs were loaded based on the pharmacokinetics parameters. In vitro diffusion studies were carried at different current density (0.0, 0.1, 0.22, 0.50 mA/cm2). The patches were evaluated for the drug content, thickness, weight, folding endurance, flatness, thumb tack test and adhesive properties all were well with in the specification of transdermal patches with elegant and transparent in appearance. In vitro permeation studies through human cadaver skin showed, passive delivery (0.0 mA/cm2) of 6-MP was low. As the current density was progressively increased, the flux also increased. the flux also increased with 0.1 mA/cm2 for 15-20 min, but it was less than desired flux, 0.2 mA/cm2 for 30 min showed better flux than 0.1 mA/cm2 current, but lag time was more than 4 h, 0.5 mA/cm2 current for more than 1 h, flux was >159 microg/cm2 h which was desired flux for 6-MP. 5-FU flux reached the minimum effective concentration (MEC) of 54 microg/cm2 h with 0.5 mA/cm2 current for 30-45 min, drug concentration were within the therapeutic window in post-current phase. We concluded from Ohm's Law that as the resistance decreases, current increases. Skin resistance decrease with increase in time and current, increase in the drug permeation. Interestingly, for all investigated current densities, as soon as the current was switched off, 5-FU and 6-MP flux decreased fairly, but the controlled drug delivery can be achieved by switching the current for required period of time.

Tree CH4 fluxes in forestry drained peatland in southern Finland

NASA Astrophysics Data System (ADS)

Haikarainen, Iikka; Putkinen, Anuliina; Pyykkö, Petteri; Halmeenmäki, Elisa; Pihlatie, Mari

2017-04-01

Methane (CH4) is among the most important greenhouse gases and its atmospheric concentration is increasing. Boreal forests are commonly considered a net sink of atmospheric CH4 due to CH4 consuming bacteria in aerated soil layers. Recent studies have, however, demonstrated that trees are capable of emitting CH4 from their stems and shoots by transporting anaerobically produced CH4 from deeper soil layers to the atmosphere. Furthermore, trees may act as independent sources of CH4. We have measured tree stem CH4 exchange of boreal tree species at Lettosuo, a nutrient rich peatland forest in Tammela, southern Finland (60˚ 38' N, 23˚ 57' E), using the static chamber technique. Three species, downy birch (Betula pubescens), Norway spruce (Picea abies) and Scots pine (Pinus sylvestris), were selected under investigation as they represent common boreal tree species. Fluxes of CH4 were measured during 7.6.2016 - 17.10.2016 from in total 25 sample trees growing on two different plots: a treatment plot where all the pines were removed to raise the water table level (WTL) and a control plot. Three birches from the treatment plot were selected to measure CH4 flux variation within vertical profile of the trees. Characterization of microbial communities, quantification of methanogenic and methanotrophic functional genes, and measurements of potential CH4 production and consumption from peat profile and forest floor moss samples were also carried out to obtain insight to the CH4 flux dynamics at the studied sites. The pine removal treatment did not markedly change the average WTL, but it made the WTL more variable with frequently 10-15 cm closer to soil surface compared to the WTL on the control plot. We found small and variable CH4 emissions from the stems of trees on both of the plots, while occasional consumption of CH4 was also present. Generally the CH4 emissions were higher and more dominant at the treatment plot compared to the control plot, and the fluxes were significantly different between the plots (p < 0.001). The CH4 emission rates from the birches at the treatment plot decreased exponentially in the stem vertical profile. Clear seasonal flux dynamics or significant differences in the CH4 flux between the species were not found at either of the plots. Microbial experiments showed that anaerobic CH4 production, CH4 oxidation potential (under 1000 ppm CH4) and the amount of methanogens were higher in the peat of the treatment site. The difference in the CH4 flux rates between the plots indicates that the WTL is a major regulator of tree CH4 emissions on forestry drained peatlands, supporting our hypothesis that the stem emitted CH4 originates from anaerobic soil conditions. This hypothesis is further supported by the results of the microbial analysis and by the observation that more CH4 is emitting from the lower parts of the stems compared to the upper stem.

Aeolian snow transport from wind tunnel experiments

NASA Astrophysics Data System (ADS)

Paterna, E.; Crivelli, P.; Lehning, M.

2016-12-01

Aeolian snow transport has a significant impact on snow redistribution in mountains, prairies as well as on glaciers, ice shelves, and sea ice. In all these environments, the local mass balance is highly influenced by Aeolian snow transport. The dynamics of snow saltation has a high impact on the land surface processes shaping these regions. More specifically, the observed high intermittency of saltation fluxes poses a problem for saltation models and needs to be better understood. We therefore aimed at unveiling the mechanisms underlying snow saltation at different saltation strengths and its coupling with the turbulent fluctuations of the wind. We conducted wind tunnel measurements of the momentum and mass-fluxes during snow saltation. For the mass-flux measurements we employed a shadowgraphy system which acquires images of the snow particle's shadows at high spatial and temporal resolution. The size and displacement of the particles are then determined by means of image analysis and Particle Tracking Velocimetry (PTV), allowing to estimate both snow mass-flux and flow velocity. Our controlled wind tunnel experiments revealed the existence of two regimes of saltation. In a turbulence-dependent regime occurring during weak saltation activity, we observed a strong coupling between snow transport and turbulent flow. Conversely during stronger saltation activity a turbulence-independent regime emerges, where the saltation develops its own length scale and it efficiently decouples from the wind fluctuations. We argue that different entrainment mechanisms could explain the existence of the two different saltation regimes as well as the observed high level of mass-flux intermittency.

A Unifying Mechanism for Cancer Cell Death through Ion Channel Activation by HAMLET

PubMed Central

Storm, Petter; Kjaer Klausen, Thomas; Trulsson, Maria; Ho CS, James; Dosnon, Marion; Westergren, Tomas; Chao, Yinxia; Rydström, Anna; Yang, Henry; Pedersen, Stine Falsig; Svanborg, Catharina

2013-01-01

Ion channels and ion fluxes control many aspects of tissue homeostasis. During oncogenic transformation, critical ion channel functions may be perturbed but conserved tumor specific ion fluxes remain to be defined. Here we used the tumoricidal protein-lipid complex HAMLET as a probe to identify ion fluxes involved in tumor cell death. We show that HAMLET activates a non-selective cation current, which reached a magnitude of 2.74±0.88 nA within 1.43±0.13 min from HAMLET application. Rapid ion fluxes were essential for HAMLET-induced carcinoma cell death as inhibitors (amiloride, BaCl2), preventing the changes in free cellular Na+ and K+ concentrations also prevented essential steps accompanying carcinoma cell death, including changes in morphology, uptake, global transcription, and MAP kinase activation. Through global transcriptional analysis and phosphorylation arrays, a strong ion flux dependent p38 MAPK response was detected and inhibition of p38 signaling delayed HAMLET-induced death. Healthy, differentiated cells were resistant to HAMLET challenge, which was accompanied by innate immunity rather than p38-activation. The results suggest, for the first time, a unifying mechanism for the initiation of HAMLET’s broad and rapid lethal effect on tumor cells. These findings are particularly significant in view of HAMLET’s documented therapeutic efficacy in human studies and animal models. The results also suggest that HAMLET offers a two-tiered therapeutic approach, killing cancer cells while stimulating an innate immune response in surrounding healthy tissues. PMID:23505537

A unifying mechanism for cancer cell death through ion channel activation by HAMLET.

PubMed

Storm, Petter; Klausen, Thomas Kjaer; Trulsson, Maria; Ho C S, James; Dosnon, Marion; Westergren, Tomas; Chao, Yinxia; Rydström, Anna; Yang, Henry; Pedersen, Stine Falsig; Svanborg, Catharina

2013-01-01

Ion channels and ion fluxes control many aspects of tissue homeostasis. During oncogenic transformation, critical ion channel functions may be perturbed but conserved tumor specific ion fluxes remain to be defined. Here we used the tumoricidal protein-lipid complex HAMLET as a probe to identify ion fluxes involved in tumor cell death. We show that HAMLET activates a non-selective cation current, which reached a magnitude of 2.74±0.88 nA within 1.43±0.13 min from HAMLET application. Rapid ion fluxes were essential for HAMLET-induced carcinoma cell death as inhibitors (amiloride, BaCl2), preventing the changes in free cellular Na(+) and K(+) concentrations also prevented essential steps accompanying carcinoma cell death, including changes in morphology, uptake, global transcription, and MAP kinase activation. Through global transcriptional analysis and phosphorylation arrays, a strong ion flux dependent p38 MAPK response was detected and inhibition of p38 signaling delayed HAMLET-induced death. Healthy, differentiated cells were resistant to HAMLET challenge, which was accompanied by innate immunity rather than p38-activation. The results suggest, for the first time, a unifying mechanism for the initiation of HAMLET's broad and rapid lethal effect on tumor cells. These findings are particularly significant in view of HAMLET's documented therapeutic efficacy in human studies and animal models. The results also suggest that HAMLET offers a two-tiered therapeutic approach, killing cancer cells while stimulating an innate immune response in surrounding healthy tissues.

Progress towards modeling tokamak boundary plasma turbulence and understanding its role in setting divertor heat flux widths

NASA Astrophysics Data System (ADS)

Chen, Bin

2017-10-01

QCMs (quasi-coherent modes) are well characterized in the edge of Alcator C-Mod, when operating in the Enhanced Dα (EDA) H-mode, a promising alternative regime for ELM (edge localized modes) suppressed operation. To improve the understanding of the physics behind the QCMs, three typical C-Mod EDA H-Mode discharges are simulated by BOUT + + using a six-field two-fluid model (based on the Braginskii equations). The simulated characteristics of the frequency versus wave number spectra of the modes is in reasonable agreement with phase contrast imaging data. The key simulation results are: 1) Linear spectrum analysis and the nonlinear phase relationship indicate the dominance of resistive-ballooning modes and drift-Alfven wave instabilities; 2) QCMs originate inside the separatrix; (3) magnetic flutter causes the mode spreading into the SOL; 4) the boundary electric field Er changes the turbulent characteristics of the QCMs and controls edge transport and the divertor heat flux width; 5) the magnitude of the divertor heat flux depends on the physics models, such as sources and sinks, sheath boundary conditions, and parallel heat flux limiting coefficient. The BOUT + + simulations have also been performed for inter-ELM periods of DIII-D and EAST discharges, and similar quasi-coherent modes have been found. The parallel electron heat fluxes projected onto the target from these BOUT + + simulations follow the experimental heat flux width scaling, in particular the inverse dependence of the width on the poloidal magnetic field with an outlier. Further turbulence statistics analysis shows that the blobs are generated near the pedestal peak gradient region inside the separatrix and contribute to the transport of the particle and heat in the SOL region. To understand the Goldston heuristic drift-based model, results will also be presented from self-consistent transport simulations with the electric and magnetic drifts in BOUT + + and with the sheath potential included in the SOL. Work supported by LLNL under Contract DE-AC52-07NA27344. This work was also supported by US DOE Grant DE-FC02-99ER54512, using Alcator C-Mod, a DOE Office of Science User Facility, and under the auspices of the CSC (No. 201506340019).

Metabolite profiling and associated gene expression reveal two metabolic shifts during the seed-to-seedling transition in Arabidopsis thaliana.

PubMed

Silva, Anderson Tadeu; Ligterink, Wilco; Hilhorst, Henk W M

2017-11-01

Metabolic and transcriptomic correlation analysis identified two distinctive profiles involved in the metabolic preparation for seed germination and seedling establishment, respectively. Transcripts were identified that may control metabolic fluxes. The transition from a quiescent metabolic state (dry seed) to the active state of a vigorous seedling is crucial in the plant's life cycle. We analysed this complex physiological trait by measuring the changes in primary metabolism that occur during the transition in order to determine which metabolic networks are operational. The transition involves several developmental stages from seed germination to seedling establishment, i.e. between imbibition of the mature dry seed and opening of the cotyledons, the final stage of seedling establishment. We hypothesized that the advancement of growth is associated with certain signature metabolite profiles. Metabolite-metabolite correlation analysis underlined two specific profiles which appear to be involved in the metabolic preparation for seed germination and efficient seedling establishment, respectively. Metabolite profiles were also compared to transcript profiles and although transcriptional changes did not always equate to a proportional metabolic response, in depth correlation analysis identified several transcripts that may directly influence the flux through metabolic pathways during the seed-to-seedling transition. This correlation analysis also pinpointed metabolic pathways which are significant for the seed-to-seedling transition, and metabolite contents that appeared to be controlled directly by transcript abundance. This global view of the transcriptional and metabolic changes during the seed-to-seedling transition in Arabidopsis opens up new perspectives for understanding the complex regulatory mechanism underlying this transition.

Consumption of methane by soils.

PubMed

Dueñas, C; Fernández, M C; Carretero, J; Pérez, M; Liger, E

1994-05-01

Measurements of the methane flux and methane concentration profiles in soil air are presented. The flux of methane from the soil is calculated by two methods: a) Direct by placing a static open chamber at the soil surface. b) Indirect, using the (222)Rn concentrations profile and the (222)Rn flux in the soil surface in parallel with the methane concentration ((222)Rn calibrated fluxes). The methane flux has been determined in two kinds of soils (sandy and loamy) in the surroundings of Málaga (SPAIN). The directly measured methane fluxes at all investigated sites is higher than methane fluxes derived from "Rn calibrated fluxes". Atmospheric methane is consumed by soils, mean direct flux to the atmosphere were - 0.33 g m(-2)yr-1. The direct methane flux is the same within the measuring error in sandy and loamy soils. The influence of the soil parameters on the methane flux indicates that microbial decomposition of methane is primarily controlled by the transport of methane.

Are There Different Populations of Flux Ropes in the Solar Wind?

NASA Astrophysics Data System (ADS)

Janvier, M.; Démoulin, P.; Dasso, S.

2014-07-01

Flux ropes are twisted magnetic structures that can be detected by in-situ measurements in the solar wind. However, different properties of detected flux ropes suggest different types of flux-rope populations. As such, are there different populations of flux ropes? The answer is positive and is the result of the analysis of four lists of flux ropes, including magnetic clouds (MCs), observed at 1 AU. The in-situ data for the four lists were fitted with the same cylindrical force-free field model, which provides an estimate of the local flux-rope parameters such as its radius and orientation. Since the flux-rope distributions have a broad dynamic range, we went beyond a simple histogram analysis by developing a partition technique that uniformly distributes the statistical fluctuations across the radius range. By doing so, we found that small flux ropes with radius R<0.1 AU have a steep power-law distribution in contrast to the larger flux ropes (identified as MCs), which have a Gaussian-like distribution. Next, from four CME catalogs, we estimated the expected flux-rope frequency per year at 1 AU. We found that the predicted numbers are similar to the frequencies of MCs observed in-situ. However, we also found that small flux ropes are at least ten times too abundant to correspond to CMEs, even to narrow ones. Investigating the different possible scenarios for the origin of these small flux ropes, we conclude that these twisted structures can be formed by blowout jets in the low corona or in coronal streamers.

Surface heat flux feedback controlled impurity seeding experiments with Alcator C-Mod’s high-Z vertical target plate divertor: performance, limitations and implications for fusion power reactors

NASA Astrophysics Data System (ADS)

Brunner, D.; Wolfe, S. M.; LaBombard, B.; Kuang, A. Q.; Lipschultz, B.; Reinke, M. L.; Hubbard, A.; Hughes, J.; Mumgaard, R. T.; Terry, J. L.; Umansky, M. V.; The Alcator C-Mod Team

2017-08-01

The Alcator C-Mod team has recently developed a feedback system to measure and control surface heat flux in real-time. The system uses real-time measurements of surface heat flux from surface thermocouples and a pulse-width modulated piezo valve to inject low-Z impurities (typically N2) into the private flux region. It has been used in C-Mod to mitigate peak surface heat fluxes  >40 MW m-2 down to  <10 MW m-2 while maintaining excellent core confinement, H 98  >  1. While the system works quite well under relatively steady conditions, use of it during transients has revealed important limitations on feedback control of impurity seeding in conventional vertical target plate divertors. In some cases, the system is unable to avoid plasma reattachment to the divertor plate or the formation of a confinement-damaging x-point MARFE. This is due to the small operational window for mitigated heat flux in the parameters of incident plasma heat flux, plasma density, and impurity density as well as the relatively slow response of the impurity gas injection system compared to plasma transients. Given the severe consequences for failure of such a system to operate reliably in a reactor, there is substantial risk that the conventional vertical target plate divertor will not provide an adequately controllable system in reactor-class devices. These considerations motivate the need to develop passively stable, highly compliant divertor configurations and experimental facilities that can test such possible solutions.

Eddy covariance carbonyl sulphide flux measurements with a quantum cascade laser absorption spectrometer

PubMed Central

Gerdel, Katharina; Spielmann, Felix Maximilian; Hammerle, Albin; Wohlfahrt, Georg

2017-01-01

The trace gas carbonyl sulphide (COS) has lately received growing interest in the eddy covariance (EC) community due to its potential to serve as an independent approach for constraining gross primary production and canopy stomatal conductance. Thanks to recent developments of fast-response high-precision trace gas analysers (e.g. quantum cascade laser absorption spectrometers (QCLAS)), a handful of EC COS flux measurements have been published since 2013. To date, however, a thorough methodological characterisation of QCLAS with regard to the requirements of the EC technique and the necessary processing steps has not been conducted. The objective of this study is to present a detailed characterization of the COS measurement with the Aerodyne QCLAS in the context of the EC technique, and to recommend best EC processing practices for those measurements. Data were collected from May to October 2015 at a temperate mountain grassland in Tyrol, Austria. Analysis of the Allan variance of high-frequency concentration measurements revealed sensor drift to occur under field conditions after an averaging time of around 50 s. We thus explored the use of two high-pass filtering approaches (linear detrending and recursive filtering) as opposed to block averaging and linear interpolation of regular background measurements for covariance computation. Experimental low-pass filtering correction factors were derived from a detailed cospectral analysis. The CO2 and H2O flux measurements obtained with the QCLAS were compared against those obtained with a closed-path infrared gas analyser. Overall, our results suggest small, but systematic differences between the various high-pass filtering scenarios with regard to the fraction of data retained in the quality control and flux magnitudes. When COS and CO2 fluxes are combined in the so-called ecosystem relative uptake rate, systematic differences between the high-pass filtering scenarios largely cancel out, suggesting that this relative metric represents a robust key parameter comparable between studies relying on different post-processing schemes. PMID:29093762

Eddy covariance carbonyl sulphide flux measurements with a quantum cascade laser absorption spectrometer.

PubMed

Gerdel, Katharina; Spielmann, Felix Maximilian; Hammerle, Albin; Wohlfahrt, Georg

2017-09-26

The trace gas carbonyl sulphide (COS) has lately received growing interest in the eddy covariance (EC) community due to its potential to serve as an independent approach for constraining gross primary production and canopy stomatal conductance. Thanks to recent developments of fast-response high-precision trace gas analysers (e.g. quantum cascade laser absorption spectrometers (QCLAS)), a handful of EC COS flux measurements have been published since 2013. To date, however, a thorough methodological characterisation of QCLAS with regard to the requirements of the EC technique and the necessary processing steps has not been conducted. The objective of this study is to present a detailed characterization of the COS measurement with the Aerodyne QCLAS in the context of the EC technique, and to recommend best EC processing practices for those measurements. Data were collected from May to October 2015 at a temperate mountain grassland in Tyrol, Austria. Analysis of the Allan variance of high-frequency concentration measurements revealed sensor drift to occur under field conditions after an averaging time of around 50 s. We thus explored the use of two high-pass filtering approaches (linear detrending and recursive filtering) as opposed to block averaging and linear interpolation of regular background measurements for covariance computation. Experimental low-pass filtering correction factors were derived from a detailed cospectral analysis. The CO 2 and H 2 O flux measurements obtained with the QCLAS were compared against those obtained with a closed-path infrared gas analyser. Overall, our results suggest small, but systematic differences between the various high-pass filtering scenarios with regard to the fraction of data retained in the quality control and flux magnitudes. When COS and CO 2 fluxes are combined in the so-called ecosystem relative uptake rate, systematic differences between the high-pass filtering scenarios largely cancel out, suggesting that this relative metric represents a robust key parameter comparable between studies relying on different post-processing schemes.

Influence of snow cover changes on surface radiation and heat balance based on the WRF model

NASA Astrophysics Data System (ADS)

Yu, Lingxue; Liu, Tingxiang; Bu, Kun; Yang, Jiuchun; Chang, Liping; Zhang, Shuwen

2017-10-01

The snow cover extent in mid-high latitude areas of the Northern Hemisphere has significantly declined corresponding to the global warming, especially since the 1970s. Snow-climate feedbacks play a critical role in regulating the global radiation balance and influencing surface heat flux exchange. However, the degree to which snow cover changes affect the radiation budget and energy balance on a regional scale and the difference between snow-climate and land use/cover change (LUCC)-climate feedbacks have been rarely studied. In this paper, we selected Heilongjiang Basin, where the snow cover has changed obviously, as our study area and used the WRF model to simulate the influences of snow cover changes on the surface radiation budget and heat balance. In the scenario simulation, the localized surface parameter data improved the accuracy by 10 % compared with the control group. The spatial and temporal analysis of the surface variables showed that the net surface radiation, sensible heat flux, Bowen ratio, temperature and percentage of snow cover were negatively correlated and that the ground heat flux and latent heat flux were positively correlated with the percentage of snow cover. The spatial analysis also showed that a significant relationship existed between the surface variables and land cover types, which was not obviously as that for snow cover changes. Finally, six typical study areas were selected to quantitatively analyse the influence of land cover types beneath the snow cover on heat absorption and transfer, which showed that when the land was snow covered, the conversion of forest to farmland can dramatically influence the net radiation and other surface variables, whereas the snow-free land showed significantly reduced influence. Furthermore, compared with typical land cover changes, e.g., the conversion of forest into farmland, the influence of snow cover changes on net radiation and sensible heat flux were 60 % higher than that of land cover changes, indicating the importance of snow cover changes in the surface-atmospheric feedback system.

Eddy covariance carbonyl sulfide flux measurements with a quantum cascade laser absorption spectrometer

NASA Astrophysics Data System (ADS)

Gerdel, Katharina; Spielmann, Felix Maximilian; Hammerle, Albin; Wohlfahrt, Georg

2017-09-01

The trace gas carbonyl sulfide (COS) has lately received growing interest from the eddy covariance (EC) community due to its potential to serve as an independent approach for constraining gross primary production and canopy stomatal conductance. Thanks to recent developments of fast-response high-precision trace gas analysers (e.g. quantum cascade laser absorption spectrometers, QCLAS), a handful of EC COS flux measurements have been published since 2013. To date, however, a thorough methodological characterisation of QCLAS with regard to the requirements of the EC technique and the necessary processing steps has not been conducted. The objective of this study is to present a detailed characterisation of the COS measurement with the Aerodyne QCLAS in the context of the EC technique and to recommend best EC processing practices for those measurements. Data were collected from May to October 2015 at a temperate mountain grassland in Tyrol, Austria. Analysis of the Allan variance of high-frequency concentration measurements revealed the occurrence of sensor drift under field conditions after an averaging time of around 50 s. We thus explored the use of two high-pass filtering approaches (linear detrending and recursive filtering) as opposed to block averaging and linear interpolation of regular background measurements for covariance computation. Experimental low-pass filtering correction factors were derived from a detailed cospectral analysis. The CO2 and H2O flux measurements obtained with the QCLAS were compared with those obtained with a closed-path infrared gas analyser. Overall, our results suggest small, but systematic differences between the various high-pass filtering scenarios with regard to the fraction of data retained in the quality control and flux magnitudes. When COS and CO2 fluxes are combined in the ecosystem relative uptake rate, systematic differences between the high-pass filtering scenarios largely cancel out, suggesting that this relative metric represents a robust key parameter comparable between studies relying on different post-processing schemes.

Forest disturbances trigger erosion controlled fluxes of nitrogen, phosphorus and dissolved carbon

Treesearch

Marek Matyjasik; Gretchen Moisen; Todd A. Schroeder; Tracy Frescino; Michael Hernandez

2015-01-01

The initial phase of the research that addressed correlation between annual forest disturbance maps produced from LANDSAT images and water quality and flow data indicate that forest disturbances in conjunction with intense atmospheric precipitation commonly trigger fluxes of several chemical constituents, such as nitrogen, phosphorus carbon. These fluxes appear to be...

Spatial and Temporal Dynamics of Carbon Fluxes in Glacial Meltwater Streams, Antarctica

NASA Astrophysics Data System (ADS)

Torrens, C.; Lyons, W. B.; McKnight, D. M.; Welch, K. A.; Gooseff, M. N.

2017-12-01

In the McMurdo Dry Valleys [MDV], Antarctica, glacial meltwater streams are the primary biogeochemical connectors linking glaciers, soils and lakes. These streams control the supply of nutrients and carbon to their terminal lakes, yet little is known about the magnitude, timing or distribution of these fluxes. The McMurdo Long Term Ecological Research project [MCM LTER] has collected over 20 years of sample data on dissolved organic and inorganic carbon in Taylor Valley streamwater; this is the first spatial and temporal analysis of this data. MDV streams are characterized by strong diel pulses in streamflow, specific electrical conductance, and temperature. Unlike temperate stream systems, there is no terrestrial vegetation, lateral overland flow or deep groundwater connection in MDV streams. As a result, the organic carbon is autochthonous, originating from stream microbial mats. Inorganic carbon is primarily bicarbonate; its source is hyporheic zone weathering. The carbonate system is in atmospheric equilibrium, reflecting the wide and shallow stream channels. Preliminary data show that the DOC flux varies with streamflow and is greater on the rising limb of the diel flow pulse. This pattern is more distinct in longer streams. DIC data does not show the same pattern, although the response may be blurred by a lag in hyporheic response to flood pulses and the lack of time-series data for alkalinity. Stream flood pulse dynamics control carbon loading to MDV lakes. As the climate changes, so will the timing and magnitude of diel flood pulses. This is likely to increase carbon loading to the Dry Valley lakes, altering the ecosystem carbon balance. This study increases our understanding of past and current patterns of carbon fluxes from streams to lakes; understanding past patterns will improve predictions of future changes.

Triiodothyronine increases myocardial function and pyruvate entry into the citric acid cycle after reperfusion in a model of infant cardiopulmonary bypass

PubMed Central

Olson, Aaron K.; Bouchard, Bertrand; Ning, Xue-Han; Isern, Nancy; Rosiers, Christine Des

2012-01-01

Triiodothyronine (T3) supplementation improves clinical outcomes in infants after cardiac surgery using cardiopulmonary bypass by unknown mechanisms. We utilized a translational model of infant cardiopulmonary bypass to test the hypothesis that T3 modulates pyruvate entry into the citric acid cycle (CAC), thereby providing the energy support for improved cardiac function after ischemia-reperfusion (I/R). Neonatal piglets received intracoronary [2-13Carbon(13C)]pyruvate for 40 min (8 mM) during control aerobic conditions (control) or immediately after reperfusion (I/R) from global hypothermic ischemia. A third group (I/R-Tr) received T3 (1.2 μg/kg) during reperfusion. We assessed absolute CAC intermediate levels and flux parameters into the CAC through oxidative pyruvate decarboxylation (PDC) and anaplerotic carboxylation (PC) using [2-13C]pyruvate and isotopomer analysis by gas and liquid chromatography-mass spectrometry and 13C-nuclear magnetic resonance spectroscopy. When compared with I/R, T3 (group I/R-Tr) increased cardiac power and oxygen consumption after I/R while elevating flux of both PDC and PC (∼4-fold). Although neither I/R nor I/R-Tr modified absolute CAC levels, T3 inhibited I/R-induced reductions in their molar percent enrichment. Furthermore, 13C-labeling of CAC intermediates suggests that T3 may decrease entry of unlabeled carbons at the level of oxaloacetate through anaplerosis or exchange reaction with asparate. T3 markedly enhances PC and PDC fluxes, thereby providing potential substrate for elevated cardiac function after reperfusion. This T3-induced increase in pyruvate fluxes occurs with preservation of the CAC intermediate pool. Our labeling data raise the possibility that T3 reduces reliance on amino acids for anaplerosis after reperfusion. PMID:22180654

Modeling pulsed soil respiration in an African savanna ecosystem

DOE Office of Scientific and Technical Information (OSTI.GOV)

Fan, Zhaosheng; Neff, Jason C.; Hanan, Niall P.

2015-01-01

Savannas cover 60% of the African continent and play an important role in the global carbon (C) emissions from fire and land use. To better characterize the biophysical controls over soil respiration in these settings, half-hourly observations of volumetric soil-water content, temperature, and the concentration of carbon dioxide (CO2) at different soil depths were continually measured from 2005 to 2007 under trees ("sub-canopy") and between trees ("inter-canopy") in a savanna vegetation near Skukuza, Kruger National Park, South Africa. The measured soil climate and CO2 concentration data were assimilated into a process-based model that estimates the CO2 production and flux withmore » coupled dynamics of dissolved organic C (DOC) and microbial biomass C. Our results show that temporal and spatial variations in CO2 flux were strongly influenced by precipitation and vegetation cover, with two times greater CO2 flux in the subcanopy plots (similar to 2421 g CO2 m(-2) yr(-1)) than in the inter-canopy plots (similar to 1290 g CO2 m(-2) yr(-1)). Precipitation influenced soil respiration by changing soil temperature and moisture; however, our modeling analysis suggests that the pulsed response of soil respiration to precipitation events (known as "Birch effect") is a key control on soil fluxes at this site. At this site, "Birch effect" contributed to approximately 50% and 65% of heterotrophic respiration or 20% and 39% of soil respiration in the sub-canopy and inter-canopy plots, respectively. These results suggest that pulsed response of respiration to precipitation events is an important component of the C cycle of savannas and should be considered in both measurement and modeling studies of carbon exchange in similar ecosystems. (C) 2014 Elsevier B.V. All rights reserved.« less

Evaluating the relationship between topography and groundwater using outputs from a continental-scale integrated hydrology model

NASA Astrophysics Data System (ADS)

Condon, Laura E.; Maxwell, Reed M.

2015-08-01

We study the influence of topography on groundwater fluxes and water table depths across the contiguous United States (CONUS). Groundwater tables are often conceptualized as subdued replicas of topography. While it is well known that groundwater configuration is also controlled by geology and climate, nonlinear interactions between these drivers within large real-world systems are not well understood and are difficult to characterize given sparse groundwater observations. We address this limitation using the fully integrated physical hydrology model ParFlow to directly simulate groundwater fluxes and water table depths within a complex heterogeneous domain that incorporates all three primary groundwater drivers. Analysis is based on a first of its kind, continental-scale, high-resolution (1 km), groundwater-surface water simulation spanning more than 6.3 million km2. Results show that groundwater fluxes are most strongly driven by topographic gradients (as opposed to gradients in pressure head) in humid regions with small topographic gradients or low conductivity. These regions are generally consistent with the topographically controlled groundwater regions identified in previous studies. However, we also show that areas where topographic slopes drive groundwater flux do not generally have strong correlations between water table depth and elevation. Nonlinear relationships between topography and water table depth are consistent with groundwater flow systems that are dominated by local convergence and could also be influenced by local variability in geology and climate. One of the strengths of the numerical modeling approach is its ability to evaluate continental-scale groundwater behavior at a high resolution not possible with other techniques. This article was corrected on 11 SEP 2015. See the end of the full text for details.

A microbial biogeochemistry network for soil carbon and nitrogen cycling and methane flux: model structure and application to Asia

NASA Astrophysics Data System (ADS)

Xu, X.; Song, C.; Wang, Y.; Ricciuto, D. M.; Lipson, D.; Shi, X.; Zona, D.; Song, X.; Yuan, F.; Oechel, W. C.; Thornton, P. E.

2017-12-01

A microbial model is introduced for simulating microbial mechanisms controlling soil carbon and nitrogen biogeochemical cycling and methane fluxes. The model is built within the CN (carbon-nitrogen) framework of Community Land Model 4.5, named as CLM-Microbe to emphasize its explicit representation of microbial mechanisms to biogeochemistry. Based on the CLM4.5, three new pools were added: bacteria, fungi, and dissolved organic matter. It has 11 pools and 34 transitional processes, compared with 8 pools and 9 transitional flow in the CLM4.5. The dissolve organic carbon was linked with a new microbial functional group based methane module to explicitly simulate methane production, oxidation, transport and their microbial controls. Comparing with CLM4.5-CN, the CLM-Microbe model has a number of new features, (1) microbial control on carbon and nitrogen flows between soil carbon/nitrogen pools; (2) an implicit representation of microbial community structure as bacteria and fungi; (3) a microbial functional-group based methane module. The model sensitivity analysis suggests the importance of microbial carbon allocation parameters on soil biogeochemistry and microbial controls on methane dynamics. Preliminary simulations validate the model's capability for simulating carbon and nitrogen dynamics and methane at a number of sites across the globe. The regional application to Asia has verified the model in simulating microbial mechanisms in controlling methane dynamics at multiple scales.

The impact of the diurnal cycle on the propagation of Madden-Julian Oscillation convection across the Maritime Continent

DOE PAGES

Hagos, Samson M.; Zhang, Chidong; Feng, Zhe; ...

2016-09-19

Influences of the diurnal cycle of convection on the propagation of the Madden-Julian Oscillation (MJO) across the Maritime Continent (MC) are examined using cloud-permitting regional model simulations and observations. A pair of ensembles of control (CONTROL) and no-diurnal cycle (NODC) simulations of the November 2011 MJO episode are performed. In the CONTROL simulations, the MJO signal is weakened as it propagates across the MC, with much of the convection stalling over the large islands of Sumatra and Borneo. In the NODC simulations, where the incoming shortwave radiation at the top of the atmosphere is maintained at its daily mean value,more » the MJO signal propagating across the MC is enhanced. Examination of the surface energy fluxes in the simulations indicates that in the presence of the diurnal cycle, surface downwelling shortwave radiation in CONTROL simulations is larger because clouds preferentially form in the afternoon. Furthermore, the diurnal co-variability of surface wind speed and skin temperature results in a larger sensible heat flux and a cooler land surface in CONTROL compared to NODC simulations. Here, an analysis of observations indicates that the modulation of the downwelling shortwave radiation at the surface by the diurnal cycle of cloudiness negatively projects on the MJO intraseasonal cycle and therefore disrupts the propagation of the MJO across the MC.« less

Second Law of Thermodynamics Applied to Metabolic Networks

NASA Technical Reports Server (NTRS)

Nigam, R.; Liang, S.

2003-01-01

We present a simple algorithm based on linear programming, that combines Kirchoff's flux and potential laws and applies them to metabolic networks to predict thermodynamically feasible reaction fluxes. These law's represent mass conservation and energy feasibility that are widely used in electrical circuit analysis. Formulating the Kirchoff's potential law around a reaction loop in terms of the null space of the stoichiometric matrix leads to a simple representation of the law of entropy that can be readily incorporated into the traditional flux balance analysis without resorting to non-linear optimization. Our technique is new as it can easily check the fluxes got by applying flux balance analysis for thermodynamic feasibility and modify them if they are infeasible so that they satisfy the law of entropy. We illustrate our method by applying it to the network dealing with the central metabolism of Escherichia coli. Due to its simplicity this algorithm will be useful in studying large scale complex metabolic networks in the cell of different organisms.

Neutrino emission from gamma-ray burst fireballs, revised.

PubMed

Hümmer, Svenja; Baerwald, Philipp; Winter, Walter

2012-06-08

We review the neutrino flux from gamma-ray bursts, which is estimated from gamma-ray observations and used for the interpretation of recent IceCube data, from a particle physics perspective. We numerically calculate the neutrino flux for the same astrophysical assumptions as the analytical fireball neutrino model, including the dominant pion and kaon production modes, flavor mixing, and magnetic field effects on the secondary muons, pions, and kaons. We demonstrate that taking into account the full energy dependencies of all spectra, the normalization of the expected neutrino flux reduces by about one order of magnitude and the spectrum shifts to higher energies, where we can pin down the exact origin of the discrepancies by the recomputation of the analytical models. We also reproduce the IceCube-40 analysis for exactly the same bursts and same assumptions and illustrate the impact of uncertainties. We conclude that the baryonic loading of the fireballs, which is an important control parameter for the emission of cosmic rays, can be constrained significantly with the full-scale experiment after about ten years.

The Predictability of Advection-dominated Flux-transport Solar Dynamo Models

NASA Astrophysics Data System (ADS)

Sanchez, Sabrina; Fournier, Alexandre; Aubert, Julien

2014-01-01

Space weather is a matter of practical importance in our modern society. Predictions of forecoming solar cycles mean amplitude and duration are currently being made based on flux-transport numerical models of the solar dynamo. Interested in the forecast horizon of such studies, we quantify the predictability window of a representative, advection-dominated, flux-transport dynamo model by investigating its sensitivity to initial conditions and control parameters through a perturbation analysis. We measure the rate associated with the exponential growth of an initial perturbation of the model trajectory, which yields a characteristic timescale known as the e-folding time τ e . The e-folding time is shown to decrease with the strength of the α-effect, and to increase with the magnitude of the imposed meridional circulation. Comparing the e-folding time with the solar cycle periodicity, we obtain an average estimate for τ e equal to 2.76 solar cycle durations. From a practical point of view, the perturbations analyzed in this work can be interpreted as uncertainties affecting either the observations or the physical model itself. After reviewing these, we discuss their implications for solar cycle prediction.

Experimental and Numerical Study on Effect of Sample Orientation on Auto-Ignition and Piloted Ignition of Poly(methyl methacrylate)

PubMed Central

Peng, Fei; Zhou, Xiao-Dong; Zhao, Kun; Wu, Zhi-Bo; Yang, Li-Zhong

2015-01-01

In this work, the effect of seven different sample orientations from 0° to 90° on pilot and non-pilot ignition of PMMA (poly(methyl methacrylate)) exposed to radiation has been studied with experimental and numerical methods. Some new and significant conclusions are drawn from the study, including a U-shape curve of ignition time and critical mass flux as sample angle increases for pilot ignition conditions. However, in auto-ignition, the ignition time and critical mass flux increases with sample angle α. Furthermore, a computational fluid dynamic model have been built based on the Fire Dynamics Simulator (FDS6) code to investigate the mechanisms controlling the dependence on sample orientation of the ignition of PMMA under external radiant heating. The results of theoretical analysis and modeling results indicate the decrease of total incident heat flux at sample surface plays the dominant role during the ignition processes of auto-ignition, but the volatiles gas flow has greater influence for piloted ignition conditions. PMID:28793421

Design of a transverse-flux permanent-magnet linear generator and controller for use with a free-piston stirling engine

NASA Astrophysics Data System (ADS)

Zheng, Jigui; Huang, Yuping; Wu, Hongxing; Zheng, Ping

2016-07-01

Transverse-flux with high efficiency has been applied in Stirling engine and permanent magnet synchronous linear generator system, however it is restricted for large application because of low and complex process. A novel type of cylindrical, non-overlapping, transverse-flux, and permanent-magnet linear motor(TFPLM) is investigated, furthermore, a high power factor and less process complexity structure research is developed. The impact of magnetic leakage factor on power factor is discussed, by using the Finite Element Analysis(FEA) model of stirling engine and TFPLM, an optimization method for electro-magnetic design of TFPLM is proposed based on magnetic leakage factor. The relation between power factor and structure parameter is investigated, and a structure parameter optimization method is proposed taking power factor maximum as a goal. At last, the test bench is founded, starting experimental and generating experimental are performed, and a good agreement of simulation and experimental is achieved. The power factor is improved and the process complexity is decreased. This research provides the instruction to design high-power factor permanent-magnet linear generator.

Neutron detection of the Triga Mark III reactor, using nuclear track methodology

DOE Office of Scientific and Technical Information (OSTI.GOV)

Espinosa, G., E-mail: espinosa@fisica.unam.mx; Golzarri, J. I.; Raya-Arredondo, R.

Nuclear Track Methodology (NTM), based on the neutron-proton interaction is one often employed alternative for neutron detection. In this paper we apply NTM to determine the Triga Mark III reactor operating power and neutron flux. The facility nuclear core, loaded with 85 Highly Enriched Uranium as fuel with control rods in a demineralized water pool, provide a neutron flux around 2 × 10{sup 12} n cm{sup −2} s{sup −1}, at the irradiation channel TO-2. The neutron field is measured at this channel, using Landauer{sup ®} PADC as neutron detection material, covered by 3 mm Plexiglas{sup ®} as converter. After exposure, plasticmore » detectors were chemically etched to make observable the formed latent tracks induced by proton recoils. The track density was determined by a custom made Digital Image Analysis System. The resulting average nuclear track density shows a direct proportionality response for reactor power in the range 0.1-7 kW. We indicate several advantages of the technique including the possibility to calibrate the neutron flux density measured at low reactor power.« less

Comparison of satellite-derived dynamical quantities for the stratosphere of the Southern Hemisphere

NASA Technical Reports Server (NTRS)

Miles, Thomas (Editor); Oneill, Alan (Editor)

1989-01-01

As part of the international Middle Atmosphere Program (MAP), a project was instituted to study the dynamics of the Middle Atmosphere in the Southern Hemisphere (MASH). A pre-MASH workshop was held with two aims: comparison of Southern Hemisphere dynamical quantities derived from various archives of satellite data; and assessing the impact of different base-level height information on such derived quantities. The dynamical quantities examined included geopotential height, zonal wind, potential vorticity, eddy heat and momentum fluxes, and Eliassen-Palm fluxes. It was found that while there was usually qualitative agreement between the different sets of fields, substantial quantitative differences were evident, particularly in high latitudes. The fidelity of the base-level analysis was found to be of prime importance in calculating derived quantities - especially the Eliassen-Palm flux divergence and potential vorticity. Improvements in base-level analyses are recommended. In particular, quality controls should be introduced to remove spurious localized features from analyses, and information from all Antarctic radiosondes should be utilized where possible. Caution in drawing quantitative inferences from satellite data for the middle atmosphere of the Southern Hemisphere is advised.

Phenological Versus Meteorological Controls on Land-atmosphere Water and Carbon Fluxes

NASA Technical Reports Server (NTRS)

Puma, Michael J.; Koster, Randal D.; Cook, Benjamin I.

2013-01-01

Phenological dynamics and their related processes strongly constrain land-atmosphere interactions, but their relative importance vis-à-vis meteorological forcing within general circulation models (GCMs) is still uncertain. Using an off-line land surface model, we evaluate leaf area and meteorological controls on gross primary productivity, evapotranspiration, transpiration, and runoff at four North American sites, representing different vegetation types and background climates. Our results demonstrate that compared to meteorological controls, variation in leaf area has a dominant control on gross primary productivity, a comparable but smaller influence on transpiration, a weak influence on total evapotranspiration, and a negligible impact on runoff. Climate regime and characteristic variations in leaf area have important modulating effects on these relative controls, which vary depending on the fluxes and timescales of interest. We find that leaf area in energylimited evaporative regimes tends to exhibit greater control on annual gross primary productivity than in moisture-limited regimes, except when vegetation exhibits little interannual variation in leaf area. For transpiration, leaf area control is somewhat less in energylimited regimes and greater in moisture-limited regimes for maximum pentad and annual fluxes. These modulating effects of climate and leaf area were less clear for other fluxes and at other timescales. Our findings are relevant to land-atmosphere coupling in GCMs, especially considering that leaf area variations are a fundamental element of land use and land cover change simulations.

Vadose zone controls on damping of climate-induced transient recharge fluxes in U.S. agroecosystems

NASA Astrophysics Data System (ADS)

Gurdak, Jason

2017-04-01

Understanding the physical processes in the vadose zone that link climate variability with transient recharge fluxes has particular relevance for the sustainability of groundwater-supported irrigated agriculture and other groundwater-dependent ecosystems. Natural climate variability on interannual to multidecadal timescales has well-documented influence on precipitation, evapotranspiration, soil moisture, infiltration flux, and can augment or diminish human stresses on water resources. Here the behavior and damping depth of climate-induced transient water flux in the vadose zone is explored. The damping depth is the depth in the vadose zone that the flux variation damps to 5% of the land surface variation. Steady-state recharge occurs when the damping depth is above the water table, and transient recharge occurs when the damping depth is below the water table. Findings are presented from major agroecosystems of the United States (U.S.), including the High Plains, Central Valley, California Coastal Basin, and Mississippi Embayment aquifer systems. Singular spectrum analysis (SSA) is used to identify quasi-periodic signals in precipitation and groundwater time series that are coincident with the Arctic Oscillation (AO) (6-12 mo cycle), Pacific/North American oscillation (PNA) (<1-4 yr cycle), El Niño/Southern Oscillation (ENSO) (2-7 yr cycle), North Atlantic Oscillation (NAO) (3-6 yr cycle), Pacific Decadal Oscillation (PDO) (15-30 yr cycle), and Atlantic Multidecadal Oscillation (AMO) (50-70 yr cycle). SSA results indicate that nearly all of the quasi-periodic signals in the precipitation and groundwater levels have a statistically significant lag correlation (95% confidence interval) with the AO, PNA, ENSO, NAO, PDO, and AMO indices. Results from HYDRUS-1D simulations indicate that transient water flux through the vadose zone are controlled by highly nonlinear interactions between mean infiltration flux and infiltration period related to the modes of climate variability and the local soil textures, layering, and depth to the water table. Simulation results for homogeneous profiles generally show that shorter-period climate oscillations, smaller mean fluxes, and finer-grained soil textures generally produce damping depths closer to land surface. Simulation results for layered soil textures indicate more complex responses in the damping depth, including the finding that finer-textured layers in a coarser soil profile generally result in damping depths closer to land surface, while coarser-textured layers in coarser soil profile result in damping depths deeper in the vadose zone. Findings from this study improve understanding of how vadose zone properties influences transient recharge flux and damp climate variability signals in groundwater systems, and have important implications for sustainable management of groundwater resources and coupled agroecosystems under future climate variability and change.

A vadose zone water fluxmeter with divergence control

NASA Astrophysics Data System (ADS)

Gee, G. W.; Ward, A. L.; Caldwell, T. G.; Ritter, J. C.

2002-08-01

Unsaturated water flux densities are needed to quantify water and contaminant transfer within the vadose zone. However, water flux densities are seldom measured directly and often are predicted with uncertainties of an order or magnitude or more. A water fluxmeter was designed, constructed, and tested to directly measure drainage fluxes in field soils. The fluxmeter was designed to minimize divergence. It concentrates flow into a narrow sensing region filled with a fiberglass wick. The wick applies suction, proportional to its length, and passively drains the meter. The meter can be installed in an augured borehole at almost any depth below the root zone. Water flux through the meter is measured with a self-calibrating tipping bucket, with a sensitivity of ~4 mL tip-1. For our meter this is equivalent to detection limit of ~0.1 mm. Passive-wick devices previously have not properly corrected for flow divergence. Laboratory measurements supported predictions of a two-dimensional (2-D) numerical model, which showed that control of the collector height H and knowledge of soil hydraulic properties are required for improving divergence control, particularly at fluxes below 1000 mm yr-1. The water fluxmeter is simple in concept, is inexpensive, and has the capability of providing continuous and reliable monitoring of unsaturated water fluxes ranging from less than 1 mm yr-1 to more than 1000 mm yr-1.

A vadose zone water fluxmeter with divergence control

USGS Publications Warehouse

Gee, G.W.; Ward, A.L.; Caldwell, T.G.; Ritter, J.C.

2002-01-01

Unsaturated water flux densities are needed to quantify water and contaminant transfer within the vadose zone. However, water flux densities are seldom measured directly and often are predicted with uncertainties of an order or magnitude or more. A water fluxmeter was designed, constructed, and tested to directly measure drainage fluxes in field soils. The fluxmeter was designed to minimize divergence. It concentrates flow into a narrow sensing region filled with a fiberglass wick. The wick applies suction, proportional to its length, and passively drains the meter. The meter can be installed in an augured borehole at almost any depth below the root zone. Water flux through the meter is measured with a self‐calibrating tipping bucket, with a sensitivity of ∼4 mL tip−1. For our meter this is equivalent to detection limit of ∼0.1 mm. Passive‐wick devices previously have not properly corrected for flow divergence. Laboratory measurements supported predictions of a two‐dimensional (2‐D) numerical model, which showed that control of the collector height H and knowledge of soil hydraulic properties are required for improving divergence control, particularly at fluxes below 1000 mm yr−1. The water fluxmeter is simple in concept, is inexpensive, and has the capability of providing continuous and reliable monitoring of unsaturated water fluxes ranging from less than 1 mm yr−1 to more than 1000 mm yr−1.

Emotional Learning Based Intelligent Controllers for Rotor Flux Oriented Control of Induction Motor

NASA Astrophysics Data System (ADS)

Abdollahi, Rohollah; Farhangi, Reza; Yarahmadi, Ali

2014-08-01

This paper presents design and evaluation of a novel approach based on emotional learning to improve the speed control system of rotor flux oriented control of induction motor. The controller includes a neuro-fuzzy system with speed error and its derivative as inputs. A fuzzy critic evaluates the present situation, and provides the emotional signal (stress). The controller modifies its characteristics so that the critics stress is reduced. The comparative simulation results show that the proposed controller is more robust and hence found to be a suitable replacement of the conventional PI controller for the high performance industrial drive applications.

Small spatial variability in methane emission measured from a wet patterned boreal bog

NASA Astrophysics Data System (ADS)

Korrensalo, Aino; Männistö, Elisa; Alekseychik, Pavel; Mammarella, Ivan; Rinne, Janne; Vesala, Timo; Tuittila, Eeva-Stiina

2018-03-01

We measured methane fluxes of a patterned bog situated in Siikaneva in southern Finland from six different plant community types in three growing seasons (2012-2014) using the static chamber method with chamber exposure of 35 min. A mixed-effects model was applied to quantify the effect of the controlling factors on the methane flux. The plant community types differed from each other in their water level, species composition, total leaf area (LAITOT) and leaf area of aerenchymatous plant species (LAIAER). Methane emissions ranged from -309 to 1254 mg m-2 d-1. Although methane fluxes increased with increasing peat temperature, LAITOT and LAIAER, they had no correlation with water table or with plant community type. The only exception was higher fluxes from hummocks and high lawns than from high hummocks and bare peat surfaces in 2013 and from bare peat surfaces than from high hummocks in 2014. Chamber fluxes upscaled to ecosystem level for the peak season were of the same magnitude as the fluxes measured with the eddy covariance (EC) technique. In 2012 and in August 2014 there was a good agreement between the two methods; in 2013 and in July 2014, the chamber fluxes were higher than the EC fluxes. Net fluxes to soil, indicating higher methane oxidation than production, were detected every year and in all community types. Our results underline the importance of both LAIAER and LAITOT in controlling methane fluxes and indicate the need for automatized chambers to reliably capture localized events to support the more robust EC method.

Understanding Regulation of Metabolism through Feasibility Analysis

PubMed Central

Nikerel, Emrah; Berkhout, Jan; Hu, Fengyuan; Teusink, Bas; Reinders, Marcel J. T.; de Ridder, Dick

2012-01-01

Understanding cellular regulation of metabolism is a major challenge in systems biology. Thus far, the main assumption was that enzyme levels are key regulators in metabolic networks. However, regulation analysis recently showed that metabolism is rarely controlled via enzyme levels only, but through non-obvious combinations of hierarchical (gene and enzyme levels) and metabolic regulation (mass action and allosteric interaction). Quantitative analyses relating changes in metabolic fluxes to changes in transcript or protein levels have revealed a remarkable lack of understanding of the regulation of these networks. We study metabolic regulation via feasibility analysis (FA). Inspired by the constraint-based approach of Flux Balance Analysis, FA incorporates a model describing kinetic interactions between molecules. We enlarge the portfolio of objectives for the cell by defining three main physiologically relevant objectives for the cell: function, robustness and temporal responsiveness. We postulate that the cell assumes one or a combination of these objectives and search for enzyme levels necessary to achieve this. We call the subspace of feasible enzyme levels the feasible enzyme space. Once this space is constructed, we can study how different objectives may (if possible) be combined, or evaluate the conditions at which the cells are faced with a trade-off among those. We apply FA to the experimental scenario of long-term carbon limited chemostat cultivation of yeast cells, studying how metabolism evolves optimally. Cells employ a mixed strategy composed of increasing enzyme levels for glucose uptake and hexokinase and decreasing levels of the remaining enzymes. This trade-off renders the cells specialized in this low-carbon flux state to compete for the available glucose and get rid of over-overcapacity. Overall, we show that FA is a powerful tool for systems biologists to study regulation of metabolism, interpret experimental data and evaluate hypotheses. PMID:22808034

Effects of land use on the timing and magnitude of dissolved organic carbon and nitrate fluxes: a regional analysis of high-frequency sensor measurements from forested, agricultural, and urban watersheds

NASA Astrophysics Data System (ADS)

Seybold, E. C.; Gold, A.; Inamdar, S. P.; Pradhanang, S. M.; Bowden, W. B.; Vaughan, M.; Addy, K.; Shanley, J. B.; Andrew, V.; Sleeper, R.; Levia, D. F., Jr.; Adair, C.; Wemple, B. C.; Schroth, A. W.

2017-12-01

Land use/land cover change has been shown to have significant impacts on nutrient loading to aquatic systems, and has been linked to coastal zone hypoxia and eutrophication of lake ecosystems. While it is clear that changes in land use/land cover are associated with changes in aquatic ecosystem function, a mechanistic understanding of how nutrient fluxes from distinct land cover classes respond to hydrologic events on event and seasonal scales remains unknown. Recent advances in the availability of high-frequency water quality sensors provide an opportunity to assess these relationships at a high temporal resolution. We deployed a network of in-situ spectrophotometers in watersheds with predominantly forested, agricultural, and urban land uses that spanned a latitudinal gradient in the northeastern US from Vermont to Delaware. Our study sought to assess how land cover affected the timing and magnitude of fluxes of carbon (C) and nitrogen (N) from watersheds with distinct land uses, and to determine whether these relationships varied regionally. We found systematic differences in the timing and magnitude of C and N fluxes and strong variation in the annual mass fluxes from these distinct land cover classes. In particular, we found that while the phenology of C and N fluxes varied across land uses, there were distinct regional similarities in the C and N flux regimes within a given land use class. We also found strong inter-annual variability in carbon and nitrogen fluxes in response to inter-annual variability in precipitation and discharge, suggesting a high degree of hydrologic control over nutrient loading. These findings also emphasize the potential for climate change, and in particular precipitation variability, to drive strong variation in the magnitude of downstream nutrient flux to receiving lakes and estuaries. Our study emphasizes the pervasive influence of land cover and its effects on water quality, and also highlights the strong signature of anthropogenic land use choices on regional C and N cycling.

Analysis of Surface Fluxes at Eureka Climate Observatory in Arctic

NASA Astrophysics Data System (ADS)

Grachev, Andrey; Albee, Robert; Fairall, Christopher; Hare, Jeffrey; Persson, Ola; Uttal, Taneil

2010-05-01

The Arctic region is experiencing unprecedented changes associated with increasing average temperatures (faster than the pace of the globally-averaged increase) and significant decreases in both the areal extent and thickness of the Arctic pack ice. These changes are early warning signs of shifts in the global climate system that justifies increased scientific focus on this region. The increase in atmospheric carbon dioxide has raised concerns worldwide about future climate change. Recent studies suggest that huge stores of carbon dioxide (and other climate relevant compounds) locked up in Arctic soils could be unexpectedly released due to global warming. Observational evidence suggests that atmospheric energy fluxes are a major contributor to the decrease of the Arctic pack ice, seasonal land snow cover and the warming of the surrounding land areas and permafrost layers. To better understand the atmosphere-surface exchange mechanisms, improve models, and to diagnose climate variability in the Arctic, accurate measurements are required of all components of the net surface energy budget and the carbon dioxide cycle over representative areas and over multiple years. In this study we analyze variability of turbulent fluxes including water vapor and carbon dioxide transfer based on long-term measurements made at Eureka observatory (80.0 N, 85.9 W) located near the coast of the Arctic Ocean (Canadian territory of Nunavut). Turbulent fluxes and mean meteorological data are continuously measured and reported hourly at various levels on a 10-m flux tower. Sonic anemometers are located at 3 and 8 m heights while high-speed Licor 7500 infrared gas analyzer (water moisture and carbon dioxide measurements) at 7.5 m height. According to our data, that the sensible heat flux, carbon dioxide and water vapor fluxes exhibited clear diurnal cycles in Arctic summer. This behavior is similar to the diurnal variation of the fluxes in mid-latitudes during the plants growing season, with carbon dioxide uptake from the atmosphere during the day due to photosynthesis, and carbon dioxide loss to the atmosphere due to vegetation respiration during the night. However, at Eureka vegetation was a source of carbon dioxide during sunlit periods. Thus the sign of carbon dioxide flux was controlled by air temperature even during Arctic summer.

Development of high flux thermal neutron generator for neutron activation analysis

NASA Astrophysics Data System (ADS)

Vainionpaa, Jaakko H.; Chen, Allan X.; Piestrup, Melvin A.; Gary, Charles K.; Jones, Glenn; Pantell, Richard H.

2015-05-01

The new model DD110MB neutron generator from Adelphi Technology produces thermal (<0.5 eV) neutron flux that is normally achieved in a nuclear reactor or larger accelerator based systems. Thermal neutron fluxes of 3-5 · 107 n/cm2/s are measured. This flux is achieved using four ion beams arranged concentrically around a target chamber containing a compact moderator with a central sample cylinder. Fast neutron yield of ∼2 · 1010 n/s is created at the titanium surface of the target chamber. The thickness and material of the moderator is selected to maximize the thermal neutron flux at the center. The 2.5 MeV neutrons are quickly thermalized to energies below 0.5 eV and concentrated at the sample cylinder. The maximum flux of thermal neutrons at the target is achieved when approximately half of the neutrons at the sample area are thermalized. In this paper we present simulation results used to characterize performance of the neutron generator. The neutron flux can be used for neutron activation analysis (NAA) prompt gamma neutron activation analysis (PGNAA) for determining the concentrations of elements in many materials. Another envisioned use of the generator is production of radioactive isotopes. DD110MB is small enough for modest-sized laboratories and universities. Compared to nuclear reactors the DD110MB produces comparable thermal flux but provides reduced administrative and safety requirements and it can be run in pulsed mode, which is beneficial in many neutron activation techniques.

Flux coupling and transcriptional regulation within the metabolic network of the photosynthetic bacterium Synechocystis sp. PCC6803.

PubMed

Montagud, Arnau; Zelezniak, Aleksej; Navarro, Emilio; de Córdoba, Pedro Fernández; Urchueguía, Javier F; Patil, Kiran Raosaheb

2011-03-01

Synechocystis sp. PCC6803 is a model cyanobacterium capable of producing biofuels with CO(2) as carbon source and with its metabolism fueled by light, for which it stands as a potential production platform of socio-economic importance. Compilation and characterization of Synechocystis genome-scale metabolic model is a pre-requisite toward achieving a proficient photosynthetic cell factory. To this end, we report iSyn811, an upgraded genome-scale metabolic model of Synechocystis sp. PCC6803 consisting of 956 reactions and accounting for 811 genes. To gain insights into the interplay between flux activities and metabolic physiology, flux coupling analysis was performed for iSyn811 under four different growth conditions, viz., autotrophy, mixotrophy, heterotrophy, and light-activated heterotrophy (LH). Initial steps of carbon acquisition and catabolism formed the versatile center of the flux coupling networks, surrounded by a stable core of pathways leading to biomass building blocks. This analysis identified potential bottlenecks for hydrogen and ethanol production. Integration of transcriptomic data with the Synechocystis flux coupling networks lead to identification of reporter flux coupling pairs and reporter flux coupling groups - regulatory hot spots during metabolic shifts triggered by the availability of light. Overall, flux coupling analysis provided insight into the structural organization of Synechocystis sp. PCC6803 metabolic network toward designing of a photosynthesis-based production platform. Copyright © 2011 WILEY-VCH Verlag GmbH & Co. KGaA, Weinheim.

A Method to Constrain Genome-Scale Models with 13C Labeling Data

PubMed Central

García Martín, Héctor; Kumar, Vinay Satish; Weaver, Daniel; Ghosh, Amit; Chubukov, Victor; Mukhopadhyay, Aindrila; Arkin, Adam; Keasling, Jay D.

2015-01-01

Current limitations in quantitatively predicting biological behavior hinder our efforts to engineer biological systems to produce biofuels and other desired chemicals. Here, we present a new method for calculating metabolic fluxes, key targets in metabolic engineering, that incorporates data from 13C labeling experiments and genome-scale models. The data from 13C labeling experiments provide strong flux constraints that eliminate the need to assume an evolutionary optimization principle such as the growth rate optimization assumption used in Flux Balance Analysis (FBA). This effective constraining is achieved by making the simple but biologically relevant assumption that flux flows from core to peripheral metabolism and does not flow back. The new method is significantly more robust than FBA with respect to errors in genome-scale model reconstruction. Furthermore, it can provide a comprehensive picture of metabolite balancing and predictions for unmeasured extracellular fluxes as constrained by 13C labeling data. A comparison shows that the results of this new method are similar to those found through 13C Metabolic Flux Analysis (13C MFA) for central carbon metabolism but, additionally, it provides flux estimates for peripheral metabolism. The extra validation gained by matching 48 relative labeling measurements is used to identify where and why several existing COnstraint Based Reconstruction and Analysis (COBRA) flux prediction algorithms fail. We demonstrate how to use this knowledge to refine these methods and improve their predictive capabilities. This method provides a reliable base upon which to improve the design of biological systems. PMID:26379153

Experimental investigation of piston heat transfer under conventional diesel and reactivity-controlled compression ignition combustion regimes

DOE Office of Scientific and Technical Information (OSTI.GOV)

Splitter, Derek A; Hendricks, Terry Lee; Ghandhi, Jaal B

2014-01-01

The piston of a heavy-duty single-cylinder research engine was instrumented with 11 fast-response surface thermocouples, and a commercial wireless telemetry system was used to transmit the signals from the moving piston. The raw thermocouple data were processed using an inverse heat conduction method that included Tikhonov regularization to recover transient heat flux. By applying symmetry, the data were compiled to provide time-resolved spatial maps of the piston heat flux and surface temperature. A detailed comparison was made between conventional diesel combustion and reactivity-controlled compression ignition combustion operations at matched conditions of load, speed, boost pressure, and combustion phasing. The integratedmore » piston heat transfer was found to be 24% lower, and the mean surface temperature was 25 C lower for reactivity-controlled compression ignition operation as compared to conventional diesel combustion, in spite of the higher peak heat release rate. Lower integrated piston heat transfer for reactivity-controlled compression ignition was found over all the operating conditions tested. The results showed that increasing speed decreased the integrated heat transfer for conventional diesel combustion and reactivity-controlled compression ignition. The effect of the start of injection timing was found to strongly influence conventional diesel combustion heat flux, but had a negligible effect on reactivity-controlled compression ignition heat flux, even in the limit of near top dead center high-reactivity fuel injection timings. These results suggest that the role of the high-reactivity fuel injection does not significantly affect the thermal environment even though it is important for controlling the ignition timing and heat release rate shape. The integrated heat transfer and the dynamic surface heat flux were found to be insensitive to changes in boost pressure for both conventional diesel combustion and reactivity-controlled compression ignition. However, for reactivity-controlled compression ignition, the mean surface temperature increased with changes in boost suggesting that equivalence ratio affects steady-state heat transfer.« less

Results from EuCliD (European Clinical Dialysis Database): impact of shifting treatment modality.

PubMed

Merello Godino, J I; Rentero, R; Orlandini, G; Marcelli, D; Ronco, C

2002-11-01

The use of biocompatible high-flux membranes is more efficient than low-flux membranes in controlling a number of hemodialysis-related diseases. The aim of this cooperative study was to evaluate the 6-month effect of a switch from low- to high-flux dialysers on patients treated in 39 Spanish dialysis centres. The clinical data used in this analysis were prospectively collected by the EuCliD database, developed to monitor the quality of treatment delivered in a large network of European Dialysis Centres. Inclusion criteria for the study were the condition of end-stage renal disease (ESRD) on chronic hemodialysis and low-flux dialysis for at least six months before the switch to high-flux dialysis. Of 1,543 patients enrolled in the study between 2000 and 2001, 1,046 patients were considered for the analysis. 497 patients were excluded because they did not complete the follow-up. Outcome measures were the reduction of pre-dialysis beta-2 microglobulin, the improvement of anemia or reduction in rHu-EPO dose required to maintain best correction of anemia, reduction of inflammatory parameters (CRP), improvement in lipid profile (Total and HDL cholesterol, tryglycerides), maintenance of nutritional status. Albumin and "dry" (post-hemodialysis) body weight were both evaluated as nutritional indexes. During the six months of high-flux hemodialysis, there was a significant increase in hemoglobin (from 11.55 +/- 1.41 to 11.88 +/- 1.43 g/L; p < 0.001). Considering the temporarily untreated patients on a 0 U/week dose, erythropoietin remained stable (from 5,670 +/- 4,199 to 5,657 +/- 4,411 U/week). During the second part of the follow-up, the lipid profile significantly improved (Fig. 3). Total cholesterol and triglycerides decreased significantly (p < 0.001), while HDL cholesterol increased (p = 0.006). Calculated levels of LDL cholesterol also significantly decreased (p = 0.001). Dry body weight remained stable (64.7 +/- 11.9 vs. 64.7 +/- 12.0 kg) as well as in albumin levels (3.93 +/- 0.43 vs. 3.94 +/- 0.43 g/dL) between the two modalities of treatment. The level of beta2-microglobulin significantly decreased during high-flux dialysis (33.5 +/- 14.4 vs. 26.3 +/- 8.6 mg/dL, p < 0.001). All above mentioned results may have as a common denominator an improved blood purification from uremic toxins and a reduced level of chronic sub-clinical inflammation. All together, these results seem to confirm the superiority of high-flux dialysis in terms of clinical and physiological outcomes.

DOE Office of Scientific and Technical Information (OSTI.GOV)

Danilo Dragoni; Hans Peter Schmid; C.S.B. Grimmond

During the project period we continued to conduct long-term (multi-year) measurements, analysis, and modeling of energy and mass exchange in and over a deciduous forest in the Midwestern United States, to enhance the understanding of soil-vegetation-atmosphere exchange of carbon. At the time when this report was prepared, results from nine years of measurements (1998 - 2006) of above canopy CO2 and energy fluxes at the AmeriFlux site in the Morgan-Monroe State Forest, Indiana, USA (see Table 1), were available on the Fluxnet database, and the hourly CO2 fluxes for 2007 are presented here (see Figure 1). The annual sequestration ofmore » atmospheric carbon by the forest is determined to be between 240 and 420 g C m-2 a-1 for the first ten years. These estimates are based on eddy covariance measurements above the forest, with a gap-filling scheme based on soil temperature and photosynthetically active radiation. Data gaps result from missing data or measurements that were rejected in qua)lity control (e.g., during calm nights). Complementary measurements of ecological variables (i.e. inventory method), provided an alternative method to quantify net carbon uptake by the forest, partition carbon allocation in each ecosystem components, and reduce uncertainty on annual net ecosystem productivity (NEP). Biometric datasets are available on the Fluxnext database since 1998 (with the exclusion of 2006). Analysis for year 2007 is under completion.« less

Thermotronics: Towards Nanocircuits to Manage Radiative Heat Flux

NASA Astrophysics Data System (ADS)

Ben-Abdallah, Philippe; Biehs, Svend-Age

2017-02-01

The control of electric currents in solids is at the origin of the modern electronics revolution that has driven our daily life since the second half of 20th century. Surprisingly, to date, there is no thermal analogue for a control of heat flux. Here, we summarise the very last developments carried out in this direction to control heat exchanges by radiation both in near and far-field in complex architecture networks.

Simulating Spatial Variability of Fluvial Sediment Fluxes Within the Magdalena Drainage Basin, Colombia.

NASA Astrophysics Data System (ADS)

Kettner, A. J.; Syvitski, J. P.; Restrepo, J. D.

2008-12-01

This study explores the application of an empirical sediment flux model BQART, to simulate long-term sediment fluxes of major tributaries of a river system based on a limited number of input parameters. We validate model results against data of the 1612 km long Magdalena River, Colombia, South America, which is well monitored. The Magdalena River, draining a hinterland area of 257,438 km2, of which the majority lies in the Andes before reaching the Atlantic coast, is known for its high sediment yield, 560 t kg- 2 yr-1; higher than nearby South American rivers like the Amazon or the Orinoco River. Sediment fluxes of 32 tributary basins of the Magdalena River were simulated based on the following controlling factors: geomorphic influences (tributary-basin area and relief) derived from high-resolution Shuttle Radar Topography Mission data, tributary basin-integrated lithology based on GIS analysis of lithology data, 30year temperature data, and observed monthly mean discharge data records (varying in record length of 15 to 60 years). Preliminary results indicate that the simulated sediment flux of all 32 tributaries matches the observational record, given the observational error and the annual variability. These simulations did not take human influences into account yet, which often increases sediment fluxes by accelerating erosion, especially in steep mountainous area similar to the Magdalena. Simulations indicate that, with relatively few input parameters, mostly derived from remotely-sensed data or existing compiled GIS datasets, it is possible to predict: which tributaries in an arbitrary river drainage produce relatively high contributions to sediment yields, and where in the drainage basin you might expect conveyance loss.

7Be, 210Pb and 40K depositions over 11 years in Málaga.

PubMed

Dueñas, C; Gordo, E; Liger, E; Cabello, M; Cañete, S; Pérez, M; Torre-Luque, P de la

2017-11-01

The monthly bulk depositional fluxes of three natural radionuclides ( 7 Be, 210 Pb and 40 K) were measured at a Mediterranean coastal station (Málaga) over an 11-year period from 2005 to 2015. The mean annual depositional fluxes of 7 Be, 210 Pb and 40 K were 1215, 144 and 67 Bq m -2 year -1 respectively, showing a clear seasonal trend with minimum values recorded during summer and maximum values in winter. The rainfall regime with dry summers allows estimating the dry deposition. Assuming constant dry deposition through each year, 7 Be, 210 Pb and 40 K would account for 12.5, 26.5 and 33% of the bulk fallout respectively which indicates that deposition for 210 Pb and 40 K are significantly higher than 7 Be. The precipitation-normalized enrichment factor alpha used to explain seasonal variations in the depositional fluxes of radionuclides with respect the rainfall, indicates higher depositional fluxes during spring and summer than expected from the amount of rainfall. Despite their different origin, 210 Pb and 7 Be monthly depositional fluxes have strong correlation. The atmospheric deposition fluxes of 7 Be, 210 Pb and 40 K were controlled mainly by the amount of rainfall (r = 0.89, 0.91 and 0.66 respectively). Moreover, principal component analysis was applied to the datasets and deposition of radionuclides and rainfall in the same component highlighting the importance of the washout mechanism. The mean depositional velocity of aerosols evaluated using 7 Be and 210 Pb are similar and are compared to other published values. Copyright © 2017 Elsevier Ltd. All rights reserved.

MICROWAVE IMAGING OF A HOT FLUX ROPE STRUCTURE DURING THE PRE-IMPULSIVE STAGE OF AN ERUPTIVE M7.7 SOLAR FLARE

DOE Office of Scientific and Technical Information (OSTI.GOV)

Wu, Zhao; Chen, Yao; Song, Hongqiang

Corona structures and processes during the pre-impulsive stage of solar eruption are crucial to understanding the physics leading to the subsequent explosive energy release. Here we present the first microwave imaging study of a hot flux rope structure during the pre-impulsive stage of an eruptive M7.7 solar flare, with the Nobeyama Radioheliograph at 17 GHz. The flux rope is also observed by the SDO/AIA in its hot passbands of 94 and 131 Å. In the microwave data, it is revealed as an overall arcade-like structure consisting of several intensity enhancements bridged by generally weak emissions, with brightness temperatures (T{sub B})more » varying from ∼10,000 K to ∼20,000 K. Locations of microwave intensity enhancements along the structure remain relatively fixed at certain specific parts of the flux rope, indicating that the distribution of emitting electrons is affected by the large-scale magnetic configuration of the twisted flux rope. Wavelet analysis shows a pronounced 2 minute period of the microwave T{sub B} variation during the pre-impulsive stage of interest. The period agrees well with that reported for AIA sunward-contracting loops and upward ejective plasmoids (suggested to be reconnection outflows). This suggests that both periodicities are controlled by the same reconnection process that takes place intermittently at a 2 minute timescale. We infer that at least a part of the emission is excited by non-thermal energetic electrons via the gyro-synchrotron mechanism. The study demonstrates the potential of microwave imaging in exploring the flux rope magnetic geometry and relevant reconnection process during the onset of solar eruption.« less

Thermal Evolution of a Failed Flux Rope Eruption Revealed by Temperature Maps

NASA Astrophysics Data System (ADS)

Song, H.; Zhang, J.; CHEN, Y.

2013-12-01

Flux rope is generally considered to be the fundamental magnetic configuration of a coronal mass ejection (CME). Recent observations suggest that hot channel or blob structures during the eruptions be the direct observational manifestation of flux ropes. In this study, we report our analysis of thermal evolution of a failed solar eruption with an apparent flux rope embedded. The thermal structure of the eruption is revealed through differential emission measure (DEM) analysis technique, which shows detailed temperature maps in both high spatial resolution and high temperature resolution based on SDO/AIA observations. Our results show that the flux rope exists in the corona before the eruption, and its temperature can quickly rise to over 10 MK within one minute of the eruption. The correlation study between the flux rope temperature and the soft x-ray flux suggests that the flux rope should be heated through the direct thermal energy release of magnetic reconnection. Further, we study the kinematic evolution process of the flux rope, in an effort to find the physical mechanism that prevents the magnetic rope eruption to become a full coronal mass ejection. This kind of study using temperature maps might reveal where and when magnetic reconnection takes place during solar eruptions.

Glucose metabolic flux distribution of Lactobacillus amylophilus during lactic acid production using kitchen waste saccharified solution.

PubMed

Liu, Jianguo; Wang, Qunhui; Zou, Hui; Liu, Yingying; Wang, Juan; Gan, Kemin; Xiang, Juan

2013-11-01

The (13) C isotope tracer method was used to investigate the glucose metabolic flux distribution and regulation in Lactobacillus amylophilus to improve lactic acid production using kitchen waste saccharified solution (KWSS). The results demonstrate that L. amylophilus is a homofermentative bacterium. In synthetic medium, 60.6% of the glucose entered the Embden-Meyerhof-Parnas (EMP) to produce lactic acid, whereas 36.4% of the glucose entered the pentose phosphate metabolic pathway (HMP). After solid-liquid separation of the KWSS, the addition of Fe(3+) during fermentation enhanced the NADPH production efficiency and increased the NADH content. The flux to the EMP was also effectively increased. Compared with the control (60.6% flux to EMP without Fe(3+) addition), the flux to the EMP with the addition of Fe(3+) (74.3%) increased by 23.8%. In the subsequent pyruvate metabolism, Fe(3+) also increased lactate dehydrogenase activity, and inhibited alcohol dehydrogenase, pyruvate dehydrogenase and pyruvate carboxylase, thereby increasing the lactic acid production to 9.03 g l(-1) , an increase of 8% compared with the control. All other organic acid by-products were lower than in the control. However, the addition of Zn(2+) showed an opposite effect, decreasing the lactic acid production. In conclusion it is feasible and effective means using GC-MS, isotope experiment and MATLAB software to integrate research the metabolic flux distribution of lactic acid bacteria, and the results provide the theoretical foundation for similar metabolic flux distribution. © 2013 The Authors. Microbial Biotechnology published by John Wiley & Sons Ltd and Society for Applied Microbiology.

Hydrologic and forest management controls on DOC dynamics in the small watersheds of the H.J. Andrews Experimental Forest, OR

NASA Astrophysics Data System (ADS)

Lajtha, K.; Jones, J. A.

2016-12-01

Dissolved organic carbon (DOC) export from hillslopes to streams is an important component of the carbon cycle of a catchment and may be a critical source of energy for the aquatic food web in receiving waters. Using a long-term record of DOC and other dissolved nutrients and elements from paired watersheds from the H.J. Andrews Experimental Forest in Oregon, we explored hydrologic, climatic, and land-use controls on seasonal and inter-annual patterns of DOC flux in a seasonally dry ecosystem. Seasonal patterns of DOC flux demonstrated source limitations to DOC export, with DOC concentrations highest immediately following the first rains after a dry summer, and lowest after winter rains. In contrast, more geochemically-controlled elements showed simple dilution-concentration patterns with no seasonal hysteresis. Inter-annual patterns of DOC flux, however, did not provide evidence of source limitation, with DOC flux within a watershed tightly correlated to total discharge but not temperature. Among watersheds, forest harvest, even over 50 years ago, significantly reduced DOC flux but not fluxes of other elements including N; this response was linked to the loading of coarse woody debris to the forest floor. Chemical fingerprinting of DOC revealed that old-growth watersheds had higher fluxes of DOC characteristic of forest floor organic materials, likely delivered to streams through more surficial preferential flow pathways not subject to microbial alteration, respiration, or sorption losses. Taken together these results suggest that the biogeochemical composition of forested streams reflects both current hydrologic patterns and also processes that occurred many decades ago within the catchment.

NUCLEAR REACTOR FUEL ELEMENT

DOEpatents

Currier, E.L. Jr.; Nicklas, J.H.

1963-06-11

A fuel plate is designed for incorporation into control rods of the type utilized in high-flux test reactors. The fuel plate is designed so that the portion nearest the poison section of the control rod contains about one-half as much fissionable material as in the rest of the plate, thereby eliminating dangerous flux peaking in that portion. (AEC)

Using Passive Polyethylene Samplers to Evaluate Chemical Activities Controlling Fluxes and Bioaccumulation of Organic Contaminants in Bed Sediments

DTIC Science & Technology

2010-11-01

carbon flipid fraction lipid foc fraction organic carbon fprotein fraction protein GCMS Gas Chromatography -Mass Spectrometry HP Hunter’s...Internal standards were added to the extracts before gas chromatography -mass spectrometry (GCMS) analysis. GCMS was done using a JEOL GCmate...min. The MS was operated in selected ion monitoring (SIM) and EI+ modes. Calibration standards 6 containing at least 25 aromatic compounds

Phase transition kinetics in DIET of vanadium pentoxide. I. Experimental results

NASA Astrophysics Data System (ADS)

Ai, R.; Fan, H.-J.; Marks, L. D.

1993-01-01

Experimental results of the kinetics of phase transformation in vanadium pentoxide during surface loss of oxygen from electron irradiation are described. Phase transformations under three different regimes were examined: (a) low flux; (b) intermediate flux and (c) high flux. Different phase transformation routes were observed under different fluxes. In a companion paper, numerical calculations are presented demonstrating that these results are due to a mixed interface/diffusion controlled phase transition pumped by surface oxygen loss.

Evaluation of Heat Flux Measurement as a New Process Analytical Technology Monitoring Tool in Freeze Drying.

PubMed

Vollrath, Ilona; Pauli, Victoria; Friess, Wolfgang; Freitag, Angelika; Hawe, Andrea; Winter, Gerhard

2017-05-01

This study investigates the suitability of heat flux measurement as a new technique for monitoring product temperature and critical end points during freeze drying. The heat flux sensor is tightly mounted on the shelf and measures non-invasively (no contact with the product) the heat transferred from shelf to vial. Heat flux data were compared to comparative pressure measurement, thermocouple readings, and Karl Fischer titration as current state of the art monitoring techniques. The whole freeze drying process including freezing (both by ramp freezing and controlled nucleation) and primary and secondary drying was considered. We found that direct measurement of the transferred heat enables more insights into thermodynamics of the freezing process. Furthermore, a vial heat transfer coefficient can be calculated from heat flux data, which ultimately provides a non-invasive method to monitor product temperature throughout primary drying. The end point of primary drying determined by heat flux measurements was in accordance with the one defined by thermocouples. During secondary drying, heat flux measurements could not indicate the progress of drying as monitoring the residual moisture content. In conclusion, heat flux measurements are a promising new non-invasive tool for lyophilization process monitoring and development using energy transfer as a control parameter. Copyright © 2017 American Pharmacists Association®. Published by Elsevier Inc. All rights reserved.

A study of flux control for high-efficiency speed control of variable flux permanent magnet motor

NASA Astrophysics Data System (ADS)

Kim, Young Hyun; Lee, Seong Soo; Lee, Jung Ho

2018-05-01

In this study, we evaluate the performance of permanent magnets (PMs). The efficiency of attraction in the high speed region was studied using the variable flux memory motor (VFMM). It is presented in order to analyze the magnetic characteristics of PMs, using the second quadrant plan data with re- and de-magnetization. In addition, this study focuses on the evaluation of operational characteristics relative to the magnetizing directions according to the d-axis currents, by using one of the finite element solutions. The feasibility of application for the VFMM has been experimentally demonstrated.

A system and methodology for measuring volatile organic compounds produced by hydroponic lettuce in a controlled environment

NASA Technical Reports Server (NTRS)

Charron, C. S.; Cantliffe, D. J.; Wheeler, R. M.; Manukian, A.; Heath, R. R.

1996-01-01

A system and methodology were developed for the nondestructive qualitative and quantitative analysis of volatile emissions from hydroponically grown 'Waldmann's Green' leaf lettuce (Lactuca sativa L.). Photosynthetic photon flux (PPF), photoperiod, and temperature were automatically controlled and monitored in a growth chamber modified for the collection of plant volatiles. The lipoxygenase pathway products (Z)-3-hexenal, (Z)-3-hexenol, and (Z)-3-hexenyl acetate were emitted by lettuce plants after the transition from the light period to the dark period. The volatile collection system developed in this study enabled measurements of volatiles emitted by intact plants, from planting to harvest, under controlled environmental conditions.

Genome-Based Metabolic Mapping and 13C Flux Analysis Reveal Systematic Properties of an Oleaginous Microalga Chlorella protothecoides

DOE PAGES

Wu, Chao; Xiong, Wei; Dai, Junbiao; ...

2014-12-15

We report that integrated and genome-based flux balance analysis, metabolomics, and 13C-label profiling of phototrophic and heterotrophic metabolism in Chlorella protothecoides, an oleaginous green alga for biofuel. The green alga Chlorella protothecoides, capable of autotrophic and heterotrophic growth with rapid lipid synthesis, is a promising candidate for biofuel production. Based on the newly available genome knowledge of the alga, we reconstructed the compartmentalized metabolic network consisting of 272 metabolic reactions, 270 enzymes, and 461 encoding genes and simulated the growth in different cultivation conditions with flux balance analysis. Phenotype-phase plane analysis shows conditions achieving theoretical maximum of the biomass andmore » corresponding fatty acid-producing rate for phototrophic cells (the ratio of photon uptake rate to CO 2 uptake rate equals 8.4) and heterotrophic ones (the glucose uptake rate to O 2 consumption rate reaches 2.4), respectively. Isotope-assisted liquid chromatography-mass spectrometry/mass spectrometry reveals higher metabolite concentrations in the glycolytic pathway and the tricarboxylic acid cycle in heterotrophic cells compared with autotrophic cells. We also observed enhanced levels of ATP, nicotinamide adenine dinucleotide (phosphate), reduced, acetyl-Coenzyme A, and malonyl-Coenzyme A in heterotrophic cells consistently, consistent with a strong activity of lipid synthesis. To profile the flux map in experimental conditions, we applied nonstationary 13C metabolic flux analysis as a complementing strategy to flux balance analysis. We found that the result reveals negligible photorespiratory fluxes and a metabolically low active tricarboxylic acid cycle in phototrophic C. protothecoides. In comparison, high throughput of amphibolic reactions and the tricarboxylic acid cycle with no glyoxylate shunt activities were measured for heterotrophic cells. Lastly, taken together, the metabolic network modeling assisted by experimental metabolomics and 13C labeling better our understanding on global metabolism of oleaginous alga, paving the way to the systematic engineering of the microalga for biofuel production.« less

Coordinated field study for CaPE: Analysis of energy and water budgets

NASA Technical Reports Server (NTRS)

Goodman, Steven J.; Duchon, Claude; Kanemasu, Edward T.; Smith, Eric A.; Crosson, William; Laymon, Chip; Luvall, Jeff

1993-01-01

The objectives of this hydrologic cycle study are to understand and model (1) surface energy and land-atmosphere water transfer processes, and (2) interactions between convective storms and surface energy fluxes. A surface energy budget measurement campaign was carried out by an interdisciplinary science team during the period July 8 - August 19, 1991 as part of the Convection and Precipitation/Electrification Experiment (CaPE) in the vicinity of Cape Canaveral, FL. Among the research themes associated with CaPE is the remote estimation of rainfall. Thus, in addition to surface radiation and energy budget measurements, surface mesonet, special radiosonde, precipitation, high-resolution satellite (SPOT) data, geosynchronous (GOES) and polar orbiting (DMSP SSM/I, OLS; NOAA AVHRR) satellite data, and high altitude airplane data (AMPR, MAMS, HIS) were collected. Initial quality control of the seven surface flux station data sets has begun. Ancillary data sets are being collected and assembled for analysis. Browsing of GOES and radar data has begun to classify days as disturbed/undisturbed to identify the larger scale forcing of the pre-convective environment, convection storms and precipitation. The science analysis plan has been finalized and tasks assigned to various investigators.

Redirection of the Respiro-Fermentative Flux Distribution in Saccharomyces cerevisiae by Overexpression of the Transcription Factor Hap4p

PubMed Central

Blom, Jolanda; De Mattos, M. Joost Teixeira; Grivell, Leslie A.

2000-01-01

Reduction of aerobic fermentation on sugars by altering the fermentative/oxidative balance is of significant interest for optimization of industrial production of Saccharomyces cerevisiae. Glucose control of oxidative metabolism in baker's yeast is partly mediated through transcriptional regulation of the Hap4p subunit of the Hap2/3/4/5p transcriptional activator complex. To alleviate glucose repression of oxidative metabolism, we constructed a yeast strain with constitutively elevated levels of Hap4p. Genetic analysis of expression levels of glucose-repressed genes and analysis of respiratory capacity showed that Hap4p overexpression (partly) relieves glucose repression of respiration. Analysis of the physiological properties of the Hap4p overproducer in batch cultures in fermentors (aerobic, glucose excess) has shown that the metabolism of this strain is more oxidative than in the wild-type strain, resulting in a significant reduced ethanol production and improvement of growth rate and a 40% gain in biomass yield. Our results show that modification of one or more transcriptional regulators can be a powerful and a widely applicable tool for redirection of metabolic fluxes in microorganisms. PMID:10788368

FluxSuite: a New Scientific Tool for Advanced Network Management and Cross-Sharing of Next-Generation Flux Stations

NASA Astrophysics Data System (ADS)

Burba, G. G.; Johnson, D.; Velgersdyk, M.; Beaty, K.; Forgione, A.; Begashaw, I.; Allyn, D.

2015-12-01

Significant increases in data generation and computing power in recent years have greatly improved spatial and temporal flux data coverage on multiple scales, from a single station to continental flux networks. At the same time, operating budgets for flux teams and stations infrastructure are getting ever more difficult to acquire and sustain. With more stations and networks, larger data flows from each station, and smaller operating budgets, modern tools are needed to effectively and efficiently handle the entire process. This would help maximize time dedicated to answering research questions, and minimize time and expenses spent on data processing, quality control and station management. Cross-sharing the stations with external institutions may also help leverage available funding, increase scientific collaboration, and promote data analyses and publications. FluxSuite, a new advanced tool combining hardware, software and web-service, was developed to address these specific demands. It automates key stages of flux workflow, minimizes day-to-day site management, and modernizes the handling of data flows: Each next-generation station measures all parameters needed for flux computations Field microcomputer calculates final fully-corrected flux rates in real time, including computation-intensive Fourier transforms, spectra, co-spectra, multiple rotations, stationarity, footprint, etc. Final fluxes, radiation, weather and soil data are merged into a single quality-controlled file Multiple flux stations are linked into an automated time-synchronized network Flux network manager, or PI, can see all stations in real time, including fluxes, supporting data, automated reports, and email alerts PI can assign rights, allow or restrict access to stations and data: selected stations can be shared via rights-managed access internally or with external institutions Researchers without stations could form "virtual networks" for specific projects by collaborating with PIs from different actual networks This presentation provides detailed examples of FluxSuite currently utilized by two large flux networks in China (National Academy of Sciences & Agricultural Academy of Sciences), and smaller networks with stations in the USA, Germany, Ireland, Malaysia and other locations around the globe.

Periodicities observed on solar flux index (F10.7) during geomagnetic disturbances

NASA Astrophysics Data System (ADS)

Adhikari, B.; Narayan, C.; Chhatkuli, D. N.

2017-12-01

Solar activities change within the period of 11 years. Sometimes the greatest event occurs in the period of solar maxima and the lowest activity occurs in the period of solar minimum. During the time period of solar activity sunspots number will vary. A 10.7 cm solar flux measurement is a determination of the strength of solar radio emission. The solar flux index is more often used for the prediction and monitoring of the solar activity. This study mainly focused on the variation on solar flux index and amount of electromagnetic wave in the atmosphere. Both seasonal and yearly variation on solar F10.7 index. We also analyzed the dataset obatained from riometer.Both instruments show seasonal and yearly variations. We also observed the solar cycle dependence on solar flux index and found a strong dependence on solar activity. Results also show that solar intensities higher during the rising phase of solar cycle. We also observed periodicities on solar flux index using wavelet analysis. Through this analysis, it was found that the power intensities of solar flux index show a high spectral variability.

Design of a Modular E-Core Flux Concentrating Axial Flux Machine: Preprint

DOE Office of Scientific and Technical Information (OSTI.GOV)

Husain, Tausif; Sozer, Yilmaz; Husain, Iqbal

2015-08-24

In this paper a novel E-Core axial flux machine is proposed. The machine has a double-stator, single-rotor configuration with flux-concentrating ferrite magnets and pole windings across each leg of an E-Core stator. E-Core stators with the proposed flux-concentrating rotor arrangement result in better magnet utilization and higher torque density. The machine also has a modular structure facilitating simpler construction. This paper presents a single-phase and a three-phase version of the E-Core machine. Case studies for a 1.1-kW, 400-rpm machine for both the single-phase and three-phase axial flux machines are presented. The results are verified through 3D finite element analysis. facilitatingmore » simpler construction. This paper presents a single-phase and a three-phase version of the E-Core machine. Case studies for a 1.1-kW, 400-rpm machine for both the single-phase and three-phase axial flux machines are presented. The results are verified through 3D finite element analysis.« less

Time-series analysis of energetic electron fluxes (1. 2 - 16 MeV) at geosynchronous altitude. Master's thesis

DOE Office of Scientific and Technical Information (OSTI.GOV)

Halpin, M.P.

This project used a Box and Jenkins time-series analysis of energetic electron fluxes measured at geosynchronous orbit in an effort to derive prediction models for the flux in each of five energy channels. In addition, the technique of transfer function modeling described by Box and Jenkins was used in an attempt to derive input-output relationships between the flux channels (viewed as the output) and the solar-wind speed or interplanetary magnetic field (IMF) north-south component, Bz, (viewed as the input). The transfer function modeling was done in order to investigate the theoretical dynamic relationship which is believed to exist between themore » solar wind, the IMF Bz, and the energetic electron flux in the magnetosphere. The models derived from the transfer-function techniques employed were also intended to be used in the prediction of flux values. The results from this study indicate that the energetic electron flux changes in the various channels are dependent on more than simply the solar-wind speed or the IMF Bz.« less

Atmospheric nitrogen deposition to China: a model analysis on nitrogen budget and critical load exceedance

NASA Astrophysics Data System (ADS)

Zhao, Y.; Zhang, L.; Chen, Y.; Liu, X.; Xu, W.; Pan, Y.; Duan, L.

2016-12-01

We present a national-scale model analysis of the sources and processes of inorganic nitrogen deposition over China using the GEOS-Chem model at 1/2°×1/3° horizontal resolution. Averaged model results for 2008-2012 are evaluated with an ensemble of surface measurements of nitrogen wet deposition flux and concentration, and satellite measurements of tropospheric NO2 columns. Annual inorganic nitrogen deposition fluxes are shown to be generally less than 10 kg N ha-1 a-1 in the western China, 15-50 kg N ha-1 a-1 in the eastern China, and 15.6 kg N ha-1 a-1 averaged over China. The model simulates an annual total deposition flux of 16.4 Tg N to China, with 10.3 Tg N (63%) from reduced nitrogen (NHx) and 6.2 Tg N from oxidized nitrogen (NOy). Domestic anthropogenic sources contribute 86% of the total deposition; foreign anthropogenic sources 7% and natural sources 7%. Annually 23% of domestically emitted NH3 and 36% for NOx are exported out of China. We also find while nitrogen deposition to China is comparable to the nitrogen input from fertilizer application (16.5 Tg N a-1) on the national scale, it is much more widely distributed spatially. The deposition flux is also much higher than natural biological fixation (7.3 Tg N a-1). A comparison with estimates of nitrogen critical load for eutrophication indicates that about 40% of the land over China faces nitrogen critical load exceedances. However, 45% of the exceeding areas, mainly in Beijing-Tianjin-Hebei, Central China, East China, and South China, will not occur in the absence of nitrogen deposition, demonstrating the necessity of nitrogen emission controls to avoid potential negative ecological effects over these areas.

DOE Office of Scientific and Technical Information (OSTI.GOV)

Gelfand, Ilya; Cui, Mengdi; Tang, Jianwu

Climate change is causing the intensification of both rainfall and droughts in temperate climatic zones, which will affect soil drying and rewetting cycles and associated processes such as soil greenhouse gas (GHG) fluxes. Here, we investigated the effect of soil rewetting following a prolonged natural drought on soil emissions of nitrous oxide (N 2O) and carbon dioxide (CO 2) in an agricultural field recently converted from 22 years in the USDA Conservation Reserve Program (CRP). We compared responses to those in a similarly managed field with no CRP history and to a CRP reference field. We additionally compared soil GHGmore » emissions measured by static flux chambers with off-site laboratory analysis versus in situ analysis using a portable quantum cascade laser and infrared gas analyzer. Under growing season drought conditions, average soil N 2O fluxes ranged between 0.2 and 0.8 μg N m -2 min -1 and were higher in former CRP soils and unaffected by nitrogen (N) fertilization. After 18 days of drought, a 50 mm rewetting event increased N 2O fluxes by 34 and 24 fold respectively in the former CRP and non-CRP soils. Average soil CO 2 emissions during drought ranged from 1.1 to 3.1 mg C m -2 min -1 for the three systems. CO 2 emissions increased ~2 fold after the rewetting and were higher from soils with higher C contents. Observations are consistent with the hypothesis that during drought soil N 2O emissions are controlled by available C and following rewetting additionally influenced by N availability, whereas soil CO 2 emissions are independent of short-term N availability. Finally, soil GHG emissions estimated by off-site and in situ methods were statistically identical.« less

Rill erosion in burned and salvage logged western montane forests: Effects of logging equipment type, traffic level, and slash treatment

NASA Astrophysics Data System (ADS)

Wagenbrenner, J. W.; Robichaud, P. R.; Brown, R. E.

2016-10-01

Following wildfires, forest managers often consider salvage logging burned trees to recover monetary value of timber, reduce fuel loads, or to meet other objectives. Relatively little is known about the cumulative hydrologic effects of wildfire and subsequent timber harvest using logging equipment. We used controlled rill experiments in logged and unlogged (control) forests burned at high severity in northern Montana, eastern Washington, and southern British Columbia to quantify rill overland flow and sediment production rates (fluxes) after ground-based salvage logging. We tested different types of logging equipment-feller-bunchers, tracked and wheeled skidders, and wheeled forwarders-as well as traffic levels and the addition of slash to skid trails as a best management practice. Rill experiments were done at each location in the first year after the fire and repeated in subsequent years. Logging was completed in the first or second post-fire year. We found that ground-based logging using heavy equipment compacted soil, reduced soil water repellency, and reduced vegetation cover. Vegetation recovery rates were slower in most logged areas than the controls. Runoff rates were higher in the skidder and forwarder plots than their respective controls in the Montana and Washington sites in the year that logging occurred, and the difference in runoff between the skidder and control plots at the British Columbia site was nearly significant (p = 0.089). Most of the significant increases in runoff in the logged plots persisted for subsequent years. The type of skidder, the addition of slash, and the amount of forwarder traffic did not significantly affect the runoff rates. Across the three sites, rill sediment fluxes were 5-1900% greater in logged plots than the controls in the year of logging, and the increases were significant for all logging treatments except the low use forwarder trails. There was no difference in the first-year sediment fluxes between the feller-buncher and tracked skidder plots, but the feller-buncher fluxes were lower than the values from the wheeled skidder plots. Manually adding slash after logging did not affect sediment flux rates. There were no significant changes in the control sediment fluxes over time, and none of the logging equipment impacted plots produced greater sediment fluxes than the controls in the second or third year after logging. Our results indicate that salvage logging increases the risk of sedimentation regardless of equipment type and amount of traffic, and that specific best management practices are needed to mitigate the hydrologic impacts of post-fire salvage logging.

Short-term favorable weather conditions are an important control of interannual variability in carbon and water fluxes

Treesearch

Jakob Zscheischler; Simone Fatichi; Sebastian Wolf; Peter D. Blanken; Gil Bohrer; Ken Clark; Ankur R. Desai; David Hollinger; Trevor Keenan; Kimberly A. Novick; Sonia I. Seneviratne

2016-01-01

Ecosystem models often perform poorly in reproducing interannual variability in carbon and water fluxes, resulting in considerable uncertainty when estimating the land-carbon sink. While many aggregated variables (growing season length, seasonal precipitation, or temperature) have been suggested as predictors for interannual variability in carbon fluxes, their...

Metabolic cartography: experimental quantification of metabolic fluxes from isotopic labelling studies.

PubMed

O'Grady, John; Schwender, Jörg; Shachar-Hill, Yair; Morgan, John A

2012-03-01

For the past decade, flux maps have provided researchers with an in-depth perspective on plant metabolism. As a rapidly developing field, significant headway has been made recently in computation, experimentation, and overall understanding of metabolic flux analysis. These advances are particularly applicable to the study of plant metabolism. New dynamic computational methods such as non-stationary metabolic flux analysis are finding their place in the toolbox of metabolic engineering, allowing more organisms to be studied and decreasing the time necessary for experimentation, thereby opening new avenues by which to explore the vast diversity of plant metabolism. Also, improved methods of metabolite detection and measurement have been developed, enabling increasingly greater resolution of flux measurements and the analysis of a greater number of the multitude of plant metabolic pathways. Methods to deconvolute organelle-specific metabolism are employed with increasing effectiveness, elucidating the compartmental specificity inherent in plant metabolism. Advances in metabolite measurements have also enabled new types of experiments, such as the calculation of metabolic fluxes based on (13)CO(2) dynamic labelling data, and will continue to direct plant metabolic engineering. Newly calculated metabolic flux maps reveal surprising and useful information about plant metabolism, guiding future genetic engineering of crops to higher yields. Due to the significant level of complexity in plants, these methods in combination with other systems biology measurements are necessary to guide plant metabolic engineering in the future.

Modeling of phosphorus fluxes produced by wild fires at watershed scales.

NASA Astrophysics Data System (ADS)

Matyjasik, M.; Hernandez, M.; Shaw, N.; Baker, M.; Fowles, M. T.; Cisney, T. A.; Jex, A. P.; Moisen, G.

2017-12-01

River runoff is one of the controlling processes in the terrestrial phosphorus cycle. Phosphorus is often a limiting factor in fresh water. One of the factors that has not been studied and modeled in detail is phosporus flux produced from forest wild fires. Phosphate released by weathering is quickly absorbed in soils. Forest wild fires expose barren soils to intensive erosion, thus releasing relatively large fluxes of phosphorus. Measurements from three control burn sites were used to correlate erosion with phosphorus fluxes. These results were used to model phosphorus fluxes from burned watersheds during a five year long period after fires occurred. Erosion in our model is simulated using a combination of two models: the WEPP (USDA Water Erosion Prediction Project) and the GeoWEPP (GIS-based Water Erosion Prediction Project). Erosion produced from forest disturbances is predicted for any watershed using hydrologic, soil, and meteorological data unique to the individual watersheds or individual slopes. The erosion results are modified for different textural soil classes and slope angles to model fluxes of phosphorus. The results of these models are calibrated using measured concentrations of phosphorus for three watersheds located in the Interior Western United States. The results will help the United States Forest Service manage phosporus fluxes in national forests.

Evaluation of stormwater micropollutant source control and end-of-pipe control strategies using an uncertainty-calibrated integrated dynamic simulation model.

PubMed

Vezzaro, L; Sharma, A K; Ledin, A; Mikkelsen, P S

2015-03-15

The estimation of micropollutant (MP) fluxes in stormwater systems is a fundamental prerequisite when preparing strategies to reduce stormwater MP discharges to natural waters. Dynamic integrated models can be important tools in this step, as they can be used to integrate the limited data provided by monitoring campaigns and to evaluate the performance of different strategies based on model simulation results. This study presents an example where six different control strategies, including both source-control and end-of-pipe treatment, were compared. The comparison focused on fluxes of heavy metals (copper, zinc) and organic compounds (fluoranthene). MP fluxes were estimated by using an integrated dynamic model, in combination with stormwater quality measurements. MP sources were identified by using GIS land usage data, runoff quality was simulated by using a conceptual accumulation/washoff model, and a stormwater retention pond was simulated by using a dynamic treatment model based on MP inherent properties. Uncertainty in the results was estimated with a pseudo-Bayesian method. Despite the great uncertainty in the MP fluxes estimated by the runoff quality model, it was possible to compare the six scenarios in terms of discharged MP fluxes, compliance with water quality criteria, and sediment accumulation. Source-control strategies obtained better results in terms of reduction of MP emissions, but all the simulated strategies failed in fulfilling the criteria based on emission limit values. The results presented in this study shows how the efficiency of MP pollution control strategies can be quantified by combining advanced modeling tools (integrated stormwater quality model, uncertainty calibration). Copyright © 2014 Elsevier Ltd. All rights reserved.

Post flight system analysis of FRECOPA (AO 138)

NASA Technical Reports Server (NTRS)

Durin, Christian

1991-01-01

The unexpected duration for the flight of the Long Duration Exposure Facility (LDEF) conducted CNES to create a special investigation group in order to analyze all the materials and systems which compose the French Cooperative Payload (FRECOPA) except the experiments especially prepared for the flight. The FRECOPA tray was on the trailing face (V-) of the LDEF and protected from the atomic oxygen flux during all the flight. However, the solar irradiation was very important with solar flux quite perpendicular to the experiment once an orbit. There was also a good vacuum environment. The objectives are to test the effects of the combined space environment on materials and components like: structure, thermal control coatings and blankets, electronic unit, motors, and mechanical fixtures. When the LDEF returned to Kennedy Space Center, a visual inspection showed the very good behavior of the materials used and it was noted that the three mechanisms to open and close the experiment canisters worked completely. Many impacts of micrometeoroids or space debris on the structure and on the thermal protections were observed. After FRECOPA was brought back to Toulouse, many tests were performed and include: working order tests, mechanical tests (tension), optical and electronic microscopy (SEM), surface analysis (ESCA, SIMS, RBS, AUGER, etc.), thermal analysis, pressure measurements, and gas analysis (outgassing tests). The results of these experiments are discussed.

Study the Effect of SiO2 Based Flux on Dilution in Submerged Arc Welding

NASA Astrophysics Data System (ADS)

kumar, Aditya; Maheshwari, Sachin

2017-08-01

This paper highlights the method for prediction of dilution in submerged arc welding (SAW). The most important factors of weld bead geometry are governed by the weld dilution which controls the chemical and mechanical properties. Submerged arc welding process is used generally due to its very easy control of process variables, good penetration, high weld quality, and smooth finish. Machining parameters, with suitable weld quality can be achieved with the different composition of the flux in the weld. In the present study Si02-Al2O3-CaO flux system was used. In SiO2 based flux NiO, MnO, MgO were mixed in various proportions. The paper investigates the relationship between the process parameters like voltage, % of flux constituents and dilution with the help of Taguchi’s method. The experiments were designed according to Taguchi L9 orthogonal array, while varying the voltage at two different levels in addition to alloying elements. Then the optimal results conditions were verified by confirmatory experiments.

Parallel labeling experiments for pathway elucidation and (13)C metabolic flux analysis.

PubMed

Antoniewicz, Maciek R

2015-12-01

Metabolic pathway models provide the foundation for quantitative studies of cellular physiology through the measurement of intracellular metabolic fluxes. For model organisms metabolic models are well established, with many manually curated genome-scale model reconstructions, gene knockout studies and stable-isotope tracing studies. However, for non-model organisms a similar level of knowledge is often lacking. Compartmentation of cellular metabolism in eukaryotic systems also presents significant challenges for quantitative (13)C-metabolic flux analysis ((13)C-MFA). Recently, innovative (13)C-MFA approaches have been developed based on parallel labeling experiments, the use of multiple isotopic tracers and integrated data analysis, that allow more rigorous validation of pathway models and improved quantification of metabolic fluxes. Applications of these approaches open new research directions in metabolic engineering, biotechnology and medicine. Copyright © 2015 Elsevier Ltd. All rights reserved.

Non-stationary (13)C-metabolic flux ratio analysis.

PubMed

Hörl, Manuel; Schnidder, Julian; Sauer, Uwe; Zamboni, Nicola

2013-12-01

(13)C-metabolic flux analysis ((13)C-MFA) has become a key method for metabolic engineering and systems biology. In the most common methodology, fluxes are calculated by global isotopomer balancing and iterative fitting to stationary (13)C-labeling data. This approach requires a closed carbon balance, long-lasting metabolic steady state, and the detection of (13)C-patterns in a large number of metabolites. These restrictions mostly reduced the application of (13)C-MFA to the central carbon metabolism of well-studied model organisms grown in minimal media with a single carbon source. Here we introduce non-stationary (13)C-metabolic flux ratio analysis as a novel method for (13)C-MFA to allow estimating local, relative fluxes from ultra-short (13)C-labeling experiments and without the need for global isotopomer balancing. The approach relies on the acquisition of non-stationary (13)C-labeling data exclusively for metabolites in the proximity of a node of converging fluxes and a local parameter estimation with a system of ordinary differential equations. We developed a generalized workflow that takes into account reaction types and the availability of mass spectrometric data on molecular ions or fragments for data processing, modeling, parameter and error estimation. We demonstrated the approach by analyzing three key nodes of converging fluxes in central metabolism of Bacillus subtilis. We obtained flux estimates that are in agreement with published results obtained from steady state experiments, but reduced the duration of the necessary (13)C-labeling experiment to less than a minute. These results show that our strategy enables to formally estimate relative pathway fluxes on extremely short time scale, neglecting cellular carbon balancing. Hence this approach paves the road to targeted (13)C-MFA in dynamic systems with multiple carbon sources and towards rich media. © 2013 Wiley Periodicals, Inc.

Transmission and scattering of acoustic energy in turbulent flows

NASA Astrophysics Data System (ADS)

Gaitonde, Datta; Unnikrishnan, S.

2017-11-01

Sound scattering and transmission in turbulent jets are explored through a control volume analysis of a Large-Eddy Simulation. The fluctuating momentum flux across any control surface is first split into its rotational turbulent ((ρu)'H) and the irrotational-isentropic acoustic ((ρu)'A) components using momentum potential theory (MPT). The former has low spatio-temporal coherence, while the latter exhibits a persistent wavepacket form. The energy variable, specifically, total fluctuating enthalpy, is also split into its turbulent and acoustic modes, HH' and HA' respectively. Scattering of acoustic energy is then (ρu)'HHA' , and transmission is (ρu)'AHA' . This facilitates a quantitative comparison of scattering versus transmission in the presence of acoustic energy sources, also obtained from MPT, in any turbulent scenario. The wavepacket converts stochastic sound sources into coherent sound radiation. Turbulent eddies are not only sources of sound, but also play a strong role in scattering, particularly near the lipline. The net acoustic flux from the jet is the transport of HA' by the wavepacket, whose axisymmetric and higher azimuthal modes contribute to downstream and sideline radiation respectively.

Hydroclimatic Controls over Global Variations in Phenology and Carbon Flux

NASA Technical Reports Server (NTRS)

Koster, Randal; Walker, G.; Thornton, Patti; Collatz, G. J.

2012-01-01

The connection between phenological and hydroclimatological variations are quantified through joint analyses of global NDVI, LAI, and precipitation datasets. The global distributions of both NDVI and LAI in the warm season are strongly controlled by three quantities: mean annual precipitation, the standard deviation of annual precipitation, and Budyko's index of dryness. Upon demonstrating that these same basic (if biased) relationships are produced by a dynamic vegetation model (the dynamic vegetation and carbon storage components of the NCAR Community Land Model version 4 combined with the water and energy balance framework of the Catchment Land Surface Model of the NASA Global Modeling and Assimilation Office), we use the model to perform a sensitivity study focusing on how phenology and carbon flux might respond to climatic change. The offline (decoupled from the atmosphere) simulations show us, for example, where on the globe a given small increment in precipitation mean or variability would have the greatest impact on carbon uptake. The analysis framework allows us in addition to quantify the degree to which climatic biases in a free-running GCM are manifested as biases in simulated phenology.

Hydroclimatic Controls over Global Variations in Phenology and Carbon Flux

NASA Astrophysics Data System (ADS)

Koster, R. D.; Walker, G.; Thornton, P. E.; Collatz, G. J.

2012-12-01

The connection between phenological and hydroclimatological variations are quantified through joint analyses of global NDVI, LAI, and precipitation datasets. The global distributions of both NDVI and LAI in the warm season are strongly controlled by three quantities: mean annual precipitation, the standard deviation of annual precipitation, and Budyko's index of dryness. Upon demonstrating that these same basic (if somewhat biased) relationships are produced by a dynamic vegetation model (the dynamic vegetation and carbon storage components of the NCAR Community Land Model version 4 combined with the water and energy balance framework of the Catchment Land Surface Model of the NASA Global Modeling and Assimilation Office), we use the model to perform a sensitivity study focusing on how phenology and carbon flux might respond to climatic change. The offline (decoupled from the atmosphere) simulations show us, for example, where on the globe a given small increment in precipitation mean or variability would have the greatest impact on carbon uptake. The analysis framework allows us in addition to quantify the degree to which climatic biases in a free-running GCM are manifested as biases in simulated phenology.

Evaluation of heat and particle controllability on the JT-60SA divertor

NASA Astrophysics Data System (ADS)

Kawashima, H.; Hoshino, K.; Shimizu, K.; Takizuka, T.; Ide, S.; Sakurai, S.; Asakura, N.

2011-08-01

The JT-60SA divertor design has been established on the basis of engineering requirements and physics analysis. Heat and particle fluxes under the full input power of 41 MW can give severe heat loads on the divertor targets, while the allowable heat load is limited below 15 MW/m2. Dependence of the heat flux mitigation on a D2 gas-puff is evaluated by SONIC simulations for high density (ne_ave ˜ 1 × 1020 m-3) high current plasmas. It is found that the peak heat load 10 MW/m2 with dense (ned > 4 × 1020 m-3) and cold (Ted, Tid ⩽ 1 eV) divertor plasmas are obtained at a moderate gas-puff of Γpuff = 15 × 1021 s-1. Divertor plasmas are controlled from attached to detached condition using the divertor pump with pumping-speed below 100 m3/s. In full non-inductive current drive plasmas with low density (ne_ave ˜ 5 × 1019 m-3), the reduction of divertor heat load is achieved with the Ar injection.

A Model For Selecting An Environmentally Responsive Trait: Evaluating Micro-scale Fitness Through UV-C Resistance and Exposure in Escherichia coli.

NASA Astrophysics Data System (ADS)

Schenone, D. J.; Igama, S.; Marash-Whitman, D.; Sloan, C.; Okansinski, A.; Moffet, A.; Grace, J. M.; Gentry, D.

2015-12-01

Experimental evolution of microorganisms in controlled microenvironments serves as a powerful tool for understanding the relationship between micro-scale microbial interactions as well as local-to global-scale environmental factors. In response to iterative and targeted environmental pressures, mutagenesis drives the emergence of novel phenotypes. Current methods to induce expression of these phenotypes require repetitive and time intensive procedures and do not allow for the continuous monitoring of conditions such as optical density, pH and temperature. To address this shortcoming, an Automated Dynamic Directed Evolution Chamber is being developed. It will initially produce Escherichia coli cells with an elevated UV-C resistance phenotype that will ultimately be adapted for different organisms as well as studying environmental effects. A useful phenotype and environmental factor for examining this relationship is UV-C resistance and exposure. In order to build a baseline for the device's operational parameters, a UV-C assay was performed on six E. coli replicates with three exposure fluxes across seven iterations. The fluxes included a 0 second exposure (control), 6 seconds at 3.3 J/m2/s and 40 seconds at 0.5 J/m2/s. After each iteration the cells were regrown and tested for UV-C resistance. We sought to quantify the increase and variability of UV-C resistance among different fluxes, and observe changes in each replicate at each iteration in terms of variance. Under different fluxes, we observed that the 0s control showed no significant increase in resistance, while the 6s/40s fluxes showed increased resistance as the number of iterations increased. A one-million fold increase in survivability was observed after seven iterations. Through statistical analysis using Spearman's rank correlation, the 40s exposure showed signs of more consistently increased resistance, but seven iterations was insufficient to demonstrate statistical significance; to test this further, our experiments will include more iterations. Furthermore, we plan to sequence all the replicants. As adaptation dynamics under intense UV exposure leads to high rate of change, it would be useful to observe differences in tolerance-related and non-tolerance-related genes between the original and UV resistant strains.

Levitation in the field of a nonsuperconducting coil with magnetic flux stabilization

NASA Astrophysics Data System (ADS)

Koshurnikov, E. K.

2013-09-01

A method providing the "frozen flux" conditions in a nonsuperconducting coil is suggested and demonstrated with a model. The feasibility of permanent magnet stable levitation in the field of the coil with magnetic flux stabilization and mean current control is shown. The method allows researchers to exploit permanent magnet-superconducting body interaction in physical devices, for example, to reproduce, using nonsuperconducting coils, the frozen magnetic flux conditions required for the stable levitation of the magnet over a superconducting body.

A multi-site analysis of random error in tower-based measurements of carbon and energy fluxes

Treesearch

Andrew D. Richardson; David Y. Hollinger; George G. Burba; Kenneth J. Davis; Lawrence B. Flanagan; Gabriel G. Katul; J. William Munger; Daniel M. Ricciuto; Paul C. Stoy; Andrew E. Suyker; Shashi B. Verma; Steven C. Wofsy; Steven C. Wofsy

2006-01-01

Measured surface-atmosphere fluxes of energy (sensible heat, H, and latent heat, LE) and CO2 (FCO2) represent the ``true?? flux plus or minus potential random and systematic measurement errors. Here, we use data from seven sites in the AmeriFlux network, including five forested sites (two of which include ``tall tower?? instrumentation), one grassland site, and one...

Quantitative Analysis of NAD Synthesis-Breakdown Fluxes.

PubMed

Liu, Ling; Su, Xiaoyang; Quinn, William J; Hui, Sheng; Krukenberg, Kristin; Frederick, David W; Redpath, Philip; Zhan, Le; Chellappa, Karthikeyani; White, Eileen; Migaud, Marie; Mitchison, Timothy J; Baur, Joseph A; Rabinowitz, Joshua D

2018-05-01

The redox cofactor nicotinamide adenine dinucleotide (NAD) plays a central role in metabolism and is a substrate for signaling enzymes including poly-ADP-ribose-polymerases (PARPs) and sirtuins. NAD concentration falls during aging, which has triggered intense interest in strategies to boost NAD levels. A limitation in understanding NAD metabolism has been reliance on concentration measurements. Here, we present isotope-tracer methods for NAD flux quantitation. In cell lines, NAD was made from nicotinamide and consumed largely by PARPs and sirtuins. In vivo, NAD was made from tryptophan selectively in the liver, which then excreted nicotinamide. NAD fluxes varied widely across tissues, with high flux in the small intestine and spleen and low flux in the skeletal muscle. Intravenous administration of nicotinamide riboside or mononucleotide delivered intact molecules to multiple tissues, but the same agents given orally were metabolized to nicotinamide in the liver. Thus, flux analysis can reveal tissue-specific NAD metabolism. Copyright © 2018 Elsevier Inc. All rights reserved.

Analysis of Plasma Detachment through Magnetic Nozzle via Canonical Field Theory

NASA Astrophysics Data System (ADS)

Takagaki, Yu

In this paper, I have investigated the mechanism of plasma detachment through magnetic nozzle via canonical field theory, especially by considering canonical vorticity flux Psisigma contour and dissipative force vector Rsigma. As one of the most recent experimental proofs of plasma detachment, Olsen et al., observed and investigated three key indications of plasma detachment. However, after solving for numerical fits with their experimental data, I found that constant ion flux lines did not actually separate from constant magnetic flux lines. Thus, their first key indication becomes incorrect now. Whereas, my analytical results are consistent with the other two key indications. At the beginning, plasma detached from canonical vorticity flux contours due to non-zero dissipative force and attached on magnetic flux lines instead. However, vector Rsigma [is asymptotically equal to] 0 force makes plasma re-attach on canonical vorticity flux contours around the plume edge region. As the most significant and notable result through my analysis, I confirmed the existence of returning plasma flow around the plume edge region.

Exploring the Underlying Mechanisms of the Xenopus laevis Embryonic Cell Cycle.

PubMed

Zhang, Kun; Wang, Jin

2018-05-31

The cell cycle is an indispensable process in proliferation and development. Despite significant efforts, global quantification and physical understanding are still challenging. In this study, we explored the mechanisms of the Xenopus laevis embryonic cell cycle by quantifying the underlying landscape and flux. We uncovered the Mexican hat landscape of the Xenopus laevis embryonic cell cycle with several local basins and barriers on the oscillation path. The local basins characterize the different phases of the Xenopus laevis embryonic cell cycle, and the local barriers represent the checkpoints. The checkpoint mechanism of the cell cycle is revealed by the landscape basins and barriers. While landscape shape determines the stabilities of the states on the oscillation path, the curl flux force determines the stability of the cell cycle flow. Replication is fundamental for biology of living cells. We quantify the input energy (through the entropy production) as the thermodynamic requirement for initiation and sustainability of single cell life (cell cycle). Furthermore, we also quantify curl flux originated from the input energy as the dynamical requirement for the emergence of a new stable phase (cell cycle). This can provide a new quantitative insight for the origin of single cell life. In fact, the curl flux originated from the energy input or nutrition supply determines the speed and guarantees the progression of the cell cycle. The speed of the cell cycle is a hallmark of cancer. We characterized the quality of the cell cycle by the coherence time and found it is supported by the flux and energy cost. We are also able to quantify the degree of time irreversibility by the cross correlation function forward and backward in time from the stochastic traces in the simulation or experiments, providing a way for the quantification of the time irreversibility and the flux. Through global sensitivity analysis upon landscape and flux, we can identify the key elements for controlling the cell cycle speed. This can help to design an effective strategy for drug discovery against cancer.

Atomic Oxygen Erosion of EVA-Stranded Soft-Goods on the ISS

NASA Technical Reports Server (NTRS)

Alred, John W.

2017-01-01

This paper presents the results of an analysis to calculate the cumulative, effective atomic oxygen (AO) flux impinging on short-duration EVA tethers used to secure panel NOD1/C2-02 and panel LAB/C2-03. Shadowing from the ram reduces the AO flux on much of the Node 1 panel. On the Lab panel, the tethers are essentially in the ram flux. Table 1 summarizes the results of the analysis for Node 1 and the US Lab panels.

40 CFR Table 3 to Subpart Rrr of... - Summary of Monitoring Requirements for New and Existing Affected Sources and Emission Units

Code of Federal Regulations, 2010 CFR

2010-07-01

.... Group 1 furnace without add-on controls Fluxing in sidewell furnace hearth Maintain flux addition... emission units with an add-on air pollution control device Emission capture and collection system Annual... specifications, or at least once every 6 months. Group 1 furnace, group 2 furnace, in-line fluxer, and scrap...

LH2 tank pressure control by thermodynamic vent system (TVS) at zero gravity

NASA Astrophysics Data System (ADS)

Wang, B.; Huang, Y. H.; Chen, Z. C.; Wu, J. Y.; Li, P.; Sun, P. J.

2017-02-01

Thermodynamic vent system (TVS) is employed for pressure control of propellant tanks at zero gravity. An analytical lumped parameter model is developed to predict pressure variation in an 18.09 m3 liquid hydrogen tank equipped with TVS. Mathematical simulations are carried out assuming tank is filled up to 75% volume (liquid mass equals to 945 kg) and is subjected to heat flux of 0.76 W/m2. Tank pressure controls at 165.5-172.4, 165.5-179.3 and 165.5-182.2 kPa are compared with reference to number of vent cycles, vent duration per cycle and loss of hydrogen. Analysis results indicate that the number of vent cycles significantly decreases from 62 to 21 when tank pressure control increases from 6.9 to 20.4 kPa. Also, duration of vent cycle increases from 63 to 152 and cycle duration decreases from 3920 to 3200 s. Further, the analysis result suggests that LH2 evaporation loss per day decreases from 0.17 to 0.14%. Based on the results of analysis, TVS is found effective in controlling the propellant tank pressure in zero gravity.

Ion-exchange and iontophoresis-controlled delivery of apomorphine.

PubMed

Malinovskaja, Kristina; Laaksonen, Timo; Kontturi, Kyösti; Hirvonen, Jouni

2013-04-01

The objective of this study was to test a drug delivery system that combines iontophoresis and cation-exchange fibers as drug matrices for the controlled transdermal delivery of antiparkinsonian drug apomorphine. Positively charged apomorphine was bound to the ion-exchange groups of the cation-exchange fibers until it was released by mobile counter-ions in the external solution. The release of the drug was controlled by modifying either the fiber type or the ionic composition of the external solution. Due to high affinity of apomorphine toward the ion-exchanger, a clear reduction in the in vitro transdermal fluxes from the fibers was observed compared to the respective fluxes from apomorphine solutions. Changes in the ionic composition of the donor formulations affected both the release and iontophoretic flux of the drug. Upon the application of higher co-ion concentrations or co-ions of higher valence in the donor formulation, the release from the fibers was enhanced, but the iontophoretic steady-state flux was decreased. Overall, the present study has demonstrated a promising approach using ion-exchange fibers for controlling the release and iontophoretic transdermal delivery of apomorphine. Copyright © 2012 Elsevier B.V. All rights reserved.

Adaptable and adaptive materials for light flux control

NASA Astrophysics Data System (ADS)

Sixou, Pierre; Magnaldo, A.; Nourry, J.; Laye, C.

1996-04-01

The purpose of this paper is to describe and examine properties of light flux control materials. Indeed, intelligent light flux control is necessary not only to improve everyday visual convenience but also in an economical point of view in order to reduce global home energetic cost. Several types of materials are good potential candidates for such functions: (1) The most well-known investigations concern inorganic materials such as tungsten or molybdenum oxides in which an electrochrom layer darkens when enriched in ions, and looses its color when impoverished. Unfortunately, at the moment, there is no convenient way to realize correct ions suppliers. Moreover, other drawbacks arise, such as poor reversibility, reactive interferences or a sensitivity of the material to its environment. These systems only need a low voltage level to work. But, their dynamic response, which is correlated to the component surface, is quite long. (2) At the present time, another attractive issue seems promising. More and more studies concern micro-composite liquid crystal films. For first, we shall remind their principles as well as their way of preparation. After having talked about their main advantages as intelligent materials, we shall discuss their control, their light flux adaptability, or their memory capabilities.

Observing temporal patterns of vertical flux through streambed sediments using time-series analysis of temperature records

NASA Astrophysics Data System (ADS)

Lautz, Laura K.

2012-09-01

SummaryRates of water exchange between surface water and groundwater (SW-GW) can be highly variable over time due to temporal changes in streambed hydraulic conductivity, storm events, and oscillation of stage due to natural and regulated river flow. There are few effective field methods available to make continuous measurements of SW-GW exchange rates with the temporal resolution required in many field applications. Here, controlled laboratory experiments were used to explore the accuracy of analytical solutions to the one-dimensional heat transport model for capturing temporal variability of flux through porous media from propagation of a periodic temperature signal to depth. Column experiments were used to generate one-dimensional flow of water and heat through saturated sand with a quasi-sinusoidal temperature oscillation at the upstream boundary. Measured flux rates through the column were compared to modeled flux rates derived using the computer model VFLUX and the amplitude ratio between filtered temperature records from two depths in the column. Imposed temporal changes in water flux through the column were designed to replicate observed patterns of flux in the field, derived using the same methodology. Field observations of temporal changes in flux were made over multiple days during a large-scale storm event and diurnally during seasonal baseflow recession. Temporal changes in flux that occur gradually over days, sub-daily, and instantaneously in time can be accurately measured using the one-dimensional heat transport model, although those temporal changes may be slightly smoothed over time. Filtering methods effectively isolate the time-variable amplitude and phase of the periodic temperature signal, effectively eliminating artificial temporal flux patterns otherwise imposed by perturbations of the temperature signal, which result from typical weather patterns during field investigations. Although previous studies have indicated that sub-cycle information from the heat transport model is not reliable, this laboratory experiment shows that the sub-cycle information is real and sub-cycle changes in flux can be observed using heat transport modeling. One-dimensional heat transport modeling provides an easy-to-implement, cost effective, reliable field tool for making continuous observations of SW-GW exchange through time, which may be particularly useful for monitoring exchange rates during storms and other conditions that create temporal change in hydraulic gradient across the streambed interface or change in streambed hydraulic conductivity.

Analysis of Evaporative Flux Over Irrigated and Unirrigated Pasture in the Wood River Basin

NASA Astrophysics Data System (ADS)

Cuenca, R. H.; Mahrt, L.; Hagimoto, Y.; Peterson, S.

2005-12-01

The reduction in evaporative fluxes due to withholding irrigation water for pasture in the Wood River subbasin of the Upper Klamath Basin was evaluated to estimate the potential benefit in subsequent streamflow. Two Campbell Scientific (CSI) Bowen ratio - energy balance systems were installed, one over a fully irrigated site and one over a non-irrigated site separated by approximately 11 km. The systems were comprised of an infrared gas analyzer for water vapor gradients, fine-wire thermocouples for temperature gradients, net radiometer and soil heat flux sensors. Additional micrometeorological sensors for precipitation, solar radiation, air temperature and relative humidity, wind speed and direction enabled calculation of a Penman-Monteith reference evapotranspiration. Both sites had uniform fetch conditions in excess of 1 km in the predominant upwind direction. Bowen ratio data were quality controlled using the Ohmura algorithm and energy balance components and fluxes computed every 20-min. Soil temperature and soil moisture profile sensors in six depth layers down to 80 cm were installed at the same sites and monitored every 15-min. High frequency (10-min) recording piezometers for water table monitoring were also installed. Both irrigated and unirrigated sites started the 2004 growing season with virtually the same soil moisture conditions due to over winter precipitation and melting of the snowpack. The evaporative flux rates from the two sites were nearly identical early in the season, and the repeatability of the diurnal fluxes at the two sites during this period is excellent. Towards the middle of the growing season, the evaporative flux rate at the irrigated site increased relative to the unirrigated site until at the end of the season there was approximately a 40 percent unbiased (dividing by the mean) difference between the two sites. The micrometeorological data indicate nearly uniform atmospheric conditions at the two sites due to turbulent mixing of the air mass within the valley. The persistence of the evaporative flux rate at the unirrigated site was probably due to contributions from the water table, as exhibited in the diurnal piezometer data. The difference in soil heat flux rates between the two sites after dry-down of the unirrigated site was relatively high and affected the difference in available energy (net radiation - soil heat flux). Initial application of LANDSAT data to integrate regional effects of unirrigated project lands over the basin is presented.

Gas Evolution Dynamics in Godunov-Type Schemes and Analysis of Numerical Shock Instability

NASA Technical Reports Server (NTRS)

Xu, Kun

1999-01-01

In this paper we are going to study the gas evolution dynamics of the exact and approximate Riemann solvers, e.g., the Flux Vector Splitting (FVS) and the Flux Difference Splitting (FDS) schemes. Since the FVS scheme and the Kinetic Flux Vector Splitting (KFVS) scheme have the same physical mechanism and similar flux function, based on the analysis of the discretized KFVS scheme the weakness and advantage of the FVS scheme are closely observed. The subtle dissipative mechanism of the Godunov method in the 2D case is also analyzed, and the physical reason for shock instability, i.e., carbuncle phenomena and odd-even decoupling, is presented.

Dynamic control of photosynthetic photon flux for lettuce production in CELSS

NASA Technical Reports Server (NTRS)

Chun, C.; Mitchell, C. A.

1996-01-01

A new dynamic control of photosynthetic photon flux (PPF) was tested using lettuce canopies growing in the Minitron II plant-growth/canopy gas-exchange system. Canopy photosynthetic rates (Pn) were measured in real time and fedback for further environment control. Pn can be manipulated by changing PPF, which is a good environmental parameter for dynamic control of crop production in a Controlled Ecological Life-Support Systems CELSS. Decision making that combines empirical mathematical models with rule sets developed from recent experimental data was tested. With comparable yield indices and potential for energy savings, dynamic control strategies will contribute greatly to the sustainability of space-deployed CELSS.

Ion fluxes and neurotransmitters signaling in neural development.

PubMed

Andäng, Michael; Lendahl, Urban

2008-06-01

The brain develops and functions in a complex ionic milieu, which is a prerequisite for neurotransmitter function and neuronal signaling. Neurotransmitters and ion fluxes are, however, important not only in neuronal signaling, but also in the control of neural differentiation, and in this review, we highlight the recent advances in our understanding of how the gamma-amino butyric acid (GABA) neurotransmitter and ion fluxes are relevant for cell cycle control and neural differentiation. Conversely, proteins previously associated with ion transport across membranes have been endowed with novel ion-independent functions, and we discuss this in the context of gap junctions in cell adhesion and of the neuron-specific K(+)-Cl(-) cotransporter KCC2 in dendritic spine development. Collectively, these findings provide a richer and more complex picture of when ion fluxes are needed in neural development and when they are not.

A Protein Turnover Signaling Motif Controls the Stimulus-Sensitivity of Stress Response Pathways

PubMed Central

Loriaux, Paul Michael; Hoffmann, Alexander

2013-01-01

Stimulus-induced perturbations from the steady state are a hallmark of signal transduction. In some signaling modules, the steady state is characterized by rapid synthesis and degradation of signaling proteins. Conspicuous among these are the p53 tumor suppressor, its negative regulator Mdm2, and the negative feedback regulator of NFκB, IκBα. We investigated the physiological importance of this turnover, or flux, using a computational method that allows flux to be systematically altered independently of the steady state protein abundances. Applying our method to a prototypical signaling module, we show that flux can precisely control the dynamic response to perturbation. Next, we applied our method to experimentally validated models of p53 and NFκB signaling. We find that high p53 flux is required for oscillations in response to a saturating dose of ionizing radiation (IR). In contrast, high flux of Mdm2 is not required for oscillations but preserves p53 sensitivity to sub-saturating doses of IR. In the NFκB system, degradation of NFκB-bound IκB by the IκB kinase (IKK) is required for activation in response to TNF, while high IKK-independent degradation prevents spurious activation in response to metabolic stress or low doses of TNF. Our work identifies flux pairs with opposing functional effects as a signaling motif that controls the stimulus-sensitivity of the p53 and NFκB stress-response pathways, and may constitute a general design principle in signaling pathways. PMID:23468615

Transformer-rectifier flux pump using inductive current transfer and thermally controlled Nb(3)Sn cryotrons.

PubMed

Atherton, D L; Davies, R

1979-10-01

Transformer-rectifier flux pumps using thermally switched Nb(3)Sn cryotrons are being investigated as a loss make-up device for the proposed isochorically operated (sealed) superconducting magnets for the Canadian Maglev vehicle. High currents (1000 A) were obtained in an experimental flux pump using inductive current transfer and operating at 2 Hz.

Impact of water use efficiency on eddy covariance flux partitioning using correlation structure analysis

USDA-ARS?s Scientific Manuscript database

Partitioned land surfaces fluxes (e.g. evaporation, transpiration, photosynthesis, and ecosystem respiration) are needed as input, calibration, and validation data for numerous hydrological and land surface models. However, one of the most commonly used techniques for measuring land surface fluxes,...

Genealogy profiling through strain improvement by using metabolic network analysis: metabolic flux genealogy of several generations of lysine-producing corynebacteria.

PubMed

Wittmann, Christoph; Heinzle, Elmar

2002-12-01

A comprehensive approach of metabolite balancing, (13)C tracer studies, gas chromatography-mass spectrometry, matrix-assisted laser desorption ionization-time of flight mass spectrometry, and isotopomer modeling was applied for comparative metabolic network analysis of a genealogy of five successive generations of lysine-producing Corynebacterium glutamicum. The five strains examined (C. glutamicum ATCC 13032, 13287, 21253, 21526, and 21543) were previously obtained by random mutagenesis and selection. Throughout the genealogy, the lysine yield in batch cultures increased markedly from 1.2 to 24.9% relative to the glucose uptake flux. Strain optimization was accompanied by significant changes in intracellular flux distributions. The relative pentose phosphate pathway (PPP) flux successively increased, clearly corresponding to the product yield. Moreover, the anaplerotic net flux increased almost twofold as a consequence of concerted regulation of C(3) carboxylation and C(4) decarboxylation fluxes to cover the increased demand for lysine formation; thus, the overall increase was a consequence of concerted regulation of C(3) carboxylation and C(4) decarboxylation fluxes. The relative flux through isocitrate dehydrogenase dropped from 82.7% in the wild type to 59.9% in the lysine-producing mutants. In contrast to the NADPH demand, which increased from 109 to 172% due to the increasing lysine yield, the overall NADPH supply remained constant between 185 and 196%, resulting in a decrease in the apparent NADPH excess through strain optimization. Extrapolated to industrial lysine producers, the NADPH supply might become a limiting factor. The relative contributions of PPP and the tricarboxylic acid cycle to NADPH generation changed markedly, indicating that C. glutamicum is able to maintain a constant supply of NADPH under completely different flux conditions. Statistical analysis by a Monte Carlo approach revealed high precision for the estimated fluxes, underlining the fact that the observed differences were clearly strain specific.

Genealogy Profiling through Strain Improvement by Using Metabolic Network Analysis: Metabolic Flux Genealogy of Several Generations of Lysine-Producing Corynebacteria

PubMed Central

Wittmann, Christoph; Heinzle, Elmar

2002-01-01

A comprehensive approach of metabolite balancing, 13C tracer studies, gas chromatography-mass spectrometry, matrix-assisted laser desorption ionization-time of flight mass spectrometry, and isotopomer modeling was applied for comparative metabolic network analysis of a genealogy of five successive generations of lysine-producing Corynebacterium glutamicum. The five strains examined (C. glutamicum ATCC 13032, 13287, 21253, 21526, and 21543) were previously obtained by random mutagenesis and selection. Throughout the genealogy, the lysine yield in batch cultures increased markedly from 1.2 to 24.9% relative to the glucose uptake flux. Strain optimization was accompanied by significant changes in intracellular flux distributions. The relative pentose phosphate pathway (PPP) flux successively increased, clearly corresponding to the product yield. Moreover, the anaplerotic net flux increased almost twofold as a consequence of concerted regulation of C3 carboxylation and C4 decarboxylation fluxes to cover the increased demand for lysine formation; thus, the overall increase was a consequence of concerted regulation of C3 carboxylation and C4 decarboxylation fluxes. The relative flux through isocitrate dehydrogenase dropped from 82.7% in the wild type to 59.9% in the lysine-producing mutants. In contrast to the NADPH demand, which increased from 109 to 172% due to the increasing lysine yield, the overall NADPH supply remained constant between 185 and 196%, resulting in a decrease in the apparent NADPH excess through strain optimization. Extrapolated to industrial lysine producers, the NADPH supply might become a limiting factor. The relative contributions of PPP and the tricarboxylic acid cycle to NADPH generation changed markedly, indicating that C. glutamicum is able to maintain a constant supply of NADPH under completely different flux conditions. Statistical analysis by a Monte Carlo approach revealed high precision for the estimated fluxes, underlining the fact that the observed differences were clearly strain specific. PMID:12450803

Short-term nitrogen additions can shift a coastal wetland from a sink to a source of N2O

USGS Publications Warehouse

Moseman-Valtierra, Serena; Gonzalez, Rosalinda; Kroeger, Kevin D.; Tang, Jianwu; Chao, Wei Chun; Crusius, John; Bratton, John F.; Green, Adrian; Shelton, James

2011-01-01

Coastal salt marshes sequester carbon at high rates relative to other ecosystems and emit relatively little methane particularly compared to freshwater wetlands. However, fluxes of all major greenhouse gases (N2O, CH4, and CO2) need to be quantified for accurate assessment of the climatic roles of these ecosystems. Anthropogenic nitrogen inputs (via run-off, atmospheric deposition, and wastewater) impact coastal marshes. To test the hypothesis that a pulse of nitrogen loading may increase greenhouse gas emissions from salt marsh sediments, we compared N2O, CH4 and respiratory CO2fluxes from nitrate-enriched plots in a Spartina patens marsh (receiving single additions of NaNO3 equivalent to 1.4 g N m−2) to those from control plots (receiving only artificial seawater solutions) in three short-term experiments (July 2009, April 2010, and June 2010). In July 2009, we also compared N2O and CH4 fluxes in both opaque and transparent chambers to test the influence of light on gas flux measurements. Background fluxes of N2O in July 2009 averaged −33 μmol N2O m−2 day−1. However, within 1 h of nutrient additions, N2O fluxes were significantly greater in plots receiving nitrate additions relative to controls in July 2009. Respiratory rates and CH4 fluxes were not significantly affected. N2O fluxes were significantly higher in dark than in transparent chambers, averaging 108 and 42 μmol N2O m−2 day−1 respectively. After 2 days, when nutrient concentrations returned to background levels, none of the greenhouse gas fluxes differed from controls. In April 2010, N2O and CH4 fluxes were not significantly affected by nitrate, possibly due to higher nitrogen demands by growing S. patens plants, but in June 2010 trends of higher N2O fluxes were again found among nitrate-enriched plots, indicating that responses to nutrient pulses may be strongest during the summer. In terms of carbon equivalents, the highest average N2O and CH4 fluxes observed, exceeded half the magnitude of typical daily net carbon sequestration rates by salt marshes. Thus, anthropogenic additions of nitrate to coasts can substantially alter N2O fluxes from marshes, although substantial temporal variation in these fluxes was observed. To better assess the climatic roles of salt marshes, greenhouse gas emissions need to be studied in the context of chronic nitrogen loads that impact many coastal ecosystems.

Control of the photosynthetic electron transport by PQ diffusion microdomains in thylakoids of higher plants.

PubMed

Kirchhoff, H; Horstmann, S; Weis, E

2000-07-20

We investigate the role of plastoquinone (PQ) diffusion in the control of the photosynthetic electron transport. A control analysis reveals an unexpected flux control of the whole chain electron transport by photosystem (PS) II. The contribution of PSII to the flux control of whole chain electron transport was high in stacked thylakoids (control coefficient, CJ(PSII) =0.85), but decreased after destacking (CJ(PSII)=0.25). From an 'electron storage' experiment, we conclude that in stacked thylakoids only about 50 to 60% of photoreducable PQ is involved in the light-saturated linear electron transport. No redox equilibration throughout the membrane between fixed redox groups at PSII and cytochrome (cyt) bf complexes, and the diffusable carrier PQ is achieved. The data support the PQ diffusion microdomain concept by Lavergne et al. [J. Lavergne, J.-P. Bouchaud, P. Joliot, Biochim. Biophys. Acta 1101 (1992) 13-22], but we come to different conclusions about size, structure and size distribution of domains. From an analysis of cyt b6 reduction, as a function of PSII inhibition, we conclude that in stacked thylakoids about 70% of PSII is located in small domains, where only 1 to 2 PSII share a local pool of a few PQ molecules. Thirty percent of PSII is located in larger domains. No small domains were found in destacked thylakoids. We present a structural model assuming a hierarchy of specific, strong and weak interactions between PSII core, light harvesting complexes (LHC) II and cyt bf. Peripheral LHCII's may serve to connect PSII-LHCII supercomplexes to a flexible protein network, by which small closed lipid diffusion compartments are formed. Within each domain, PQ moves rapidly and shuttles electrons between PSII and cyt bf complexes in the close vicinity. At the same time, long range diffusion is slow. We conclude, that in high light, cyt bfcomplexes located in distant stromal lamellae (20 to 30%) are not involved in the linear electron transport.

Dynamic elementary mode modelling of non-steady state flux data.

PubMed

Folch-Fortuny, Abel; Teusink, Bas; Hoefsloot, Huub C J; Smilde, Age K; Ferrer, Alberto

2018-06-18

A novel framework is proposed to analyse metabolic fluxes in non-steady state conditions, based on the new concept of dynamic elementary mode (dynEM): an elementary mode activated partially depending on the time point of the experiment. Two methods are introduced here: dynamic elementary mode analysis (dynEMA) and dynamic elementary mode regression discriminant analysis (dynEMR-DA). The former is an extension of the recently proposed principal elementary mode analysis (PEMA) method from steady state to non-steady state scenarios. The latter is a discriminant model that permits to identify which dynEMs behave strongly different depending on the experimental conditions. Two case studies of Saccharomyces cerevisiae, with fluxes derived from simulated and real concentration data sets, are presented to highlight the benefits of this dynamic modelling. This methodology permits to analyse metabolic fluxes at early stages with the aim of i) creating reduced dynamic models of flux data, ii) combining many experiments in a single biologically meaningful model, and iii) identifying the metabolic pathways that drive the organism from one state to another when changing the environmental conditions.