MEMORY FOR POETRY: MORE THAN MEANING?

PubMed Central

Atchley, Rachel M.; Hare, Mary L.

2015-01-01

The assumption has become that memory for words’ sound patterns, or form, is rapidly lost in comparison to content. Memory for form is also assumed to be verbatim rather than schematic. Oral story-telling traditions suggest otherwise. The present experiment investigated if form can be remembered schematically in spoken poetry, a context in which form is important. We also explored if sleep could help preserve memory for form. We tested whether alliterative sound patterns could cue memory for poetry lines both immediately and after a delay of 12 hours that did or did not include sleep. Twelve alliterative poetry lines were modified into same alliteration, different alliteration, and no alliteration paraphrases. We predicted that memory for original poetry lines would be less accurate after 12 hours, same alliteration paraphrases would be falsely recognized as originals more often after 12 hours, and that the no-sleep group would make more errors. Different alliteration and no alliteration paraphrases were not expected to share this effect due to schematically different sound patterns. Our data support these hypotheses and provide evidence that memory for form is schematic in nature, retained in contexts in which form matters, and that sleep may help preserve memory for sound patterns. PMID:26401226

Criteria for predicting the formation of single-phase high-entropy alloys

DOE PAGES

Troparevsky, M Claudia; Morris, James R..; Kent, Paul R.; ...

2015-03-15

High entropy alloys constitute a new class of materials whose very existence poses fundamental questions. Originally thought to be stabilized by the large entropy of mixing, these alloys have attracted attention due to their potential applications, yet no model capable of robustly predicting which combinations of elements will form a single-phase currently exists. Here we propose a model that, through the use of high-throughput computation of the enthalpies of formation of binary compounds, is able to confirm all known high-entropy alloys while rejecting similar alloys that are known to form multiple phases. Despite the increasing entropy, our model predicts thatmore » the number of potential single-phase multicomponent alloys decreases with an increasing number of components: out of more than two million possible 7-component alloys considered, fewer than twenty single-phase alloys are likely.« less

Improved partition equilibrium model for predicting analyte response in electrospray ionization mass spectrometry.

PubMed

Du, Lihong; White, Robert L

2009-02-01

A previously proposed partition equilibrium model for quantitative prediction of analyte response in electrospray ionization mass spectrometry is modified to yield an improved linear relationship. Analyte mass spectrometer response is modeled by a competition mechanism between analyte and background electrolytes that is based on partition equilibrium considerations. The correlation between analyte response and solution composition is described by the linear model over a wide concentration range and the improved model is shown to be valid for a wide range of experimental conditions. The behavior of an analyte in a salt solution, which could not be explained by the original model, is correctly predicted. The ion suppression effects of 16:0 lysophosphatidylcholine (LPC) on analyte signals are attributed to a combination of competition for excess charge and reduction of total charge due to surface tension effects. In contrast to the complicated mathematical forms that comprise the original model, the simplified model described here can more easily be employed to predict analyte mass spectrometer responses for solutions containing multiple components. Copyright (c) 2008 John Wiley & Sons, Ltd.

Info/information theory: speakers choose shorter words in predictive contexts.

PubMed

Mahowald, Kyle; Fedorenko, Evelina; Piantadosi, Steven T; Gibson, Edward

2013-02-01

A major open question in natural language research is the role of communicative efficiency in the origin and on-line processing of language structures. Here, we use word pairs like chimp/chimpanzee, which differ in length but have nearly identical meanings, to investigate the communicative properties of lexical systems and the communicative pressures on language users.If language is designed to be information-theoretically optimal, then shorter words should convey less information than their longer counterparts, when controlling for meaning. Consistent with this prediction, a corpus analysis revealed that the short form of our meaning-matched pairs occurs in more predictive contexts than the longer form. Second, a behavioral study showed that language users choose the short form more often in predictive contexts, suggesting that tendencies to be information-theoretically efficient manifest in explicit behavioral choices. Our findings, which demonstrate the prominent role of communicative efficiency in the structure of the lexicon, complement and extend the results of Piantadosi, Tily, and Gibson (2011), who showed that word length is better correlated with Shannon information content than with frequency. Crucially, we show that this effect arises at least in part from active speaker choice. Copyright © 2012 Elsevier B.V. All rights reserved.

Understanding Human Original Actions Directed at Real-World Goals: The Role of the Lateral Prefrontal Cortex

PubMed Central

Sitnikova, Tatiana; Rosen, Bruce R.; Lord, Louis-David; West, W. Caroline

2014-01-01

Adaptive, original actions, which can succeed in multiple contextual situations, require understanding of what is relevant to a goal. Recognizing what is relevant may also help in predicting kinematics of observed, original actions. During action observation, comparisons between sensory input and expected action kinematics have been argued critical to accurate goal inference. Experimental studies with laboratory tasks, both in humans and nonhuman primates, demonstrated that the lateral prefrontal cortex (LPFC) can learn, hierarchically organize, and use goal-relevant information. To determine whether this LPFC capacity is generalizable to real-world cognition, we recorded functional magnetic resonance imaging (fMRI) data in the human brain during comprehension of original and usual object-directed actions embedded in video-depictions of real-life behaviors. We hypothesized that LPFC will contribute to forming goal-relevant representations necessary for kinematic predictions of original actions. Additionally, resting-state fMRI was employed to examine functional connectivity between the brain regions delineated in the video fMRI experiment. According to behavioral data, original videos could be understood by identifying elements relevant to real-life goals at different levels of abstraction. Patterns of enhanced activity in four regions in the left LPFC, evoked by original, relative to usual, video scenes, were consistent with previous neuroimaging findings on representing abstract and concrete stimuli dimensions relevant to laboratory goals. In the anterior left LPFC, the activity increased selectively when representations of broad classes of objects and actions, which could achieve the perceived overall behavioral goal, were likely to bias kinematic predictions of original actions. In contrast, in the more posterior regions, the activity increased even when concrete properties of the target object were more likely to bias the kinematic prediction. Functional connectivity was observed between contiguous regions along the rostro-caudal LPFC axis, but not between the regions that were not immediately adjacent. These findings generalize the representational hierarchy account of LPFC function to diverse core principles that can govern both production and comprehension of flexible real-life behavior. PMID:25224997

G4 motifs affect origin positioning and efficiency in two vertebrate replicators

PubMed Central

Valton, Anne-Laure; Hassan-Zadeh, Vahideh; Lema, Ingrid; Boggetto, Nicole; Alberti, Patrizia; Saintomé, Carole; Riou, Jean-François; Prioleau, Marie-Noëlle

2014-01-01

DNA replication ensures the accurate duplication of the genome at each cell cycle. It begins at specific sites called replication origins. Genome-wide studies in vertebrates have recently identified a consensus G-rich motif potentially able to form G-quadruplexes (G4) in most replication origins. However, there is no experimental evidence to demonstrate that G4 are actually required for replication initiation. We show here, with two model origins, that G4 motifs are required for replication initiation. Two G4 motifs cooperate in one of our model origins. The other contains only one critical G4, and its orientation determines the precise position of the replication start site. Point mutations affecting the stability of this G4 in vitro also impair origin function. Finally, this G4 is not sufficient for origin activity and must cooperate with a 200-bp cis-regulatory element. In conclusion, our study strongly supports the predicted essential role of G4 in replication initiation. PMID:24521668

Levitation and propulsion of a Mie-resonance particle by a surface plasmon.

PubMed

Maslov, A V

2017-09-01

It is predicted that the optical force induced by a surface plasmon can form a stable equilibrium position for a resonant particle at a finite distance from the surface. The levitated particle can be efficiently propelled along the surface without touching it. The levitation originates from the strong interaction of the particle with the surface.

Subsumed complexity: abiogenesis as a by-product of complex energy transduction.

PubMed

Adam, Z R; Zubarev, D; Aono, M; Cleaves, H James

2017-12-28

The origins of life bring into stark relief the inadequacy of our current synthesis of thermodynamic, chemical, physical and information theory to predict the conditions under which complex, living states of organic matter can arise. Origins research has traditionally proceeded under an array of implicit or explicit guiding principles in lieu of a universal formalism for abiogenesis. Within the framework of a new guiding principle for prebiotic chemistry called subsumed complexity , organic compounds are viewed as by-products of energy transduction phenomena at different scales (subatomic, atomic, molecular and polymeric) that retain energy in the form of bonds that inhibit energy from reaching the ground state. There is evidence for an emergent level of complexity that is overlooked in most conceptualizations of abiogenesis that arises from populations of compounds formed from atomic energy input. We posit that different forms of energy input can exhibit different degrees of dissipation complexity within an identical chemical medium. By extension, the maximum capacity for organic chemical complexification across molecular and macromolecular scales subsumes, rather than emerges from, the underlying complexity of energy transduction processes that drive their production and modification.This article is part of the themed issue 'Reconceptualizing the origins of life'. © 2017 The Author(s).

Subsumed complexity: abiogenesis as a by-product of complex energy transduction

NASA Astrophysics Data System (ADS)

Adam, Z. R.; Zubarev, D.; Aono, M.; Cleaves, H. James

2017-11-01

The origins of life bring into stark relief the inadequacy of our current synthesis of thermodynamic, chemical, physical and information theory to predict the conditions under which complex, living states of organic matter can arise. Origins research has traditionally proceeded under an array of implicit or explicit guiding principles in lieu of a universal formalism for abiogenesis. Within the framework of a new guiding principle for prebiotic chemistry called subsumed complexity, organic compounds are viewed as by-products of energy transduction phenomena at different scales (subatomic, atomic, molecular and polymeric) that retain energy in the form of bonds that inhibit energy from reaching the ground state. There is evidence for an emergent level of complexity that is overlooked in most conceptualizations of abiogenesis that arises from populations of compounds formed from atomic energy input. We posit that different forms of energy input can exhibit different degrees of dissipation complexity within an identical chemical medium. By extension, the maximum capacity for organic chemical complexification across molecular and macromolecular scales subsumes, rather than emerges from, the underlying complexity of energy transduction processes that drive their production and modification. This article is part of the themed issue 'Reconceptualizing the origins of life'.

ComplexContact: a web server for inter-protein contact prediction using deep learning.

PubMed

Zeng, Hong; Wang, Sheng; Zhou, Tianming; Zhao, Feifeng; Li, Xiufeng; Wu, Qing; Xu, Jinbo

2018-05-22

ComplexContact (http://raptorx2.uchicago.edu/ComplexContact/) is a web server for sequence-based interfacial residue-residue contact prediction of a putative protein complex. Interfacial residue-residue contacts are critical for understanding how proteins form complex and interact at residue level. When receiving a pair of protein sequences, ComplexContact first searches for their sequence homologs and builds two paired multiple sequence alignments (MSA), then it applies co-evolution analysis and a CASP-winning deep learning (DL) method to predict interfacial contacts from paired MSAs and visualizes the prediction as an image. The DL method was originally developed for intra-protein contact prediction and performed the best in CASP12. Our large-scale experimental test further shows that ComplexContact greatly outperforms pure co-evolution methods for inter-protein contact prediction, regardless of the species.

The IUPAC aqueous and non-aqueous experimental pKa data repositories of organic acids and bases.

PubMed

Slater, Anthony Michael

2014-10-01

Accurate and well-curated experimental pKa data of organic acids and bases in both aqueous and non-aqueous media are invaluable in many areas of chemical research, including pharmaceutical, agrochemical, specialty chemical and property prediction research. In pharmaceutical research, pKa data are relevant in ligand design, protein binding, absorption, distribution, metabolism, elimination as well as solubility and dissolution rate. The pKa data compilations of the International Union of Pure and Applied Chemistry, originally in book form, have been carefully converted into computer-readable form, with value being added in the process, in the form of ionisation assignments and tautomer enumeration. These compilations offer a broad range of chemistry in both aqueous and non-aqueous media and the experimental conditions and original reference for all pKa determinations are supplied. The statistics for these compilations are presented and the utility of the computer-readable form of these compilations is examined in comparison to other pKa compilations. Finally, information is provided about how to access these databases.

The IUPAC aqueous and non-aqueous experimental pKa data repositories of organic acids and bases

NASA Astrophysics Data System (ADS)

Slater, Anthony Michael

2014-10-01

Accurate and well-curated experimental pKa data of organic acids and bases in both aqueous and non-aqueous media are invaluable in many areas of chemical research, including pharmaceutical, agrochemical, specialty chemical and property prediction research. In pharmaceutical research, pKa data are relevant in ligand design, protein binding, absorption, distribution, metabolism, elimination as well as solubility and dissolution rate. The pKa data compilations of the International Union of Pure and Applied Chemistry, originally in book form, have been carefully converted into computer-readable form, with value being added in the process, in the form of ionisation assignments and tautomer enumeration. These compilations offer a broad range of chemistry in both aqueous and non-aqueous media and the experimental conditions and original reference for all pKa determinations are supplied. The statistics for these compilations are presented and the utility of the computer-readable form of these compilations is examined in comparison to other pKa compilations. Finally, information is provided about how to access these databases.

On the origin of life in the zinc world. 2. Validation of the hypothesis on the photosynthesizing zinc sulfide edifices as cradles of life on Earth.

PubMed

Mulkidjanian, Armen Y; Galperin, Michael Y

2009-08-24

The accompanying article (A.Y. Mulkidjanian, Biology Direct 4:26) puts forward a detailed hypothesis on the role of zinc sulfide (ZnS) in the origin of life on Earth. The hypothesis suggests that life emerged within compartmentalized, photosynthesizing ZnS formations of hydrothermal origin (the Zn world), assembled in sub-aerial settings on the surface of the primeval Earth. If life started within photosynthesizing ZnS compartments, it should have been able to evolve under the conditions of elevated levels of Zn2+ ions, byproducts of the ZnS-mediated photosynthesis. Therefore, the Zn world hypothesis leads to a set of testable predictions regarding the specific roles of Zn2+ ions in modern organisms, particularly in RNA and protein structures related to the procession of RNA and the "evolutionarily old" cellular functions. We checked these predictions using publicly available data and obtained evidence suggesting that the development of the primeval life forms up to the stage of the Last Universal Common Ancestor proceeded in zinc-rich settings. Testing of the hypothesis has revealed the possible supportive role of manganese sulfide in the primeval photosynthesis. In addition, we demonstrate the explanatory power of the Zn world concept by elucidating several points that so far remained without acceptable rationalization. In particular, this concept implies a new scenario for the separation of Bacteria and Archaea and the origin of Eukarya. The ability of the Zn world hypothesis to generate non-trivial veritable predictions and explain previously obscure items gives credence to its key postulate that the development of the first life forms started within zinc-rich formations of hydrothermal origin and was driven by solar UV irradiation. This concept implies that the geochemical conditions conducive to the origin of life may have persisted only as long as the atmospheric CO2 pressure remained above ca. 10 bar. This work envisions the first Earth biotopes as photosynthesizing and habitable areas of porous ZnS and MnS precipitates around primeval hot springs. Further work will be needed to provide details on the life within these communities and to elucidate the primordial (bio)chemical reactions. This article was reviewed by Arcady Mushegian, Eugene Koonin, and Patrick Forterre. For the full reviews, please go to the Reviewers' reports section.

On the origin of life in the Zinc world. 2. Validation of the hypothesis on the photosynthesizing zinc sulfide edifices as cradles of life on Earth

PubMed Central

Mulkidjanian, Armen Y; Galperin, Michael Y

2009-01-01

Background The accompanying article (A.Y. Mulkidjanian, Biology Direct 4:26) puts forward a detailed hypothesis on the role of zinc sulfide (ZnS) in the origin of life on Earth. The hypothesis suggests that life emerged within compartmentalized, photosynthesizing ZnS formations of hydrothermal origin (the Zn world), assembled in sub-aerial settings on the surface of the primeval Earth. Results If life started within photosynthesizing ZnS compartments, it should have been able to evolve under the conditions of elevated levels of Zn2+ ions, byproducts of the ZnS-mediated photosynthesis. Therefore, the Zn world hypothesis leads to a set of testable predictions regarding the specific roles of Zn2+ ions in modern organisms, particularly in RNA and protein structures related to the procession of RNA and the "evolutionarily old" cellular functions. We checked these predictions using publicly available data and obtained evidence suggesting that the development of the primeval life forms up to the stage of the Last Universal Common Ancestor proceeded in zinc-rich settings. Testing of the hypothesis has revealed the possible supportive role of manganese sulfide in the primeval photosynthesis. In addition, we demonstrate the explanatory power of the Zn world concept by elucidating several points that so far remained without acceptable rationalization. In particular, this concept implies a new scenario for the separation of Bacteria and Archaea and the origin of Eukarya. Conclusion The ability of the Zn world hypothesis to generate non-trivial veritable predictions and explain previously obscure items gives credence to its key postulate that the development of the first life forms started within zinc-rich formations of hydrothermal origin and was driven by solar UV irradiation. This concept implies that the geochemical conditions conducive to the origin of life may have persisted only as long as the atmospheric CO2 pressure remained above ca. 10 bar. This work envisions the first Earth biotopes as photosynthesizing and habitable areas of porous ZnS and MnS precipitates around primeval hot springs. Further work will be needed to provide details on the life within these communities and to elucidate the primordial (bio)chemical reactions. Reviewers This article was reviewed by Arcady Mushegian, Eugene Koonin, and Patrick Forterre. For the full reviews, please go to the Reviewers' reports section. PMID:19703275

Elastic amplitudes studied with the LHC measurements at 7 and 8 TeV

NASA Astrophysics Data System (ADS)

Kohara, A. K.; Ferreira, E.; Kodama, T.; Rangel, M.

2017-12-01

Recent measurements of the differential cross sections in the forward region of pp elastic scattering at 7 and 8 TeV show the precise form of the t dependence. We present a detailed analysis of these measurements including the structures of the real and imaginary parts of the scattering amplitude. A good description is achieved, confirming in all experiments the existence of a zero in the real part in the forward region close to the origin, in agreement with the prediction of a theorem by Martin, with an important role in the observed form of dσ /dt. A universal value for the position of this zero and regularity in other features of the amplitudes are found, leading to quantitative predictions for the forward elastic scattering at 13 TeV.

Animal cognition: an insect's sense of time?

PubMed

Skorupski, Peter; Chittka, Lars

2006-10-10

For Immanuel Kant, time was the very form of the inner sense, the bedrock of our consciousness and also the origin of arithmetic ability. New research on bumblebees has shown that even an invertebrate with a brain the size of a pinhead can actively sense the passage of elapsed time, allowing it to predict when certain salient events will occur in the future.

The Influence of Self-Efficacies on Readers' Intention to Use E-Reading Devices: An Empirical Study

ERIC Educational Resources Information Center

Tsai, Bor-Yuan; Yen, Jung-Nan

2014-01-01

E-books and e-Reading Devices (E-RDs) markets have been enlarged due to the rapid progress of digital technologies. What are the possible factors to increase readers' willingness to use electronic devices? To improve the predictive value of the original TAM model, this study incorporates three additional constructs to form e-Reading Device…

Light aircraft lift, drag, and moment prediction: A review and analysis

NASA Technical Reports Server (NTRS)

Smetana, F. O.; Summey, D. C.; Smith, N. S.; Carden, R. K.

1975-01-01

The historical development of analytical methods for predicting the lift, drag, and pitching moment of complete light aircraft configurations in cruising flight is reviewed. Theoretical methods, based in part on techniques described in the literature and in part on original work, are developed. These methods form the basis for understanding the computer programs given to: (1) compute the lift, drag, and moment of conventional airfoils, (2) extend these two-dimensional characteristics to three dimensions for moderate-to-high aspect ratio unswept wings, (3) plot complete configurations, (4) convert the fuselage geometric data to the correct input format, (5) compute the fuselage lift and drag, (6) compute the lift and moment of symmetrical airfoils to M = 1.0 by a simplified semi-empirical procedure, and (7) compute, in closed form, the pressure distribution over a prolate spheroid at alpha = 0. Comparisons of the predictions with experiment indicate excellent lift and drag agreement for conventional airfoils and wings. Limited comparisons of body-alone drag characteristics yield reasonable agreement. Also included are discussions for interference effects and techniques for summing the results above to obtain predictions for complete configurations.

Beta Decay and the Origins of Biological Chirality

NASA Astrophysics Data System (ADS)

van House, James Christopher

1984-06-01

The amino acids and sugars on which terrestrial life is based show maximal optical activity, that is, with rare exceptions, they are composed of D sugars in RNA and DNA and L-amino acids in proteins. Recent quantitative theoretical calculations suggest that the origin of this asymmetry can be causally explained by asymmetric radiolysis of initially racemic mixtures of D and L molecules by the longitudinally polarized electrons emitted in parity violating nuclear (beta) decay. These same theories predict an asymmetry in the rate of orthopositronium formation, Ap(,s), when low energy positron beams with a net helicity form positronium in optically active molecules, and quantitatively connect Ap(,s) to asymmetric radiolysis. This thesis presents the results of a measurement of Ap(,s) in several D, L, and DL amino acids using a polarized low energy positron beam. Limits of Ap(,s) < 3 x 10(' -4) were set on the amino acids leucine, selenocystine, and thyroxine, sufficient to exclude part of the predicted range of Ap(,s) in the last two molecules. These experimental limits improve previous limits on asymmetric radiolysis by a factor of 10('6). A quantitative discussion of the connection between the above limits and the origin of optical activity in living organisms is presented. Details of the development of the high intensity, highly polarized slow positron beam used in these measurements and of the first use of remoderation to form a slow positron beam and provide a timing signal for the beam are presented in the Appendices.

Large-scale replication study reveals a limit on probabilistic prediction in language comprehension.

PubMed

Nieuwland, Mante S; Politzer-Ahles, Stephen; Heyselaar, Evelien; Segaert, Katrien; Darley, Emily; Kazanina, Nina; Von Grebmer Zu Wolfsthurn, Sarah; Bartolozzi, Federica; Kogan, Vita; Ito, Aine; Mézière, Diane; Barr, Dale J; Rousselet, Guillaume A; Ferguson, Heather J; Busch-Moreno, Simon; Fu, Xiao; Tuomainen, Jyrki; Kulakova, Eugenia; Husband, E Matthew; Donaldson, David I; Kohút, Zdenko; Rueschemeyer, Shirley-Ann; Huettig, Falk

2018-04-03

Do people routinely pre-activate the meaning and even the phonological form of upcoming words? The most acclaimed evidence for phonological prediction comes from a 2005 Nature Neuroscience publication by DeLong, Urbach and Kutas, who observed a graded modulation of electrical brain potentials (N400) to nouns and preceding articles by the probability that people use a word to continue the sentence fragment ('cloze'). In our direct replication study spanning 9 laboratories ( N =334), pre-registered replication-analyses and exploratory Bayes factor analyses successfully replicated the noun-results but, crucially, not the article-results. Pre-registered single-trial analyses also yielded a statistically significant effect for the nouns but not the articles. Exploratory Bayesian single-trial analyses showed that the article-effect may be non-zero but is likely far smaller than originally reported and too small to observe without very large sample sizes. Our results do not support the view that readers routinely pre-activate the phonological form of predictable words. © 2018, Nieuwland et al.

Large-scale replication study reveals a limit on probabilistic prediction in language comprehension

PubMed Central

Politzer-Ahles, Stephen; Heyselaar, Evelien; Segaert, Katrien; Darley, Emily; Kazanina, Nina; Von Grebmer Zu Wolfsthurn, Sarah; Bartolozzi, Federica; Kogan, Vita; Ito, Aine; Mézière, Diane; Barr, Dale J; Rousselet, Guillaume A; Ferguson, Heather J; Busch-Moreno, Simon; Fu, Xiao; Tuomainen, Jyrki; Kulakova, Eugenia; Husband, E Matthew; Donaldson, David I; Kohút, Zdenko; Rueschemeyer, Shirley-Ann; Huettig, Falk

2018-01-01

Do people routinely pre-activate the meaning and even the phonological form of upcoming words? The most acclaimed evidence for phonological prediction comes from a 2005 Nature Neuroscience publication by DeLong, Urbach and Kutas, who observed a graded modulation of electrical brain potentials (N400) to nouns and preceding articles by the probability that people use a word to continue the sentence fragment (‘cloze’). In our direct replication study spanning 9 laboratories (N=334), pre-registered replication-analyses and exploratory Bayes factor analyses successfully replicated the noun-results but, crucially, not the article-results. Pre-registered single-trial analyses also yielded a statistically significant effect for the nouns but not the articles. Exploratory Bayesian single-trial analyses showed that the article-effect may be non-zero but is likely far smaller than originally reported and too small to observe without very large sample sizes. Our results do not support the view that readers routinely pre-activate the phonological form of predictable words. PMID:29631695

[Thermodynamics of the origin of life, evolution and aging].

PubMed

Gladyshev, G P

2014-01-01

Briefly discusses the history of the search of thermodynamic approach to explain the origin of life, evolution and aging of living beings. The origin of life is the result of requirement by the quasi-equilibrium hierarchical thermodynamics, in particular, the supramolecular thermodynamics. The evolution and aging of living beings is accompanied with changes of chemical and supramolecular compositions of living bodies, as well as with changes in the composition and structure of all hierarchies of the living world. The thermodynamic principle of substance stability predicts the existence of a single genetic code in our universe. The thermodynamic theory optimizes physiology and medicine and recommends antiaging diets and medicines. Hierarchical thermodynamics forms the design diversity of culture and art. The thermodynamic theory of origin of life, evolution and aging is the development of Clausius-Gibbs thermodynamics. Hierarchical thermodynamics is the mirror of Darwin-Wallace's-theory.

The Third Ambient Aspirin Polymorph

DOE Office of Scientific and Technical Information (OSTI.GOV)

Shtukenberg, Alexander G.; Hu, Chunhua T.; Zhu, Qiang

Polymorphism in aspirin (acetylsalicylic acid), one of the most widely consumed medications, was equivocal until the structure of a second polymorph II, similar in structure to the original form I, was reported in 2005. Here, the third ambient polymorph of aspirin is described. Lastly, it was crystallized from the melt and its structure was determined using a combination of X-ray powder diffraction analysis and crystal structure prediction algorithms.

The Third Ambient Aspirin Polymorph

DOE PAGES

Shtukenberg, Alexander G.; Hu, Chunhua T.; Zhu, Qiang; ...

2017-05-17

Polymorphism in aspirin (acetylsalicylic acid), one of the most widely consumed medications, was equivocal until the structure of a second polymorph II, similar in structure to the original form I, was reported in 2005. Here, the third ambient polymorph of aspirin is described. Lastly, it was crystallized from the melt and its structure was determined using a combination of X-ray powder diffraction analysis and crystal structure prediction algorithms.

Morphostructural Analysis and Seabed Shelf Typing

NASA Astrophysics Data System (ADS)

Nikiforov, S. L.; Sorokhtin, N. O.; Koshel', S. M.; Lobkovsky, L. I.

2018-03-01

Analysis of the morphometric characteristics from a study of the Barents Sea seabed has shown that the existing troughs are consistent with geodynamic conclusions, allowing morphological typing into structural slopes and reconstruction of their origin. Thus, the Norwegian-Mezenskaya rift system and Svyataya Anna and Victoria troughs were formed due to stretching of the lithosphere. The South Barents and Medvezinsko- Edzinskaya depressions formed at the generation stage of lithospheric plates due to the collision of several island arcs between outliers of the ancient oceanic crust. The choice of the geomorphic method for studying the seabed is because the science of geomorphology comprehensively studies bottom relief (morphology), its origin, and age. Adequate reconstruction of the causal relationships of exogenous and endogenous processes aids in substantiating the prediction of probable catastrophic seabed events. The results of mathematical calculations have confirmed the geodynamic conclusions within the Barents Sea region.

Sequence-controlled RNA self-processing: computational design, biochemical analysis, and visualization by AFM

PubMed Central

Petkovic, Sonja; Badelt, Stefan; Flamm, Christoph; Delcea, Mihaela

2015-01-01

Reversible chemistry allowing for assembly and disassembly of molecular entities is important for biological self-organization. Thus, ribozymes that support both cleavage and formation of phosphodiester bonds may have contributed to the emergence of functional diversity and increasing complexity of regulatory RNAs in early life. We have previously engineered a variant of the hairpin ribozyme that shows how ribozymes may have circularized or extended their own length by forming concatemers. Using the Vienna RNA package, we now optimized this hairpin ribozyme variant and selected four different RNA sequences that were expected to circularize more efficiently or form longer concatemers upon transcription. (Two-dimensional) PAGE analysis confirms that (i) all four selected ribozymes are catalytically active and (ii) high yields of cyclic species are obtained. AFM imaging in combination with RNA structure prediction enabled us to calculate the distributions of monomers and self-concatenated dimers and trimers. Our results show that computationally optimized molecules do form reasonable amounts of trimers, which has not been observed for the original system so far, and we demonstrate that the combination of theoretical prediction, biochemical and physical analysis is a promising approach toward accurate prediction of ribozyme behavior and design of ribozymes with predefined functions. PMID:25999318

Program of Research in Flight Dynamics, The George Washington University at NASA Langley Research Center

NASA Technical Reports Server (NTRS)

Murphy, Patrick C. (Technical Monitor); Klein, Vladislav

2005-01-01

The program objectives are fully defined in the original proposal entitled Program of Research in Flight Dynamics in GW at NASA Langley Research Center, which was originated March 20, 1975, and in the renewals of the research program from January 1, 2003 to September 30, 2005. The program in its present form includes three major topics: 1. the improvement of existing methods and development of new methods for wind tunnel and flight data analysis, 2. the application of these methods to wind tunnel and flight test data obtained from advanced airplanes, 3. the correlation of flight results with wind tunnel measurements, and theoretical predictions.

German Translation and Validation of the Cognitive Style Questionnaire Short Form (CSQ-SF-D)

PubMed Central

Huys, Quentin J. M.; Renz, Daniel; Petzschner, Frederike; Berwian, Isabel; Stoppel, Christian; Haker, Helene

2016-01-01

Background The Cognitive Style Questionnaire is a valuable tool for the assessment of hopeless cognitive styles in depression research, with predictive power in longitudinal studies. However, it is very burdensome to administer. Even the short form is still long, and neither this nor the original version exist in validated German translations. Methods The questionnaire was translated from English to German, back-translated and commented on by clinicians. The reliability, factor structure and external validity of an online form of the questionnaire were examined on 214 participants. External validity was measured on a subset of 90 subjects. Results The resulting CSQ-SF-D had good to excellent reliability, both across items and subscales, and similar external validity to the original English version. The internality subscale appeared less robust than other subscales. A detailed analysis of individual item performance suggests that stable results could be achieved with a very short form (CSQ-VSF-D) including only 27 of the 72 items. Conclusions The CSQ-SF-D is a validated and freely distributed translation of the CSQ-SF into German. This should make efficient assessment of cognitive style in German samples more accessible to researchers. PMID:26934499

German Translation and Validation of the Cognitive Style Questionnaire Short Form (CSQ-SF-D).

PubMed

Huys, Quentin J M; Renz, Daniel; Petzschner, Frederike; Berwian, Isabel; Stoppel, Christian; Haker, Helene

2016-01-01

The Cognitive Style Questionnaire is a valuable tool for the assessment of hopeless cognitive styles in depression research, with predictive power in longitudinal studies. However, it is very burdensome to administer. Even the short form is still long, and neither this nor the original version exist in validated German translations. The questionnaire was translated from English to German, back-translated and commented on by clinicians. The reliability, factor structure and external validity of an online form of the questionnaire were examined on 214 participants. External validity was measured on a subset of 90 subjects. The resulting CSQ-SF-D had good to excellent reliability, both across items and subscales, and similar external validity to the original English version. The internality subscale appeared less robust than other subscales. A detailed analysis of individual item performance suggests that stable results could be achieved with a very short form (CSQ-VSF-D) including only 27 of the 72 items. The CSQ-SF-D is a validated and freely distributed translation of the CSQ-SF into German. This should make efficient assessment of cognitive style in German samples more accessible to researchers.

Predicting Three-Dimensional Conformations of Peptides Constructed of Only Glycine, Alanine, Aspartic Acid, and Valine

NASA Astrophysics Data System (ADS)

Oda, Akifumi; Fukuyoshi, Shuichi

2015-06-01

The GADV hypothesis is a form of the protein world hypothesis, which suggests that life originated from proteins (Lacey et al. 1999; Ikehara 2002; Andras 2006). In the GADV hypothesis, life is thought to have originated from primitive proteins constructed of only glycine, alanine, aspartic acid, and valine ([GADV]-proteins). In this study, the three-dimensional (3D) conformations of randomly generated short [GADV]-peptides were computationally investigated using replica-exchange molecular dynamics (REMD) simulations (Sugita and Okamoto 1999). Because the peptides used in this study consisted of only 20 residues each, they could not form certain 3D structures. However, the conformational tendencies of the peptides were elucidated by analyzing the conformational ensembles generated by REMD simulations. The results indicate that secondary structures can be formed in several randomly generated [GADV]-peptides. A long helical structure was found in one of the hydrophobic peptides, supporting the conjecture of the GADV hypothesis that many peptides aggregated to form peptide multimers with enzymatic activity in the primordial soup. In addition, these results indicate that REMD simulations can be used for the structural investigation of short peptides.

A karstic origin for the north polar lakes reveals a soluble Titan

NASA Astrophysics Data System (ADS)

Dhingra, Rajani; Barnes, Jason W.; Radebaugh, Jani; Hedman, Matthew M.

2017-10-01

We quantitatively test the karst hypothesis for the formation of Titan's lakes by comparing their morphometry to that of terrestrial karst lakes.Titan is the only place in our solar system other than the Earth known to harbor stable surface liquids. While much has been studied and predicted about the liquid composition and distribution, the origin of the lake basins remains unknown. We use spatial regularity derived from the morphology of these lakes to test the hypothesis that they could be karstic in origin. Earth’s karstic lakes are closed depressions that form when the bedrock is dissolved. Karstic depressions have several distinct features, such as their elongation index and their diameter distributions. These are lognormal, a relationship that holds under the assumption that these lakes originated and evolved over a comparatively short period of time. Furthermore, the spread in sizes of depressions is small, indicating tightly constrained formation processes. In our study, we use statistics to ascertain whether Titan’s lakes follow similar karstic geomorphometric patterns. Cassini RADAR and ISS observations of Titan’s north pole show that the equivalent radii of 224 lakes indeed follow a lognormal distribution just like Earth’s karstic lakes, thus suggesting Earth-like processes may be forming Titan’s lakes.

Research on Fault Rate Prediction Method of T/R Component

NASA Astrophysics Data System (ADS)

Hou, Xiaodong; Yang, Jiangping; Bi, Zengjun; Zhang, Yu

2017-07-01

T/R component is an important part of the large phased array radar antenna array, because of its large numbers, high fault rate, it has important significance for fault prediction. Aiming at the problems of traditional grey model GM(1,1) in practical operation, the discrete grey model is established based on the original model in this paper, and the optimization factor is introduced to optimize the background value, and the linear form of the prediction model is added, the improved discrete grey model of linear regression is proposed, finally, an example is simulated and compared with other models. The results show that the method proposed in this paper has higher accuracy and the solution is simple and the application scope is more extensive.

Pre-buckling responses of Timoshenko nanobeams based on the integral and differential models of nonlocal elasticity: an isogeometric approach

NASA Astrophysics Data System (ADS)

Norouzzadeh, A.; Ansari, R.; Rouhi, H.

2017-05-01

Differential form of Eringen's nonlocal elasticity theory is widely employed to capture the small-scale effects on the behavior of nanostructures. However, paradoxical results are obtained via the differential nonlocal constitutive relations in some cases such as in the vibration and bending analysis of cantilevers, and recourse must be made to the integral (original) form of Eringen's theory. Motivated by this consideration, a novel nonlocal formulation is developed herein based on the original formulation of Eringen's theory to study the buckling behavior of nanobeams. The governing equations are derived according to the Timoshenko beam theory, and are represented in a suitable vector-matrix form which is applicable to the finite-element analysis. In addition, an isogeometric analysis (IGA) is conducted for the solution of buckling problem. Construction of exact geometry using non-uniform rational B-splines and easy implementation of geometry refinement tools are the main advantages of IGA. A comparison study is performed between the predictions of integral and differential nonlocal models for nanobeams under different kinds of end conditions.

Large-Scale Aerosol Modeling and Analysis

DTIC Science & Technology

2007-09-30

deserts of the world: Arabian Gulf, Sea of Japan, China Sea , Mediterranean Sea , and the Tropical Atlantic Ocean. NAAPS also accurately predicts the...fate of large-scale smoke and pollution plumes. With its global and continuous coverage, 1 Report Documentation Page Form ApprovedOMB No. 0704-0188...origin of dust plumes impacting naval operations in the Red Sea , Mediterranean, eastern Atlantic, Gulf of Guinea, Sea of Japan, Yellow Sea , and East

Prospective Coding by Spiking Neurons

PubMed Central

Brea, Johanni; Gaál, Alexisz Tamás; Senn, Walter

2016-01-01

Animals learn to make predictions, such as associating the sound of a bell with upcoming feeding or predicting a movement that a motor command is eliciting. How predictions are realized on the neuronal level and what plasticity rule underlies their learning is not well understood. Here we propose a biologically plausible synaptic plasticity rule to learn predictions on a single neuron level on a timescale of seconds. The learning rule allows a spiking two-compartment neuron to match its current firing rate to its own expected future discounted firing rate. For instance, if an originally neutral event is repeatedly followed by an event that elevates the firing rate of a neuron, the originally neutral event will eventually also elevate the neuron’s firing rate. The plasticity rule is a form of spike timing dependent plasticity in which a presynaptic spike followed by a postsynaptic spike leads to potentiation. Even if the plasticity window has a width of 20 milliseconds, associations on the time scale of seconds can be learned. We illustrate prospective coding with three examples: learning to predict a time varying input, learning to predict the next stimulus in a delayed paired-associate task and learning with a recurrent network to reproduce a temporally compressed version of a sequence. We discuss the potential role of the learning mechanism in classical trace conditioning. In the special case that the signal to be predicted encodes reward, the neuron learns to predict the discounted future reward and learning is closely related to the temporal difference learning algorithm TD(λ). PMID:27341100

A Protosolar Nebula Origin for the Ices Agglomerated by Comet 67P/Churyumov-Gerasimenko

NASA Astrophysics Data System (ADS)

Mousis, O.; Lunine, J. I.; Luspay-Kuti, A.; Guillot, T.; Marty, B.; Ali-Dib, M.; Wurz, P.; Altwegg, K.; Bieler, A.; Hässig, M.; Rubin, M.; Vernazza, P.; Waite, J. H.

2016-03-01

The nature of the icy material accreted by comets during their formation in the outer regions of the protosolar nebula (PSN) is a major open question in planetary science. Some scenarios of comet formation predict that these bodies agglomerated from crystalline ices condensed in the PSN. Concurrently, alternative scenarios suggest that comets accreted amorphous ice originating from the interstellar cloud or from the very distant regions of the PSN. On the basis of existing laboratory and modeling data, we find that the N2/CO and Ar/CO ratios measured in the coma of the Jupiter-family comet 67P/Churyumov-Gerasimenko by the Rosetta Orbiter Spectrometer for Ion and Neutral Analysis instrument on board the European Space Agency’s Rosetta spacecraft match those predicted for gases trapped in clathrates. If these measurements are representative of the bulk N2/CO and Ar/CO ratios in 67P/Churyumov-Gerasimenko, it implies that the ices accreted by the comet formed in the nebula and do not originate from the interstellar medium, supporting the idea that the building blocks of outer solar system bodies have been formed from clathrates and possibly from pure crystalline ices. Moreover, because 67P/Churyumov-Gerasimenko is impoverished in Ar and N2, the volatile enrichments observed in Jupiter’s atmosphere cannot be explained solely via the accretion of building blocks with similar compositions and require an additional delivery source. A potential source may be the accretion of gas from the nebula that has been progressively enriched in heavy elements due to photoevaporation.

The development of the Australian Space Forecast Centre (ASFC)

NASA Astrophysics Data System (ADS)

Wilkinson, Phil; Kennewell, John A.; Cole, David

2018-05-01

The Ionospheric Prediction Service (IPS) was formed in 1947 to provide monthly prediction services for high frequency (HF) radio, in particular to support HF communications with the United Kingdom. It was quickly recognized that to be effective such a service also had to provide advice when ionospheric storms prevented HF communications from taking place. With the advent of the International Geophysical Year (IGY), short-term forecasts were also required for research programmes and the task of supplying the Australian input to these was given to Frank Cook, of the IPS, while Jack Turner, also of the IPS, supervised the generation of ionospheric maps to support high latitude HF communications. These two important IGY activities formed the platform on which all future IPS services would be built. This paper reviews the development of the Australian Space Forecast Centre (ASFC), which arose from these early origins.

Extension of Ko Straight-Beam Displacement Theory to Deformed Shape Predictions of Slender Curved Structures

NASA Technical Reports Server (NTRS)

Ko, William L.; Fleischer, Van Tran

2011-01-01

The Ko displacement theory originally developed for shape predictions of straight beams is extended to shape predictions of curved beams. The surface strains needed for shape predictions were analytically generated from finite-element nodal stress outputs. With the aid of finite-element displacement outputs, mathematical functional forms for curvature-effect correction terms are established and incorporated into straight-beam deflection equations for shape predictions of both cantilever and two-point supported curved beams. The newly established deflection equations for cantilever curved beams could provide quite accurate shape predictions for different cantilever curved beams, including the quarter-circle cantilever beam. Furthermore, the newly formulated deflection equations for two-point supported curved beams could provide accurate shape predictions for a range of two-point supported curved beams, including the full-circular ring. Accuracy of the newly developed curved-beam deflection equations is validated through shape prediction analysis of curved beams embedded in the windward shallow spherical shell of a generic crew exploration vehicle. A single-point collocation method for optimization of shape predictions is discussed in detail

A viable logarithmic f(R) model for inflation

DOE Office of Scientific and Technical Information (OSTI.GOV)

Amin, M.; Khalil, S.; Salah, M.

2016-08-18

Inflation in the framework of f(R) modified gravity is revisited. We study the conditions that f(R) should satisfy in order to lead to a viable inflationary model in the original form and in the Einstein frame. Based on these criteria we propose a new logarithmic model as a potential candidate for f(R) theories aiming to describe inflation consistent with observations from Planck satellite (2015). The model predicts scalar spectral index 0.9615

Scoring schemes of palindrome clusters for more sensitive prediction of replication origins in herpesviruses

PubMed Central

Chew, David S. H.; Choi, Kwok Pui; Leung, Ming-Ying

2005-01-01

Many empirical studies show that there are unusual clusters of palindromes, closely spaced direct and inverted repeats around the replication origins of herpesviruses. In this paper, we introduce two new scoring schemes to quantify the spatial abundance of palindromes in a genomic sequence. Based on these scoring schemes, a computational method to predict the locations of replication origins is developed. When our predictions are compared with 39 known or annotated replication origins in 19 herpesviruses, close to 80% of the replication origins are located within 2% of the genome length. A list of predicted locations of replication origins in all the known herpesviruses with complete genome sequences is reported. PMID:16141192

Collisions, Cannibals, and the Memory of Long-lost Bed Forms: The Hyster(et)ical Story Revealed

NASA Astrophysics Data System (ADS)

Jerolmack, D. J.; Martin, R. L.

2015-12-01

Sandy river-bed morphology often lags changes in water discharge, producing hysteresis in the relation between discharge and bed-form geometry. While this effect is well known, its origins are not. In this talk we present experimental and field results that reveal these origins. We show that the primary mechanism of bed form growth in a rising flood is merger induced by collisions, which occur due to a dispersion in migration rates. At the start of a flood the bed forms are small and transport rate is high, so growth is rapid. Conversely, on the falling limb of a flood the bed forms are large while the transport rate is small. If the flood recedes rapidly enough, the large bed forms cease migrating and small, secondary bed forms emerge on their backs. These smaller features cannibalize the original, relict structures which slowly diffuse away. (We do not distinguish between ripples and dunes, the data do not indicate any reason to do so, and we therefore recuse ourselves from discussing that tiring topic.). The timescale of decay is much larger than growth, leaving a memory of peak-flood conditions that may persist until the next flood. Thus, the timescales of both growth (Tg) and decay (Td) are related to a simple bed form turnover time - the time to displace a bed form's volume by transport - however, the turnover time is different for growth vs. decay. This reveals three different regimes for the response of bed forms to a flood: (1) a slow flood with a timescale Tf > Td > Tg is quasi-steady, i.e., bed forms grow and shrink with no lag between morphology and flow; (2) an intermediate flood with Td > Tf > Tg exhibits quasi-steady growth, but decay lags the flow; and (3) a fast flood with Td > Tg > Tf produces a lag between morphology and flow over the entire hydrograph. Regimes 2 and 3 produce hysteretical behavior, with 3 being the most extreme. We discuss the implications of these results for: predicting stage-discharge relations, anticipating and understanding hysteresis in other geomorphic systems, and improving the overall human condition.

Extended micro objects as dark matter particles

NASA Astrophysics Data System (ADS)

Belotsky, K.; Rubin, S.; Svadkovsky, I.

2017-05-01

Models of various forms of composite dark matter (DM) predicted by particle theory and the DM constituents formed by gravity that are not reduced to new elementary particle candidates are discussed. Main attention is paid to a gravitational origin of the DM. The influence of extended mass spectrum of primordial black holes on observational limits is considered. It is shown that non-uniformly deformed extra space can be considered as point-like masses which possess only gravitational interaction with each other and with the ordinary particles. The recently discussed six-dimensional stable wormholes could contribute to the DM. The contribution of dark atoms is also considered.

Predicted electric-field-induced hexatic structure in an ionomer membrane

NASA Astrophysics Data System (ADS)

Allahyarov, Elshad; Taylor, Philip L.

2009-08-01

Coarse-grained molecular-dynamics simulations were used to study the morphological changes induced in a Nafion®-like ionomer by the imposition of a strong electric field. We observe the formation of structures aligned along the direction of the applied field. The polar head groups of the ionomer sidechains aggregate into clusters, which then form rodlike formations which assemble into a hexatic array aligned with the direction of the field. Occasionally these lines of sulfonates and protons form a helical structure. Upon removal of the electric field, the hexatic array of rodlike structures persists and has a lower calculated free energy than the original isotropic morphology.

Teste Albumasare cum Sibylla: astrology and the Sibyls in medieval Europe.

PubMed

Smoller, Laura Ackerman

2010-06-01

In the 1480s Dominican humanist Filippo de' Barbieri published an illustration of a supposedly ancient female seer called the 'Sybilla Chimica', whose prophetic text repeated the words of the ninth-century astrologer Abu Ma'shar. In tracing the origins of Barbieri's astrological Sibyl, this article examines three sometimes interlocking traditions: the attribution of an ante-diluvian history to the science of the stars, the assertion of astrology's origins in divine revelation, and the belief in the ancient Sibyls' predictions of the birth of Christ and other Christian truths. Medieval authors from the twelfth century on began to cite these traditions together, thereby simultaneously authorizing the use of astrology to predict religious changes and blurring the categories of natural and supernatural as applied to human understanding. This blending of astrology and prophecy appears notably in works by such authors as John of Paris, John of Legnano, Johannes Lichtenberger, and Marsilio Ficino. Ultimately the trajectory that produced Barbieri's astrological Sibyl would lead to a wave of astrological apocalyptic predictions in the sixteenth and seventeenth centuries, as well as to the harnessing of astrology for the defense of the faith in the form of an astrological natural theology, sacralizing science as well as nature.

Symmetry breaking in nematic liquid crystals: analogy with cosmology and magnetism.

PubMed

Repnik, R; Ranjkesh, A; Simonka, V; Ambrozic, M; Bradac, Z; Kralj, S

2013-10-09

Universal behavior related to continuous symmetry breaking in nematic liquid crystals is studied using Brownian molecular dynamics. A three-dimensional lattice system of rod-like objects interacting via the Lebwohl-Lasher interaction is considered. We test the applicability of predictions originally derived in cosmology and magnetism. In the first part we focus on coarsening dynamics following the temperature driven isotropic-nematic phase transition for different quench rates. The behavior in the early coarsening regime supports predictions made originally by Kibble in cosmology. For fast enough quenches, symmetry breaking and causality give rise to a dense tangle of defects. When the degree of orientational ordering is large enough, well defined protodomains characterized by a single average domain length are formed. With time subcritical domains gradually vanish and supercritical domains grow with time, exhibiting a universal scaling law. In the second part of the paper we study the impact of random-field-type disorder on a range of ordering in the (symmetry broken) nematic phase. We demonstrate that short-range order is observed even for a minute concentration of impurities, giving rise to disorder in line with the Imry-Ma theorem prediction only for the appropriate history of systems.

Binary Black Hole Mergers from Globular Clusters: Implications for Advanced LIGO.

PubMed

Rodriguez, Carl L; Morscher, Meagan; Pattabiraman, Bharath; Chatterjee, Sourav; Haster, Carl-Johan; Rasio, Frederic A

2015-07-31

The predicted rate of binary black hole mergers from galactic fields can vary over several orders of magnitude and is extremely sensitive to the assumptions of stellar evolution. But in dense stellar environments such as globular clusters, binary black holes form by well-understood gravitational interactions. In this Letter, we study the formation of black hole binaries in an extensive collection of realistic globular cluster models. By comparing these models to observed Milky Way and extragalactic globular clusters, we find that the mergers of dynamically formed binaries could be detected at a rate of ∼100 per year, potentially dominating the binary black hole merger rate. We also find that a majority of cluster-formed binaries are more massive than their field-formed counterparts, suggesting that Advanced LIGO could identify certain binaries as originating from dense stellar environments.

When less is more: Psychometric properties of Norwegian short-forms of the Ambivalent Sexism Scales (ASI and AMI) and the Illinois Rape Myth Acceptance (IRMA) Scale.

PubMed

Bendixen, Mons; Kennair, Leif Edward Ottesen

2017-12-01

This paper reports on the development and the psychometric properties of short forms of Ambivalent Sexism Scales toward women (ASI; Glick & Fiske, 1996) and men (AMI; Glick & Fiske, 1999), and a scale measuring rape stereotypes (IRMA; McMahon & Farmer, 2011). The short form AMI/ASI were applied for examining gender and educational differences in university students (N = 512) and in high school students (N = 1381), and for predicting individual differences in rape stereotypes in the latter. The short forms demonstrated good to excellent psychometric properties across samples of emerging adults. Relative to female students, male students reported markedly more hostility toward women and more stereotypical beliefs about rape. Despite sampling from a highly gender egalitarian and secular culture, these gender differences are on a par with those reported internationally. Rape stereotypes were predicted by sexism in high school students. Additional predictors were educational program, relationship status, and acceptance of derogatory sexual slurs. The paper questions the validity of separate constructs for benevolent sexism toward women versus men. The short form versions of the scales may substitute the original versions in future research, and help prevent attrition while measuring the same constructs. © 2017 Scandinavian Psychological Associations and John Wiley & Sons Ltd.

The origin and dynamic evolution of chemical information transfer

PubMed Central

Steiger, Sandra; Schmitt, Thomas; Schaefer, H. Martin

2011-01-01

Although chemical communication is the most widespread form of communication, its evolution and diversity are not well understood. By integrating studies of a wide range of terrestrial plants and animals, we show that many chemicals are emitted, which can unintentionally provide information (cues) and, therefore, act as direct precursors for the evolution of intentional communication (signals). Depending on the content, design and the original function of the cue, there are predictable ways that selection can enhance the communicative function of chemicals. We review recent progress on how efficacy-based selection by receivers leads to distinct evolutionary trajectories of chemical communication. Because the original function of a cue may channel but also constrain the evolution of functional communication, we show that a broad perspective on multiple selective pressures acting upon chemicals provides important insights into the origin and dynamic evolution of chemical information transfer. Finally, we argue that integrating chemical ecology into communication theory may significantly enhance our understanding of the evolution, the design and the content of signals in general. PMID:21177681

Alternative hot spot formation techniques using liquid deuterium-tritium layer inertial confinement fusion capsules

DOE Office of Scientific and Technical Information (OSTI.GOV)

Olson, R. E.; Leeper, R. J.

2013-09-27

The baseline DT ice layer inertial confinement fusion (ICF) ignition capsule design requires a hot spot convergence ratio of ~34 with a hot spot that is formed from DT mass originally residing in a very thin layer at the inner DT ice surface. In the present paper, we propose alternative ICF capsule designs in which the hot spot is formed mostly or entirely from mass originating within a spherical volume of DT vapor. Simulations of the implosion and hot spot formation in two DT liquid layer ICF capsule concepts—the DT wetted hydrocarbon (CH) foam concept and the “fast formed liquid”more » (FFL) concept—are described and compared to simulations of standard DT ice layer capsules. 1D simulations are used to compare the drive requirements, the optimal shock timing, the radial dependence of hot spot specific energy gain, and the hot spot convergence ratio in low vapor pressure (DT ice) and high vapor pressure (DT liquid) capsules. 2D simulations are used to compare the relative sensitivities to low-mode x-ray flux asymmetries in the DT ice and DT liquid capsules. It is found that the overall thermonuclear yields predicted for DT liquid layer capsules are less than yields predicted for DT ice layer capsules in simulations using comparable capsule size and absorbed energy. However, the wetted foam and FFL designs allow for flexibility in hot spot convergence ratio through the adjustment of the initial cryogenic capsule temperature and, hence, DT vapor density, with a potentially improved robustness to low-mode x-ray flux asymmetry.« less

Alternative hot spot formation techniques using liquid deuterium-tritium layer inertial confinement fusion capsules

DOE Office of Scientific and Technical Information (OSTI.GOV)

Olson, R. E.; Leeper, R. J.

2013-09-15

The baseline DT ice layer inertial confinement fusion (ICF) ignition capsule design requires a hot spot convergence ratio of ∼34 with a hot spot that is formed from DT mass originally residing in a very thin layer at the inner DT ice surface. In the present paper, we propose alternative ICF capsule designs in which the hot spot is formed mostly or entirely from mass originating within a spherical volume of DT vapor. Simulations of the implosion and hot spot formation in two DT liquid layer ICF capsule concepts—the DT wetted hydrocarbon (CH) foam concept and the “fast formed liquid”more » (FFL) concept—are described and compared to simulations of standard DT ice layer capsules. 1D simulations are used to compare the drive requirements, the optimal shock timing, the radial dependence of hot spot specific energy gain, and the hot spot convergence ratio in low vapor pressure (DT ice) and high vapor pressure (DT liquid) capsules. 2D simulations are used to compare the relative sensitivities to low-mode x-ray flux asymmetries in the DT ice and DT liquid capsules. It is found that the overall thermonuclear yields predicted for DT liquid layer capsules are less than yields predicted for DT ice layer capsules in simulations using comparable capsule size and absorbed energy. However, the wetted foam and FFL designs allow for flexibility in hot spot convergence ratio through the adjustment of the initial cryogenic capsule temperature and, hence, DT vapor density, with a potentially improved robustness to low-mode x-ray flux asymmetry.« less

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Federal Register 2010, 2011, 2012, 2013, 2014

2012-10-30

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Federal Register 2010, 2011, 2012, 2013, 2014

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Applications of holographic spacetime

NASA Astrophysics Data System (ADS)

Torres, Terrence J.

Here we present an overview of the theory of holographic spacetime (HST), originally devised and primarily developed by Tom Banks and Willy Fischler, as well as its various applications and predictions for cosmology and particle phenomenology. First we cover the basic theory and motivation for holographic spacetime and move on to present the latest developments therein as of the time of this writing. Then we indicate the origin of the quantum degrees of freedom in the theory and then present a correspondence with low energy effective field theory. Further, we proceed to show the general origins of inflation and the cosmic microwave background (CMB) within the theory of HST as well as predict the functional forms of two and three point correlation functions for scalar and tensor curvature fluctuations in the early universe. Next, we constrain the theory parameters by insisting on agreement with observational bounds on the scalar spectral index of CMB fluctuations from the Planck experiment as well as theoretical bounds on the number of e-folds of inflation. Finally, we argue that HST predicts specific gauge structures for the low-energy effective field theory at the present era and proceed to construct a viable supersymmetric model extension. Constraints on model parameters and couplings are then calculated by numerically minimizing the theory's scalar potential and comparing the resultant model mass spectra to current observational limits from the LHC SUSY searches. In the end we find that the low-energy theory, while presenting a little hierarchy problem, is fully compatible with current observational limits. Additionally, the high-energy underlying theory is generically compatible with observational constraints stemming from inflation, and predictions on favored model parameters are given.

A PROTOSOLAR NEBULA ORIGIN FOR THE ICES AGGLOMERATED BY COMET 67P/CHURYUMOV–GERASIMENKO

DOE Office of Scientific and Technical Information (OSTI.GOV)

Mousis, O.; Vernazza, P.; Lunine, J. I.

The nature of the icy material accreted by comets during their formation in the outer regions of the protosolar nebula (PSN) is a major open question in planetary science. Some scenarios of comet formation predict that these bodies agglomerated from crystalline ices condensed in the PSN. Concurrently, alternative scenarios suggest that comets accreted amorphous ice originating from the interstellar cloud or from the very distant regions of the PSN. On the basis of existing laboratory and modeling data, we find that the N{sub 2}/CO and Ar/CO ratios measured in the coma of the Jupiter-family comet 67P/Churyumov–Gerasimenko by the Rosetta Orbitermore » Spectrometer for Ion and Neutral Analysis instrument on board the European Space Agency’s Rosetta spacecraft match those predicted for gases trapped in clathrates. If these measurements are representative of the bulk N{sub 2}/CO and Ar/CO ratios in 67P/Churyumov–Gerasimenko, it implies that the ices accreted by the comet formed in the nebula and do not originate from the interstellar medium, supporting the idea that the building blocks of outer solar system bodies have been formed from clathrates and possibly from pure crystalline ices. Moreover, because 67P/Churyumov–Gerasimenko is impoverished in Ar and N{sub 2}, the volatile enrichments observed in Jupiter’s atmosphere cannot be explained solely via the accretion of building blocks with similar compositions and require an additional delivery source. A potential source may be the accretion of gas from the nebula that has been progressively enriched in heavy elements due to photoevaporation.« less

Response prediction techniques and case studies of a path blocking system based on Global Transmissibility Direct Transmissibility method

NASA Astrophysics Data System (ADS)

Wang, Zengwei; Zhu, Ping; Zhao, Jianxuan

2017-02-01

In this paper, the prediction capabilities of the Global Transmissibility Direct Transmissibility (GTDT) method are further developed. Two path blocking techniques solely using the easily measured variables of the original system to predict the response of a path blocking system are generalized to finite element models of continuous systems. The proposed techniques are derived theoretically in a general form for the scenarios of setting the response of a subsystem to zero and of removing the link between two directly connected subsystems. The objective of this paper is to verify the reliability of the proposed techniques by finite element simulations. Two typical cases, the structural vibration transmission case and the structure-borne sound case, in two different configurations are employed to illustrate the validity of proposed techniques. The points of attention for each case have been discussed, and conclusions are given. It is shown that for the two cases of blocking a subsystem the proposed techniques are able to predict the new response using measured variables of the original system, even though operational forces are unknown. For the structural vibration transmission case of removing a connector between two components, the proposed techniques are available only when the rotational component responses of the connector are very small. The proposed techniques offer relative path measures and provide an alternative way to deal with NVH problems. The work in this paper provides guidance and reference for the engineering application of the GTDT prediction techniques.

Nanogranular origin of concrete creep.

PubMed

Vandamme, Matthieu; Ulm, Franz-Josef

2009-06-30

Concrete, the solid that forms at room temperature from mixing Portland cement with water, sand, and aggregates, suffers from time-dependent deformation under load. This creep occurs at a rate that deteriorates the durability and truncates the lifespan of concrete structures. However, despite decades of research, the origin of concrete creep remains unknown. Here, we measure the in situ creep behavior of calcium-silicate-hydrates (C-S-H), the nano-meter sized particles that form the fundamental building block of Portland cement concrete. We show that C-S-H exhibits a logarithmic creep that depends only on the packing of 3 structurally distinct but compositionally similar C-S-H forms: low density, high density, ultra-high density. We demonstrate that the creep rate ( approximately 1/t) is likely due to the rearrangement of nanoscale particles around limit packing densities following the free-volume dynamics theory of granular physics. These findings could lead to a new basis for nanoengineering concrete materials and structures with minimal creep rates monitored by packing density distributions of nanoscale particles, and predicted by nanoscale creep measurements in some minute time, which are as exact as macroscopic creep tests carried out over years.

Nanogranular origin of concrete creep

PubMed Central

Vandamme, Matthieu; Ulm, Franz-Josef

2009-01-01

Concrete, the solid that forms at room temperature from mixing Portland cement with water, sand, and aggregates, suffers from time-dependent deformation under load. This creep occurs at a rate that deteriorates the durability and truncates the lifespan of concrete structures. However, despite decades of research, the origin of concrete creep remains unknown. Here, we measure the in situ creep behavior of calcium–silicate–hydrates (C–S–H), the nano-meter sized particles that form the fundamental building block of Portland cement concrete. We show that C–S–H exhibits a logarithmic creep that depends only on the packing of 3 structurally distinct but compositionally similar C–S–H forms: low density, high density, ultra-high density. We demonstrate that the creep rate (≈1/t) is likely due to the rearrangement of nanoscale particles around limit packing densities following the free-volume dynamics theory of granular physics. These findings could lead to a new basis for nanoengineering concrete materials and structures with minimal creep rates monitored by packing density distributions of nanoscale particles, and predicted by nanoscale creep measurements in some minute time, which are as exact as macroscopic creep tests carried out over years. PMID:19541652

A clustered origin for isolated massive stars

NASA Astrophysics Data System (ADS)

Lucas, William E.; Rybak, Matus; Bonnell, Ian A.; Gieles, Mark

2018-03-01

High-mass stars are commonly found in stellar clusters promoting the idea that their formation occurs due to the physical processes linked with a young stellar cluster. It has recently been reported that isolated high-mass stars are present in the Large Magellanic Cloud. Due to their low velocities, it has been argued that these are high-mass stars which formed without a surrounding stellar cluster. In this paper, we present an alternative explanation for the origin of these stars in which they formed in a cluster environment but are subsequently dispersed into the field as their natal cluster is tidally disrupted in a merger with a higher mass cluster. They escape the merged cluster with relatively low velocities typical of the cluster interaction and thus of the larger scale velocity dispersion, similarly to the observed stars. N-body simulations of cluster mergers predict a sizeable population of low-velocity (≤20 km s-1), high-mass stars at distances of >20 pc from the cluster. High-mass clusters in which gas poor mergers are frequent would be expected to commonly have haloes of young stars, including high-mass stars, which were actually formed in a cluster environment.

Resolving the inconsistency between the ice giants and cometary D/H ratios

NASA Astrophysics Data System (ADS)

Ali-Dib, M.; Mousis, O.; Petit, J.-M.; Lunine, J. I.

2014-12-01

The properties and chemical compositions of giant planets strongly depend on their formation locations. The formation mechanisms of the ice giants Uranus and Neptune, and their elemental and isotopic compositions, have long been debated. The density of solids in the outer protosolar nebula is too low to explain their formation within a timescale consistent with the presence of the gaseous protoplanetary disk, and spectroscopic observations show that both planets are highly enriched in carbon, very poor in nitrogen, and the ices from which they originally formed might had deuterium-to-hydrogen ratios lower than the predicted cometary value, unexplained properties observed in no other planets. Here we show that all these properties can be explained naturally if Uranus and Neptune both formed at the carbon monoxide iceline location, namely the region where this gas condensates in the protosolar nebula. This outer region of the protosolar nebula intrinsically has enough surface density to form both planets from carbon-rich solids but nitrogen-depleted gas, in abundances consistent with their observed values. Water rich interiors originating mostly from transformed CO ices reconcile the D/H value observed in Uranus and Neptune with the cometary value.

How Do Marine Pelagic Species Respond to Climate Change? Theories and Observations

NASA Astrophysics Data System (ADS)

Beaugrand, Grégory; Kirby, Richard R.

2018-01-01

In this review, we show how climate affects species, communities, and ecosystems, and why many responses from the species to the biome level originate from the interaction between the species’ ecological niche and changes in the environmental regime in both space and time. We describe a theory that allows us to understand and predict how marine species react to climate-induced changes in ecological conditions, how communities form and are reconfigured, and so how biodiversity is arranged and may respond to climate change. Our study shows that the responses of species to climate change are therefore intelligible—that is, they have a strong deterministic component and can be predicted.

Ab initio gene identification in metagenomic sequences

PubMed Central

Zhu, Wenhan; Lomsadze, Alexandre; Borodovsky, Mark

2010-01-01

We describe an algorithm for gene identification in DNA sequences derived from shotgun sequencing of microbial communities. Accurate ab initio gene prediction in a short nucleotide sequence of anonymous origin is hampered by uncertainty in model parameters. While several machine learning approaches could be proposed to bypass this difficulty, one effective method is to estimate parameters from dependencies, formed in evolution, between frequencies of oligonucleotides in protein-coding regions and genome nucleotide composition. Original version of the method was proposed in 1999 and has been used since for (i) reconstructing codon frequency vector needed for gene finding in viral genomes and (ii) initializing parameters of self-training gene finding algorithms. With advent of new prokaryotic genomes en masse it became possible to enhance the original approach by using direct polynomial and logistic approximations of oligonucleotide frequencies, as well as by separating models for bacteria and archaea. These advances have increased the accuracy of model reconstruction and, subsequently, gene prediction. We describe the refined method and assess its accuracy on known prokaryotic genomes split into short sequences. Also, we show that as a result of application of the new method, several thousands of new genes could be added to existing annotations of several human and mouse gut metagenomes. PMID:20403810

The source location of mantle plumes from 3D spherical models of mantle convection

NASA Astrophysics Data System (ADS)

Li, Mingming; Zhong, Shijie

2017-11-01

Mantle plumes are thought to originate from thermal boundary layers such as Earth's core-mantle boundary (CMB), and may cause intraplate volcanism such as large igneous provinces (LIPs) on the Earth's surface. Previous studies showed that the original eruption sites of deep-sourced LIPs for the last 200 Myrs occur mostly above the margins of the seismically-observed large low shear velocity provinces (LLSVPs) in the lowermost mantle. However, the mechanism that leads to the distribution of the LIPs is not clear. The location of the LIPs is largely determined by the source location of mantle plumes, but the question is under what conditions mantle plumes form outside, at the edges, or above the middle of LLSVPs. Here, we perform 3D geodynamic calculations and theoretical analyses to study the plume source location in the lowermost mantle. We find that a factor of five decrease of thermal expansivity and a factor of two increase of thermal diffusivity from the surface to the CMB, which are consistent with mineral physics studies, significantly reduce the number of mantle plumes forming far outside of thermochemical piles (i.e., LLSVPs). An increase of mantle viscosity in the lowermost mantle also reduces number of plumes far outside of piles. In addition, we find that strong plumes preferentially form at/near the edges of piles and are generally hotter than that forming on top of piles, which may explain the observations that most LIPs occur above LLSVP margins. However, some plumes originated at pile edges can later appear above the middle of piles due to lateral movement of the plumes and piles and morphologic changes of the piles. ∼65-70% strong plumes are found within 10 degrees from pile edges in our models. Although plate motion exerts significant controls over the large-scale mantle convection in the lower mantle, mantle plume formation at the CMB remains largely controlled by thermal boundary layer instability which makes it difficult to predict geographic locations of most mantle plumes. However, all our models show consistently strong plumes originating from the lowermost mantle beneath Iceland, supporting a deep mantle plume origin of the Iceland volcanism.

Conformational control and DNA-binding mechanism of the metazoan origin recognition complex.

PubMed

Bleichert, Franziska; Leitner, Alexander; Aebersold, Ruedi; Botchan, Michael R; Berger, James M

2018-06-26

In eukaryotes, the heterohexameric origin recognition complex (ORC) coordinates replication onset by facilitating the recruitment and loading of the minichromosome maintenance 2-7 (Mcm2-7) replicative helicase onto DNA to license origins. Drosophila ORC can adopt an autoinhibited configuration that is predicted to prevent Mcm2-7 loading; how the complex is activated and whether other ORC homologs can assume this state are not known. Using chemical cross-linking and mass spectrometry, biochemical assays, and electron microscopy (EM), we show that the autoinhibited state of Drosophila ORC is populated in solution, and that human ORC can also adopt this form. ATP binding to ORC supports a transition from the autoinhibited state to an active configuration, enabling the nucleotide-dependent association of ORC with both DNA and Cdc6. An unstructured N-terminal region adjacent to the conserved ATPase domain of Orc1 is shown to be required for high-affinity ORC-DNA interactions, but not for activation. ORC optimally binds DNA duplexes longer than the predicted footprint of the ORC ATPases associated with a variety of cellular activities (AAA + ) and winged-helix (WH) folds; cryo-EM analysis of Drosophila ORC bound to DNA and Cdc6 indicates that ORC contacts DNA outside of its central core region, bending the DNA away from its central DNA-binding channel. Our findings indicate that ORC autoinhibition may be common to metazoans and that ORC-Cdc6 remodels origin DNA before Mcm2-7 recruitment and loading.

Multisystem altruistic metadynamics—Well-tempered variant

NASA Astrophysics Data System (ADS)

Hošek, Petr; Kříž, Pavel; Toulcová, Daniela; Spiwok, Vojtěch

2017-03-01

Metadynamics method has been widely used to enhance sampling in molecular simulations. Its original form suffers two major drawbacks, poor convergence in complex (especially biomolecular) systems and its serial nature. The first drawback has been addressed by introduction of a convergent variant known as well-tempered metadynamics. The second was addressed by introduction of a parallel multisystem metadynamics referred to as altruistic metadynamics. Here, we combine both approaches into well-tempered altruistic metadynamics. We provide mathematical arguments and trial simulations to show that it accurately predicts free energy surfaces.

Multisystem altruistic metadynamics-Well-tempered variant.

PubMed

Hošek, Petr; Kříž, Pavel; Toulcová, Daniela; Spiwok, Vojtěch

2017-03-28

Metadynamics method has been widely used to enhance sampling in molecular simulations. Its original form suffers two major drawbacks, poor convergence in complex (especially biomolecular) systems and its serial nature. The first drawback has been addressed by introduction of a convergent variant known as well-tempered metadynamics. The second was addressed by introduction of a parallel multisystem metadynamics referred to as altruistic metadynamics. Here, we combine both approaches into well-tempered altruistic metadynamics. We provide mathematical arguments and trial simulations to show that it accurately predicts free energy surfaces.

Application of a New Resource-Constrained Triage Method to Military-Age Victims

DTIC Science & Technology

2009-12-01

evidence based, does not consider resources, and has been shown to be scientifically and opera- tionally flawed.’ General P . K. Carlton, former USAF Surgeon...metric that can be used to predict sur- vival probability) P ^ (t) = the survival probability of victims with original SCORE s treated in time period t. n...function coefficients were derived on the design set, and validated on the test set. The logistic function has the form: P ^ - 1/(1 + e"), where P ^ is

DOE Office of Scientific and Technical Information (OSTI.GOV)

John F. Schabron; A. Troy Pauli; Joseph F. Rovani Jr.

The dispersed particle solution model of petroleum residua structure was used to develop predictors for pyrolytic coke formation. Coking Indexes were developed in prior years that measure how near a pyrolysis system is to coke formation during the coke formation induction period. These have been demonstrated to be universally applicable for residua regardless of the source of the material. Coking onset is coincidental with the destruction of the ordered structure and the formation of a multiphase system. The amount of coke initially formed appears to be a function of the free solvent volume of the original residua. In the currentmore » work, three-dimensional coke make predictability maps were developed at 400 C, 450 C, and 500 C (752 F, 842 F, and 932 F). These relate residence time and free solvent volume to the amount of coke formed at a particular pyrolysis temperature. Activation energies for two apparent types of zero-order coke formation reactions were estimated. The results provide a new tool for ranking residua, gauging proximity to coke formation, and predicting initial coke make tendencies.« less

A microphysics guide to cirrus clouds - Part 1: Cirrus types

NASA Astrophysics Data System (ADS)

Krämer, Martina; Rolf, Christian; Luebke, Anna; Afchine, Armin; Spelten, Nicole; Costa, Anja; Meyer, Jessica; Zöger, Martin; Smith, Jessica; Herman, Robert L.; Buchholz, Bernhard; Ebert, Volker; Baumgardner, Darrel; Borrmann, Stephan; Klingebiel, Marcus; Avallone, Linnea

2016-03-01

The microphysical and radiative properties of cirrus clouds continue to be beyond understanding and thus still represent one of the largest uncertainties in the prediction of the Earth's climate (IPCC, 2013). Our study aims to provide a guide to cirrus microphysics, which is compiled from an extensive set of model simulations, covering the broad range of atmospheric conditions for cirrus formation and evolution. The model results are portrayed in the same parameter space as field measurements, i.e., in the Ice Water Content-Temperature (IWC-T) parameter space. We validate this cirrus analysis approach by evaluating cirrus data sets from 17 aircraft campaigns, conducted in the last 15 years, spending about 94 h in cirrus over Europe, Australia, Brazil as well as South and North America. Altogether, the approach of this study is to track cirrus IWC development with temperature by means of model simulations, compare with observations and then assign, to a certain degree, cirrus microphysics to the observations. Indeed, the field observations show characteristics expected from the simulated Cirrus Guide. For example, high (low) IWCs are found together with high (low) ice crystal concentrations Nice. An important finding from our study is the classification of two types of cirrus with differing formation mechanisms and microphysical properties: the first cirrus type forms directly as ice (in situ origin cirrus) and splits in two subclasses, depending on the prevailing strength of the updraft: in slow updrafts these cirrus are rather thin with lower IWCs, while in fast updrafts thicker cirrus with higher IWCs can form. The second type consists predominantly of thick cirrus originating from mixed phase clouds (i.e., via freezing of liquid droplets - liquid origin cirrus), which are completely glaciated while lifting to the cirrus formation temperature region (< 235 K). In the European field campaigns, slow updraft in situ origin cirrus occur frequently in low- and high-pressure systems, while fast updraft in situ cirrus appear in conjunction with jet streams or gravity waves. Also, liquid origin cirrus mostly related to warm conveyor belts are found. In the US and tropical campaigns, thick liquid origin cirrus which are formed in large convective systems are detected more frequently.

Rapid reversed phase ultra-performance liquid chromatography analysis of the major cocoa polyphenols and inter-relationships of their concentrations in chocolate.

PubMed

Cooper, Karen A; Campos-Giménez, Esther; Jiménez Alvarez, Diego; Nagy, Kornél; Donovan, Jennifer L; Williamson, Gary

2007-04-18

Chocolate and other cocoa-containing products are a rich source of polyphenols. This paper describes an ultra-performance liquid chromatography (UPLC) method that can separate and quantify in 3 min six of the major chocolate polyphenols: catechin; epicatechin; B2 (epicatechin-4beta-8-epicatechin); B5 (epicatechin-4beta-6-epicatechin); C1 (epicatechin-4beta-8-epicatechin-4beta-8-epicatechin); and tetramer D (epicatechin-4beta-8-epicatechin-4beta-8-epicatechin-4beta-8-epicatechin). A survey of 68 chocolate samples indicated that there was a strongly predictive relationship between epicatechin and the other individual polyphenols, especially procyanidin B2 (R 2 = 0.989), even though the chocolates came from varied sources and manufacturers. The relationship was less strong with catechin, and so further work to explore the reasons for this difference was performed. Chiral analysis on a subset of 23 chocolates showed that (-)-epicatechin had a predictive relationship with (+)-catechin in line with the other polyphenols, but not with (-)-catechin (the predominant form). This indicates that (-)-catechin is the most affected by manufacturing conditions, possibly formed through epimerization from (-)-epicatechin during processing. The results show that epicatechin concentrations can be used to predict the content of other polyphenols, especially B2 and C1, and total polyphenols content. Finally, the (-)-catechin content is not predictable from the epicatechin content, and it is concluded that this is the main form of polyphenol that varies according to manufacturing conditions and cocoa origin.

A generalized analysis of hydrophobic and loop clusters within globular protein sequences

PubMed Central

Eudes, Richard; Le Tuan, Khanh; Delettré, Jean; Mornon, Jean-Paul; Callebaut, Isabelle

2007-01-01

Background Hydrophobic Cluster Analysis (HCA) is an efficient way to compare highly divergent sequences through the implicit secondary structure information directly derived from hydrophobic clusters. However, its efficiency and application are currently limited by the need of user expertise. In order to help the analysis of HCA plots, we report here the structural preferences of hydrophobic cluster species, which are frequently encountered in globular domains of proteins. These species are characterized only by their hydrophobic/non-hydrophobic dichotomy. This analysis has been extended to loop-forming clusters, using an appropriate loop alphabet. Results The structural behavior of hydrophobic cluster species, which are typical of protein globular domains, was investigated within banks of experimental structures, considered at different levels of sequence redundancy. The 294 more frequent hydrophobic cluster species were analyzed with regard to their association with the different secondary structures (frequencies of association with secondary structures and secondary structure propensities). Hydrophobic cluster species are predominantly associated with regular secondary structures, and a large part (60 %) reveals preferences for α-helices or β-strands. Moreover, the analysis of the hydrophobic cluster amino acid composition generally allows for finer prediction of the regular secondary structure associated with the considered cluster within a cluster species. We also investigated the behavior of loop forming clusters, using a "PGDNS" alphabet. These loop clusters do not overlap with hydrophobic clusters and are highly associated with coils. Finally, the structural information contained in the hydrophobic structural words, as deduced from experimental structures, was compared to the PSI-PRED predictions, revealing that β-strands and especially α-helices are generally over-predicted within the limits of typical β and α hydrophobic clusters. Conclusion The dictionary of hydrophobic clusters described here can help the HCA user to interpret and compare the HCA plots of globular protein sequences, as well as provides an original fundamental insight into the structural bricks of protein folds. Moreover, the novel loop cluster analysis brings additional information for secondary structure prediction on the whole sequence through a generalized cluster analysis (GCA), and not only on regular secondary structures. Such information lays the foundations for developing a new and original tool for secondary structure prediction. PMID:17210072

A single-cell spiking model for the origin of grid-cell patterns

PubMed Central

Kempter, Richard

2017-01-01

Spatial cognition in mammals is thought to rely on the activity of grid cells in the entorhinal cortex, yet the fundamental principles underlying the origin of grid-cell firing are still debated. Grid-like patterns could emerge via Hebbian learning and neuronal adaptation, but current computational models remained too abstract to allow direct confrontation with experimental data. Here, we propose a single-cell spiking model that generates grid firing fields via spike-rate adaptation and spike-timing dependent plasticity. Through rigorous mathematical analysis applicable in the linear limit, we quantitatively predict the requirements for grid-pattern formation, and we establish a direct link to classical pattern-forming systems of the Turing type. Our study lays the groundwork for biophysically-realistic models of grid-cell activity. PMID:28968386

Survey Of Lossless Image Coding Techniques

NASA Astrophysics Data System (ADS)

Melnychuck, Paul W.; Rabbani, Majid

1989-04-01

Many image transmission/storage applications requiring some form of data compression additionally require that the decoded image be an exact replica of the original. Lossless image coding algorithms meet this requirement by generating a decoded image that is numerically identical to the original. Several lossless coding techniques are modifications of well-known lossy schemes, whereas others are new. Traditional Markov-based models and newer arithmetic coding techniques are applied to predictive coding, bit plane processing, and lossy plus residual coding. Generally speaking, the compression ratio offered by these techniques are in the area of 1.6:1 to 3:1 for 8-bit pictorial images. Compression ratios for 12-bit radiological images approach 3:1, as these images have less detailed structure, and hence, their higher pel correlation leads to a greater removal of image redundancy.

Nepheline and sodalite in a barred olivine chondrule from the Allende meteorite

NASA Technical Reports Server (NTRS)

Lumpkin, G. R.

1980-01-01

The discovery of nepheline and sodalite in association with glass in a barred olivine chondrule from the Allende C3V meteorite is reported, and the possible origin of the minerals is discussed. Scanning electron microscope/energy dispersive analysis indicates that the major minerals of the chondrule are olivine, bronzite and chromite, with olivine bars separated by glass of nearly pure plagioclase composition. The olivine is observed to have a composition richer in Fe than that predicted from olivine-liquid equilibria, indicating, along with the presence of plagioclase glass and small amounts of subcalcic diopside, the nonequilibrium crystallization of the barred olivine chondrule. The textural features of the chondrule are consistent with a liquid origin for nepheline and sodalite from the chondrule-forming liquid under nonequilibrium conditions.

Latest COBE results, large-scale data, and predictions of inflation

NASA Technical Reports Server (NTRS)

Kashlinsky, A.

1992-01-01

One of the predictions of the inflationary scenario of cosmology is that the initial spectrum of primordial density fluctuations (PDFs) must have the Harrison-Zeldovich (HZ) form. Here, in order to test the inflationary scenario, predictions of the microwave background radiation (MBR) anisotropies measured by COBE are computed based on large-scale data for the universe and assuming Omega-1 and the HZ spectrum on large scales. It is found that the minimal scale where the spectrum can first enter the HZ regime is found, constraining the power spectrum of the mass distribution to within the bias factor b. This factor is determined and used to predict parameters of the MBR anisotropy field. For the spectrum of PDFs that reaches the HZ regime immediately after the scale accessible to the APM catalog, the numbers on MBR anisotropies are consistent with the COBE detections and thus the standard inflation can indeed be considered a viable theory for the origin of the large-scale structure in the universe.

78 FR 8226 - Proposed Collection; Comment Request for Form 1099-OID

Federal Register 2010, 2011, 2012, 2013, 2014

2013-02-05

... Form 1099-OID, Original Issue Discount. DATES: Written comments should be received on or before April 8... . SUPPLEMENTARY INFORMATION: Title: Original Issue Discount. OMB Number: 1545-0117. Form Number: 1099-OID. Abstract: Form 1099-OID is used for reporting original issue discount as required by section 6049 of the...

The interhemispheric CA1 circuit governs rapid generalisation but not fear memory.

PubMed

Zhou, Heng; Xiong, Gui-Jing; Jing, Liang; Song, Ning-Ning; Pu, De-Lin; Tang, Xun; He, Xiao-Bing; Xu, Fu-Qiang; Huang, Jing-Fei; Li, Ling-Jiang; Richter-Levin, Gal; Mao, Rong-Rong; Zhou, Qi-Xin; Ding, Yu-Qiang; Xu, Lin

2017-12-19

Encoding specificity theory predicts most effective recall by the original conditions at encoding, while generalization endows recall flexibly under circumstances which deviate from the originals. The CA1 regions have been implicated in memory and generalization but whether and which locally separated mechanisms are involved is not clear. We report here that fear memory is quickly formed, but generalization develops gradually over 24 h. Generalization but not fear memory is impaired by inhibiting ipsilateral (ips) or contralateral (con) CA1, and by optogenetic silencing of the ipsCA1 projections onto conCA1. By contrast, in vivo fEPSP recordings reveal that ipsCA1-conCA1 synaptic efficacy is increased with delay over 24 h when generalization is formed but it is unchanged if generalization is disrupted. Direct excitation of ipsCA1-conCA1 synapses using chemogenetic hM3Dq facilitates generalization formation. Thus, rapid generalization is an active process dependent on bilateral CA1 regions, and encoded by gradual synaptic learning in ipsCA1-conCA1 circuit.

Can nuclear physics explain the anomaly observed in the internal pair production in the Beryllium-8 nucleus?

NASA Astrophysics Data System (ADS)

Zhang, Xilin; Miller, Gerald A.

2017-10-01

Recently the experimentalists in Krasznahorkay (2016) [1] announced observing an unexpected enhancement of the e+-e- pair production signal in one of the 8Be nuclear transitions. The subsequent studies have been focused on possible explanations based on introducing new types of particle. In this work, we improve the nuclear physics modeling of the reaction by studying the pair emission anisotropy and the interferences between different multipoles in an effective field theory inspired framework, and examine their possible relevance to the anomaly. The connection between the previously measured on-shell photon production and the pair production in the same nuclear transitions is established. These improvements, absent in the original experimental analysis, should be included in extracting new particle's properties from the experiment of this type. However, the improvements can not explain the anomaly. We then explore the nuclear transition form factor as a possible origin of the anomaly, and find the required form factor to be unrealistic for the 8Be nucleus. The reduction of the anomaly's significance by simply rescaling our predicted event count is also investigated.

Comparison of the Computational Efficiency of the Original Versus Reformulated High-Fidelity Generalized Method of Cells

NASA Technical Reports Server (NTRS)

Arnold, Steven M; Bednarcyk, Brett; Aboydi, Jacob

2004-01-01

The High-Fidelity Generalized Method of Cells (HFGMC) micromechanics model has recently been reformulated by Bansal and Pindera (in the context of elastic phases with perfect bonding) to maximize its computational efficiency. This reformulated version of HFGMC has now been extended to include both inelastic phases and imperfect fiber-matrix bonding. The present paper presents an overview of the HFGMC theory in both its original and reformulated forms and a comparison of the results of the two implementations. The objective is to establish the correlation between the two HFGMC formulations and document the improved efficiency offered by the reformulation. The results compare the macro and micro scale predictions of the continuous reinforcement (doubly-periodic) and discontinuous reinforcement (triply-periodic) versions of both formulations into the inelastic regime, and, in the case of the discontinuous reinforcement version, with both perfect and weak interfacial bonding. The results demonstrate that identical predictions are obtained using either the original or reformulated implementations of HFGMC aside from small numerical differences in the inelastic regime due to the different implementation schemes used for the inelastic terms present in the two formulations. Finally, a direct comparison of execution times is presented for the original formulation and reformulation code implementations. It is shown that as the discretization employed in representing the composite repeating unit cell becomes increasingly refined (requiring a larger number of sub-volumes), the reformulated implementation becomes significantly (approximately an order of magnitude at best) more computationally efficient in both the continuous reinforcement (doubly-periodic) and discontinuous reinforcement (triply-periodic) cases.

Quantitation of cholesterol incorporation into extruded lipid bilayers.

PubMed

Ibarguren, Maitane; Alonso, Alicia; Tenchov, Boris G; Goñi, Felix M

2010-09-01

Cholesterol incorporation into lipid bilayers, in the form of multilamellar vesicles or extruded large unilamellar vesicles, has been quantitated. To this aim, the cholesterol contents of bilayers prepared from phospholipid:cholesterol mixtures 33-75 mol% cholesterol have been measured and compared with the original mixture before lipid hydration. There is a great diversity of cases, but under most conditions the actual cholesterol proportion present in the extruded bilayers is much lower than predicted. A quantitative analysis of the vesicles is thus required before any experimental study is undertaken. 2010 Elsevier B.V. All rights reserved.

Measures of Residual Risk with Connections to Regression, Risk Tracking, Surrogate Models, and Ambiguity

DTIC Science & Technology

2015-04-15

manage , predict, and mitigate the risk in the original variable. Residual risk can be exemplified as a quantification of the improved... the random variable of interest is viewed in concert with a related random vector that helps to manage , predict, and mitigate the risk in the original... manage , predict and mitigate the risk in the original variable. Residual risk can be exemplified as a quantification of the improved situation faced

Stochastic does not equal ad hoc. [theories of lunar origin

NASA Technical Reports Server (NTRS)

Hartmann, W. K.

1984-01-01

Some classes of influential events in solar system history are class-predictable but not event-predictable. Theories of lunar origin should not ignore class-predictable stochastic events. Impacts and close encounters with large objects during planet formation are class-predictable. These stochastic events, such as large impacts that triggered ejection of Earth-mantle material into a circum-Earth cloud, should not be rejected as ad hoc. A way to deal with such events scientifically is to investigate their consequences; if it can be shown that they might produce the Moon, they become viable concepts in theories of lunar origin.

The Belterra Clay: The Last Terrestrial Connection Between the Brazilian Shield and the Guiana Shield

NASA Astrophysics Data System (ADS)

Campbell, K.

2016-12-01

The Belterra Clay is a sedimentary deposit that covers much of the eastern Amazon Basin in Brazil. It is notable in forming a very flat plain that occurs on both sides of the Amazon River, the Tapajos River, the Xingu River, and many smaller, tributary rivers east of 56° 32' W. The origin of the Belterra Clay is very controversial, with proponents of both allochthonous and autochthonous means of formation. There is little agreement as to its age. The fact that it occurs on both sides of the Amazon River indicates that its origin predates the formation of the modern Amazon River system, the timing of origin of which is itself highly controversial, with age estimates given for the river system formation that extend from the late Miocene, or 10 mya, to the late Pleistocene. From the time of origin of the Belterra Clay deposit until the modern Amazon River evolved, it formed an unbroken, terrestrial connection between the Brazilian Shield to the south and the Guiana Shield to the north, as well as east-west connections across what are today major river valleys, such as the Tapajos River and Xingu River. The formation and later severing of this once unbroken plain are predicted to have had major impacts on the distribution and evolutionary pathways of biotas inhabiting the region as once disparate communities were joined and later separated once again. Molecular clock ages for sister taxa north and south of the Amazon River have the potential of dating the time of formation of the Amazon River.

Origin and Diversity of Planetary Systems

NASA Technical Reports Server (NTRS)

Lissauer, Jack J.; Young, Richard E. (Technical Monitor)

1997-01-01

Modern theories of star and planet formation, which are based upon observations of the Solar System and of young stars and their environments, predict that rocky planets should form around most single stars, although it is possible that most such planets are lost to orbital decay within the protoplanetary disk. The frequency of formation of gas giant planets is more difficult to predict theoretically. Terrestrial planets are believed to grow via pairwise accretion until the spacing of planetary orbits becomes large enough that the configuration is stable for the age of the system. Giant planets begin their growth like terrestrial planets, but they become massive enough that they are able to accumulate substantial amounts of gas before the protoplanetary disk dissipates. Models for the formation of the giant planets found in recent radial velocity searches are discussed.

Voyager Saturnian ring measurements and the early history of the solar system

NASA Technical Reports Server (NTRS)

Alfven, H.; Axnaes, I.; Brenning, N.; Lindquist, P. A.

1985-01-01

The mass distribution in the Saturnian ring system is investigated and compared with predictions from plasma cosmogony. According to this theory, the matter in the rings was once a magnetized plasma, in which gravitation is balanced by the centrifugal and electromagnetic forces. As the plasma is neutralized, the electromagnetic forces disappear and the matter falls in to 2/3 of the original saturnocentric distance. This causes the cosmogonic shadow effect, demonstrated for the large scale structure of the Saturnian ring system. It is shown that many structures of the present ring system can be understood as shadows and antishadows of cosmogonic origin. These appear in the form of double rings centered around a position a factor 0.64 (slightly 2/3) closer to Saturn than the causing feature. Voyager data agree with an accuracy 1%.

Origins of Secure Base Script Knowledge and the Developmental Construction of Attachment Representations.

PubMed

Waters, Theodore E A; Ruiz, Sarah K; Roisman, Glenn I

2017-01-01

Increasing evidence suggests that attachment representations take at least two forms: a secure base script and an autobiographical narrative of childhood caregiving experiences. This study presents data from the first 26 years of the Minnesota Longitudinal Study of Risk and Adaptation (N = 169), examining the developmental origins of secure base script knowledge in a high-risk sample and testing alternative models of the developmental sequencing of the construction of attachment representations. Results demonstrated that secure base script knowledge was predicted by observations of maternal sensitivity across childhood and adolescence. Furthermore, findings suggest that the construction of a secure base script supports the development of a coherent autobiographical representation of childhood attachment experiences with primary caregivers by early adulthood. © 2016 The Authors. Child Development © 2016 Society for Research in Child Development, Inc.

Dissolved-solids sources, loads, yields, and concentrations in streams of the conterminous United States

USGS Publications Warehouse

Anning, David W.; Flynn, Marilyn E.

2014-01-01

Results from the trend analysis and from the SPARROW model indicate that, compared to monitoring stations with no trends or decreasing trends, stations with increasing trends are associated with a smaller percentage of the predicted dissolved-solids load originating from geologic sources, and a larger percentage originating from urban lands and road deicers. Conversely, compared to stations with increasing trends or no trends, stations with decreasing trends have a larger percentage of the predicted dissolved-solids load originating from geologic sources and a smaller percentage originating from urban lands and road deicers. Stations with decreasing trends also have larger percentages of predicted dissolved-solids load originating from cultivated lands and pasture lands, compared to stations with increasing trends or no trends.

A simplified constitutive model for predicting shape memory polymers deformation behavior

NASA Astrophysics Data System (ADS)

Li, Yunxin; Guo, Siu-Siu; He, Yuhao; Liu, Zishun

2015-12-01

Shape memory polymers (SMPs) can keep a temporary shape after pre-deformation at a higher temperature and subsequent cooling. When they are reheated, their original shapes can be recovered. Such special characteristics of SMPs make them widely used in aerospace structures, biomedical devices, functional textiles and other devices. Increasing usefulness of SMPs motivates us to further understand their thermomechanical properties and deformation behavior, of which the development of appropriate constitutive models for SMPs is imperative. There is much work in literatures that address constitutive models of the thermo-mechanical coupling in SMPs. However, due to their complex forms, it is difficult to apply these constitutive models in the real world. In this paper, a three-element model with simple form is proposed to investigate the thermo-mechanical small strain (within 10%) behavior of polyurethane under uniaxial tension. Two different cases of heated recovery are considered: (1) unconstrained free strain recovery and (2) stress recovery under full constraint at a strain level fixed during low temperature unloading. To validate the model, simulated and predicted results are compared with Tobushi's experimental results and good agreement can be observed.

Kalman filtered MR temperature imaging for laser induced thermal therapies.

PubMed

Fuentes, D; Yung, J; Hazle, J D; Weinberg, J S; Stafford, R J

2012-04-01

The feasibility of using a stochastic form of Pennes bioheat model within a 3-D finite element based Kalman filter (KF) algorithm is critically evaluated for the ability to provide temperature field estimates in the event of magnetic resonance temperature imaging (MRTI) data loss during laser induced thermal therapy (LITT). The ability to recover missing MRTI data was analyzed by systematically removing spatiotemporal information from a clinical MR-guided LITT procedure in human brain and comparing predictions in these regions to the original measurements. Performance was quantitatively evaluated in terms of a dimensionless L(2) (RMS) norm of the temperature error weighted by acquisition uncertainty. During periods of no data corruption, observed error histories demonstrate that the Kalman algorithm does not alter the high quality temperature measurement provided by MR thermal imaging. The KF-MRTI implementation considered is seen to predict the bioheat transfer with RMS error < 4 for a short period of time, ∆t < 10 s, until the data corruption subsides. In its present form, the KF-MRTI method currently fails to compensate for consecutive for consecutive time periods of data loss ∆t > 10 sec.

Empirical evaluation of the uncanny valley hypothesis fails to confirm the predicted effect of motion.

PubMed

Piwek, Lukasz; McKay, Lawrie S; Pollick, Frank E

2014-03-01

The uncanny valley hypothesis states that the acceptability of an artificial character will not increase linearly in relation to its likeness to human form. Instead, after an initial rise in acceptability there will be a pronounced decrease when the character is similar, but not identical to human form (Mori, 1970/2012). Moreover, it has been claimed but never directly tested that movement would accentuate this dip and make moving characters less acceptable. We used a number of full-body animated computer characters along with a parametrically defined motion set to examine the effect of motion quality on the uncanny valley. We found that improving the motion quality systematically improved the acceptability of the characters. In particular, the character classified in the deepest location of the uncanny valley became more acceptable when it was animated. Our results showed that although an uncanny valley was found for static characters, the deepening of the valley with motion, originally predicted by Mori (1970/2012), was not obtained. Copyright © 2013 Elsevier B.V. All rights reserved.

Leaf and life history traits predict plant growth in a green roof ecosystem.

PubMed

Lundholm, Jeremy; Heim, Amy; Tran, Stephanie; Smith, Tyler

2014-01-01

Green roof ecosystems are constructed to provide services such as stormwater retention and urban temperature reductions. Green roofs with shallow growing media represent stressful conditions for plant survival, thus plants that survive and grow are important for maximizing economic and ecological benefits. While field trials are essential for selecting appropriate green roof plants, we wanted to determine whether plant leaf traits could predict changes in abundance (growth) to provide a more general framework for plant selection. We quantified leaf traits and derived life-history traits (Grime's C-S-R strategies) for 13 species used in a four-year green roof experiment involving five plant life forms. Changes in canopy density in monocultures and mixtures containing one to five life forms were determined and related to plant traits using multiple regression. We expected traits related to stress-tolerance would characterize the species that best grew in this relatively harsh setting. While all species survived to the end of the experiment, canopy species diversity in mixture treatments was usually much lower than originally planted. Most species grew slower in mixture compared to monoculture, suggesting that interspecific competition reduced canopy diversity. Species dominant in mixture treatments tended to be fast-growing ruderals and included both native and non-native species. Specific leaf area was a consistently strong predictor of final biomass and the change in abundance in both monoculture and mixture treatments. Some species in contrasting life-form groups showed compensatory dynamics, suggesting that life-form mixtures can maximize resilience of cover and biomass in the face of environmental fluctuations. This study confirms that plant traits can be used to predict growth performance in green roof ecosystems. While rapid canopy growth is desirable for green roofs, maintenance of species diversity may require engineering of conditions that favor less aggressive species.

Air flow quality analysis of modenas engine exhaust system

NASA Astrophysics Data System (ADS)

Shahriman A., B.; Mohamad Syafiq A., K.; Hashim, M. S. M.; Razlan, Zuradzman M.; Khairunizam W. A., N.; Hazry, D.; Afendi, Mohd; Daud, R.; Rahman, M. D. Tasyrif Abdul; Cheng, E. M.; Zaaba, S. K.

2017-09-01

The simulation process being conducted to determine the air flow effect between the original exhaust system and modified exhaust system. The simulations are conducted to investigate the flow distribution of exhaust gases that will affect the performance of the engine. The back flow pressure in the original exhaust system is predicted toward this simulation. The design modification to the exhaust port, exhaust pipe, and exhaust muffler has been done during this simulation to reduce the back flow effect. The new designs are introduced by enlarging the diameter of the exhaust port, enlarge the diameter of the exhaust pipe and created new design for the exhaust muffler. Based on the result obtained, there the pulsating flow form at the original exhaust port that will increase the velocity and resulting the back pressure occur. The result for new design of exhaust port, the velocity is lower at the valve guide in the exhaust port. New design muffler shows that the streamline of the exhaust flow move smoothly compare to the original muffler. It is proved by using the modification exhaust system, the back pressure are reduced and the engine performance can be improve.

Metal enrichment in the Fermi bubbles as a probe of their origin

NASA Astrophysics Data System (ADS)

Inoue, Yoshiyuki; Nakashima, Shinya; Tahara, Masaya; Kataoka, Jun; Totani, Tomonori; Fujita, Yutaka; Sofue, Yoshiaki

2015-06-01

The Fermi bubbles are gigantic gamma-ray structures in our Galaxy. The physical origin of the bubbles is still under debate. The leading scenarios can be divided into two categories. One is nuclear star-forming activity similar to extragalactic starburst galaxies and the other is past active galactic nucleus (AGN)-like activity of the Galactic center supermassive black hole. In this letter, we propose that metal abundance measurements will provide an important clue to probe their origin. Based on a simple spherically symmetric bubble model, we find that the generated metallicity and abundance patterns of the bubbles' gas strongly depend on assumed star formation or AGN activities. Star formation scenarios predict higher metallicities and abundance ratios of [O/Fe] and [Ne/Fe] than AGN scenarios do because of supernovae ejecta. Furthermore, the resultant abundance depends on the gamma-ray emission process because different mass injection histories are required for the different gamma-ray emission processes due to the acceleration and cooling time scales of non-thermal particles. Future X-ray missions such as ASTRO-H and Athena will give a clue to probe the origin of the bubbles through abundance measurements with their high energy resolution instruments.

ICAN/PART: Particulate composite analyzer, user's manual and verification studies

NASA Technical Reports Server (NTRS)

Goldberg, Robert K.; Murthy, Pappu L. N.; Mital, Subodh K.

1996-01-01

A methodology for predicting the equivalent properties and constituent microstresses for particulate matrix composites, based on the micromechanics approach, is developed. These equations are integrated into a computer code developed to predict the equivalent properties and microstresses of fiber reinforced polymer matrix composites to form a new computer code, ICAN/PART. Details of the flowchart, input and output for ICAN/PART are described, along with examples of the input and output. Only the differences between ICAN/PART and the original ICAN code are described in detail, and the user is assumed to be familiar with the structure and usage of the original ICAN code. Detailed verification studies, utilizing dim dimensional finite element and boundary element analyses, are conducted in order to verify that the micromechanics methodology accurately models the mechanics of particulate matrix composites. ne equivalent properties computed by ICAN/PART fall within bounds established by the finite element and boundary element results. Furthermore, constituent microstresses computed by ICAN/PART agree in average sense with results computed using the finite element method. The verification studies indicate that the micromechanics programmed into ICAN/PART do indeed accurately model the mechanics of particulate matrix composites.

Origin Replication Complex Binding, Nucleosome Depletion Patterns, and a Primary Sequence Motif Can Predict Origins of Replication in a Genome with Epigenetic Centromeres

PubMed Central

Tsai, Hung-Ji; Baller, Joshua A.; Liachko, Ivan; Koren, Amnon; Burrack, Laura S.; Hickman, Meleah A.; Thevandavakkam, Mathuravani A.; Rusche, Laura N.

2014-01-01

ABSTRACT Origins of DNA replication are key genetic elements, yet their identification remains elusive in most organisms. In previous work, we found that centromeres contain origins of replication (ORIs) that are determined epigenetically in the pathogenic yeast Candida albicans. In this study, we used origin recognition complex (ORC) binding and nucleosome occupancy patterns in Saccharomyces cerevisiae and Kluyveromyces lactis to train a machine learning algorithm to predict the position of active arm (noncentromeric) origins in the C. albicans genome. The model identified bona fide active origins as determined by the presence of replication intermediates on nondenaturing two-dimensional (2D) gels. Importantly, these origins function at their native chromosomal loci and also as autonomously replicating sequences (ARSs) on a linear plasmid. A “mini-ARS screen” identified at least one and often two ARS regions of ≥100 bp within each bona fide origin. Furthermore, a 15-bp AC-rich consensus motif was associated with the predicted origins and conferred autonomous replicating activity to the mini-ARSs. Thus, while centromeres and the origins associated with them are epigenetic, arm origins are dependent upon critical DNA features, such as a binding site for ORC and a propensity for nucleosome exclusion. PMID:25182328

Forming a Moon with an Earth-like composition via a giant impact.

PubMed

Canup, Robin M

2012-11-23

In the giant impact theory, the Moon formed from debris ejected into an Earth-orbiting disk by the collision of a large planet with the early Earth. Prior impact simulations predict that much of the disk material originates from the colliding planet. However, Earth and the Moon have essentially identical oxygen isotope compositions. This has been a challenge for the impact theory, because the impactor's composition would have likely differed from that of Earth. We simulated impacts involving larger impactors than previously considered. We show that these can produce a disk with the same composition as the planet's mantle, consistent with Earth-Moon compositional similarities. Such impacts require subsequent removal of angular momentum from the Earth-Moon system through a resonance with the Sun as recently proposed.

First measurement of the 34S(p ,γ )35Cl reaction rate through indirect methods for presolar nova grains

NASA Astrophysics Data System (ADS)

Gillespie, S. A.; Parikh, A.; Barton, C. J.; Faestermann, T.; José, J.; Hertenberger, R.; Wirth, H.-F.; de Séréville, N.; Riley, J. E.; Williams, M.

2017-08-01

Sulphur isotopic ratio measurements may help to establish the astrophysical sites in which certain presolar grains were formed. Nova model predictions of the 34S/32S ratio are, however, unreliable due to the lack of an experimental 34S(p ,γ )35Cl reaction rate. To this end, we have measured the 34S(3He,d )35Cl reaction at 20 MeV using a high resolution quadrupole-dipole-dipole-dipole magnetic spectrograph. Twenty-two levels over 6.2 MeV

Seasonal Extratropical Storm Activity Potential Predictability and its Origins during the Cold Seasons

NASA Astrophysics Data System (ADS)

Pingree-Shippee, K. A.; Zwiers, F. W.; Atkinson, D. E.

2016-12-01

Extratropical cyclones (ETCs) often produce extreme hazardous weather conditions, such as high winds, blizzard conditions, heavy precipitation, and flooding, all of which can have detrimental socio-economic impacts. The North American east and west coastal regions are both strongly influenced by ETCs and, subsequently, land-based, coastal, and maritime economic sectors in Canada and the USA all experience strong adverse impacts from extratropical storm activity from time to time. Society would benefit if risks associated with ETCs and storm activity variability could be reliably predicted for the upcoming season. Skillful prediction would enable affected sectors to better anticipate, prepare for, manage, and respond to storm activity variability and the associated risks and impacts. In this study, the potential predictability of seasonal variations in extratropical storm activity is investigated using analysis of variance to provide quantitative and geographical observational evidence indicative of whether it may be possible to predict storm activity on the seasonal timescale. This investigation will also identify origins of the potential predictability using composite analysis and large-scale teleconnections (Southern Oscillation, Pacific Decadal Oscillation, and North Atlantic Oscillation), providing the basis upon which seasonal predictions can be developed. Seasonal potential predictability and its origins are investigated for the cold seasons (OND, NDJ, DJF, JFM) during the 1979-2015 time period using daily mean sea level pressure, absolute pressure tendency, and 10-m wind speed from the ECMWF ERA-Interim reanalysis as proxies for extratropical storm activity. Results indicate potential predictability of seasonal variations in storm activity in areas strongly influenced by ETCs and with origins in the investigated teleconnections. For instance, the North Pacific storm track has considerable potential predictability and with notable origins in the SO and PDO.

Origin, Bulk Chemical Composition and Physical Structure of the Galilean Satellites of Jupiter: A Post-Galileo Analysis

NASA Technical Reports Server (NTRS)

Prentice, A. J. R.

1999-01-01

The origin of Jupiter and the Galilean satellite system is examined in the light of the new data that has been obtained by the NASA Galileo Project. In particular, special attention is given to a theory of satellite origin which was put forward at the start of the Galileo Mission and on the basis of which several predictions have now been proven successful. These predictions concern the chemical composition of Jupiter's atmosphere and the physical structure of the satellites. According to the proposed theory of satellite origin, each of the Galilean satellites formed by chemical condensation and gravitational accumulation of solid grains within a concentric family of orbiting gas rings. These rings were cast off equatorially by the rotating proto-Jovian cloud (PJC which contracted gravitationally to form Jupiter some 4 1/2 billion years ago. The PJC formed from the gas and grains left over from the gas ring that had been shed at Jupiter's orbit by the contracting proto-solar cloud (PSC Supersonic turbulent convection provides the means for shedding discrete gas rings. The temperatures T (sub n) of the system of gas rings shed by the PSC and PJC vary with their respective mean orbital radii R (sub n) (n = 0, 1,2,...) according as T (sub n) proportional to R (sub n) (exp -0.9). If the planet Mercury condenses at 1640 K, so accounting for the high density of that planet via a process of chemical fractionation between iron and silicates, then T (sub n) at Jupiter's orbit is 158 K. Only 35% of the water vapour condenses out. Thus fractionation between rock and ice, together with an enhancement in the abundance of solids relative to gas which takes place through gravitational sedimentation of solids onto the mean orbit of the gas ring, ensures nearly equal proportions of rock and ice in each of Ganymede and Callisto. Io and Europa condense above the H20 ice point and consist solely of hydrated rock (h-rock). The Ganymedan condensate consists of h-rock and H20 ice. For Callisto, NH3 ice makes up -5% of the condensate mass next to h-rock (approximately 50%) and H2O ice (approximately 45%). Detailed thermal and structural models for each of Europa, Ganymede and Callisto are constructed on the basis of the above initial bulk chemical compositions. For Europa (E), a predicted 2-zone model consisting of a dehydrated rock core of mass 0.912 M (sub E) and a 150 km thick frozen mantle of salty H2O yields a moment-of-inertia coefficient which matches the Galileo Orbiter gravity measurement. For Ganymede (G), a 3-zone model possessing an inner core of solid FeS and mass approximately 0.116 M (sub G), and an outer H2O ice mantle of mass approximately 0.502 M (sub G) is needed to explain the gravity data. Ganymede's native magnetic field was formed by thermoremanent magnetization of Fe3O4. A new Callisto (C) model is proposed consisting of a core of mass 0.826 M (sub C) containing a uniform mixture of h-rock (60% by mass) and H2O and NH3 ices, and capped by a mantle of pure ice. This model may have the capacity to yield a thin layer of liquid NH3 (raised dot) 2H2O at the core boundary, in line with Galileo's discovery of an induced magnetic field.

Beta Dips in the Gaia Era: Simulation Predictions of the Galactic Velocity Anisotropy Parameter (β)

NASA Astrophysics Data System (ADS)

Loebman, Sarah; Valluri, Monica; Hattori, Kohei; Debattista, Victor P.; Bell, Eric F.; Stinson, Greg; Christensen, Charlotte; Brooks, Alyson; Quinn, Thomas R.; Governato, Fabio

2017-01-01

Milky Way (MW) science has entered a new era with the advent of Gaia. Combined with spectroscopic survey data, we have newfound access to full 6D phase space information for halo stars. Such data provides an invaluable opportunity to assess kinematic trends as a function of radius and confront simulations with these observations to draw insight about our merger history. I will discuss predictions for the velocity anisotropy parameter, β, drawn from three suites of state-of-the-art cosmological N-body and N-body+SPH MW-like simulations. On average, all three suites predict a monotonically increasing value of β that is radially biased, and beyond 10 kpc, β > 0.5. I will also discuss β as a function of time for individual simulated galaxies. I will highlight when "dips" in β form, the severity (the rarity of β < 0), origin (in situ versus accreted halo), and persistence of these dips. Thereby, I present a cohesive set of predictions of β from simulations for comparison to forthcoming observations.

A comparison between Peng-Robinson and Soave-Redlich-Kwong cubic equations of state from modification perspective

NASA Astrophysics Data System (ADS)

Ghanbari, Mehdi; Ahmadi, Mahdi; Lashanizadegan, Asghar

2017-06-01

The Cubic Equations of State (CEOSs) are the most important tools in PVT calculations due to their simplicity in use and their extrapolative abilities to condition well outside their correlation ranges. Peng-Robinson (PR) and Soave-Redlich-Kwong (SRK) are most successful in the CEOSs which have repeatedly been modified in order to improve their accuracy in wider ranges of temperature and pressure. Unfortunately, most of modifications carried out on these EOSs have no adequate justification for selecting either of these as the basic starting point for the modifications. In this paper, PR and SRK EOSs were critically compared with each other using some new features of their subcritical and supercritical results. For this purpose, the CEOSs were assessed using comprehensive tests of the PVT calculations in the vapor-liquid equilibrium (for pure hydrocarbons over a wide range of acentric factor values: Methane, Ethane Propane, Butane, Heptane and Nonane) and Joule-Thomson Inversion Curves' (JTICs) predictions (for compounds which have reliable JTICs data: Methane, Ethane, Ethylene, Nitrogen, Oxygen, Argon and Carbon dioxide) in subcritical and supercritical regions, respectively. The results indicated that the PR EOS by using any of realistic α-function forms will never be able to accurately predict the JTICs in full span. On the other hand, the subcritical results revealed that the great success of the PR CEOS in predicting liquid phase density is only due to its function in shifting the results of the SRK CEOS to the lower values with the same curve trend. In addition, the Patel and Teja's (PT) EOS, has been reevaluated and the results showed that most of the defects of PR EOS still remain. This article suggests that in order to develop CEOSs, the original SRK EOS is a better candidate than original and alternative forms of PR EOS.

An understanding of modified release matrix tablets behavior during drug dissolution as the key for prediction of pharmaceutical product performance - case study of multimodal characterization of quetiapine fumarate tablets.

PubMed

Kulinowski, Piotr; Woyna-Orlewicz, Krzysztof; Rappen, Gerd-Martin; Haznar-Garbacz, Dorota; Węglarz, Władysław P; Dorożyński, Przemysław P

2015-04-30

Motivation for the study was the lack of dedicated and effective research and development (R&D) in vitro methods for oral, generic, modified release formulations. The purpose of the research was to assess multimodal in vitro methodology for further bioequivalence study risk minimization. Principal results of the study are as follows: (i) Pharmaceutically equivalent quetiapine fumarate extended release dosage form of Seroquel XR was developed using a quality by design/design of experiment (QbD/DoE) paradigm. (ii) The developed formulation was then compared with originator using X-ray microtomography, magnetic resonance imaging and texture analysis. Despite similarity in terms of compendial dissolution test, developed and original dosage forms differed in micro/meso structure and consequently in mechanical properties. (iii) These differences were found to be the key factors of failure of biorelevant dissolution test using the stress dissolution apparatus. Major conclusions are as follows: (i) Imaging methods allow to assess internal features of the hydrating extended release matrix and together with the stress dissolution test allow to rationalize the design of generic formulations at the in vitro level. (ii) Technological impact on formulation properties e.g., on pore formation in hydrating matrices cannot be overlooked when designing modified release dosage forms. Copyright © 2015 Elsevier B.V. All rights reserved.

Parenting, relational aggression, and borderline personality features: associations over time in a Russian longitudinal sample.

PubMed

Nelson, David A; Coyne, Sarah M; Swanson, Savannah M; Hart, Craig H; Olsen, Joseph A

2014-08-01

Crick, Murray-Close, and Woods (2005) encouraged the study of relational aggression as a developmental precursor to borderline personality features in children and adolescents. A longitudinal study is needed to more fully explore this association, to contrast potential associations with physical aggression, and to assess generalizability across various cultural contexts. In addition, parenting is of particular interest in the prediction of aggression or borderline personality disorder. Early aggression and parenting experiences may differ in their long-term prediction of aggression or borderline features, which may have important implications for early intervention. The currrent study incorporated a longitudinal sample of preschool children (84 boys, 84 girls) living in intact, two-parent biological households in Voronezh, Russia. Teachers provided ratings of children's relational and physical aggression in preschool. Mothers and fathers also self-reported their engagement in authoritative, authoritarian, permissive, and psychological controlling forms of parenting with their preschooler. A decade later, 70.8% of the original child participants consented to a follow-up study in which they completed self-reports of relational and physical aggression and borderline personality features. The multivariate results of this study showed that preschool relational aggression in girls predicted adolescent relational aggression. Preschool aversive parenting (i.e., authoritarian, permissive, and psychologically controlling forms) significantly predicted aggression and borderline features in adolescent females. For adolescent males, preschool authoritative parenting served as a protective factor against aggression and borderline features, whereas authoritarian parenting was a risk factor for later aggression.

Chance of Necessity: Modeling Origins of Life

NASA Technical Reports Server (NTRS)

Pohorille, Andrew

2006-01-01

The fundamental nature of processes that led to the emergence of life has been a subject of long-standing debate. One view holds that the origin of life is an event governed by chance, and the result of so many random events is unpredictable. This view was eloquently expressed by Jacques Monod in his book Chance or Necessity. In an alternative view, the origin of life is considered a deterministic event. Its details need not be deterministic in every respect, but the overall behavior is predictable. A corollary to the deterministic view is that the emergence of life must have been determined primarily by universal chemistry and biochemistry rather than by subtle details of environmental conditions. In my lecture I will explore two different paradigms for the emergence of life and discuss their implications for predictability and universality of life-forming processes. The dominant approach is that the origin of life was guided by information stored in nucleic acids (the RNA World hypothesis). In this view, selection of improved combinations of nucleic acids obtained through random mutations drove evolution of biological systems from their conception. An alternative hypothesis states that the formation of protocellular metabolism was driven by non-genomic processes. Even though these processes were highly stochastic the outcome was largely deterministic, strongly constrained by laws of chemistry. I will argue that self-replication of macromolecules was not required at the early stages of evolution; the reproduction of cellular functions alone was sufficient for self-maintenance of protocells. In fact, the precise transfer of information between successive generations of the earliest protocells was unnecessary and could have impeded the discovery of cellular metabolism. I will also show that such concepts as speciation and fitness to the environment, developed in the context of genomic evolution also hold in the absence of a genome.

Concerning the Motion of FTEs and Attendant Signatures

NASA Technical Reports Server (NTRS)

Sibeck, David G.

2010-01-01

We employ the Cooling et al. [2001] model to predict the location, orientation, and motion of flux transfer events (FTEs) generated along finite length component and anti parallel reconnection lines for typical solar wind plasma conditions and various interplanetary magnetic field (IMF) orientations in the plane perpendicular to the SunEarth line at the solstices and equinoxes. For duskward and northward or southward IMF orientations, events formed by component reconnection originate along reconnection curves passing through the sub solar point that tilt from southern dawn to northern dusk. They maintain this orientation as they move either northward into the northern dawn quadrant or southward into the southern dusk quadrant. By contrast, events formed by antiparallel reconnection originate along reconnection curves running from northern dawn to southern dusk in the southern dawn and northern dusk quadrants and maintain these orientations as they move anti sunward into both these quadrants. Although both the component and antiparallel reconnection models can explain previously reported event orientations on the southern dusk magnetopause during intervals of northward and dawn ward IMF orientation, only the component model explains event occurrence near the subsolar magnetopause during intervals when the IMF does not point due southward.

Two fundamental questions about protein evolution.

PubMed

Penny, David; Zhong, Bojian

2015-12-01

Two basic questions are considered that approach protein evolution from different directions; the problems arising from using Markov models for the deeper divergences, and then the origin of proteins themselves. The real problem for the first question (going backwards in time) is that at deeper phylogenies the Markov models of sequence evolution must lose information exponentially at deeper divergences, and several testable methods are suggested that should help resolve these deeper divergences. For the second question (coming forwards in time) a problem is that most models for the origin of protein synthesis do not give a role for the very earliest stages of the process. From our knowledge of the importance of replication accuracy in limiting the length of a coding molecule, a testable hypothesis is proposed. The length of the code, the code itself, and tRNAs would all have prior roles in increasing the accuracy of RNA replication; thus proteins would have been formed only after the tRNAs and the length of the triplet code are already formed. Both questions lead to testable predictions. Copyright © 2014 Elsevier B.V. and Société Française de Biochimie et Biologie Moléculaire (SFBBM). All rights reserved.

Least-Squares Support Vector Machine Approach to Viral Replication Origin Prediction

PubMed Central

Cruz-Cano, Raul; Chew, David S.H.; Kwok-Pui, Choi; Ming-Ying, Leung

2010-01-01

Replication of their DNA genomes is a central step in the reproduction of many viruses. Procedures to find replication origins, which are initiation sites of the DNA replication process, are therefore of great importance for controlling the growth and spread of such viruses. Existing computational methods for viral replication origin prediction have mostly been tested within the family of herpesviruses. This paper proposes a new approach by least-squares support vector machines (LS-SVMs) and tests its performance not only on the herpes family but also on a collection of caudoviruses coming from three viral families under the order of caudovirales. The LS-SVM approach provides sensitivities and positive predictive values superior or comparable to those given by the previous methods. When suitably combined with previous methods, the LS-SVM approach further improves the prediction accuracy for the herpesvirus replication origins. Furthermore, by recursive feature elimination, the LS-SVM has also helped find the most significant features of the data sets. The results suggest that the LS-SVMs will be a highly useful addition to the set of computational tools for viral replication origin prediction and illustrate the value of optimization-based computing techniques in biomedical applications. PMID:20729987

Least-Squares Support Vector Machine Approach to Viral Replication Origin Prediction.

PubMed

Cruz-Cano, Raul; Chew, David S H; Kwok-Pui, Choi; Ming-Ying, Leung

2010-06-01

Replication of their DNA genomes is a central step in the reproduction of many viruses. Procedures to find replication origins, which are initiation sites of the DNA replication process, are therefore of great importance for controlling the growth and spread of such viruses. Existing computational methods for viral replication origin prediction have mostly been tested within the family of herpesviruses. This paper proposes a new approach by least-squares support vector machines (LS-SVMs) and tests its performance not only on the herpes family but also on a collection of caudoviruses coming from three viral families under the order of caudovirales. The LS-SVM approach provides sensitivities and positive predictive values superior or comparable to those given by the previous methods. When suitably combined with previous methods, the LS-SVM approach further improves the prediction accuracy for the herpesvirus replication origins. Furthermore, by recursive feature elimination, the LS-SVM has also helped find the most significant features of the data sets. The results suggest that the LS-SVMs will be a highly useful addition to the set of computational tools for viral replication origin prediction and illustrate the value of optimization-based computing techniques in biomedical applications.

Exploring depressive personality traits in youth: origins, correlates, and developmental consequences.

PubMed

Rudolph, Karen D; Klein, Daniel N

2009-01-01

Research suggests that depressive personality (DP) disorder may represent a persistent, trait-based form of depression that lies along an affective spectrum ranging from personality traits to diagnosable clinical disorders. A significant gap in this area of research concerns the development of DP and its applicability to youth. The present research explored the construct of DP traits in youth. Specifically, this study examined the reliability, stability, and validity of the construct, potential origins of DP traits, and the developmental consequences of DP traits. A sample of 143 youth (mean age = 12.37 years, SD = 1.26) and their caregivers completed semistructured interviews and questionnaires on two occasions, separated by a 12-month interval. The measure of DP traits was reliable and moderately stable over time. Providing evidence of construct validity, DP traits were associated with a network of constructs, including a negative self-focus, high-negative and low-positive emotionality, and heightened stress reactivity. Moreover, several potential origins of DP traits were identified, including a history of family adversity, maternal DP traits, and maternal depression. Consistent with hypotheses regarding their developmental significance, DP traits predicted the generation of stress and the emergence of depression (but not nondepressive psychopathology) during the pubertal transition. Finally, depression predicted subsequent DP traits, suggesting a reciprocal process whereby DP traits heighten risk for depression, which then exacerbates these traits. These findings support the construct of DP traits in youth, and suggest that these traits may be a useful addition to developmental models of risk for youth depression.

Developing hybrid approaches to predict pKa values of ionizable groups

PubMed Central

Witham, Shawn; Talley, Kemper; Wang, Lin; Zhang, Zhe; Sarkar, Subhra; Gao, Daquan; Yang, Wei

2011-01-01

Accurate predictions of pKa values of titratable groups require taking into account all relevant processes associated with the ionization/deionization. Frequently, however, the ionization does not involve significant structural changes and the dominating effects are purely electrostatic in origin allowing accurate predictions to be made based on the electrostatic energy difference between ionized and neutral forms alone using a static structure. On another hand, if the change of the charge state is accompanied by a structural reorganization of the target protein, then the relevant conformational changes have to be taken into account in the pKa calculations. Here we report a hybrid approach that first predicts the titratable groups, which ionization is expected to cause conformational changes, termed “problematic” residues, then applies a special protocol on them, while the rest of the pKa’s are predicted with rigid backbone approach as implemented in multi-conformation continuum electrostatics (MCCE) method. The backbone representative conformations for “problematic” groups are generated with either molecular dynamics simulations with charged and uncharged amino acid or with ab-initio local segment modeling. The corresponding ensembles are then used to calculate the pKa of the “problematic” residues and then the results are averaged. PMID:21744395

Japanese children's family drawings and their link to attachment.

PubMed

Behrens, Kazuko Y; Kaplan, Nancy

2011-09-01

This study explored the applicability of family drawings as a tool to estimate attachment security in a sample of Japanese six-year-olds (N = 47), applying Kaplan and Main's ( 1986 ) Family Drawing system. Maternal secure/insecure attachment status judged by the Adult Attachment Interview predicted family drawings' secure/insecure distinction produced by Japanese six-year-olds. However, insecure Japanese drawings took forms not seen in the original Berkeley drawings, such as a lineup of faces alone. Further examination of the Japanese children's drawings using global rating scales (Fury, Carlson, & Sroufe, 1997 ) yielded significant gender differences, rarely reported in the attachment literature, with girls scoring higher in scales that predict attachment security and boys scoring higher in scales that predict attachment insecurity. However, attachment security, as captured in the drawings, was not related to attachment security, observed behaviorally using Main and Cassidy's ( 1988 ) sixth-year reunion system. Implications of the findings are discussed in light of measurements, gender, and culture.

Comparison of Flux-Surface Aligned Curvilinear Coordinate Systems and Neoclassical Magnetic Field Predictions

NASA Astrophysics Data System (ADS)

Collart, T. G.; Stacey, W. M.

2015-11-01

Several methods are presented for extending the traditional analytic ``circular'' representation of flux-surface aligned curvilinear coordinate systems to more accurately describe equilibrium plasma geometry and magnetic fields in DIII-D. The formalism originally presented by Miller is extended to include different poloidal variations in the upper and lower hemispheres. A coordinate system based on separate Fourier expansions of major radius and vertical position greatly improves accuracy in edge plasma structure representation. Scale factors and basis vectors for a system formed by expanding the circular model minor radius can be represented using linear combinations of Fourier basis functions. A general method for coordinate system orthogonalization is presented and applied to all curvilinear models. A formalism for the magnetic field structure in these curvilinear models is presented, and the resulting magnetic field predictions are compared against calculations performed in a Cartesian system using an experimentally based EFIT prediction for the Grad-Shafranov equilibrium. Supported by: US DOE under DE-FG02-00ER54538.

Detection of OD towards the low-mass protostar IRAS 16293-2422

NASA Astrophysics Data System (ADS)

Parise, B.; Du, F.; Liu, F.-C.; Belloche, A.; Wiesemeyer, H.; Güsten, R.; Menten, K. M.; Hübers, H.-W.; Klein, B.

2012-06-01

Context. Although water is an essential and widespread molecule in star-forming regions, its chemical formation pathways are still not very well constrained. Observing the level of deuterium fractionation of OH, a radical involved in the water chemical network, is a promising way to infer its chemical origin. Aims: We aim at understanding the formation mechanisms of water by investigating the origin of its deuterium fractionation. This can be achieved by observing the abundance of OD towards the low-mass protostar IRAS 16293-2422, where the HDO distribution is already known. Methods: Using the GREAT receiver on board SOFIA, we observed the ground-state OD transition at 1391.5 GHz towards the low-mass protostar IRAS 16293-2422. We also present the detection of the HDO 111-000 line using the APEX telescope. We compare the OD/HDO abundance ratio inferred from these observations with the predictions of chemical models. Results: The OD line is detected in absorption towards the source continuum. This is the first detection of OD outside the solar system. The SOFIA observation, coupled to the observation of the HDO 111-000 line, provides an estimate of the abundance ratio OD/HDO ~ 17-90 in the gas where the absorption takes place. This value is fairly high compared with model predictions. This may be reconciled if reprocessing in the gas by means of the dissociative recombination of H2DO+ further fractionates OH with respect to water. Conclusions: The present observation demonstrates the capability of the SOFIA/GREAT instrument to detect the ground transition of OD towards star-forming regions in a frequency range that was not accessible before. Dissociative recombination of H2DO+ may play an important role in setting a high OD abundance. Measuring the branching ratios of this reaction in the laboratory will be of great value for chemical models. Figure 5 is available in electronic form at http://www.aanda.org

The Origin of Dwarf Ellipticals in the Virgo Cluster

NASA Astrophysics Data System (ADS)

Boselli, A.; Boissier, S.; Cortese, L.; Gavazzi, G.

2008-02-01

We study the evolution of dwarf (LH < 109.6 LH⊙) star-forming and quiescent galaxies in the Virgo Cluster by comparing their UV to radio centimetric properties to the predictions of multizone chemospectrophotometric models of galaxy evolution especially tuned to take into account the perturbations induced by the interaction with the cluster intergalactic medium. Our models simulate one or multiple ram pressure stripping events and galaxy starvation. Models predict that all star-forming dwarf galaxies entering the cluster for the first time loose most, if not all, of their atomic gas content, quenching on short timescales (<=150 Myr) their activity of star formation. These dwarf galaxies soon become red and quiescent, gas metal-rich objects with spectrophotometric and structural properties similar to those of dwarf ellipticals. Young, low-luminosity, high surface brightness star-forming galaxies such as late-type spirals and BCDs are probably the progenitors of relatively massive dwarf ellipticals, while it is likely that low surface brightness Magellanic irregulars evolve into very low surface brightness quiescent objects hardly detectable in ground-based imaging surveys. The small number of dwarf galaxies with physical properties intermediate between those of star-forming and quiescent systems is consistent with a rapid (<1 Gyr) transitional phase between the two dwarf galaxy populations. These results, combined with statistical considerations, are consistent with the idea that most of the dwarf ellipticals dominating the faint end of the Virgo luminosity function were initially star-forming systems, accreted by the cluster and stripped of their gas by one or subsequent ram pressure stripping events.

BIonic system: Extraction of Lovelock gravity from a Born-Infeld-type theory

NASA Astrophysics Data System (ADS)

Naimi, Yaghoob; Sepehri, Alireza; Ghaffary, Tooraj; Ghaforyan, Hossein; Ebrahimzadeh, Majid

It was shown that both Lovelock gravity and Born-Infeld (BI) electrodynamics can be obtained from low effective limit of string theory. Motivated by the mentioned unique origin of the gauge-gravity theories, we are going to find a close relation between them. In this research, we start from the Lagrangian of a BI-type nonlinear electrodynamics with an exponential form to extract the action of Lovelock gravity. We investigate the origin of Lovelock gravity in a system of branes which are connected with each other by different wormholes through a BIonic system. These wormholes are produced as due to the nonlinear electrodynamics which are emerged on the interacting branes. By approaching branes, wormholes dissolve into branes and Lovelock gravity is generated. Also, throats of some wormholes become smaller than their horizons and they transit to black holes. Generalizing calculations to M-theory, it is found that by compacting Mp-branes, Lovelock gravity changes to nonlinear electrodynamics and thus both of them have the same origin. This result is consistent with the prediction of BIonic model in string theory.

Origin of Stability in Particle Sedimentation

NASA Technical Reports Server (NTRS)

Segre, Philip N.

2003-01-01

Particle Image Velocimetry (PIV) is used to study the slow settling motions of spheres in suspensions ranging from dilute to highly concentrated, 0.0001 less than phi less than 0.50. During sedimentation, particle velocity fluctuations are found to be organized into regions of characteristic size xi approximately 11 a phi (exp -1/3). A simple model, based upon buoyant mass fluctuations DELTAm given by random density fluctuations in a region of size xi, accurately predicts the magnitudes of the velocity fluctuations DELTAV. We also find a new universal relation for particle diffusion during sedimentation. It can be written in a Stokes-Einstein form as Dapproximately(DELTAmxi)/(6pietaxi), where the effective temperature DELTAmgxi is the gravitational potential energy of density fluctuations. In addition related experiments examining inertial effects and transient states, that are aimed at uncovering the origin of the new lengthscale xi, will also be given.

Observation of the Topological Change Associated with the Dynamical Monodromy

NASA Astrophysics Data System (ADS)

Salmon, Daniel; Nerem, Matthew; Aubin, Seth; Delos, John

2017-04-01

Classical mechanics is an old theory and new phenomena do not often appear. A recently predicted phenomenon is called ``Dynamical Monodromy.'' Monodromy is the study of the behavior of a system as it evolves ``once around a closed circuit''. Systems that do not return to their original state after forming a closed circuit in some space are said to exhibit ``nontrivial monodromy.'' One such system is a collection of non-interacting particles moving in a ``champagne bottle'' potential. A loop of trajectories of this system exhibits a topological change when each of the particles traverse a monodromy circuit in Energy-Angular Momentum space (any closed path that encloses the singular point at the origin). This system has been realized using a rigid spherical pendulum, with a permanent magnet at its end. Magnetic fields generated by coils are used to create the champagne-bottle potential, as well as drive the pendulum through the monodromy circuit.

The statistical geometry of transcriptome divergence in cell-type evolution and cancer.

PubMed

Liang, Cong; Forrest, Alistair R R; Wagner, Günter P

2015-01-14

In evolution, body plan complexity increases due to an increase in the number of individualized cell types. Yet, there is very little understanding of the mechanisms that produce this form of organismal complexity. One model for the origin of novel cell types is the sister cell-type model. According to this model, each cell type arises together with a sister cell type through specialization from an ancestral cell type. A key prediction of the sister cell-type model is that gene expression profiles of cell types exhibit tree structure. Here we present a statistical model for detecting tree structure in transcriptomic data and apply it to transcriptomes from ENCODE and FANTOM5. We show that transcriptomes of normal cells harbour substantial amounts of hierarchical structure. In contrast, cancer cell lines have less tree structure, suggesting that the emergence of cancer cells follows different principles from that of evolutionary cell-type origination.

Metastable Eutectic Equilibrium in Natural Environments: Recent Developments and Research Opportunities

NASA Technical Reports Server (NTRS)

Rietmeijer, Fans J. M.; Nuth, Joseph A., II; Jablonska, Mariola; Karner, James M.

2000-01-01

Chemical ordering at metastable eutectics was recognized in non-equilibrium gas-to- solid condensation experiments to constrain 'silicate' dust formation in O-rich circumstellar environments. The predictable metastable eutectic behavior successfully predicted the observed ferromagnesiosilica, compositions of circumstellar dust, presolar and solar nebula grains in the matrix of the collected aggregate IDPs. Many of the experimentally determined metastable eutectic solids match the fundamental building blocks of common rock-forming layer silicates: this could have implications for the origin of Life. The physical conditions conducive to metastable eutectic behavior, i.e. high temperature and (ultra)fast quenching, lead to unique amorphous, typically nano- to micrometer-sized, materials. The new paradigm of metastable eutectic behavior opens the door to new and exciting research opportunities in uncovering the many implications of these unique amorphous and typically nano- to micrometer-sized, metastable eutectic materials.

Process-morphology scaling relations quantify self-organization in capillary densified nanofiber arrays.

PubMed

Kaiser, Ashley L; Stein, Itai Y; Cui, Kehang; Wardle, Brian L

2018-02-07

Capillary-mediated densification is an inexpensive and versatile approach to tune the application-specific properties and packing morphology of bulk nanofiber (NF) arrays, such as aligned carbon nanotubes. While NF length governs elasto-capillary self-assembly, the geometry of cellular patterns formed by capillary densified NFs cannot be precisely predicted by existing theories. This originates from the recently quantified orders of magnitude lower than expected NF array effective axial elastic modulus (E), and here we show via parametric experimentation and modeling that E determines the width, area, and wall thickness of the resulting cellular pattern. Both experiments and models show that further tuning of the cellular pattern is possible by altering the NF-substrate adhesion strength, which could enable the broad use of this facile approach to predictably pattern NF arrays for high value applications.

Experiences from the testing of a theory for modelling groundwater flow in heterogeneous media

USGS Publications Warehouse

Christensen, S.; Cooley, R.L.

2002-01-01

Usually, small-scale model error is present in groundwater modelling because the model only represents average system characteristics having the same form as the drift and small-scale variability is neglected. These errors cause the true errors of a regression model to be correlated. Theory and an example show that the errors also contribute to bias in the estimates of model parameters. This bias originates from model nonlinearity. In spite of this bias, predictions of hydraulic head are nearly unbiased if the model intrinsic nonlinearity is small. Individual confidence and prediction intervals are accurate if the t-statistic is multiplied by a correction factor. The correction factor can be computed from the true error second moment matrix, which can be determined when the stochastic properties of the system characteristics are known.

Experience gained in testing a theory for modelling groundwater flow in heterogeneous media

USGS Publications Warehouse

Christensen, S.; Cooley, R.L.

2002-01-01

Usually, small-scale model error is present in groundwater modelling because the model only represents average system characteristics having the same form as the drift, and small-scale variability is neglected. These errors cause the true errors of a regression model to be correlated. Theory and an example show that the errors also contribute to bias in the estimates of model parameters. This bias originates from model nonlinearity. In spite of this bias, predictions of hydraulic head are nearly unbiased if the model intrinsic nonlinearity is small. Individual confidence and prediction intervals are accurate if the t-statistic is multiplied by a correction factor. The correction factor can be computed from the true error second moment matrix, which can be determined when the stochastic properties of the system characteristics are known.

Hydrogen bond breaking dynamics in the water pentamer: Terahertz VRT spectroscopy of a 20 μm libration

NASA Astrophysics Data System (ADS)

Cole, William T. S.; Fellers, Raymond S.; Viant, Mark R.; Saykally, Richard J.

2017-01-01

Hydrogen bonds in solid and liquid water are formed and broken via librational vibrations, hence characterizing the details of these motions is vital to understanding these important dynamics. Here we report the measurement and assignment of 875 transitions comprising 6 subbands originating from out-of-plane librational transitions of the water pentamer-d10 near 512 cm-1. The precisely measured (ca. 1 ppm) transitions reveal bifurcation splittings of ˜1884 MHz, a ˜4000× enhancement over ground state splittings and 100× greater than predicted by theory. The pentamer is thus the third water cluster to display greatly enhanced bifurcation tunneling upon single quantum excitation of librational vibrations. From the intensity pattern of the observed transitions, the mechanism of bifurcation is established by comparison with theoretical predictions.

Hydrogen bond breaking dynamics in the water pentamer: Terahertz VRT spectroscopy of a 20 μm libration.

PubMed

Cole, William T S; Fellers, Raymond S; Viant, Mark R; Saykally, Richard J

2017-01-07

Hydrogen bonds in solid and liquid water are formed and broken via librational vibrations, hence characterizing the details of these motions is vital to understanding these important dynamics. Here we report the measurement and assignment of 875 transitions comprising 6 subbands originating from out-of-plane librational transitions of the water pentamer-d 10 near 512 cm -1 . The precisely measured (ca. 1 ppm) transitions reveal bifurcation splittings of ∼1884 MHz, a ∼4000× enhancement over ground state splittings and 100× greater than predicted by theory. The pentamer is thus the third water cluster to display greatly enhanced bifurcation tunneling upon single quantum excitation of librational vibrations. From the intensity pattern of the observed transitions, the mechanism of bifurcation is established by comparison with theoretical predictions.

Nature of native defects in ZnO.

PubMed

Selim, F A; Weber, M H; Solodovnikov, D; Lynn, K G

2007-08-24

This study revealed the nature of native defects and their roles in ZnO through positron annihilation and optical transmission measurements. It showed oxygen vacancies are the origin for the shift in the optical absorption band that causes the red or orange coloration. It also revealed experimental evidence that the donor nature of oxygen vacancy is approximately 0.7 eV. In addition, this work showed the Zn interstitial was not the donor in the as-grown ZnO and supported recent calculations that predicted hydrogen in an oxygen vacancy forms multicenter bonds and acts as a shallow donor.

The linguistics of schizophrenia: thought disturbance as language pathology across positive symptoms.

PubMed

Hinzen, Wolfram; Rosselló, Joana

2015-01-01

We hypothesize that linguistic (dis-)organization in the schizophrenic brain plays a more central role in the pathogenesis of this disease than commonly supposed. Against the standard view, that schizophrenia is a disturbance of thought or selfhood, we argue that the origins of the relevant forms of thought and selfhood at least partially depend on language. The view that they do not is premised by a theoretical conception of language that we here identify as 'Cartesian' and contrast with a recent 'un-Cartesian' model. This linguistic model empirically argues for both (i) a one-to-one correlation between human-specific thought or meaning and forms of grammatical organization, and (ii) an integrative and co-dependent view of linguistic cognition and its sensory-motor dimensions. Core dimensions of meaning mediated by grammar on this model specifically concern forms of referential and propositional meaning. A breakdown of these is virtually definitional of core symptoms. Within this model the three main positive symptoms of schizophrenia fall into place as failures in language-mediated forms of meaning, manifest either as a disorder of speech perception (Auditory Verbal Hallucinations), abnormal speech production running without feedback control (Formal Thought Disorder), or production of abnormal linguistic content (Delusions). Our hypothesis makes testable predictions for the language profile of schizophrenia across symptoms; it simplifies the cognitive neuropsychology of schizophrenia while not being inconsistent with a pattern of neurocognitive deficits and their correlations with symptoms; and it predicts persistent findings on disturbances of language-related circuitry in the schizophrenic brain.

Accuracy of Short Forms of the Dutch Wechsler Preschool and Primary Scale of Intelligence: Third Edition.

PubMed

Hurks, Petra; Hendriksen, Jos; Dek, Joelle; Kooij, Andress

2016-04-01

This article investigated the accuracy of six short forms of the Dutch Wechsler Preschool and Primary Scale of Intelligence-Third edition (WPPSI-III-NL) in estimating intelligent quotient (IQ) scores in healthy children aged 4 to 7 years (N = 1,037). Overall, accuracy for each short form was studied, comparing IQ equivalences based on the short forms with the original WPPSI-III-NL Full Scale IQ (FSIQ) scores. Next, our sample was divided into three groups: children performing below average, average, or above average, based on the WPPSI-III-NL FSIQ estimates of the original long form, to study the accuracy of WPPSI-III-NL short forms at the tails of the FSIQ distribution. While studying the entire sample, all IQ estimates of the WPPSI-III-NL short forms correlated highly with the FSIQ estimates of the original long form (all rs ≥ .83). Correlations decreased significantly while studying only the tails of the IQ distribution (rs varied between .55 and .83). Furthermore, IQ estimates of the short forms deviated significantly from the FSIQ score of the original long form, when the IQ estimates were based on short forms containing only two subtests. In contrast, unlike the short forms that contained two to four subtests, the Wechsler Abbreviated Scale of Intelligence short form (containing the subtests Vocabulary, Similarities, Block Design, and Matrix Reasoning) and the General Ability Index short form (containing the subtests Vocabulary, Similarities, Comprehension, Block Design, Matrix Reasoning, and Picture Concepts) produced less variations when compared with the original FSIQ score. © The Author(s) 2015.

Origins and evolution of viruses of eukaryotes: The ultimate modularity

PubMed Central

Koonin, Eugene V.; Dolja, Valerian V.; Krupovic, Mart

2018-01-01

Viruses and other selfish genetic elements are dominant entities in the biosphere, with respect to both physical abundance and genetic diversity. Various selfish elements parasitize on all cellular life forms. The relative abundances of different classes of viruses are dramatically different between prokaryotes and eukaryotes. In prokaryotes, the great majority of viruses possess double-stranded (ds) DNA genomes, with a substantial minority of single-stranded (ss) DNA viruses and only limited presence of RNA viruses. In contrast, in eukaryotes, RNA viruses account for the majority of the virome diversity although ssDNA and dsDNA viruses are common as well. Phylogenomic analysis yields tangible clues for the origins of major classes of eukaryotic viruses and in particular their likely roots in prokaryotes. Specifically, the ancestral genome of positive-strand RNA viruses of eukaryotes might have been assembled de novo from genes derived from prokaryotic retroelements and bacteria although a primordial origin of this class of viruses cannot be ruled out. Different groups of double-stranded RNA viruses derive either from dsRNA bacteriophages or from positive-strand RNA viruses. The eukaryotic ssDNA viruses apparently evolved via a fusion of genes from prokaryotic rolling circle-replicating plasmids and positive-strand RNA viruses. Different families of eukaryotic dsDNA viruses appear to have originated from specific groups of bacteriophages on at least two independent occasions. Polintons, the largest known eukaryotic transposons, predicted to also form virus particles, most likely, were the evolutionary intermediates between bacterial tectiviruses and several groups of eukaryotic dsDNA viruses including the proposed order “Megavirales” that unites diverse families of large and giant viruses. Strikingly, evolution of all classes of eukaryotic viruses appears to have involved fusion between structural and replicative gene modules derived from different sources along with additional acquisitions of diverse genes. PMID:25771806

77 FR 59456 - Proposed Collection; Comment Request for Form 8281

Federal Register 2010, 2011, 2012, 2013, 2014

2012-09-27

... 8281, Information Return for Publicity Offered Original Issue Discount Instructions. DATES: Written... Offered Original Issue Discount Instruments. OMB Number: 1545-0887. Form Number: 8281. Abstract: Internal... publicity offered debt instruments having original issue discount. Regulations section 1.1275- 3 prescribes...

On the Evolution of the Mammalian Brain.

PubMed

Torday, John S; Miller, William B

2016-01-01

Hobson and Friston have hypothesized that the brain must actively dissipate heat in order to process information (Hobson et al., 2014). This physiologic trait is functionally homologous with the first instantation of life formed by lipids suspended in water forming micelles- allowing the reduction in entropy (heat dissipation). This circumvents the Second Law of Thermodynamics permitting the transfer of information between living entities, enabling them to perpetually glean information from the environment, that is felt by many to correspond to evolution per se. The next evolutionary milestone was the advent of cholesterol, embedded in the cell membranes of primordial eukaryotes, facilitating metabolism, oxygenation and locomotion, the triadic basis for vertebrate evolution. Lipids were key to homeostatic regulation of calcium, forming calcium channels. Cell membrane cholesterol also fostered metazoan evolution by forming lipid rafts for receptor-mediated cell-cell signaling, the origin of the endocrine system. The eukaryotic cell membrane exapted to all complex physiologic traits, including the lung and brain, which are molecularly homologous through the function of neuregulin, mediating both lung development and myelinization of neurons. That cooption later exapted as endothermy during the water-land transition (Torday, 2015a), perhaps being the functional homolog for brain heat dissipation and conscious/mindful information processing. The skin and brain similarly share molecular homologies through the "skin-brain" hypothesis, giving insight to the cellular-molecular "arc" of consciousness from its unicellular origins to integrated physiology. This perspective on the evolution of the central nervous system clarifies self-organization, reconciling thermodynamic and informational definitions of the underlying biophysical mechanisms, thereby elucidating relations between the predictive capabilities of the brain and self-organizational processes.

The Formation and Physical Origin of Highly Ionized Cooling Gas

NASA Astrophysics Data System (ADS)

Bordoloi, Rongmon; Wagner, Alexander Y.; Heckman, Timothy M.; Norman, Colin A.

2017-10-01

We present a simple model that explains the origin of warm, diffuse gas seen primarily as highly ionized absorption-line systems in the spectra of background sources. We predict the observed column densities of several highly ionized transitions such as O VI, O vii, Ne viii, N v, and Mg x, and we present a unified comparison of the model predictions with absorption lines seen in the Milky Way disk, Milky Way halo, starburst galaxies, the circumgalactic medium, and the intergalactic medium at low and high redshifts. We show that diffuse gas seen in such diverse environments can be simultaneously explained by a simple model of radiatively cooling gas. We show that most such absorption-line systems are consistent with being collisionally ionized, and we estimate the maximum-likelihood temperature of the gas in each observation. This model satisfactorily explains why O VI is regularly observed around star-forming low-z L* galaxies, and why N v is rarely seen around the same galaxies. We further present some consequences of this model in quantifying the dynamics of the cooling gas around galaxies and predict the shock velocities associated with such flows. A unique strength of this model is that while it has only one free (but physically well-constrained) parameter, it nevertheless successfully reproduces the available data on O VI absorbers in the interstellar, circumgalactic, intragroup, and intergalactic media, as well as the available data on other absorption lines from highly ionized species.

The Formation and Physical Origin of Highly Ionized Cooling Gas

DOE Office of Scientific and Technical Information (OSTI.GOV)

Bordoloi, Rongmon; Wagner, Alexander Y.; Heckman, Timothy M.

We present a simple model that explains the origin of warm, diffuse gas seen primarily as highly ionized absorption-line systems in the spectra of background sources. We predict the observed column densities of several highly ionized transitions such as O vi, O vii, Ne viii, N v, and Mg x, and we present a unified comparison of the model predictions with absorption lines seen in the Milky Way disk, Milky Way halo, starburst galaxies, the circumgalactic medium, and the intergalactic medium at low and high redshifts. We show that diffuse gas seen in such diverse environments can be simultaneously explainedmore » by a simple model of radiatively cooling gas. We show that most such absorption-line systems are consistent with being collisionally ionized, and we estimate the maximum-likelihood temperature of the gas in each observation. This model satisfactorily explains why O vi is regularly observed around star-forming low- z L* galaxies, and why N v is rarely seen around the same galaxies. We further present some consequences of this model in quantifying the dynamics of the cooling gas around galaxies and predict the shock velocities associated with such flows. A unique strength of this model is that while it has only one free (but physically well-constrained) parameter, it nevertheless successfully reproduces the available data on O vi absorbers in the interstellar, circumgalactic, intragroup, and intergalactic media, as well as the available data on other absorption lines from highly ionized species.« less

Individual differences in learning predict the return of fear.

PubMed

Gershman, Samuel J; Hartley, Catherine A

2015-09-01

Using a laboratory analogue of learned fear (Pavlovian fear conditioning), we show that there is substantial heterogeneity across individuals in spontaneous recovery of fear following extinction training. We propose that this heterogeneity might stem from qualitative individual differences in the nature of extinction learning. Whereas some individuals tend to form a new memory during extinction, leaving their fear memory intact, others update the original threat association with new safety information, effectively unlearning the fear memory. We formalize this account in a computational model of fear learning and show that individuals who, according to the model, are more likely to form new extinction memories tend to show greater spontaneous recovery compared to individuals who appear to only update a single memory. This qualitative variation in fear and extinction learning may have important implications for understanding vulnerability and resilience to fear-related psychiatric disorders.

Multistream hydrodynamic modeling of interhemispheric plasma flow

NASA Technical Reports Server (NTRS)

Rasmussen, C. E.; Schunk, R. W.

1988-01-01

Interhemispheric plasma flow was simulated using one-stream and two-stream hydrodymic models in order to test the suggestion of Banks et al. (1971) and others that the collision of high-speed flows originating from the conjugate hemispheres will cause the formation of a pair of shocks. The single-fluid hydrodynamic equations were modified to include multiple ion streams, allowing for the possibility of counterstreaming flow. It was found that a counterstreaming of ion streams from conjugate hemispheres does occur during the early stages of the refilling of plamaspheric flux tubes, and that a pair of reverse shocks does form. These shocks form away from the equator, and their subsequent motion creates conditions similar to those predicted by the single-stream hydrodynamic models. The findings support the conclusion of earlier studies that the refilling of the plasmasphere occurs from the equatorial region downward.

The Minnesota Multiphasic Personality Inventory-2-Restructured Form (MMPI-2-RF): incremental validity in predicting early postoperative outcomes in spine surgery candidates.

PubMed

Marek, Ryan J; Block, Andrew R; Ben-Porath, Yossef S

2015-03-01

A substantial proportion of individuals who undergo surgical procedures to relieve spine pain continue to report significant pain and dysfunction after recovery. Psychopathology and patient expectations have been linked to poor results, leading to an increasing reliance on presurgical psychological screening (PPS) as part of the surgical diagnostic process. The original Minnesota Multiphasic Personality Inventory (MMPI; Hathaway & McKinley, 1943) and the MMPI-2 (Butcher, Graham, Ben-Porath, Tellegen, & Dahlstrom, 2001) were among the measures most commonly used in PPS evaluations and research. This study focuses on the newest version of the test, the MMPI-2-Restructured Form (MMPI-2-RF; Ben-Porath & Tellegen, 2008/2011; Tellegen & Ben-Porath, 2008/2011) as a predictor of outcomes for spine surgery candidates. Using a sample of 172 men and 210 women who underwent a PPS, we examined the ability of MMPI-2-RF scale scores to predict early surgical outcomes independent of other presurgical risk factors identified by other means, as well as patients' presurgical expectations. MMPI-2-RF results accounted for up to 11% of additional variance in measures of early postoperative functioning. MMPI-2-RF scales that assess for emotional/internalizing problems, specifically Demoralization, measures of somatoform dysfunction, and interpersonal problems contributed most to the prediction of diminished outcome. 2015 APA, all rights reserved

Migration-driven diversity of super-Earth compositions

NASA Astrophysics Data System (ADS)

Raymond, Sean N.; Boulet, Thibault; Izidoro, Andre; Esteves, Leandro; Bitsch, Bertram

2018-06-01

A leading model for the origin of super-Earths proposes that planetary embryos migrate inward and pile up on close-in orbits. As large embryos are thought to preferentially form beyond the snow line, this naively predicts that most super-Earths should be very water-rich. Here we show that the shortest-period planets formed in the migration model are often purely rocky. The inward migration of icy embryos through the terrestrial zone accelerates the growth of rocky planets via resonant shepherding. We illustrate this process with a simulation that provided a match to the Kepler-36 system of two planets on close orbits with very different densities. In the simulation, two super-Earths formed in a Kepler-36-like configuration; the inner planet was pure rock while the outer one was ice-rich. We conclude from a suite of simulations that the feeding zones of close-in super-Earths are likely to be broad and disconnected from their final orbital radii.

32 CFR 635.13 - Amendment of records.

Code of Federal Regulations, 2010 CFR

2010-07-01

... delegable. If the decision is made to amend an MPR, a supplemental DA Form 3975 will be prepared. The supplemental DA Form 3975 will change information on the original DA Form 3975 and will be mailed to the... file the supplemental DA Form 3975 with the original MPR and notify the requestor of the amendment of...

Unchained Melody: Revisiting the Estimation of SF-6D Values

PubMed Central

Craig, Benjamin M.

2015-01-01

Purpose In the original SF-6D valuation study, the analytical design inherited conventions that detrimentally affected its ability to predict values on a quality-adjusted life year (QALY) scale. Our objective is to estimate UK values for SF-6D states using the original data and multi-attribute utility (MAU) regression after addressing its limitations and to compare the revised SF-6D and EQ-5D value predictions. Methods Using the unaltered data (611 respondents, 3503 SG responses), the parameters of the original MAU model were re-estimated under 3 alternative error specifications, known as the instant, episodic, and angular random utility models. Value predictions on a QALY scale were compared to EQ-5D3L predictions using the 1996 Health Survey for England. Results Contrary to the original results, the revised SF-6D value predictions range below 0 QALYs (i.e., worse than death) and agree largely with EQ-5D predictions after adjusting for scale. Although a QALY is defined as a year in optimal health, the SF-6D sets a higher standard for optimal health than the EQ-5D-3L; therefore, it has larger units on a QALY scale by construction (20.9% more). Conclusions Much of the debate in health valuation has focused on differences between preference elicitation tasks, sampling, and instruments. After correcting errant econometric practices and adjusting for differences in QALY scale between the EQ-5D and SF-6D values, the revised predictions demonstrate convergent validity, making them more suitable for UK economic evaluations compared to original estimates. PMID:26359242

Novel C8orf37 mutations cause retinitis pigmentosa in consanguineous families of Pakistani origin

PubMed Central

Ravesh, Zeinab; El Asrag, Mohammed E.; Weisschuh, Nicole; McKibbin, Martin; Reuter, Peggy; Watson, Christopher M.; Baumann, Britta; Poulter, James A.; Sajid, Sundus; Panagiotou, Evangelia S.; O’Sullivan, James; Abdelhamed, Zakia; Bonin, Michael; Soltanifar, Mehdi; Black, Graeme C.M.; Din, Muhammad Amin-ud; Toomes, Carmel; Ansar, Muhammad; Inglehearn, Chris F.; Wissinger, Bernd

2015-01-01

Purpose To investigate the molecular basis of retinitis pigmentosa in two consanguineous families of Pakistani origin with multiple affected members. Methods Homozygosity mapping and Sanger sequencing of candidate genes were performed in one family while the other was analyzed with whole exome next-generation sequencing. A minigene splicing assay was used to confirm the splicing defects. Results In family MA48, a novel homozygous nucleotide substitution in C8orf37, c.244–2A>C, that disrupted the consensus splice acceptor site of exon 3 was found. The minigene splicing assay revealed that this mutation activated a cryptic splice site within exon 3, causing a 22 bp deletion in the transcript that is predicted to lead to a frameshift followed by premature protein truncation. In family MA13, a novel homozygous null mutation in C8orf37, c.555G>A, p.W185*, was identified. Both mutations segregated with the disease phenotype as expected in a recessive manner and were absent in 8,244 unrelated individuals of South Asian origin. Conclusions In this report, we describe C8orf37 mutations that cause retinal dystrophy in two families of Pakistani origin, contributing further data on the phenotype and the spectrum of mutations in this form of retinitis pigmentosa. PMID:25802487

Estimation and prediction of origin-destination matrices for I-66.

DOT National Transportation Integrated Search

2011-09-01

This project uses the Box-Jenkins time-series technique to model and forecast the traffic flows and then : uses the flow forecasts to predict the origin-destination matrices. First, a detailed analysis was conducted : to investigate the best data cor...

Characterizing haploinsufficiency of SHELL gene to improve fruit form prediction in introgressive hybrids of oil palm.

PubMed

Teh, Chee-Keng; Muaz, Siti Dalila; Tangaya, Praveena; Fong, Po-Yee; Ong, Ai-Ling; Mayes, Sean; Chew, Fook-Tim; Kulaveerasingam, Harikrishna; Appleton, David

2017-06-08

The fundamental trait in selective breeding of oil palm (Eleais guineensis Jacq.) is the shell thickness surrounding the kernel. The monogenic shell thickness is inversely correlated to mesocarp thickness, where the crude palm oil accumulates. Commercial thin-shelled tenera derived from thick-shelled dura × shell-less pisifera generally contain 30% higher oil per bunch. Two mutations, sh MPOB (M1) and sh AVROS (M2) in the SHELL gene - a type II MADS-box transcription factor mainly present in AVROS and Nigerian origins, were reported to be responsible for different fruit forms. In this study, we have tested 1,339 samples maintained in Sime Darby Plantation using both mutations. Five genotype-phenotype discrepancies and eight controls were then re-tested with all five reported mutations (sh AVROS , sh MPOB , sh MPOB2 , sh MPOB3 and sh MPOB4 ) within the same gene. The integration of genotypic data, pedigree records and shell formation model further explained the haploinsufficiency effect on the SHELL gene with different number of functional copies. Some rare mutations were also identified, suggesting a need to further confirm the existence of cis-compound mutations in the gene. With this, the prediction accuracy of fruit forms can be further improved, especially in introgressive hybrids of oil palm. Understanding causative variant segregation is extremely important, even for monogenic traits such as shell thickness in oil palm.

Kalman Filtered MR Temperature Imaging for Laser Induced Thermal Therapies

PubMed Central

Fuentes, D.; Yung, J.; Hazle, J. D.; Weinberg, J. S.; Stafford, R. J.

2013-01-01

The feasibility of using a stochastic form of Pennes bioheat model within a 3D finite element based Kalman filter (KF) algorithm is critically evaluated for the ability to provide temperature field estimates in the event of magnetic resonance temperature imaging (MRTI) data loss during laser induced thermal therapy (LITT). The ability to recover missing MRTI data was analyzed by systematically removing spatiotemporal information from a clinical MR-guided LITT procedure in human brain and comparing predictions in these regions to the original measurements. Performance was quantitatively evaluated in terms of a dimensionless L2 (RMS) norm of the temperature error weighted by acquisition uncertainty. During periods of no data corruption, observed error histories demonstrate that the Kalman algorithm does not alter the high quality temperature measurement provided by MR thermal imaging. The KF-MRTI implementation considered is seen to predict the bioheat transfer with RMS error < 4 for a short period of time, Δt < 10sec, until the data corruption subsides. In its present form, the KF-MRTI method currently fails to compensate for consecutive for consecutive time periods of data loss Δt > 10sec. PMID:22203706

3D Monte-Carlo study of toroidally discontinuous limiter SOL configurations of Aditya tokamak

NASA Astrophysics Data System (ADS)

Sahoo, Bibhu Prasad; Sharma, Devendra; Jha, Ratneshwar; Feng, Yühe

2017-08-01

The plasma-neutral transport in the scrape-off layer (SOL) region formed by toroidally discontinuous limiters deviates from usual uniform SOL approximations when 3D effects caused by limiter discreteness begin to dominate. In an upgrade version of the Aditya tokamak, originally having a toroidally localized poloidal ring-like limiter, the newer outboard block and inboard belt limiters are expected to have smaller connection lengths and a multiple fold toroidal periodicity. The characteristics of plasma discharges may accordingly vary from the original observations of large diffusivity, and a net improvement and the stability of the discharges are desired. The estimations related to 3D effects in the ring limiter plasma transport are also expected to be modified and are updated by predictive simulations of transport in the new block limiter configuration. A comparison between the ring limiter results and those from new simulations with block limiter SOL shows that for the grids produced using same core plasma equilibrium, the modified SOL plasma flows and flux components have enhanced poloidal periodicity in the block limiter case. These SOL modifications result in a reduced net recycling for the equivalent edge density values. Predictions are also made about the relative level of the diffusive transport and its impact on the factors limiting the operational regime.

A cardiorespiratory classifier of voluntary and involuntary electrodermal activity

PubMed Central

2010-01-01

Background Electrodermal reactions (EDRs) can be attributed to many origins, including spontaneous fluctuations of electrodermal activity (EDA) and stimuli such as deep inspirations, voluntary mental activity and startling events. In fields that use EDA as a measure of psychophysiological state, the fact that EDRs may be elicited from many different stimuli is often ignored. This study attempts to classify observed EDRs as voluntary (i.e., generated from intentional respiratory or mental activity) or involuntary (i.e., generated from startling events or spontaneous electrodermal fluctuations). Methods Eight able-bodied participants were subjected to conditions that would cause a change in EDA: music imagery, startling noises, and deep inspirations. A user-centered cardiorespiratory classifier consisting of 1) an EDR detector, 2) a respiratory filter and 3) a cardiorespiratory filter was developed to automatically detect a participant's EDRs and to classify the origin of their stimulation as voluntary or involuntary. Results Detected EDRs were classified with a positive predictive value of 78%, a negative predictive value of 81% and an overall accuracy of 78%. Without the classifier, EDRs could only be correctly attributed as voluntary or involuntary with an accuracy of 50%. Conclusions The proposed classifier may enable investigators to form more accurate interpretations of electrodermal activity as a measure of an individual's psychophysiological state. PMID:20184746

The subscales and short forms of the dizziness handicap inventory: are they useful for comparison of the patient groups?

PubMed

Ardıç, Fazıl Necdet; Tümkaya, Funda; Akdağ, Beyza; Şenol, Hande

2017-10-01

Dizziness Handicap Inventory (DHI) is one of the most frequently used surveys for vertigo. The aim of the study was re-analyze the consistency of subscales and correlation between original and different short forms. The data of 2111 patients were analyzed. Original three subscales, screening form of DHI and short form of DHI were evaluated. The suitability of the data set for factor analysis and factor structure was analyzed with Kaiser-Meyer-Olkin (KMO) coefficient, Bartlett's Sphericity Test, and Varimax method. Pearson correlation analysis was performed. Factor analysis showed that two factor solutions are more prominent in our data. The factors proposed in different studies are not in harmony with each other. There is high correlation between the original and screening and short forms of DHI. This study indicated that the factor structure of the scale was not consistent. It is not advised to use subscale scores for comparison especially in international level. Therefore, total score should be used rather than the scores of the subscales. Using DHI screening form instead of original 25 questions is more convenient, because it is highly correlated with the original one and has fewer questions. Implications for rehabilitation Factor structure of the DHI is not consistent enough for comparison of the international studies. Total score of DHI is reliable. Using the screening version of DHI is better, because it is highly correlated with the original form and has fewer questions (10 questions).

Metastable Eutectic Equilibrium in Natural Environments: Recent Development and Research Opportunities

NASA Technical Reports Server (NTRS)

Rietmeijer, Frans J. M.; Nuth, Joseph A., III; Jablonska, Mariola; Karner, James M.

2000-01-01

Chemical ordering at metastable eutectics was recognized in non-equilibrium gas-to- solid condensation experiments to constrain 'silicate' dust formation in O-rich circumstellar environments. The predictable metastable eutectic behavior successfully predicted the observed ferromagnesiosilica compositions of circumstellar dust presolar and solar nebula grains in the matrix of the collected aggregate IDPs (Interplanetary Dust Particles). Many of the experimentally determined metastable eutectic solids match the fundamental building blocks of common rock-forming layer silicates: this could have implications for the origin of Life. The physical conditions conducive to metastable eutectic behavior, i.e. high temperature and (ultra) fast quenching, lead to unique amorphous, typically nano- to micrometer-sized, materials. The new paradigm of metastable eutectic behavior opens the door to new and exciting research opportunities in uncovering the many implications of these unique amorphous, and typically nano-to micrometer-sized, metastable eutectic materials.

Structure-topology-property correlations of sodium phosphosilicate glasses.

PubMed

Hermansen, Christian; Guo, Xiaoju; Youngman, Randall E; Mauro, John C; Smedskjaer, Morten M; Yue, Yuanzheng

2015-08-14

In this work, we investigate the correlations among structure, topology, and properties in a series of sodium phosphosilicate glasses with [SiO2]/[SiO2 + P2O5] ranging from 0 to 1. The network structure is characterized by (29)Si and (31)P magic-angle spinning nuclear magnetic resonance and Raman spectroscopy. The results show the formation of six-fold coordinated silicon species in phosphorous-rich glasses. Based on the structural data, we propose a formation mechanism of the six-fold coordinated silicon, which is used to develop a quantitative structural model for predicting the speciation of the network forming units as a function of chemical composition. The structural model is then used to establish a temperature-dependent constraint description of phosphosilicate glass topology that enables prediction of glass transition temperature, liquid fragility, and indentation hardness. The topological constraint model provides insight into structural origin of the mixed network former effect in phosphosilicate glasses.

Origin, antigenicity, and function of a secreted form of ORF2 in hepatitis E virus infection.

PubMed

Yin, Xin; Ying, Dong; Lhomme, Sébastien; Tang, Zimin; Walker, Christopher M; Xia, Ningshao; Zheng, Zizheng; Feng, Zongdi

2018-05-01

The enterically transmitted hepatitis E virus (HEV) adopts a unique strategy to exit cells by cloaking its capsid (encoded by the viral ORF2 gene) and circulating in the blood as "quasi-enveloped" particles. However, recent evidence suggests that the majority of the ORF2 protein present in the patient serum and supernatants of HEV-infected cell culture exists in a free form and is not associated with virus particles. The origin and biological functions of this secreted form of ORF2 (ORF2 S ) are unknown. Here we show that production of ORF2 S results from translation initiated at the previously presumed AUG start codon for the capsid protein, whereas translation of the actual capsid protein (ORF2 C ) is initiated at a previously unrecognized internal AUG codon (15 codons downstream of the first AUG). The addition of 15 amino acids to the N terminus of the capsid protein creates a signal sequence that drives ORF2 S secretion via the secretory pathway. Unlike ORF2 C , ORF2 S is glycosylated and exists as a dimer. Nonetheless, ORF2 S exhibits substantial antigenic overlap with the capsid, but the epitopes predicted to bind the putative cell receptor are lost. Consistent with this, ORF2 S does not block HEV cell entry but inhibits antibody-mediated neutralization. These results reveal a previously unrecognized aspect in HEV biology and shed new light on the immune evasion mechanisms and pathogenesis of this virus.

Exploring Depressive Personality Traits in Youth: Origins, Correlates, and Developmental Consequences

PubMed Central

Rudolph, Karen D.; Klein, Daniel N.

2009-01-01

Research suggests that depressive personality (DP) disorder may represent a persistent, trait-based form of depression that lies along an affective spectrum ranging from personality traits to diagnosable clinical disorders (Klein & Bessaha, 2009). A significant gap in this area of research concerns the development of DP and its applicability to youth. The present research explored the construct of DP traits in youth. Specifically, this study examined the reliability, stability, and validity of the construct, potential origins of DP traits, and the developmental consequences of DP traits. A sample of 143 youth (M age = 12.37 years, SD = 1.26) and their caregivers completed semi-structured interviews and questionnaires on two occasions, separated by a 12 month interval. The measure of DP traits was reliable and moderately stable over time. Providing evidence of construct validity, DP traits were associated with a network of constructs, including a negative self-focus, high negative and low positive emotionality, and heightened stress reactivity. Moreover, several potential origins of DP traits were identified, including a history of family adversity, maternal DP traits, and maternal depression. Consistent with hypotheses regarding their developmental significance, DP traits predicted the generation of stress and the emergence of depression (but not nondepressive psychopathology) during the pubertal transition. Finally, depression predicted subsequent DP traits, suggesting a reciprocal process whereby DP traits heighten risk for depression, which then exacerbates these traits. These findings support the construct of DP traits in youth, and suggest that these traits may be a useful addition to developmental models of risk for youth depression. PMID:19825262

Modular structural elements in the replication origin region of Tetrahymena rDNA.

PubMed Central

Du, C; Sanzgiri, R P; Shaiu, W L; Choi, J K; Hou, Z; Benbow, R M; Dobbs, D L

1995-01-01

Computer analyses of the DNA replication origin region in the amplified rRNA genes of Tetrahymena thermophila identified a potential initiation zone in the 5'NTS [Dobbs, Shaiu and Benbow (1994), Nucleic Acids Res. 22, 2479-2489]. This region consists of a putative DNA unwinding element (DUE) aligned with predicted bent DNA segments, nuclear matrix or scaffold associated region (MAR/SAR) consensus sequences, and other common modular sequence elements previously shown to be clustered in eukaryotic chromosomal origin regions. In this study, two mung bean nuclease-hypersensitive sites in super-coiled plasmid DNA were localized within the major DUE-like element predicted by thermodynamic analyses. Three restriction fragments of the 5'NTS region predicted to contain bent DNA segments exhibited anomalous migration characteristic of bent DNA during electrophoresis on polyacrylamide gels. Restriction fragments containing the 5'NTS region bound Tetrahymena nuclear matrices in an in vitro binding assay, consistent with an association of the replication origin region with the nuclear matrix in vivo. The direct demonstration in a protozoan origin region of elements previously identified in Drosophila, chick and mammalian origin regions suggests that clusters of modular structural elements may be a conserved feature of eukaryotic chromosomal origins of replication. Images PMID:7784181

Prospective Associations From Family-of-Origin Interactions to Adult Marital Interactions and Relationship Adjustment

PubMed Central

Whitton, Sarah W.; Waldinger, Robert J.; Schulz, Marc S.; Allen, Joseph P.; Crowell, Judith A.; Hauser, Stuart T.

2011-01-01

To test the social learning–based hypothesis that marital conflict resolution patterns are learned in the family of origin, longitudinal, observational data were used to assess prospective associations between family conflict interaction patterns during adolescence and offspring’s later marital conflict interaction patterns. At age 14 years, 47 participants completed an observed family conflict resolution task with their parents. In a subsequent assessment 17 years later, the participants completed measures of marital adjustment and an observed marital conflict interaction task with their spouse. As predicted, levels of hostility and positive engagement expressed by parents and adolescents during family interactions were prospectively linked with levels of hostility and positive engagement expressed by offspring and their spouses during marital interactions. Family-of-origin hostility was a particularly robust predictor of marital interaction behaviors; it predicted later marital hostility and negatively predicted positive engagement, controlling for psychopathology and family-of-origin positive engagement. For men, family-of-origin hostility also predicted poorer marital adjustment, an effect that was mediated through hostility in marital interactions. These findings suggest a long-lasting influence of family communication patterns, particularly hostility, on offspring’s intimate communication and relationship functioning. PMID:18410214

The effect of reflector geometry on the acoustic field and bubble dynamics produced by an electrohydraulic shock wave lithotripter.

PubMed

Zhou, Yufeng; Zhong, Pei

2006-06-01

A theoretical model for the propagation of shock wave from an axisymmetric reflector was developed by modifying the initial conditions for the conventional solution of a nonlinear parabolic wave equation (i.e., the Khokhlov-Zabolotskaya-Kuznestsov equation). The ellipsoidal reflector of an HM-3 lithotripter is modeled equivalently as a self-focusing spherically distributed pressure source. The pressure wave form generated by the spark discharge of the HM-3 electrode was measured by a fiber optic probe hydrophone and used as source conditions in the numerical calculation. The simulated pressure wave forms, accounting for the effects of diffraction, nonlinearity, and thermoviscous absorption in wave propagation and focusing, were compared with the measured results and a reasonably good agreement was found. Furthermore, the primary characteristics in the pressure wave forms produced by different reflector geometries, such as that produced by a reflector insert, can also be predicted by this model. It is interesting to note that when the interpulse delay time calculated by linear geometric model is less than about 1.5 micros, two pulses from the reflector insert and the uncovered bottom of the original HM-3 reflector will merge together. Coupling the simulated pressure wave form with the Gilmore model was carried out to evaluate the effect of reflector geometry on resultant bubble dynamics in a lithotripter field. Altogether, the equivalent reflector model was found to provide a useful tool for the prediction of pressure wave form generated in a lithotripter field. This model may be used to guide the design optimization of reflector geometries for improving the performance and safety of clinical lithotripters.

The effect of reflector geometry on the acoustic field and bubble dynamics produced by an electrohydraulic shock wave lithotripter

PubMed Central

Zhou, Yufeng; Zhong, Pei

2007-01-01

A theoretical model for the propagation of shock wave from an axisymmetric reflector was developed by modifying the initial conditions for the conventional solution of a nonlinear parabolic wave equation (i.e., the Khokhlov–Zabolotskaya–Kuznestsov equation). The ellipsoidal reflector of an HM-3 lithotripter is modeled equivalently as a self-focusing spherically distributed pressure source. The pressure wave form generated by the spark discharge of the HM-3 electrode was measured by a fiber optic probe hydrophone and used as source conditions in the numerical calculation. The simulated pressure wave forms, accounting for the effects of diffraction, nonlinearity, and thermoviscous absorption in wave propagation and focusing, were compared with the measured results and a reasonably good agreement was found. Furthermore, the primary characteristics in the pressure wave forms produced by different reflector geometries, such as that produced by a reflector insert, can also be predicted by this model. It is interesting to note that when the interpulse delay time calculated by linear geometric model is less than about 1.5 μs, two pulses from the reflector insert and the uncovered bottom of the original HM-3 reflector will merge together. Coupling the simulated pressure wave form with the Gilmore model was carried out to evaluate the effect of reflector geometry on resultant bubble dynamics in a lithotripter field. Altogether, the equivalent reflector model was found to provide a useful tool for the prediction of pressure wave form generated in a lithotripter field. This model may be used to guide the design optimization of reflector geometries for improving the performance and safety of clinical lithotripters. PMID:16838506

Meta-Analysis of Land Use / Land Cover Change Factors in the Conterminous US and Prediction of Potential Working Timberlands in the US South from FIA Inventory Plots and NLCD Cover Maps

NASA Astrophysics Data System (ADS)

Jeuck, James A.

This dissertation consists of research projects related to forest land use / land cover (LULC): (1) factors predicting LULC change and (2) methodology to predict particular forest use, or "potential working timberland" (PWT), from current forms of land data. The first project resulted in a published paper, a meta-analysis of 64 econometric models from 47 studies predicting forest land use changes. The response variables, representing some form of forest land change, were organized into four groups: forest conversion to agriculture (F2A), forestland to development (F2D), forestland to non-forested (F2NF) and undeveloped (including forestland) to developed (U2D) land. Over 250 independent econometric variables were identified, from 21 F2A models, 21 F2D models, 12 F2NF models, and 10 U2D models. These variables were organized into a hierarchy of 119 independent variable groups, 15 categories, and 4 econometric drivers suitable for conducting simple vote count statistics. Vote counts were summarized at the independent variable group level and formed into ratios estimating the predictive success of each variable group. Two ratio estimates were developed based on (1) proportion of times independent variables successfully achieved statistical significance (p ≤0.10), and (2) proportion of times independent variables successfully met the original researchers'expectations. In F2D models, popular independent variables such as population, income, and urban proximity often achieved statistical significance. In F2A models, popular independent variables such as forest and agricultural rents and costs, governmental programs, and site quality often achieved statistical significance. In U2D models, successful independent variables included urban rents and costs, zoning issues concerning forestland loss, site quality, urban proximity, population, and income. F2NF models high success variables were found to be agricultural rents, site quality, population, and income. This meta-analysis provides insight into the general success of econometric independent variables for future forest use or cover change research. The second part of this dissertation developed a method for predicting area estimates and spatial distribution of PWT in the US South. This technique determined land use from USFS Forest Inventory and Analysis (FIA) and land cover from the National Land Cover Database (NLCD). Three dependent variable forms (DV Forms) were derived from the FIA data: DV Form 1, timberland, other; DV Form 2, short timberland, tall timberland, agriculture, other; and DV Form 3, short hardwood (HW) timberland, tall HW timberland, short softwood (SW) timberland, tall SW timberland, agriculture, other. The prediction accuracy of each DV Form was investigated using both random forest model and logistic regression model specifications and data optimization techniques. Model verification employing a "leave-group-out" Monte Carlo simulation determined the selection of a stratified version of the random forest model using one-year NLCD observations with an overall accuracy of 0.53-0.94. The lower accuracy side of the range was when predictions were made from an aggregated NLCD land cover class "grass_shrub". The selected model specification was run using 2011 NLCD and the other predictor variables to produce three levels of timberland prediction and probability maps for the US South. Spatial masks removed areas unlikely to be working forests (protected and urbanized lands) resulting in PWT maps. The area of the resulting maps compared well with USFS area estimates and masked PWT maps and had an 8-11% reduction of the USFS timberland estimate for the US South compared to the DV Form. Change analysis of the 2011 NLCD to PWT showed (1) the majority of the short timberland came from NLCD grass_shrub; (2) the majority of NLCD grass_shrub predicted into tall timberland, and (3) NLCD grass_shrub was more strongly associated with timberland in the Coastal Plain. Resulting map products provide practical analytical tools for those interested in studying the area and distribution of PWT in the US South.

A case study to quantify prediction bounds caused by model-form uncertainty of a portal frame

NASA Astrophysics Data System (ADS)

Van Buren, Kendra L.; Hall, Thomas M.; Gonzales, Lindsey M.; Hemez, François M.; Anton, Steven R.

2015-01-01

Numerical simulations, irrespective of the discipline or application, are often plagued by arbitrary numerical and modeling choices. Arbitrary choices can originate from kinematic assumptions, for example the use of 1D beam, 2D shell, or 3D continuum elements, mesh discretization choices, boundary condition models, and the representation of contact and friction in the simulation. This work takes a step toward understanding the effect of arbitrary choices and model-form assumptions on the accuracy of numerical predictions. The application is the simulation of the first four resonant frequencies of a one-story aluminum portal frame structure under free-free boundary conditions. The main challenge of the portal frame structure resides in modeling the joint connections, for which different modeling assumptions are available. To study this model-form uncertainty, and compare it to other types of uncertainty, two finite element models are developed using solid elements, and with differing representations of the beam-to-column and column-to-base plate connections: (i) contact stiffness coefficients or (ii) tied nodes. Test-analysis correlation is performed to compare the lower and upper bounds of numerical predictions obtained from parametric studies of the joint modeling strategies to the range of experimentally obtained natural frequencies. The approach proposed is, first, to characterize the experimental variability of the joints by varying the bolt torque, method of bolt tightening, and the sequence in which the bolts are tightened. The second step is to convert what is learned from these experimental studies to models that "envelope" the range of observed bolt behavior. We show that this approach, that combines small-scale experiments, sensitivity analysis studies, and bounding-case models, successfully produces lower and upper bounds of resonant frequency predictions that match those measured experimentally on the frame structure. (Approved for unlimited, public release, LA-UR-13-27561).

Experimental and analytical investigation of a freezing point depressant fluid ice protection system. M.S. Thesis. Final Report

NASA Technical Reports Server (NTRS)

Albright, A. E.

1984-01-01

A glycol-exuding porous leading edge ice protection system was tested in the NASA Icing Research Tunnel. Stainless steel mesh, laser drilled titanium, and composite panels were tested on two general aviation wing sections. Two different glycol-water solutions were evaluated. Minimum glycol flow rates required for anti-icing were obtained as a function of angle of attack, liquid water content, volume median drop diameter, temperature, and velocity. Ice accretions formed after five minutes of icing were shed in three minutes or less using a glycol fluid flow equal to the anti-ice flow rate. Two methods of predicting anti-ice flow rates are presented and compared with a large experimental data base of anti-ice flow rates over a wide range of icing conditions. The first method presented in the ADS-4 document typically predicts flow rates lower than the experimental flow rates. The second method, originally published in 1983, typically predicts flow rates up to 25 percent higher than the experimental flow rates. This method proved to be more consistent between wing-panel configurations. Significant correlation coefficients between the predicted flow rates and the experimental flow rates ranged from .867 to .947.

Possible Causes of Double-BSRs on the Hikurangi Margin, New Zealand

NASA Astrophysics Data System (ADS)

Pecher, I. A.; Mountjoy, J. J.; Crutchley, G. J.; Krastel, S.; Koch, S.; Dannowski, A.; Bialas, J.; Henrys, S. A.

2014-12-01

Bottom Simulating Reflections (BSRs) are commonly thought to be caused by free gas at the base of gas hydrate stability (BGHS). BSRs usually occur at the pressure-temperature conditions for the phase boundary of gas hydrate, which depends on gas composition, pore water chemistry, and various other factors. Hence, BSRs should only occur at a single depth level beneath the seafloor. At several locations worldwide however, double and multiple BSRs have been observed. We have recently discovered localized double-BSRs on the Hikurangi Margin east of New Zealand and present first results from studying the possible origin of these double-BSRs. Both BSRs display negative polarity compared to the seafloor ruling out diagenetic origins. The deeper BSR (BSR-2) is found to be anomalously deep, while the shallower BSR (BSR-1) is at similar depths as BSRs regionally. BSR-2 and BSR-1 are clearly separated on seismic lines from east to west, while they converge from north to south. We propose two possible models for formation of these double-BSRs: 1. Uplift leads to depressurization and an upward movement of the BGHS with respect to the seafloor. BSR-1 may have formed at the new BGHS while immobile gas may remain in place at the original level of the BGHS causing BSR-2. 2. Thermogenic gas may leak from a deeper hydrocarbon reservoir. Gas mixes of thermogenic origin are predicted to form hydrate that is more stable than pure methane hydrate, in particular if the mix contains gases that lead to formation of Structure-II hydrate. BSR-2 may form at a level of the BGHS for a more stable gas mix; residual gases may migrate further until they reach the phase boundary for less stable hydrates at BSR-1. We currently slightly favour uplift as cause of the double-BSRs largely because of the smooth topography of BSR-2: Small-scale lateral variations of gas composition should lead to significant BSR topography. More importantly, we note that the process of fractionation of gas during hydrate formation from thermogenic gas mixes in nature is only poorly understood.

Differentiating the origin of outflow tract ventricular arrhythmia using a simple, novel approach.

PubMed

Efimova, Elena; Dinov, Borislav; Acou, Willem-Jan; Schirripa, Valentina; Kornej, Jelena; Kosiuk, Jedrzej; Rolf, Sascha; Sommer, Philipp; Richter, Sergio; Bollmann, Andreas; Hindricks, Gerhard; Arya, Arash

2015-07-01

Numerous electrocardiographic (ECG) criteria have been proposed to identify localization of outflow tract ventricular arrhythmias (OT-VAs); however, in some cases, it is difficult to accurately localize the origin of OT-VA using the surface ECG. The purpose of this study was to assess a simple criterion for localization of OT-VAs during electrophysiology study. We measured the interval from the onset of the earliest QRS complex of premature ventricular contractions (PVCs) to the distal right ventricular apical signal (the QRS-RVA interval) in 66 patients (31 men aged 53.3 ± 14.0 years; right ventricular outflow tract [RVOT] origin in 37) referred for ablation of symptomatic outflow tract PVCs. We prospectively validated this criterion in 39 patients (22 men aged 52 ± 15 years; RVOT origin in 19). Compared with patients with RVOT PVCs, the QRS-RVA interval was significantly longer in patients with left ventricular outflow tract (LVOT) PVCs (70 ± 14 vs 33.4±10 ms, P < .001). Receiver operating characteristic analysis showed that a QRS-RVA interval ≥49 ms had sensitivity, specificity, and positive and negative predictive values of 100%, 94.6%, 93.5%, and 100%, respectively, for prediction of an LVOT origin. The same analysis in the validation cohort showed sensitivity, specificity, and positive and negative predictive values of 94.7%, 95%, 95%, and 94.7%, respectively. When these data were combined, a QRS-RVA interval ≥49 ms had sensitivity, specificity, and positive and negative predictive values of 98%, 94.6%, 94.1%, and 98.1%, respectively, for prediction of an LVOT origin. A QRS-RVA interval ≥49 ms suggests an LVOT origin. The QRS-RVA interval is a simple and accurate criterion for differentiating the origin of outflow tract arrhythmia during electrophysiology study; however, the accuracy of this criterion in identifying OT-VA from the right coronary cusp is limited. Copyright © 2015 Heart Rhythm Society. Published by Elsevier Inc. All rights reserved.

Optical Characterization of Molecular Contaminant Films

NASA Technical Reports Server (NTRS)

Visentine, James T.

2007-01-01

A semi-empirical method of optical characterization of thin contaminant films on surfaces of optical components has been conceived. The method was originally intended for application to films that become photochemically deposited on such optical components as science windows, lenses, prisms, thinfilm radiators, and glass solar-cell covers aboard spacecraft and satellites in orbit. The method should also be applicable, with suitable modifications, to thin optical films (whether deposited deliberately or formed as contaminants) on optical components used on Earth in the computer microchip laser communications and thin-film industries. The method is expected to satisfy the need for a means of understanding and predicting the reductions in spectral transmittance caused by contaminant films and the consequent deterioration of performances of sensitive optical systems. After further development, this method could become part of the basis of a method of designing optical systems to minimize or compensate for the deleterious effects of contaminant films. In the original outer-space application, these deleterious effects are especially pronounced because after photochemical deposition, the films become darkened by further exposure to solar vacuum ultraviolet (VUV) radiation. In this method, thin contaminant films are theoretically modeled as thin optical films, characterized by known or assumed values of thickness, index of refraction, and absorption coefficient, that form on the outer surfaces of the original antireflection coating on affected optical components. The assumed values are adjusted as needed to make actual spectral transmittance values approximate observed ones as closely as possible and to correlate these values with amounts of VUV radiation to which the optical components have been exposed. In an initial study, the method was applied in correlating measured changes in transmittance of high-purity fused silica photochemically coated with silicone films of various measured thicknesses and exposed to various measured amounts of VUV radiation. In each case, it was found to be possible to select an index of refraction and absorption coefficient that made the ultraviolet, visible, and infrared transmittance changes predicted by the model match the corresponding measured transmittance changes almost exactly.

43 CFR 17.11 - Effect on other regulations; forms and instructions.

Code of Federal Regulations, 2014 CFR

2014-10-01

... Race, Color, or National Origin § 17.11 Effect on other regulations; forms and instructions. (a) Effect... on the grounds of race, color, or national origin under any program to which this regulation applies... grounds of race, color, or national origin in any program or situation to which this part is inapplicable...

43 CFR 17.11 - Effect on other regulations; forms and instructions.

Code of Federal Regulations, 2013 CFR

2013-10-01

... Race, Color, or National Origin § 17.11 Effect on other regulations; forms and instructions. (a) Effect... on the grounds of race, color, or national origin under any program to which this regulation applies... grounds of race, color, or national origin in any program or situation to which this part is inapplicable...

43 CFR 17.11 - Effect on other regulations; forms and instructions.

Code of Federal Regulations, 2010 CFR

2010-10-01

... Race, Color, or National Origin § 17.11 Effect on other regulations; forms and instructions. (a) Effect... on the grounds of race, color, or national origin under any program to which this regulation applies... grounds of race, color, or national origin in any program or situation to which this part is inapplicable...

43 CFR 17.11 - Effect on other regulations; forms and instructions.

Code of Federal Regulations, 2012 CFR

2012-10-01

... Race, Color, or National Origin § 17.11 Effect on other regulations; forms and instructions. (a) Effect... on the grounds of race, color, or national origin under any program to which this regulation applies... grounds of race, color, or national origin in any program or situation to which this part is inapplicable...

43 CFR 17.11 - Effect on other regulations; forms and instructions.

Code of Federal Regulations, 2011 CFR

2011-10-01

... Race, Color, or National Origin § 17.11 Effect on other regulations; forms and instructions. (a) Effect... on the grounds of race, color, or national origin under any program to which this regulation applies... grounds of race, color, or national origin in any program or situation to which this part is inapplicable...

G4RNA: an RNA G-quadruplex database

PubMed Central

Garant, Jean-Michel; Luce, Mikael J.; Scott, Michelle S.

2015-01-01

Abstract G-quadruplexes (G4) are tetrahelical structures formed from planar arrangement of guanines in nucleic acids. A simple, regular motif was originally proposed to describe G4-forming sequences. More recently, however, formation of G4 was discovered to depend, at least in part, on the contextual backdrop of neighboring sequences. Prediction of G4 folding is thus becoming more challenging as G4 outlier structures, not described by the originally proposed motif, are increasingly reported. Recent observations thus call for a comprehensive tool, capable of consolidating the expanding information on tested G4s, in order to conduct systematic comparative analyses of G4-promoting sequences. The G4RNA Database we propose was designed to help meet the need for easily-retrievable data on known RNA G4s. A user-friendly, flexible query system allows for data retrieval on experimentally tested sequences, from many separate genes, to assess G4-folding potential. Query output sorts data according to sequence position, G4 likelihood, experimental outcomes and associated bibliographical references. G4RNA also provides an ideal foundation to collect and store additional sequence and experimental data, considering the growing interest G4s currently generate. Database URL: scottgroup.med.usherbrooke.ca/G4RNA PMID:26200754

Promotion of malignant phenotype after disruption of the three-dimensional structure of cultured spheroids from colorectal cancer.

PubMed

Piulats, Jose M; Kondo, Jumpei; Endo, Hiroko; Ono, Hiromasa; Hagihara, Takeshi; Okuyama, Hiroaki; Nishizawa, Yasuko; Tomita, Yasuhiko; Ohue, Masayuki; Okita, Kouki; Oyama, Hidejiro; Bono, Hidemasa; Masuko, Takashi; Inoue, Masahiro

2018-03-23

Individual and small clusters of cancer cells may detach from the edges of a main tumor and invade vessels, which can act as the origin of metastasis; however, the mechanism for this phenomenon is not well understood. Using cancer tissue-originated spheroids, we studied whether disturbing the 3D architecture of cancer spheroids can provoke the reformation process and progression of malignancy. We developed a mechanical disruption method to achieve homogenous disruption of the spheroids while maintaining cell-cell contact. After the disruption, 9 spheroid lines from 9 patient samples reformed within a few hours, and 3 of the 9 lines exhibited accelerated spheroid growth. Marker expression, spheroid forming capacity, and tumorigenesis indicated that stemness increased after spheroid disruption. In addition, the spheroid forming capacity increased in 6 of 11 spheroid lines. The disruption signature determined by gene expression profiling supported the incidence of remodeling and predicted the prognosis of patients with colorectal cancer. Furthermore, WNT and HER3 signaling were increased in the reformed spheroids, and suppression of these signaling pathways attenuated the increased proliferation and stemness after the disruption. Overall, the disruption and subsequent reformation of cancer spheroids promoted malignancy-related phenotypes through the activation of the WNT and ERBB pathways.

Promotion of malignant phenotype after disruption of the three-dimensional structure of cultured spheroids from colorectal cancer

PubMed Central

Endo, Hiroko; Ono, Hiromasa; Hagihara, Takeshi; Okuyama, Hiroaki; Nishizawa, Yasuko; Tomita, Yasuhiko; Ohue, Masayuki; Okita, Kouki; Oyama, Hidejiro; Bono, Hidemasa; Masuko, Takashi; Inoue, Masahiro

2018-01-01

Individual and small clusters of cancer cells may detach from the edges of a main tumor and invade vessels, which can act as the origin of metastasis; however, the mechanism for this phenomenon is not well understood. Using cancer tissue-originated spheroids, we studied whether disturbing the 3D architecture of cancer spheroids can provoke the reformation process and progression of malignancy. We developed a mechanical disruption method to achieve homogenous disruption of the spheroids while maintaining cell–cell contact. After the disruption, 9 spheroid lines from 9 patient samples reformed within a few hours, and 3 of the 9 lines exhibited accelerated spheroid growth. Marker expression, spheroid forming capacity, and tumorigenesis indicated that stemness increased after spheroid disruption. In addition, the spheroid forming capacity increased in 6 of 11 spheroid lines. The disruption signature determined by gene expression profiling supported the incidence of remodeling and predicted the prognosis of patients with colorectal cancer. Furthermore, WNT and HER3 signaling were increased in the reformed spheroids, and suppression of these signaling pathways attenuated the increased proliferation and stemness after the disruption. Overall, the disruption and subsequent reformation of cancer spheroids promoted malignancy-related phenotypes through the activation of the WNT and ERBB pathways. PMID:29662620

Comet 81P/wild 2 under a microscope

USGS Publications Warehouse

Brownlee, D.; Tsou, P.; Aleon, J.; O'D, Alexander; Araki, T.; Bajt, S.; Baratta, G.A.; Bastien, R.; Bland, P.; Bleuet, P.; Borg, J.; Bradley, J.P.; Brearley, A.; Brenker, F.; Brennan, S.; Bridges, J.C.; Browning, N.D.; Brucato, J.R.; Bullock, E.; Burchell, M.J.; Busemann, H.; Butterworth, Anna L.; Chaussidon, M.; Cheuvront, A.; Chi, M.; Cintala, M.J.; Clark, B. C.; Clemett, S.J.; Cody, G.; Colangeli, L.; Cooper, G.; Cordier, P.; Daghlian, C.; Dai, Z.; D'Hendecourt, L.; Djouadi, Z.; Dominguez, G.; Duxbury, T.; Dworkin, J.P.; Ebel, D.S.; Economou, T.E.; Fakra, S.; Fairey, S.A.J.; Fallon, S.; Ferrini, G.; Ferroir, T.; Fleckenstein, H.; Floss, C.; Flynn, G.; Franchi, I.A.; Fries, M.; Gainsforth, Z.; Gallien, J.-P.; Genge, M.; Gilles, M.K.; Gillet, P.; Gilmour, J.; Glavin, D.P.; Gounelle, M.; Grady, M.M.; Graham, G.A.; Grant, P.G.; Green, S.F.; Grossemy, F.; Grossman, L.; Grossman, J.N.; Guan, Y.; Hagiya, K.; Harvey, R.; Heck, P.; Herzog, G.F.; Hoppe, P.; Horz, F.; Huth, J.; Hutcheon, I.D.; Ignatyev, K.; Ishii, H.; Ito, M.; Jacob, D.; Jacobsen, C.; Jacobsen, S.; Jones, S.; Joswiak, D.; Jurewicz, A.; Kearsley, A.T.; Keller, L.P.; Khodja, H.; Kilcoyne, A.L.D.; Kissel, J.; Krot, A.; Langenhorst, F.; Lanzirotti, A.; Le, L.; Leshin, L.A.; Leitner, J.; Lemelle, L.; Leroux, H.; Liu, M.-C.; Luening, K.; Lyon, I.; MacPherson, G.; Marcus, M.A.; Marhas, K.; Marty, B.; Matrajt, G.; McKeegan, K.; Meibom, A.; Mennella, V.; Messenger, K.; Messenger, S.; Mikouchi, T.; Mostefaoui, S.; Nakamura, T.; Nakano, T.; Newville, M.; Nittler, L.R.; Ohnishi, I.; Ohsumi, K.; Okudaira, K.; Papanastassiou, D.A.; Palma, R.; Palumbo, M.E.; Pepin, R.O.; Perkins, D.; Perronnet, M.; Pianetta, P.; Rao, W.; Rietmeijer, F.J.M.; Robert, F.; Rost, D.; Rotundi, A.; Ryan, R.; Sandford, S.A.; Schwandt, C.S.; See, T.H.; Schlutter, D.; Sheffield-Parker, J.; Simionovici, A.; Simon, S.; Sitnitsky, I.; Snead, C.J.; Spencer, M.K.; Stadermann, F.J.; Steele, A.; Stephan, T.

2006-01-01

The Stardust spacecraft collected thousands of particles from comet 81P/Wild 2 and returned them to Earth for laboratory study. The preliminary examination of these samples shows that the nonvolatile portion of the comet is an unequilibrated assortment of materials that have both presolar and solar system origin. The comet contains an abundance of silicate grains that are much larger than predictions of interstellar grain models, and many of these are high-temperature minerals that appear to have formed in the inner regions of the solar nebula. Their presence in a comet proves that the formation of the solar system included mixing on the grandest scales.

A model of regional primary production for use with coarse resolution satellite data

NASA Technical Reports Server (NTRS)

Prince, S. D.

1991-01-01

A model of crop primary production, which was originally developed to relate the amount of absorbed photosynthetically active radiation (APAR) to net production in field studies, is discussed in the context of coarse resolution regional remote sensing of primary production. The model depends on an approximately linear relationship between APAR and the normalized difference vegetation index. A more comprehensive form of the conventional model is shown to be necessary when different physiological types of plants or heterogeneous vegetation types occur within the study area. The predicted variable in the new model is total assimilation (net production plus respiration) rather than net production alone or harvest yield.

Leaf and Life History Traits Predict Plant Growth in a Green Roof Ecosystem

PubMed Central

Lundholm, Jeremy; Heim, Amy; Tran, Stephanie; Smith, Tyler

2014-01-01

Green roof ecosystems are constructed to provide services such as stormwater retention and urban temperature reductions. Green roofs with shallow growing media represent stressful conditions for plant survival, thus plants that survive and grow are important for maximizing economic and ecological benefits. While field trials are essential for selecting appropriate green roof plants, we wanted to determine whether plant leaf traits could predict changes in abundance (growth) to provide a more general framework for plant selection. We quantified leaf traits and derived life-history traits (Grime’s C-S-R strategies) for 13 species used in a four-year green roof experiment involving five plant life forms. Changes in canopy density in monocultures and mixtures containing one to five life forms were determined and related to plant traits using multiple regression. We expected traits related to stress-tolerance would characterize the species that best grew in this relatively harsh setting. While all species survived to the end of the experiment, canopy species diversity in mixture treatments was usually much lower than originally planted. Most species grew slower in mixture compared to monoculture, suggesting that interspecific competition reduced canopy diversity. Species dominant in mixture treatments tended to be fast-growing ruderals and included both native and non-native species. Specific leaf area was a consistently strong predictor of final biomass and the change in abundance in both monoculture and mixture treatments. Some species in contrasting life-form groups showed compensatory dynamics, suggesting that life-form mixtures can maximize resilience of cover and biomass in the face of environmental fluctuations. This study confirms that plant traits can be used to predict growth performance in green roof ecosystems. While rapid canopy growth is desirable for green roofs, maintenance of species diversity may require engineering of conditions that favor less aggressive species. PMID:24978031

Origin of the Two Scales of Wind Ripples on Mars

NASA Technical Reports Server (NTRS)

Lapotre, Mathieu G. A.; Ewing, Ryan C.; Lamb, Michael P.; Fischer, Woodward W.; Grotzinger, John P.; Rubin, David M.; Lewis, Kevin W.; Day, Mackenzie; Gupta, Sanjeev; Banham, Steeve G.;

Origin of the two scales of wind ripples on Mars

NASA Astrophysics Data System (ADS)

Lapotre, M. G. A.; Ewing, R. C.; Lamb, M. P.; Fischer, W. W.; Grotzinger, J. P.; Rubin, D. M.; Lewis, K. W.; Ballard, M.; Day, M. D.; Gupta, S.; Banham, S.; Bridges, N.; Des Marais, D. J.; Fraeman, A. A.; Grant, J. A., III; Ming, D. W.; Mischna, M.; Rice, M. S.; Sumner, D. Y.; Vasavada, A. R.; Yingst, R. A.

2016-12-01

Earth's sandy deserts host two main types of bedforms - decimeter-scale ripples and larger dunes. Years of orbital observations on Mars also confirmed the existence of two modes of active eolian bedforms - meter-scale ripples, and dunes. By analogy to terrestrial ripples, which are thought to form from a grain mechanism, it was hypothesized that large martian ripples also formed from grain impacts, but spaced further apart due to elongated saltation trajectories from the lower martian gravity and different atmospheric properties. However, the Curiosity rover recently documented the coexistence of three scales of bedforms in Gale crater. Because a grain impact mechanism cannot readily explain two distinct and coeval ripple modes in similar sand sizes, a new mechanism seems to be required to explain one of the scales of ripples. Small ripples are most similar to Earth's impact ripples, with straight crests and subdued profiles. In contrast, large martian ripples are sinuous and asymmetric, with lee slopes dominated by grain flows and grainfall deposits. Thus, large martian ripples resemble current ripples formed underwater on Earth, suggesting that they may form from a fluid-drag mechanism. To test this hypothesis, we develop a scaling relation to predict the spacing of fluid-drag ripples from an extensive flume data compilation. The size of large martian ripples is predicted by our scaling relation when adjusted for martian atmospheric properties. Specifically, we propose that the wavelength of martian wind-drag ripples arises from the high kinematic viscosity of the low-density atmosphere. Because fluid density controls drag-ripple size, our scaling relation can help constrain paleoatmospheric density from wind-drag ripple stratification.

The linguistics of schizophrenia: thought disturbance as language pathology across positive symptoms

PubMed Central

Hinzen, Wolfram; Rosselló, Joana

2015-01-01

We hypothesize that linguistic (dis-)organization in the schizophrenic brain plays a more central role in the pathogenesis of this disease than commonly supposed. Against the standard view, that schizophrenia is a disturbance of thought or selfhood, we argue that the origins of the relevant forms of thought and selfhood at least partially depend on language. The view that they do not is premised by a theoretical conception of language that we here identify as ‘Cartesian’ and contrast with a recent ‘un-Cartesian’ model. This linguistic model empirically argues for both (i) a one-to-one correlation between human-specific thought or meaning and forms of grammatical organization, and (ii) an integrative and co-dependent view of linguistic cognition and its sensory-motor dimensions. Core dimensions of meaning mediated by grammar on this model specifically concern forms of referential and propositional meaning. A breakdown of these is virtually definitional of core symptoms. Within this model the three main positive symptoms of schizophrenia fall into place as failures in language-mediated forms of meaning, manifest either as a disorder of speech perception (Auditory Verbal Hallucinations), abnormal speech production running without feedback control (Formal Thought Disorder), or production of abnormal linguistic content (Delusions). Our hypothesis makes testable predictions for the language profile of schizophrenia across symptoms; it simplifies the cognitive neuropsychology of schizophrenia while not being inconsistent with a pattern of neurocognitive deficits and their correlations with symptoms; and it predicts persistent findings on disturbances of language-related circuitry in the schizophrenic brain. PMID:26236257

The Structure of Dark Matter Halos in Dwarf Galaxies

NASA Astrophysics Data System (ADS)

Burkert, A.

1995-07-01

Recent observations indicate that dark matter halos have flat central density profiles. Cosmological simulations with nonbaryonic dark matter, however, predict self-similar halos with central density cusps. This contradiction has lead to the conclusion that dark matter must be baryonic. Here it is shown that the dark matter halos of dwarf spiral galaxies represent a one-parameter family with self-similar density profiles. The observed global halo parameters are coupled with each other through simple scaling relations which can be explained by the standard cold dark matter model if one assumes that all the halos formed from density fluctuations with the same primordial amplitude. We find that the finite central halo densities correlate with the other global parameters. This result rules out scenarios where the flat halo cores formed subsequently through violent dynamical processes in the baryonic component. These cores instead provide important information on the origin and nature of dark matter in dwarf galaxies.

Cooperative Couplings between Octahedral Rotations and Ferroelectricity in Perovskites and Related Materials

NASA Astrophysics Data System (ADS)

Gu, Teng; Scarbrough, Timothy; Yang, Yurong; Íñiguez, Jorge; Bellaiche, L.; Xiang, H. J.

2018-05-01

The structure of AB O 3 perovskites is dominated by two types of unstable modes, namely, the oxygen octahedral rotation (AFD) and ferroelectric (FE) mode. It is generally believed that such AFD and FE modes tend to compete and suppress each other. Here we use first-principles methods to show that a dual nature of the FE-AFD coupling, which turns from competitive to cooperative as the AFD mode strengthens, occurs in numerous perovskite oxides. We provide a unified model of such a dual interaction by introducing novel high-order coupling terms and explain the atomistic origin of the resulting new form of ferroelectricity in terms of universal steric mechanisms. We also predict that such a novel form of ferroelectricity leads to atypical behaviors, such as an enhancement of all the three Cartesian components of the electric polarization under hydrostatic pressure and compressive epitaxial strain.

Discovery of the triple asteroidal system 87 Sylvia.

PubMed

Marchis, Franck; Descamps, Pascal; Hestroffer, Daniel; Berthier, Jérome

2005-08-11

After decades of speculation, the existence of binary asteroids has been observationally confirmed, with examples in all minor planet populations. However, no triple systems have hitherto been discovered. Here we report the unambiguous detection of a triple asteroidal system in the main belt, composed of a 280-km primary (87 Sylvia) and two small moonlets orbiting at 710 and 1,360 km. We estimate their orbital elements and use them to refine the shape of the primary body. Both orbits are equatorial, circular and prograde, suggesting a common origin. Using the orbital information to estimate its mass and density, 87 Sylvia appears to have a rubble-pile structure with a porosity of 25-60 per cent. The system was most probably formed through the disruptive collision of a parent asteroid, with the new primary resulting from accretion of fragments, while the moonlets are formed from the debris, as has been predicted previously.

Fine-grained rutile in the Gulf of Maine: Diagenetic origin, source rocks, and sedimentary environment of deposition

USGS Publications Warehouse

Valentine, P.C.; Commeau, J.A.

1990-01-01

The Gulf of Maine, an embayment of the New England margin, is floored by shallow, glacially scoured basins that are partly filled with late Pleistocene and Holocene silt and clay containing 0.7 to 1.0 wt percent TiO2 chiefly in the form of silt-size rutile. Much of the rutile in the Gulf of Maine mud probably formed diagenetically in poorly cemented Carboniferous and Triassic coarse-grained sedimentary rocks of Nova Scotia and New Brunswick after the dissolution of titanium-rich detrital minerals (ilmenite, ilmenomagnetite). The diagenesis of rutile in coarse sedimentary rocks (especially arkose and graywacke) followed by erosion, segregation, and deposition (and including recycling of fine-grained rutile from shales) can serve as a model for predicting and prospecting for unconsolidated deposits of fine-grained TiO2. -from Authors

Somatic mosaicism in Fanconi anemia: Evidence of genotypic reversion in lymphohematopoietic stem cells

PubMed Central

Gregory, John J.; Wagner, John E.; Verlander, Peter C.; Levran, Orna; Batish, Sat Dev; Eide, Cindy R.; Steffenhagen, Amy; Hirsch, Betsy; Auerbach, Arleen D.

2001-01-01

Somatic mosaicism has been observed previously in the lymphocyte population of patients with Fanconi anemia (FA). To identify the cellular origin of the genotypic reversion, we examined each lymphohematopoietic and stromal cell lineage in an FA patient with a 2815–2816ins19 mutation in FANCA and known lymphocyte somatic mosaicism. DNA extracted from individually plucked peripheral blood T cell colonies and marrow colony-forming unit granulocyte–macrophage and burst-forming unit erythroid cells revealed absence of the maternal FANCA exon 29 mutation in 74.0%, 80.3%, and 86.2% of colonies, respectively. These data, together with the absence of the FANCA exon 29 mutation in Epstein–Barr virus-transformed B cells and its presence in fibroblasts, indicate that genotypic reversion, most likely because of back mutation, originated in a lymphohematopoietic stem cell and not solely in a lymphocyte population. Contrary to a predicted increase in marrow cellularity resulting from reversion in a hematopoietic stem cell, pancytopenia was progressive. Additional evaluations revealed a partial deletion of 11q in 3 of 20 bone marrow metaphase cells. By using interphase fluorescence in situ hybridization with an MLL gene probe mapped to band 11q23 to identify colony-forming unit granulocyte–macrophage and burst-forming unit erythroid cells with the 11q deletion, the abnormal clone was exclusive to colonies with the FANCA exon 29 mutation. Thus, we demonstrate the spontaneous genotypic reversion in a lymphohematopoietic stem cell. The subsequent development of a clonal cytogenetic abnormality in nonrevertant cells suggests that ex vivo correction of hematopoietic stem cells by gene transfer may not be sufficient for providing life-long stable hematopoiesis in patients with FA. PMID:11226273

Escalated conflict in a social hierarchy

PubMed Central

Cant, M.A; English, S; Reeve, H.K; Field, J

2006-01-01

Animals that live in cooperative societies form hierarchies in which dominant individuals reap disproportionate benefits from group cooperation. The stability of these societies requires subordinates to accept their inferior status rather than engage in escalated conflict with dominants over rank. Applying the logic of animal contests to these cases predicts that escalated conflict is more likely where subordinates are reproductively suppressed, where group productivity is high, relatedness is low, and where subordinates are relatively strong. We tested these four predictions in the field on co-foundress associations of the paper wasp Polistes dominulus by inducing contests over dominance rank experimentally. Subordinates with lower levels of ovarian development, and those in larger, more productive groups, were more likely to escalate in conflict with their dominant, as predicted. Neither genetic relatedness nor relative body size had significant effects on the probability of escalation. The original dominant emerged as the winner in all except one escalated contest. The results provide the first evidence that reproductive suppression of subordinates increases the threat of escalated conflict, and hence that reproductive sharing can promote stability of the dominant–subordinate relationship. PMID:17015353

Single and double production of the Higgs boson at hadron and lepton colliders in minimal composite Higgs models

NASA Astrophysics Data System (ADS)

Kanemura, Shinya; Kaneta, Kunio; Machida, Naoki; Odori, Shinya; Shindou, Tetsuo

2016-07-01

In the composite Higgs models, originally proposed by Georgi and Kaplan, the Higgs boson is a pseudo Nambu-Goldstone boson (pNGB) of spontaneous breaking of a global symmetry. In the minimal version of such models, global SO(5) symmetry is spontaneously broken to SO(4), and the pNGBs form an isospin doublet field, which corresponds to the Higgs doublet in the Standard Model (SM). Predicted coupling constants of the Higgs boson can in general deviate from the SM predictions, depending on the compositeness parameter. The deviation pattern is determined also by the detail of the matter sector. We comprehensively study how the model can be tested via measuring single and double production processes of the Higgs boson at the LHC and future electron-positron colliders. The possibility to distinguish the matter sector among the minimal composite Higgs models is also discussed. In addition, we point out differences in the cross section of double Higgs boson production from the prediction in other new physics models.

Origin of seasonal predictability for summer climate over the Northwestern Pacific

PubMed Central

Kosaka, Yu; Xie, Shang-Ping; Lau, Ngar-Cheung; Vecchi, Gabriel A.

2013-01-01

Summer climate in the Northwestern Pacific (NWP) displays large year-to-year variability, affecting densely populated Southeast and East Asia by impacting precipitation, temperature, and tropical cyclones. The Pacific–Japan (PJ) teleconnection pattern provides a crucial link of high predictability from the tropics to East Asia. Using coupled climate model experiments, we show that the PJ pattern is the atmospheric manifestation of an air–sea coupled mode spanning the Indo-NWP warm pool. The PJ pattern forces the Indian Ocean (IO) via a westward propagating atmospheric Rossby wave. In response, IO sea surface temperature feeds back and reinforces the PJ pattern via a tropospheric Kelvin wave. Ocean coupling increases both the amplitude and temporal persistence of the PJ pattern. Cross-correlation of ocean–atmospheric anomalies confirms the coupled nature of this PJIO mode. The ocean–atmosphere feedback explains why the last echoes of El Niño–Southern Oscillation are found in the IO-NWP in the form of the PJIO mode. We demonstrate that the PJIO mode is indeed highly predictable; a characteristic that can enable benefits to society. PMID:23610388

The development of a peak-time criterion for designing controlled-release devices.

PubMed

Simon, Laurent; Ospina, Juan

2016-08-25

This work consists of estimating dynamic characteristics for topically-applied drugs when the magnitude of the flux increases to a maximum value, called peak flux, before declining to zero. This situation is typical of controlled-released systems with a finite donor or vehicle volume. Laplace transforms were applied to the governing equations and resulted in an expression for the flux in terms of the physical characteristics of the system. After approximating this function by a second-order model, three parameters of this reduced structure captured the essential features of the original process. Closed-form relationships were then developed for the peak flux and time-to-peak based on the empirical representation. Three case studies that involve mechanisms, such as diffusion, partitioning, dissolution and elimination, were selected to illustrate the procedure. The technique performed successfully as shown by the ability of the second-order flux to match the prediction of the original transport equations. A main advantage of the proposed method is that it does not require a solution of the original partial differential equations. Less accurate results were noted for longer lag times. Copyright © 2016 Elsevier B.V. All rights reserved.

Identification and Analysis of Partial Shading Breakdown Sites in CuIn xGa (1-x)Se 2 Modules

DOE Office of Scientific and Technical Information (OSTI.GOV)

Palmiotti, Elizabeth; Johnston, Steven; Gerber, Andreas

In this paper, CuIn xGa (1-x) (CIGS) mini-modules are stressed under reverse bias, resembling partial shading conditions, to predict and characterize where failures occur. Partial shading can cause permanent damage in the form of 'wormlike' defects on thin-film modules due to thermal runaway. This results in module-scale power losses. We have used dark lock-in thermography (DLIT) to spatially observe localized heating when reverse-bias breakdown occurs on various CIGS mini-modules. For better understanding of how and where these defects originated and propagated, we have developed techniques where the current is limited during reverse-bias stressing. This allows for DLIT-based detection and detailedmore » studying of the region where breakdown is initiated before thermal runaway leads to permanent damage. Statistics of breakdown sites using current-limited conditions has allowed for reasonable identification of the as-grown defects where permanent breakdown will likely originate. Scanning electron microscope results and wormlike defect analysis show that breakdown originates in defects such as small pits, craters, or cracks in the CIGS layer, and the wormlike defects propagate near the top CIGS interface.« less

Identification and Analysis of Partial Shading Breakdown Sites in CuIn xGa (1-x)Se 2 Modules

DOE PAGES

Palmiotti, Elizabeth; Johnston, Steven; Gerber, Andreas; ...

2017-12-20

In this paper, CuIn xGa (1-x) (CIGS) mini-modules are stressed under reverse bias, resembling partial shading conditions, to predict and characterize where failures occur. Partial shading can cause permanent damage in the form of 'wormlike' defects on thin-film modules due to thermal runaway. This results in module-scale power losses. We have used dark lock-in thermography (DLIT) to spatially observe localized heating when reverse-bias breakdown occurs on various CIGS mini-modules. For better understanding of how and where these defects originated and propagated, we have developed techniques where the current is limited during reverse-bias stressing. This allows for DLIT-based detection and detailedmore » studying of the region where breakdown is initiated before thermal runaway leads to permanent damage. Statistics of breakdown sites using current-limited conditions has allowed for reasonable identification of the as-grown defects where permanent breakdown will likely originate. Scanning electron microscope results and wormlike defect analysis show that breakdown originates in defects such as small pits, craters, or cracks in the CIGS layer, and the wormlike defects propagate near the top CIGS interface.« less

Retooling Predictive Relations for non-volatile PM by Comparison to Measurements

NASA Astrophysics Data System (ADS)

Vander Wal, R. L.; Abrahamson, J. P.

2015-12-01

Non-volatile particulate matter (nvPM) emissions from jet aircraft at cruise altitude are of particular interest for climate and atmospheric processes but are difficult to measure and are normally approximated. To provide such inventory estimates the present approach is to use measured, ground-based values with scaling to cruise (engine operating) conditions. Several points are raised by this approach. First is what ground based values to use. Empirical and semi-empirical approaches, such as the revised first order approximation (FOA3) and formation-oxidation (FOX) methods, each with embedded assumptions are available to calculate a ground-based black carbon concentration, CBC. Second is the scaling relation that can depend upon the ratios of fuel-air equivalence, pressure, and combustor flame temperature. We are using measured ground-based values to evaluate the accuracy of present methods towards developing alternative methods for CBCby smoke number or via a semi-empirical kinetic method for the specific engine, CFM56-2C, representative of a rich-dome style combustor, and as one of the most prevalent engine families in commercial use. Applying scaling relations to measured ground based values and comparison to measurements at cruise evaluates the accuracy of current scaling formalism. In partnership with GE Aviation, performing engine cycle deck calculations enables critical comparison between estimated or predicted thermodynamic parameters and true (engine) operational values for the CFM56-2C engine. Such specific comparisons allow tracing differences between predictive estimates for, and measurements of nvPM to their origin - as either divergence of input parameters or in the functional form of the predictive relations. Such insights will lead to development of new predictive tools for jet aircraft nvPM emissions. Such validated relations can then be extended to alternative fuels with confidence in operational thermodynamic values and functional form. Comparisons will then be made between these new predictive relationships and measurements of nvPM from alternative fuels using ground and cruise data - as collected during NASA-led AAFEX and ACCESS field campaigns, respectively.

Localization of premature ventricular contractions from the papillary muscles using the standard 12-lead electrocardiogram: a feasibility study using a novel cardiac isochrone positioning system.

PubMed

van Dam, Peter M; Boyle, Noel G; Laks, Michael M; Tung, Roderick

2016-12-01

The precise localization of the site of origin of a premature ventricular contraction (PVC) prior to ablation can facilitate the planning and execution of the electrophysiological procedure. In clinical practice, the targeted ablation site is estimated from the standard 12-lead ECG. The accuracy of this qualitative estimation has limitations, particularly in the localization of PVCs originating from the papillary muscles. Clinical available electrocardiographic imaging (ECGi) techniques that incorporate patient-specific anatomy may improve the localization of these PVCs, but require body surface maps with greater specificity for the epicardium. The purpose of this report is to demonstrate that a novel cardiac isochrone positioning system (CIPS) program can accurately detect the specific location of the PVC on the papillary muscle using only a 12-lead ECG. Cardiac isochrone positioning system uses three components: (i) endocardial and epicardial cardiac anatomy and torso geometry derived from MRI, (ii) the patient-specific electrode positions derived from an MRI model registered 3D image, and (iii) the 12-lead ECG. CIPS localizes the PVC origin by matching the anatomical isochrone vector with the ECG vector. The predicted PVC origin was compared with the site of successful ablation or stimulation. Three patients who underwent electrophysiological mapping and ablation of PVCs originating from the papillary muscles were studied. CIPS localized the PVC origin for all three patients to the correct papillary muscle and specifically to the base, mid, or apical region. A simplified form of ECGi utilizing only 12 standard electrocardiographic leads may facilitate accurate localization of the origin of papillary muscle PVCs. Published on behalf of the European Society of Cardiology. All rights reserved. © The Author 2016. For Permissions, please email: journals.permissions@oup.com.

76 FR 28444 - Agency Information Collection Activities: Form G-884, Extension of a Currently Approved...

Federal Register 2010, 2011, 2012, 2013, 2014

2011-05-17

... Original Documents; OMB Control No. 1615-0100. The Department of Homeland Security, U.S. Citizenship and...: Request for the Return of Original Documents. (3) Agency form number, if any, and the applicable component... person is eligible to obtain original document(s) contained in an alien file. (5) An estimate of the...

The Stellar IMF from Isothermal MHD Turbulence

NASA Astrophysics Data System (ADS)

Haugbølle, Troels; Padoan, Paolo; Nordlund, Åke

2018-02-01

We address the turbulent fragmentation scenario for the origin of the stellar initial mass function (IMF), using a large set of numerical simulations of randomly driven supersonic MHD turbulence. The turbulent fragmentation model successfully predicts the main features of the observed stellar IMF assuming an isothermal equation of state without any stellar feedback. As a test of the model, we focus on the case of a magnetized isothermal gas, neglecting stellar feedback, while pursuing a large dynamic range in both space and timescales covering the full spectrum of stellar masses from brown dwarfs to massive stars. Our simulations represent a generic 4 pc region within a typical Galactic molecular cloud, with a mass of 3000 M ⊙ and an rms velocity 10 times the isothermal sound speed and 5 times the average Alfvén velocity, in agreement with observations. We achieve a maximum resolution of 50 au and a maximum duration of star formation of 4.0 Myr, forming up to a thousand sink particles whose mass distribution closely matches the observed stellar IMF. A large set of medium-size simulations is used to test the sink particle algorithm, while larger simulations are used to test the numerical convergence of the IMF and the dependence of the IMF turnover on physical parameters predicted by the turbulent fragmentation model. We find a clear trend toward numerical convergence and strong support for the model predictions, including the initial time evolution of the IMF. We conclude that the physics of isothermal MHD turbulence is sufficient to explain the origin of the IMF.

48 CFR 1852.246-72 - Material inspection and receiving report.

Code of Federal Regulations, 2010 CFR

2010-10-01

... Receiving Report (DD Form 250 series) prepared in __ [Insert number of copies, including original] copies, an original and __ copies [Insert number of copies]. (b) The Contractor shall prepare the DD Form 250 in accordance with NASA FAR Supplement 1846.6. The Contractor shall enclose the copies of the DD Form...

77 FR 45593 - Proposed Agency Information Collection

Federal Register 2010, 2011, 2012, 2013, 2014

2012-08-01

... Report of the Origin of Natural Gas Liquids, and Form EIA-816, Monthly Natural Gas Liquids Report, as....: NEW; (2) Information Collection Request Title: Monthly Gas Processing and Liquids Report; (3) Type of... collection form that is a combination of the Form EIA-64A, Annual Report of the Origin of Natural Gas Liquids...

Perceived Discrimination, Perceived Stress, and Mental and Physical Health among Mexican-Origin Adults

ERIC Educational Resources Information Center

Flores, Elena; Tschann, Jeanne M.; Dimas, Juanita M.; Bachen, Elizabeth A.; Pasch, Lauri A.; de Groat, Cynthia L.

2008-01-01

This study provided a test of the minority status stress model by examining whether perceived discrimination would directly affect health outcomes even when perceived stress was taken into account among 215 Mexican-origin adults. Perceived discrimination predicted depression and poorer general health, and marginally predicted health symptoms, when…

The electrolytical processes in dirty ices: implications for origin and chemistry of minor bodies and related objects.

PubMed

Drobyshevski, E M; Chesnakov, V A; Sinitsyn, V V

1995-01-01

Many moonlike bodies (M approximately or = 1 Moon) beyond the Martian orbit contain large amounts of dirty ice (approximately 50%) forming thick mantle with the solid phase thermal convection. When a body moves through the inter- or nearplanetary magnetized plasma, electric current is generated in the body and its environment. The current passing through a dirty ice containing up to 10% of organic admixtures produces a lot of electrochemical effects which have a profound impact on its composition. At this stage one can hardly say something definite concerning changes experienced by organics. The changes must occur inevitably and can be of a rather unexpected and far-reaching nature, so deserving a close study. Another obvious effect is a volumetric electrolysis of ice containing alien inclusions. The electrolysis products accumulate in ice in the form of a solid solution which is capable of detonation at 15-20 wt.% of 2H2 + O2. If M > or = 1 Moon (Galilean satellites, Titan), the body loses in explosion a part of its mass in the form of vapor and ice fragments (=short-period comet nuclei), whereas if M < or = 0.2 Moon, the body breaks up totally (the Main Belt asteroids origin approximately 3.9 Byr ago). 2H2 + O2 containing cometary nuclei are capable of burning or suffer new explosions when receiving an additional energy. The combustion in the sublimation products containing also light organics and 2H2 + O2 explains unexpected energetics and nearnuclear chemistry of Comet P/Halley (e.g. great abundances of negative and positive ions, atomic carbon, CO over CO2, origin of CHON particles etc) and its distant outbursts correlated, possibly, with the Solar activity. Thus the electrochemical processes in the dirty ice with organics, along with its subsequent thermal, radiative etc. processing, open up new potentials for explanation and prediction of quite unexpected discoveries.

Colony Dimorphism in Bradyrhizobium Strains

PubMed Central

Sylvester-Bradley, Rosemary; Thornton, Philip; Jones, Peter

1988-01-01

Ten isolates of Bradyrhizobium spp. which form two colony types were studied; the isolates originated from a range of legume species. The two colony types differed in the amount of gum formed or size or both, depending on the strain. Whole 7-day-old colonies of each type were subcultured to determine the proportion of cells which had changed to the other type. An iterative computerized procedure was used to determine the rate of switching per generation between the two types and to predict proportions reached at equilibrium for each strain. The predicted proportions of the wetter (more gummy) or larger colony type at equilibrium differed significantly between strains, ranging from 0.9999 (strain CIAT 2383) to 0.0216 (strain CIAT 2469), because some strains switched faster from dry to wet (or small to large) and others switched faster from wet to dry (or large to small). Predicted equilibrium was reached after about 140 generations in strain USDA 76. In all but one strain (CIAT 3030) the growth rate of the wetter colony type was greater than or similar to that of the drier type. The mean difference in generation time between the two colony types was 0.37 h. Doubling times calculated for either colony type after 7 days of growth on the agar surface ranged from 6.0 to 7.3 h. The formation of two persistent colony types by one strain (clonal or colony dimorphism) may be a common phenomenon among Bradyrhizobium strains. Images PMID:16347599

Anharmonic vibrational analysis of s-trans and s-cis conformers of acryloyl fluoride using numerical-analytic Van Vleck operator perturbation theory

NASA Astrophysics Data System (ADS)

Krasnoshchekov, Sergey V.; Craig, Norman C.; Koroleva, Lidiya A.; Stepanov, Nikolay F.

2018-01-01

A new gas-phase infrared (IR) spectrum of acryloyl fluoride (ACRF, CH2dbnd CHsbnd CFdbnd O) with a resolution of 0.1 cm- 1 in the range 4000-450 cm- 1 was measured. Theoretical ab initio molecular structures, full quartic potential energy surfaces (PES), and cubic surfaces of dipole moments and polarizability tensor components (electro-optical properties, EOP) of the s-trans and s-cis conformers of the ACRF were calculated by the second-order Møller-Plesset electronic perturbation theory with a correlation consistent Dunning triple-ζ basis set. The numerical-analytic implementation of the second-order operator canonical Van Vleck perturbation theory was employed for predicting anharmonic IR and Raman scattering (RS) spectra of ACRF. To improve the anharmonic predictions, harmonic frequencies were replaced by their counterparts evaluated with the higher-level CCSD(T)/cc-pVTZ model, to form a ;hybrid; PES. The original operator representation of the Hamiltonian is analytically reduced to a quasi-diagonal form, integrated in the harmonic oscillator basis and diagonalized to account for strong resonance couplings. Double canonical transformations of EOP expansions enabled prediction of integral intensities of both fundamental and multi-quanta transitions in IR/RS spectra. Enhanced band shape analysis reinforced the assignments. A thorough interpretation of the new IR experimental spectra and existing matrix-isolation literature data for the mixture of two conformers of ACRF was accomplished, and a number of assignments clarified.

A conserved predicted pseudoknot in the NS2A-encoding sequence of West Nile and Japanese encephalitis flaviviruses suggests NS1' may derive from ribosomal frameshifting

PubMed Central

Firth, Andrew E; Atkins, John F

2009-01-01

Japanese encephalitis, West Nile, Usutu and Murray Valley encephalitis viruses form a tight subgroup within the larger Flavivirus genus. These viruses utilize a single-polyprotein expression strategy, resulting in ~10 mature proteins. Plotting the conservation at synonymous sites along the polyprotein coding sequence reveals strong conservation peaks at the very 5' end of the coding sequence, and also at the 5' end of the sequence encoding the NS2A protein. Such peaks are generally indicative of functionally important non-coding sequence elements. The second peak corresponds to a predicted stable pseudoknot structure whose biological importance is supported by compensatory mutations that preserve the structure. The pseudoknot is preceded by a conserved slippery heptanucleotide (Y CCU UUU), thus forming a classical stimulatory motif for -1 ribosomal frameshifting. We hypothesize, therefore, that the functional importance of the pseudoknot is to stimulate a portion of ribosomes to shift -1 nt into a short (45 codon), conserved, overlapping open reading frame, termed foo. Since cleavage at the NS1-NS2A boundary is known to require synthesis of NS2A in cis, the resulting transframe fusion protein is predicted to be NS1-NS2AN-term-FOO. We hypothesize that this may explain the origin of the previously identified NS1 'extension' protein in JEV-group flaviviruses, known as NS1'. PMID:19196463

Loops in hierarchical channel networks

NASA Astrophysics Data System (ADS)

Katifori, Eleni; Magnasco, Marcelo

2012-02-01

Nature provides us with many examples of planar distribution and structural networks having dense sets of closed loops. An archetype of this form of network organization is the vasculature of dicotyledonous leaves, which showcases a hierarchically-nested architecture. Although a number of methods have been proposed to measure aspects of the structure of such networks, a robust metric to quantify their hierarchical organization is still lacking. We present an algorithmic framework that allows mapping loopy networks to binary trees, preserving in the connectivity of the trees the architecture of the original graph. We apply this framework to investigate computer generated and natural graphs extracted from digitized images of dicotyledonous leaves and animal vasculature. We calculate various metrics on the corresponding trees and discuss the relationship of these quantities to the architectural organization of the original graphs. This algorithmic framework decouples the geometric information from the metric topology (connectivity and edge weight) and it ultimately allows us to perform a quantitative statistical comparison between predictions of theoretical models and naturally occurring loopy graphs.

Further explorations of cosmogonic shadow effects in the Saturnian rings

NASA Technical Reports Server (NTRS)

Alfven, H.; Axnaes, I.; Brenning, N.; Lindqvist, P. A.

1985-01-01

The mass distribution in the Saturnian ring system is compared with predictions from the cosmogonic theory of Alfven and Arrhenius (1975) in which matter in the rings was once a magnetized plasma, with gravitation balanced by centrifugal force and by the magnetic field. As the plasma is neutralized, the magnetic force disappears and the matter can be shown to fall in to a distance 2/3 of the original. This supports the cosmogonic shadow effect, also demonstrated for the astroidal belt and in the large scale structure of the Saturnian ring system. The relevance of the comogonic shadow effect for parts of the finer structures of the Saturnian ring system is investigated. It is shown that many structures of the present ring system can be understood as shadows and antishadows of cosmogonic origin. These appear in the form of double rings centered around a position a factor 0.64 (slightly 2/3) closer to Saturn than the causing feature.

Survival and reversion of a stable L form in soil

NASA Technical Reports Server (NTRS)

Horwitz, A. H.; Casida, L. E., Jr.

1978-01-01

The stable L form of Agromyces ramosus reverted to a bacterial form when incubated in sterilized soil. The cellular and colonial morphology of this bacterial form resembled that of the original parent bacterial form. The two forms differed, however, in that the revertant maintained its bacterial form when transferred onto a low-salt (NaCl) medium but was virtually completely induced into the L-form state on a high-salt medium. The original parent bacterial form was not sensitive to salt. The possibility is discussed that an L-form - bacterial-form cycle for this bacterium might occur naturally in soil. This cycle would be mediated by fluctuations in local salt concentrations in the soil.

Hybrid experimental/analytical models of structural dynamics - Creation and use for predictions

NASA Technical Reports Server (NTRS)

Balmes, Etienne

1993-01-01

An original complete methodology for the construction of predictive models of damped structural vibrations is introduced. A consistent definition of normal and complex modes is given which leads to an original method to accurately identify non-proportionally damped normal mode models. A new method to create predictive hybrid experimental/analytical models of damped structures is introduced, and the ability of hybrid models to predict the response to system configuration changes is discussed. Finally a critical review of the overall methodology is made by application to the case of the MIT/SERC interferometer testbed.

The efficacy of the reverse contrast mode in digital radiography for the detection of proximal dentinal caries

PubMed Central

Miri, Shimasadat; Mehralizadeh, Sandra; Sadri, Donya; Motamedi, Mahmood Reza Kalantar

2015-01-01

Purpose This study evaluated the diagnostic accuracy of the reverse contrast mode in intraoral digital radiography for the detection of proximal dentinal caries, in comparison with the original digital radiographs. Materials and Methods Eighty extracted premolars with no clinically apparent caries were selected, and digital radiographs of them were taken separately in standard conditions. Four observers examined the original radiographs and the same radiographs in the reverse contrast mode with the goal of identifying proximal dentinal caries. Microscopic sections 5 µm in thickness were prepared from the teeth in the mesiodistal direction. Four slides prepared from each sample used as the diagnostic gold standard. The data were analyzed using SPSS (α=0.05). Results Our results showed that the original radiographs in order to identify proximal dentinal caries had the following values for sensitivity, specificity, positive predictive value, negative predictive value, and accuracy, respectively: 72.5%, 90%, 87.2%, 76.5%, and 80.9%. For the reverse contrast mode, however, the corresponding values were 63.1%, 89.4%, 87.1%, 73.5%, and 78.8%, respectively. The sensitivity of original digital radiograph for detecting proximal dentinal caries was significantly higher than that of reverse contrast mode (p<0.05). However, no statistically significant differences were found regarding specificity, positive predictive value, negative predictive value, or accuracy (p>0.05). Conclusion The sensitivity of the original digital radiograph for detecting proximal dentinal caries was significantly higher than that of the reversed contrast images. However, no statistically significant differences were found between these techniques regarding specificity, positive predictive value, negative predictive value, or accuracy. PMID:26389055

The Teacher Observation Form: Revisions and Updates

ERIC Educational Resources Information Center

Peters, Scott J.; Gates, Jillian C.

2010-01-01

This article discusses the original development and subsequent updates and revisions made to the Teacher Observation Form (TOF). The TOF is a 12-item form to be used by evaluators in the observation of teachers of gifted and talented students. After nearly 25 years of use, the original TOF was revised based on input from content experts and…

Measures of Residual Risk with Connections to Regression, Risk Tracking, Surrogate Models, and Ambiguity

DTIC Science & Technology

2015-01-07

vector that helps to manage , predict, and mitigate the risk in the original variable. Residual risk can be exemplified as a quantification of the improved... the random variable of interest is viewed in concert with a related random vector that helps to manage , predict, and mitigate the risk in the original...measures of risk. They view a random variable of interest in concert with an auxiliary random vector that helps to manage , predict and mitigate the risk

DOE Office of Scientific and Technical Information (OSTI.GOV)

Xantheas, Sotiris S.; Werhahn, Jasper C.

Based on the formulation of the analytical expression of the potential V(r) describing intermolecular interactions in terms of the dimensionless variables r*=r/rm and !*=V/!, where rm is the separation at the minimum and ! the well depth, we propose more generalized scalable forms for the commonly used Lennard-Jones, Mie, Morse and Buckingham exponential-6 potential energy functions (PEFs). These new generalized forms have an additional parameter from and revert to the original ones for some choice of that parameter. In this respect, the original forms can be considered as special cases of the more general forms that are introduced. We alsomore » propose a scalable, but nonrevertible to the original one, 4-parameter extended Morse potential.« less

Entropic effects, shape, and size of mixed micelles formed by copolymers with complex architectures

NASA Astrophysics Data System (ADS)

Kalogirou, Andreas; Gergidis, Leonidas N.; Moultos, Othonas; Vlahos, Costas

2015-11-01

The entropic effects in the comicellization behavior of amphiphilic A B copolymers differing in the chain size of solvophilic A parts were studied by means of molecular dynamics simulations. In particular, mixtures of miktoarm star copolymers differing in the molecular weight of solvophilic arms were investigated. We found that the critical micelle concentration values show a positive deviation from the analytical predictions of the molecular theory of comicellization for chemically identical copolymers. This can be attributed to the effective interactions between copolymers originated from the arm size asymmetry. The effective interactions induce a very small decrease in the aggregation number of preferential micelles triggering the nonrandom mixing between the solvophilic moieties in the corona. Additionally, in order to specify how the chain architecture affects the size distribution and the shape of mixed micelles we studied star-shaped, H-shaped, and homo-linked-rings-linear mixtures. In the first case the individual constituents form micelles with preferential and wide aggregation numbers and in the latter case the individual constituents form wormlike and spherical micelles.

Entropic effects, shape, and size of mixed micelles formed by copolymers with complex architectures.

PubMed

Kalogirou, Andreas; Gergidis, Leonidas N; Moultos, Othonas; Vlahos, Costas

2015-11-01

The entropic effects in the comicellization behavior of amphiphilic AB copolymers differing in the chain size of solvophilic A parts were studied by means of molecular dynamics simulations. In particular, mixtures of miktoarm star copolymers differing in the molecular weight of solvophilic arms were investigated. We found that the critical micelle concentration values show a positive deviation from the analytical predictions of the molecular theory of comicellization for chemically identical copolymers. This can be attributed to the effective interactions between copolymers originated from the arm size asymmetry. The effective interactions induce a very small decrease in the aggregation number of preferential micelles triggering the nonrandom mixing between the solvophilic moieties in the corona. Additionally, in order to specify how the chain architecture affects the size distribution and the shape of mixed micelles we studied star-shaped, H-shaped, and homo-linked-rings-linear mixtures. In the first case the individual constituents form micelles with preferential and wide aggregation numbers and in the latter case the individual constituents form wormlike and spherical micelles.

Mommy, Where Do Climate Service Products Come From?

NASA Astrophysics Data System (ADS)

Redmond, K. T.

2015-12-01

Since the middle 20th Century -- and earlier-- a large variety of climate services have become available to existing and potential users needing climate information to inform a decision of interest to them. Climate may play a minor to major role in such decisions. Originally, most such information was delivered in the form of products, which could range in complexity from the simplest possible form, the original or edited data themselves, to more highly developed and manipulated information in the form of summaries, typically in fixed forms. These were intended to serve a need for widely, routinely, and frequently requested basic statistical information about climate, in the form of tables, graphics and sometimes narratives. With the rise of the internet this approach has given way to applications that can generate tailored summaries on demand, with the user able to control date intervals, statistical thresholds, formats, and a variety of other issues of both substance and style. A much richer environment for the creation of such information now exists. This tradition arose largely through the combined efforts of NOAA and predecessor agencies via the National Weather Records Center, renamed the National Climate Center, renamed the National Climatic Data Center, now combined with geophysical and oceanographic counterparts into the National Centers for Environmental Information, in analogy with the National Centers for Environmental Prediction. A steady partner during this history has been the membership of the American Association of State Climatologists. The first efforts were intended to address to most common questions and to assist with reduction in workload in answering multiple repeated requests for the same information. Over time users and uses have become increasingly sophisticated, specialized, and diverse. Increasing efforts are directed to a more systematic approach, involving explicit engagement of stakeholders, to learn which applications to develop or improve. The recent merger of three centers into NCEI presents opportunities in this realm.

The origin of inner Solar System water

NASA Astrophysics Data System (ADS)

Alexander, Conel M. O'D.

2017-04-01

Of the potential volatile sources for the terrestrial planets, the CI and CM carbonaceous chondrites are closest to the planets' bulk H and N isotopic compositions. For the Earth, the addition of approximately 2-4 wt% of CI/CM material to a volatile-depleted proto-Earth can explain the abundances of many of the most volatile elements, although some solar-like material is also required. Two dynamical models of terrestrial planet formation predict that the carbonaceous chondrites formed either in the asteroid belt (`classical' model) or in the outer Solar System (5-15 AU in the Grand Tack model). To test these models, at present the H isotopes of water are the most promising indicators of formation location because they should have become increasingly D-rich with distance from the Sun. The estimated initial H isotopic compositions of water accreted by the CI, CM, CR and Tagish Lake carbonaceous chondrites were much more D-poor than measured outer Solar System objects. A similar pattern is seen for N isotopes. The D-poor compositions reflect incomplete re-equilibration with H2 in the inner Solar System, which is also consistent with the O isotopes of chondritic water. On balance, it seems that the carbonaceous chondrites and their water did not form very far out in the disc, almost certainly not beyond the orbit of Saturn when its moons formed (approx. 3-7 AU in the Grand Tack model) and possibly close to where they are found today. This article is part of the themed issue 'The origin, history and role of water in the evolution of the inner Solar System'.

Male Violence and Sexual Intimidation in a Wild Primate Society.

PubMed

Baniel, Alice; Cowlishaw, Guy; Huchard, Elise

2017-07-24

Sexual violence occurring in the context of long-term heterosexual relationships, such as sexual intimidation, is widespread across human populations [1-3]. However, its evolutionary origins remain speculative because few studies have investigated the existence of comparable forms of sexual coercion in animals [4, 5], in which repeated male aggression toward a female provides the aggressor with delayed mating benefits [6]. Here, we test whether male aggression toward females functions as sexual coercion in wild chacma baboons (Papio ursinus). We found support for all three main predictions of the sexual coercion hypothesis [7]: male aggression (1) is greatest against cycling females, (2) is costly and represents the main source of injuries for cycling females, and (3) increases male mating success with their victims in the future. Detailed analysis of chronological sequences between aggression and matings ruled out other coercive mechanisms, such as short-term harassment and punishment, by showing that aggression and matings are temporally decoupled. This decoupling may explain why some forms of sexual violence have been largely overlooked in well-studied animal populations despite their likely impact on the fitness of both sexes. Finally, we found no support for alternative hypotheses such as a female preference for aggressive males [8, 9]. This new, detailed study of the forms and intensity of sexual intimidation in a wild primate suggests that it may be widespread across mammalian societies, with important implications for understanding the evolution of mate choice and sexual conflict in mammals, as well as the origins of human sexual violence. Copyright © 2017 Elsevier Ltd. All rights reserved.

Uncertainty Estimation using Bootstrapped Kriging Predictions for Precipitation Isoscapes

NASA Astrophysics Data System (ADS)

Ma, C.; Bowen, G. J.; Vander Zanden, H.; Wunder, M.

2017-12-01

Isoscapes are spatial models representing the distribution of stable isotope values across landscapes. Isoscapes of hydrogen and oxygen in precipitation are now widely used in a diversity of fields, including geology, biology, hydrology, and atmospheric science. To generate isoscapes, geostatistical methods are typically applied to extend predictions from limited data measurements. Kriging is a popular method in isoscape modeling, but quantifying the uncertainty associated with the resulting isoscapes is challenging. Applications that use precipitation isoscapes to determine sample origin require estimation of uncertainty. Here we present a simple bootstrap method (SBM) to estimate the mean and uncertainty of the krigged isoscape and compare these results with a generalized bootstrap method (GBM) applied in previous studies. We used hydrogen isotopic data from IsoMAP to explore these two approaches for estimating uncertainty. We conducted 10 simulations for each bootstrap method and found that SBM results in more kriging predictions (9/10) compared to GBM (4/10). Prediction from SBM was closer to the original prediction generated without bootstrapping and had less variance than GBM. SBM was tested on different datasets from IsoMAP with different numbers of observation sites. We determined that predictions from the datasets with fewer than 40 observation sites using SBM were more variable than the original prediction. The approaches we used for estimating uncertainty will be compiled in an R package that is under development. We expect that these robust estimates of precipitation isoscape uncertainty can be applied in diagnosing the origin of samples ranging from various type of waters to migratory animals, food products, and humans.

Multifluid magnetohydrodynamics of weakly ionized plasmas

NASA Astrophysics Data System (ADS)

Menzel, Raymond

The process of star formation is an integral part of the new field of astrobiology, which studies the origins of life. Since the gas that collapses to form stars and their resulting protoplanetary disks is known to be weakly ionized and contain magnetic fields, star formation is governed by multifluid magnetohydrodynamics. In this thesis we consider two important problems involved in the process of star formation that may have strongly affected the origins of life, with the goal of determining the thermal effects of these flows and modeling the physical conditions of these environments. We first considered the outstanding problem of how primitive bodies, specifically asteroids, were heated in protoplanetary disks early in their lifetime. Reexamining asteroid heating due to the classic unipolar induction heating mechanism described by Sonett et al. (1970), we find that this mechanism contains a subtle conceptual error. As original conceived, heating due to this mechanism is driven by a uniform, supersonic, fully-ionized, magnetized, T Tauri solar wind, which sweeps past an asteroid and causes the asteroid to experience a motional electric field in its rest frame. We point out that this mechanism ignores the interaction between the body surface and the flow, and thus only correctly describes the electric field far away from the asteroid where the plasma streams freely. In a realistic protoplanetary disk environment, we show that the interaction due to friction between the asteroid surface and the flow causes a shear layer to form close to the body, wherein the motional electric field predicted by Sonett et al. decreases and tends to zero at the asteroid surface. We correct this error by using the equations of multifluid magnetohydrodynamics to explicitly treat the shear layer. We calculate the velocity field in the plasma, and the magnetic and electric fields everywhere for two flows over an idealized infinite asteroid with varying magnetic field orientations. We show that the total electric field in the asteroid may either be of comparable strength to the electric field predicted by Sonett et al. or vanish depending on the magnetic field geometry. We include the effects of dust grains in the gas and calculate the heating rates in the plasma flow due to ion-neutral scattering and viscous dissipation. We term this newly discovered heating mechanism "electrodynamic heating", use measurements of asteroid electrical conductivities to estimate the upper limits of the possible heating rates and amount of thermal energy that can be deposited in the solid body, and compare these to the heating produced by the decay of radioactive nuclei like Al26. For the second problem we modeled molecular line emission from time-dependent multifluid MHD shock waves in star-forming regions. By incorporating realistic radiative cooling by CO and H2 into the numerical method developed by Ciolek & Roberge (2013), we present the only current models of truly time-dependent multifluid MHD shock waves in weakly-ionized plasmas. Using the physical conditions determined by our models, we present predictions of molecular emission in the form of excitation diagrams, which can be compared to observations of protostellar outflows in order to trace the physical conditions of these environments. Current work focuses on creating models for varying initial conditions and shock ages, which are and will be the subject of several in progress studies of observed molecular outflows and will provide further insight into the physics and chemistry of these flows.

Modified Maturity Offset Prediction Equations: Validation in Independent Longitudinal Samples of Boys and Girls.

PubMed

Kozieł, Sławomir M; Malina, Robert M

2018-01-01

Predicted maturity offset and age at peak height velocity are increasingly used with youth athletes, although validation studies of the equations indicated major limitations. The equations have since been modified and simplified. The objective of this study was to validate the new maturity offset prediction equations in independent longitudinal samples of boys and girls. Two new equations for boys with chronological age and sitting height and chronological age and stature as predictors, and one equation for girls with chronological age and stature as predictors were evaluated in serial data from the Wrocław Growth Study, 193 boys (aged 8-18 years) and 198 girls (aged 8-16 years). Observed age at peak height velocity for each youth was estimated with the Preece-Baines Model 1. The original prediction equations were included for comparison. Predicted age at peak height velocity was the difference between chronological age at prediction and maturity offset. Predicted ages at peak height velocity with the new equations approximated observed ages at peak height velocity in average maturing boys near the time of peak height velocity; a corresponding window for average maturing girls was not apparent. Compared with observed age at peak height velocity, predicted ages at peak height velocity with the new and original equations were consistently later in early maturing youth and earlier in late maturing youth of both sexes. Predicted ages at peak height velocity with the new equations had reduced variation compared with the original equations and especially observed ages at peak height velocity. Intra-individual variation in predicted ages at peak height velocity with all equations was considerable. The new equations are useful for average maturing boys close to the time of peak height velocity; there does not appear to be a clear window for average maturing girls. The new and original equations have major limitations with early and late maturing boys and girls.

Quasiperiodic moiré plasmonic crystals.

PubMed

Lubin, Steven M; Hryn, Alexander J; Huntington, Mark D; Engel, Clifford J; Odom, Teri W

2013-12-23

This paper describes the properties of silver plasmonic crystals with quasiperiodic rotational symmetries. Compared to periodic plasmonic crystals, quasiperiodic moiré structures exhibited an increased number of surface plasmon polariton modes, especially at high angles of excitation. In addition, plasmonic band gaps were often formed at the intersections of these new modes. To identify the origin and predict the location of the band gaps, we developed a Bragg-based indexing system using the reciprocal lattice vectors of the moiré plasmonic crystals. We showed that even more complicated quasiperiodic geometries could also be described by this indexing model. We anticipate that these quasiperiodic lattices will be useful for applications that require the concentration and manipulation of light over a broadband spectrum.

Multi-model approach to characterize human handwriting motion.

PubMed

Chihi, I; Abdelkrim, A; Benrejeb, M

2016-02-01

This paper deals with characterization and modelling of human handwriting motion from two forearm muscle activity signals, called electromyography signals (EMG). In this work, an experimental approach was used to record the coordinates of a pen tip moving on the (x, y) plane and EMG signals during the handwriting act. The main purpose is to design a new mathematical model which characterizes this biological process. Based on a multi-model approach, this system was originally developed to generate letters and geometric forms written by different writers. A Recursive Least Squares algorithm is used to estimate the parameters of each sub-model of the multi-model basis. Simulations show good agreement between predicted results and the recorded data.

Lateral-drag propulsion forces induced by anisotropy.

PubMed

Nefedov, Igor S; Rubi, J Miguel

2017-07-21

We predict the existence of lateral drag forces near the flat surface of an absorbing slab made of an anisotropic material. The forces originate from the fluctuations of the electromagnetic field, when the anisotropy axis of the material forms a certain angle with the surface. In this situation, the spatial spectra of the fluctuating electromagnetic fields becomes asymmetric, different for positive and negative transverse wave vectors components. Differently from the case of van der Waals interactions in which the forward-backward symmetry is broken due to the particle movement, in our case the lateral motion results merely from the anisotropy of the slab. This new effect, of particular significance in hyperbolic materials, could be used for the manipulation of nanoparticles.

Highly efficient induction of chirality in intramolecular

PubMed

Cossio; Arrieta; Lecea; Alajarin; Vidal; Tovar

2000-06-16

Highly stereocontrolled, intramolecular [2 + 2] cycloadditions between ketenimines and imines leading to 1,2-dihydroazeto[2, 1-b]quinazolines have been achieved. The source of stereocontrol is a chiral carbon atom adjacent either to the iminic carbon or nitrogen atom. In the first case, the stereocontrol stems from the preference for the axial conformer in the first transition structure. In the second case, the origin of the stereocontrol lies on the two-electron stabilizing interaction between the C-C bond being formed and the sigma orbital corresponding to the polar C-X bond, X being an electronegative atom. These models can be extended to other related systems for predicting the stereochemical outcome in this intramolecular reaction.

Using Models for How Energetic Electrons Heat the Atmosphere During Flares

NASA Technical Reports Server (NTRS)

Allred, Joel

2011-01-01

Using models for how energetic electrons heat the atmosphere during flares, we simulate the radiative-hydrodynamic response of the lower solar atmosphere to flare heating. The simulations account for much of the non-LTE, optically thick radiative transfer that occurs in the chromosphere. Our models predict an increase in white light continuum during the flare on the order of 20%, but this is highly sensitive to the electron beam flux used in the simulation. We find that a majority of the white light continuum originates in the chromosphere as a result of Balmer and Paschen recombinations, but a significant portion also forms in the photosphere which has been heated by radiative backwarming.

Voyager and the origin of the solar system

NASA Technical Reports Server (NTRS)

Prentice, A. J. R.

1981-01-01

A unified model for the formation of regular satellite systems and the planetary system is outlined. The basis for this modern Laplacian theory is that there existed a large supersonic turbulent stress arising from overshooting convective motions within the three primitive gaseous clouds which formed Jupiter, Saturn, and the Sun. Calculations show that if each cloud possessed the same fraction of supersonic turbulent energy, equal to about 5% of the cloud's gravitational potential energy, then the broad mass distribution and chemistry of all regular satellite and planetary systems can be simultaneously accounted for. Titan is probably a captured moon of Saturn. Several predictions about observations made by Voyager 2 at Saturn are presented.

Interstellar molecules - Origin by catalytic reactions on grain surfaces. [compound distribution analysis

NASA Technical Reports Server (NTRS)

Anders, E.; Hayatsu, R.; Studier, M. H.

1974-01-01

To determine the compound distribution formed by surface catalysis, mixtures of CO, D2, and ND2 were heated with nickel-iron or montmorillonite clay catalysts for 49-214 hours at 250 to 300 C. Compounds identified include most of the known polyatomic interstellar molecules, as well as homologous series of acetylenes, dienes, alcohols, aldehydes, ketones, ethers, esters, nitriles, amines, etc., and cyclic compounds such as furans and pyrroles. These homologous series are uniquely characteristic of surface catalysis. A search for the heavier members of these series, predicted to occur at 1/10th to 1/1,000th the abundance of the lightest members, thus comprises a crucial test of this mechanism.

Comparisons of Predictions of the XB-70-1 Longitudinal Stability and Control Derivatives with Flight Results for Six Flight Conditions

NASA Technical Reports Server (NTRS)

Wolowicz, C. H.; Yancey, R. B.

1973-01-01

Preliminary correlations of flight-determined and predicted stability and control characteristics of the XB-70-1 reported in NASA TN D-4578 were subject to uncertainties in several areas which necessitated a review of prediction techniques particularly for the longitudinal characteristics. Reevaluation and updating of the original predictions, including aeroelastic corrections, for six specific flight-test conditions resulted in improved correlations of static pitch stability with flight data. The original predictions for the pitch-damping derivative, on the other hand, showed better correlation with flight data than the updated predictions. It appears that additional study is required in the application of aeroelastic corrections to rigid model wind-tunnel data and the theoretical determination of dynamic derivatives for this class of aircraft.

The Origin of American Black English: Be-Forms in the HOODOO Texts.

ERIC Educational Resources Information Center

Ewers, Traute

The study examines origins of the usage patterns of "be" forms (conjugated and invariant forms of the copula) in Black English as they developed over a period of about 30 years. The corpus studied consists of selected interviews from a collection of recordings about Hoodoo, conjuration, witchcraft, and rootwork made by a white priest with almost…

The ties that bind: genetic relatedness predicts the fission and fusion of social groups in wild African elephants.

PubMed

Archie, Elizabeth A; Moss, Cynthia J; Alberts, Susan C

2006-03-07

Many social animals live in stable groups. In contrast, African savannah elephants (Loxodonta africana) live in unusually fluid, fission-fusion societies. That is, 'core' social groups are composed of predictable sets of individuals; however, over the course of hours or days, these groups may temporarily divide and reunite, or they may fuse with other social groups to form much larger social units. Here, we test the hypothesis that genetic relatedness predicts patterns of group fission and fusion among wild, female African elephants. Our study of a single Kenyan population spans 236 individuals in 45 core social groups, genotyped at 11 microsatellite and one mitochondrial DNA (mtDNA) locus. We found that genetic relatedness predicted group fission; adult females remained with their first order maternal relatives when core groups fissioned temporarily. Relatedness also predicted temporary fusion between social groups; core groups were more likely to fuse with each other when the oldest females in each group were genetic relatives. Groups that shared mtDNA haplotypes were also significantly more likely to fuse than groups that did not share mtDNA. Our results suggest that associations between core social groups persist for decades after the original maternal kin have died. We discuss these results in the context of kin selection and its possible role in the evolution of elephant sociality.

Left-right leaf asymmetry in decussate and distichous phyllotactic systems.

PubMed

Martinez, Ciera C; Chitwood, Daniel H; Smith, Richard S; Sinha, Neelima R

2016-12-19

Leaves in plants with spiral phyllotaxy exhibit directional asymmetries, such that all the leaves originating from a meristem of a particular chirality are similarly asymmetric relative to each other. Models of auxin flux capable of recapitulating spiral phyllotaxis predict handed auxin asymmetries in initiating leaf primordia with empirically verifiable effects on superficially bilaterally symmetric leaves. Here, we extend a similar analysis of leaf asymmetry to decussate and distichous phyllotaxy. We found that our simulation models of these two patterns predicted mirrored asymmetries in auxin distribution in leaf primordia pairs. To empirically verify the morphological consequences of asymmetric auxin distribution, we analysed the morphology of a tomato sister-of-pin-formed1a (sopin1a) mutant, entire-2, in which spiral phyllotaxy consistently transitions to a decussate state. Shifts in the displacement of leaflets on the left and right sides of entire-2 leaf pairs mirror each other, corroborating predicted model results. We then analyse the shape of more than 800 common ivy (Hedera helix) and more than 3000 grapevine (Vitis and Ampelopsis spp.) leaf pairs and find statistical enrichment of predicted mirrored asymmetries. Our results demonstrate that left-right auxin asymmetries in models of decussate and distichous phyllotaxy successfully predict mirrored asymmetric leaf morphologies in superficially symmetric leaves.This article is part of the themed issue 'Provocative questions in left-right asymmetry'. © 2016 The Author(s).

Discussion of New Approaches to Medium-Short-Term Earthquake Forecast in Practice of The Earthquake Prediction in Yunnan

NASA Astrophysics Data System (ADS)

Hong, F.

2017-12-01

After retrospection of years of practice of the earthquake prediction in Yunnan area, it is widely considered that the fixed-point earthquake precursory anomalies mainly reflect the field information. The increase of amplitude and number of precursory anomalies could help to determine the original time of earthquakes, however it is difficult to obtain the spatial relevance between earthquakes and precursory anomalies, thus we can hardly predict the spatial locations of earthquakes using precursory anomalies. The past practices have shown that the seismic activities are superior to the precursory anomalies in predicting earthquakes locations, resulting from the increased seismicity were observed before 80% M=6.0 earthquakes in Yunnan area. While the mobile geomagnetic anomalies are turned out to be helpful in predicting earthquakes locations in recent year, for instance, the forecasted earthquakes occurring time and area derived form the 1-year-scale geomagnetic anomalies before the M6.5 Ludian earthquake in 2014 are shorter and smaller than which derived from the seismicity enhancement region. According to the past works, the author believes that the medium-short-term earthquake forecast level, as well as objective understanding of the seismogenic mechanisms, could be substantially improved by the densely laying observation array and capturing the dynamic process of physical property changes in the enhancement region of medium to small earthquakes.

Causal beliefs about depression in different cultural groups—what do cognitive psychological theories of causal learning and reasoning predict?

PubMed Central

Hagmayer, York; Engelmann, Neele

2014-01-01

Cognitive psychological research focuses on causal learning and reasoning while cognitive anthropological and social science research tend to focus on systems of beliefs. Our aim was to explore how these two types of research can inform each other. Cognitive psychological theories (causal model theory and causal Bayes nets) were used to derive predictions for systems of causal beliefs. These predictions were then applied to lay theories of depression as a specific test case. A systematic literature review on causal beliefs about depression was conducted, including original, quantitative research. Thirty-six studies investigating 13 non-Western and 32 Western cultural groups were analyzed by classifying assumed causes and preferred forms of treatment into common categories. Relations between beliefs and treatment preferences were assessed. Substantial agreement between cultural groups was found with respect to the impact of observable causes. Stress was generally rated as most important. Less agreement resulted for hidden, especially supernatural causes. Causal beliefs were clearly related to treatment preferences in Western groups, while evidence was mostly lacking for non-Western groups. Overall predictions were supported, but there were considerable methodological limitations. Pointers to future research, which may combine studies on causal beliefs with experimental paradigms on causal reasoning, are given. PMID:25505432

Increasing Prediction the Original Final Year Project of Student Using Genetic Algorithm

NASA Astrophysics Data System (ADS)

Saragih, Rijois Iboy Erwin; Turnip, Mardi; Sitanggang, Delima; Aritonang, Mendarissan; Harianja, Eva

2018-04-01

Final year project is very important forgraduation study of a student. Unfortunately, many students are not seriouslydidtheir final projects. Many of studentsask for someone to do it for them. In this paper, an application of genetic algorithms to predict the original final year project of a studentis proposed. In the simulation, the data of the final project for the last 5 years is collected. The genetic algorithm has several operators namely population, selection, crossover, and mutation. The result suggest that genetic algorithm can do better prediction than other comparable model. Experimental results of predicting showed that 70% was more accurate than the previous researched.

Referential Choice: Predictability and Its Limits

PubMed Central

Kibrik, Andrej A.; Khudyakova, Mariya V.; Dobrov, Grigory B.; Linnik, Anastasia; Zalmanov, Dmitrij A.

2016-01-01

We report a study of referential choice in discourse production, understood as the choice between various types of referential devices, such as pronouns and full noun phrases. Our goal is to predict referential choice, and to explore to what extent such prediction is possible. Our approach to referential choice includes a cognitively informed theoretical component, corpus analysis, machine learning methods and experimentation with human participants. Machine learning algorithms make use of 25 factors, including referent’s properties (such as animacy and protagonism), the distance between a referential expression and its antecedent, the antecedent’s syntactic role, and so on. Having found the predictions of our algorithm to coincide with the original almost 90% of the time, we hypothesized that fully accurate prediction is not possible because, in many situations, more than one referential option is available. This hypothesis was supported by an experimental study, in which participants answered questions about either the original text in the corpus, or about a text modified in accordance with the algorithm’s prediction. Proportions of correct answers to these questions, as well as participants’ rating of the questions’ difficulty, suggested that divergences between the algorithm’s prediction and the original referential device in the corpus occur overwhelmingly in situations where the referential choice is not categorical. PMID:27721800

Use of bio-informatics assessment schema (BIAS) to improve diagnosis and prognosis of myocardial perfusion data: results from the NHLBI-sponsored women's ischemia syndrome evaluation (WISE).

PubMed

Doyle, Mark; Pohost, Gerald M; Bairey Merz, C Noel; Shaw, Leslee J; Sopko, George; Rogers, William J; Sharaf, Barry L; Pepine, Carl J; Thompson, Diane V; Rayarao, Geetha; Tauxe, Lindsey; Kelsey, Sheryl F; Biederman, Robert W W

2016-10-01

We introduce an algorithmic approach to optimize diagnostic and prognostic value of gated cardiac single photon emission computed tomography (SPECT) and magnetic resonance (MR) myocardial perfusion imaging (MPI) modalities in women with suspected myocardial ischemia. The novel approach: bio-informatics assessment schema (BIAS) forms a mathematical model utilizing MPI data and cardiac metrics generated by one modality to predict the MPI status of another modality. The model identifies cardiac features that either enhance or mask the image-based evidence of ischemia. For each patient, the BIAS model value is used to set an appropriate threshold for the detection of ischemia. Women (n=130), with symptoms and signs of suspected myocardial ischemia, underwent MPI assessment for regional perfusion defects using two different modalities: gated SPECT and MR. To determine perfusion status, MR data were evaluated qualitatively (MRI QL ) and semi-quantitatively (MRI SQ ) while SPECT data were evaluated using conventional clinical criteria. Evaluators were masked to results of the alternate modality. These MPI status readings were designated "original". Two regression models designated "BIAS" models were generated to model MPI status obtained with one modality (e.g., MRI) compared with a second modality (e.g., SPECT), but importantly, the BIAS models did not include the primary Original MPI reading of the predicting modality. Instead, the BIAS models included auxiliary measurements like left ventricular chamber volumes and myocardial wall thickness. For each modality, the BIAS model was used to set a progressive threshold for interpretation of MPI status. Women were then followed for 38±14 months for the development of a first major adverse cardiovascular event [MACE: CV death, nonfatal myocardial infarction (MI) or hospitalization for heart failure]. Original and BIAS-augmented perfusion status were compared in their ability to detect coronary artery disease (CAD) and for prediction of MACE. Adverse events occurred in 14 (11%) women and CAD was present in 13 (10%). There was a positive correlation of maximum coronary artery stenosis and BIAS score for MRI and SPECT (P<0.001). Receiver operator characteristic (ROC) analysis was conducted and showed an increase in the area under the curve of the BIAS-augmented MPI interpretation of MACE vs . the original for MRI SQ (0.78 vs . 0.54), MRI QL (0.78 vs . 0.64), SPECT (0.82 vs . 0.63) and the average of the three readings (0.80±0.02 vs . 0.60±0.05, P<0.05). Increasing values of the BIAS score generated by both MRI and SPECT corresponded to the increasing prevalence of CAD and MACE. The BIAS-augmented detection of ischemia better predicted MACE compared with the Original reading for the MPI data for both MRI and SPECT.

Development and Tissue Origins of the Mammalian Cranial Base

PubMed Central

Iseki, S.; Bamforth, S. D.; Olsen, B. R.; Morriss-Kay, G. M.

2008-01-01

The vertebrate cranial base is a complex structure composed of bone, cartilage and other connective tissues underlying the brain; it is intimately connected with development of the face and cranial vault. Despite its central importance in craniofacial development, morphogenesis and tissue origins of the cranial base have not been studied in detail in the mouse, an important model organism. We describe here the location and time of appearance of the cartilages of the chondrocranium. We also examine the tissue origins of the mouse cranial base using a neural crest cell lineage cell marker, Wnt1-Cre/R26R, and a mesoderm lineage cell marker, Mesp1-Cre/R26R. The chondrocranium develops between E11 and E16 in the mouse, beginning with development of the caudal (occipital) chondrocranium, followed by chondrogenesis rostrally to form the nasal capsule, and finally fusion of these two parts via the midline central stem and the lateral struts of the vault cartilages. X-Gal staining of transgenic mice from E8.0 to 10 days post-natal showed that neural crest cells contribute to all of the cartilages that form the ethmoid, presphenoid, and basisphenoid bones with the exception of the hypochiasmatic cartilages. The basioccipital bone and non-squamous parts of the temporal bones are mesoderm derived. Therefore the prechordal head is mostly composed of neural crest-derived tissues, as predicted by the New Head Hypothesis. However, the anterior location of the mesoderm-derived hypochiasmatic cartilages, which are closely linked with the extra-ocular muscles, suggests that some tissues associated with the visual apparatus may have evolved independently of the rest of the “New Head”. PMID:18680740

The limits of extremophilic life expanded under extraterrestrial environment-simulated experiments

NASA Astrophysics Data System (ADS)

Lage, C.; Dalmaso, G.; Teixeira, L.; Bendia, A.; Rosado, A.

2012-09-01

Astrobiology is a brand new area of science that seeks to understand the origin and dynamics of life in the universe. Several hypotheses to explain life in the cosmic context have been developed throughout human history, but only now technology has allowed many of them to be tested. Laboratory experiments have been able to show how chemical elements essential to life, carbon, nitrogen, oxygen and hydrogen combine in biologically important compounds. Interestingly, these compounds are found universally. As these compounds were combined to the point of originating cells and complex organisms is still a challenge to be unveiled by science. However, our 4.5 billion years-old solar system was born within a 10-billion years-old universe. Thus, simple cells like microorganisms may have had time to form in planets older than ours or other suitable molecular places in the universe. One hypothesis to explain the origin of life on Earth is called panspermia, which predicts that microbial life could have been formed in the universe billions of years ago, traveling between planets, and inseminating units of life that could have become more complex in habitable planets like ours. A project designed to test the viability of extremophile microorganisms exposed to simulated extraterrestrial environments is ongoing at the Carlos Chagas Filho Institute of Biophysics to test whether microbial life could withstand those inhospitable environments. Ultra-resistant (known or novel ones) microorganisms collected from terrestrial extreme environments, extremophiles, have been exposed to intense radiation sources simulating solar radiation (at synchrotron accelerators), capable of emitting in a few hours radiation equivalent of million years accumulated doses. The results obtained in these experiments reveal the interesting possibility of the existence of microbial life beyond Earth.

Unveiling the spatial structure of the overionized plasma in the supernova remnant W49B

NASA Astrophysics Data System (ADS)

Zhou, Xin; Miceli, Marco; Bocchino, Fabrizio; Orlando, Salvatore; Chen, Yang

2011-07-01

W49B is a mixed-morphology supernova remnant with thermal X-ray emission dominated by the ejecta. In this remnant, the presence of overionized plasma has been directly established, with information about its spatial structure. However, the physical origin of the overionized plasma in W49B has not yet been understood. We investigate this intriguing issue through a 2D hydrodynamic model that takes into account, for the first time, the mixing of ejecta with the inhomogeneous circumstellar and interstellar medium, the thermal conduction, the radiative losses from optically thin plasma and the deviations from equilibrium of ionization induced by plasma dynamics. The model was set up on the basis of the observational results. We found that the thermal conduction plays an important role in the evolution of W49B, inducing the evaporation of the circumstellar ring-like cloud (whose presence has been deduced from previous observations) that mingles with the surrounding hot medium, cooling down the shocked plasma, and pushes the ejecta backwards to the centre of the remnant, forming there a jet-like structure. During the evolution, a large region of overionized plasma forms within the remnant. The overionized plasma originates from the rapid cooling of the hot plasma originally heated by the shock reflected from the dense ring-like cloud. In particular, we found two different ways for the rapid cooling of plasma to appear: (i) the mixing of relatively cold and dense material evaporated from the ring with the hot shocked plasma and (ii) the rapid adiabatic expansion of the ejecta. The spatial distribution of the radiative recombination continuum predicted by the numerical model is in good agreement with that observed.

The breastfeeding self-efficacy scale: psychometric assessment of the short form.

PubMed

Dennis, Cindy-Lee

2003-01-01

The purpose of this study was to reduce the number of items on the original Breastfeeding Self-Efficacy Scale (BSES) and psychometrically assess the revised BSES-Short Form (BSES-SF). As part of a longitudinal study, participants completed mailed questionnaires at 1, 4, and 8 weeks postpartum. Health region in British Columbia. A population-based sample of 491 breastfeeding mothers. BSES, Edinburgh Postnatal Depression Scale, Rosenberg Self-Esteem Scale, and Perceived Stress Scale. Internal consistency statistics with the original BSES suggested item redundancy. As such, 18 items were deleted, using explicit reduction criteria. Based on the encouraging reliability analysis of the new 14-item BSES-SF, construct validity was assessed using principal components factor analysis, comparison of contrasted groups, and correlations with measures of similar constructs. Support for predictive validity was demonstrated through significant mean differences between breastfeeding and bottle feeding mothers at 4 (p < .001) and 8 (p < .001) weeks postpartum. Demographic response patterns suggested the BSES-SF is a unique tool to identify mothers at risk of prematurely discontinuing breastfeeding. These psychometric results indicate the BSES-SF is an excellent measure of breastfeeding self-efficacy and considered ready for clinical use to (a) identify breastfeeding mothers at high risk, (b) assess breastfeeding behaviors and cognitions to individualize confidence-building strategies, and (c) evaluate the effectiveness of various interventions and guide program development.

NUMERICAL SIMULATIONS OF THE POSSIBLE ORIGIN OF THE TWO SUB-PARSEC SCALE AND COUNTERROTATING STELLAR DISKS AROUND SgrA*

DOE Office of Scientific and Technical Information (OSTI.GOV)

Alig, C.; Schartmann, M.; Burkert, A.

2013-07-10

We present a high-resolution simulation of an idealized model to explain the origin of the two young, counterrotating, sub-parsec scale stellar disks around the supermassive black hole SgrA* at the center of the Milky Way. In our model, the collision of a single molecular cloud with a circumnuclear gas disk (similar to the one observed presently) leads to multiple streams of gas flowing toward the black hole and creating accretion disks with angular momentum depending on the ratio of cloud and circumnuclear disk material. The infalling gas creates two inclined, counterrotating sub-parsec scale accretion disks around the supermassive black holemore » with the first disk forming roughly 1 Myr earlier, allowing it to fragment into stars and get dispersed before the second counterrotating disk forms. Fragmentation of the second disk would lead to the two inclined, counterrotating stellar disks which are observed at the Galactic center. A similar event might be happening again right now at the Milky Way Galactic center. Our model predicts that the collision event generates spiral-like filaments of gas, feeding the Galactic center prior to disk formation with a geometry and inflow pattern that is in agreement with the structure of the so-called mini spiral that has been detected in the Galactic center.« less

Planetary Transmission Diagnostics

NASA Technical Reports Server (NTRS)

Lewicki, David G. (Technical Monitor); Samuel, Paul D.; Conroy, Joseph K.; Pines, Darryll J.

2004-01-01

This report presents a methodology for detecting and diagnosing gear faults in the planetary stage of a helicopter transmission. This diagnostic technique is based on the constrained adaptive lifting algorithm. The lifting scheme, developed by Wim Sweldens of Bell Labs, is a time domain, prediction-error realization of the wavelet transform that allows for greater flexibility in the construction of wavelet bases. Classic lifting analyzes a given signal using wavelets derived from a single fundamental basis function. A number of researchers have proposed techniques for adding adaptivity to the lifting scheme, allowing the transform to choose from a set of fundamental bases the basis that best fits the signal. This characteristic is desirable for gear diagnostics as it allows the technique to tailor itself to a specific transmission by selecting a set of wavelets that best represent vibration signals obtained while the gearbox is operating under healthy-state conditions. However, constraints on certain basis characteristics are necessary to enhance the detection of local wave-form changes caused by certain types of gear damage. The proposed methodology analyzes individual tooth-mesh waveforms from a healthy-state gearbox vibration signal that was generated using the vibration separation (synchronous signal-averaging) algorithm. Each waveform is separated into analysis domains using zeros of its slope and curvature. The bases selected in each analysis domain are chosen to minimize the prediction error, and constrained to have the same-sign local slope and curvature as the original signal. The resulting set of bases is used to analyze future-state vibration signals and the lifting prediction error is inspected. The constraints allow the transform to effectively adapt to global amplitude changes, yielding small prediction errors. However, local wave-form changes associated with certain types of gear damage are poorly adapted, causing a significant change in the prediction error. The constrained adaptive lifting diagnostic algorithm is validated using data collected from the University of Maryland Transmission Test Rig and the results are discussed.

Potential energy surface and vibrational band origins of the triatomic lithium cation

NASA Astrophysics Data System (ADS)

Searles, Debra J.; Dunne, Simon J.; von Nagy-Felsobuki, Ellak I.

The 104 point CISD Li +3 potential energy surface and its analytical representation is reported. The calculations predict the minimum energy geometry to be an equilateral triangle of side RLiLi = 3.0 Å and of energy - 22.20506 E h. A fifth-order Morse—Dunham type analytical force field is used in the Carney—Porter normal co-ordinate vibrational Hamiltonian, the corresponding eigenvalue problem being solved variationally using a 560 configurational finite-element basis set. The predicted assignment of the vibrational band origins is in accord with that reported for H +3. Moreover, for 6Li +3 and 7Li +3 the lowest i.r. accessible band origin is the overlineν0,1,±1 predicted to be at 243.6 and 226.0 cm -1 respectively.

Evolutionary origins of hepatitis A virus in small mammals.

PubMed

Drexler, Jan Felix; Corman, Victor M; Lukashev, Alexander N; van den Brand, Judith M A; Gmyl, Anatoly P; Brünink, Sebastian; Rasche, Andrea; Seggewiβ, Nicole; Feng, Hui; Leijten, Lonneke M; Vallo, Peter; Kuiken, Thijs; Dotzauer, Andreas; Ulrich, Rainer G; Lemon, Stanley M; Drosten, Christian

2015-12-08

Hepatitis A virus (HAV) is an ancient and ubiquitous human pathogen recovered previously only from primates. The sole species of the genus Hepatovirus, existing in both enveloped and nonenveloped forms, and with a capsid structure intermediate between that of insect viruses and mammalian picornaviruses, HAV is enigmatic in its origins. We conducted a targeted search for hepatoviruses in 15,987 specimens collected from 209 small mammal species globally and discovered highly diversified viruses in bats, rodents, hedgehogs, and shrews, which by pairwise sequence distance comprise 13 novel Hepatovirus species. Near-complete genomes from nine of these species show conservation of unique hepatovirus features, including predicted internal ribosome entry site structure, a truncated VP4 capsid protein lacking N-terminal myristoylation, a carboxyl-terminal pX extension of VP1, VP2 late domains involved in membrane envelopment, and a cis-acting replication element within the 3D(pol) sequence. Antibodies in some bat sera immunoprecipitated and neutralized human HAV, suggesting conservation of critical antigenic determinants. Limited phylogenetic cosegregation among hepatoviruses and their hosts and recombination patterns are indicative of major hepatovirus host shifts in the past. Ancestral state reconstructions suggest a Hepatovirus origin in small insectivorous mammals and a rodent origin of human HAV. Patterns of infection in small mammals mimicked those of human HAV in hepatotropism, fecal shedding, acute nature, and extinction of the virus in a closed host population. The evolutionary conservation of hepatovirus structure and pathogenesis provide novel insight into the origins of HAV and highlight the utility of analyzing animal reservoirs for risk assessment of emerging viruses.

Evolutionary origins of hepatitis A virus in small mammals

PubMed Central

Drexler, Jan Felix; Corman, Victor M.; Lukashev, Alexander N.; van den Brand, Judith M. A.; Gmyl, Anatoly P.; Brünink, Sebastian; Rasche, Andrea; Seggewiβ, Nicole; Feng, Hui; Leijten, Lonneke M.; Vallo, Peter; Kuiken, Thijs; Dotzauer, Andreas; Ulrich, Rainer G.; Lemon, Stanley M.; Drosten, Christian

2015-01-01

Hepatitis A virus (HAV) is an ancient and ubiquitous human pathogen recovered previously only from primates. The sole species of the genus Hepatovirus, existing in both enveloped and nonenveloped forms, and with a capsid structure intermediate between that of insect viruses and mammalian picornaviruses, HAV is enigmatic in its origins. We conducted a targeted search for hepatoviruses in 15,987 specimens collected from 209 small mammal species globally and discovered highly diversified viruses in bats, rodents, hedgehogs, and shrews, which by pairwise sequence distance comprise 13 novel Hepatovirus species. Near-complete genomes from nine of these species show conservation of unique hepatovirus features, including predicted internal ribosome entry site structure, a truncated VP4 capsid protein lacking N-terminal myristoylation, a carboxyl-terminal pX extension of VP1, VP2 late domains involved in membrane envelopment, and a cis-acting replication element within the 3Dpol sequence. Antibodies in some bat sera immunoprecipitated and neutralized human HAV, suggesting conservation of critical antigenic determinants. Limited phylogenetic cosegregation among hepatoviruses and their hosts and recombination patterns are indicative of major hepatovirus host shifts in the past. Ancestral state reconstructions suggest a Hepatovirus origin in small insectivorous mammals and a rodent origin of human HAV. Patterns of infection in small mammals mimicked those of human HAV in hepatotropism, fecal shedding, acute nature, and extinction of the virus in a closed host population. The evolutionary conservation of hepatovirus structure and pathogenesis provide novel insight into the origins of HAV and highlight the utility of analyzing animal reservoirs for risk assessment of emerging viruses. PMID:26575627

Predictive factors of cytomegalovirus seropositivity among pregnant women in Paris, France.

PubMed

N'Diaye, Dieynaba S; Yazdanpanah, Yazdan; Krivine, Anne; Andrieu, Thibaut; Rozenberg, Flore; Picone, Olivier; Tsatsaris, Vassilis; Goffinet, François; Launay, Odile

2014-01-01

Cytomegalovirus (CMV) is the most frequent cause of congenital infection. The objective of this study was to evaluate predictive factors for CMV seronegativity in a cohort of pregnant women in Paris, France. Pregnant women enrolled in a prospective cohort during the 2009 A/H1N1 pandemic were tested for CMV IgG antibodies. Variables collected were age, geographic origin, lifestyle, work characteristics, socioeconomic status, gravidity, parity and number of children at home. A multivariate logistic regression model was used to identify independent predictive factors for CMV seropositivity. Among the 826 women enrolled, 389 (47.1%) were primiparous, and 552 (67.1%) had Metropolitan France as a geographic origin. Out of these, 355 (i.e. 57.0%, 95% confidence interval (CI): [53.6%-60.4%]) were CMV seropositive: 43.7% (95% CI:[39.5%-47.9%]) in those whose geographic origin was Metropolitan France and 84.1% in those with other origins (95% CI:[79.2%-88.3%]). Determinants associated with CMV seropositivity in a multivariate logistic regression model were: (i) geographic origin (p<0.001(compared with Metropolitan France, geographic origins of Africa adjusted odds ratio (aOR) 21.2, 95% CI:[9.7-46.5], French overseas departments and territories and other origin, aOR 7.5, 95% CI:[3.9-14.6], and Europe or Asia, aOR 2.2, 95% CI: [1.3-3.7]); and (ii) gravidity (p = 0.019), (compared with gravidity = 1, if gravidity≥3, aOR = 1.5, 95% CI: [1.1-2.2]; if gravidity = 2, aOR = 1.0, 95% CI: [0.7-1.4]). Work characteristics and socioeconomic status were not independently associated with CMV seropositivity. In this cohort of pregnant women, a geographic origin of Metropolitan France and a low gravidity were predictive factors for CMV low seropositivity. Such women are therefore the likely target population for prevention of CMV infection during pregnancy in France.

A recurrence-weighted prediction algorithm for musical analysis

NASA Astrophysics Data System (ADS)

Colucci, Renato; Leguizamon Cucunuba, Juan Sebastián; Lloyd, Simon

2018-03-01

Forecasting the future behaviour of a system using past data is an important topic. In this article we apply nonlinear time series analysis in the context of music, and present new algorithms for extending a sample of music, while maintaining characteristics similar to the original piece. By using ideas from ergodic theory, we adapt the classical prediction method of Lorenz analogues so as to take into account recurrence times, and demonstrate with examples, how the new algorithm can produce predictions with a high degree of similarity to the original sample.

Strongly coupled gauge theories: What can lattice calculations teach us?

NASA Astrophysics Data System (ADS)

Hasenfratz, A.; Brower, R. C.; Rebbi, C.; Weinberg, E.; Witzel, O.

2017-12-01

The dynamical origin of electroweak symmetry breaking is an open question with many possible theoretical explanations. Strongly coupled systems predicting the Higgs boson as a bound state of a new gauge-fermion interaction form one class of candidate models. Due to increased statistics, LHC run II will further constrain the phenomenologically viable models in the near future. In the meanwhile it is important to understand the general properties and specific features of the different competing models. In this work we discuss many-flavor gauge-fermion systems that contain both massless (light) and massive fermions. The former provide Goldstone bosons and trigger electroweak symmetry breaking, while the latter indirectly influence the infrared dynamics. Numerical results reveal that such systems can exhibit a light 0++ isosinglet scalar, well separated from the rest of the spectrum. Further, when we set the scale via the vev of electroweak symmetry breaking, we predict a 2 TeV vector resonance which could be a generic feature of SU(3) gauge theories.

What do the experts know? Calibration, precision, and the wisdom of crowds among forensic handwriting experts.

PubMed

Martire, Kristy A; Growns, Bethany; Navarro, Danielle J

2018-04-17

Forensic handwriting examiners currently testify to the origin of questioned handwriting for legal purposes. However, forensic scientists are increasingly being encouraged to assign probabilities to their observations in the form of a likelihood ratio. This study is the first to examine whether handwriting experts are able to estimate the frequency of US handwriting features more accurately than novices. The results indicate that the absolute error for experts was lower than novices, but the size of the effect is modest, and the overall error rate even for experts is large enough as to raise questions about whether their estimates can be sufficiently trustworthy for presentation in courts. When errors are separated into effects caused by miscalibration and those caused by imprecision, we find systematic differences between individuals. Finally, we consider several ways of aggregating predictions from multiple experts, suggesting that quite substantial improvements in expert predictions are possible when a suitable aggregation method is used.

Characterization and calibration of a viscoelastic simplified potential energy clock model for inorganic glasses

DOE PAGES

Chambers, Robert S.; Tandon, Rajan; Stavig, Mark E.

2015-07-07

In this study, to analyze the stresses and strains generated during the solidification of glass-forming materials, stress and volume relaxation must be predicted accurately. Although the modeling attributes required to depict physical aging in organic glassy thermosets strongly resemble the structural relaxation in inorganic glasses, the historical modeling approaches have been distinctly different. To determine whether a common constitutive framework can be applied to both classes of materials, the nonlinear viscoelastic simplified potential energy clock (SPEC) model, developed originally for glassy thermosets, was calibrated for the Schott 8061 inorganic glass and used to analyze a number of tests. A practicalmore » methodology for material characterization and model calibration is discussed, and the structural relaxation mechanism is interpreted in the context of SPEC model constitutive equations. SPEC predictions compared to inorganic glass data collected from thermal strain measurements and creep tests demonstrate the ability to achieve engineering accuracy and make the SPEC model feasible for engineering applications involving a much broader class of glassy materials.« less

Kinetic Monte Carlo and cellular particle dynamics simulations of multicellular systems

NASA Astrophysics Data System (ADS)

Flenner, Elijah; Janosi, Lorant; Barz, Bogdan; Neagu, Adrian; Forgacs, Gabor; Kosztin, Ioan

2012-03-01

Computer modeling of multicellular systems has been a valuable tool for interpreting and guiding in vitro experiments relevant to embryonic morphogenesis, tumor growth, angiogenesis and, lately, structure formation following the printing of cell aggregates as bioink particles. Here we formulate two computer simulation methods: (1) a kinetic Monte Carlo (KMC) and (2) a cellular particle dynamics (CPD) method, which are capable of describing and predicting the shape evolution in time of three-dimensional multicellular systems during their biomechanical relaxation. Our work is motivated by the need of developing quantitative methods for optimizing postprinting structure formation in bioprinting-assisted tissue engineering. The KMC and CPD model parameters are determined and calibrated by using an original computational-theoretical-experimental framework applied to the fusion of two spherical cell aggregates. The two methods are used to predict the (1) formation of a toroidal structure through fusion of spherical aggregates and (2) cell sorting within an aggregate formed by two types of cells with different adhesivities.

A review of the revised Functional Capacity Index as a predictor of 12 month outcomes following injury.

PubMed

Palmer, Cameron S; Cameron, Peter A; Gabbe, Belinda J

2017-03-01

The measurement of functional outcomes following severe trauma has been widely recognised as a priority for countries with developed trauma systems. In this respect, the Functional Capacity Index (FCI), a multi-attribute index which has been incorporated into the most recent Abbreviated Injury Scale (AIS) dictionary, is potentially attractive as it offers 12-month functional outcome predictions for patients captured by existing AIS-coded datasets. This review paper outlines the development, construction and validation of the predictive form of the FCI (termed the pFCI), the modifications made which produced the currently available 'revised' pFCI, and the extent to which the revised pFCI has been validated and used. The original pFCI performed poorly in validation studies. The revised pFCI does not address many of the identified limitations of the original version, and despite the ready availability of a truncated version in the AIS dictionary, it has only been used in a handful of studies since its introduction several years ago. Additionally, there is little evidence for its validity. It is suggested that the pFCI should be better validated, whether in the narrow population group of young, healthy individuals for which it was developed, or in the wider population of severely injured patients. Methods for accounting for the presence of multiple injures (of which two have currently been used) should also be evaluated. Many factors other than anatomical injury are known to affect functional outcomes following trauma. However, it is intuitive that any model which attempts to predict the ongoing morbidity burden in a trauma population should consider the effects of the injuries sustained. Although the revised pFCI potentially offers a low-cost assessment of likely functional limitations resulting from anatomical injury, it must be more rigorously evaluated before more comprehensive predictive tools can be developed from it. Copyright © 2017 Elsevier Ltd. All rights reserved.

The activities of eukaryotic replication origins in chromatin.

PubMed

Weinreich, Michael; Palacios DeBeer, Madeleine A; Fox, Catherine A

2004-03-15

DNA replication initiates at chromosomal positions called replication origins. This review will focus on the activity, regulation and roles of replication origins in Saccharomyces cerevisiae. All eukaryotic cells, including S. cerevisiae, depend on the initiation (activity) of hundreds of replication origins during a single cell cycle for the duplication of their genomes. However, not all origins are identical. For example, there is a temporal order to origin activation with some origins firing early during the S-phase and some origins firing later. Recent studies provide evidence that posttranslational chromatin modifications, heterochromatin-binding proteins and nucleosome positioning can control the efficiency and/or timing of chromosomal origin activity in yeast. Many more origins exist than are necessary for efficient replication. The availability of excess replication origins leaves individual origins free to evolve distinct forms of regulation and/or roles in chromosomes beyond their fundamental role in DNA synthesis. We propose that some origins have acquired roles in controlling chromatin structure and/or gene expression. These roles are not linked obligatorily to replication origin activity per se, but instead exploit multi-subunit replication proteins with the potential to form context-dependent protein-protein interactions.

A mass transfer origin for blue stragglers in NGC 188 as revealed by half-solar-mass companions.

PubMed

Geller, Aaron M; Mathieu, Robert D

2011-10-19

In open star clusters, where all members formed at about the same time, blue straggler stars are typically observed to be brighter and bluer than hydrogen-burning main-sequence stars, and therefore should already have evolved into giant stars and stellar remnants. Correlations between blue straggler frequency and cluster binary star fraction, core mass and radial position suggest that mass transfer or mergers in binary stars dominates the production of blue stragglers in open clusters. Analytic models, detailed observations and sophisticated N-body simulations, however, argue in favour of stellar collisions. Here we report that the blue stragglers in long-period binaries in the old (7 × 10(9)-year) open cluster NGC 188 have companions with masses of about half a solar mass, with a surprisingly narrow mass distribution. This conclusively rules out a collisional origin, as the collision hypothesis predicts a companion mass distribution with significantly higher masses. Mergers in hierarchical triple stars are marginally permitted by the data, but the observations do not favour this hypothesis. The data are highly consistent with a mass transfer origin for the long-period blue straggler binaries in NGC 188, in which the companions would be white dwarfs of about half a solar mass.

Acculturative stress and depression in an elderly Arabic sample.

PubMed

Wrobel, Nancy Howells; Farrag, Mohamed F; Hymes, Robert W

2009-09-01

Acculturative stress and relevant demographic variables, including immigration status, English skills, level of education, age, gender, country of origin, and years since immigration to the U. S. are examined along with their relationship to depressive symptoms. The 200 Arab-American and recent Arab immigrant participants ranged from age 60-92 and represented eight countries of origin. Most had limited fluency in English. Arabic versions of the Multi-dimensional Acculturative Stress Inventory (MASI) and Geriatric Depression Scale were administered. MASI and GDS results indicated greater degrees of acculturative stress and depression for those with a refugee or temporary resident status. More recent entry into the U.S. also predicted greater stress, while greater levels of education and English skills predicted lower levels of stress and depression. Composite stress levels and the nature of stress varied by country of origin. Although demographic variables were predictive of depression when examined separately, multiple regression analyses revealed that perceived acculturative stress, particularly pressure to learn English, provided a notable increment in prediction of depression over the demographic variables.

The Star Formation Rate Efficiency of Neutral Atomic-Dominated Hydrogen Gas in the Ooutskirts of Star-Forming Galaxies From z approx. 1 to z approx. 3

NASA Technical Reports Server (NTRS)

Rafelski, Marc; Gardner, Jonathan P.; Fumagalli, Michele; Neeleman, Marcel; Teplitz, Harry I.; Grogin, Norman; Koekemoer, Anton M.; Scarlata, Claudia

2016-01-01

Current observational evidence suggests that the star formation rate (SFR)efficiency of neutral atomic hydrogen gas measured in damped Ly(alpha) systems (DLAs) at z approx. 3 is more than 10 times lower than predicted by the Kennicutt-Schmidt (KS)relation. To understand the origin of this deficit, and to investigate possible evolution with redshift and galaxy properties, we measure the SFR efficiency of atomic gas at z approx. 1, z approx. 2, and z approx. 3 around star-forming galaxies. We use new robust photometric redshifts in the Hubble Ultra Deep Field to create galaxy stacks in these three redshift bins, and measure the SFR efficiency by combining DLA absorber statistics with the observed rest-frame UV emission in the galaxies' outskirts. We find that the SFR efficiency of H I gas at z > 1 is approx. 1%-3% of that predicted by the KS relation. Contrary to simulations and models that predict a reduced SFR efficiency with decreasing metallicity and thus with increasing redshift, we find no significant evolution in the SFR efficiency with redshift. Our analysis instead suggests that the reduced SFR efficiency is driven by the low molecular content of this atomic-dominated phase, with metallicity playing a secondary effect in regulating the conversion between atomic and molecular gas. This interpretation is supported by the similarity between the observed SFR efficiency and that observed in local atomic-dominated gas, such as in the outskirts of local spiral galaxies and local dwarf galaxies.

Nucleation and growth constraints and outcome in the natural gas hydrate system

NASA Astrophysics Data System (ADS)

Osegovic, J. P.; Max, M. D.

2016-12-01

Hydrate formation processes are functions of energy distribution constrained by physical and kinetic parameters. The generation of energy and energy derivative plots of a constrained growth crucible are used to demonstrate nucleation probability zones (phase origin(s)). Nucleation sets the stage for growth by further constraining the pathways through changes in heat capacity, heat flow coefficient, and enthalpy which in turn modify the mass and energy flow into the hydrate formation region. Nucleation events result from the accumulation of materials and energy relative to pressure, temperature, and composition. Nucleation induction is predictive (a frequency parameter) rather than directly dependent on time. Growth, as mass tranfer into a new phase, adds time as a direct parameter. Growth has direct feedback on phase transfer, energy dynamics, and mass export/import rates. Many studies have shown that hydrate growth is largely an equilibrium process controlled by either mass or energy flows. Subtle changes in the overall energy distribution shift the equilibrium in a predictable fashion. We will demonstrate the localization of hydrate nucleation in a reservoir followed by likely evolution of growth in a capped, sand filled environment. The gas hydrate stability zone (GHSZ) can be characterized as a semi-batch crystallizer in which nucleation and growth of natural gas hydrate (NGH) is a continuous process that may result in very large concentrations of NGH. Gas flux, or the relative concentration of hydrate-forming gas is the critical factor in a GHSZ. In an open groundwater system in which flow rate exceeds diffusion transport rate, dissolved natural gas is transported into and through the GHSZ. In a closed system, such as a geological trap, diffusion of hydrate-forming gas from a free gas zone below the GHSZ is the primary mechanism for movement of gas reactants. Because of the lower molecular weight of methane, where diffusion is the principal transport mechanism, the natural system can be a purification process for formation of increasingly pure NGH from a mixed gas solution over time.

15 CFR 762.4 - Original records required.

Code of Federal Regulations, 2010 CFR

2010-01-01

... 15 Commerce and Foreign Trade 2 2010-01-01 2010-01-01 false Original records required. 762.4... § 762.4 Original records required. The regulated person must maintain the original records in the form....5 of this part relating to reproduction of records. If the original record does not meet the...

Characterization of the Basic Replicon of Rhodococcus Plasmid pSOX and Development of a Rhodococcus-Escherichia coli Shuttle Vector†

PubMed Central

Denis-Larose, Claude; Bergeron, Hélène; Labbé, Diane; Greer, Charles W.; Hawari, Jalal; Grossman, Matthew J.; Sankey, Bruce M.; Lau, Peter C. K.

1998-01-01

The replication region of a 100-kb desulfurization plasmid (pSOX) from Rhodococcus sp. strain X309 was localized to a 4-kb KpnI fragment, and its sequence was determined. The amino acid sequence of one of the predicted open reading frames (ORFs) was related to the putative replication (Rep) protein sequences of the mycobacterial pLR7 family of plasmids. Three of the five predicted ORF products were identified by radiolabelling with the Escherichia coli T7 polymerase/promoter system. In E. coli, the Rep protein of pSOX was apparently synthesized in a shortened form, 21.3 kDa instead of the predicted 41.3 kDa, as a result of an internal initiation. This situation is reminescent of that for some bacterial Rep proteins. A shuttle plasmid was constructed with the pSOX origin, pBluescript II KS−, and the chloramphenicol resistance (Cmr) gene from pRF29. This new shuttle plasmid was used to demonstrate expression of the Bacillus subtilis sacB gene in a strain of Rhodococcus, rendering it sensitive to the presence of sucrose. PMID:9797291

Laser geodynamic satellite thermal/optical/vibrational analysis and testing, volume 2, book 2. [cubes and far fields

NASA Technical Reports Server (NTRS)

1975-01-01

The main tasks described involved an interferometric evaluation of several cubes, a prediction of their dihedral angles, a comparison of these predictions with independent measurements, a prediction and comparison of far field performance, recommendations as to revised dihedral angles and a subsequent analysis of cubes which were reworked to confirm the recommendations. A tolerance study and theoretical evaluation of several cubes was also performed to aid in understanding the results. The far field characteristics evaluated included polarization effects and treated both intensity distribution and encircled energy data. The energy in the 13.2 - 16.9 arc-sec annular region was tabulated as an indicator of performance sensitivity. The results are provided in viewgraph form, and show the average dihedral angle of an original set of test cubes to have been 1.8 arc-sec with an average far field annulus diameter of 18 arc-sec. Since the peak energy in the 13.2 - 16.9 arc-sec annulus was found to occur for a 1.35 arc-sec cube, and since cube tolerances were shown to increase the annulus diameter slightly, a nominal dihedral angle of 1.25 arc-sec was recommended.

Length-independent structural similarities enrich the antibody CDR canonical class model.

PubMed

Nowak, Jaroslaw; Baker, Terry; Georges, Guy; Kelm, Sebastian; Klostermann, Stefan; Shi, Jiye; Sridharan, Sudharsan; Deane, Charlotte M

2016-01-01

Complementarity-determining regions (CDRs) are antibody loops that make up the antigen binding site. Here, we show that all CDR types have structurally similar loops of different lengths. Based on these findings, we created length-independent canonical classes for the non-H3 CDRs. Our length variable structural clusters show strong sequence patterns suggesting either that they evolved from the same original structure or result from some form of convergence. We find that our length-independent method not only clusters a larger number of CDRs, but also predicts canonical class from sequence better than the standard length-dependent approach. To demonstrate the usefulness of our findings, we predicted cluster membership of CDR-L3 sequences from 3 next-generation sequencing datasets of the antibody repertoire (over 1,000,000 sequences). Using the length-independent clusters, we can structurally classify an additional 135,000 sequences, which represents a ∼20% improvement over the standard approach. This suggests that our length-independent canonical classes might be a highly prevalent feature of antibody space, and could substantially improve our ability to accurately predict the structure of novel CDRs identified by next-generation sequencing.

A Review of Ideas Concerning Life Origin

NASA Astrophysics Data System (ADS)

Gindilis, L. M.

2014-10-01

Since the times of Antiquity the and for a long time the idea of self-origination of life was the dominant one. It reappeared again after microorganisms were discovered (XVII century). The possibility of abiogenesis at microbial level was discussed for more than a century. Pateur demonstrated that spontaneous origination of microorganisms in sterile broth was due to those same microorganisms transported by dust particles. Thus proving that every form of life originates from the parental life form. So the question arises: how did the first microorganisms appear on the Earth. There are three possible versions: 1) accidental origination of a viable form; 2) primal organisms were transported to the Earth from outer space; 3) they were formed on the Earth in the process of prebiotic chemical evolution. We discuss the problems of prebiotic evolution from simple monomers up to living cells. An important item of nowadays conceptions of life origination is the hypothesis of the ancient world of RNA as possible precursor of life on Earth. The discovery in carbonaceous chondrites of traces of bacterial life evidences the existence of life in the Solar System even before the formation of the Earth. The idea of life as brought to the Earth out of Cosmos originated under the impression of self-origination hypothesis downfall. It went through several stages (Helmholtz, W. Thompson, XIX century; Arrhenius, early XX century; Hoyle and Wickramasinghe, second half of XX century) and presently evokes constantly growing interest. The panspermia theory does not solve the problem of origination of life, only moves it onto other planets. According to V.A. Mazur, the probability of accidental formation of RNA molecule is negligible not only on the Earth, but in the whole Universe over all the time span of its existence. But it is practically equal to unit in the domain formed at the inflation stage of the evolution of the Universe. A.D.Panov considered panspermia in the Galaxy at the level of prebiotic evolution products. The quantitative model he has brought forward increases life origination probability by many orders of magnitude in comparison with any isolated planet. In this model the life to originates simultaneously on all the planets with proper conditions on the same molecular basis, one and the same genetic code and the same chirality.

A Triple-Isotope Approach to Predict the Breeding Origins of European Bats

PubMed Central

Popa-Lisseanu, Ana G.; Sörgel, Karin; Luckner, Anja; Wassenaar, Leonard I.; Ibáñez, Carlos; Kramer-Schadt, Stephanie; Ciechanowski, Mateusz; Görföl, Tamás; Niermann, Ivo; Beuneux, Grégory; Mysłajek, Robert W.; Juste, Javier; Fonderflick, Jocelyn; Kelm, Detlev H.; Voigt, Christian C.

2012-01-01

Despite a commitment by the European Union to protect its migratory bat populations, conservation efforts are hindered by a poor understanding of bat migratory strategies and connectivity between breeding and wintering grounds. Traditional methods like mark-recapture are ineffective to study broad-scale bat migratory patterns. Stable hydrogen isotopes (δD) have been proven useful in establishing spatial migratory connectivity of animal populations. Before applying this tool, the method was calibrated using bat samples of known origin. Here we established the potential of δD as a robust geographical tracer of breeding origins of European bats by measuring δD in hair of five sedentary bat species from 45 locations throughout Europe. The δD of bat hair strongly correlated with well-established spatial isotopic patterns in mean annual precipitation in Europe, and therefore was highly correlated with latitude. We calculated a linear mixed-effects model, with species as random effect, linking δD of bat hair to precipitation δD of the areas of hair growth. This model can be used to predict breeding origins of European migrating bats. We used δ13C and δ15N to discriminate among potential origins of bats, and found that these isotopes can be used as variables to further refine origin predictions. A triple-isotope approach could thereby pinpoint populations or subpopulations that have distinct origins. Our results further corroborated stable isotope analysis as a powerful method to delineate animal migrations in Europe. PMID:22291947

Screening for Malnutrition in Community Dwelling Older Japanese: Preliminary Development and Evaluation of the Japanese Nutritional Risk Screening Tool (NRST).

PubMed

Htun, N C; Ishikawa-Takata, K; Kuroda, A; Tanaka, T; Kikutani, T; Obuchi, S P; Hirano, H; Iijima, K

2016-02-01

Early and effective screening for age-related malnutrition is an essential part of providing optimal nutritional care to older populations. This study was performed to evaluate the adaptation of the original SCREEN II questionnaire (Seniors in the Community: Risk Evaluation for Eating and Nutrition, version II) for use in Japan by examining its measurement properties and ability to predict nutritional risk and sarcopenia in community-dwelling older Japanese people. The ultimate objective of this preliminary validation study is to develop a license granted full Japanese version of the SCREEN II. The measurement properties and predictive validity of the NRST were examined in this cross-sectional study of 1921 community-dwelling older Japanese people. Assessments included medical history, and anthropometric and serum albumin measurements. Questions on dietary habits that corresponded to the original SCREEN II were applied to Nutritional Risk Screening Tool (NRST) scoring system. Nutritional risk was assessed by the Geriatric Nutrition Risk Index (GNRI) and the short form of the Mini-Nutritional Assessment (MNA-SF). Sarcopenia was diagnosed according to the criteria of the European Working Group on Sarcopenia in Older People. The nutritional risk prevalences determined by the GNRI and MNA-SF were 5.6% and 34.7%, respectively. The prevalence of sarcopenia was 13.3%. Mean NRST scores were significantly lower in the nutritionally at-risk than in the well-nourished groups. Concurrent validity analysis showed significant correlations between NRST scores and both nutritional risk parameters (GNRI or MNA-SF) and sarcopenia. The areas under the receiver operating characteristic curves (AUC) of NRST for the prediction of nutritional risk were 0.635 and 0.584 as assessed by GNRI and MNA-SF, respectively. AUCs for the prediction of sarcopenia were 0.602 (NRST), 0.655 (age-integrated NRST), and 0.676 (age and BMI-integrated NRST). These results indicate that the NRST is a promising screening tool for the prediction of malnutrition and sarcopenia in community-dwelling older Japanese people. Further development of a full Japanese version of the SCREEN II is indicated.

Stability of upper face sexual dimorphism in central European populations (Czech Republic) during the modern age.

PubMed

Bejdová, Šárka; Dupej, Ján; Krajíček, Václav; Velemínská, Jana; Velemínský, Petr

2018-01-01

One of the most fundamental issues in forensic anthropology is the determination of sex and population affinity based on various skeletal elements. Therefore, we compared the sexual dimorphism of the upper facial skeleton from a recent Czech population (twenty-first century) with that of a population from Early Modern Age Bohemia (sixteenth to eighteenth centuries). Methods of geometric morphometrics were applied. According to the results, sexual dimorphism in terms of size, shape, and form was statistically significant in both populations. The best results of sex estimation originated from analyses of form. Thus, both size and shape differences should be taken into account for determination of the sex. The accuracy of prediction achieved 91.1% for individuals in the recent population and 87.5% for individuals from the early modern population. Only minor differences were found between sexual dimorphism in the studied populations. We conclude that sexual dimorphism of the upper facial skeleton is stable during the relatively short time period.

The Original Michaelis Constant: Translation of the 1913 Michaelis-Menten Paper

PubMed Central

Johnson, Kenneth A.; Goody, Roger S.

2011-01-01

Nearly 100 years ago Michaelis and Menten published their now classic paper (Michaelis, L., and Menten, M. L. (1913) Die Kinetik der Invertinwirkung, Biochemische Zeitschrift 49, 333–369), in which they show that the rate of an enzyme-catalyzed reaction is proportional to the concentration of enzyme-substrate complex predicted by the Michaelis-Menten equation. Because the original text was written in German, yet is often quoted by English speaking authors, we undertook a complete translation of the 1913 publication, which we provide as an online supplement (http://pubs.acs.org). Here we introduce the translation, describe the historical context of the work, and show a new analysis of the original data. In doing so, we uncovered several surprises that reveal an interesting glimpse into the early history of enzymology. In particular, our re-analysis of Michaelis and Menten’s data using modern computational methods revealed an unanticipated rigor and precision in the original publication and uncovered a sophisticated, comprehensive analysis that has been overlooked in the century since their work was published. Michaelis and Menten not only analyzed initial velocity measurements, but they also fit their full time course data to the integrated form of the rate equations, including product inhibition, and derived a single global constant to represent all of their data. That constant was not the Michaelis constant, but rather, Vmax/Km, the specificity constant times the enzyme concentration (kcat/Km*E0). PMID:21888353

Cross-cultural adaptation of the Revised Korean version of the Fibromyalgia Impact Questionnaire: its association with physical function and quality of life.

PubMed

Seo, Seong-Rye; Park, Dong-Jin; Kang, Ji-Hyoun; Lee, Jeong-Won; Lee, Kyung-Eun; Wen, Lihui; Kim, Tae-Jong; Park, Yong-Wook; Lee, Shin-Seok

2016-05-01

Despite its shortcomings, the Fibromyalgia Impact Questionnaire (FIQ) is widely used to assess clinical symptoms and measure therapeutic changes in patients with fibromyalgia (FM). Recently, the revised version of the FIQ (FIQR) was released. In this study, we validated the Korean version of the FIQR and evaluated whether the revised version is superior to the original version in reflecting the physical function and quality of life of these patients. Seventy-nine patients with FM were invited to complete a questionnaire that included the original FIQ, FIQR, Multidimensional Health Assessment Questionnaire (MDHAQ), Rheumatology Attitudes Index (RAI), and Medical Outcome Study Short-Form 36 (SF-36). The test-retest reliability was assessed in 55 patients after 1 week, and the Spearman coefficients were 0.604-0.825 and Cronbach's alpha was 0.948 (95% confidence interval 0.930-0.964). The FIQR was significantly correlated with the pain visual analogue scale (VAS), fatigue VAS, RAI, MDHAQ, and physical and mental component summary scores of the SF-36. The FIQR was more strongly associated with the MDHAQ and SF-36 scores than with the original FIQ. Our study showed that the FIQR is a reliable, valid instrument for assessing patients with FM and performs better in the prediction of physical function and health status than the original version. © 2015 Asia Pacific League of Associations for Rheumatology and Wiley Publishing Asia Pty Ltd.

A selenium species in cerebrospinal fluid predicts conversion to Alzheimer's dementia in persons with mild cognitive impairment.

PubMed

Vinceti, Marco; Chiari, Annalisa; Eichmüller, Marcel; Rothman, Kenneth J; Filippini, Tommaso; Malagoli, Carlotta; Weuve, Jennifer; Tondelli, Manuela; Zamboni, Giovanna; Nichelli, Paolo F; Michalke, Bernhard

2017-12-19

Little is known about factors influencing progression from mild cognitive impairment to Alzheimer's dementia. A potential role of environmental chemicals and specifically of selenium, a trace element of nutritional and toxicological relevance, has been suggested. Epidemiologic studies of selenium are lacking, however, with the exception of a recent randomized trial based on an organic selenium form. We determined concentrations of selenium species in cerebrospinal fluid sampled at diagnosis in 56 participants with mild cognitive impairment of nonvascular origin. We then investigated the relation of these concentrations to subsequent conversion from mild cognitive impairment to Alzheimer's dementia. Twenty-one out of the 56 subjects developed Alzheimer's dementia during a median follow-up of 42 months; four subjects developed frontotemporal dementia and two patients Lewy body dementia. In a Cox proportional hazards model adjusting for age, sex, duration of sample storage, and education, an inorganic selenium form, selenate, showed a strong association with Alzheimer's dementia risk, with an adjusted hazard ratio of 3.1 (95% confidence interval 1.0-9.5) in subjects having a cerebrospinal fluid content above the median level, compared with those with lower concentration. The hazard ratio of Alzheimer's dementia showed little departure from unity for all other inorganic and organic selenium species. These associations were similar in analyses that measured exposure on a continuous scale, and also after excluding individuals who converted to Alzheimer's dementia at the beginning of the follow-up. These results indicate that higher amounts of a potentially toxic inorganic selenium form in cerebrospinal fluid may predict conversion from mild cognitive impairment to Alzheimer's dementia.

Collisionless encounters and the origin of the lunar inclination.

PubMed

Pahlevan, Kaveh; Morbidelli, Alessandro

2015-11-26

The Moon is generally thought to have formed from the debris ejected by the impact of a planet-sized object with the proto-Earth towards the end of planetary accretion. Models of the impact process predict that the lunar material was disaggregated into a circumplanetary disk and that lunar accretion subsequently placed the Moon in a near-equatorial orbit. Forward integration of the lunar orbit from this initial state predicts a modern inclination at least an order of magnitude smaller than the lunar value--a long-standing discrepancy known as the lunar inclination problem. Here we show that the modern lunar orbit provides a sensitive record of gravitational interactions with Earth-crossing planetesimals that were not yet accreted at the time of the Moon-forming event. The currently observed lunar orbit can naturally be reproduced via interaction with a small quantity of mass (corresponding to 0.0075-0.015 Earth masses eventually accreted to the Earth) carried by a few bodies, consistent with the constraints and models of late accretion. Although the encounter process has a stochastic element, the observed value of the lunar inclination is among the most likely outcomes for a wide range of parameters. The excitation of the lunar orbit is most readily reproduced via collisionless encounters of planetesimals with the Earth-Moon system with strong dissipation of tidal energy on the early Earth. This mechanism obviates the need for previously proposed (but idealized) excitation mechanisms, places the Moon-forming event in the context of the formation of Earth, and constrains the pristineness of the dynamical state of the Earth-Moon system.

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Federal Register 2010, 2011, 2012, 2013, 2014

2011-07-12

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Major geochemical processes in the evolution of carbonate-Aquifer systems

USGS Publications Warehouse

Hanshaw, B.B.; Back, W.

1979-01-01

As a result of recent advances by carbonate petrologists and geochemists, hydrologists are provided with new insights into the origin and explanation of many aquifer characteristics and hydrologic phenomena. Some major advances include the recognition that: (1) most carbonate sediments are of biological origin; (2) they have a strong bimodal size-distribution; and (3) they originate in warm shallow seas. Although near-surface ocean water is oversaturated with respect to calcite, aragonite, dolomite and magnesite, the magnesium-hydration barrier effectively prevents either the organic or inorganic formation of dolomite and magnesite. Therefore, calcareous plants and animals produce only calcite and aragonite in hard parts of their bodies. Most carbonate aquifers that are composed of sand-size material have a high initial porosity; the sand grains that formed these aquifers originated primarily as small shells, broken shell fragments of larger invertebrates, or as chemically precipitated oolites. Carbonate rocks that originated as fine-grained muds were initially composed primarily of aragonite needles precipitated by algae and have extremely low permeability that requires fracturing and dissolution to develop into aquifers. Upon first emergence, most sand beds and reefs are good aquifers; on the other hand, the clay-sized carbonate material initially has high porosity but low permeability, a poor aquifer property. Without early fracture development in response to influences of tectonic activity these calcilutites would not begin to develop into aquifers. As a result of selective dissolution, inversion of the metastable aragonite to calcite, and recrystallization, the porosity is collected into larger void spaces, which may not change the overall porosity, but greatly increases permeability. Another major process which redistributes porosity and permeability in carbonates is dolomitization, which occurs in a variety of environments. These environments include back-reefs, where reflux dolomites may form, highly alkaline, on-shore and continental lakes, and sabkha flats; these dolomites are typically associated with evaporite minerals. However, these processes cannot account for most of the regionally extensive dolomites in the geologic record. A major environment of regional dolomitization is in the mixing zone (zone of dispersion) where profound changes in mineralogy and redistribution of porosity and permeability occur from the time of early emergence and continuing through the time when the rocks are well-developed aquifers. The reactions and processes, in response to mixing waters of differing chemical composition, include dissolution and precipitation of carbonate minerals in addition to dolomitization. An important control on permeability distribution in a mature aquifer system is the solution of dolomite with concomitant precipitation of calcite in response to gypsum dissolution (dedolomitization). Predictive models developed by mass-transfer calculations demonstrate the controlling reactions in aquifer systems through the constraints of mass balance and chemical equilibrium. An understanding of the origin, chemistry, mineralogy and environments of deposition and accumulation of carbonate minerals together with a comprehension of diagenetic processes that convert the sediments to rocks and geochemical, tectonic and hydrologic phenomena that create voids are important to hydrologists. With this knowledge, hydrologists are better able to predict porosity and permeability distribution in order to manage efficiently a carbonate-aquifer system. ?? 1979.

Analyses of Genotypic Diversity among North, South, and Central American Isolates of Sugarcane Yellow Leaf Virus: Evidence for Colombian Origins and for Intraspecific Spatial Phylogenetic Variation

PubMed Central

Moonan, Francis; Mirkov, T. Erik

2002-01-01

We have analyzed the genotypic diversity of Sugarcane yellow leaf virus (SCYLV) collected from North, South, and Central America by fingerprinting assays and selective cDNA cloning and sequencing. One group of isolates from Colombia, designated the C-population, has been identified as residing at the root node between a separable superpopulation structure of SCYLV and other members of the family Luteoviridae, indicating that the progenitor viruses of the North, South, and Central American isolates of the SCYLV superpopulation most likely arose from a C-population structure. From a model of intrafamilial evolution (F. Moonan et al., Virology 269:156–171, 2000), a prediction could be made that within the SCYLV species, the capacity of genomic sequence divergence would range from lowest in the capsid protein open reading frame 3 (ORF 3) to highest in a region spanning across the carboxy-terminal end of the RNA-dependent RNA polymerase ORF. We have demonstrated the validity and applicability of this intrafamilial model for the prediction of intraspecies SCYLV diversity. Analysis of spatial phylogenetic variation (SPV) within the SCYLV isolates could not be assessed by application of a “partial likelihoods assessed through optimization” (PLATO)-derived intraspecies model alone. However, application of a PLATO-derived intrafamilial model with the intraspecies-derived model allowed distinction of three forms of SPV. Two of the SPV forms identified correspond to the extremes in a continuum of sequence evolution displayed in a SCYLV superpopulation structure, and the third form was diagnostic of a C-population structure. The application of these types of models has value in terms of predicting the types of SCYLV intraspecies diversity that may exist worldwide, and in general, may be useful in application for more informed design of transgenes for use in the elicitation of homology-dependent virus resistance mechanisms in transgenic plants. PMID:11773408

Testing the Predictive Capability of the High-Fidelity Generalized Method of Cells Using an Efficient Reformulation

NASA Technical Reports Server (NTRS)

Arnold, Steven M. (Technical Monitor); Bansal, Yogesh; Pindera, Marek-Jerzy

2004-01-01

The High-Fidelity Generalized Method of Cells is a new micromechanics model for unidirectionally reinforced periodic multiphase materials that was developed to overcome the original model's shortcomings. The high-fidelity version predicts the local stress and strain fields with dramatically greater accuracy relative to the original model through the use of a better displacement field representation. Herein, we test the high-fidelity model's predictive capability in estimating the elastic moduli of periodic composites characterized by repeating unit cells obtained by rotation of an infinite square fiber array through an angle about the fiber axis. Such repeating unit cells may contain a few or many fibers, depending on the rotation angle. In order to analyze such multi-inclusion repeating unit cells efficiently, the high-fidelity micromechanics model's framework is reformulated using the local/global stiffness matrix approach. The excellent agreement with the corresponding results obtained from the standard transformation equations confirms the new model's predictive capability for periodic composites characterized by multi-inclusion repeating unit cells lacking planes of material symmetry. Comparison of the effective moduli and local stress fields with the corresponding results obtained from the original Generalized Method of Cells dramatically highlights the original model's shortcomings for certain classes of unidirectional composites.

Adaptation of clinical prediction models for application in local settings.

PubMed

Kappen, Teus H; Vergouwe, Yvonne; van Klei, Wilton A; van Wolfswinkel, Leo; Kalkman, Cor J; Moons, Karel G M

2012-01-01

When planning to use a validated prediction model in new patients, adequate performance is not guaranteed. For example, changes in clinical practice over time or a different case mix than the original validation population may result in inaccurate risk predictions. To demonstrate how clinical information can direct updating a prediction model and development of a strategy for handling missing predictor values in clinical practice. A previously derived and validated prediction model for postoperative nausea and vomiting was updated using a data set of 1847 patients. The update consisted of 1) changing the definition of an existing predictor, 2) reestimating the regression coefficient of a predictor, and 3) adding a new predictor to the model. The updated model was then validated in a new series of 3822 patients. Furthermore, several imputation models were considered to handle real-time missing values, so that possible missing predictor values could be anticipated during actual model use. Differences in clinical practice between our local population and the original derivation population guided the update strategy of the prediction model. The predictive accuracy of the updated model was better (c statistic, 0.68; calibration slope, 1.0) than the original model (c statistic, 0.62; calibration slope, 0.57). Inclusion of logistical variables in the imputation models, besides observed patient characteristics, contributed to a strategy to deal with missing predictor values at the time of risk calculation. Extensive knowledge of local, clinical processes provides crucial information to guide the process of adapting a prediction model to new clinical practices.

Probabilistic prediction of barrier-island response to hurricanes

USGS Publications Warehouse

Plant, Nathaniel G.; Stockdon, Hilary F.

2012-01-01

Prediction of barrier-island response to hurricane attack is important for assessing the vulnerability of communities, infrastructure, habitat, and recreational assets to the impacts of storm surge, waves, and erosion. We have demonstrated that a conceptual model intended to make qualitative predictions of the type of beach response to storms (e.g., beach erosion, dune erosion, dune overwash, inundation) can be reformulated in a Bayesian network to make quantitative predictions of the morphologic response. In an application of this approach at Santa Rosa Island, FL, predicted dune-crest elevation changes in response to Hurricane Ivan explained about 20% to 30% of the observed variance. An extended Bayesian network based on the original conceptual model, which included dune elevations, storm surge, and swash, but with the addition of beach and dune widths as input variables, showed improved skill compared to the original model, explaining 70% of dune elevation change variance and about 60% of dune and shoreline position change variance. This probabilistic approach accurately represented prediction uncertainty (measured with the log likelihood ratio), and it outperformed the baseline prediction (i.e., the prior distribution based on the observations). Finally, sensitivity studies demonstrated that degrading the resolution of the Bayesian network or removing data from the calibration process reduced the skill of the predictions by 30% to 40%. The reduction in skill did not change conclusions regarding the relative importance of the input variables, and the extended model's skill always outperformed the original model.

The origin of inner Solar System water.

PubMed

Alexander, Conel M O'D

2017-05-28

Of the potential volatile sources for the terrestrial planets, the CI and CM carbonaceous chondrites are closest to the planets' bulk H and N isotopic compositions. For the Earth, the addition of approximately 2-4 wt% of CI/CM material to a volatile-depleted proto-Earth can explain the abundances of many of the most volatile elements, although some solar-like material is also required. Two dynamical models of terrestrial planet formation predict that the carbonaceous chondrites formed either in the asteroid belt ('classical' model) or in the outer Solar System (5-15 AU in the Grand Tack model). To test these models, at present the H isotopes of water are the most promising indicators of formation location because they should have become increasingly D-rich with distance from the Sun. The estimated initial H isotopic compositions of water accreted by the CI, CM, CR and Tagish Lake carbonaceous chondrites were much more D-poor than measured outer Solar System objects. A similar pattern is seen for N isotopes. The D-poor compositions reflect incomplete re-equilibration with H 2 in the inner Solar System, which is also consistent with the O isotopes of chondritic water. On balance, it seems that the carbonaceous chondrites and their water did not form very far out in the disc, almost certainly not beyond the orbit of Saturn when its moons formed (approx. 3-7 AU in the Grand Tack model) and possibly close to where they are found today.This article is part of the themed issue 'The origin, history and role of water in the evolution of the inner Solar System'. © 2017 The Author(s).

The SSME HPFTP interstage seals: Analysis and experiments for leakage and reaction-force coefficients

NASA Technical Reports Server (NTRS)

Childs, D. W.

1983-01-01

An improved theory for the prediction of the rotordynamic coefficients of turbulent annular seals was developed. Predictions from the theory are compared to the experimental results and an approach for the direct calculation of empirical turbulent coefficients from test data are introduced. An improved short seal solution is shown to do a better job of calculating effective stiffness and damping coefficients than either the original short seal solution or a finite length solution. However, the original short seal solution does a much better job of predicting equivalent added mass coefficient.

An improved reversible data hiding algorithm based on modification of prediction errors

NASA Astrophysics Data System (ADS)

Jafar, Iyad F.; Hiary, Sawsan A.; Darabkh, Khalid A.

2014-04-01

Reversible data hiding algorithms are concerned with the ability of hiding data and recovering the original digital image upon extraction. This issue is of interest in medical and military imaging applications. One particular class of such algorithms relies on the idea of histogram shifting of prediction errors. In this paper, we propose an improvement over one popular algorithm in this class. The improvement is achieved by employing a different predictor, the use of more bins in the prediction error histogram in addition to multilevel embedding. The proposed extension shows significant improvement over the original algorithm and its variations.

Comparison of updates to the Molly cow model to predict methane production from dairy cows fed pasture.

PubMed

Gregorini, P; Beukes, P C; Hanigan, M D; Waghorn, G; Muetzel, S; McNamara, J P

2013-08-01

Molly is a deterministic, mechanistic, dynamic model representing the digestion, metabolism, and production of a dairy cow. This study compared the predictions of enteric methane production from the original version of Molly (MollyOrigin) and 2 new versions of Molly. Updated versions included new ruminal fiber digestive parameters and animal hormonal parameters (Molly84) and a revised version of digestive and ruminal parameters (Molly85), using 3 different ruminal volatile fatty acid (VFA) stoichiometry constructs to describe the VFA pattern and methane (CH4) production (g of CH4/d). The VFA stoichiometry constructs were the original forage and mixed-diet VFA constructs and a new VFA stoichiometry based on a more recent and larger set of data that includes lactate and valerate production, amylolytic and cellulolytic bacteria, as well as protozoal pools. The models' outputs were challenged using data from 16 dairy cattle 26 mo old [standard error of the mean (SEM)=1.7], 82 (SEM=8.7) d in milk, producing 17 (SEM=0.2) kg of milk/d, and fed fresh-cut ryegrass [dry matter intake=12.3 (SEM=0.3) kg of DM/d] in respiration chambers. Mean observed CH4 production was 266±5.6 SEM (g/d). Mean predicted values for CH4 production were 287 and 258 g/d for MollyOrigin without and with the new VFA construct. Model Molly84 predicted 295 and 288 g of CH4/d with and without the new VFA settings. Model Molly85 predicted the same CH4 production (276 g/d) with or without the new VFA construct. The incorporation of the new VFA construct did not consistently reduce the low prediction error across the versions of Molly evaluated in the present study. The improvements in the Molly versions from MollyOrigin to Molly84 to Molly85 resulted in a decrease in mean square prediction error from 8.6 to 8.3 to 4.3% using the forage diet setting. The majority of the mean square prediction error was apportioned to random bias (e.g., 43, 65, and 70% in MollyOrigin, Molly84, and Molly85, respectively, on the forage setting, showing that with the updated versions a greater proportion of error was random). The slope bias was less than 2% in all cases. We concluded that, of the versions of Molly used for pastoral systems, Molly85 has the capability to predict CH4 production from grass-fed dairy cows with the highest accuracy. Copyright © 2013 American Dairy Science Association. Published by Elsevier Inc. All rights reserved.

The energetic and carbon economic origins of leaf thermoregulation.

PubMed

Michaletz, Sean T; Weiser, Michael D; McDowell, Nate G; Zhou, Jizhong; Kaspari, Michael; Helliker, Brent R; Enquist, Brian J

2016-08-22

Leaf thermoregulation has been documented in a handful of studies, but the generality and origins of this pattern are unclear. We suggest that leaf thermoregulation is widespread in both space and time, and originates from the optimization of leaf traits to maximize leaf carbon gain across and within variable environments. Here we use global data for leaf temperatures, traits and photosynthesis to evaluate predictions from a novel theory of thermoregulation that synthesizes energy budget and carbon economics theories. Our results reveal that variation in leaf temperatures and physiological performance are tightly linked to leaf traits and carbon economics. The theory, parameterized with global averaged leaf traits and microclimate, predicts a moderate level of leaf thermoregulation across a broad air temperature gradient. These predictions are supported by independent data for diverse taxa spanning a global air temperature range of ∼60 °C. Moreover, our theory predicts that net carbon assimilation can be maximized by means of a trade-off between leaf thermal stability and photosynthetic stability. This prediction is supported by globally distributed data for leaf thermal and photosynthetic traits. Our results demonstrate that the temperatures of plant tissues, and not just air, are vital to developing more accurate Earth system models.

Prediction of Return-to-original-work after an Industrial Accident Using Machine Learning and Comparison of Techniques

PubMed Central

2018-01-01

Background Many studies have tried to develop predictors for return-to-work (RTW). However, since complex factors have been demonstrated to predict RTW, it is difficult to use them practically. This study investigated whether factors used in previous studies could predict whether an individual had returned to his/her original work by four years after termination of the worker's recovery period. Methods An initial logistic regression analysis of 1,567 participants of the fourth Panel Study of Worker's Compensation Insurance yielded odds ratios. The participants were divided into two subsets, a training dataset and a test dataset. Using the training dataset, logistic regression, decision tree, random forest, and support vector machine models were established, and important variables of each model were identified. The predictive abilities of the different models were compared. Results The analysis showed that only earned income and company-related factors significantly affected return-to-original-work (RTOW). The random forest model showed the best accuracy among the tested machine learning models; however, the difference was not prominent. Conclusion It is possible to predict a worker's probability of RTOW using machine learning techniques with moderate accuracy. PMID:29736160

Program of Research in Flight Dynamics in the JIAFS, George Washington University at NASA Langley Research Center

NASA Technical Reports Server (NTRS)

Klein, Vladislav

2002-01-01

The program objectives are fully defined in the original proposal entitled 'Program of Research in Flight Dynamics in GW at NASA Langley Research Center,' which was originated March 20, 1975, and in the renewals of the research program from December 1, 2000 to November 30, 2001. The program in its present form includes three major topics: 1) the improvement of existing methods and development of new methods for wind tunnel and flight test data analysis, 2) the application of these methods to wind tunnel and flight test data obtained from advanced airplanes, 3) the correlation of flight results with wind tunnel measurements, and theoretical predictions. The Principal Investigator of the program is Dr. Vladislav Klein. Three Graduate Research Scholar Assistants (K. G. Mas, M. M. Eissa and N. M. Szyba) also participated in the program. Specific developments in the program during the period Dec. 1, 2001 through Nov. 30, 2002 included: 1) Data analysis of highly swept delta wing aircraft from wind and water tunnel data, and 2) Aerodynamic characteristics of the radio control aircraft from flight test.

The evolution, morphology, and development of fern leaves

PubMed Central

Vasco, Alejandra; Moran, Robbin C.; Ambrose, Barbara A.

2013-01-01

Leaves are lateral determinate structures formed in a predictable sequence (phyllotaxy) on the flanks of an indeterminate shoot apical meristem. The origin and evolution of leaves in vascular plants has been widely debated. Being the main conspicuous organ of nearly all vascular plants and often easy to recognize as such, it seems surprising that leaves have had multiple origins. For decades, morphologists, anatomists, paleobotanists, and systematists have contributed data to this debate. More recently, molecular genetic studies have provided insight into leaf evolution and development mainly within angiosperms and, to a lesser extent, lycophytes. There has been recent interest in extending leaf evolutionary developmental studies to other species and lineages, particularly in lycophytes and ferns. Therefore, a review of fern leaf morphology, evolution and development is timely. Here we discuss the theories of leaf evolution in ferns, morphology, and diversity of fern leaves, and experimental results of fern leaf development. We summarize what is known about the molecular genetics of fern leaf development and what future studies might tell us about the evolution of fern leaf development. PMID:24027574

Science Questions for the Post-SIRTF and Herschel Era

NASA Technical Reports Server (NTRS)

Werner, Michael

2004-01-01

The contents include the following: 1. SIRTF. Long wavelength surveys planned for SIRTF. Galaxy Discovery Rates for Future Missions. Impact of SIRTF s Improved Resolution at 160um: Resolving the Background. 2. Polarimetry. Submillimeter Polarimetry - The State of Play. Magnetic Vectors Across the Orion Molecular Cloud Core. Neutral and Ionized Molecular Spectral Lines. Variation of Polarization With Wavelength. The Polarization Spectrum. Submillimeter Polarimetry - Looking Ahead. 3.Confusion. Confusion at 500, 600 micron. 4. Extragalactic Science. Do Massive Black Holes and Galaxy Bulges form Together? 5. Galactic Science. Can We See the First Generations of Stars and Metal Formation? The Birth of Planets and the Origins of Life. Spatial Resolution at 100 microns. Far-ir/Sub-mm Transitions of Linear Carbon Clusters. Predicted Spectra of Glycine.

TOPEX orbital radiation study

NASA Technical Reports Server (NTRS)

Stassinopoulos, E. G.; Barth, J. M.

1984-01-01

The space radiation environment of the TOPEX spacecraft is investigated. A single trajectory was considered. The external (surface incident) charged particle radiation, predicted for the satellite, is determined by orbital flux integration for the specified trajectory. The latest standard models of the environment are used in the calculations. The evaluation is performed for solar maximum conditions. The spacecraft exposure to cosmic rays of galactic origin is evaluated over its flight path through the magnetosphere in terms of geomagnetic shielding effects, both for surface incident heavy ions and for particles emerging behind different material thickness. Limited shielding and dose evaluations are performed for simple infinite slab and spherical geometries. Results, given in graphical and tabular form, are analyzed, explained, and discussed. Conclusions are presented and commented on.

Ultra low power consumption for self-oscillating nanoelectromechanical systems constructed by contacting two nanowires.

PubMed

Barois, T; Ayari, A; Vincent, P; Perisanu, S; Poncharal, P; Purcell, S T

2013-04-10

We report here the observation of a new self-oscillation mechanism in nanoelectromechanical systems (NEMS). A highly resistive nanowire was positioned to form a point-contact at a chosen vibration node of a silicon carbide nanowire resonator. Spontaneous and robust mechanical oscillations arise when a sufficient DC voltage is applied between the two nanowires. An original model predicting the threshold voltage is used to estimate the piezoresistivity of the point-contact in agreement with the observations. The measured input power is in the pW-range which is the lowest reported value for such systems. The simplicity of the contacting procedure and the low power consumption open a new route for integrable and low-loss self-excited NEMS devices.

Chemical structure, biosynthesis and synthesis of free and glycosylated pyridinolines formed by cross-link of bone and synovium collagen.

PubMed

Anastasia, Luigi; Rota, Paola; Anastasia, Mario; Allevi, Pietro

2013-09-21

This review focuses on the chemical structure, biosynthesis and synthesis of free and glycosylated pyridinolines (Pyds), fluorescent collagen cross-links, with a pyridinium salt structure. Pyds derive from the degradation of bone collagen and have attracted attention for their use as biochemical markers of bone resorption and to assess fracture risk prediction in persons suffering from osteoporosis, bone cancer and other bone or collagen diseases. We consider and critically discuss all reported syntheses of free and glycosylated Pyds evidencing an unrevised chemistry, original and of general utility, analysis of which allows us to also support a previously suggested non-enzymatic formation of Pyds in collagen better rationalizing and justifying the chemical events.

Origin of the spike-timing-dependent plasticity rule

NASA Astrophysics Data System (ADS)

Cho, Myoung Won; Choi, M. Y.

2016-08-01

A biological synapse changes its efficacy depending on the difference between pre- and post-synaptic spike timings. Formulating spike-timing-dependent interactions in terms of the path integral, we establish a neural-network model, which makes it possible to predict relevant quantities rigorously by means of standard methods in statistical mechanics and field theory. In particular, the biological synaptic plasticity rule is shown to emerge as the optimal form for minimizing the free energy. It is further revealed that maximization of the entropy of neural activities gives rise to the competitive behavior of biological learning. This demonstrates that statistical mechanics helps to understand rigorously key characteristic behaviors of a neural network, thus providing the possibility of physics serving as a useful and relevant framework for probing life.

Probabilistic Modeling of Aircraft Trajectories for Dynamic Separation Volumes

NASA Technical Reports Server (NTRS)

Lewis, Timothy A.

2016-01-01

With a proliferation of new and unconventional vehicles and operations expected in the future, the ab initio airspace design will require new approaches to trajectory prediction for separation assurance and other air traffic management functions. This paper presents an approach to probabilistic modeling of the trajectory of an aircraft when its intent is unknown. The approach uses a set of feature functions to constrain a maximum entropy probability distribution based on a set of observed aircraft trajectories. This model can be used to sample new aircraft trajectories to form an ensemble reflecting the variability in an aircraft's intent. The model learning process ensures that the variability in this ensemble reflects the behavior observed in the original data set. Computational examples are presented.

The origin of replicators and reproducers

PubMed Central

Szathmáry, Eörs

2006-01-01

Replicators are fundamental to the origin of life and evolvability. Their survival depends on the accuracy of replication and the efficiency of growth relative to spontaneous decay. Infrabiological systems are built of two coupled autocatalytic systems, in contrast to minimal living systems that must comprise at least a metabolic subsystem, a hereditary subsystem and a boundary, serving respective functions. Some scenarios prefer to unite all these functions into one primordial system, as illustrated in the lipid world scenario, which is considered as a didactic example in detail. Experimentally produced chemical replicators grow parabolically owing to product inhibition. A selection consequence is survival of everybody. The chromatographized replicator model predicts that such replicators spreading on surfaces can be selected for higher replication rate because double strands are washed away slower than single strands from the surface. Analysis of real ribozymes suggests that the error threshold of replication is less severe by about one order of magnitude than thought previously. Surface-bound dynamics is predicted to play a crucial role also for exponential replicators: unlinked genes belonging to the same genome do not displace each other by competition, and efficient and accurate replicases can spread. The most efficient form of such useful population structure is encapsulation by reproducing vesicles. The stochastic corrector model shows how such a bag of genes can survive, and what the role of chromosome formation and intragenic recombination could be. Prebiotic and early evolution cannot be understood without the models of dynamics. PMID:17008217

The origin and evolution of low-level potential vorticity anomalies during a case of Tasman Sea cyclogenesis

NASA Astrophysics Data System (ADS)

Revell, Michael J.; Ridley, Roger N.

1995-10-01

The rapid development (15 hPa deepening in 12hours) of an intense, shallow and small-scale ( 300km) cyclone off the east coast of Australia was studied, in the context of potential vorticity (PV) thinking. High-resolution spatial and temporal fields generated by a mesoscale weather prediction model, embedded within ECMWF data were used. This case was well simulated, as verified by the few available observations at neighbouring stations, and by satellite imagery. The PV distribution within this cyclone was computed from the model fields and the origin of its component parts established using backward trajectories. These indicated that at low levels the primary mechanism of PV production was the vertical gradient of latent heat release in a frontal cloud band. Above the level of maximum heating this process reversed sign with corresponding destruction of PV. As the heating became shallow enough and intense enough a low level vortex formed with a vertical scale of 2 3km and a wave-CISK like normal mode structure. The length scale and growth rate of this mode agreed well with the observed cyclone, unlike the classical explanation for this type of development (the pure baroclinic instability mechanism of Charney and Eady) which, even including moisture, still predicts length scales of over a 1000km and doubling times of at least a day.

Life's Late Digital Revolution and Why It Matters for the Study of the Origins of Life.

PubMed

Baum, David A; Lehman, Niles

2017-08-25

The information contained in life exists in two forms, analog and digital. Analog information is manifest mainly in the differing concentrations of chemicals that get passed from generation to generation and can vary from cell to cell. Digital information is encoded in linear polymers such as DNA and RNA, whose side chains come in discrete chemical forms. Here, we argue that the analog form of information preceded the digital. Acceptance of this dichotomy, and this progression, can help direct future studies on how life originated and initially complexified on the primordial Earth, as well as expected trajectories for other, independent origins of complex life.

Origins of the specialization for letters and numbers in ventral occipitotemporal cortex.

PubMed

Hannagan, Thomas; Amedi, Amir; Cohen, Laurent; Dehaene-Lambertz, Ghislaine; Dehaene, Stanislas

2015-07-01

Deep in the occipitotemporal cortex lie two functional regions, the visual word form area (VWFA) and the number form area (NFA), which are thought to play a special role in letter and number recognition, respectively. We review recent progress made in characterizing the origins of these symbol form areas in children or adults, sighted or blind subjects, and humans or monkeys. We propose two non-mutually-exclusive hypotheses on the origins of the VWFA and NFA: the presence of a connectivity bias, and a sensitivity to shape features. We assess the explanatory power of these hypotheses, describe their consequences, and offer several experimental tests. Copyright © 2015 Elsevier Ltd. All rights reserved.

The different molecular forms of urine neutrophil gelatinase-associated lipocalin present in dogs with urinary diseases.

PubMed

Hsu, Wei-Li; Chiou, Hsiao-Chi; Tung, Kwong-Chung; Belot, Guillaume; Virilli, Anais; Wong, Min-Liang; Lin, Fong-Yuan; Lee, Ya-Jane

2014-08-27

Neutrophil gelatinase-associated lipocalin (NGAL) is a useful biomarker for the early prediction of renal diseases. NGAL may exist as monomer, dimer and/or NGAL/MMP-9 complex forms in humans. In this study, the existence of various forms of NGAL in urine (uNGAL) was determined and whether these forms are related to the different urinary diseases found in dogs is further discussed. Eighty-one urine samples from dogs with different forms of renal disease (41), pyuria (19) and a number of non-renal related diseases (10), as well as healthy dogs (11), were collected. uNGAL concentrations and their molecular forms in dogs were measured by ELISA and Western blot analysis, respectively. The uNGAL concentrations of dogs with pyuria (median: 15.35 ng/mL) were significantly higher than those of the healthy control animals (median: 3.92 ng/mL) (p < 0.01), but lower than those of dogs with renal diseases (median: 23.77 ng/mL). Each NGAL molecular form could be detected in dog urine. In particular, monomer was detected more frequently in patients with renal disease than those with non-renal diseases; while the dimer form appeared in a significantly higher percentage of cases with pyuria compared to those without pyuria. The NGAL/MMP-9 complex was found to exist not only in the patients with cystitis, but also in the cases with renal injury. Different molecular forms of uNGAL can indicate different origins of the urinary abnormalities. Determining the molecular forms of uNGAL present in diseased dogs may provide clinical workers with a tool that will help the early and more precise detection of different urinary diseases.

Montmorillonite-catalysed formation of RNA oligomers: the possible role of catalysis in the origins of life

PubMed Central

Ferris, James P

2006-01-01

Large deposits of montmorillonite are present on the Earth today and it is believed to have been present at the time of the origin of life and has recently been detected on Mars. It is formed by aqueous weathering of volcanic ash. It catalyses the formation of oligomers of RNA that contain monomer units from 2 to 30–50. Oligomers of this length are formed because this catalyst controls the structure of the oligomers formed and does not generate all possible isomers. Evidence of sequence-, regio- and homochiral selectivity in these oligomers has been obtained. Postulates on the role of selective versus specific catalysts on the origins of life are discussed. An introduction to the origin of life is given with an emphasis on reaction conditions based on the recent data obtained from zircons 4.0–4.5 Ga. PMID:17008218

Assessing the Formation of Ungrouped Achondrite Northwest Africa 8186: Residue, Crystallization Product, or Recrystallized Chondrite?

NASA Technical Reports Server (NTRS)

Srinivasan, P.; McCubbin, F. M.; Agee, C. B.

2016-01-01

The recent discoveries of primitive achondrites, metachondrites, and type 7 chondrites challenge the long held idea that all chondrites and achondrites form on separate parent bodies. These meteorites have experienced metamorphic temperatures above petrologic type 6 and have partially melted to various degrees. However, because of their isotopic and compositional similarities to both undifferentiated and differentiated groups, the provenance of these 'type 6+' meteorites remains largely unknown. CK and CV chondrites have recently been linked to a few achondrites due to their strong compositional, mineralogical, and isotopic similarities], suggesting a common origin between these meteorites. Although CVs have generally undergone low degrees of alteration near petrologic type 3, CKs have experienced a wide range of thermal alteration from petrologic type 3 to 6. Thermal evolution models on early accreting bodies predict that an early forming body can partially differentiate due to radiogenic heating, and, as a result, form radial layers of material increasing in thermal grade (types 3 to 6+) from the unmelted chondritic surface towards the differentiated core.Northwest Africa (NWA) 8186 is an ungrouped achondrite that provides compelling evidence for higher degrees of thermal processing and/or melting and differentiation on some CK/CV parent bodies. NWA 8186 plots on the CCAM line on a 3-oxygen isotope diagram directly with CK and CV chondrites and also plots with the CKs in regards to Cr isotopes. This meteorite is dominated by Nickel(II)Oxygen-rich olivine (less than 80%), lacks iron metal, and contains four oxide phases, indicating a high fOxygen (above FMQ) similar to the CKs. Additionally, NWA 8186 does not contain chondrules. We have further investigated the origins of NWA 8186 by examining and comparing the bulk composition of this CK-like achondrite with CK and CV chondrites, allowing us to assess the various scenarios in which NWA 8186 may have formed from CK/CV precursor material.

Analysis of the origin of predictability in human communications

NASA Astrophysics Data System (ADS)

Zhang, Lin; Liu, Yani; Wu, Ye; Xiao, Jinghua

2014-01-01

Human behaviors in daily life can be traced by their communications via electronic devices. E-mails, short messages and cell-phone calls can be used to investigate the predictability of communication partners’ patterns, because these three are the most representative and common behaviors in daily communications. In this paper, we show that all the three manners have apparent predictability in partners’ patterns, and moreover, the short message users’ sequences have the highest predictability among the three. We also reveal that people with fewer communication partners have higher predictability. Finally, we investigate the origin of predictability, which comes from two aspects: one is the intrinsic pattern in the partners sequence, that is, people have the preference of communicating with a fixed partner after another fixed one. The other aspect is the burst, which is communicating with the same partner several times in a row. The high burst in short message communication pattern is one of the main reasons for its high predictability, the intrinsic pattern in e-mail partners sequence is the main reason for its predictability, and the predictability of cell-phone call partners sequence comes from both aspects.

Significance of Vestibular Testing on Distinguishing the Nerve of Origin for Vestibular Schwannoma and Predicting the Preservation of Hearing

PubMed Central

He, Yu-Bo; Yu, Chun-Jiang; Ji, Hong-Ming; Qu, Yan-Ming; Chen, Ning

2016-01-01

Background: Determining the nerve of origin for vestibular schwannoma (VS), as a method for predicting hearing prognosis, has not been systematically considered. The vestibular test can be used to investigate the function of the superior vestibular nerve (SVN) and the inferior vestibular nerve (IVN). This study aimed to preoperatively distinguish the nerve of origin for VS patients using the vestibular test, and determine if this correlated with hearing preservation. Methods: A total of 106 patients with unilateral VS were enrolled in this study prospectively. Each patient received a caloric test, vestibular-evoked myogenic potential (VEMP) test, and cochlear nerve function test (hearing) before the operation and 1 week, 3, and 6 months, postoperatively. All patients underwent surgical removal of the VS using the suboccipital approach. During the operation, the nerve of tumor origin (SVN or IVN) was identified by the surgeon. Tumor size was measured by preoperative magnetic resonance imaging. Results: The nerve of tumor origin could not be unequivocally identified in 38 patients (38/106, 35.80%). These patients were not subsequently evaluated. In 26 patients (nine females, seventeen males), tumors arose from the SVN and in 42 patients (18 females, 24 males), tumors arose from the IVN. Comparing with the nerve of origins (SVN and IVN) of tumors, the results of the caloric tests and VEMP tests were significantly different in tumors originating from the SVN and the IVN in our study. Hearing was preserved in 16 of 26 patients (61.54%) with SVN-originating tumors, whereas hearing was preserved in only seven of 42 patients (16.67%) with IVN-originating tumors. Conclusions: Our data suggest that caloric and VEMP tests might help to identify whether VS tumors originate from the SVN or IVN. These tests could also be used to evaluate the residual function of the nerves after surgery. Using this information, we might better predict the preservation of hearing for patients. PMID:26996474

Caustics and the growth of droplets

NASA Astrophysics Data System (ADS)

Govindarajan, Rama; Ravichandran, S.; Ray, Samriddhi; Deepu, P.

Caustics are formed when inertial particles of very different velocities collide in a flow, and are a consequence of the dissipative nature of particle motion in a suspension. Using a model vortex-dominated flow with heavy droplets in a saturated environment, we suggest that sling caustics form only within a neighbourhood around a vortex, the square of whose radius is proportional to the product of circulation and particle inertia. Droplets starting close to this critical radius congregate very close together, resulting in large spikes in (Lagrangian) number density. Allowing for merger when droplets collide, we show that droplets starting out close to the critical radius display a much more rapid growth in size than those starting elsewhere, and a large fraction of the large droplets are those that originate within the caustics-forming region. We test these predictions in a two-dimensional simulation of turbulent flow. We hope that our study will be of interest in long-standing problems of physical interest such as the mechanism of broadening of droplet spectra in a turbulent flow. Support from the Ministry of Earth Sciences, Government of India for the project Coupled physical processes in the Bay of Bengal and monsoon air-sea interaction under OMM is gratefully acknowledged.

Corona accretion in active galactic nuclei and the observational test

NASA Astrophysics Data System (ADS)

Qiao, E.; Liu, B.; Taam, R.; Yuan, W.

2017-10-01

In this talk, we propose a new accretion model, in which the matter is accreted initially in the form of a vertically extended, hot gas (corona) to the central supermassive black hole by capturing the interstellar medium or the stellar wind in active galactic nuclei (AGNs). In this scenario, when the initial mass accretion rate is greater than about 0.01 \\dot M_{Edd}, at a critical radius r_{d}, part of the hot gas begins to condense on to the equatorial disc plane of the black hole, forming an inner cold accretion disc. Then, the matter is accreted in the form of a disc-corona structure extending down to the ISCO of the black hole. We calculate the theoretical structure and the corresponding emergent spectra of the model. It is shown that the model can naturally explain the origin of the X-ray emission in AGNs. Meanwhile the model predicts a new geometry of the accretion flow, which can very well explain some observations, such as the correlation between the hard X-ray slope Γ and the reflection scaling factor R found in AGNs. Finally, we discuss the potential applications of the model to high mass X-ray binaries.

Experimental alteration of artificial and natural impact melt rock from the Chesapeake Bay impact structure

USGS Publications Warehouse

Declercq, J.; Dypvik, H.; Aagaard, Per; Jahren, J.; Ferrell, R.E.; Horton, J. Wright

2009-01-01

The alteration or transformation of impact melt rock to clay minerals, particularly smectite, has been recognized in several impact structures (e.g., Ries, Chicxulub, Mj??lnir). We studied the experimental alteration of two natural impact melt rocks from suevite clasts that were recovered from drill cores into the Chesapeake Bay impact structure and two synthetic glasses. These experiments were conducted at hydrothermal temperature (265 ??C) in order to reproduce conditions found in meltbearing deposits in the first thousand years after deposition. The experimental results were compared to geochemical modeling (PHREEQC) of the same alteration and to original mineral assemblages in the natural melt rock samples. In the alteration experiments, clay minerals formed on the surfaces of the melt particles and as fine-grained suspended material. Authigenic expanding clay minerals (saponite and Ca-smectite) and vermiculite/chlorite (clinochlore) were identified in addition to analcime. Ferripyrophyllite was formed in three of four experiments. Comparable minerals were predicted in the PHREEQC modeling. A comparison between the phases formed in our experiments and those in the cores suggests that the natural alteration occurred under hydrothermal conditions similar to those reproduced in the experiment. ?? 2009 The Geological Society of America.

A self-consistent high- and low-frequency scattering model for cirrus

NASA Astrophysics Data System (ADS)

Baran, Anthony J.; Cotton, Richard; Havemann, Stephan; C.-Labonnote, Laurent; Marenco, Franco

2013-05-01

This paper demonstrates that an ensemble model of cirrus ice crystals that follows observed mass-dimensional power laws can predict the scattering properties of cirrus across the electromagnetic spectrum, without the need for tailor made scattering models for particular regions of the spectrum. The ensemble model predicts a mass-dimensional power law of the following form, mass ∝ D2 (where D is the maximum dimension of the ice crystal). This same mass-dimensional power law is applied across the spectrum to predict the particle size distribution (PSD) using a moment estimation parameterization of the PSD. The PSD parameterization predicts the original PSD, using in-situ estimates (bulk measurements) of the ice water content (IWC) and measurements of the in-cloud temperature; the measurements were obtained from a number of mid-latitude cirrus cases, which occurred over the U.K. during the winter and spring of 2010. It is demonstrated that the ensemble model predicts lidar backscatter estimates, at 0.355 μm, of the volume extinction coefficient and total solar optical depth to within current experimental uncertainties, hyperspectral brightness temperature measurements of the terrestrial region (800 cm-1 - 1200 cm-1) to generally well within ±1 K in the window regions, and the 35 GHz radar reflectivity to within ±2 dBZ. Therefore, for simulation of satellite radiances within general circulation models, and retrieval of cirrus properties, scattering models, which are demonstrated to be physically consistent across the electromagnetic spectrum, should be preferred.

Override the controversy: Analytic thinking predicts endorsement of evolution.

PubMed

Gervais, Will M

2015-09-01

Despite overwhelming scientific consensus, popular opinions regarding evolution are starkly divided. In the USA, for example, nearly one in three adults espouse a literal and recent divine creation account of human origins. Plausibly, resistance to scientific conclusions regarding the origins of species-like much resistance to other scientific conclusions (Bloom & Weisberg, 2007)-gains support from reliably developing intuitions. Intuitions about essentialism, teleology, agency, and order may combine to make creationism potentially more cognitively attractive than evolutionary concepts. However, dual process approaches to cognition recognize that people can often analytically override their intuitions. Two large studies (total N=1324) found consistent evidence that a tendency to engage analytic thinking predicted endorsement of evolution, even controlling for relevant demographic, attitudinal, and religious variables. Meanwhile, exposure to religion predicted reduced endorsement of evolution. Cognitive style is one factor among many affecting opinions on the origin of species. Copyright © 2015 Elsevier B.V. All rights reserved.

Prediction of cardiovascular risk in rheumatoid arthritis: performance of original and adapted SCORE algorithms.

PubMed

Arts, E E A; Popa, C D; Den Broeder, A A; Donders, R; Sandoo, A; Toms, T; Rollefstad, S; Ikdahl, E; Semb, A G; Kitas, G D; Van Riel, P L C M; Fransen, J

2016-04-01

Predictive performance of cardiovascular disease (CVD) risk calculators appears suboptimal in rheumatoid arthritis (RA). A disease-specific CVD risk algorithm may improve CVD risk prediction in RA. The objectives of this study are to adapt the Systematic COronary Risk Evaluation (SCORE) algorithm with determinants of CVD risk in RA and to assess the accuracy of CVD risk prediction calculated with the adapted SCORE algorithm. Data from the Nijmegen early RA inception cohort were used. The primary outcome was first CVD events. The SCORE algorithm was recalibrated by reweighing included traditional CVD risk factors and adapted by adding other potential predictors of CVD. Predictive performance of the recalibrated and adapted SCORE algorithms was assessed and the adapted SCORE was externally validated. Of the 1016 included patients with RA, 103 patients experienced a CVD event. Discriminatory ability was comparable across the original, recalibrated and adapted SCORE algorithms. The Hosmer-Lemeshow test results indicated that all three algorithms provided poor model fit (p<0.05) for the Nijmegen and external validation cohort. The adapted SCORE algorithm mainly improves CVD risk estimation in non-event cases and does not show a clear advantage in reclassifying patients with RA who develop CVD (event cases) into more appropriate risk groups. This study demonstrates for the first time that adaptations of the SCORE algorithm do not provide sufficient improvement in risk prediction of future CVD in RA to serve as an appropriate alternative to the original SCORE. Risk assessment using the original SCORE algorithm may underestimate CVD risk in patients with RA. Published by the BMJ Publishing Group Limited. For permission to use (where not already granted under a licence) please go to http://www.bmj.com/company/products-services/rights-and-licensing/

Ecotypic differentiation between urban and rural populations of the grasshopper Chorthippus brunneus relative to climate and habitat fragmentation.

PubMed

San Martin Y Gomez, Gilles; Van Dyck, Hans

2012-05-01

Urbanization alters environmental conditions in multiple ways and offers an ecological or evolutionary challenge for organisms to cope with. Urban areas typically have a warmer climate and strongly fragmented herbaceous vegetation; the urban landscape matrix is often assumed to be hostile for many organisms. Here, we addressed the issue of evolutionary differentiation between urban and rural populations of an ectotherm insect, the grasshopper Chorthippus brunneus. We compared mobility-related morphology and climate-related life history traits measured on the first generation offspring of grasshoppers from urban and rural populations reared in a common garden laboratory experiment. We predicted (1) the urban phenotype to be more mobile (i.e., lower mass allocation to the abdomen, longer relative femur and wing lengths) than the rural phenotype; (2) the urban phenotype to be more warm adapted (e.g., higher female body mass); and (3) further evidence of local adaptation in the form of significant interaction effects between landscape of origin and breeding temperature. Both males and females of urban origin had significantly longer relative femur and wing lengths and lower mass allocation to the abdomen (i.e., higher investment in thorax and flight muscles) relative to individuals of rural origin. The results were overall significant but small (2-4%). Body mass and larval growth rate were much higher (+10%) in females of urban origin. For the life history traits, we did not find evidence for significant interaction effects between the landscape of origin and the two breeding temperatures. Our results point to ecotypic differentiation with urbanization for mobility-related morphology and climate-related life history traits. We argue that the warmer urban environment has an indirect effect through longer growth season rather than direct effects on the development.

On Predicting Form and Meaning in a Second Language

ERIC Educational Resources Information Center

Ito, Aine; Martin, Andrea E.; Nieuwland, Mante S.

2017-01-01

We used event-related potentials (ERP) to investigate whether Spanish-English bilinguals preactivate form and meaning of predictable words. Participants read high-cloze sentence contexts (e.g., "The student is going to the library to borrow a..."), followed by the predictable word ("book"), a word that was form-related…

Predictive Factors of Cytomegalovirus Seropositivity among Pregnant Women in Paris, France

PubMed Central

N’Diaye, Dieynaba S.; Yazdanpanah, Yazdan; Krivine, Anne; Andrieu, Thibaut; Rozenberg, Flore; Picone, Olivier; Tsatsaris, Vassilis; Goffinet, François; Launay, Odile

2014-01-01

Background Cytomegalovirus (CMV) is the most frequent cause of congenital infection. The objective of this study was to evaluate predictive factors for CMV seronegativity in a cohort of pregnant women in Paris, France. Methods Pregnant women enrolled in a prospective cohort during the 2009 A/H1N1 pandemic were tested for CMV IgG antibodies. Variables collected were age, geographic origin, lifestyle, work characteristics, socioeconomic status, gravidity, parity and number of children at home. A multivariate logistic regression model was used to identify independent predictive factors for CMV seropositivity. Results Among the 826 women enrolled, 389 (47.1%) were primiparous, and 552 (67.1%) had Metropolitan France as a geographic origin. Out of these, 355 (i.e. 57.0%, 95% confidence interval (CI): [53.6%–60.4%]) were CMV seropositive: 43.7% (95% CI:[39.5%–47.9%]) in those whose geographic origin was Metropolitan France and 84.1% in those with other origins (95% CI:[79.2%–88.3%]). Determinants associated with CMV seropositivity in a multivariate logistic regression model were: (i) geographic origin (p<0.001(compared with Metropolitan France, geographic origins of Africa adjusted odds ratio (aOR) 21.2, 95% CI:[9.7–46.5], French overseas departments and territories and other origin, aOR 7.5, 95% CI:[3.9–14.6], and Europe or Asia, aOR 2.2, 95% CI: [1.3–3.7]); and (ii) gravidity (p = 0.019), (compared with gravidity = 1, if gravidity≥3, aOR = 1.5, 95% CI: [1.1–2.2]; if gravidity = 2, aOR = 1.0, 95% CI: [0.7–1.4]). Work characteristics and socioeconomic status were not independently associated with CMV seropositivity. Conclusions In this cohort of pregnant women, a geographic origin of Metropolitan France and a low gravidity were predictive factors for CMV low seropositivity. Such women are therefore the likely target population for prevention of CMV infection during pregnancy in France. PMID:24587077

Broadening the trans-contextual model of motivation: A study with Spanish adolescents.

PubMed

González-Cutre, D; Sicilia, Á; Beas-Jiménez, M; Hagger, M S

2014-08-01

The original trans-contextual model of motivation proposed that autonomy support from teachers develops students' autonomous motivation in physical education (PE), and that autonomous motivation is transferred from PE contexts to physical activity leisure-time contexts, and predicts attitudes, perceived behavioral control and subjective norms, and forming intentions to participate in future physical activity behavior. The purpose of this study was to test an extended trans-contextual model of motivation including autonomy support from peers and parents and basic psychological needs in a Spanish sample. School students (n = 400) aged between 12 and 18 years completed measures of perceived autonomy support from three sources, autonomous motivation and constructs from the theory of planned behavior at three different points in time and in two contexts, PE and leisure-time. A path analysis controlling for past physical activity behavior supported the main postulates of the model. Autonomous motivation in a PE context predicted autonomous motivation in a leisure-time physical activity context, perceived autonomy support from teachers predicted satisfaction of basic psychological needs in PE, and perceived autonomy support from peers and parents predicted need satisfaction in leisure-time. This study provides a cross-cultural replication of the trans-contextual model of motivation and broadens it to encompass basic psychological needs. © 2013 John Wiley & Sons A/S. Published by John Wiley & Sons Ltd.

Comparative analysis of the apparent saturation hysteresis approach and the domain theory of hysteresis in respect of prediction of scanning curves and air entrapment

NASA Astrophysics Data System (ADS)

Beriozkin, A.; Mualem, Y.

2018-05-01

This study theoretically analyzes the concept of apparent saturation hysteresis, combined with the Scott et al. (1983) scaling approach, as suggested by Parker and Lenhard (1987), to account for the effect of air entrapment and release on the soil water hysteresis. We found that the theory of Parker and Lenhard (1987) is comprised of some mutually canceling mathematical operations, and when cleared of the superfluous intermediate calculations, their model reduces to the original Scott et al.'s (1983) scaling method, supplemented with the requirement of closure of scanning loops. Our analysis reveals that actually there is no effect of their technique of accounting for the entrapped air on the final prediction of the effective saturation (or water content) scanning curves. Our consideration indicates that the use of the Land (1968) formula for assessing the amount of entrapped air is in disaccord with the apparent saturation concept as introduced by Parker and Lenhard (1987). In this paper, a proper routine is suggested for predicting hysteretic scanning curves of any order, given the two measured main curves, in the complete hysteretic domain and some verification tests are carried out versus measured results. Accordingly, explicit closed-form formulae for direct prediction (with no need of intermediate calculation) of scanning curves up to the third order are derived to sustain our analysis.

Structure of the active form of human origin recognition complex and its ATPase motor module

DOE Office of Scientific and Technical Information (OSTI.GOV)

Tocilj, Ante; On, Kin Fan; Yuan, Zuanning

Binding of the Origin Recognition Complex (ORC) to origins of replication marks the first step in the initiation of replication of the genome in all eukaryotic cells. Here, we report the structure of the active form of human ORC determined by X-ray crystallography and cryo-electron microscopy. The complex is composed of an ORC1/4/5 motor module lobe in an organization reminiscent of the DNA polymerase clamp loader complexes. A second lobe contains the ORC2/3 subunits. The complex is organized as a double-layered shallow corkscrew, with the AAA+ and AAA+-like domains forming one layer, and the winged-helix domains (WHDs) forming a topmore » layer. CDC6 fits easily between ORC1 and ORC2, completing the ring and the DNA-binding channel, forming an additional ATP hydrolysis site. Analysis of the ATPase activity of the complex provides a basis for understanding ORC activity as well as molecular defects observed in Meier-Gorlin Syndrome mutations.« less

Artemisia umbelliformis Lam. and Génépi Liqueur: Volatile Profile as Diagnostic Marker for Geographic Origin and To Predict Liqueur Safety.

PubMed

Boggia, Lorenzo; Pignata, Giuseppe; Sgorbini, Barbara; Colombo, Maria Laura; Marengo, Arianna; Casale, Manuela; Nicola, Silvana; Bicchi, Carlo; Rubiolo, Patrizia

2017-04-05

Artemisia umbelliformis, commonly known as "white génépi", is characterized by a volatile fraction rich in α- and β-thujones, two monoterpenoids; under European Union (EU) regulations these are limited to 35 mg/L in Artemisia-based beverages because of their recognized activity on the human central nervous system. This study reports the results of an investigation to define the geographical origin and thujone content of individual plants of A. umbelliformis from different geographical sites, cultivated experimentally at a single site, and to predict the thujone content in the resulting liqueurs through their volatile fraction. Headspace solid phase microextraction (HS-SPME) combined with gas chromatography-mass spectrometry (GC-MS) and non-separative HS-SPME-MS were used as analytical platforms to create a database suitable for chemometric description and prediction through linear discriminant analysis (LDA). HS-SPME-MS was applied to shorten analysis time. With both approaches, a diagnostic prediction of (i) plant geographical origin and (ii) thujone content of plant-related liqueurs could be made.

NIR analysis of cellulose and lactose--application to ecstasy tablet analysis.

PubMed

Baer, Ines; Gurny, Robert; Margot, Pierre

2007-04-11

Cellulose and lactose are the most frequently used excipients in illicit ecstasy production. The aim of this project was to use near infrared reflectance spectroscopy (NIRS) for the determination of the different chemical forms of these two substances, as well as for the differentiation of their origin (producer). It was possible to distinguish between the different chemical forms of both compounds, as well as between their origins (producers), although within limits. Furthermore, the possibilities to apply NIR for the analysis of substances such as found in illicit tablets were studied. First, a few cellulose and lactose samples were chosen to make mixtures with amphetamine at three degrees of purity (5, 10 and 15%), in order to study the resulting changes in the spectra as well as to simultaneously quantify amphetamine and identify the excipient. A PLS2 model could be build to predict concentrations and excipient. Secondarily, the technique was to be applied to real ecstasy tablets. About 40 ecstasy seizures were analysed with the aim to determine the excipient and to check them against each other. Identification of the excipients was not always obvious, especially when more than one excipient were present. However, a comparison between tablets appeared to give groups of similar samples. NIR analysis results in spectra representing the tablet blend as a whole taking into account all absorbing compounds. Although NIRS seems to be an appropriate method for ecstasy profiling, little is known about intra- and intervariability of compression batches.

Predicting suicide attempts with the SAD PERSONS scale: a longitudinal analysis.

PubMed

Bolton, James M; Spiwak, Rae; Sareen, Jitender

2012-06-01

The SAD PERSONS scale is a widely used risk assessment tool for suicidal behavior despite a paucity of supporting data. The objective of this study was to examine the ability of the scale in predicting suicide attempts. Participants consisted of consecutive referrals (N=4,019) over 2 years (January 1, 2009 to December 31, 2010) to psychiatric services in the emergency departments of the 2 largest tertiary care hospitals in the province of Manitoba, Canada. SAD PERSONS and Modified SAD PERSONS (MSPS) scale scores were recorded for individuals at their index and all subsequent presentations. The 2 main outcome measures in the study included current suicide attempts (at index presentation) and future suicide attempts (within the next 6 months). The ability of the scales to predict suicide attempts was evaluated with logistic regression, sensitivity and specificity analyses, and receiver operating characteristic curves. 566 people presented with suicide attempts (14.1% of the sample). Both SAD PERSONS and MSPS showed poor predictive ability for future suicide attempts. Compared to low risk scores, high risk baseline scores had low sensitivity (19.6% and 40.0%, respectively) and low positive predictive value (5.3% and 7.4%, respectively). SAD PERSONS did not predict suicide attempts better than chance (area under the curve =0.572; 95% confidence interval [CI], 0.51-0.64; P value nonsignificant). Stepwise regression identified 5 original scale items that accounted for the greatest proportion of future suicide attempt variance. High risk scores using this model had high sensitivity (93.5%) and were associated with a 5-fold higher likelihood of future suicide attempt presentation (odds ratio =5.58; 95% CI, 2.24-13.86; P<.001). In their current form, SAD PERSONS and MSPS do not accurately predict future suicide attempts. © Copyright 2012 Physicians Postgraduate Press, Inc.

Was the Milky Way Bulge Formed from the Buckling Disk Instability, Hierarchical Collapse, Accretion of Clumps, or All of the Above?

NASA Astrophysics Data System (ADS)

Nataf, David M.

2017-09-01

The assembly of the Milky Way bulge is an old topic in astronomy, one now in a period of renewed and rapid development. That is due to tremendous advances in observations of bulge stars, motivating observations of both local and high-redshift galaxies, and increasingly sophisticated simulations. The dominant scenario for bulge formation is that of the Milky Way as a nearly pure disk galaxy, with the inner disk having formed a bar and buckled. This can potentially explain virtually all bulge stars with [Fe/H] ≳ -1.0, which comprise 95% of the stellar population. The evidence is the incredible success in N-body models of this type in making non-trivial, non-generic predictions, such as the rotation curve and velocity dispersion measured from radial velocities, and the spatial morphologies of the peanut/X-shape and the long bar. The classical bulge scenario, whereby the bulge formed from early dissipative collapse and mergers, remains viable for stars with [Fe/H] ≲ -1.0 and potentially a minority of the other stars. A classical bulge is expected from Λ-CDM cosmological simulations, can accentuate the properties of an existing bar in a hybrid system, and is most consistent with the bulge abundance trends such as [Mg/Fe], which are elevated relative to both the thin and thick disks. Finally, the clumpy-galaxy scenario is considered, as it is the correct description of most Milky Way precursors given observations of high-redshift galaxies. Simulations predict that these star-forming clumps will sometimes migrate to the centres of galaxies where they may form a bulge, and galaxies often include a bulge clump as well. They will possibly form a bar with properties consistent with those of the Milky Way, such as the exponential profile and metallicity gradient. Given the relative successes of these scenarios, the Milky Way bulge is plausibly of composite origin, with a classical bulge and/or inner halo numerically dominant for stars with [Fe/H] ≲ -1.0, a buckling thick disk for stars with - 1.0 ≲ [Fe/H

Salt or ice diapirism origin for the honeycomb terrain in Hellas basin, Mars?: Implications for the early martian climate

NASA Astrophysics Data System (ADS)

Weiss, David K.; Head, James W.

2017-03-01

The "honeycomb" terrain is a Noachian-aged cluster of ∼7 km wide linear cell-like depressions located on the northwestern floor of Hellas basin, Mars. A variety of origins have been proposed for the honeycomb terrain, including deformation rings of subglacial sediment, frozen convection cells from a Hellas impact melt sheet, a swarm of igneous batholiths, salt diapirism, and ice diapirism. Recent work has shown that the salt or ice diapirism scenarios appear to be most consistent with the morphology and morphometry of the honeycomb terrain. The salt and ice diapirism scenarios have different implications for the ancient martian climate and hydrological cycle, and so distinguishing between the two scenarios is critical. In this study, we specifically test whether the honeycomb terrain is consistent with a salt or ice diapir origin. We use thermal modeling to assess the stability limits on the thickness of an ice or salt diapir-forming layer at depth within the Hellas basin. We also apply analytical models for diapir formation to evaluate the predicted diapir wavelengths in order to compare with observations. Ice diapirism is generally predicted to reproduce the observed honeycomb wavelengths for ∼100 m to ∼1 km thick ice deposits. Gypsum and kieserite diapirism is generally predicted to reproduce the observed honeycomb wavelengths for ≥ 600-1000 m thick salt deposits, but only with a basaltic overburden. Halite diapirism generally requires approx. ≥ 1 km thick halite deposits in order to reproduce the observed honeycomb wavelengths. Hellas basin is a distinctive environment for diapirism on Mars due to its thin crust (which reduces surface heat flux), low elevation (which allows Hellas to act as a water/ice/sediment sink and increases the surface temperature), and location within the southern highlands (which may provide proximity to inflowing saline water or glacial ice). The plausibility of an ice diapir mechanism generally requires temperatures ≤ 250 K within Hellas in order to reproduce the observed diapir wavelength. Conversely, the viability of the salt diapir mechanism requires sufficiently thick evaporite deposits to accumulate in Hellas (generally ≃1-3 km), which requires the emplacement and evaporation within Hellas of a 14-2045 m global equivalent layer (GEL) of saline water (∼2 × 106 km3 to ∼3 × 108 km3). On the basis of our analysis, we conclude that ice diapirism is more likely due to the thin deposits (∼0.1-1 km thick) and low water volumes required (only 0.3-24 m GEL water), and the potential for either glacial deposits or a frozen ocean to supply the necessary ice. Salt diapirism requires thick evaporite deposits and high water volumes by comparison, and thus appears less likely. Deformation of subglacial sediment: The honeycomb terrain has been proposed to be the imprints of grounded icebergs (comparable to terrestrial wallow pits, which form when an iceberg displaces/deforms the underlying sediment; e.g., Bigg, 2016; Moore and Wilhelms, 2001). Bernhardt et al. (2016a) find this origin unlikely due to the wide distribution of sizes expected and smaller dimensions (widths less than ∼100 m, depths less than 25 m) of these features compared to the relatively consistent (and larger) dimensions of the honeycomb cells. Thermokarst origin:Bernhardt et al. (2016a) explored a thermokarst origin for the honeycomb terrain, wherein loss of pore- or massive-ice in the subsurface by melting or sublimation generates shallow scallop-shaped depressions (which frequently overlap). While the widths of thermokarst features (up to ∼15 km in diameter; e.g., Pewe and Journaux, 1983) appear to be consistent with the cells of the honeycomb terrain, Bernhardt et al. (2016a) do not favor a thermokarst origin based on the shallow depths (few tens of meters) of thermokarst holes and lack of overlap observed for the cells within the honeycomb terrain. Impact melt convection has been proposed to form the honeycomb terrain (Mangold and Allemand, 2003; Kite et al., 2009), wherein convection cells in an immediately post-impact Hellas basin impact melt sea formed and produced the honeycomb terrain when the convection cells cooled and froze. Bernhardt et al. (2016a) find this hypothesis unlikely because thick melt sheets are predicted to form a conductive lid that would prevent the observation of frozen convection cells at the surface (e.g., Cassanelli and Head, 2016a). Bernhardt et al. (2016a) also point out that preservation of convection patterns in impact melt is unlikely to occur because convection ceases before a melt completely solidifies (e.g., Cassanelli and Head, 2016a). Furthermore, no cell-like features have been observed in the melt deposits of comparably large lunar impact basins (e.g., Bernhardt et al., 2016a; Vaughan et al., 2013). Igneous diapirism has been proposed to form the honeycomb terrain (Mangold and Allemand, 2003), wherein swarms of batholiths are intruded into the martian crust and are later exposed at the surface by crustal uplift and erosion. This hypothesis is not favored due to the lack of associated tectonic features in Hellas (Diot et al., 2016), and the observation by Bernhardt et al. (2016a) that terrestrial batholith swarms with pronounced topographic surface expressions have not been observed to occur in such regular dense assemblages. Salt diapirism has been previously explored (but not favored) as the origin for the honeycomb terrain (Mangold and Allemand, 2003; Kite et al., 2009; Diot et al., 2016). Although the dimensions and morphology of the honeycomb terrain are remarkably similar to examples of terrestrial salt diapirism (Fig. 1D and E) (e.g., see Fig. 9 in Bernhardt et al., 2016a and Fig. 8 in Fernandez and Kaus, 2015), these investigators suggested that the lack of brittle deformation features and the large volumes of water required to emplace the evaporitic deposits make a salt diapirism origin unlikely. Diot et al. (2016) noted, however, that brittle deformation features are not expected during "passive" downbuilding of diapirs, wherein diapirs propagate upwards at the same rate as they are buried by sediment (Jackson et al., 1994), and Bernhardt et al. (2016a) note that some terrestrial salt diapirism is associated with more ductile, rather than brittle surface deformation, and so the lack of brittle deformation features may not explicitly preclude a salt diapir origin. Bernhardt et al. (2016a) further suggest that the volume of water necessary to produce the thick salt deposits may be as low as a ∼3.5 m global equivalent layer (GEL) of water (∼506 000 km3), assuming fully saturated saline water, and that such a water volume could have been present and recycled throughout the Noachian period (e.g., Rosenberg and Head, 2015). Bernhardt et al. (2016a) conclude that a salt diapir origin for the honeycomb terrain remains a viable candidate formation hypothesis. They performed a preliminary assessment of the diapir-forming layer thicknesses required to produce the observed diapir wavelengths and found that a salt layer must be at least ∼2 km thick and superposed by an overburden between ∼2 and ∼4 km thick to produce the observed diapir wavelengths.We also note that the elongate morphology of the honeycomb terrain (Fig. 1C) is consistent with a diapir origin. Terrestrial salt diapirs are commonly elongated (Fails et al., 1995, pp. 27; Hudec and Jackson, 2007). Elongation can be caused by (1) the local stress field generated by pre-existing faults, (2) a specific tectonic regime, (3) underlying bed slope, or (4) salt thickness variations (Jackson and Talbot, 1986; Harding and Huuse, 2015), or alternatively (5) by variations in the sedimentation rate forming the overlying layer (Fernandez and Kaus, 2015). Ice diapirism:Diot et al. (2016) and Bernhardt et al. (2016a) assessed whether the honeycomb terrain could alternatively be formed by ice diapirism. While not observed on Earth (likely due to lack of ice confinement; Kite et al., 2009), ice diapirism has been interpreted to have occurred on Europa (Pappalardo et al., 1998; Rathbun et al., 1998; Pappalardo and Barr, 2004) and Triton (Schenk and Jackson, 1993), and could plausibly occur under martian conditions (Brand et al., 2008; Kite et al., 2009). Bernhardt et al. (2016a) suggested that an ice diapirism mechanism would require an ice layer ∼ 1 km thick superposed by overburden deposits up to ∼1 km thick in order to produce diapirism with the observed cell wavelength, on the basis of the reduced density of ice compared with salt (Brand et al., 2008). Bernhardt et al. (2016a) then assessed the viability of ice diapirism by determining whether sufficiently thick layers of ice are thermally stable in the martian subsurface. These authors concluded that an ice diapir-forming layer may be stable to depths up to ∼2 km in the Hellas basin subsurface, and that ice diapirism is thus a viable candidate process to form the honeycomb terrain. In summary, Bernhardt et al. (2016a) concluded that the honeycomb terrain in Hellas may be plausibly formed by either salt or ice diapirism, but they were unable to distinguish between the two scenarios. The salt diapirism hypothesis requires a climate with either temporary or prolonged warm conditions, and large volumes of saline water to flow into Hellas and then evaporate or freeze. The ice diapirism scenario, on the other hand, requires either a predominantly cold climate with intermittent warming periods to produce liquid water in Hellas (which would later freeze), or alternatively, a cold climate with a source of glacial ice to form massive ice to be buried and then eventually form the diapirs. The distinction between salt and ice diapirism in Hellas basin is important because all three origins have different (but major) implications for the ancient martian climate and hydrological cycle. In order to distinguish between a salt or ice diapirism origin for the honeycomb terrain, we expand upon the initial Bernhardt et al. (2016a) analysis by using updated values for (1) the ancient geothermal gradient within the Hellas basin, (2) the overburden thermal conductivity, as well as (3) a wider range of surface temperatures. We also reassess the relationships between diapir wavelength and diapir-forming layer/overburden thicknesses using updated numerical and semi-analytic models (e.g., Fernandez and Kaus, 2015) to provide more specific constraints in combination with thermal modeling. Moreover, we consider the thermal stability of salt layers, due to their similarly low dehydration temperature in some cases (e.g., gypsum has a dehydration temperature of 363 K; Orstroff, 1964; Lager et al., 1984). Here, we reevaluate the thermal stability limits of ice and salt in the martian subsurface (as it relates to diapir cell wavelengths) in order to determine whether salt or ice diapirism is a more plausible candidate formation mechanism for the honeycomb terrain in the Hellas basin.

Origins location of the outflow tract ventricular arrhythmias exhibiting qrS pattern or QS pattern with a notch on the descending limb in lead V1.

PubMed

Lin, Cong; Zheng, Cheng; Zhou, De-Pu; Li, Xiao-Wei; Wu, Shu-Jie; Lin, Jia-Feng

2017-05-15

Ventricular outflow tract(VOT) ventricular arrhythmias(VAs) presenting qrS pattern or QS pattern with a notch on the descending limb in lead V1 were consistently thought of arising from the commissure between left and right coronary cusp (L-RCC) by previous studies. However, we found they could originate from other anatomic structures in VOT. This study aimed to investigate the exact origin of this kind VAs. Forty-nine patients of VOT premature ventricular contrations/ventricular tachycardia(PVCs/VT) with lead V1 presenting qrS pattern or QS pattern with a notch on the descending limb undergoing successful radiofrequency catheter ablation(RFCA) in our center were analyzed. 12-lead electrocardiogram(ECG) of these PVCs/VT were summarized. Among these PVCs/VT, 37 cases exhibited qrS morphology in lead V1, 12 cases presented QS pattern with a notch on the descending limb in the same lead. Based on the successful ablation sites, these PVCs/VT were divided into 2 groups: (1)Right ventricular outflow tract(RVOT) group (26 cases), and (2) Left ventricular outflow tract (LVOT) group(23 cases, 4 cases originating from the left coronary cusp(LCC), 2 from the right coronary cusp(RCC), 16 from the L-RCC, 1 from the area inferior to LCC(ILCC)). The ECG characteristics of each PVCs/VT were analyzed. Among these PVCs/VT, applying the precordial transitional zone index(TZ index) < 0 to predict LVOT origin was demonstrated with sensitivity of 95.65%, specificity of 96.15%, positive predicting value(PPV) of 95.65% and negative predicting value(NPV) of 96.15%. In LVOT group, further applying the r, R, m,or Rs morphology in lead I to predict L-RCC and RCC origin was demonstrated with sensitivity of 94.44%, specificity of 60.00%, PPV of 89.47% and NPV of 75.00%. Ventricular outflow tract PVCs/VT with lead V1 presenting qrS pattern or QS pattern with a notch on descending limb not only arising from L-RCC, but also RVOT, LCC, RCC and ILCC. Combining TZ index and QRS morphology in lead I to predict origin site of these kind VAs is a convenient, simple and reliable method and facilitates the RFCA procedure.

Mud fossils

USGS Publications Warehouse

,

1997-01-01

At the close of the 18th century, the haze of fantasy and mysticism that tended to obscure the true nature of the Earth was being swept away. Careful studies by scientists showed that rocks had diverse origins. Some rock layers, containing clearly identifiable fossil remains of fish and other forms of aquatic animal and plant life, originally formed in the ocean. Other layers, consisting of sand grains winnowed clean by the pounding surf, obviously formed as beach deposits that marked the shorelines of ancient seas.

The Degradational History of Endeavour Crater, Mars

NASA Technical Reports Server (NTRS)

Grant, J. A.; Parker, T. J.; Crumpler, L. S.; Wilson, S. A.; Golombek, M. P.; Mittlefehldt, D. W.

2015-01-01

Endeavour crater (2.28 deg S, 354.77 deg E) is a Noachian-aged 22 km-diameter impact structure of complex morphology in Meridiani Planum. The degradation state of the crater has been studied using Mars Reconnaissance Orbiter and Opportunity rover data. Exposed rim segments rise approximately 10 m to approximately 100 m above the level of the embaying Burns Formation and the crater is 200-500 m deep with the southern interior wall exposing over approximately 300 m relief. Both pre-impact rocks (Matijevic Formation) and Endeavour impact ejecta (Shoemaker Formation) are present at Cape York, but only the Shoemaker crops out (up to approximately 140 m) along the rim segment from Murray Ridge to Cape Tribulation. Study of pristine complex craters Bopolu and Tooting, and morphometry of other martian complex craters, enables us to approximate Endeavour's pristine form. The original rim likely averaged 410 m (+/-)200 m in elevation and a 250-275 m section of ejecta ((+/-)50-60 m) would have composed a significant fraction of the rim height. The original crater depth was likely between 1.5 km and 2.2 km. Comparison between the predicted original and current form of Endeavour suggests approximately 100-200 m rim lowering that removed most ejecta in some locales (e.g., Cape York) while thick sections remain elsewhere (e.g., Cape Tribulation). Almost complete removal of ejecta at Cape York and minimal observable offset across fractures indicates current differences in rim relief are not solely due to original rim relief. Rim segments are embayed by approximately 100-200 m thickness of plains rocks outside the crater, but thicker deposits lie inside the crater. Ventifact textures confirm ongoing eolian erosion with the overall extent difficult to estimate. Analogy with degraded Noachian-aged craters south of Endeavour, however, suggests fluvial erosion dominated rim degradation in the Noachian and was likely followed by approximately 10s of meters modification by alternate processes. Such degradation is consistent with 1) the interpretation of a pediment on the rim flanks of Endeavour, 2) the formation of features such as Marathon Valley, 3) the nearly complete removal of ejecta at Cape York, 4) preservation of a thicker section of ejecta at Cape Tribulation and perhaps, 5) the origin of some gaps in the rim around the crater. A paucity of debris shed from the rim indicates most degradation occurred prior to embayment by the plains rocks.

Hydroformability study of seamless tube using Gurson-Tvergaard-Needleman (GTN) fracture model

NASA Astrophysics Data System (ADS)

Harisankar, K. R.; Omar, A.; Narasimhan, K.

2017-09-01

Tube hydroforming process is an advanced manufacturing process in which tube acting as blank is placed in between the dies and deformed with the help of hydraulic pressure. It has several advantages over conventional stamping process such as high strength to weight ratio, higher reliability, less tooling cost etc. Fracture surface investigation of tube hydroformed samples reveal dimple formation in the form of void coalescence which is a characteristic feature of ductile fracture. Hence, in order to accurately predict the limiting strains at fracture it is important to model the process using ductile damage criteria. Fracture criteria are broadly classified into two, microscopic and macroscopic. In the present work Gurson-Tvergaard-Neeedleman (GTN) model, which is a microscopic based ductile damage criteria, was used for predicting the limiting strains at fracture for seamless steel tubes and implemented in explicit finite element software, ABAQUS, for variety of strain path and boundary conditions to obtain fracture based forming limit diagram. The original void porosity, the critical porosity and fracture porosity of the Gurson-Tvergaard-Needleman model were determined by image analysis of scanning electron micrographs of the specimen at different testing conditions of the uniaxial tensile test. The other parameters of the model were determined by using inverse approach combined with uniaxial tensile test and simulation. Predicted FLD is found to be in good agreement with the experimental FLD. Furthermore, numerical simulation based parametric study was carried out to understand the impact of various GTN parameters on different aspects of formability parameters such as bursting pressure, bulge height, principal strains and strain path to develop the understanding of deformation and fracture behaviour at the micro-level during tube hydroforming process.

Self organising hypothesis networks: a new approach for representing and structuring SAR knowledge

PubMed Central

2014-01-01

Background Combining different sources of knowledge to build improved structure activity relationship models is not easy owing to the variety of knowledge formats and the absence of a common framework to interoperate between learning techniques. Most of the current approaches address this problem by using consensus models that operate at the prediction level. We explore the possibility to directly combine these sources at the knowledge level, with the aim to harvest potentially increased synergy at an earlier stage. Our goal is to design a general methodology to facilitate knowledge discovery and produce accurate and interpretable models. Results To combine models at the knowledge level, we propose to decouple the learning phase from the knowledge application phase using a pivot representation (lingua franca) based on the concept of hypothesis. A hypothesis is a simple and interpretable knowledge unit. Regardless of its origin, knowledge is broken down into a collection of hypotheses. These hypotheses are subsequently organised into hierarchical network. This unification permits to combine different sources of knowledge into a common formalised framework. The approach allows us to create a synergistic system between different forms of knowledge and new algorithms can be applied to leverage this unified model. This first article focuses on the general principle of the Self Organising Hypothesis Network (SOHN) approach in the context of binary classification problems along with an illustrative application to the prediction of mutagenicity. Conclusion It is possible to represent knowledge in the unified form of a hypothesis network allowing interpretable predictions with performances comparable to mainstream machine learning techniques. This new approach offers the potential to combine knowledge from different sources into a common framework in which high level reasoning and meta-learning can be applied; these latter perspectives will be explored in future work. PMID:24959206

Laboratory observations of artificial sand and oil agglomerates

USGS Publications Warehouse

Jenkins, Robert L.; Dalyander, P. Soupy; Penko, Allison; Long, Joseph W.

2018-04-27

Sand and oil agglomerates (SOAs) form when weathered oil reaches the surf zone and combines with suspended sediments. The presence of large SOAs in the form of thick mats (up to 10 centimeters [cm] in height and up to 10 square meters [m2] in area) and smaller SOAs, sometimes referred to as surface residual balls (SRBs), may lead to the re-oiling of beaches previously affected by an oil spill. A limited number of numerical modeling and field studies exist on the transport and dynamics of centimeter-scale SOAs and their interaction with the sea floor. Numerical models used to study SOAs have relied on shear-stress formulations to predict incipient motion. However, uncertainty exists as to the accuracy of applying these formulations, originally developed for sand grains in a uniformly sorted sediment bed, to larger, nonspherical SOAs. In the current effort, artificial sand and oil agglomerates (aSOAs) created with the size, density, and shape characteristics of SOAs were studied in a small-oscillatory flow tunnel. These experiments expanded the available data on SOA motion and interaction with the sea floor and were used to examine the applicability of shear-stress formulations to predict SOA mobility. Data collected during these two sets of experiments, including photographs, video, and flow velocity, are presented in this report, along with an analysis of shear-stress-based formulations for incipient motion. The results showed that shear-stress thresholds for typical quartz sand predicted the incipient motion of aSOAs with 0.5–1.0-cm diameters, but were inaccurate for aSOAs with larger diameters (>2.5 cm). This finding implies that modified parameterizations of incipient motion may be necessary under certain combinations of aSOA characteristics and environmental conditions.

Taxonomy and phylogeny of two species of the genus Deviata (Protista, Ciliophora) from China, with description of a new soil form, Deviata parabacilliformis sp. nov.

PubMed

Li, Fengchao; Lv, Zhao; Yi, Zhenzhen; Al-Farraj, Saleh A; Al-Rasheid, Khaled A S; Shao, Chen

2014-11-01

The morphology and morphogenesis of a soil hypotrichous ciliate, Deviata parabacilliformis sp. nov., isolated from northern China, were investigated. D. parabacilliformis measures about 75-210 × 25-60 µm in vivo, with an elongate and flexible body. It possesses one right marginal row, two to four left marginal rows and three dorsal kineties. The main morphogenetic features of D. parabacilliformis are: (i) the oral primordium originates de novo; (ii) anlage IV of the opisthe originates from parental frontoventral row V, anlage V originates de novo, and anlage VI forms from frontoventral row VI; and (iii) anlage I of the proter originates from the anterior portion of the parental paroral, anlage II originates from the buccal cirrus, anlage III originates from the parabuccal cirri, anlage IV originates from parental frontoventral row IV and anlage V forms from the anterior of parental frontoventral row VI. The morphology of an edaphic population of another species of the genus Deviata, Deviata bacilliformis (Gelei 1954) Eigner 1995, was also investigated. This work also provides the first record of SSU rRNA gene sequences for species of the genus Deviata. Molecular phylogenetic analysis suggests that Deviata is not monophyletic, and its position is poorly resolved due to weak phylogenetic signal of the 18S marker in the Stichotrichida. © 2014 IUMS.

"Non-equilibrium" block copolymer micelles with glassy cores: a predictive approach based on theory of equilibrium micelles.

PubMed

Nagarajan, Ramanathan

2015-07-01

Micelles generated in water from most amphiphilic block copolymers are widely recognized to be non-equilibrium structures. Typically, the micelles are prepared by a kinetic process, first allowing molecular scale dissolution of the block copolymer in a common solvent that likes both the blocks and then gradually replacing the common solvent by water to promote the hydrophobic blocks to aggregate and create the micelles. The non-equilibrium nature of the micelle originates from the fact that dynamic exchange between the block copolymer molecules in the micelle and the singly dispersed block copolymer molecules in water is suppressed, because of the glassy nature of the core forming polymer block and/or its very large hydrophobicity. Although most amphiphilic block copolymers generate such non-equilibrium micelles, no theoretical approach to a priori predict the micelle characteristics currently exists. In this work, we propose a predictive approach for non-equilibrium micelles with glassy cores by applying the equilibrium theory of micelles in two steps. In the first, we calculate the properties of micelles formed in the mixed solvent while true equilibrium prevails, until the micelle core becomes glassy. In the second step, we freeze the micelle aggregation number at this glassy state and calculate the corona dimension from the equilibrium theory of micelles. The condition when the micelle core becomes glassy is independently determined from a statistical thermodynamic treatment of diluent effect on polymer glass transition temperature. The predictions based on this "non-equilibrium" model compare reasonably well with experimental data for polystyrene-polyethylene oxide diblock copolymer, which is the most extensively studied system in the literature. In contrast, the application of the equilibrium model to describe such a system significantly overpredicts the micelle core and corona dimensions and the aggregation number. The non-equilibrium model suggests ways to obtain different micelle sizes for the same block copolymer, by the choices we can make of the common solvent and the mode of solvent substitution. Published by Elsevier Inc.

Clinical Decision Support for a Multicenter Trial of Pediatric Head Trauma

PubMed Central

Swietlik, Marguerite; Deakyne, Sara; Hoffman, Jeffrey M.; Grundmeier, Robert W.; Paterno, Marilyn D.; Rocha, Beatriz H.; Schaeffer, Molly H; Pabbathi, Deepika; Alessandrini, Evaline; Ballard, Dustin; Goldberg, Howard S.; Kuppermann, Nathan; Dayan, Peter S.

2016-01-01

Summary Introduction For children who present to emergency departments (EDs) due to blunt head trauma, ED clinicians must decide who requires computed tomography (CT) scanning to evaluate for traumatic brain injury (TBI). The Pediatric Emergency Care Applied Research Network (PECARN) derived and validated two age-based prediction rules to identify children at very low risk of clinically-important traumatic brain injuries (ciTBIs) who do not typically require CT scans. In this case report, we describe the strategy used to implement the PECARN TBI prediction rules via electronic health record (EHR) clinical decision support (CDS) as the intervention in a multicenter clinical trial. Methods Thirteen EDs participated in this trial. The 10 sites receiving the CDS intervention used the Epic® EHR. All sites implementing EHR-based CDS built the rules by using the vendor’s CDS engine. Based on a sociotechnical analysis, we designed the CDS so that recommendations could be displayed immediately after any provider entered prediction rule data. One central site developed and tested the intervention package to be exported to other sites. The intervention package included a clinical trial alert, an electronic data collection form, the CDS rules and the format for recommendations. Results The original PECARN head trauma prediction rules were derived from physician documentation while this pragmatic trial led each site to customize their workflows and allow multiple different providers to complete the head trauma assessments. These differences in workflows led to varying completion rates across sites as well as differences in the types of providers completing the electronic data form. Site variation in internal change management processes made it challenging to maintain the same rigor across all sites. This led to downstream effects when data reports were developed. Conclusions The process of a centralized build and export of a CDS system in one commercial EHR system successfully supported a multicenter clinical trial. PMID:27437059

Cascaded bidirectional recurrent neural networks for protein secondary structure prediction.

PubMed

Chen, Jinmiao; Chaudhari, Narendra

2007-01-01

Protein secondary structure (PSS) prediction is an important topic in bioinformatics. Our study on a large set of non-homologous proteins shows that long-range interactions commonly exist and negatively affect PSS prediction. Besides, we also reveal strong correlations between secondary structure (SS) elements. In order to take into account the long-range interactions and SS-SS correlations, we propose a novel prediction system based on cascaded bidirectional recurrent neural network (BRNN). We compare the cascaded BRNN against another two BRNN architectures, namely the original BRNN architecture used for speech recognition as well as Pollastri's BRNN that was proposed for PSS prediction. Our cascaded BRNN achieves an overall three state accuracy Q3 of 74.38\\%, and reaches a high Segment OVerlap (SOV) of 66.0455. It outperforms the original BRNN and Pollastri's BRNN in both Q3 and SOV. Specifically, it improves the SOV score by 4-6%.

Familism Values, Family Time, and Mexican-Origin Young Adults’ Depressive Symptoms

PubMed Central

Zeiders, Katharine H.; Updegraff, Kimberly A.; Umaña-Taylor, Adriana J.; McHale, Susan M.; Padilla, Jenny

2015-01-01

Using longitudinal data across eight years, this study examined how parents’ familism values in early adolescence predicted youths’ depressive symptoms in young adulthood via youths’ familism values and family time. We examined these processes among 246 Mexican-origin families using interview and phone-diary data. Findings revealed that fathers’ familism values predicted male and female youths’ familism values in middle adolescence. For female youth only, fathers’ familism values also predicted youths’ family time in late adolescence. The link between family time and young adults’ depressive symptoms depended on parental acceptance and adolescent gender: Among female and male youth, family time predicted fewer depressive symptoms, but only when paternal acceptance was high. For female adolescents only, family time predicted fewer depressive symptoms when maternal acceptance was high but more depressive symptoms when maternal acceptance was low. Findings highlight family dynamics as the mechanisms through which familism values have implications for youths’ adjustment. PMID:26778855

Origins and evolution of viruses of eukaryotes: The ultimate modularity

DOE Office of Scientific and Technical Information (OSTI.GOV)

Koonin, Eugene V., E-mail: koonin@ncbi.nlm.nih.gov; Dolja, Valerian V., E-mail: doljav@science.oregonstate.edu; Krupovic, Mart, E-mail: krupovic@pasteur.fr

2015-05-15

Viruses and other selfish genetic elements are dominant entities in the biosphere, with respect to both physical abundance and genetic diversity. Various selfish elements parasitize on all cellular life forms. The relative abundances of different classes of viruses are dramatically different between prokaryotes and eukaryotes. In prokaryotes, the great majority of viruses possess double-stranded (ds) DNA genomes, with a substantial minority of single-stranded (ss) DNA viruses and only limited presence of RNA viruses. In contrast, in eukaryotes, RNA viruses account for the majority of the virome diversity although ssDNA and dsDNA viruses are common as well. Phylogenomic analysis yields tangiblemore » clues for the origins of major classes of eukaryotic viruses and in particular their likely roots in prokaryotes. Specifically, the ancestral genome of positive-strand RNA viruses of eukaryotes might have been assembled de novo from genes derived from prokaryotic retroelements and bacteria although a primordial origin of this class of viruses cannot be ruled out. Different groups of double-stranded RNA viruses derive either from dsRNA bacteriophages or from positive-strand RNA viruses. The eukaryotic ssDNA viruses apparently evolved via a fusion of genes from prokaryotic rolling circle-replicating plasmids and positive-strand RNA viruses. Different families of eukaryotic dsDNA viruses appear to have originated from specific groups of bacteriophages on at least two independent occasions. Polintons, the largest known eukaryotic transposons, predicted to also form virus particles, most likely, were the evolutionary intermediates between bacterial tectiviruses and several groups of eukaryotic dsDNA viruses including the proposed order “Megavirales” that unites diverse families of large and giant viruses. Strikingly, evolution of all classes of eukaryotic viruses appears to have involved fusion between structural and replicative gene modules derived from different sources along with additional acquisitions of diverse genes. - Highlights: • Eukaryotic virome dramatically differs from the viromes of bacteria and archaea. • Eukaryotic virome is dominated by RNA viruses and retroelements. • All classes of eukaryotic viruses evolved by gene module exchange. • Prokaryotic ancestry is traceable for core gene modules of most eukaryotic viruses. • Evolutionary histories of viruses and transposable elements are tightly linked.« less

Origin and evolution of the integumentary skeleton in non-tetrapod vertebrates

PubMed Central

Sire, Jean-Yves; Donoghue, Philip C J; Vickaryous, Matthews K

2009-01-01

Most non-tetrapod vertebrates develop mineralized extra-oral elements within the integument. Known collectively as the integumentary skeleton, these elements represent the structurally diverse skin-bound contribution to the dermal skeleton. In this review we begin by summarizing what is known about the histological diversity of the four main groups of integumentary skeletal tissues: hypermineralized (capping) tissues; dentine; plywood-like tissues; and bone. For most modern taxa, the integumentary skeleton has undergone widespread reduction and modification often rendering the homology and relationships of these elements confused and uncertain. Fundamentally, however, all integumentary skeletal elements are derived (alone or in combination) from only two types of cell condensations: odontogenic and osteogenic condensations. We review the origin and diversification of the integumentary skeleton in aquatic non-tetrapods (including stem gnathostomes), focusing on tissues derived from odontogenic (hypermineralized tissues, dentines and elasmodine) and osteogenic (bone tissues) cell condensations. The novelty of our new scenario of integumentary skeletal evolution resides in the demonstration that elasmodine, the main component of elasmoid scales, is odontogenic in origin. Based on available data we propose that elasmodine is a form of lamellar dentine. Given its widespread distribution in non-tetrapod lineages we further propose that elasmodine is a very ancient tissue in vertebrates and predict that it will be found in ancestral rhombic scales and cosmoid scales. PMID:19422423

A method for inferring regional origins of neurodegeneration.

PubMed

Torok, Justin; Maia, Pedro D; Powell, Fon; Pandya, Sneha; Raj, Ashish

2018-02-02

Alzheimer's disease, the most common form of dementia, is characterized by the emergence and spread of senile plaques and neurofibrillary tangles, causing widespread neurodegeneration. Though the progression of Alzheimer's disease is considered to be stereotyped, the significant variability within clinical populations obscures this interpretation on the individual level. Of particular clinical importance is understanding where exactly pathology, e.g. tau, emerges in each patient and how the incipient atrophy pattern relates to future spread of disease. Here we demonstrate a newly developed graph theoretical method of inferring prior disease states in patients with Alzheimer's disease and mild cognitive impairment using an established network diffusion model and an L1-penalized optimization algorithm. Although the 'seeds' of origin using our inference method successfully reproduce known trends in Alzheimer's disease staging on a population level, we observed that the high degree of heterogeneity between patients at baseline is also reflected in their seeds. Additionally, the individualized seeds are significantly more predictive of future atrophy than a single seed placed at the hippocampus. Our findings illustrate that understanding where disease originates in individuals is critical to determining how it progresses and that our method allows us to infer early stages of disease from atrophy patterns observed at diagnosis. © The Author(s) (2018). Published by Oxford University Press on behalf of the Guarantors of Brain. All rights reserved. For Permissions, please email: journals.permissions@oup.com.

Data Analysis Techniques for Ligo Detector Characterization

NASA Astrophysics Data System (ADS)

Valdes Sanchez, Guillermo A.

Gravitational-wave astronomy is a branch of astronomy which aims to use gravitational waves to collect observational data about astronomical objects and events such as black holes, neutron stars, supernovae, and processes including those of the early universe shortly after the Big Bang. Einstein first predicted gravitational waves in the early century XX, but it was not until Septem- ber 14, 2015, that the Laser Interferometer Gravitational-Wave Observatory (LIGO) directly ob- served the first gravitational waves in history. LIGO consists of two twin detectors, one in Livingston, Louisiana and another in Hanford, Washington. Instrumental and sporadic noises limit the sensitivity of the detectors. Scientists conduct Data Quality studies to distinguish a gravitational-wave signal from the noise, and new techniques are continuously developed to identify, mitigate, and veto unwanted noise. This work presents the application of data analysis techniques, such as Hilbert-Huang trans- form (HHT) and Kalman filtering (KF), in LIGO detector characterization. We investigated the application of HHT to characterize the gravitational-wave signal of the first detection, we also demonstrated the functionality of HHT identifying noise originated from light being scattered by perturbed surfaces, and we estimated thermo-optical aberration using KF. We put particular attention to the scattering origin application, for which a tool was developed to identify disturbed surfaces originating scattering noise. The results reduced considerably the time to search for the scattering surface and helped LIGO commissioners to mitigate the noise.

Genomic potential hypothesis of evolution: a concept of biogenesis in habitable spaces of the universe.

PubMed

Schwabe, Christian

2002-11-01

The new hypothesis of evolution establishes a contiguity of life sciences with cosmology, physics, and chemistry, and provides a basis for the search for life on other planets. Chemistry is the sole driving force of the assembly of life, under the subtle guidance exerted by bonding orbital geometry. That phenomenon leads to multiple origins that function on the same principles but are different to the extent that their nucleic acid core varies. Thus, thoughts about the origins of life and the development of complexity have been transferred from the chance orientation of the past to the realm of atomic structures, which are subject to the laws of thermodynamics and kinetics. Evolution is a legitimate subject of basic science, and the complexity of life will submit to the laws of chemistry and physics as the problem is viewed from a new perspective. The paradigm connects life to the big events that formed every sphere of our living space and that keeps conditions fine-tuned for life to persist, perhaps a billion years or more. The "genomic potential" hypothesis leads to the prediction that life like ours is likely to exist in galaxies that are as distant from the origin of the universe as the Milky Way, and that the habitable zone of our galaxy harbors other living planets as well. Copyright 2002 Wiley-Liss, Inc.

Microgravity Propellant Tank Geyser Analysis and Prediction

NASA Technical Reports Server (NTRS)

Thornton, Randall J.; Hochstein, John I.; Turner, James E. (Technical Monitor)

2001-01-01

An established correlation for geyser height prediction of an axial jet inflow into a microgravity propellant tank was analyzed and an effort to develop an improved correlation was made. The original correlation, developed using data from ethanol flow in small-scale drop tower tests, uses the jet-Weber number and the jet-Bond number to predict geyser height. A new correlation was developed from the same set of experimental data using the jet-Weber number and both the jet-Bond number and tank-Bond number to describe the geyser formation. The resulting correlation produced nearly a 40% reduction in geyser height predictive error compared to the original correlation with experimental data. Two additional tanks were computationally modeled in addition to the small-scale tank used in the drop tower testing. One of these tanks was a 50% enlarged small-scale tank and the other a full-scale 2 m radius tank. Simulations were also run for liquid oxygen and liquid hydrogen. Results indicated that the new correlation outperformed the original correlation in geyser height prediction under most circumstances. The new correlation has also shown a superior ability to recognize the difference between flow patterns II (geyser formation only) and III (pooling at opposite end of tank from the bulk fluid region).

Alternative lengthening of telomeres predicts site of origin in neuroendocrine tumor liver metastases.

PubMed

Dogeas, Epameinondas; Karagkounis, Georgios; Heaphy, Christopher M; Hirose, Kenzo; Pawlik, Timothy M; Wolfgang, Christopher L; Meeker, Alan; Hruban, Ralph H; Cameron, John L; Choti, Michael A

2014-04-01

The determination of the primary tumor origin in patients with neuroendocrine tumor liver metastases (NELM) can pose a considerable management challenge. Recent studies have shown that the alternative lengthening of telomeres (ALT) is prevalent in some human tumors, including pancreatic neuroendocrine tumors (PanNET), and can be useful in predicting tumor biology. In this study, we aimed to evaluate the use of ALT as a biomarker in patients with NELM, in particular to predict the site of origin of metastases. Tissue microarrays (TMAs) were constructed using tumor tissue from NELM patients undergoing liver resection between 1998 and 2010. These included 43 PanNET and 47 gastrointestinal carcinoid tumors. The TMAs were tested for ALT using telomere-specific fluorescent in situ hybridization. The association between ALT positivity and clinicopathologic features and long-term outcomes was investigated. Alternative lengthening of telomeres was positive (ALT+) in 26 (29%) of the 90 tumors included in the TMAs. Pancreatic neuroendocrine tumors were ALT+ in 56% of patients, compared with only 4% ALT+ among gastrointestinal carcinoid tumors (p < 0.001). The specificity of ALT for detecting pancreatic origin was 96% and the positive predictive value was 92%, and sensitivity was 56% and the negative predictive value was 70%. Additionally, ALT was associated with the pattern of metastatic disease: ALT+ NELM were more likely to have oligometastases (p = 0.001) and less likely to be bilateral in distribution (p = 0.05) than were ALT tumors. In addition, ALT+ was associated with improved prognosis in the PanNET patient population. Alternative lengthening of telomeres was found to be a useful biomarker in patients with NELM. This marker can be helpful in guiding therapy by identifying the site of origin in patients in whom the primary site is unknown. Copyright © 2014 American College of Surgeons. Published by Elsevier Inc. All rights reserved.

Psychometric properties of Positive and Negative Affect Schedule (PANAS) original and short forms in an African American community sample.

PubMed

Merz, Erin L; Malcarne, Vanessa L; Roesch, Scott C; Ko, Celine M; Emerson, Marc; Roma, Vincenzo G; Sadler, Georgia Robins

2013-12-01

The Positive and Negative Affect Schedule (PANAS) has been widely used as a self-report measure of affect in community and clinical contexts. However, evaluations of the psychometric properties of PANAS scores have been limited in diverse ethnic groups. Several short forms of the PANAS have also been proposed, but very little is known about the psychometric properties of these versions. The present study investigated the psychometric properties, including the factor structure of the original PANAS and two short forms in an African American community sample (N=239). Descriptive, internal consistency reliability, factorial validity, and measurement invariance analyses were conducted. All PANAS subscales from the original and short forms had adequate internal consistency. For the original PANAS, the model specifying three correlated factors (Positive Affect, Afraid, Upset) with correlated uniquenesses from redundant items provided the best fit to the data. However, the two-factor model (Positive Affect, Negative Affect) with correlated uniquenesses was also supported. For both short forms, the two-factor model with correlated uniquenesses fit the data best. Factors from all forms were generally invariant across age and gender, although there was some minor invariance at the item level. Participants were from a limited geographic area and one ethnic group. Indicators of anxiety, depression, and cultural characteristics were not measured. The factor structure was replicated, suggesting no immediate concerns regarding the valid interpretation of PANAS scores. The results support the reliability and validity of the PANAS and its short forms for use among African Americans. © 2013 Elsevier B.V. All rights reserved.

Identification and application of self-binding zipper-like sequences in SARS-CoV spike protein.

PubMed

Zhang, Si Min; Liao, Ying; Neo, Tuan Ling; Lu, Yanning; Liu, Ding Xiang; Vahlne, Anders; Tam, James P

2018-05-22

Self-binding peptides containing zipper-like sequences, such as the Leu/Ile zipper sequence within the coiled coil regions of proteins and the cross-β spine steric zippers within the amyloid-like fibrils, could bind to the protein-of-origin through homophilic sequence-specific zipper motifs. These self-binding sequences represent opportunities for the development of biochemical tools and/or therapeutics. Here, we report on the identification of a putative self-binding β-zipper-forming peptide within the severe acute respiratory syndrome-associated coronavirus spike (S) protein and its application in viral detection. Peptide array scanning of overlapping peptides covering the entire length of S protein identified 34 putative self-binding peptides of six clusters, five of which contained octapeptide core consensus sequences. The Cluster I consensus octapeptide sequence GINITNFR was predicted by the Eisenberg's 3D profile method to have high amyloid-like fibrillation potential through steric β-zipper formation. Peptide C6 containing the Cluster I consensus sequence was shown to oligomerize and form amyloid-like fibrils. Taking advantage of this, C6 was further applied to detect the S protein expression in vitro by fluorescence staining. Meanwhile, the coiled-coil-forming Leu/Ile heptad repeat sequences within the S protein were under-represented during peptide array scanning, in agreement with that long peptide lengths were required to attain high helix-mediated interaction avidity. The data suggest that short β-zipper-like self-binding peptides within the S protein could be identified through combining the peptide scanning and predictive methods, and could be exploited as biochemical detection reagents for viral infection. Copyright © 2018. Published by Elsevier Ltd.

Determination of geographical origin and icariin content of Herba Epimedii using near infrared spectroscopy and chemometrics

NASA Astrophysics Data System (ADS)

Yang, Yue; Wu, Yongjiang; Li, Weili; Liu, Xuesong; Zheng, Jiyu; Zhang, Wentao; Chen, Yong

2018-02-01

Near infrared (NIR) spectroscopy coupled with chemometrics was used to discriminate the geographical origin of Herba Epimedii in this work. Four different classification models, namely discriminant analysis (DA), back propagation neural network (BPNN), K-nearest neighbor (KNN), and support vector machine (SVM), were constructed, and their performances in terms of recognition accuracy were compared. The results indicated that the SVM model was superior over the other models in the geographical origin identification of Herba Epimedii. The recognition rates of the optimum SVM model were up to 100% for the calibration set and 94.44% for the prediction set, respectively. In addition, the feasibility of NIR spectroscopy with the CARS-PLSR calibration model in prediction of icariin content of Herba Epimedii was also investigated. The determination coefficient (RP2) and root-mean-square error (RMSEP) for prediction set were 0.9269 and 0.0480, respectively. It can be concluded that the NIR spectroscopy technique in combination with chemometrics has great potential in determination of geographical origin and icariin content of Herba Epimedii. This study can provide a valuable reference for rapid quality control of food products.

Performance of the Framingham and SCORE cardiovascular risk prediction functions in a non-diabetic population of a Spanish health care centre: a validation study

PubMed Central

Barroso, Lourdes Cañón; Muro, Eloísa Cruces; Herrera, Natalio Díaz; Ochoa, Gerardo Fernández; Hueros, Juan Ignacio Calvo; Buitrago, Francisco

2010-01-01

Objective To analyse the 10-year performance of the original Framingham coronary risk function and of the SCORE cardiovascular death risk function in a non-diabetic population of 40–65 years of age served by a Spanish healthcare centre. Also, to estimate the percentage of patients who are candidates for antihypertensive and lipid-lowering therapy. Design Longitudinal, observational study of a retrospective cohort followed up for 10 years. Setting Primary care health centre. Patients A total of 608 non-diabetic patients of 40–65 years of age (mean 52.8 years, 56.7% women), without evidence of cardiovascular disease were studied. Main outcome measures Coronary risk at 10 years from the time of their recruitment, using the tables based on the original Framingham function, and of their 10-year risk of fatal cardiovascular disease using the SCORE tables. Results The actual incidence rates of coronary and fatal cardiovascular events were 7.9% and 1.5%, respectively. The original Framingham equation over-predicted risk by 64%, while SCORE function over-predicted risk by 40%, but the SCORE model performed better than the Framingham one for discrimination and calibration statistics. The original Framingham function classified 18.3% of the population as high risk and SCORE 9.2%. The proportions of patients who would be candidates for lipid-lowering therapy were 31.0% and 23.8% according to the original Framingham and SCORE functions, respectively, and 36.8% and 31.2% for antihypertensive therapy. Conclusion The SCORE function showed better values than the original Framingham function for each of the discrimination and calibration statistics. The original Framingham function selected a greater percentage of candidates for antihypertensive and lipid-lowering therapy. PMID:20873973

Words in Context: The Effects of Length, Frequency, and Predictability on Brain Responses During Natural Reading

PubMed Central

Schuster, Sarah; Hawelka, Stefan; Hutzler, Florian; Kronbichler, Martin; Richlan, Fabio

2016-01-01

Word length, frequency, and predictability count among the most influential variables during reading. Their effects are well-documented in eye movement studies, but pertinent evidence from neuroimaging primarily stem from single-word presentations. We investigated the effects of these variables during reading of whole sentences with simultaneous eye-tracking and functional magnetic resonance imaging (fixation-related fMRI). Increasing word length was associated with increasing activation in occipital areas linked to visual analysis. Additionally, length elicited a U-shaped modulation (i.e., least activation for medium-length words) within a brain stem region presumably linked to eye movement control. These effects, however, were diminished when accounting for multiple fixation cases. Increasing frequency was associated with decreasing activation within left inferior frontal, superior parietal, and occipito-temporal regions. The function of the latter region—hosting the putative visual word form area—was originally considered as limited to sublexical processing. An exploratory analysis revealed that increasing predictability was associated with decreasing activation within middle temporal and inferior frontal regions previously implicated in memory access and unification. The findings are discussed with regard to their correspondence with findings from single-word presentations and with regard to neurocognitive models of visual word recognition, semantic processing, and eye movement control during reading. PMID:27365297

An analytical framework to assist decision makers in the use of forest ecosystem model predictions

USGS Publications Warehouse

Larocque, Guy R.; Bhatti, Jagtar S.; Ascough, J.C.; Liu, J.; Luckai, N.; Mailly, D.; Archambault, L.; Gordon, Andrew M.

2011-01-01

The predictions from most forest ecosystem models originate from deterministic simulations. However, few evaluation exercises for model outputs are performed by either model developers or users. This issue has important consequences for decision makers using these models to develop natural resource management policies, as they cannot evaluate the extent to which predictions stemming from the simulation of alternative management scenarios may result in significant environmental or economic differences. Various numerical methods, such as sensitivity/uncertainty analyses, or bootstrap methods, may be used to evaluate models and the errors associated with their outputs. However, the application of each of these methods carries unique challenges which decision makers do not necessarily understand; guidance is required when interpreting the output generated from each model. This paper proposes a decision flow chart in the form of an analytical framework to help decision makers apply, in an orderly fashion, different steps involved in examining the model outputs. The analytical framework is discussed with regard to the definition of problems and objectives and includes the following topics: model selection, identification of alternatives, modelling tasks and selecting alternatives for developing policy or implementing management scenarios. Its application is illustrated using an on-going exercise in developing silvicultural guidelines for a forest management enterprise in Ontario, Canada.

Discrimination of fish populations using parasites: Random Forests on a 'predictable' host-parasite system.

PubMed

Pérez-Del-Olmo, A; Montero, F E; Fernández, M; Barrett, J; Raga, J A; Kostadinova, A

2010-10-01

We address the effect of spatial scale and temporal variation on model generality when forming predictive models for fish assignment using a new data mining approach, Random Forests (RF), to variable biological markers (parasite community data). Models were implemented for a fish host-parasite system sampled along the Mediterranean and Atlantic coasts of Spain and were validated using independent datasets. We considered 2 basic classification problems in evaluating the importance of variations in parasite infracommunities for assignment of individual fish to their populations of origin: multiclass (2-5 population models, using 2 seasonal replicates from each of the populations) and 2-class task (using 4 seasonal replicates from 1 Atlantic and 1 Mediterranean population each). The main results are that (i) RF are well suited for multiclass population assignment using parasite communities in non-migratory fish; (ii) RF provide an efficient means for model cross-validation on the baseline data and this allows sample size limitations in parasite tag studies to be tackled effectively; (iii) the performance of RF is dependent on the complexity and spatial extent/configuration of the problem; and (iv) the development of predictive models is strongly influenced by seasonal change and this stresses the importance of both temporal replication and model validation in parasite tagging studies.

Predicting solvatochromic shifts and colours of a solvated organic dye: The example of nile red

NASA Astrophysics Data System (ADS)

Zuehlsdorff, T. J.; Haynes, P. D.; Payne, M. C.; Hine, N. D. M.

2017-03-01

The solvatochromic shift, as well as the change in colour of the simple organic dye nile red, is studied in two polar and two non-polar solvents in the context of large-scale time-dependent density-functional theory (TDDFT) calculations treating large parts of the solvent environment from first principles. We show that an explicit solvent representation is vital to resolve absorption peak shifts between nile red in n-hexane and toluene, as well as acetone and ethanol. The origin of the failure of implicit solvent models for these solvents is identified as being due to the strong solute-solvent interactions in form of π-stacking and hydrogen bonding in the case of toluene and ethanol. We furthermore demonstrate that the failures of the computationally inexpensive Perdew-Burke-Ernzerhof (PBE) functional in describing some features of the excited state potential energy surface of the S1 state of nile red can be corrected for in a straightforward fashion, relying only on a small number of calculations making use of more sophisticated range-separated hybrid functionals. The resulting solvatochromic shifts and predicted colours are in excellent agreement with experiment, showing the computational approach outlined in this work to yield very robust predictions of optical properties of dyes in solution.

Bimanual coordination positively predicts episodic memory: A combined behavioral and MRI investigation.

PubMed

Lyle, Keith B; Dombroski, Brynn A; Faul, Leonard; Hopkins, Robin F; Naaz, Farah; Switala, Andrew E; Depue, Brendan E

2017-11-01

Some people remember events more completely and accurately than other people, but the origins of individual differences in episodic memory are poorly understood. One way to advance understanding is by identifying characteristics of individuals that reliably covary with memory performance. Recent research suggests motor behavior is related to memory performance, with individuals who consistently use a single preferred hand for unimanual actions performing worse than individuals who make greater use of both hands. This research has relied on self-reports of behavior. It is unknown whether objective measures of motor behavior also predict memory performance. Here, we tested the predictive power of bimanual coordination, an important form of manual dexterity. Bimanual coordination, as measured objectively on the Purdue Pegboard Test, was positively related to correct recall on the California Verbal Learning Test-II and negatively related to false recall. Furthermore, MRI data revealed that cortical surface area in right lateral prefrontal regions was positively related to correct recall. In one of these regions, cortical thickness was negatively related to bimanual coordination. These results suggest that individual differences in episodic memory may partially reflect morphological variation in right lateral prefrontal cortex and suggest a relationship between neural correlates of episodic memory and motor behavior. Copyright © 2017 Elsevier Inc. All rights reserved.

Continuity and change in social and physical aggression from middle childhood through early adolescence.

PubMed

Underwood, Marion K; Beron, Kurt J; Rosen, Lisa H

2009-01-01

For a sample followed from age 9-13 (N=281), this investigation examined developmental trajectories for social and physical aggression as measured by teacher ratings. Trajectories for both forms of aggression were estimated first separately, then jointly. Mean levels of both social and physical aggression decreased over time for the overall sample, but with high variability of individual trajectories. Subgroups followed high trajectories for both social and physical aggression. Joint estimation yielded six trajectories: low stable, low increasers, medium increasers, medium desisters, high desisters, and high increasers. Membership in the high increaser group was predicted by male gender, unmarried parents, African American ethnicity, and maternal authoritarian and permissive parenting. Permissive parenting also predicted membership in the medium increaser group. This is one of the first studies to examine social aggression longitudinally across this developmental period. Though the results challenge the claim that social aggression is at its peak in early adolescence, the findings emphasize the importance of considering different developmental trajectories in trying to understand origins and outcomes of aggression.

Sulfur Dioxide Accelerates the Heterogeneous Oxidation Rate of Organic Aerosol by Hydroxyl Radicals

DOE PAGES

Richards-Henderson, Nicole K.; Goldstein, Allen H.; Wilson, Kevin R.

2016-03-08

There remains considerable uncertainty in how anthropogenic gas phase emissions alter the oxidative aging of organic aerosols in the troposphere. Here we observe a 10-20 fold acceleration in the effective heterogeneous OH oxidation rate of organic aerosol in the presence of SO 2. This acceleration originates from the radical chain reactions propagated by alkoxy radicals, which are formed efficiently inside the particle by the reaction of peroxy radicals with SO 2. As the OH approaches atmospheric concentrations, the radical chain length increases, transforming the aerosol at rates predicted to be up to 10 times the OH-aerosol collision frequency. Model predictions,more » constrained by experiments over orders of magnitude changes in [OH] and [SO 2], suggest that in polluted regions the heterogeneous processing of organic aerosols by OH ([SO 2] ≥ 40 ppb) occur on similar time scales as analogous gas-phase oxidation reactions. These results provide evidence for a previously unidentified mechanism by which organic aerosol oxidation is enhanced by anthropogenic gas phase emissions. (Chemical Equation Presented).« less

Continuity and Change in Social and Physical Aggression from Middle Childhood through Early Adolescence

PubMed Central

Underwood, Marion K.; Beron, Kurt J.; Rosen, Lisa H.

2009-01-01

For a sample followed from age 9–13 (N=281), this investigation examined developmental trajectories for social and physical aggression as measured by teacher ratings. Trajectories for both forms of aggression were estimated first separately, then jointly. Mean levels of both social and physical aggression decreased over time for the overall sample, but with high variability of individual trajectories. Subgroups followed high trajectories for both social and physical aggression. Joint estimation yielded six trajectories: low stable, low increasers, medium increasers, medium desisters, high desisters, and high increasers. Membership in the high increaser group was predicted by male gender, unmarried parents, African American ethnicity, and maternal authoritarian and permissive parenting. Permissive parenting also predicted membership in the medium increaser group. This is one of the first studies to examine social aggression longitudinally across this developmental period. Though the results challenge the claim that social aggression is at its peak in early adolescence, the findings emphasize the importance of considering different developmental trajectories in trying to understand origins and outcomes of aggression. PMID:19685551

Twenty novel mutations in BCKDHA, BCKDHB and DBT genes in a cohort of 52 Saudi Arabian patients with maple syrup urine disease.

PubMed

Imtiaz, Faiqa; Al-Mostafa, Abeer; Allam, Rabab; Ramzan, Khushnooda; Al-Tassan, Nada; Tahir, Asma I; Al-Numair, Nouf S; Al-Hamed, Mohamed H; Al-Hassnan, Zuhair; Al-Owain, Mohammad; Al-Zaidan, Hamad; Al-Amoudi, Mohammad; Qari, Alya; Balobaid, Ameera; Al-Sayed, Moeenaldeen

2017-06-01

Maple syrup urine disease (MSUD), an autosomal recessive inborn error of metabolism due to defects in the branched-chain α-ketoacid dehydrogenase (BCKD) complex, is commonly observed among other inherited metabolic disorders in the kingdom of Saudi Arabia. This report presents the results of mutation analysis of three of the four genes encoding the BCKD complex in 52 biochemically diagnosed MSUD patients originating from Saudi Arabia. The 25 mutations (20 novel) detected spanned across the entire coding regions of the BCKHDA , BCKDHB and DBT genes. There were no mutations found in the DLD gene in this cohort of patients. Prediction effects, conservation and modelling of novel mutations demonstrated that all were predicted to be disease-causing. All mutations presented in a homozygous form and we did not detect the presence of a "founder" mutation in any of three genes. In addition, prenatal molecular genetic testing was successfully carried out on chorionic villus samples or amniocenteses in 10 expectant mothers with affected children with MSUD, molecularly characterized by this study.

ECOUL: an interactive computer tool to study hydraulic behavior of swelling and rigid soils

NASA Astrophysics Data System (ADS)

Perrier, Edith; Garnier, Patricia; Leclerc, Christian

2002-11-01

ECOUL is an interactive, didactic software package which simulates vertical water flow in unsaturated soils. End-users are given an easily-used tool to predict the evolution of the soil water profile, with a large range of possible boundary conditions, through a classical numerical solution scheme for the Richards equation. Soils must be characterized by water retention curves and hydraulic conductivity curves, the form of which can be chosen among different analytical expressions from the literature. When the parameters are unknown, an inverse method is provided to estimate them from available experimental flow data. A significant original feature of the software is to include recent algorithms extending the water flow model to deal with deforming porous media: widespread swelling soils, the volume of which varies as a function of water content, must be described by a third hydraulic characteristic property, the deformation curve. Again, estimation of the parameters by means of inverse procedures and visualization facilities enable exploration, understanding and then prediction of soil hydraulic behavior under various experimental conditions.

Creative Workshop as a Form of Contemporary Art and a Space for Subjective Development

ERIC Educational Resources Information Center

Józefowski, Eugeniusz

2015-01-01

The article presents the original concept of the author's creative workshop which is treated as an art form and the method of education. It contains a presentation of the structure of the original workshop developed by the author in the context of multi-layered relations occurring in the interconnected areas of art and education leading to…

Adaptation of the Mathematics and Technology Attitudes Scale (MTAS) into Turkish: Validity and Reliability Studies for Middle School Students

ERIC Educational Resources Information Center

Tabuk, Mesut

2018-01-01

The paper aims to present the adaptation study of "The Mathematics and Technology Attitudes Scale (MTAS)" into Turkish. The original form MTAS was developed by Pierce, Stacey and Barkatsas (2007) in order to investigate the effect of five different variables in learning mathematics with technology. The original form of the attitudes…

The Diffuse Gamma-Ray Background from Type Ia Supernovae

NASA Technical Reports Server (NTRS)

Lien, Amy; Fields, Brian D.

2012-01-01

The origin of the diffuse extragalactic gamma-ray background (EGB) has been intensively studied but remains unsettled. Current popular source candidates include unresolved star-forming galaxies, starburst galaxies, and blazars. In this paper we calculate the EGB contribution from the interactions of cosmic rays accelerated by Type Ia supernovae, extending earlier work which only included core-collapse supernovae. We consider Type Ia events in star-forming galaxies, but also in quiescent galaxies that lack star formation. In the case of star-forming galaxies, consistently including Type Ia events makes little change to the star-forming EGB prediction, so long as both supernova types have the same cosmic-ray acceleration efficiencies in star-forming galaxies. Thus our updated EGB estimate continues to show that star-forming galaxies can represent a substantial portion of the signal measured by Fermi. In the case of quiescent galaxies, conversely, we find a wide range of possibilities for the EGB contribution. The dominant uncertainty we investigated comes from the mass in hot gas in these objects, which provides targets for cosmic rays: total gas masses are as yet poorly known, particularly at larger radii. Additionally, the EGB estimation is very sensitive to the cosmic-ray acceleration efficiency and confinement, especially in quiescent galaxies. In the most optimistic allowed scenarios, quiescent galaxies can be an important source of the EGB. In this case, star-forming galaxies and quiescent galaxies together will dominate the EGB and leave little room for other contributions. If other sources, such as blazars, are found to have important contributions to the EGB, then either the gas mass or cosmic-ray content of quiescent galaxies must be significantly lower than in their star-forming counterparts. In any case, improved Fermi EGB measurements will provide important constraints on hot gas and cosmic rays in quiescent galaxies.

Untangling the origin of viruses and their impact on cellular evolution.

PubMed

Nasir, Arshan; Sun, Feng-Jie; Kim, Kyung Mo; Caetano-Anollés, Gustavo

2015-04-01

The origin and evolution of viruses remain mysterious. Here, we focus on the distribution of viral replicons in host organisms, their morphological features, and the evolution of highly conserved protein and nucleic acid structures. The apparent inability of RNA viral replicons to infect contemporary akaryotic species suggests an early origin of RNA viruses and their subsequent loss in akaryotes. A census of virion morphotypes reveals that advanced forms were unique to viruses infecting a specific supergroup, while simpler forms were observed in viruses infecting organisms in all forms of cellular life. Results hint toward an ancient origin of viruses from an ancestral virus harboring either filamentous or spherical virions. Finally, phylogenetic trees built from protein domain and tRNA structures in thousands of genomes suggest that viruses evolved via reductive evolution from ancient cells. The analysis presents a complete account of the evolutionary history of cells and viruses and identifies viruses as crucial agents influencing cellular evolution. © 2015 New York Academy of Sciences.

Evaluating Word Prediction Software for Students with Physical Disabilities

ERIC Educational Resources Information Center

Mezei, Peter; Heller, Kathryn Wolff

2005-01-01

Although word prediction software was originally developed for individuals with physical disabilities, little research has been conducted featuring participants with physical disabilities. Using the Co:Writer 4000 word prediction software, three participants with physical disabilities improved typing rate and spelling accuracy, and two of these…

Using a RIVPACS model to predict expected macrofaunal species richness in Puget Sound

EPA Science Inventory

As part of a project to develop regional indicators for Pacific coastal environments using soft-bottom benthic species, we are evaluating a RIVPACS predictive model (River InVertebrate Prediction and Classification System). This approach was originally developed for rivers and s...

Improving the mapping of crop types in the Midwestern U.S. by fusing Landsat and MODIS satellite data

NASA Astrophysics Data System (ADS)

Zhu, Likai; Radeloff, Volker C.; Ives, Anthony R.

2017-06-01

Mapping crop types is of great importance for assessing agricultural production, land-use patterns, and the environmental effects of agriculture. Indeed, both radiometric and spatial resolution of Landsat's sensors images are optimized for cropland monitoring. However, accurate mapping of crop types requires frequent cloud-free images during the growing season, which are often not available, and this raises the question of whether Landsat data can be combined with data from other satellites. Here, our goal is to evaluate to what degree fusing Landsat with MODIS Nadir Bidirectional Reflectance Distribution Function (BRDF)-Adjusted Reflectance (NBAR) data can improve crop-type classification. Choosing either one or two images from all cloud-free Landsat observations available for the Arlington Agricultural Research Station area in Wisconsin from 2010 to 2014, we generated 87 combinations of images, and used each combination as input into the Spatial and Temporal Adaptive Reflectance Fusion Model (STARFM) algorithm to predict Landsat-like images at the nominal dates of each 8-day MODIS NBAR product. Both the original Landsat and STARFM-predicted images were then classified with a support vector machine (SVM), and we compared the classification errors of three scenarios: 1) classifying the one or two original Landsat images of each combination only, 2) classifying the one or two original Landsat images plus all STARFM-predicted images, and 3) classifying the one or two original Landsat images together with STARFM-predicted images for key dates. Our results indicated that using two Landsat images as the input of STARFM did not significantly improve the STARFM predictions compared to using only one, and predictions using Landsat images between July and August as input were most accurate. Including all STARFM-predicted images together with the Landsat images significantly increased average classification error by 4% points (from 21% to 25%) compared to using only Landsat images. However, incorporating only STARFM-predicted images for key dates decreased average classification error by 2% points (from 21% to 19%) compared to using only Landsat images. In particular, if only a single Landsat image was available, adding STARFM predictions for key dates significantly decreased the average classification error by 4 percentage points from 30% to 26% (p < 0.05). We conclude that adding STARFM-predicted images can be effective for improving crop-type classification when only limited Landsat observations are available, but carefully selecting images from a full set of STARFM predictions is crucial. We developed an approach to identify the optimal subsets of all STARFM predictions, which gives an alternative method of feature selection for future research.

Colorizing SENTINEL-1 SAR Images Using a Variational Autoencoder Conditioned on SENTINEL-2 Imagery

NASA Astrophysics Data System (ADS)

Schmitt, M.; Hughes, L. H.; Körner, M.; Zhu, X. X.

2018-05-01

In this paper, we have shown an approach for the automatic colorization of SAR backscatter images, which are usually provided in the form of single-channel gray-scale imagery. Using a deep generative model proposed for the purpose of photograph colorization and a Lab-space-based SAR-optical image fusion formulation, we are able to predict artificial color SAR images, which disclose much more information to the human interpreter than the original SAR data. Future work will aim at further adaption of the employed procedure to our special case of multi-sensor remote sensing imagery. Furthermore, we will investigate if the low-level representations learned intrinsically by the deep network can be used for SAR image interpretation in an end-to-end manner.

Size distribution of oceanic air bubbles entrained in sea-water by wave-breaking

NASA Technical Reports Server (NTRS)

Resch, F.; Avellan, F.

1982-01-01

The size of oceanic air bubbles produced by whitecaps and wave-breaking is determined. The production of liquid aerosols at the sea surface is predicted. These liquid aerosols are at the origin of most of the particulate materials exchanged between the ocean and the atmosphere. A prototype was designed and built using an optical technique based on the principle of light scattering at an angle of ninety degrees from the incident light beam. The output voltage is a direct function of the bubble diameter. Calibration of the probe was carried out within a range of 300 microns to 1.2 mm. Bubbles produced by wave-breaking in a large air-sea interaction simulating facility. Experimental results are given in the form of size spectrum.

Meteoritic Stardust and the Presolar History of the Solar Neighborhood

NASA Astrophysics Data System (ADS)

Nittler, Larry R.

Presolar stardust is present at low levels in meteorites and cometary dust and identified as ancient stellar matter by unusual isotopic compositions reflecting nuclear processes in stellar interiors and galactic chemical evolution. Most grains originated in winds from asymptotic giant branch (AGB) stars and supernova and their isotopic compositions provide important constraints on models of evolution and nucleosynthesis in these environments. The presolar grains from AGB stars appear to have formed in a lower-mass population of stars than predicted by GCE models. A merger of the Milky Way with a dwarf galaxy some 1 Gyr before the birth of the Solar System may explain this and other grain observations and the data thus can provide a unique window into the presolar history of the solar neighborhood.

Al4H7− is a resilient building block for aluminum hydrogen cluster materials

PubMed Central

Roach, P. J.; Reber, A. C.; Woodward, W. H.; Khanna, S. N.; Castleman, A. W.

2007-01-01

The formation and oxygen etching of AlnHm− clusters are characterized in a flow reactor experiment with first-principles theoretical investigations to demonstrate the exceptional stability of Al4H7−. The origin of the preponderance of Al4H7− in the mass spectra of hydrogenated aluminum anions and its resistance to O2 etching are discussed. Al4H7− is shown to have the ability to bond with ionic partners to form stable hydrides through addition of an alkali atom [XAl4H7 (X = Li-Cs)]. An intuitive model that can predict the existence of stable hydrogenated cluster species is proposed. The potential synthetic utility of the superatom assemblies built on these units is addressed. PMID:17823245

Stimulated Rayleigh-Bragg scattering in two-photon absorbing media

NASA Astrophysics Data System (ADS)

He, Guang S.; Lu, Changgui; Zheng, Qingdong; Prasad, Paras N.; Zerom, Petros; Boyd, Robert W.; Samoc, Marek

2005-06-01

The origin and mechanism of backward stimulated Rayleigh scattering in two-photon absorbing media are studied theoretically and experimentally. This type of stimulated scattering has the unusual features of no frequency shift and low pump threshold requirement compared to all other known stimulated scattering effects. This frequency-unshifted stimulated Rayleigh scattering effect can be well explained by a two-photon-excitation-enhanced Bragg grating reflection model. The reflection of the forward pump beam from this stationary Bragg grating may substantially enhance the backward Rayleigh scattering beam, providing a positive feedback mechanism without causing any frequency shift. A two-counterpropagating-beam-formed grating experiment in a two-photon absorbing dye solution is conducted. The measured dynamic behavior of Bragg grating formation and reflectivity properties are basically consistent with the predictions from the proposed model.

alpha-Amylase gene of Streptomyces limosus: nucleotide sequence, expression motifs, and amino acid sequence homology to mammalian and invertebrate alpha-amylases.

PubMed Central

Long, C M; Virolle, M J; Chang, S Y; Chang, S; Bibb, M J

1987-01-01

The nucleotide sequence of the coding and regulatory regions of the alpha-amylase gene (aml) of Streptomyces limosus was determined. High-resolution S1 mapping was used to locate the 5' end of the transcript and demonstrated that the gene is transcribed from a unique promoter. The predicted amino acid sequence has considerable identity to mammalian and invertebrate alpha-amylases, but not to those of plant, fungal, or eubacterial origin. Consistent with this is the susceptibility of the enzyme to an inhibitor of mammalian alpha-amylases. The amino-terminal sequence of the extracellular enzyme was determined, revealing the presence of a typical signal peptide preceding the mature form of the alpha-amylase. Images PMID:3500166

Performance Analysis of a Ring Current Model Driven by Global MHD

NASA Astrophysics Data System (ADS)

Falasca, A.; Keller, K. A.; Fok, M.; Hesse, M.; Gombosi, T.

2003-12-01

Effectively modeling the high-energy particles in Earth's inner magnetosphere has the potential to improve safety in both manned and unmanned spacecraft. One model of this environment is the Fok Ring Current Model. This model can utilize as inputs both solar wind data, and empirical ionospheric electric field and magnetic field models. Alternatively, we have a procedure which allows the model to be driven by outputs from the BATS-R-US global MHD model. By using in-situ satellite data we will compare the predictive capability of this model in its original stand-alone form, to that of the model when driven by the BATS-R-US Global Magnetosphere Model. As a basis for comparison we use the April 2002 and May 2003 storms where suitable LANL geosynchronous data are available.

Compression and communication in the cultural evolution of linguistic structure.

PubMed

Kirby, Simon; Tamariz, Monica; Cornish, Hannah; Smith, Kenny

2015-08-01

Language exhibits striking systematic structure. Words are composed of combinations of reusable sounds, and those words in turn are combined to form complex sentences. These properties make language unique among natural communication systems and enable our species to convey an open-ended set of messages. We provide a cultural evolutionary account of the origins of this structure. We show, using simulations of rational learners and laboratory experiments, that structure arises from a trade-off between pressures for compressibility (imposed during learning) and expressivity (imposed during communication). We further demonstrate that the relative strength of these two pressures can be varied in different social contexts, leading to novel predictions about the emergence of structured behaviour in the wild. Copyright © 2015 The Authors. Published by Elsevier B.V. All rights reserved.

Flare forecasting at the Met Office Space Weather Operations Centre

NASA Astrophysics Data System (ADS)

Murray, S. A.; Bingham, S.; Sharpe, M.; Jackson, D. R.

2017-04-01

The Met Office Space Weather Operations Centre produces 24/7/365 space weather guidance, alerts, and forecasts to a wide range of government and commercial end-users across the United Kingdom. Solar flare forecasts are one of its products, which are issued multiple times a day in two forms: forecasts for each active region on the solar disk over the next 24 h and full-disk forecasts for the next 4 days. Here the forecasting process is described in detail, as well as first verification of archived forecasts using methods commonly used in operational weather prediction. Real-time verification available for operational flare forecasting use is also described. The influence of human forecasters is highlighted, with human-edited forecasts outperforming original model results and forecasting skill decreasing over longer forecast lead times.

Dynamic stabilities of icosahedral-like clusters and their ability to form quasicrystals

DOE Office of Scientific and Technical Information (OSTI.GOV)

Liang, Xiaogang; Hamid, Ilyar; Duan, Haiming, E-mail: dhm@xju.edu.cn

2016-06-15

The dynamic stabilities of the icosahedral-like clusters containing up to 2200 atoms are investigated for 15 metal elements. The clusters originate from five different initial structures (icosahedron, truncated decahedron, octahedron, closed-shell fragment of an HCP structure, and non-closed-shell fragment of an HCP structure). The obtained order of the dynamic stabilities of the icosahedral-like clusters can be assigned to three groups, from stronger to weaker, according to the size ranges involved: (Zr, Al, Ti) > (Cu, Fe, Co, Ni, Mg, Ag) > (Pb, Au, Pd, Pt, Rh, Ir), which correspond to the predicted formation ability of the quasicrystals. The differences ofmore » the sequences can be explained by analyzing the parameters of the Gupta-type many-body inter-atomic potentials.« less

The Prescription Drug User Fee Act: Cause for Concern?

PubMed

Gabay, Michael

2018-04-01

The Prescription Drug User Fee Act (PDUFA) was originally enacted into law in 1992. PDUFA provides the Food and Drug Administration (FDA) with needed revenue in the form of various fees paid by drug and biologic manufacturers. The FDA utilizes this revenue to streamline the review and approval process for medications. Since the enactment of PDUFA, the median approval time for priority new drug applications and biologics license applications has reduced significantly. The FDA views PDUFA as a successful program that provides a consistent revenue stream to the agency, improves access to medications for patients, and allows industry to have a more predictable product review timeline. However, critics of PDUFA cite concerns including the potential for a lack of FDA independence and medication safety issues involving drugs approved after the existence of PDUFA.

Theoretical investigation on the chemoselective N-heterocyclic carbene-catalyzed cross-benzoin reactions.

PubMed

Liu, Tao; Han, Shu-Min; Han, Ling-Li; Wang, Lu; Cui, Xiang-Yang; Du, Chong-Yang; Bi, Siwei

2015-03-28

A density functional theory study was performed to understand the detailed mechanisms of the cross-benzoin reactions catalyzed by N-heterocyclic carbene (NHC) species. Our theoretical study predicted that the first H-transfer operates with water in solution as a mediator, and the second H-transfer undergoes a concerted mechanism rather than a stepwise one. In addition, the chemoselectivity of the reactions studied in this work has been explored. P1 was obtained as a major product mainly due to the more stable intermediate formed by reaction of NHC with reactant R1. Different steric effects resulting from the fused six-membered ring in transition state TS7 and the fused five-membered ring in transition state TS13 are the origin leading to the chemoselectivity.

Emergence of two types of terrestrial planet on solidification of magma ocean.

PubMed

Hamano, Keiko; Abe, Yutaka; Genda, Hidenori

2013-05-30

Understanding the origins of the diversity in terrestrial planets is a fundamental goal in Earth and planetary sciences. In the Solar System, Venus has a similar size and bulk composition to those of Earth, but it lacks water. Because a richer variety of exoplanets is expected to be discovered, prediction of their atmospheres and surface environments requires a general framework for planetary evolution. Here we show that terrestrial planets can be divided into two distinct types on the basis of their evolutionary history during solidification from the initially hot molten state expected from the standard formation model. Even if, apart from their orbits, they were identical just after formation, the solidified planets can have different characteristics. A type I planet, which is formed beyond a certain critical distance from the host star, solidifies within several million years. If the planet acquires water during formation, most of this water is retained and forms the earliest oceans. In contrast, on a type II planet, which is formed inside the critical distance, a magma ocean can be sustained for longer, even with a larger initial amount of water. Its duration could be as long as 100 million years if the planet is formed together with a mass of water comparable to the total inventory of the modern Earth. Hydrodynamic escape desiccates type II planets during the slow solidification process. Although Earth is categorized as type I, it is not clear which type Venus is because its orbital distance is close to the critical distance. However, because the dryness of the surface and mantle predicted for type II planets is consistent with the characteristics of Venus, it may be representative of type II planets. Also, future observations may have a chance to detect not only terrestrial exoplanets covered with water ocean but also those covered with magma ocean around a young star.

DOE Office of Scientific and Technical Information (OSTI.GOV)

Wrighton, Kelly C.; Castelle, Cindy J.; Varaljay, Vanessa A.

Metagenomic studies recently uncovered form II/III RubisCO genes, originally thought to only occur in archaea, from uncultivated bacteria of the candidate phyla radiation (CPR). There are no isolated CPR bacteria and these organisms are predicted to have limited metabolic capacities. Here we expand the known diversity of RubisCO from CPR lineages. We report a form of RubisCO, distantly similar to the archaeal form III RubisCO, in some CPR bacteria from the Parcubacteria (OD1), WS6 and Microgenomates (OP11) phyla. In addition, we significantly expand the Peregrinibacteria (PER) II/III RubisCO diversity and report the first II/III RubisCO sequences from the Microgenomates andmore » WS6 phyla. To provide a metabolic context for these RubisCOs, we reconstructed near-complete ( > 93%) PER genomes and the first closed genome for a WS6 bacterium, for which we propose the phylum name Dojkabacteria. Genomic and bioinformatic analyses suggest that the CPR RubisCOs function in a nucleoside pathway similar to that proposed in Archaea. Detection of form II/III RubisCO and nucleoside metabolism gene transcripts from a PER supports the operation of this pathway in situ. We demonstrate that the PER form II/III RubisCO is catalytically active, fixing CO 2 to physiologically complement phototrophic growth in a bacterial photoautotrophic RubisCO deletion strain. We propose that the identification of these RubisCOs across a radiation of obligately fermentative, small-celled organisms hints at a widespread, simple metabolic platform in which ribose may be a prominent currency.« less

Use of bio-informatics assessment schema (BIAS) to improve diagnosis and prognosis of myocardial perfusion data: results from the NHLBI-sponsored women’s ischemia syndrome evaluation (WISE)

PubMed Central

Pohost, Gerald M.; Bairey Merz, C. Noel; Shaw, Leslee J.; Sopko, George; Rogers, William J.; Sharaf, Barry L.; Pepine, Carl J.; Thompson, Diane V.; Rayarao, Geetha; Tauxe, Lindsey; Kelsey, Sheryl F.; Biederman, Robert W. W.

2016-01-01

Background We introduce an algorithmic approach to optimize diagnostic and prognostic value of gated cardiac single photon emission computed tomography (SPECT) and magnetic resonance (MR) myocardial perfusion imaging (MPI) modalities in women with suspected myocardial ischemia. The novel approach: bio-informatics assessment schema (BIAS) forms a mathematical model utilizing MPI data and cardiac metrics generated by one modality to predict the MPI status of another modality. The model identifies cardiac features that either enhance or mask the image-based evidence of ischemia. For each patient, the BIAS model value is used to set an appropriate threshold for the detection of ischemia. Methods Women (n=130), with symptoms and signs of suspected myocardial ischemia, underwent MPI assessment for regional perfusion defects using two different modalities: gated SPECT and MR. To determine perfusion status, MR data were evaluated qualitatively (MRIQL) and semi-quantitatively (MRISQ) while SPECT data were evaluated using conventional clinical criteria. Evaluators were masked to results of the alternate modality. These MPI status readings were designated “original”. Two regression models designated “BIAS” models were generated to model MPI status obtained with one modality (e.g., MRI) compared with a second modality (e.g., SPECT), but importantly, the BIAS models did not include the primary Original MPI reading of the predicting modality. Instead, the BIAS models included auxiliary measurements like left ventricular chamber volumes and myocardial wall thickness. For each modality, the BIAS model was used to set a progressive threshold for interpretation of MPI status. Women were then followed for 38±14 months for the development of a first major adverse cardiovascular event [MACE: CV death, nonfatal myocardial infarction (MI) or hospitalization for heart failure]. Original and BIAS-augmented perfusion status were compared in their ability to detect coronary artery disease (CAD) and for prediction of MACE. Results Adverse events occurred in 14 (11%) women and CAD was present in 13 (10%). There was a positive correlation of maximum coronary artery stenosis and BIAS score for MRI and SPECT (P<0.001). Receiver operator characteristic (ROC) analysis was conducted and showed an increase in the area under the curve of the BIAS-augmented MPI interpretation of MACE vs. the original for MRISQ (0.78 vs. 0.54), MRIQL (0.78 vs. 0.64), SPECT (0.82 vs. 0.63) and the average of the three readings (0.80±0.02 vs. 0.60±0.05, P<0.05). Conclusions Increasing values of the BIAS score generated by both MRI and SPECT corresponded to the increasing prevalence of CAD and MACE. The BIAS-augmented detection of ischemia better predicted MACE compared with the Original reading for the MPI data for both MRI and SPECT. PMID:27747165

Structure of the active form of human origin recognition complex and its ATPase motor module

PubMed Central

Tocilj, Ante; On, Kin Fan; Yuan, Zuanning; Sun, Jingchuan; Elkayam, Elad; Li, Huilin; Stillman, Bruce; Joshua-Tor, Leemor

2017-01-01

Binding of the Origin Recognition Complex (ORC) to origins of replication marks the first step in the initiation of replication of the genome in all eukaryotic cells. Here, we report the structure of the active form of human ORC determined by X-ray crystallography and cryo-electron microscopy. The complex is composed of an ORC1/4/5 motor module lobe in an organization reminiscent of the DNA polymerase clamp loader complexes. A second lobe contains the ORC2/3 subunits. The complex is organized as a double-layered shallow corkscrew, with the AAA+ and AAA+-like domains forming one layer, and the winged-helix domains (WHDs) forming a top layer. CDC6 fits easily between ORC1 and ORC2, completing the ring and the DNA-binding channel, forming an additional ATP hydrolysis site. Analysis of the ATPase activity of the complex provides a basis for understanding ORC activity as well as molecular defects observed in Meier-Gorlin Syndrome mutations. DOI: http://dx.doi.org/10.7554/eLife.20818.001 PMID:28112645

A human-specific mutation leads to the origin of a novel splice form of neuropsin (KLK8), a gene involved in learning and memory.

PubMed

Lu, Zhi-xiang; Peng, Jia; Su, Bing

2007-10-01

Neuropsin (kallikrein 8, KLK8) is a secreted-type serine protease preferentially expressed in the central nervous system and involved in learning and memory. Its splicing pattern is different in human and mouse, with the longer form (type II) only expressed in human. Sequence analysis suggested a recent origin of type II during primate evolution. Here we demonstrate that the type II form is absent in nonhuman primates, and is thus a human-specific splice form. With the use of an in vitro splicing assay, we show that a human-specific T to A mutation (c.71-127T>A) triggers the change of splicing pattern, leading to the origin of a novel splice form in the human brain. Using mutation assay, we prove that this mutation is not only necessary but also sufficient for type II expression. Our results demonstrate a molecular mechanism for the creation of novel proteins through alternative splicing in the central nervous system during human evolution. Copyright 2007 Wiley-Liss, Inc.

DNA sequencing and predictions of the cosmic theory of life

NASA Astrophysics Data System (ADS)

Wickramasinghe, N. Chandra

2013-01-01

The theory of cometary panspermia, developed by the late Sir Fred Hoyle and the present author argues that life originated cosmically as a unique event in one of a great multitude of comets or planetary bodies in the Universe. Life on Earth did not originate here but was introduced by impacting comets, and its further evolution was driven by the subsequent acquisition of cosmically derived genes. Explicit predictions of this theory published in 1979-1981, stating how the acquisition of new genes drives evolution, are compared with recent developments in relation to horizontal gene transfer, and the role of retroviruses in evolution. Precisely-stated predictions of the theory of cometary panspermia are shown to have been verified.

DNA Sequencing and Predictions of the Cosmic Theory of Life

NASA Astrophysics Data System (ADS)

Wickramasinghe, N. Chandra

The theory of cometary panspermia, developed by the late Sir Fred Hoyle and the present author argues that life originated cosmically as a unique event in one of a great multitude of comets or planetary bodies in the Universe. Life on Earth did not originate here but was introduced by impacting comets, and its further evolution was driven by the subsequent acquisition of cosmically derived genes. Explicit predictions of this theory published in 1979-1981, stating how the acquisition of new genes drives evolution, are compared with recent developments in relation to horizontal gene transfer, and the role of retroviruses in evolution. Precisely-stated predictions of the theory of cometary panspermia are shown to have been verified.

A hybrid approach to advancing quantitative prediction of tissue distribution of basic drugs in human

DOE Office of Scientific and Technical Information (OSTI.GOV)

Poulin, Patrick, E-mail: patrick-poulin@videotron.ca; Ekins, Sean; Department of Pharmaceutical Sciences, School of Pharmacy, University of Maryland, 20 Penn Street, Baltimore, MD 21201

A general toxicity of basic drugs is related to phospholipidosis in tissues. Therefore, it is essential to predict the tissue distribution of basic drugs to facilitate an initial estimate of that toxicity. The objective of the present study was to further assess the original prediction method that consisted of using the binding to red blood cells measured in vitro for the unbound drug (RBCu) as a surrogate for tissue distribution, by correlating it to unbound tissue:plasma partition coefficients (Kpu) of several tissues, and finally to predict volume of distribution at steady-state (V{sub ss}) in humans under in vivo conditions. Thismore » correlation method demonstrated inaccurate predictions of V{sub ss} for particular basic drugs that did not follow the original correlation principle. Therefore, the novelty of this study is to provide clarity on the actual hypotheses to identify i) the impact of pharmacological mode of action on the generic correlation of RBCu-Kpu, ii) additional mechanisms of tissue distribution for the outlier drugs, iii) molecular features and properties that differentiate compounds as outliers in the original correlation analysis in order to facilitate its applicability domain alongside the properties already used so far, and finally iv) to present a novel and refined correlation method that is superior to what has been previously published for the prediction of human V{sub ss} of basic drugs. Applying a refined correlation method after identifying outliers would facilitate the prediction of more accurate distribution parameters as key inputs used in physiologically based pharmacokinetic (PBPK) and phospholipidosis models.« less

Sensor fusion display evaluation using information integration models in enhanced/synthetic vision applications

NASA Technical Reports Server (NTRS)

Foyle, David C.

1993-01-01

Based on existing integration models in the psychological literature, an evaluation framework is developed to assess sensor fusion displays as might be implemented in an enhanced/synthetic vision system. The proposed evaluation framework for evaluating the operator's ability to use such systems is a normative approach: The pilot's performance with the sensor fusion image is compared to models' predictions based on the pilot's performance when viewing the original component sensor images prior to fusion. This allows for the determination as to when a sensor fusion system leads to: poorer performance than one of the original sensor displays, clearly an undesirable system in which the fused sensor system causes some distortion or interference; better performance than with either single sensor system alone, but at a sub-optimal level compared to model predictions; optimal performance compared to model predictions; or, super-optimal performance, which may occur if the operator were able to use some highly diagnostic 'emergent features' in the sensor fusion display, which were unavailable in the original sensor displays.

A redefinition of the representation of mammary cells and enzyme activities in a lactating dairy cow model.

PubMed

Hanigan, M D; Rius, A G; Kolver, E S; Palliser, C C

2007-08-01

The Molly model predicts various aspects of digestion and metabolism in the cow, including nutrient partitioning between milk and body stores. It has been observed previously that the model underpredicts milk component yield responses to nutrition and consequently overpredicts body energy store responses. In Molly, mammary enzyme activity is represented as an aggregate of mammary cell numbers and activity per cell with minimal endocrine regulation. Work by others suggests that mammary cells can cycle between active and quiescent states in response to various stimuli. Simple models of milk production have demonstrated the utility of this representation when using the model to simulate variable milking and nutrient restriction. It was hypothesized that replacing the current representation of mammary cells and enzyme activity in Molly with a representation of active and quiescent cells and improving the representation of endocrine control of cell activity would improve predictions of milk component yield. The static representation of cell numbers was replaced with a representation of cell growth during gestation and early lactation periods and first-order cell death. Enzyme capacity for fat and protein synthesis was assumed to be proportional to cell numbers. Enzyme capacity for lactose synthesis was represented with the same equation form as for cell numbers. Data used for parameter estimation were collected as part of an extended lactation trial. Cows with North American or New Zealand genotypes were fed 0, 3, or 6 kg of concentrate dry matter daily during a 600-d lactation. The original model had root mean square prediction errors of 17.7, 22.3, and 19.8% for lactose, protein, and fat yield, respectively, as compared with values of 8.3, 9.4, and 11.7% for the revised model, respectively. The original model predicted body weight with an error of 19.7% vs. 5.7% for the revised model. Based on these observations, it was concluded that representing mammary synthetic capacity as a function of active cell numbers and revisions to endocrine control of cell activity was meritorious.

Alternative splicing originates different domain structure organization of Lutzomyia longipalpis chitinases.

PubMed

Ortigão-Farias, João Ramalho; Di-Blasi, Tatiana; Telleria, Erich Loza; Andorinho, Ana Carolina; Lemos-Silva, Thais; Ramalho-Ortigão, Marcelo; Tempone, Antônio Jorge; Traub-Csekö, Yara Maria

2018-02-01

BACKGROUND The insect chitinase gene family is composed by more than 10 paralogs, which can codify proteins with different domain structures. In Lutzomyia longipalpis, the main vector of visceral leishmaniasis in Brazil, a chitinase cDNA from adult female insects was previously characterized. The predicted protein contains one catalytic domain and one chitin-binding domain (CBD). The expression of this gene coincided with the end of blood digestion indicating a putative role in peritrophic matrix degradation. OBJECTIVES To determine the occurrence of alternative splicing in chitinases of L. longipalpis. METHODS We sequenced the LlChit1 gene from a genomic clone and the three spliced forms obtained by reverse transcription polymerase chain reaction (RT-PCR) using larvae cDNA. FINDINGS We showed that LlChit1 from L. longipalpis immature forms undergoes alternative splicing. The spliced form corresponding to the adult cDNA was named LlChit1A and the two larvae specific transcripts were named LlChit1B and LlChit1C. The B and C forms possess stop codons interrupting the translation of the CBD. The A form is present in adult females post blood meal, L4 larvae and pre-pupae, while the other two forms are present only in L4 larvae and disappear just before pupation. Two bands of the expected size were identified by Western blot only in L4 larvae. MAIN CONCLUSIONS We show for the first time alternative splicing generating chitinases with different domain structures increasing our understanding on the finely regulated digestion physiology and shedding light on a potential target for controlling L. longipalpis larval development.

Modification of an Existing In vitro Method to Predict Relative Bioavailable Arsenic in Soils

EPA Science Inventory

The soil matrix can sequester arsenic (As) and reduces its exposure by soil ingestion. In vivo dosing studies and in vitro gastrointestinal (IVG) methods have been used to predict relative bioavailable (RBA) As. Originally, the Ohio State University (OSU-IVG) method predicted R...

Predicting the Creativity of Design Majors Based on the Interaction of Diverse Personality Traits

ERIC Educational Resources Information Center

Chang, Chi-Cheng; Peng, Li-Pei; Lin, Ju-Sen; Liang, Chaoyun

2015-01-01

In this study, design majors were analysed to examine how diverse personality traits interact and influence student creativity. The study participants comprised 476 design majors. The results indicated that openness predicted the originality of creativity, whereas openness, conscientiousness and agreeableness predicted the usefulness of…

Spatial scale and distribution of neurovascular signals underlying decoding of orientation and eye of origin from fMRI data

PubMed Central

Harrison, Charlotte; Jackson, Jade; Oh, Seung-Mock; Zeringyte, Vaida

2016-01-01

Multivariate pattern analysis of functional magnetic resonance imaging (fMRI) data is widely used, yet the spatial scales and origin of neurovascular signals underlying such analyses remain unclear. We compared decoding performance for stimulus orientation and eye of origin from fMRI measurements in human visual cortex with predictions based on the columnar organization of each feature and estimated the spatial scales of patterns driving decoding. Both orientation and eye of origin could be decoded significantly above chance in early visual areas (V1–V3). Contrary to predictions based on a columnar origin of response biases, decoding performance for eye of origin in V2 and V3 was not significantly lower than that in V1, nor did decoding performance for orientation and eye of origin differ significantly. Instead, response biases for both features showed large-scale organization, evident as a radial bias for orientation, and a nasotemporal bias for eye preference. To determine whether these patterns could drive classification, we quantified the effect on classification performance of binning voxels according to visual field position. Consistent with large-scale biases driving classification, binning by polar angle yielded significantly better decoding performance for orientation than random binning in V1–V3. Similarly, binning by hemifield significantly improved decoding performance for eye of origin. Patterns of orientation and eye preference bias in V2 and V3 showed a substantial degree of spatial correlation with the corresponding patterns in V1, suggesting that response biases in these areas originate in V1. Together, these findings indicate that multivariate classification results need not reflect the underlying columnar organization of neuronal response selectivities in early visual areas. NEW & NOTEWORTHY Large-scale response biases can account for decoding of orientation and eye of origin in human early visual areas V1–V3. For eye of origin this pattern is a nasotemporal bias; for orientation it is a radial bias. Differences in decoding performance across areas and stimulus features are not well predicted by differences in columnar-scale organization of each feature. Large-scale biases in extrastriate areas are spatially correlated with those in V1, suggesting biases originate in primary visual cortex. PMID:27903637

Cumulative contextual and individual disadvantages over the life course and adult functional somatic symptoms in Sweden.

PubMed

Gustafsson, Per E; Hammarström, Anne; San Sebastian, Miguel

2015-08-01

Disadvantage, originating in one's residential context or in one's past life course, has been shown to impact on health in adulthood. There is however little research on the accumulated health impact of both neighbourhood and individual conditions over the life course. This study aims to examine whether the accumulation of contextual and individual disadvantages from adolescence to middle-age predicts functional somatic symptoms (FSS) in middle-age, taking baseline health into account. The sample is the age 16, 21, 30 and 42 surveys of the prospective Northern Swedish Cohort, with analytical sample size n = 910 (85% of the original cohort). FSS at age 16 and 42, and cumulative socioeconomic disadvantage, social adversity and material adversity between 16 and 42 years were operationalized from questionnaires, and cumulative neighbourhood disadvantage between 16 and 42 years from register data. Results showed accumulation of disadvantages jointly explained 9-12% of FSS variance. In the total sample, cumulative neighbourhood and socioeconomic disadvantage significantly predicted FSS at age 42 in the total sample. In women, neighbourhood disadvantage but not socioeconomic disadvantage contributed significantly, whereas in men, socioeconomic but not neighbourhood disadvantage contributed significantly. In all analyses, associations were largely explained by the parallel accumulation of social and material adversities, but not by symptoms at baseline. In conclusion, the accumulation of diverse forms of disadvantages together plays an important role for somatic complaints in adulthood, independently of baseline health. © The Author 2014. Published by Oxford University Press on behalf of the European Public Health Association. All rights reserved.

Updating Risk Prediction Tools: A Case Study in Prostate Cancer

PubMed Central

Ankerst, Donna P.; Koniarski, Tim; Liang, Yuanyuan; Leach, Robin J.; Feng, Ziding; Sanda, Martin G.; Partin, Alan W.; Chan, Daniel W; Kagan, Jacob; Sokoll, Lori; Wei, John T; Thompson, Ian M.

2013-01-01

Online risk prediction tools for common cancers are now easily accessible and widely used by patients and doctors for informed decision-making concerning screening and diagnosis. A practical problem is as cancer research moves forward and new biomarkers and risk factors are discovered, there is a need to update the risk algorithms to include them. Typically the new markers and risk factors cannot be retrospectively measured on the same study participants used to develop the original prediction tool, necessitating the merging of a separate study of different participants, which may be much smaller in sample size and of a different design. Validation of the updated tool on a third independent data set is warranted before the updated tool can go online. This article reports on the application of Bayes rule for updating risk prediction tools to include a set of biomarkers measured in an external study to the original study used to develop the risk prediction tool. The procedure is illustrated in the context of updating the online Prostate Cancer Prevention Trial Risk Calculator to incorporate the new markers %freePSA and [−2]proPSA measured on an external case control study performed in Texas, U.S.. Recent state-of-the art methods in validation of risk prediction tools and evaluation of the improvement of updated to original tools are implemented using an external validation set provided by the U.S. Early Detection Research Network. PMID:22095849

Updating risk prediction tools: a case study in prostate cancer.

PubMed

Ankerst, Donna P; Koniarski, Tim; Liang, Yuanyuan; Leach, Robin J; Feng, Ziding; Sanda, Martin G; Partin, Alan W; Chan, Daniel W; Kagan, Jacob; Sokoll, Lori; Wei, John T; Thompson, Ian M

2012-01-01

Online risk prediction tools for common cancers are now easily accessible and widely used by patients and doctors for informed decision-making concerning screening and diagnosis. A practical problem is as cancer research moves forward and new biomarkers and risk factors are discovered, there is a need to update the risk algorithms to include them. Typically, the new markers and risk factors cannot be retrospectively measured on the same study participants used to develop the original prediction tool, necessitating the merging of a separate study of different participants, which may be much smaller in sample size and of a different design. Validation of the updated tool on a third independent data set is warranted before the updated tool can go online. This article reports on the application of Bayes rule for updating risk prediction tools to include a set of biomarkers measured in an external study to the original study used to develop the risk prediction tool. The procedure is illustrated in the context of updating the online Prostate Cancer Prevention Trial Risk Calculator to incorporate the new markers %freePSA and [-2]proPSA measured on an external case-control study performed in Texas, U.S.. Recent state-of-the art methods in validation of risk prediction tools and evaluation of the improvement of updated to original tools are implemented using an external validation set provided by the U.S. Early Detection Research Network. Copyright © 2012 WILEY-VCH Verlag GmbH & Co. KGaA, Weinheim.

The Moon's Origin.

ERIC Educational Resources Information Center

Cadogan, Peter

1983-01-01

Presents findings and conclusions about the origin of the moon, favoring the capture hypothesis of lunar origin. Advantage of the hypothesis is that it allows the moon to have been formed elsewhere, specifically in a hotter part of the solar nebula, accounting for chemical differences between earth and moon. (JN)

[Summary of Research on Relationship Between Core Convective Structure and Intensity Change in Tropical Cyclones

NASA Technical Reports Server (NTRS)

2005-01-01

The downshear reformation of Tropical Storm Gabrielle (2001) was investigated using radar reflectivity and lightning data that were nearly continuous in time, as well as frequent aircraft reconnaissance flights. Initially the storm was a marginal tropical storm in an environment with strong 850-200 hPa vertical wind shear of 12-13 meters per second and an approaching upper tropospheric trough. Both the observed outflow and an adiabatic balance model calculation showed that the radial-vertical circulation increased with time as the trough approached. Convection was highly asymmetric, with almost all radar return located in one quadrant left of downshear in the storm. Reconnaissance data show that an intense mesovortex formed downshear of the original center. This vortex was located just south of, rather than within, a strong downshear left lightning outbreak, consistent with tilting of the horizontal vorticity associated with the vertical wind shear. The downshear mesovortex contained a 972 hPa minimum central pressure, 20 hPa lower than minimum pressure in the original vortex just three hours earlier. The mesovortex became the new center of the storm, but weakened somewhat prior to landfall. It is argued that dry air carried around the storm from the region of upshear subsidence, as well as the direct effects of the shear, prevented the reformed vortex from continuing to intensify. Despite the subsequent weakening of the reformed center, it reached land with greater intensity than the original center. It is argued that this intensification process was set into motion by the vertical wind shear in the presence of an environment with upward motion forced by the upper tropospheric trough. In addition, the new center formed much closer to the coast and made landfall much earlier than predicted. Such vertical shear-induced intensity and track fluctuations are important to understand, especially in storms approaching the coast. The structures of the highly sheared tropical storm Chantal During CAMEX-4 is also discussed.

Development of an In Vivo and In Vitro Ileal Fermentation Method in a Growing Pig Model.

PubMed

Montoya, Carlos A; de Haas, Edward S; Moughan, Paul J

2018-02-01

Substantial microbial fermentation may occur mainly in the lower small intestine (SI) of human adults, but there is no established methodology to determine this. The study aimed to develop a combined in vivo and in vitro methodology for ileal fermentation based on the pig as an animal model for digestion in human adults. Several aspects of a combined in vivo/in vitro ileal fermentation assay were evaluated. Male 9-wk-old pigs (n = 30; mean ± SD body weight: 23 ± 1.6 kg) were fed a human-type diet (143, 508, 45, 49, and 116 g/kg dry matter diet of crude protein, starch, total lipid, ash, and total dietary fiber) for 15 d. On day 15, pigs were killed, and the last third of the SI was collected to prepare an ileal digesta-based inoculum. Terminal jejunal digesta (last 50 cm of the second third of the SI) were collected as substrate for the assay to test the form of substrate (fresh or freeze-dried), origin (location in jejunum or SI) of the substrate, storage of the inoculum, incubation time (1.2-6.8 h), pH of the medium, and inoculum concentration (6-26 mg inoculum/100 mg substrate). The group of donor pigs used to prepare the inoculum, form of the substrate, origin of the substrate, origin of the inoculum (location in the SI), storage of the inoculum, incubation time, and inoculum concentration did not influence the in vitro ileal organic matter (OM) fermentability (P > 0.05). The in vitro ileal OM fermentability decreased when the pH of the medium increased from 5.5 to 7.5 (31% to 28%; P ≤ 0.05). Predicted (in vivo/in vitro) apparent ileal OM digestibility was similar to the value measured in vivo. Thirty-percent of the terminal jejunal digesta OM was fermented in the ileum. Fiber fermentation in the ileum can be studied using the optimized in vivo/in vitro ileal fermentation method.

Crustal Structure in the Southern Rockall Trough from Satellite Gravity Data: Evidence for Sea-floor Spreading

NASA Astrophysics Data System (ADS)

Chappell, A.; Kusznir, N. J.

2005-05-01

The southern Rockall Trough south of 57 N has previously been interpreted as either an intra-continental rift floored with highly extended continental crust, or a failed oceanic rift formed by Cretaceous sea floor spreading. Satellite gravity, bathymetry data and seismic estimates of sediment thickness are used to derive crustal basement thickness for the southern Rockall Trough and adjacent regions using a gravity inversion method incorporating a correction for the large negative thermal gravity component present in oceanic and stretched continental lithosphere. The marine Bouguer anomaly, derived from satellite free air gravity (Sandwell & Smith 1997) and Gebco 2003 bathymetry data, is inverted using the method of Oldenberg (1974), incorporating an iteratively applied thermal anomaly correction, to give Moho depth. For oceanic crust the thermal anomaly correction is calculated using isochron ages (Muller et al. 1997) and for continental crust from the beta stretching factors resulting from gravity derived crustal basement thickness and an assumed rift age. When sediment thickness and volcanic addition are assumed to be zero, the resulting upper bound of crustal thickness from the gravity inversion is as little as 10 km in the southern Rockall Trough. A segmented axial thickening of the crust at the centre of the Rockall Trough is predicted, between the Barra volcanic ridge and the Anton Dohrn seamount and is interpreted as having a volcanic origin. Inclusion of a sediment thickness correction in the gravity inversion further reduces predicted crustal thickness. A pseudo-sediment-thickness map has been constructed from the available wide-angle data and incorporated in the gravity inversion. The addition of up to 5.5 km of sediment in the gravity inversion reduces the upper bound of crustal thickness to less than 3 km in some locations. The segmented axial thickening and thin crust shown by the gravity inversion, the lack of intra-basinal faulting, and the volcanic origin for the axis shown by normal incidence seismic data, are consistent with a sea-floor spreading origin for the southern Rockall Trough and not formation by intra-continental rifting. We investigate the formation of the southern Rockall Trough using SfMargin, a new model of continental lithosphere thinning leading to continental breakup and sea-floor spreading initiation. Comparisons of the geometry of the southern Rockall Trough predicted by SfMargin with that observed are consistent with a short period (20Ma) of slow Cretaceous sea-floor spreading, followed by thermal subsidence to present day. This work forms part of the NERC Margins iSIMM project. iSIMM investigators are from Liverpool and Cambridge Universities, Badley Geoscience & Schlumberger Cambridge Research supported by the NERC, the DTI, Agip UK, BP, Amerada Hess Ltd, Anadarko, ConocoPhillips, Shell, Statoil and WesternGeco. The iSIMM team comprises NJ Kusznir, RS White, AM Roberts, PAF Christie, A Chappell, J Eccles, R Fletcher, D Healy, N Hurst, ZC Lunnon, CJ Parkin, AW Roberts, LK Smith, V Tymms & R Spitzer.

A simple 2-d thermal model for GMA welds

DOE Office of Scientific and Technical Information (OSTI.GOV)

Matteson, M.A.; Franke, G.L.; Vassilaros, M.G.

1996-12-31

The Rosenthal model of heat distribution from a moving source has been used in many applications to predict the temperature distribution during welding. The equation has performed well in its original form or as modified. The expression has a significant limitation for application to gas metal arc welds (GMAW) that have a papilla extending from the root of the weld bead. The shape of the fusion line between the papilla and the plate surface has a concave shape rather than the expected convex shape. However, at some distance from the fusion line the heat affected zone (HAZ) made visible bymore » etching has the expected convex shape predicted by the Rosenthal expression. This anomaly creates a limitation to the use of the Rosenthal expression for predicting GMAW bead shapes or HAZ temperature histories. Current research at the Naval Surface Warfare Center--Carderock Division (NSWC--CD) to develop a computer based model to predict the microstructure of multi-pass GMAW requires a simple expression to predict the fusion line and temperature history of the HAZ for each weld pass. The solution employed for the NSWC--CD research is a modified Rosenthal expression that has a dual heat source. One heat source is a disk source above the plate surface supplying the majority of the heat. The second heat source is smaller and below the surface of the plate. This second heat source helps simulate the penetration power of many GMAW welds that produces the papilla. The assumptions, strengths and limitations of the model are presented along with some applications.« less

The Predicted Secretome of the Plant Pathogenic Fungus Fusarium graminearum: A Refined Comparative Analysis

PubMed Central

Brown, Neil A.; Antoniw, John; Hammond-Kosack, Kim E.

2012-01-01

The fungus Fusarium graminearum forms an intimate association with the host species wheat whilst infecting the floral tissues at anthesis. During the prolonged latent period of infection, extracellular communication between live pathogen and host cells must occur, implying a role for secreted fungal proteins. The wheat cells in contact with fungal hyphae subsequently die and intracellular hyphal colonisation results in the development of visible disease symptoms. Since the original genome annotation analysis was done in 2007, which predicted the secretome using TargetP, the F. graminearum gene call has changed considerably through the combined efforts of the BROAD and MIPS institutes. As a result of the modifications to the genome and the recent findings that suggested a role for secreted proteins in virulence, the F. graminearum secretome was revisited. In the current study, a refined F. graminearum secretome was predicted by combining several bioinformatic approaches. This strategy increased the probability of identifying truly secreted proteins. A secretome of 574 proteins was predicted of which 99% was supported by transcriptional evidence. The function of the annotated and unannotated secreted proteins was explored. The potential role(s) of the annotated proteins including, putative enzymes, phytotoxins and antifungals are discussed. Characterisation of the unannotated proteins included the analysis of Pfam domains and features associated with known fungal effectors, for example, small size, cysteine-rich and containing internal amino acid repeats. A comprehensive comparative genomic analysis involving 57 fungal and oomycete genomes revealed that only a small number of the predicted F. graminearum secreted proteins can be considered to be either species or sequenced strain specific. PMID:22493673

A Universal Tare Load Prediction Algorithm for Strain-Gage Balance Calibration Data Analysis

NASA Technical Reports Server (NTRS)

Ulbrich, N.

2011-01-01

An algorithm is discussed that may be used to estimate tare loads of wind tunnel strain-gage balance calibration data. The algorithm was originally developed by R. Galway of IAR/NRC Canada and has been described in the literature for the iterative analysis technique. Basic ideas of Galway's algorithm, however, are universally applicable and work for both the iterative and the non-iterative analysis technique. A recent modification of Galway's algorithm is presented that improves the convergence behavior of the tare load prediction process if it is used in combination with the non-iterative analysis technique. The modified algorithm allows an analyst to use an alternate method for the calculation of intermediate non-linear tare load estimates whenever Galway's original approach does not lead to a convergence of the tare load iterations. It is also shown in detail how Galway's algorithm may be applied to the non-iterative analysis technique. Hand load data from the calibration of a six-component force balance is used to illustrate the application of the original and modified tare load prediction method. During the analysis of the data both the iterative and the non-iterative analysis technique were applied. Overall, predicted tare loads for combinations of the two tare load prediction methods and the two balance data analysis techniques showed excellent agreement as long as the tare load iterations converged. The modified algorithm, however, appears to have an advantage over the original algorithm when absolute voltage measurements of gage outputs are processed using the non-iterative analysis technique. In these situations only the modified algorithm converged because it uses an exact solution of the intermediate non-linear tare load estimate for the tare load iteration.

[Discrimination of donkey meat by NIR and chemometrics].

PubMed

Niu, Xiao-Ying; Shao, Li-Min; Dong, Fang; Zhao, Zhi-Lei; Zhu, Yan

2014-10-01

Donkey meat samples (n = 167) from different parts of donkey body (neck, costalia, rump, and tendon), beef (n = 47), pork (n = 51) and mutton (n = 32) samples were used to establish near-infrared reflectance spectroscopy (NIR) classification models in the spectra range of 4,000~12,500 cm(-1). The accuracies of classification models constructed by Mahalanobis distances analysis, soft independent modeling of class analogy (SIMCA) and least squares-support vector machine (LS-SVM), respectively combined with pretreatment of Savitzky-Golay smooth (5, 15 and 25 points) and derivative (first and second), multiplicative scatter correction and standard normal variate, were compared. The optimal models for intact samples were obtained by Mahalanobis distances analysis with the first 11 principal components (PCs) from original spectra as inputs and by LS-SVM with the first 6 PCs as inputs, and correctly classified 100% of calibration set and 98. 96% of prediction set. For minced samples of 7 mm diameter the optimal result was attained by LS-SVM with the first 5 PCs from original spectra as inputs, which gained an accuracy of 100% for calibration and 97.53% for prediction. For minced diameter of 5 mm SIMCA model with the first 8 PCs from original spectra as inputs correctly classified 100% of calibration and prediction. And for minced diameter of 3 mm Mahalanobis distances analysis and SIMCA models both achieved 100% accuracy for calibration and prediction respectively with the first 7 and 9 PCs from original spectra as inputs. And in these models, donkey meat samples were all correctly classified with 100% either in calibration or prediction. The results show that it is feasible that NIR with chemometrics methods is used to discriminate donkey meat from the else meat.

Familism Values as a Protective Factor for Mexican-origin Adolescents Exposed to Deviant Peers

PubMed Central

Germán, Miguelina; Gonzales, Nancy A.; Dumka, Larry

2009-01-01

This study examined interactive relations between adolescent, maternal and paternal familism values and deviant peer affiliations in predicting adolescent externalizing problems within low-income, Mexican-origin families (N = 598). Adolescent, maternal and paternal familism values interacted protectively with deviant peer affiliations to predict lower levels of externalizing problems according to two independent teacher reports. These relations were not found with parent reports of adolescent externalizing problems although these models showed a direct, protective effect of maternal familism values. Consistent with the view that traditional cultural values are protective for Latino adolescents, these results suggest that supporting familism values among Mexican-origin groups is a useful avenue for improving adolescent conduct problems, particularly in a school context. PMID:21776180

[Spanish versions of the Simplified Motor Score and the Glasgow Coma Scale in out-of-hospital treatment of head injury in adults: a preliminary study of each scale's ability to predict adverse events].

PubMed

Roca, Guillem; Mayol, Sergi; García, Esteban; Casajuana, Edgar; Quintana, Salvador

2015-06-01

To determine the ability of the modified (Spanish) version of the Simplified Motor Score (mSMS) to predict adverse events during hospitalization and to compare its predictive ability to that of the Glasgow Coma Scale (GCS) in adults with head injuries treated outside the hospital. Observational study of retrospective cohorts including all patients over the age of 14 years attended for head injuries occurring within 24 hours of treatment by an advanced life-support unit staffed by nurses between May 1, 2013, and May 1, 2014. The mSMS was a translation of the English original, created through a process of discussions of direct and back translations to arrive at consensus. Out-of-hospital patient records were searched to find GCS and mSMS scores. To predict the ability of each scale to predict brain injuries, neurosurgery, intubation, and/or inhospital death, we calculated the area under the receiving operator characteristic curves (AUCs). Of the total of 115 head-injury patients attended, 64 met the inclusion criteria. The mean (SD) age was 47 (24) years. Twelve (18.8%) patients developed some form of adverse event during hospitalization; 91.6% had brain damage, 58.3% required intubation, 8.3% required surgery, and 41.6% died. The AUC for the GCS was 0.907 (95% CI, 0.81-1.00; P<.001); the AUC for the mSMS was 0.796 (95% CI, 0.64-0.95; P=.001). Although the ability of the mSMS to predict in-hospital adverse outcomes is good, it is inferior to the GCS in adults with head injuries attended outside the hospital.

Lung bioaccessibility of contaminants in particulate matter of geological origin.

PubMed

Guney, Mert; Chapuis, Robert P; Zagury, Gerald J

2016-12-01

Human exposure to particulate matter (PM) has been associated with adverse health effects. While inhalation exposure to airborne PM is a prominent research subject, exposure to PM of geological origin (i.e., generated from soil/soil-like material) has received less attention. This review discusses the contaminants in PM of geological origin and their relevance for human exposure and then evaluates lung bioaccessibility assessment methods and their use. PM of geological origin can contain toxic elements as well as organic contaminants. Observed/predicted PM lung clearance times are long, which may lead to prolonged contact with lung environment. Thus, certain exposure scenarios warrant the use of in vitro bioaccessibility testing to predict lung bioavailability. Limited research is available on lung bioaccessibility test development and test application to PM of geological origin. For in vitro tests, test parameter variation between different studies and concerns about physiological relevance indicate a crucial need for test method standardization and comparison with relevant animal data. Research is recommended on (1) developing robust in vitro lung bioaccessibility methods, (2) assessing bioaccessibility of various contaminants (especially polycyclic aromatic hydrocarbons (PAHs)) in PM of diverse origin (surface soils, mine tailings, etc.), and (3) risk characterization to determine relative importance of exposure to PM of geological origin.

Modelling hydrologic responses in a small forested catchment (Panola Mountain, Georgia, USA): A comparison of the original and a new dynamic TOPMODEL

USGS Publications Warehouse

Peters, N.E.; Freer, J.; Beven, K.

2003-01-01

Preliminary modelling results for a new version of the rainfall-runoff model TOPMODEL, dynamic TOPMODEL, are compared with those of the original TOPMODEL formulation for predicting streamflow at the Panola Mountain Research Watershed, Georgia. Dynamic TOPMODEL uses a kinematic wave routing of subsurface flow, which allows for dynamically variable upslope contributing areas, while retaining the concept of hydrological similarity to increase computational efficiency. Model performance in predicting discharge was assessed for the original TOPMODEL and for one landscape unit (LU) and three LU versions of the dynamic TOPMODEL (a bare rock area, hillslope with regolith <1 m, and a riparian zone with regolith ???5 m). All simulations used a 30 min time step for each of three water years. Each 1-LU model underpredicted the peak streamflow, and generally overpredicted recession streamflow during wet periods and underpredicted during dry periods. The difference between predicted recession streamflow generally was less for the dynamic TOPMODEL and smallest for the 3-LU model. Bayesian combination of results for different water years within the GLUE methodology left no behavioural original or 1-LU dynamic models and only 168 (of 96 000 sample parameter sets) for the 3-LU model. The efficiency for the streamflow prediction of the best 3-LU model was 0.83 for an individual year, but the results suggest that further improvements could be made. ?? 2003 John Wiley & Sons, Ltd.

The Williams' legacy: A critical reappraisal of his nine predictions about the evolution of senescence.

PubMed

Gaillard, Jean-Michel; Lemaître, Jean-François

2017-12-01

Williams' evolutionary theory of senescence based on antagonistic pleiotropy has become a landmark in evolutionary biology, and more recently in biogerontology and evolutionary medicine. In his original article, Williams launched a set of nine "testable deductions" from his theory. Although some of these predictions have been repeatedly discussed, most have been overlooked and no systematic evaluation of the whole set of Williams' original predictions has been performed. For the sixtieth anniversary of the publication of the Williams' article, we provide an updated evaluation of all these predictions. We present the pros and cons of each prediction based on recent accumulation of both theoretical and empirical studies performed in the laboratory and in the wild. From our viewpoint, six predictions are mostly supported by our current knowledge at least under some conditions (although Williams' theory cannot thoroughly explain why for some of them). Three predictions, all involving the timing of senescence, are not supported. Our critical review of Williams' predictions highlights the importance of William's contribution and clearly demonstrates that, 60 years after its publication, his article does not show any sign of senescence. © 2017 The Author(s). Evolution © 2017 The Society for the Study of Evolution.

Psychometric properties of the Social Problem Solving Inventory-Revised Short-Form in a South African population.

PubMed

Sorsdahl, Katherine; Stein, Dan J; Myers, Bronwyn

2017-04-01

The Social Problem Solving Inventory-Revised Short-Form (SPSI-R:SF) has been used in several countries to identify problem-solving deficits among clinical and general populations in order to guide cognitive-behavioural interventions. Yet, very few studies have evaluated its psychometric properties. Three language versions of the questionnaire were administered to a general population sample comprising 1000 participants (771 English-, 178 Afrikaans- and 101 Xhosa-speakers). Of these participants, 210 were randomly selected to establish test-retest reliability (70 in each language). Principal component analysis was performed to examine the applicability of the factor structure of the original questionnaire to the South African data. Supplementary psychometric analyses were performed, including internal consistency and test-retest reliability. Collectively, results provide initial evidence of the reliability and validity of the SPSI-R:SF for the assessment of problem solving deficits in South Africa. Further studies that explore how the Afrikaans language version of the SPSI-R:SF can be improved and that establish the predictive validity of scores on the SPSI-R:SF are needed. © 2015 International Union of Psychological Science.

DOE Office of Scientific and Technical Information (OSTI.GOV)

Singh, Sadanand; Pablo, Juan J. de

Recently, novel organic glassy materials that exhibit remarkable stability have been prepared by vapor deposition. The thermophysical properties of these new ''stable'' glasses are equivalent to those that common glasses would exhibit after aging over periods lasting thousands of years. The origin of such enhanced stability has been elusive; in the absence of detailed models, past studies have discussed the formation of new polyamorphs or that of nanocrystals to explain the observed behavior. In this work, an atomistic molecular model of trehalose, a disaccharide of glucose, is used to examine the properties of vapor-deposited stable glasses. Consistent with experiment, themore » model predicts the formation of stable glasses having a higher density, a lower enthalpy, and higher onset temperatures than those of the corresponding ''ordinary'' glass formed by quenching the bulk liquid. Simulations reveal that newly formed layers of the growing vapor-deposited film exhibit greater mobility than the remainder of the material, thereby enabling a reorganization of the film as it is grown. They also reveal that ''stable'' glasses exhibit a distinct layered structure in the direction normal to the substrate that is responsible for their unusual properties.« less

Cosmological flux noise and measured noise power spectra in SQUIDs

PubMed Central

Beck, Christian

2016-01-01

The understanding of the origin of 1/f magnetic flux noise commonly observed in superconducting devices such as SQUIDs and qubits is still a major unsolved puzzle. Here we discuss the possibility that a significant part of the observed low-frequency flux noise measured in these devices is ultimately seeded by cosmological fluctuations. We consider a theory where a primordial flux noise field left over in unchanged form from an early inflationary or quantum gravity epoch of the universe intrinsically influences the phase difference in SQUIDs and qubits. The perturbation seeds generated by this field can explain in a quantitatively correct way the form and amplitude of measured low-frequency flux noise spectra in SQUID devices if one takes as a source of fluctuations the primordial power spectrum of curvature fluctuations as measured by the Planck collaboration. Our theoretical predictions are in excellent agreement with recent low-frequency flux noise measurements of various experimental groups. Magnetic flux noise, so far mainly considered as a nuisance for electronic devices, may thus contain valuable information about fluctuation spectra in the very early universe. PMID:27320418

Ab-Initio Calculation of Electronic Structure of Lead Halide Perovskites with Formamidinium Cation as an Active Material for Perovskite Solar Cells

NASA Astrophysics Data System (ADS)

Indari, E. D.; Wungu, T. D. K.; Hidayat, R.

2017-07-01

Organic lead halide perovskite material based solar cells show impressive power conversion efficiencies, which can reach above 19 percent for perovskite solar cell with methyl-ammonium cations. These efficiencies are originated from efficient photoexcitation and charge carrier transport and not observed in conventional perovskite crystals. In this preliminary research work, we therefore performed Density Functional Theory (DFT) calculation of formamidinium lead iodide (FAPI), an alternative to methyl-ammonium lead iodide (MAPI), to predict their electronic structure and density of state (DOS). The calculation result at the most stable lattice parameters show a good agreement with the experiment results. The obtained band gap energy is 1.307 eV. The valence band is dominantly formed by the 5p orbitals of I- anions, while the conduction band is dominantly formed by the 6p orbitals of Pb2+ cations. The DOS of valence band of this perovskite seems smaller compared to the case of methyl-ammonium lead iodide perovskite, which then may explain the observation of smaller power conversion efficiencies in perovskite solar cells with this formamidinium cations.

Core formation in the shergottite parent body and comparison with the earth

NASA Technical Reports Server (NTRS)

Treiman, Allan H.; Jones, John H.; Drake, Michael J.

1987-01-01

Abundances of elements in shergottite, nakhlite, and Chassigny meteorites which originated on a single planet, the shergottite parent body (SPB), were examined with the aim of elucidating the chemical conditions of metal separation and core formation in the SPB and of testing present models of planetary core formation. Using partition coefficients and the SPB mantle composition determined in earlier studies, the abundances of Ag, Au, Co, Ga, Mo, Ni, P, Re, S, and W were modeled, with free parameters being oxygen fugacity, proportion of solid metal formed, proportion of metallic liquid formed, and proportion of silicate that is molten. It is shown that the abundances of all elements (except Mo) could be reproduced using models with these four free parameters. In contrast to the SPB, an equivalent model used to predict element abundances in the earth's mantle was shown by Jones and Drake (1986) to be inadequate; there is at present no hypothesis capable of quantitatively reproducing the elemental abundances of the earth's mantle. The contrast suggests that these two terrestrial planets (assuming that the SPB is Mars) may have accreted or differentiated differently.

The Study on Grinding Ratio in Form Grinding with White Fused Alumina (WA) Grinding Wheels

NASA Astrophysics Data System (ADS)

Junming, Wang; Jiong, Wang; Deyuan, Lou

2018-03-01

The study is carried out based on an experiment of form grinding spur rack with white fused alumina (WA) grinding wheels. In the experiment, SOV-3020A type tri-axial image mapper is utilized to measure the profile of the tooth space in the rack, and the curve equations between the sectional area of the tooth space and the tooth sequence under different grinding depths are established by nonlinear curve regress using software of origin8.0. Then, it deduces the prediction equations for current grinding ratio and cumulative grinding ratio under different grinding depths. The result shows that the grinding ratio is exponential decline relationship with the increase of the number of the tooth to be ground under the same grinding depth, and the decline speed is fast in the initial stage. With the increase of grinding depth, the grinding ratio increases gradually. The cumulative grinding ratio is about twice as high as the current grinding ratio. Thus, large grinding depth is generally used in rough grinding to improve grinding efficiency.

Cosmological flux noise and measured noise power spectra in SQUIDs.

PubMed

Beck, Christian

2016-06-20

The understanding of the origin of 1/f magnetic flux noise commonly observed in superconducting devices such as SQUIDs and qubits is still a major unsolved puzzle. Here we discuss the possibility that a significant part of the observed low-frequency flux noise measured in these devices is ultimately seeded by cosmological fluctuations. We consider a theory where a primordial flux noise field left over in unchanged form from an early inflationary or quantum gravity epoch of the universe intrinsically influences the phase difference in SQUIDs and qubits. The perturbation seeds generated by this field can explain in a quantitatively correct way the form and amplitude of measured low-frequency flux noise spectra in SQUID devices if one takes as a source of fluctuations the primordial power spectrum of curvature fluctuations as measured by the Planck collaboration. Our theoretical predictions are in excellent agreement with recent low-frequency flux noise measurements of various experimental groups. Magnetic flux noise, so far mainly considered as a nuisance for electronic devices, may thus contain valuable information about fluctuation spectra in the very early universe.

Early Prediction of Intensive Care Unit-Acquired Weakness: A Multicenter External Validation Study.

PubMed

Witteveen, Esther; Wieske, Luuk; Sommers, Juultje; Spijkstra, Jan-Jaap; de Waard, Monique C; Endeman, Henrik; Rijkenberg, Saskia; de Ruijter, Wouter; Sleeswijk, Mengalvio; Verhamme, Camiel; Schultz, Marcus J; van Schaik, Ivo N; Horn, Janneke

2018-01-01

An early diagnosis of intensive care unit-acquired weakness (ICU-AW) is often not possible due to impaired consciousness. To avoid a diagnostic delay, we previously developed a prediction model, based on single-center data from 212 patients (development cohort), to predict ICU-AW at 2 days after ICU admission. The objective of this study was to investigate the external validity of the original prediction model in a new, multicenter cohort and, if necessary, to update the model. Newly admitted ICU patients who were mechanically ventilated at 48 hours after ICU admission were included. Predictors were prospectively recorded, and the outcome ICU-AW was defined by an average Medical Research Council score <4. In the validation cohort, consisting of 349 patients, we analyzed performance of the original prediction model by assessment of calibration and discrimination. Additionally, we updated the model in this validation cohort. Finally, we evaluated a new prediction model based on all patients of the development and validation cohort. Of 349 analyzed patients in the validation cohort, 190 (54%) developed ICU-AW. Both model calibration and discrimination of the original model were poor in the validation cohort. The area under the receiver operating characteristics curve (AUC-ROC) was 0.60 (95% confidence interval [CI]: 0.54-0.66). Model updating methods improved calibration but not discrimination. The new prediction model, based on all patients of the development and validation cohort (total of 536 patients) had a fair discrimination, AUC-ROC: 0.70 (95% CI: 0.66-0.75). The previously developed prediction model for ICU-AW showed poor performance in a new independent multicenter validation cohort. Model updating methods improved calibration but not discrimination. The newly derived prediction model showed fair discrimination. This indicates that early prediction of ICU-AW is still challenging and needs further attention.

On the luminosity function, lifetimes, and origin of blue stragglers in globular clusters

NASA Technical Reports Server (NTRS)

Bailyn, Charles D.; Pinsonneault, Marc H.

1995-01-01

We compute theoretical evolutionary tracks of blue stragglers created by mergers. Two formation scenarios are considered: mergers of primordial binaries, and stellar collisions. These two scenarios predict strikingly different luminosity functions, which are potentially distinguishable observationally. Tabulated theoretical luminosity functions and lifetimes are presented for blue stragglers formed under a variety of input conditions. We compare our results with observations of the blue straggler sequences in 47 Tucanae and M3. In the case of 47 Tuc, the luminosity function and the formation rate are compatible with the hypothesis that the blue stragglers formed through the collision of single stars. Mergers of primordial binaries are only marginally cosistent with the data, and a significant enhancement of the collision cross section by binary-single-star encounters appears to be ruled out. In the case of M3, we find that the innermost blue stragglers have a luminosity function significantly different from that of the outer stragglers, thus confirming earlier suggestions that there are two distinct populations of blue stragglers in this cluster. The inner stragglers are preferentially brighter and bluer, as would be expected if they were made by collisions, but there are so many of them that the collision rate would need to be enhanced by interactions involving wide binaries. The luminosity function of the outer stragglers is almost identical to the predictions of mergers from primordial binaries and is inconsistent with the collision hypothesis.

How the tooth got its stripes: patterning via strain-cued motility

PubMed Central

Cox, Brian N.

2013-01-01

We hypothesize that a population of migrating cells can form patterns when changes in local strains owing to relative cell motions induce changes in cell motility. That the mechanism originates in competing rates of motion distinguishes it from mechanisms involving strain energy gradients, e.g. those generated by surface energy effects or eigenstrains among cells, and diffusion–reaction mechanisms involving chemical signalling factors. The theory is tested by its ability to reproduce the morphological characteristics of enamel in the mouse incisor. Dental enamel is formed during amelogenesis by a population of ameloblasts that move about laterally within an expanding curved sheet, subject to continuously evolving spatial and temporal gradients in strain. Discrete-cell simulations of this process compute the changing strain environment of all cells and predict cell trajectories by invoking simple rules for the motion of an individual cell in response to its strain environment. The rules balance a tendency for cells to enhance relative sliding motion against a tendency to maintain uniform cell–cell separation. The simulations account for observed waviness in the enamel microstructure, the speed and shape of the ‘commencement front’ that separates domains of migrating secretory-stage ameloblasts from those that are not yet migrating, the initiation and sustainment of layered, fracture-resistant decussation patterns (cross-plied microstructure) and the transition from decussating inner enamel to non-decussating outer enamel. All these characteristics can be correctly predicted with the use of a single scalar adjustable parameter. PMID:23614945

The Dual Origin Of The Nitrogen Deficiency In Comets: Selective Volatile Trapping In The Nebula And Postaccretion Radiogenic Heating

NASA Astrophysics Data System (ADS)

Mousis, Olivier; Guilbert-Lepoutre, A.; Lunine, J. I.; Cochran, A. L.; Waite, J. H.; Petit, J.; Rousselot, P.

2012-10-01

We propose a scenario that explains the apparent nitrogen deficiency in comets in a way consistent with the presence of this molecule in the atmospheres of Pluto and Triton. We use a statistical thermodynamic model to investigate the composition of the successive multiple guest clathrates that may have formed during the cooling of the primordial nebula from the most abundant volatiles present in the gas phase. These clathrates agglomerated with the other ices (pure condensates or stoechiometric hydrates) and formed the building blocks of comets. We report that molecular nitrogen is a poor clathrate former, when we consider a plausible gas phase composition of the primordial nebula. This implies that its trapping into cometesimals requires a low disk temperature (about 20 K) in order to allow the formation of its pure condensate. We find that it is possible to explain the lack of molecular nitrogen in comets as a consequence of their postformation internal heating engendered by the decay of radiogenic nuclides. This scenario is found to be consistent with the presence of nitrogen-rich atmospheres around Pluto and Triton. Our model predicts that comets should present xenon-to-water and krypton-to-water ratios close to solar xenon-to-oxygen and krypton-to-oxygen ratios, respectively. In contrast, the argon-to-water ratio is predicted to be depleted by a factor of about 300 in comets compared to solar argon-to-oxygen, as a consequence of the nitrogen outgassing.

A real-time architecture for time-aware agents.

PubMed

Prouskas, Konstantinos-Vassileios; Pitt, Jeremy V

2004-06-01

This paper describes the specification and implementation of a new three-layer time-aware agent architecture. This architecture is designed for applications and environments where societies of humans and agents play equally active roles, but interact and operate in completely different time frames. The architecture consists of three layers: the April real-time run-time (ART) layer, the time aware layer (TAL), and the application agents layer (AAL). The ART layer forms the underlying real-time agent platform. An original online, real-time, dynamic priority-based scheduling algorithm is described for scheduling the computation time of agent processes, and it is shown that the algorithm's O(n) complexity and scalable performance are sufficient for application in real-time domains. The TAL layer forms an abstraction layer through which human and agent interactions are temporally unified, that is, handled in a common way irrespective of their temporal representation and scale. A novel O(n2) interaction scheduling algorithm is described for predicting and guaranteeing interactions' initiation and completion times. The time-aware predicting component of a workflow management system is also presented as an instance of the AAL layer. The described time-aware architecture addresses two key challenges in enabling agents to be effectively configured and applied in environments where humans and agents play equally active roles. It provides flexibility and adaptability in its real-time mechanisms while placing them under direct agent control, and it temporally unifies human and agent interactions.

Geologic age: using radioactive decay to determine geologic age

USGS Publications Warehouse

,

1997-01-01

At the close of the 18th century, the haze of fantasy and mysticism that tended to obscure the true nature of the Earth was being swept away. Careful studies by scientists showed that rocks had diverse origins. Some rock layers, containing clearly identifiable fossil remains of fish and other forms of aquatic animal and plant life, originally formed in the ocean. Other layers, consisting of sand grains winnowed clean by the pounding surf, obviously formed as beach deposits that marked the shorelines of ancient seas. Certain layers are in the form of sand bars and gravel banks -- rock debris spread over the land by streams. Some rocks were once lava flows or beds of cinders and ash thrown out of ancient volcanoes; others are portions of large masses of once-molten rock that cooled very slowly far beneath the Earth's surface. Other rocks were so transformed by heat and pressure during the heaving and buckling of the Earth's crust in periods of mountain building that their original features were obliterated.

Origin and Evolution of Water Oxidation before the Last Common Ancestor of the Cyanobacteria

PubMed Central

Cardona, Tanai; Murray, James W.; Rutherford, A. William

2015-01-01

Photosystem II, the water oxidizing enzyme, altered the course of evolution by filling the atmosphere with oxygen. Here, we reconstruct the origin and evolution of water oxidation at an unprecedented level of detail by studying the phylogeny of all D1 subunits, the main protein coordinating the water oxidizing cluster (Mn4CaO5) of Photosystem II. We show that D1 exists in several forms making well-defined clades, some of which could have evolved before the origin of water oxidation and presenting many atypical characteristics. The most ancient form is found in the genome of Gloeobacter kilaueensis JS-1 and this has a C-terminus with a higher sequence identity to D2 than to any other D1. Two other groups of early evolving D1 correspond to those expressed under prolonged far-red illumination and in darkness. These atypical D1 forms are characterized by a dramatically different Mn4CaO5 binding site and a Photosystem II containing such a site may assemble an unconventional metal cluster. The first D1 forms with a full set of ligands to the Mn4CaO5 cluster are grouped with D1 proteins expressed only under low oxygen concentrations and the latest evolving form is the dominant type of D1 found in all cyanobacteria and plastids. In addition, we show that the plastid ancestor had a D1 more similar to those in early branching Synechococcus. We suggest each one of these forms of D1 originated from transitional forms at different stages toward the innovation and optimization of water oxidation before the last common ancestor of all known cyanobacteria. PMID:25657330

Origin and Evolution of Water Oxidation before the Last Common Ancestor of the Cyanobacteria.

PubMed

Cardona, Tanai; Murray, James W; Rutherford, A William

2015-05-01

Photosystem II, the water oxidizing enzyme, altered the course of evolution by filling the atmosphere with oxygen. Here, we reconstruct the origin and evolution of water oxidation at an unprecedented level of detail by studying the phylogeny of all D1 subunits, the main protein coordinating the water oxidizing cluster (Mn4CaO5) of Photosystem II. We show that D1 exists in several forms making well-defined clades, some of which could have evolved before the origin of water oxidation and presenting many atypical characteristics. The most ancient form is found in the genome of Gloeobacter kilaueensis JS-1 and this has a C-terminus with a higher sequence identity to D2 than to any other D1. Two other groups of early evolving D1 correspond to those expressed under prolonged far-red illumination and in darkness. These atypical D1 forms are characterized by a dramatically different Mn4CaO5 binding site and a Photosystem II containing such a site may assemble an unconventional metal cluster. The first D1 forms with a full set of ligands to the Mn4CaO5 cluster are grouped with D1 proteins expressed only under low oxygen concentrations and the latest evolving form is the dominant type of D1 found in all cyanobacteria and plastids. In addition, we show that the plastid ancestor had a D1 more similar to those in early branching Synechococcus. We suggest each one of these forms of D1 originated from transitional forms at different stages toward the innovation and optimization of water oxidation before the last common ancestor of all known cyanobacteria. © The Author 2015. Published by Oxford University Press on behalf of the Society for Molecular Biology and Evolution.

Development and validation of a cancer-specific swallowing assessment tool: MASA-C.

PubMed

Carnaby, Giselle D; Crary, Michael A

2014-03-01

We present data from a sample of patients receiving radiotherapy for head/neck cancer to define and measure the validity of a new clinical assessment measure for swallowing. Fifty-eight patients undergoing radiotherapy (±chemotherapy) for head/neck cancer (HNC) supported the development of a physiology-based assessment tool of swallowing (Mann Assessment of Swallowing Ability--Cancer: MASA-C) administered at two time points (baseline and following radiotherapy treatment). The new exam was evaluated for internal consistency of items using Cronbach's alpha. Reliability of measurement was evaluated with intraclass correlation (ICC) and the Kappa statistic between two independent raters. Concurrent validity was established through comparison with the original MASA examination and against the referent standard videofluoroscopic swallowing examination (VFE). Sensitivity, specificity, and likelihood ratios along with 95 % confidence intervals (CIs) were derived for comparison of the two evaluation forms (MASA vs. MASA-C). Accuracy of diagnostic precision was displayed using receiver operator characteristic curves. The new MASA-C tool demonstrated superior validity to the original MASA examination applied to a HNC population. In comparison to the VFE referent exam, the MASA-C revealed strong sensitivity and specificity (Se 83, Sp 96), predictive values (positive predictive value (PPV) 0.95, negative predictive value (NPV) 0.86), and likelihood ratios (21.6). In addition, it demonstrated good reliability (ICC = 0.96) between speech-language pathology raters. The MASA-C is a reliable and valid scale that is sensitive to differences in swallowing performance in HNC patients with and without dysphagia. Future longitudinal evaluation of this tool in larger samples is suggested. The development and refinement of this swallowing assessment tool for use in multidisciplinary HNC teams will facilitate earlier identification of patients with swallowing difficulties and enable more efficient allocation of resources to the management of dysphagia in this population. The MASA-C may also prove useful in future clinical HNC rehabilitation trials with this population.

Quantum correlations are weaved by the spinors of the Euclidean primitives

PubMed Central

2018-01-01

The exceptional Lie group E8 plays a prominent role in both mathematics and theoretical physics. It is the largest symmetry group associated with the most general possible normed division algebra, namely, that of the non-associative real octonions, which—thanks to their non-associativity—form the only possible closed set of spinors (or rotors) that can parallelize the 7-sphere. By contrast, here we show how a similar 7-sphere also arises naturally from the algebraic interplay of the graded Euclidean primitives, such as points, lines, planes and volumes, which characterize the three-dimensional conformal geometry of the ambient physical space, set within its eight-dimensional Clifford-algebraic representation. Remarkably, the resulting algebra remains associative, and allows us to understand the origins and strengths of all quantum correlations locally, in terms of the geometry of the compactified physical space, namely, that of a quaternionic 3-sphere, S3, with S7 being its algebraic representation space. Every quantum correlation can thus be understood as a correlation among a set of points of this S7, computed using manifestly local spinors within S3, thereby extending the stringent bounds of ±2 set by Bell inequalities to the bounds of ±22 on the strengths of all possible strong correlations, in the same quantitatively precise manner as that predicted within quantum mechanics. The resulting geometrical framework thus overcomes Bell’s theorem by producing a strictly deterministic and realistic framework that allows a locally causal understanding of all quantum correlations, without requiring either remote contextuality or backward causation. We demonstrate this by first proving a general theorem concerning the geometrical origins of the correlations predicted by arbitrarily entangled quantum states, and then reproducing the correlations predicted by the EPR-Bohm and the GHZ states. The raison d’être of strong correlations turns out to be the Möbius-like twists in the Hopf bundles of S3 and S7. PMID:29893385

Exploring a Common Origin for Slow Slip and Tremor in Cascadia

NASA Astrophysics Data System (ADS)

Szeliga, W. M.; Melbourne, T. I.; Tahtinen, H.

2013-12-01

The close spatial and temporal proximity of many slow faulting phenomena has led to the hypothesis that they are manifestations of a common process. However, the exact nature of this common process is unknown and forms a framework for basic questions about the relationship between episodic tremor and slip. To investigate the possibility of a common origin for tremor and slow slip, we attempt to use one phenomena to describe the other, by using existing catalogs of tremor location and duration to predict geodetically observable surface deformation. Our surface deformation predictions are constructed by assuming that each burst of tremor occurs at the epicenter listed in the catalog, and is assigned a hypocentral depth corresponding to the most current knowledge of the location of the plate interface. Each tremor burst is modeled as a purely dip slip elastic point source dislocation with a moment linearly proportional to duration. The resulting displacement, tilt and strain time series faithfully reproduce observations of the 2010 ETS event along the Cascadia margin, with the exception of observations immediately above the line separating uplift from subsidence. Along this line, which runs N-S through the Straits of Juan de Fuca near Sequim, predicted displacements are uniquely sensitive to the precise location of tremor. We present evidence that, in order to satisfy the surface observations everywhere as well as tremor timing, displacement along the plate interface must occur upwards of 20 km up-dip of catalog tremor locations. At least two interpretations for this requirement are possible: 1. that existing algorithms for tremor epicentral location are systematically biased or 2. that tremor and slip occur simultaneously at different, but nearby, locations on the plate interface. Further, we present evidence that previously estimated coefficients for duration-versus-moment scaling relationships have been overestimated by a factor of 3.

Visual form predictions facilitate auditory processing at the N1.

PubMed

Paris, Tim; Kim, Jeesun; Davis, Chris

2017-02-20

Auditory-visual (AV) events often involve a leading visual cue (e.g. auditory-visual speech) that allows the perceiver to generate predictions about the upcoming auditory event. Electrophysiological evidence suggests that when an auditory event is predicted, processing is sped up, i.e., the N1 component of the ERP occurs earlier (N1 facilitation). However, it is not clear (1) whether N1 facilitation is based specifically on predictive rather than multisensory integration and (2) which particular properties of the visual cue it is based on. The current experiment used artificial AV stimuli in which visual cues predicted but did not co-occur with auditory cues. Visual form cues (high and low salience) and the auditory-visual pairing were manipulated so that auditory predictions could be based on form and timing or on timing only. The results showed that N1 facilitation occurred only for combined form and temporal predictions. These results suggest that faster auditory processing (as indicated by N1 facilitation) is based on predictive processing generated by a visual cue that clearly predicts both what and when the auditory stimulus will occur. Copyright © 2016. Published by Elsevier Ltd.

75 FR 28276 - Agency Information Collection Activities: NAFTA Regulations and Certificate of Origin

Federal Register 2010, 2011, 2012, 2013, 2014

2010-05-20

... Review: Revision. Affected Public: Businesses. Form 434, NAFTA Certificate of Origin: Estimated Number of... Activities: NAFTA Regulations and Certificate of Origin AGENCY: U.S. Customs and Border Protection... Homeland Security has submitted the following information collection request to the Office of Management...

7 CFR 65.400 - Labeling.

Code of Federal Regulations, 2013 CFR

2013-01-01

... AGRICULTURAL MARKETING ACT OF 1946 AND THE EGG PRODUCTS INSPECTION ACT (CONTINUED) COUNTRY OF ORIGIN LABELING..., PEANUTS, AND GINSENG General Provisions Country of Origin Notification § 65.400 Labeling. (a) Country of origin declarations can either be in the form of a placard, sign, label, sticker, band, twist tie, pin...

7 CFR 65.400 - Labeling.

Code of Federal Regulations, 2012 CFR

2012-01-01

... AGRICULTURAL MARKETING ACT OF 1946 AND THE EGG PRODUCTS INSPECTION ACT (CONTINUED) COUNTRY OF ORIGIN LABELING..., PEANUTS, AND GINSENG General Provisions Country of Origin Notification § 65.400 Labeling. (a) Country of origin declarations can either be in the form of a placard, sign, label, sticker, band, twist tie, pin...

7 CFR 65.400 - Labeling.

Code of Federal Regulations, 2014 CFR

2014-01-01

... AGRICULTURAL MARKETING ACT OF 1946 AND THE EGG PRODUCTS INSPECTION ACT (CONTINUED) COUNTRY OF ORIGIN LABELING..., PEANUTS, AND GINSENG General Provisions Country of Origin Notification § 65.400 Labeling. (a) Country of origin declarations can either be in the form of a placard, sign, label, sticker, band, twist tie, pin...

Structural changes in Mcm5 protein bypass Cdc7-Dbf4 function and reduce replication origin efficiency in Saccharomyces cerevisiae.

PubMed

Hoang, Margaret L; Leon, Ronald P; Pessoa-Brandao, Luis; Hunt, Sonia; Raghuraman, M K; Fangman, Walton L; Brewer, Bonita J; Sclafani, Robert A

2007-11-01

Eukaryotic chromosomal replication is a complicated process with many origins firing at different efficiencies and times during S phase. Prereplication complexes are assembled on all origins in G(1) phase, and yet only a subset of complexes is activated during S phase by DDK (for Dbf4-dependent kinase) (Cdc7-Dbf4). The yeast mcm5-bob1 (P83L) mutation bypasses DDK but results in reduced intrinsic firing efficiency at 11 endogenous origins and at origins located on minichromosomes. Origin efficiency may result from Mcm5 protein assuming an altered conformation, as predicted from the atomic structure of an archaeal MCM (for minichromosome maintenance) homologue. Similarly, an intragenic mutation in a residue predicted to interact with P83L suppresses the mcm5-bob1 bypass phenotype. We propose DDK phosphorylation of the MCM complex normally results in a single, highly active conformation of Mcm5, whereas the mcm5-bob1 mutation produces a number of conformations, only one of which is permissive for origin activation. Random adoption of these alternate states by the mcm5-bob1 protein can explain both how origin firing occurs independently of DDK and why origin efficiency is reduced. Because similar mutations in mcm2 and mcm4 cannot bypass DDK, Mcm5 protein may be a unique Mcm protein that is the final target of DDK regulation.

Two challenges in embedded systems design: predictability and robustness.

PubMed

Henzinger, Thomas A

2008-10-28

I discuss two main challenges in embedded systems design: the challenge to build predictable systems, and that to build robust systems. I suggest how predictability can be formalized as a form of determinism, and robustness as a form of continuity.

Surface roughness formation during shot peen forming

NASA Astrophysics Data System (ADS)

Koltsov, V. P.; Vinh, Le Tri; Starodubtseva, D. A.

2018-03-01

Shot peen forming (SPF) is used for forming panels and skins, and for hardening. As a rule, shot peen forming is performed after milling. Surface roughness is a complex structure, a combination of an original microrelief and shot peen forming indentations of different depths and chaotic distribution along the surface. As far as shot peen forming is a random process, surface roughness resulted from milling and shot peen forming is random too. During roughness monitoring, it is difficult to determine the basic surface area which would ensure accurate results. It can be assumed that the basic area depends on the random roughness which is characterized by the degree of shot peen forming coverage. The analysis of depth and shot peen forming indentations distribution along the surface made it possible to identify the shift of an original center profile plane and create a mathematical model for the arithmetic mean deviation of the profile. Experimental testing proved model validity and determined an inversely proportional dependency of the basic area on the degree of coverage.

The long, the short and the weak: the origin of gamma-ray bursts.

PubMed

Piran, Tsvi; Bromberg, Omer; Nakar, Ehud; Sari, Re'em

2013-06-13

The origin of gamma-ray bursts (GRBs) is one of the most interesting puzzles in recent astronomy. During the last decade a consensus has formed that long GRBs (LGRBs) arise from the collapse of massive stars, and that short GRBs (SGRBs) have a different origin, most likely neutron star mergers. A key ingredient of the collapsar model that explains how the collapse of massive stars produces a GRB is the emergence of a relativistic jet that penetrates the stellar envelope. The condition that the emerging jet penetrates the envelope imposes strong constraints on the system. Using these constraints we show the following. (i) Low-luminosity GRBs (llGRBs), a subpopulation of GRBs with very low luminosities (and other peculiar properties: single-peaked, smooth and soft), cannot be formed by collapsars. llGRBs must have a different origin (most likely a shock breakout). (ii) On the other hand, regular LGRBs must be formed by collapsars. (iii) While for BATSE the dividing line between collapsars and non-collapsars is indeed at approximately 2 s, the dividing line is different for other GRB detectors. In particular, most Swift bursts longer than 0.8 s are of a collapsar origin. This last result requires a revision of many conclusions concerning the origin of Swift SGRBs, which were based on the commonly used 2 s limit.

Atomic scale origins of sub-band gap optical absorption in gold-hyperdoped silicon

NASA Astrophysics Data System (ADS)

Ferdous, Naheed; Ertekin, Elif

2018-05-01

Gold hyperdoped silicon exhibits room temperature sub band gap optical absorption, with potential applications as infrared absorbers/detectors and impurity band photovoltaics. We use first-principles density functional theory to establish the origins of the sub band gap response. Substitutional gold AuSi and substitutional dimers AuSi - AuSi are found to be the energetically preferred defect configurations, and AuSi gives rise to partially filled mid-gap defect bands well offset from the band edges. AuSi is predicted to offer substantial sub-band gap absorption, exceeding that measured in prior experiments by two orders of magnitude for similar Au concentration. This suggests that in experimentally realized systems, in addition to AuSi, the implanted gold is accommodated by the lattice in other ways, including other defect complexes and gold precipitates. We further identify that it is energetically favorable for isolated AuSi to form AuSi - AuSi, which by contrast do not exhibit mid-gap states. The formation of dimers and other complexes could serve as nuclei in the earliest stages of Au precipitation, which may be responsible for the observed rapid deactivation of sub-band gap response upon annealing.

Insect flight on fluid interfaces: a chaotic interfacial oscillator

NASA Astrophysics Data System (ADS)

Mukundarajan, Haripriya; Prakash, Manu

2013-11-01

Flight is critical to the dominance of insect species on our planet, with about 98 percent of insect species having wings. How complex flight control systems developed in insects is unknown, and arboreal or aquatic origins have been hypothesized. We examine the biomechanics of aquatic origins of flight. We recently reported discovery of a novel mode of ``2D flight'' in Galerucella beetles, which skim along an air-water interface using flapping wing flight. This unique flight mode is characterized by a balance between capillary forces from the interface and biomechanical forces exerted by the flapping wings. Complex interactions on the fluid interface form capillary wave trains behind the insect, and produce vertical oscillations at the surface due to non-linear forces arising from deformation of the fluid meniscus. We present both experimental observations of 2D flight kinematics and a dynamic model explaining the observed phenomena. Careful examination of this interaction predicts the chaotic nature of interfacial flight and takeoff from the interface into airborne flight. The role of wingbeat frequency, stroke plane angle and body angle in determining transition between interfacial and fully airborne flight is highlighted, shedding light on the aquatic theory of flight evolution.

Experimental and Numerical Investigation of Vortical Structures in Lean Premixed Swirl-Stabilized Combustion

NASA Astrophysics Data System (ADS)

Taamallah, Soufien; Chakroun, Nadim; Shanbhogue, Santosh; Kewlani, Gaurav; Ghoniem, Ahmed

2015-11-01

A combined experimental and LES investigation is performed to identify the origin of major flow dynamics and vortical structures in a model gas turbine's swirl-stabilized turbulent combustor. Swirling flows in combustion lead to the formation of complex flow dynamics and vortical structures that can interact with flames and influence its stabilization. Our experimental results for non-reacting flow show the existence of large scale precession motion. The precessing vortex core (PVC) dynamics disappears with combustion but only above a threshold of equivalence ratio. In addition, large scale vortices along the inner shear layer (ISL) are observed. These structures interact with the ISL stabilized flame and contribute to its wrinkling. Next, the LES setup is validated against the flow field's low-order statistics and point temperature measurement in relevant areas of the chamber. Finally, we show that LES is capable of predicting the precession motion as well as the ISL vortices in the reacting case: we find that ISL vortices originate from a vortex core that is formed right downstream of the swirler's centerbody. The vortex core has a conical spiral shape resembling a corkscrew that interacts - as it winds out - with the flame when it reaches the ISL.

A study of life prediction differences for a nickel-base Alloy 690 using a threshold and a non-threshold model

NASA Astrophysics Data System (ADS)

Young, B. A.; Gao, Xiaosheng; Srivatsan, T. S.

2009-10-01

In this paper we compare and contrast the crack growth rate of a nickel-base superalloy (Alloy 690) in the Pressurized Water Reactor (PWR) environment. Over the last few years, a preponderance of test data has been gathered on both Alloy 690 thick plate and Alloy 690 tubing. The original model, essentially based on a small data set for thick plate, compensated for temperature, load ratio and stress-intensity range but did not compensate for the fatigue threshold of the material. As additional test data on both plate and tube product became available the model was gradually revised to account for threshold properties. Both the original and revised models generated acceptable results for data that were above 1 × 10 -11 m/s. However, the test data at the lower growth rates were over-predicted by the non-threshold model. Since the original model did not take the fatigue threshold into account, this model predicted no operating stress below which the material would effectively undergo fatigue crack growth. Because of an over-prediction of the growth rate below 1 × 10 -11 m/s, due to a combination of low stress, small crack size and long rise-time, the model in general leads to an under-prediction of the total available life of the components.

A systematic review of models to predict recruitment to multicentre clinical trials.

PubMed

Barnard, Katharine D; Dent, Louise; Cook, Andrew

2010-07-06

Less than one third of publicly funded trials managed to recruit according to their original plan often resulting in request for additional funding and/or time extensions. The aim was to identify models which might be useful to a major public funder of randomised controlled trials when estimating likely time requirements for recruiting trial participants. The requirements of a useful model were identified as usability, based on experience, able to reflect time trends, accounting for centre recruitment and contribution to a commissioning decision. A systematic review of English language articles using MEDLINE and EMBASE. Search terms included: randomised controlled trial, patient, accrual, predict, enroll, models, statistical; Bayes Theorem; Decision Theory; Monte Carlo Method and Poisson. Only studies discussing prediction of recruitment to trials using a modelling approach were included. Information was extracted from articles by one author, and checked by a second, using a pre-defined form. Out of 326 identified abstracts, only 8 met all the inclusion criteria. Of these 8 studies examined, there are five major classes of model discussed: the unconditional model, the conditional model, the Poisson model, Bayesian models and Monte Carlo simulation of Markov models. None of these meet all the pre-identified needs of the funder. To meet the needs of a number of research programmes, a new model is required as a matter of importance. Any model chosen should be validated against both retrospective and prospective data, to ensure the predictions it gives are superior to those currently used.

Evaluation of protein docking predictions using Hex 3.1 in CAPRI rounds 1 and 2.

PubMed

Ritchie, David W

2003-07-01

This article describes and reviews our efforts using Hex 3.1 to predict the docking modes of the seven target protein-protein complexes presented in the CAPRI (Critical Assessment of Predicted Interactions) blind docking trial. For each target, the structure of at least one of the docking partners was given in its unbound form, and several of the targets involved large multimeric structures (e.g., Lactobacillus HPr kinase, hemagglutinin, bovine rotavirus VP6). Here we describe several enhancements to our original spherical polar Fourier docking correlation algorithm. For example, a novel surface sphere smothering algorithm is introduced to generate multiple local coordinate systems around the surface of a large receptor molecule, which may be used to define a small number of initial ligand-docking orientations distributed over the receptor surface. High-resolution spherical polar docking correlations are performed over the resulting receptor surface patches, and candidate docking solutions are refined by using a novel soft molecular mechanics energy minimization procedure. Overall, this approach identified two good solutions at rank 5 or less for two of the seven CAPRI complexes. Subsequent analysis of our results shows that Hex 3.1 is able to place good solutions within a list of

Rapid Cycling Genomic Selection in a Multiparental Tropical Maize Population

PubMed Central

Zhang, Xuecai; Pérez-Rodríguez, Paulino; Burgueño, Juan; Olsen, Michael; Buckler, Edward; Atlin, Gary; Prasanna, Boddupalli M.; Vargas, Mateo; San Vicente, Félix; Crossa, José

2017-01-01

Genomic selection (GS) increases genetic gain by reducing the length of the selection cycle, as has been exemplified in maize using rapid cycling recombination of biparental populations. However, no results of GS applied to maize multi-parental populations have been reported so far. This study is the first to show realized genetic gains of rapid cycling genomic selection (RCGS) for four recombination cycles in a multi-parental tropical maize population. Eighteen elite tropical maize lines were intercrossed twice, and self-pollinated once, to form the cycle 0 (C0) training population. A total of 1000 ear-to-row C0 families was genotyped with 955,690 genotyping-by-sequencing SNP markers; their testcrosses were phenotyped at four optimal locations in Mexico to form the training population. Individuals from families with the best plant types, maturity, and grain yield were selected and intermated to form RCGS cycle 1 (C1). Predictions of the genotyped individuals forming cycle C1 were made, and the best predicted grain yielders were selected as parents of C2; this was repeated for more cycles (C2, C3, and C4), thereby achieving two cycles per year. Multi-environment trials of individuals from populations C0, C1, C2, C3, and C4, together with four benchmark checks were evaluated at two locations in Mexico. Results indicated that realized grain yield from C1 to C4 reached 0.225 ton ha−1 per cycle, which is equivalent to 0.100 ton ha−1 yr−1 over a 4.5-yr breeding period from the initial cross to the last cycle. Compared with the original 18 parents used to form cycle 0 (C0), genetic diversity narrowed only slightly during the last GS cycles (C3 and C4). Results indicate that, in tropical maize multi-parental breeding populations, RCGS can be an effective breeding strategy for simultaneously conserving genetic diversity and achieving high genetic gains in a short period of time. PMID:28533335

A formal anthropological view of motivation models of problematic MMO play: achievement, social, and immersion factors in the context of culture.

PubMed

Snodgrass, Jeffrey G; Dengah, H J Francois; Lacy, Michael G; Fagan, Jesse

2013-04-01

Yee (2006) found three motivational factors-achievement, social, and immersion-underlying play in massively multiplayer online role-playing games ("MMORPGs" or "MMOs" for short). Subsequent work has suggested that these factors foster problematic or addictive forms of play in online worlds. In the current study, we used an online survey of respondents (N = 252), constructed and also interpreted in reference to ethnography and interviews, to examine problematic play in the World of Warcraft (WoW; Blizzard Entertainment, 2004-2013). We relied on tools from psychological anthropology to reconceptualize each of Yee's three motivational factors in order to test for the possible role of culture in problematic MMO play: (a) For achievement, we examined how "cultural consonance" with normative understandings of success might structure problematic forms of play; (b) for social, we analyzed the possibility that developing overvalued virtual relationships that are cutoff from offline social interactions might further exacerbate problematic play; and (c) in relation to immersion, we examined how "dissociative" blurring of actual- and virtual-world identities and experiences might contribute to problematic patterns. Our results confirmed that compared to Yee's original motivational factors, these culturally sensitive measures better predict problematic forms of play, pointing to the important role of sociocultural factors in structuring online play.

Simulating Gamma-Ray Emission in Star-forming Galaxies

DOE Office of Scientific and Technical Information (OSTI.GOV)

Pfrommer, Christoph; Pakmor, Rüdiger; Simpson, Christine M.

Star-forming galaxies emit GeV and TeV gamma-rays that are thought to originate from hadronic interactions of cosmic-ray (CR) nuclei with the interstellar medium. To understand the emission, we have used the moving-mesh code Arepo to perform magnetohydrodynamical galaxy formation simulations with self-consistent CR physics. Our galaxy models exhibit a first burst of star formation that injects CRs at supernovae. Once CRs have sufficiently accumulated in our Milky Way–like galaxy, their buoyancy force overcomes the magnetic tension of the toroidal disk field. As field lines open up, they enable anisotropically diffusing CRs to escape into the halo and to accelerate amore » bubble-like, CR-dominated outflow. However, these bubbles are invisible in our simulated gamma-ray maps of hadronic pion-decay and secondary inverse-Compton emission because of low gas density in the outflows. By adopting a phenomenological relation between star formation rate (SFR) and far-infrared emission and assuming that gamma-rays mainly originate from decaying pions, our simulated galaxies can reproduce the observed tight relation between far-infrared and gamma-ray emission, independent of whether we account for anisotropic CR diffusion. This demonstrates that uncertainties in modeling active CR transport processes only play a minor role in predicting gamma-ray emission from galaxies. We find that in starbursts, most of the CR energy is “calorimetrically” lost to hadronic interactions. In contrast, the gamma-ray emission deviates from this calorimetric property at low SFRs due to adiabatic losses, which cannot be identified in traditional one-zone models.« less

Aerodynamic Performance and Static Stability at Mach Number 3.3 of an Aircraft Configuration Employing Three Triangular Wing Panels and a Body Equal Length

NASA Technical Reports Server (NTRS)

James, Carlton S.

1960-01-01

An aircraft configuration, previously conceived as a means to achieve favorable aerodynamic stability characteristics., high lift-drag ratio, and low heating rates at high supersonic speeds., was modified in an attempt to increase further the lift-drag ratio without adversely affecting the other desirable characteristics. The original configuration consisted of three identical triangular wing panels symmetrically disposed about an ogive-cylinder body equal in length to the root chord of the panels. This configuration was modified by altering the angular disposition of the wing panels, by reducing the area of the panel forming the vertical fin, and by reshaping the body to produce interference lift. Six-component force and moment tests of the modified configuration at combined angles of attack and sideslip were made at a Mach number of 3.3 and a Reynolds number of 5.46 million. A maximum lift-drag ratio of 6.65 (excluding base drag) was measured at a lift coefficient of 0.100 and an angle of attack of 3.60. The lift-drag ratio remained greater than 3 up to lift coefficient of 0.35. Performance estimates, which predicted a maximum lift-drag ratio for the modified configuration 27 percent greater than that of the original configuration, agreed well with experiment. The modified configuration exhibited favorable static stability characteristics within the test range. Longitudinal and directional centers of pressure were slightly aft of the respective centroids of projected plan-form and side area.

Resource scarcity drives lethal aggression among prehistoric hunter-gatherers in central California.

PubMed

Allen, Mark W; Bettinger, Robert Lawrence; Codding, Brian F; Jones, Terry L; Schwitalla, Al W

2016-10-25

The origin of human violence and warfare is controversial, and some scholars contend that intergroup conflict was rare until the emergence of sedentary foraging and complex sociopolitical organization, whereas others assert that violence was common and of considerable antiquity among small-scale societies. Here we consider two alternative explanations for the evolution of human violence: (i) individuals resort to violence when benefits outweigh potential costs, which is likely in resource poor environments, or (ii) participation in violence increases when there is coercion from leaders in complex societies leading to group level benefits. To test these hypotheses, we evaluate the relative importance of resource scarcity vs. sociopolitical complexity by evaluating spatial variation in three macro datasets from central California: (i) an extensive bioarchaeological record dating from 1,530 to 230 cal BP recording rates of blunt and sharp force skeletal trauma on thousands of burials, (ii) quantitative scores of sociopolitical complexity recorded ethnographically, and (iii) mean net primary productivity (NPP) from a remotely sensed global dataset. Results reveal that sharp force trauma, the most common form of violence in the record, is better predicted by resource scarcity than relative sociopolitical complexity. Blunt force cranial trauma shows no correlation with NPP or political complexity and may reflect a different form of close contact violence. This study provides no support for the position that violence originated with the development of more complex hunter-gatherer adaptations in the fairly recent past. Instead, findings show that individuals are prone to violence in times and places of resource scarcity.

Pathways for abiotic organic synthesis at submarine hydrothermal fields.

PubMed

McDermott, Jill M; Seewald, Jeffrey S; German, Christopher R; Sylva, Sean P

2015-06-23

Arguments for an abiotic origin of low-molecular weight organic compounds in deep-sea hot springs are compelling owing to implications for the sustenance of deep biosphere microbial communities and their potential role in the origin of life. Theory predicts that warm H2-rich fluids, like those emanating from serpentinizing hydrothermal systems, create a favorable thermodynamic drive for the abiotic generation of organic compounds from inorganic precursors. Here, we constrain two distinct reaction pathways for abiotic organic synthesis in the natural environment at the Von Damm hydrothermal field and delineate spatially where inorganic carbon is converted into bioavailable reduced carbon. We reveal that carbon transformation reactions in a single system can progress over hours, days, and up to thousands of years. Previous studies have suggested that CH4 and higher hydrocarbons in ultramafic hydrothermal systems were dependent on H2 generation during active serpentinization. Rather, our results indicate that CH4 found in vent fluids is formed in H2-rich fluid inclusions, and higher n-alkanes may likely be derived from the same source. This finding implies that, in contrast with current paradigms, these compounds may form independently of actively circulating serpentinizing fluids in ultramafic-influenced systems. Conversely, widespread production of formate by ΣCO2 reduction at Von Damm occurs rapidly during shallow subsurface mixing of the same fluids, which may support anaerobic methanogenesis. Our finding of abiogenic formate in deep-sea hot springs has significant implications for microbial life strategies in the present-day deep biosphere as well as early life on Earth and beyond.

Pathways for abiotic organic synthesis at submarine hydrothermal fields

PubMed Central

McDermott, Jill M.; Seewald, Jeffrey S.; German, Christopher R.; Sylva, Sean P.

2015-01-01

Arguments for an abiotic origin of low-molecular weight organic compounds in deep-sea hot springs are compelling owing to implications for the sustenance of deep biosphere microbial communities and their potential role in the origin of life. Theory predicts that warm H2-rich fluids, like those emanating from serpentinizing hydrothermal systems, create a favorable thermodynamic drive for the abiotic generation of organic compounds from inorganic precursors. Here, we constrain two distinct reaction pathways for abiotic organic synthesis in the natural environment at the Von Damm hydrothermal field and delineate spatially where inorganic carbon is converted into bioavailable reduced carbon. We reveal that carbon transformation reactions in a single system can progress over hours, days, and up to thousands of years. Previous studies have suggested that CH4 and higher hydrocarbons in ultramafic hydrothermal systems were dependent on H2 generation during active serpentinization. Rather, our results indicate that CH4 found in vent fluids is formed in H2-rich fluid inclusions, and higher n-alkanes may likely be derived from the same source. This finding implies that, in contrast with current paradigms, these compounds may form independently of actively circulating serpentinizing fluids in ultramafic-influenced systems. Conversely, widespread production of formate by ΣCO2 reduction at Von Damm occurs rapidly during shallow subsurface mixing of the same fluids, which may support anaerobic methanogenesis. Our finding of abiogenic formate in deep-sea hot springs has significant implications for microbial life strategies in the present-day deep biosphere as well as early life on Earth and beyond. PMID:26056279

Simulating Gamma-Ray Emission in Star-forming Galaxies

NASA Astrophysics Data System (ADS)

Pfrommer, Christoph; Pakmor, Rüdiger; Simpson, Christine M.; Springel, Volker

2017-10-01

Star-forming galaxies emit GeV and TeV gamma-rays that are thought to originate from hadronic interactions of cosmic-ray (CR) nuclei with the interstellar medium. To understand the emission, we have used the moving-mesh code Arepo to perform magnetohydrodynamical galaxy formation simulations with self-consistent CR physics. Our galaxy models exhibit a first burst of star formation that injects CRs at supernovae. Once CRs have sufficiently accumulated in our Milky Way-like galaxy, their buoyancy force overcomes the magnetic tension of the toroidal disk field. As field lines open up, they enable anisotropically diffusing CRs to escape into the halo and to accelerate a bubble-like, CR-dominated outflow. However, these bubbles are invisible in our simulated gamma-ray maps of hadronic pion-decay and secondary inverse-Compton emission because of low gas density in the outflows. By adopting a phenomenological relation between star formation rate (SFR) and far-infrared emission and assuming that gamma-rays mainly originate from decaying pions, our simulated galaxies can reproduce the observed tight relation between far-infrared and gamma-ray emission, independent of whether we account for anisotropic CR diffusion. This demonstrates that uncertainties in modeling active CR transport processes only play a minor role in predicting gamma-ray emission from galaxies. We find that in starbursts, most of the CR energy is “calorimetrically” lost to hadronic interactions. In contrast, the gamma-ray emission deviates from this calorimetric property at low SFRs due to adiabatic losses, which cannot be identified in traditional one-zone models.

76 FR 49782 - Agency Information Collection Activities: Certificate of Origin

Federal Register 2010, 2011, 2012, 2013, 2014

2011-08-11

... Activities: Certificate of Origin AGENCY: U.S. Customs and Border Protection, Department of Homeland Security... submitting the following information collection request to the Office of Management and Budget (OMB) for review and approval in accordance with the Paperwork Reduction Act: Certificate of Origin (CBP Form 3229...

7 CFR 28.107 - Original cotton standards and reserve sets.

Code of Federal Regulations, 2014 CFR

2014-01-01

... 7 Agriculture 2 2014-01-01 2014-01-01 false Original cotton standards and reserve sets. 28.107... CONTAINER REGULATIONS COTTON CLASSING, TESTING, AND STANDARDS Regulations Under the United States Cotton Standards Act Practical Forms of Cotton Standards § 28.107 Original cotton standards and reserve sets. (a...

7 CFR 28.107 - Original cotton standards and reserve sets.

Code of Federal Regulations, 2011 CFR

2011-01-01

... 7 Agriculture 2 2011-01-01 2011-01-01 false Original cotton standards and reserve sets. 28.107... CONTAINER REGULATIONS COTTON CLASSING, TESTING, AND STANDARDS Regulations Under the United States Cotton Standards Act Practical Forms of Cotton Standards § 28.107 Original cotton standards and reserve sets. (a...

7 CFR 28.107 - Original cotton standards and reserve sets.

Code of Federal Regulations, 2010 CFR

2010-01-01

... 7 Agriculture 2 2010-01-01 2010-01-01 false Original cotton standards and reserve sets. 28.107... CONTAINER REGULATIONS COTTON CLASSING, TESTING, AND STANDARDS Regulations Under the United States Cotton Standards Act Practical Forms of Cotton Standards § 28.107 Original cotton standards and reserve sets. (a...

7 CFR 28.107 - Original cotton standards and reserve sets.

Code of Federal Regulations, 2013 CFR

2013-01-01

... 7 Agriculture 2 2013-01-01 2013-01-01 false Original cotton standards and reserve sets. 28.107... CONTAINER REGULATIONS COTTON CLASSING, TESTING, AND STANDARDS Regulations Under the United States Cotton Standards Act Practical Forms of Cotton Standards § 28.107 Original cotton standards and reserve sets. (a...

7 CFR 28.107 - Original cotton standards and reserve sets.

Code of Federal Regulations, 2012 CFR

2012-01-01

... 7 Agriculture 2 2012-01-01 2012-01-01 false Original cotton standards and reserve sets. 28.107... CONTAINER REGULATIONS COTTON CLASSING, TESTING, AND STANDARDS Regulations Under the United States Cotton Standards Act Practical Forms of Cotton Standards § 28.107 Original cotton standards and reserve sets. (a...

Original predictive approach to the compressibility of pharmaceutical powder mixtures based on the Kawakita equation.

PubMed

Mazel, Vincent; Busignies, Virginie; Duca, Stéphane; Leclerc, Bernard; Tchoreloff, Pierre

2011-05-30

In the pharmaceutical industry, tablets are obtained by the compaction of two or more components which have different physical properties and compaction behaviours. Therefore, it could be interesting to predict the physical properties of the mixture using the single-component results. In this paper, we have focused on the prediction of the compressibility of binary mixtures using the Kawakita model. Microcrystalline cellulose (MCC) and L-alanine were compacted alone and mixed at different weight fractions. The volume reduction, as a function of the compaction pressure, was acquired during the compaction process ("in-die") and after elastic recovery ("out-of-die"). For the pure components, the Kawakita model is well suited to the description of the volume reduction. For binary mixtures, an original approach for the prediction of the volume reduction without using the effective Kawakita parameters was proposed and tested. The good agreement between experimental and predicted data proved that this model was efficient to predict the volume reduction of MCC and L-alanine mixtures during compaction experiments. Copyright © 2011 Elsevier B.V. All rights reserved.

A generalized parametric response mapping method for analysis of multi-parametric imaging: A feasibility study with application to glioblastoma.

PubMed

Lausch, Anthony; Yeung, Timothy Pok-Chi; Chen, Jeff; Law, Elton; Wang, Yong; Urbini, Benedetta; Donelli, Filippo; Manco, Luigi; Fainardi, Enrico; Lee, Ting-Yim; Wong, Eugene

2017-11-01

Parametric response map (PRM) analysis of functional imaging has been shown to be an effective tool for early prediction of cancer treatment outcomes and may also be well-suited toward guiding personalized adaptive radiotherapy (RT) strategies such as sub-volume boosting. However, the PRM method was primarily designed for analysis of longitudinally acquired pairs of single-parameter image data. The purpose of this study was to demonstrate the feasibility of a generalized parametric response map analysis framework, which enables analysis of multi-parametric data while maintaining the key advantages of the original PRM method. MRI-derived apparent diffusion coefficient (ADC) and relative cerebral blood volume (rCBV) maps acquired at 1 and 3-months post-RT for 19 patients with high-grade glioma were used to demonstrate the algorithm. Images were first co-registered and then standardized using normal tissue image intensity values. Tumor voxels were then plotted in a four-dimensional Cartesian space with coordinate values equal to a voxel's image intensity in each of the image volumes and an origin defined as the multi-parametric mean of normal tissue image intensity values. Voxel positions were orthogonally projected onto a line defined by the origin and a pre-determined response vector. The voxels are subsequently classified as positive, negative or nil, according to whether projected positions along the response vector exceeded a threshold distance from the origin. The response vector was selected by identifying the direction in which the standard deviation of tumor image intensity values was maximally different between responding and non-responding patients within a training dataset. Voxel classifications were visualized via familiar three-class response maps and then the fraction of tumor voxels associated with each of the classes was investigated for predictive utility analogous to the original PRM method. Independent PRM and MPRM analyses of the contrast-enhancing lesion (CEL) and a 1 cm shell of surrounding peri-tumoral tissue were performed. Prediction using tumor volume metrics was also investigated. Leave-one-out cross validation (LOOCV) was used in combination with permutation testing to assess preliminary predictive efficacy and estimate statistically robust P-values. The predictive endpoint was overall survival (OS) greater than or equal to the median OS of 18.2 months. Single-parameter PRM and multi-parametric response maps (MPRMs) were generated for each patient and used to predict OS via the LOOCV. Tumor volume metrics (P ≥ 0.071 ± 0.01) and single-parameter PRM analyses (P ≥ 0.170 ± 0.01) were not found to be predictive of OS within this study. MPRM analysis of the peri-tumoral region but not the CEL was found to be predictive of OS with a classification sensitivity, specificity and accuracy of 80%, 100%, and 89%, respectively (P = 0.001 ± 0.01). The feasibility of a generalized MPRM analysis framework was demonstrated with improved prediction of overall survival compared to the original single-parameter method when applied to a glioblastoma dataset. The proposed algorithm takes the spatial heterogeneity in multi-parametric response into consideration and enables visualization. MPRM analysis of peri-tumoral regions was shown to have predictive potential supporting further investigation of a larger glioblastoma dataset. © 2017 American Association of Physicists in Medicine.

PERSONAL VULNERABILITIES AND ASSORTATIVE MATE SELECTION AMONG NEWLYWED SPOUSES.

PubMed

Trombello, Joseph M; Schoebi, Dominik; Bradbury, Thomas N

2015-06-01

Assortative-mating theories propose that individuals select romantic relationship partners who are similar to them on positive and negative qualities. Furthermore, stress-generation and intergenerational transmission of divorce models argue that one's depression history or family-of-origin relationship problems predict qualities of a marital partner that predispose them to relationship distress. We analyzed data from 172 newlywed couples to examine predictors and mediators of a marital partner's risk index. First, an index of one's own and one's partner risk was created through factor analysis and was comprised of measures that indicate insecurity about oneself. This index was significantly correlated with baseline marital satisfaction and, among men, steps toward divorce at follow-up. Then, structural equation modeling tested direct and indirect pathways predicting partner's risk index, analyzing prior depression history and family-of-origin relational impairment as predictors and one's own risk index as the mediator. Results demonstrated that own risk index reliably predicted partner's risk, while own risk index also mediated the relationship between own family-of-origin relational dysfunction/depression history and partner's risk index. These results support assortative mating theories and suggest that the association between adverse family-of-origin relationships or depression history and the risk profile in one's marital partner is explained by one's own risk profile.

Personalized Cancer Medicine: An Organoid Approach.

PubMed

Aboulkheyr Es, Hamidreza; Montazeri, Leila; Aref, Amir Reza; Vosough, Massoud; Baharvand, Hossein

2018-04-01

Personalized cancer therapy applies specific treatments to each patient. Using personalized tumor models with similar characteristics to the original tumors may result in more accurate predictions of drug responses in patients. Tumor organoid models have several advantages over pre-existing models, including conserving the molecular and cellular composition of the original tumor. These advantages highlight the tremendous potential of tumor organoids in personalized cancer therapy, particularly preclinical drug screening and predicting patient responses to selected treatment regimens. Here, we highlight the advantages, challenges, and translational potential of tumor organoids in personalized cancer therapy and focus on gene-drug associations, drug response prediction, and treatment selection. Finally, we discuss how microfluidic technology can contribute to immunotherapy drug screening in tumor organoids. Copyright © 2017 Elsevier Ltd. All rights reserved.

Predictable transcriptome evolution in the convergent and complex bioluminescent organs of squid

PubMed Central

Pankey, M. Sabrina; Minin, Vladimir N.; Imholte, Greg C.; Suchard, Marc A.; Oakley, Todd H.

2014-01-01

Despite contingency in life’s history, the similarity of evolutionarily convergent traits may represent predictable solutions to common conditions. However, the extent to which overall gene expression levels (transcriptomes) underlying convergent traits are themselves convergent remains largely unexplored. Here, we show strong statistical support for convergent evolutionary origins and massively parallel evolution of the entire transcriptomes in symbiotic bioluminescent organs (bacterial photophores) from two divergent squid species. The gene expression similarities are so strong that regression models of one species’ photophore can predict organ identity of a distantly related photophore from gene expression levels alone. Our results point to widespread parallel changes in gene expression evolution associated with convergent origins of complex organs. Therefore, predictable solutions may drive not only the evolution of novel, complex organs but also the evolution of overall gene expression levels that underlie them. PMID:25336755

An intermittency model for predicting roughness induced transition

NASA Astrophysics Data System (ADS)

Ge, Xuan; Durbin, Paul

2014-11-01

An extended model for roughness-induced transition is proposed based on an intermittency transport equation for RANS modeling formulated in local variables. To predict roughness effects in the fully turbulent boundary layer, published boundary conditions for k and ω are used, which depend on the equivalent sand grain roughness height, and account for the effective displacement of wall distance origin. Similarly in our approach, wall distance in the transition model for smooth surfaces is modified by an effective origin, which depends on roughness. Flat plate test cases are computed to show that the proposed model is able to predict the transition onset in agreement with a data correlation of transition location versus roughness height, Reynolds number, and inlet turbulence intensity. Experimental data for a turbine cascade are compared with the predicted results to validate the applicability of the proposed model. Supported by NSF Award Number 1228195.

False-nearest-neighbors algorithm and noise-corrupted time series

NASA Astrophysics Data System (ADS)

Rhodes, Carl; Morari, Manfred

1997-05-01

The false-nearest-neighbors (FNN) algorithm was originally developed to determine the embedding dimension for autonomous time series. For noise-free computer-generated time series, the algorithm does a good job in predicting the embedding dimension. However, the problem of predicting the embedding dimension when the time-series data are corrupted by noise was not fully examined in the original studies of the FNN algorithm. Here it is shown that with large data sets, even small amounts of noise can lead to incorrect prediction of the embedding dimension. Surprisingly, as the length of the time series analyzed by FNN grows larger, the cause of incorrect prediction becomes more pronounced. An analysis of the effect of noise on the FNN algorithm and a solution for dealing with the effects of noise are given here. Some results on the theoretically correct choice of the FNN threshold are also presented.

Abiological origin of described stromatolites older than 3.2 Ga

NASA Technical Reports Server (NTRS)

Lowe, D. R.

1994-01-01

The three well-documented occurrences of three-dimensional stromatolites older than 3.2 Ga meet most criteria for biogenicity except the presence of fossil bacteria. However, they also show features more consistent with nonbiological origins. Small conical structures in the Strelley Pool chert in the upper part of the Warrawoona Group (3.5-3.2 Ga), Western Australia, lack the structure typical of stromatolites and probably formed mainly through evaporitc precipitation. A domal structure from the North Pole chert, Warrawoona Group, formed by soft-sediment deformation or originally flat layers. Laminated chert containing domal and pseudocolumnar structures in the Onverwacht Group (3.5-3.3 Ga), Barberton Greenstone Belt, South Africa, extends downward into veins and cavities, where it formed through inorganic precipitation. Although bacterial communities were widespread on Earth prior to 3.2 Ga, these particular three-dimensional structures are probably abiotic in origin and do not provide information on the paleobiology or paleoecology of early organisms. The paucity of Archean stromatolites older than 3.2 Ga probably reflects the paucity of known and possibly extant carbonate deposits of this age.

On the origin of the Orion and Monoceros molecular cloud complexes

NASA Technical Reports Server (NTRS)

Franco, J.; Tenorio-Tagle, G.; Bodenheimer, P.; Rozyczka, M.; Mirabel, I. F.

1988-01-01

A detailed model for the origin of the Orion and Monoceros cloud complexes is presented, showing that a single high-velocity H I cloud-galaxy collision can explain their main observed features. The collision generates massive shocked layers, and self-gravity can then provide the conditions for the transformation of these layers into molecular clouds. The clouds formed by the collision maintain the motion of their parental shocked gas and reach positions located far away from the plane. According to this model, both the Orion and Monoceros complexes were formed some 60 million yr ago, when the original shocked layer was fragmented by Galactic tidal forces.

Establishment of redox conditions during planetary collisions as an origin of chondrites

NASA Technical Reports Server (NTRS)

Tsuchiyama, A.; Kitamura, M.

1994-01-01

Collisions between a 'cometlike' body (mixtures of chondritic materials and ice) and a slightly differentiated body were proposed for shock origin of ordinary chondrites. In this model, chondrules were formed with shock melting, and matrices were formed both by fracturing of materials and by recondensation of evaporated materials. This model can explain different redox conditions of chondrite formations by ice evaporation. Although this model was originally proposed for ordinary chondrites, we assume here that the model can be extended to chondrite formation in general. In this paper, redox conditions during chondrite formation by collisions will be discussed in the light of phase diagrams for solid-vapor equilibria.

A Study of Burnout in International and Country of Origin Teachers

NASA Astrophysics Data System (ADS)

Coulter, Mary Ann; Abney, Paul C.

2009-01-01

The study examined the extent to which burnout levels of teachers working in international schools differed from the burnout level of teachers working in their country of origin. All participants of the study were Canadian citizens who were educated in Canada, held Ontario College of Teachers certification and were teaching credit courses in high schools offering the Ontario curriculum under the auspice of the Ontario Ministry of Education. All teachers completed the Burnout Test Form 1 - Revised (Jerabeck, Burnout Test Form 1 - Revised, 2001) online. The study found that international teachers had a statistically lower level of burnout than teachers working in their country of origin.

Long-Range Solar Activity Predictions: A Reprieve from Cycle #24's Activity

NASA Technical Reports Server (NTRS)

Richon, K.; Schatten, K.

2003-01-01

We discuss the field of long-range solar activity predictions and provide an outlook into future solar activity. Orbital predictions for satellites in Low Earth Orbit (LEO) depend strongly on exospheric densities. Solar activity forecasting is important in this regard, as the solar ultra-violet (UV) and extreme ultraviolet (EUV) radiations inflate the upper atmospheric layers of the Earth, forming the exosphere in which satellites orbit. Rather than concentrate on statistical, or numerical methods, we utilize a class of techniques (precursor methods) which is founded in physical theory. The geomagnetic precursor method was originally developed by the Russian geophysicist, Ohl, using geomagnetic observations to predict future solar activity. It was later extended to solar observations, and placed within the context of physical theory, namely the workings of the Sun s Babcock dynamo. We later expanded the prediction methods with a SOlar Dynamo Amplitude (SODA) index. The SODA index is a measure of the buried solar magnetic flux, using toroidal and poloidal field components. It allows one to predict future solar activity during any phase of the solar cycle, whereas previously, one was restricted to making predictions only at solar minimum. We are encouraged that solar cycle #23's behavior fell closely along our predicted curve, peaking near 192, comparable to the Schatten, Myers and Sofia (1996) forecast of 182+/-30. Cycle #23 extends from 1996 through approximately 2006 or 2007, with cycle #24 starting thereafter. We discuss the current forecast of solar cycle #24, (2006-2016), with a predicted smoothed F10.7 radio flux of 142+/-28 (1-sigma errors). This, we believe, represents a reprieve, in terms of reduced fuel costs, etc., for new satellites to be launched or old satellites (requiring reboosting) which have been placed in LEO. By monitoring the Sun s most deeply rooted magnetic fields; long-range solar activity can be predicted. Although a degree of uncertainty in the long-range predictions remains, requiring future monitoring, we do not expect the next cycle's + 2-sigma value will rise significantly above solar cycle #23's activity level.

Constraints on Early Mars Evolution and Dichotomy Origin from Relaxation Modeling of Dichotomy Boundary in the Ismenius Region

NASA Technical Reports Server (NTRS)

Guest, A.; Smrekar, S. E.

2004-01-01

The Martian dichotomy is a global feature separating the northern and southern hemispheres. The 3.5 - 4 Gyr old feature is manifested by a topographic difference of 2-6 km and crustal thickness difference of approx. 15 - 30 km between the two hemispheres. In the Ismenius region, sections of the boundary are characterized by a single scarp with a slope of approx. 20 deg. - 23 deg. and are believed to be among the most well preserved parts of the dichotomy boundary. The origin of the dichotomy is unknown. Endogenic hypotheses do not predict the steep slopes (scarps) of the dichotomy boundary. Exogenic models for forming the northern lowlands by impact cratering, associate the scarps along the dichotomy boundary with craters' rims, but are not globally consistent with the topography and gravity. In order to better understand the origin of the Martian dichotomy, it is necessary to know if the steep scarps along the boundary represent the original shape of the dichotomy. Smrekar et al. presented evidence showing that the boundary scarp in Ismenius is a fault along which the highland crust was down faulted. We test whether the relaxation process could produce faulting along the dichotomy boundary and examine the crustal and mantle conditions that would allow for faulting to occur within 1 Gyr and preserve the long wavelength topography over another 3 Gyr. We approach the problem by a combination of numerical and semi-analytical modeling. We test different viscosity profiles and crustal thicknesses by comparing our modeled magnitude, location and timing of plastic strain and displacements to detailed geologic observations in the Ismenius region.

The protein folds as platonic forms: new support for the pre-Darwinian conception of evolution by natural law.

PubMed

Denton, Michael J; Marshall, Craig J; Legge, Michael

2002-12-07

Before the Darwinian revolution many biologists considered organic forms to be determined by natural law like atoms or crystals and therefore necessary, intrinsic and immutable features of the world order, which will occur throughout the cosmos wherever there is life. The search for the natural determinants of organic form-the celebrated "Laws of Form"-was seen as one of the major tasks of biology. After Darwin, this Platonic conception of form was abandoned and natural selection, not natural law, was increasingly seen to be the main, if not the exclusive, determinant of organic form. However, in the case of one class of very important organic forms-the basic protein folds-advances in protein chemistry since the early 1970s have revealed that they represent a finite set of natural forms, determined by a number of generative constructional rules, like those which govern the formation of atoms or crystals, in which functional adaptations are clearly secondary modifications of primary "givens of physics." The folds are evidently determined by natural law, not natural selection, and are "lawful forms" in the Platonic and pre-Darwinian sense of the word, which are bound to occur everywhere in the universe where the same 20 amino acids are used for their construction. We argue that this is a major discovery which has many important implications regarding the origin of proteins, the origin of life and the fundamental nature of organic form. We speculate that it is unlikely that the folds will prove to be the only case in nature where a set of complex organic forms is determined by natural law, and suggest that natural law may have played a far greater role in the origin and evolution of life than is currently assumed.

Extended cooperative control synthesis

NASA Technical Reports Server (NTRS)

Davidson, John B.; Schmidt, David K.

1994-01-01

This paper reports on research for extending the Cooperative Control Synthesis methodology to include a more accurate modeling of the pilot's controller dynamics. Cooperative Control Synthesis (CCS) is a methodology that addresses the problem of how to design control laws for piloted, high-order, multivariate systems and/or non-conventional dynamic configurations in the absence of flying qualities specifications. This is accomplished by emphasizing the parallel structure inherent in any pilot-controlled, augmented vehicle. The original CCS methodology is extended to include the Modified Optimal Control Model (MOCM), which is based upon the optimal control model of the human operator developed by Kleinman, Baron, and Levison in 1970. This model provides a modeling of the pilot's compensation dynamics that is more accurate than the simplified pilot dynamic representation currently in the CCS methodology. Inclusion of the MOCM into the CCS also enables the modeling of pilot-observation perception thresholds and pilot-observation attention allocation affects. This Extended Cooperative Control Synthesis (ECCS) allows for the direct calculation of pilot and system open- and closed-loop transfer functions in pole/zero form and is readily implemented in current software capable of analysis and design for dynamic systems. Example results based upon synthesizing an augmentation control law for an acceleration command system in a compensatory tracking task using the ECCS are compared with a similar synthesis performed by using the original CCS methodology. The ECCS is shown to provide augmentation control laws that yield more favorable, predicted closed-loop flying qualities and tracking performance than those synthesized using the original CCS methodology.

Uncovering the Chemistry of Earth-like Planets

NASA Astrophysics Data System (ADS)

Zeng, Li; Jacobsen, Stein; Sasselov, Dimitar D.

2015-01-01

We propose to use evidence from our solar system to understand exoplanets, and in particular, to predict their surface chemistry and thereby the possibility of life. An Earth-like planet, born from the same nebula as its host star, is composed primarily of silicate rocks and an iron-nickel metal core, and depleted in volatile content in a systematic manner. The more volatile (easier to vaporize or dissociate into gas form) an element is in an Earth-like planet, the more depleted the element is compared to its host star. After depletion, an Earth-like planet would go through the process of core formation due to heat from radioactive decay and collisions. Core formation depletes a planet's rocky mantle of siderophile (iron-loving) elements, in addition to the volatile depletion. After that, Earth-like planets likely accrete some volatile-rich materials, called 'late veneer'. The late veneer could be essential to the origins of life on Earth and Earth-like planets, as it also delivers the volatiles such as nitrogen, sulfur, carbon and water to the planet's surface, which are crucial for life to occur. We plan to build an integrative model of Earth-like planets from the bottom up. We would like to infer their chemical compositions from their mass-radius relations and their host stars' elemental abundances, and understand the origins of volatile contents (especially water) on their surfaces, and thereby shed light on the origins of life on them.

Testing the Goodwin growth-cycle macroeconomic dynamics in Brazil

NASA Astrophysics Data System (ADS)

Moura, N. J.; Ribeiro, Marcelo B.

2013-05-01

This paper discusses the empirical validity of Goodwin’s (1967) macroeconomic model of growth with cycles by assuming that the individual income distribution of the Brazilian society is described by the Gompertz-Pareto distribution (GPD). This is formed by the combination of the Gompertz curve, representing the overwhelming majority of the population (˜99%), with the Pareto power law, representing the tiny richest part (˜1%). In line with Goodwin’s original model, we identify the Gompertzian part with the workers and the Paretian component with the class of capitalists. Since the GPD parameters are obtained for each year and the Goodwin macroeconomics is a time evolving model, we use previously determined, and further extended here, Brazilian GPD parameters, as well as unemployment data, to study the time evolution of these quantities in Brazil from 1981 to 2009 by means of the Goodwin dynamics. This is done in the original Goodwin model and an extension advanced by Desai et al. (2006). As far as Brazilian data is concerned, our results show partial qualitative and quantitative agreement with both models in the studied time period, although the original one provides better data fit. Nevertheless, both models fall short of a good empirical agreement as they predict single center cycles which were not found in the data. We discuss the specific points where the Goodwin dynamics must be improved in order to provide a more realistic representation of the dynamics of economic systems.

Where Do Comets Come From?

ERIC Educational Resources Information Center

Van Flandern, Tom

1982-01-01

Proposes a new origin for comets in the solar system, namely, that comets originated in the breakup of a body orbiting the sun in or near the present location of the asteroid belt in the relatively recent past. Predictions related to the theory are discussed. (Author/JN)

Linear island and seamount chains, aseismic ridges and intraplate volcanism: Results from DSDP

USGS Publications Warehouse

Clague, David A.

1981-01-01

The Deep Sea Drilling Project drilled a substantial number of sites that bear on the origin of linear island and seamount chains, aseismic ridges and other more regional expressions of intraplate volcanism. Drilling in the Emperor Seamounts during Leg 55 was particularly successful. Results from this leg include: 1) the volcanoes of the Hawaiian-Emperor chain continue to increase in age away from Kilauea as predicted. 2) Suiko Seamount formed at a paleolatitide of 26.9±3.5°N, 7° north of present-day Hawaii, but far south of its present latitude of 44.8°N. 3) the volcanic rock types recovered include hawaiite, mugearite, alkalic basalt and tholeiitic basalt in the sequence and relative volume expected for Hawaiian volcanoes. 4) the tholeiitic and alkalic basalts recovered are geochemically similar to those in the Hawaiian Islands, only the ratio of 87Sr/86Sr appears to change through time. All the lavas appear to be derived from a source that has small-scale heterogeneities, but is homogeneous on a large scale. 4) The Emperor Seamounts were once volcanic islands that underwent subaerial and shallow marine erosion, and deposition of shallow-water biogenic carbonate sediments that capped all or most of each volcano.Drilling in other regions has yielded less conclusive results. For example, it is uncertain if the Line Islands are an age progressive chain (hot-spot trace) or result from some other type of intraplate volcanism. The mid-Pacific Mountains also show evidence of originating from a regional episode of volcanism in the mid-Cretaceous. Drilling in the Nauru Basin encountered a voluminous mid-Cretaceous volcanic flow-sill complex that overlies Jurassic magnetic anomalies, yet is composed of depleted tholeiite. In the Indian Ocean, drilling on the Ninety-East Ridge established that it 1) is volcanic in origin; 2) is older to the north; 3) formed in shallow water, and 4) formed further south and has moved northward. It appears that the Ninety-East Ridge, like the Hawaiian-Emperor chain, is a hot spot trace. In the Atlantic Ocean, drilling on the Iceland-Faeroe Ridge and the Rio Grande Rise-Walvis Ridge suggests that all these aseismic ridges are hot spot traces generated by the Iceland and Tristan de Cunha hot-spots.

Natural Language Processing for Cohort Discovery in a Discharge Prediction Model for the Neonatal ICU.

PubMed

Temple, Michael W; Lehmann, Christoph U; Fabbri, Daniel

2016-01-01

Discharging patients from the Neonatal Intensive Care Unit (NICU) can be delayed for non-medical reasons including the procurement of home medical equipment, parental education, and the need for children's services. We previously created a model to identify patients that will be medically ready for discharge in the subsequent 2-10 days. In this study we use Natural Language Processing to improve upon that model and discern why the model performed poorly on certain patients. We retrospectively examined the text of the Assessment and Plan section from daily progress notes of 4,693 patients (103,206 patient-days) from the NICU of a large, academic children's hospital. A matrix was constructed using words from NICU notes (single words and bigrams) to train a supervised machine learning algorithm to determine the most important words differentiating poorly performing patients compared to well performing patients in our original discharge prediction model. NLP using a bag of words (BOW) analysis revealed several cohorts that performed poorly in our original model. These included patients with surgical diagnoses, pulmonary hypertension, retinopathy of prematurity, and psychosocial issues. The BOW approach aided in cohort discovery and will allow further refinement of our original discharge model prediction. Adequately identifying patients discharged home on g-tube feeds alone could improve the AUC of our original model by 0.02. Additionally, this approach identified social issues as a major cause for delayed discharge. A BOW analysis provides a method to improve and refine our NICU discharge prediction model and could potentially avoid over 900 (0.9%) hospital days.

48-Week Outcome after Cessation of Nucleos(t)ide Analogue Treatment in Chronic Hepatitis B Patient and the Associated Factors with Relapse.

PubMed

Xu, Wen-Xiong; Zhang, Qian; Zhu, Xiang; Lin, Chao-Shuang; Chen, You-Ming; Deng, Hong; Mei, Yong-Yu; Zhao, Zhi-Xin; Xie, Dong-Ying; Gao, Zhi-Liang; Xie, Chan; Peng, Liang

2018-01-01

We aimed to ascertain the feasibility and safety of NA cessation, the status of patients after cessation, and the predictive factors for relapse and subsequent retreatment. A total of 92 patients were enrolled in this prospective study. Patients were monitored every month for the first 3 months after cessation and every 3 months thereafter. Sixty-two patients finished 48 weeks of follow-up. None died or developed liver failure, cirrhosis, or HCC. The 62 patients could be divided into 4 categories according to the 48-week clinical development of relapse. Virologic relapses occurred in 39 (62.9%) patients, with 72.7% occurring in the first 24 weeks in origin HBeAg positive patients and 82.4% in the first 12 weeks in origin HBeAg negative patients. Age (OR = 1.06, 95% CI = 1.02-1.10; p = 0.003), the HBsAg level (OR = 2.21, 95% CI = 1.47-3.32; p < 0.001), and positive origin HBeAg status (OR = 0.32, 95% CI = 0.14-0.74; p = 0.008) were predictive factors to virologic relapse. HBV DNA level (OR = 1.34, 95% CI = 1.13-1.58; p < 0.001) was predictive factor to retreatment. NA cessation is safe under supervision. Age, HBsAg level, and origin HBeAg status can be predictive factors for virologic relapse. The study was submitted to ClinicalTrials.gov Protocol Registration and Results System with the assigned NCT ID NCT02883647.

The border effect in surname structure: an Italian-Slovenian case study.

PubMed

Lucchetti, Enzo; Tasso, Miro; Amoruso, Irene; Caravello, Gianumberto

2011-06-01

Population surname structure in northeastern Italy municipalities, in which small Slovenian-speaking groups are present, are compared with neighboring populations of both Italian and Slovenian nationality. In the early 20th century those municipalities were part of the Italian territory and underwent a massive Italianization process that led to the mutation of the original Slovenian surnames into a derived Italian form. In order to track surname relationships among the examined communities, two different similarity analyses were performed: the first using the surnames as they are recorded in the Italian and Slovenian official telephone directories, and the second restoring the Italianized Slovenian surnames to their original form and then recalculating the populations' similarity. Both comparisons evidence a separation that depends on nationality, which is less marked after restoring surnames to their original form. Geographical elements, older historical events, and socioeconomic traits allow interpretation of these results.

Filamentation instability of magnetosonic waves in the solar wind environment

NASA Technical Reports Server (NTRS)

Kuo, S. P.; Lee, M. C.

1989-01-01

Intense magnetosonic waves, originally propagating at the right angle with the interplanetary magnetic field, can excite a purely growing mode along the interplanetary magnetic field together with two symmetric magnetosonic sidebands propagating obliquely across the magnetic field. This instability process leads to the filamentation of the magnetosonic pump waves. These two excited magnetosonic sideband modes propagate together perpendicularly across the magnetic field and, meanwhile, form a standing wave pattern along the magnetic field. The thresholds of this filamentation instability can be exceeded in the solar wind environment. It is predicted that the density fluctuations produced by the filamentation instability along the interplanetary magnetic field have wavelengths greater than, at least, a few earth radii. The polarization of the obliquely propagating magnetosonic waves excited by the filamentation instability is determined by the characteristics of the magnetosonic pump waves and the environmental plasmas.

Ultraviolet Irradiation of Naphthalene in H2O Ice: Implications for Meteorites and Biogenesis

NASA Technical Reports Server (NTRS)

Bernstein, Max P.; Dworkin, Jason; Sandford, Scott A.; Allamandola, Louis J.; DeVincenzi, Donald L. (Technical Monitor)

2000-01-01

The polycyclic aromatic hydrocarbon (PAH) naphthalene was exposed to ultraviolet radiation in H2O ice under astrophysical conditions, and the products were analyzed using infrared spectroscopy and high performance liquid chromatography. As we found in our earlier studies on the photoprocessing of coronene in H2O ice, aromatic alcohols and ketones (quinones) were formed. The regiochemistry of the reactions is described and leads to specific predictions of the relative abundances of various oxidized naphthalenes that should exist in meteorites if interstellar ice photochemistry influenced their aromatic inventory. Since oxidized PAHs are present in carbon-rich meteorites and interplanetary dust particles (IDPs), and ubiquitous in and fundamental to biochemistry, the delivery of such extraterrestrial molecules to the early Earth may have played a role in the origin and evolution of life.

A mathematical model for jet engine combustor pollutant emissions

NASA Technical Reports Server (NTRS)

Boccio, J. L.; Weilerstein, G.; Edelman, R. B.

1973-01-01

Mathematical modeling for the description of the origin and disposition of combustion-generated pollutants in gas turbines is presented. A unified model in modular form is proposed which includes kinetics, recirculation, turbulent mixing, multiphase flow effects, swirl and secondary air injection. Subelements of the overall model were applied to data relevant to laboratory reactors and practical combustor configurations. Comparisons between the theory and available data show excellent agreement for basic CO/H2/Air chemical systems. For hydrocarbons the trends are predicted well including higher-than-equilibrium NO levels within the fuel rich regime. Although the need for improved accuracy in fuel rich combustion is indicated, comparisons with actual jet engine data in terms of the effect of combustor-inlet temperature is excellent. In addition, excellent agreement with data is obtained regarding reduced NO emissions with water droplet and steam injection.

Mathematical modeling of the relation between myosin phosphorylation and stress development in smooth muscles.

PubMed

Fajmut, Ales; Dobovisek, Andrej; Brumen, Milan

2005-01-01

In this paper the 4-state latch bridge model proposed by Rembold and Murphy is expanded; first by incorporation of the analytical expression of Ca2+ dependent MLCK activation from the work of Kato et al. and second, by inclusion of the myosin dephosphorylation based on the Michaelis-Menten kinetics. The analysis of the proposed model and the comparison with the original model results as well as with the experimental data is presented. The model is able to predict the steady-state isometric stress and the myosin phosphorylation in dependence on steady cytosolic [Ca2+] as well as the temporal evolution of the system in dependence on the input Ca2+ signal in the form of biphasic transient, whereby our model results are in several aspects in better agreement with experimental observations.

Cocaine in the UK--1991.

PubMed

Strang, J; Johns, A; Caan, W

1993-01-01

More than 100 years after Freud's original endorsement of the drug, the use of cocaine is a problem for both users and for society, which struggles to organise effective responses to the epidemic of the last decade. During the 1980s the rapid spread of smokeable cocaine (including 'crack') was seen in the Americas (particularly the US). The initial simple predictions of an identical European epidemic were mistaken. The available data on the extent of cocaine use and of cocaine problems in the UK are examined. New forms of cocaine have been developed by black-market entrepreneurs ('freebase' and 'crack'), and new technologies have emerged for their use; with these new technologies have come new effects and new problems. The general psychiatrist now needs a knowledge of directly and indirectly related psychopathology which has an increasing relevance to the diagnosis and management of the younger patient.

Boundary-driven anomalous spirals in oscillatory media

NASA Astrophysics Data System (ADS)

Kessler, David A.; Levine, Herbert

2017-06-01

We study a heretofore ignored class of spiral patterns in oscillatory media as characterized by the complex Landau-Ginzburg model. These spirals emerge from modulating the growth rate as a function of r, thereby turning off the instability at large r. They are uniquely determined by matching to this outer condition, lifting a degeneracy in the set of steady-state solutions of the original equations. Unlike the well-studied spiral which acts as a wave source, has a simple core structure and is insensitive to the details of the boundary on which no-flux conditions are imposed, these new spirals are wave sinks, have non-monotonic wavefront curvature near the core, and can be patterned by the form of the spatial boundary. We predict that these anomalous spirals could be produced in nonlinear optics experiments via spatially modulating the gain of the medium.

Laboratory Investigations into the Spectra and Origin of Propylene Oxide: A Chiral Interstellar Molecule

NASA Technical Reports Server (NTRS)

Hudson, R. L.; Loeffler, M. J.; Yocum, K. M.

2017-01-01

Propylene oxide was recently identified in the interstellar medium, but few laboratory results are available for this molecule to guide current and future investigations. To address this situation, here we report infrared spectra, absorption coefficients, and band strengths of solid propylene oxide along with the first measurement of its refractive index and a calculation of its density, all for the amorphous solid form of the compound. We present the first experimental results showing a low-temperature formation pathway for propylene oxide near 10 K in interstellar ice analogs. Connections are drawn between our new results and the interstellar molecules propanal and acetone, and predictions are made about several as yet unobserved vinyl alcohols and methylketene. Comparisons are given to earlier laboratory work and a few applications to interstellar and solar system astrochemistry are described.

Laboratory Investigations into the Spectra and Origin of Propylene Oxide: A Chiral Interstellar Molecule

NASA Astrophysics Data System (ADS)

Hudson, R. L.; Loeffler, M. J.; Yocum, K. M.

2017-02-01

Propylene oxide was recently identified in the interstellar medium, but few laboratory results are available for this molecule to guide current and future investigations. To address this situation, here we report infrared spectra, absorption coefficients, and band strengths of solid propylene oxide along with the first measurement of its refractive index and a calculation of its density, all for the amorphous solid form of the compound. We present the first experimental results showing a low-temperature formation pathway for propylene oxide near 10 K in interstellar ice analogs. Connections are drawn between our new results and the interstellar molecules propanal and acetone, and predictions are made about several as yet unobserved vinyl alcohols and methylketene. Comparisons are given to earlier laboratory work and a few applications to interstellar and solar system astrochemistry are described.

Spectral features of solar plasma flows

NASA Astrophysics Data System (ADS)

Barkhatov, N. A.; Revunov, S. E.

2014-11-01

Research to the identification of plasma flows in the Solar wind by spectral characteristics of solar plasma flows in the range of magnetohydrodynamics is devoted. To do this, the wavelet skeleton pattern of Solar wind parameters recorded on Earth orbit by patrol spacecraft and then executed their neural network classification differentiated by bandwidths is carry out. This analysis of spectral features of Solar plasma flows in the form of magnetic clouds (MC), corotating interaction regions (CIR), shock waves (Shocks) and highspeed streams from coronal holes (HSS) was made. The proposed data processing and the original correlation-spectral method for processing information about the Solar wind flows for further classification as online monitoring of near space can be used. This approach will allow on early stages in the Solar wind flow detect geoeffective structure to predict global geomagnetic disturbances.

Neutrinos from Choked Jets Accompanied by Type-II Supernovae

NASA Astrophysics Data System (ADS)

He, Hao-Ning; Kusenko, Alexander; Nagataki, Shigehiro; Fan, Yi-Zhong; Wei, Da-Ming

2018-04-01

The origin of the IceCube neutrinos is still an open question. Upper limits from diffuse gamma-ray observations suggest that the neutrino sources are either distant or hidden from gamma-ray observations. It is possible that the neutrinos are produced in jets that are formed in core-collapsing massive stars and fail to break out, the so-called choked jets. We study neutrinos from the jets choked in the hydrogen envelopes of red supergiant stars. Fast photo-meson cooling softens the neutrino spectrum, making it hard to explain the PeV neutrinos observed by IceCube in a one-component scenario, but a two-component model can explain the spectrum. Furthermore, we predict that a newly born jet-driven type-II supernova may be observed to be associated with a neutrino burst detected by IceCube.

On improvement to the Shock Propagation Model (SPM) applied to interplanetary shock transit time forecasting

NASA Astrophysics Data System (ADS)

Li, H. J.; Wei, F. S.; Feng, X. S.; Xie, Y. Q.

2008-09-01

This paper investigates methods to improve the predictions of Shock Arrival Time (SAT) of the original Shock Propagation Model (SPM). According to the classical blast wave theory adopted in the SPM, the shock propagating speed is determined by the total energy of the original explosion together with the background solar wind speed. Noting that there exists an intrinsic limit to the transit times computed by the SPM predictions for a specified ambient solar wind, we present a statistical analysis on the forecasting capability of the SPM using this intrinsic property. Two facts about SPM are found: (1) the error in shock energy estimation is not the only cause of the prediction errors and we should not expect that the accuracy of SPM to be improved drastically by an exact shock energy input; and (2) there are systematic differences in prediction results both for the strong shocks propagating into a slow ambient solar wind and for the weak shocks into a fast medium. Statistical analyses indicate the physical details of shock propagation and thus clearly point out directions of the future improvement of the SPM. A simple modification is presented here, which shows that there is room for improvement of SPM and thus that the original SPM is worthy of further development.

Establishment and comparison of four constitutive relationships of PC/ABS from low to high uniaxial strain rates

NASA Astrophysics Data System (ADS)

Wang, Haitao; Zhang, Yun; Huang, Zhigao; Tang, Zhongbin; Wang, Yanpei; Zhou, Huamin

2017-10-01

The objective of this paper is to accurately predict the rate/temperature-dependent deformation of a polycarbonate (PC) and acrylonitrile-butadiene-styrene (ABS) blend at low, moderate, and high strain rates for various temperatures. Four constitutive models have been employed to predict stress-strain responses of PC/ABS under these conditions, including the DSGZ model, the original Mulliken-Boyce (M-B) model, the modified M-B model, and an adiabatic model named the Wang model. To more accurately capture the large deformation of PC/ABS under the high strain rate loading, the original M-B model is modified by allowing for the evolution of the internal shear strength. All of the four constitutive models above have been implemented in the finite element software ABAQUS/Explicit. A comparison of prediction accuracies of the four constitutive models over a wide range of strain rates and temperatures has been presented. The modified M-B model is observed to be more accurate in predicting the deformation of PC/ABS at high strain rates for various temperatures than the original M-B model, and the Wang model is demonstrated to be the most accurate in simulating the deformation of PC/ABS at low, moderate, and high strain rates for various temperatures.

The magnetized universe: its origin and dissipation through acceleration and leakage to the voids

NASA Astrophysics Data System (ADS)

Colgate, Stirling A.; Li, Hui; Kronberg, Philipp P.

2011-06-01

The consistency is awesome between over a dozen observations and the paradigm of radio lobes being immense sources of magnetic energy, flux, and relativistic electrons, - a magnetized universe. The greater the total energy of an astrophysical phenomenon, the more restricted are the possible explanations. Magnetic energy is the most challenging because its origin is still considered problematic. We suggest that it is evident that the universe is magnetized because of radio lobes, ultra relativistic electrons, Faraday rotation measures, the polarized emission of extra galactic radio structures, the x-rays from relativistic electrons Comptonized on the CMB, and possibly extra galactic cosmic rays. The implied energies are so large that only the formation of supermassive black hole, (SMBH) at the center of every galaxy is remotely energetic enough to supply this immense energy, ~(1/10) 108 Msolarc2 per galaxy. Only a galaxy cluster of 1000 galaxies has comparable energy, but it is inversely, (to the number of galaxies), rare per galaxy. Yet this energy appears to be shared between magnetic fields and accelerated relativistic particles, both electrons and ions. Only a large-scale coherent dynamo generating poloidal flux within the accretion disk forming the massive black hole makes a reasonable starting point. The subsequent winding of this dynamo-derived magnetic flux by conducting, angular momentum-dominated accreting matter, (~1011 turns near the event horizon in 108 years) produces the immense, coherent magnetic jets or total flux of radio lobes and similarly in star formation. By extending this same physics to supernova-neutron star formation, we predict that similar differential winding of the flux that couples explosion ejecta and a newly formed, rapidly rotating neutron star will produce similar phenomena of a magnetic jet and lobes in the forming supernova nebula. In all cases the conversion of force-free magnetic energy into accelerated ions and electrons is a major challenge.

Multinational assessment of accuracy of equations for predicting risk of kidney failure: a meta-analysis

PubMed Central

Tangri, Navdeep; Grams, Morgan E.; Levey, Andrew S.; Coresh, Josef; Appel, Lawrence; Astor, Brad C.; Chodick, Gabriel; Collins, Allan J.; Djurdjev, Ognjenka; Elley, C. Raina; Evans, Marie; Garg, Amit X.; Hallan, Stein I.; Inker, Lesley; Ito, Sadayoshi; Jee, Sun Ha; Kovesdy, Csaba P.; Kronenberg, Florian; Lambers Heerspink, Hiddo J.; Marks, Angharad; Nadkarni, Girish N.; Navaneethan, Sankar D.; Nelson, Robert G.; Titze, Stephanie; Sarnak, Mark J.; Stengel, Benedicte; Woodward, Mark; Iseki, Kunitoshi

2016-01-01

Importance Identifying patients at risk of chronic kidney disease (CKD) progression may facilitate more optimal nephrology care. Kidney failure risk equations (KFREs) were previously developed and validated in two Canadian cohorts. Validation in other regions and in CKD populations not under the care of a nephrologist is needed. Objective To evaluate the accuracy of the KFREs across different geographic regions and patient populations through individual-participant data meta-analysis. Data Sources Thirty-one cohorts, including 721,357 participants with CKD Stages 3–5 in over 30 countries spanning 4 continents, were studied. These cohorts collected data from 1982 through 2014. Study Selection Cohorts participating in the CKD Prognosis Consortium with data on end-stage renal disease. Data Extraction and Synthesis Data were obtained and statistical analyses were performed between July 2012 and June 2015. Using the risk factors from the original KFREs, cohort-specific hazard ratios were estimated, and combined in meta-analysis to form new “pooled” KFREs. Original and pooled equation performance was compared, and the need for regional calibration factors was assessed. Main Outcome and Measure Kidney failure (treatment by dialysis or kidney transplantation). Results During a median follow-up of 4 years, 23,829 cases of kidney failure were observed. The original KFREs achieved excellent discrimination (ability to differentiate those who developed kidney failure from those who did not) across all cohorts (overall C statistic, 0.90 (95% CI 0.89–0.92) at 2 years and 0.88 (95% CI 0.86–0.90) at 5 years); discrimination in subgroups by age, race, and diabetes status was similar. There was no improvement with the pooled equations. Calibration (the difference between observed and predicted risk) was adequate in North American cohorts, but the original KFREs overestimated risk in some non-North American cohorts. Addition of a calibration factor that lowered the baseline risk by 32.9% at 2 years and 16.5% at 5 years improved the calibration in 12/15 and 10/13 non-North American cohorts at 2 and 5 years, respectively (p=0.04 and p=0.02). Conclusions and Relevance KFREs developed in a Canadian population showed high discrimination and adequate calibration when validated in 31 multinational cohorts. However, in some regions the addition of a calibration factor may be necessary. PMID:26757465

The Origins of Human Interaction. The Van Zelst Lecture in Communication.

ERIC Educational Resources Information Center

Cappella, Joseph N.

In the field of communication studies the preeminent forms of explanation of human behavior have been the social and psychological, but biological origins may be as important to understanding human communication as are social origins. Communication research suggests a biological basis for certain patterns of adult interaction. Although these…

76 FR 19119 - Agency Information Collection Activities: Certificate of Origin

Federal Register 2010, 2011, 2012, 2013, 2014

2011-04-06

... Activities: Certificate of Origin AGENCY: U.S. Customs and Border Protection (CBP), Department of Homeland... concerning the Certificate of Origin (CBP Form 3229). This request for comment is being made pursuant to the... Management and Budget (OMB) approval. All comments will become a matter of public record. In this document...

12 CFR 202.5 - Rules concerning requests for information.

Code of Federal Regulations, 2010 CFR

2010-01-01

... origin, or sex. A creditor shall not inquire about the race, color, religion, national origin, or sex of..., religion, national origin, or sex of an applicant or any other person in connection with a credit... person. (2) Sex. An applicant may be requested to designate a title on an application form (such as Ms...

12 CFR 202.5 - Rules concerning requests for information.

Code of Federal Regulations, 2014 CFR

2014-01-01

... origin, or sex. A creditor shall not inquire about the race, color, religion, national origin, or sex of..., religion, national origin, or sex of an applicant or any other person in connection with a credit... person. (2) Sex. An applicant may be requested to designate a title on an application form (such as Ms...

12 CFR 202.5 - Rules concerning requests for information.

Code of Federal Regulations, 2013 CFR

2013-01-01

... origin, or sex. A creditor shall not inquire about the race, color, religion, national origin, or sex of..., religion, national origin, or sex of an applicant or any other person in connection with a credit... person. (2) Sex. An applicant may be requested to designate a title on an application form (such as Ms...

12 CFR 202.5 - Rules concerning requests for information.

Code of Federal Regulations, 2011 CFR

2011-01-01

... origin, or sex. A creditor shall not inquire about the race, color, religion, national origin, or sex of..., religion, national origin, or sex of an applicant or any other person in connection with a credit... person. (2) Sex. An applicant may be requested to designate a title on an application form (such as Ms...

12 CFR 202.5 - Rules concerning requests for information.

Code of Federal Regulations, 2012 CFR

2012-01-01

... origin, or sex. A creditor shall not inquire about the race, color, religion, national origin, or sex of..., religion, national origin, or sex of an applicant or any other person in connection with a credit... person. (2) Sex. An applicant may be requested to designate a title on an application form (such as Ms...

77 FR 59348 - Revisions to Page 700 of FERC Form No. 6

Federal Register 2010, 2011, 2012, 2013, 2014

2012-09-27

.... The components of an oil pipeline's rate base are governed by the Trended Original Cost Methodology... ratemaking methodology to the Trended Original Cost methodology as adopted in Opinion 154-B. The SRB was to... trended original cost methodology divides the nominal return on equity component of the cost of service...

Predictability of Road Traffic and Congestion in Urban Areas

PubMed Central

Wang, Jingyuan; Mao, Yu; Li, Jing; Xiong, Zhang; Wang, Wen-Xu

2015-01-01

Mitigating traffic congestion on urban roads, with paramount importance in urban development and reduction of energy consumption and air pollution, depends on our ability to foresee road usage and traffic conditions pertaining to the collective behavior of drivers, raising a significant question: to what degree is road traffic predictable in urban areas? Here we rely on the precise records of daily vehicle mobility based on GPS positioning device installed in taxis to uncover the potential daily predictability of urban traffic patterns. Using the mapping from the degree of congestion on roads into a time series of symbols and measuring its entropy, we find a relatively high daily predictability of traffic conditions despite the absence of any priori knowledge of drivers' origins and destinations and quite different travel patterns between weekdays and weekends. Moreover, we find a counterintuitive dependence of the predictability on travel speed: the road segment associated with intermediate average travel speed is most difficult to be predicted. We also explore the possibility of recovering the traffic condition of an inaccessible segment from its adjacent segments with respect to limited observability. The highly predictable traffic patterns in spite of the heterogeneity of drivers' behaviors and the variability of their origins and destinations enables development of accurate predictive models for eventually devising practical strategies to mitigate urban road congestion. PMID:25849534

Gene expression profiles help identify the tissue of origin for metastatic brain cancers.

PubMed

Wu, Alan H B; Drees, Julia C; Wang, Hangpin; VandenBerg, Scott R; Lal, Anita; Henner, William D; Pillai, Raji

2010-04-26

Metastatic brain cancers are the most common intracranial tumor and occur in about 15% of all cancer patients. In up to 10% of these patients, the primary tumor tissue remains unknown, even after a time consuming and costly workup. The Pathwork Tissue of Origin Test (Pathwork Diagnostics, Redwood City, CA, USA) is a gene expression test to aid in the diagnosis of metastatic, poorly differentiated and undifferentiated tumors. It measures the expression pattern of 1,550 genes in these tumors and compares it to the expression pattern of a panel of 15 known tumor types. The purpose of this study was to evaluate the performance of the Tissue of Origin Test in the diagnosis of primary sites for metastatic brain cancer patients. Fifteen fresh-frozen metastatic brain tumor specimens of known origins met specimen requirements. These specimens were entered into the study and processed using the Tissue of Origin Test. Results were compared to the known primary site and the agreement between the two results was assessed. Fourteen of the fifteen specimens produced microarray data files that passed all quality metrics. One originated from a tissue type that was off-panel. Among the remaining 13 cases, the Tissue of Origin Test accurately predicted the available diagnosis in 12/13 (92.3%) cases. This study demonstrates the accuracy of the Tissue of Origin Test when applied to predict the tissue of origin of metastatic brain tumors. This test could be a very useful tool for pathologists as they classify metastatic brain cancers.

Gene expression profiles help identify the Tissue of Origin for metastatic brain cancers

PubMed Central

2010-01-01

Background Metastatic brain cancers are the most common intracranial tumor and occur in about 15% of all cancer patients. In up to 10% of these patients, the primary tumor tissue remains unknown, even after a time consuming and costly workup. The Pathwork® Tissue of Origin Test (Pathwork Diagnostics, Redwood City, CA, USA) is a gene expression test to aid in the diagnosis of metastatic, poorly differentiated and undifferentiated tumors. It measures the expression pattern of 1,550 genes in these tumors and compares it to the expression pattern of a panel of 15 known tumor types. The purpose of this study was to evaluate the performance of the Tissue of Origin Test in the diagnosis of primary sites for metastatic brain cancer patients. Methods Fifteen fresh-frozen metastatic brain tumor specimens of known origins met specimen requirements. These specimens were entered into the study and processed using the Tissue of Origin Test. Results were compared to the known primary site and the agreement between the two results was assessed. Results Fourteen of the fifteen specimens produced microarray data files that passed all quality metrics. One originated from a tissue type that was off-panel. Among the remaining 13 cases, the Tissue of Origin Test accurately predicted the available diagnosis in 12/13 (92.3%) cases. Discussion This study demonstrates the accuracy of the Tissue of Origin Test when applied to predict the tissue of origin of metastatic brain tumors. This test could be a very useful tool for pathologists as they classify metastatic brain cancers. PMID:20420692