Effect of Strain Field on Threshold Displacement Energy of Tungsten Studied by Molecular Dynamics Simulation

DOE Office of Scientific and Technical Information (OSTI.GOV)

Wang, Dong; Gao, Ning; Setyawan, W.

The influence of strain field on defect formation energy and threshold displacement energy (Ed) in body-centered cubic (BCC) tungsten (W) has been studied with molecular dynamics simulations. Two different W potentials (Fikar and Juslin) were compared and the results indicate that the connection distance and selected function linking the short-range and long-range portions of the potentials affects the threshold displacement energy and its direction-specific values. The minimum Ed direction calculated with the Fikar-potential is <100> and with the Juslin-potential is <111>. Nevertheless, the most stable self-interstitial configuration is found to be a <111>-crowdion for both potentials. This stable configuration doesmore » not change with applied strain. Varying the strain from compression to tension increases the vacancy formation energy but decreases the self-interstitial formation energy. The formation energy of a self-interstitial changes more significantly than a vacancy such that Ed decreases with applied hydrostatic strain from compression to tension.« less

Could the electroweak scale be linked to the large scale structure of the Universe?

NASA Technical Reports Server (NTRS)

Chakravorty, Alak; Massarotti, Alessandro

1991-01-01

We study a model where the domain walls are generated through a cosmological phase transition involving a scalar field. We assume the existence of a coupling between the scalar field and dark matter and show that the interaction between domain walls and dark matter leads to an energy dependent reflection mechanism. For a simple Yakawa coupling, we find that the vacuum expectation value of the scalar field is theta approx. equals 30GeV - 1TeV, in order for the model to be successful in the formation of large scale 'pancake' structures.

EMSL Science Theme Advisory Panel Workshop - Atmospheric Aerosol Chemistry, Climate Change, and Air Quality

DOE Office of Scientific and Technical Information (OSTI.GOV)

Baer, Donald R.; Finlayson-Pitts, Barbara J.; Allen, Heather C.

2013-07-01

This report contains the workshop scope and recommendations from the workshop attendees in identifying scientific gaps in new particle formation, growth and properties of particles and reactions in and on particles as well as the laboratory-focused capabilities, field-deployable capabilities and modeling/theory tools along with linking of models to fundamental data.

All-atom Simulation of Amyloid Aggregates

NASA Astrophysics Data System (ADS)

Berhanu, Workalemahu M.; Alred, Erik J.; Bernhardt, Nathan A.; Hansmann, Ulrich H. E.

Molecular simulations are now commonly used to complement experiments in the investigation of amyloid formation and their role in human diseases. While various simulations based on enhanced sampling techniques are used in amyloid formation simulations, this article will focus on those using standard atomistic simulations to evaluate the stability of fibril models. Such studies explore the limitations that arise from the choice of force field or polymorphism; and explore the stability of in vivo and in vitro forms of Aβ fibril aggregates, and the role of heterologous seeding as a link between different amyloid diseases.

Ionic Modification Turns Commercial Rubber into a Self-Healing Material.

PubMed

Das, Amit; Sallat, Aladdin; Böhme, Frank; Suckow, Marcus; Basu, Debdipta; Wiessner, Sven; Stöckelhuber, Klaus Werner; Voit, Brigitte; Heinrich, Gert

2015-09-23

Invented by Charles Goodyear, chemical cross-linking of rubbers by sulfur vulcanization is the only method by which modern automobile tires are manufactured. The formation of these cross-linked network structures leads to highly elastic properties, which substantially reduces the viscous properties of these materials. Here, we describe a simple approach to converting commercially available and widely used bromobutyl rubber (BIIR) into a highly elastic material with extraordinary self-healing properties without using conventional cross-linking or vulcanising agents. Transformation of the bromine functionalities of BIIR into ionic imidazolium bromide groups results in the formation of reversible ionic associates that exhibit physical cross-linking ability. The reversibility of the ionic association facilitates the healing processes by temperature- or stress-induced rearrangements, thereby enabling a fully cut sample to retain its original properties after application of the self-healing process. Other mechanical properties, such as the elastic modulus, tensile strength, ductility, and hysteresis loss, were found to be superior to those of conventionally sulfur-cured BIIR. This simple and easy approach to preparing a commercial rubber with self-healing properties offers unique development opportunities in the field of highly engineered materials, such as tires, for which safety, performance, and longer fatigue life are crucial factors.

Where are Low Mass X-ray Binaries Formed?

NASA Astrophysics Data System (ADS)

Kundu, A.; Maccarone, T. J.; Zepf, S. E.

2004-08-01

Chandra images of nearby galaxies reveal large numbers of low mass X-ray binaries (LMXBs). As in the Galaxy, a significant fraction of these are associated with globular clusters. We exploit the LMXB-globular cluster link in order to probe both the physical properties of globular clusters that promote the formation of LMXBs within clusters with specific characteristics, and to study whether the non-cluster field LMXB population was originally formed in clusters and then released into the field. The large population of globular clusters around nearby galaxies and the range of properties such as age, metallicity and host galaxy environment spanned by these objects enables us to identify and probe the link between these characteristics and the formation of LMXBs. We present the results of our study of a large sample of elliptical and S0 galaxies which reveals among other things that bright LMXBs definitively prefer metal-rich cluster hosts and that this relationship is unlikely to be driven by age effects. The ancestry of the non-cluster field LMXBs is a matter of some debate with suggestions that they they might have formed in the field, or created in globular clusters and then subsequently released into the field either by being ejected from clusters by dynamical processes or as remnants of dynamically destroyed clusters. Each of these scenarios has a specific spatial signature that can be tested by our combined optical and X-ray study. Furthermore, these scenarios predict additional statistical variations that may be driven by the specific host galaxy environment. We present a detailed analysis of our sample galaxies and comment on the probability that the field sources were actually formed in clusters.

Effect of vortical structures on velocity and turbulent fields in the near region of an impinging turbulent jet

NASA Astrophysics Data System (ADS)

Yadav, Harekrishna; Agrawal, Amit

2018-03-01

This experimental study pertains to the formation of a secondary peak in heat transfer distribution for an axisymmetric turbulent impinging submerged jet. The analysis of instantaneous fields is undertaken at various Reynolds numbers based upon the bulk velocity and nozzle diameter (Re = 1300-10 000) and surface spacings (L/D = 0.25-6). Our analysis shows that flow separation and reattachment correspond to decrease/increase in local pressure and are caused by primary vortices; these are further linked to the location of maxima in streamwise and cross-stream velocities. It is further observed that the locations of maxima and minima in velocities are linked to fluctuations in rms velocities and thickening/thinning of the boundary layer. The vortices transported along the surface either coalesce among themselves or combine with other eddies to form a primary vortex. The primary vortex while getting convected downstream makes multiple interactions with the inner shear layer and causes waviness in instantaneous flow fields. In their later stage, the primary vortex moves away from the wall and accelerates, while the flow decelerates in the inner shear layer. The accelerated fluid in the outer shear layer pulls the downstream fluid from the inner shear layer and leads to the formation of a secondary vortex. After a certain distance downstream, the secondary vortex rolling between the primary vortex and the wall eventually breaks down, while the flow reattaches to the wall. The behavior of time average and instantaneous velocity fields suggests that unsteadiness in the heat transfer is linked to the location of maximum streamwise velocity, location of flow attachment, location of rms velocity, and thickness of the boundary layer. The instantaneous velocity fields show that for a given surface spacing, the chances for the appearance of the secondary vortex reduce with an increase in Reynolds number because of the reduction in space available for the secondary vortex to develop. It is further deduced that the strength of the secondary vortex is primarily dependent upon the strength of the primary vortex. However, the velocity field estimated using the linear stochastic estimation technique shows a tendency for the formation of the secondary vortex at higher Reynolds number, suggesting that most measurements do not resolve them well. Our analysis explains the reason for the appearance of the secondary peak in heat transfer distribution and helps resolve the contradictions in the literature regarding this phenomenon.

Autonomy in Action: Linking the Act of Looking to Memory Formation in Infancy via Dynamic Neural Fields

ERIC Educational Resources Information Center

Perone, Sammy; Spencer, John P.

2013-01-01

Looking is a fundamental exploratory behavior by which infants acquire knowledge about the world. In theories of infant habituation, however, looking as an exploratory behavior has been deemphasized relative to the reliable nature with which looking indexes active cognitive processing. We present a new theory that connects looking to the dynamics…

Daytime adaptive optics for deep space optical communications

NASA Technical Reports Server (NTRS)

Wilson, Keith; Troy, M.; Srinivasan, M.; Platt, B.; Vilnrotter, V.; Wright, M.; Garkanian, V.; Hemmati, H.

2003-01-01

The deep space optical communications subsystem offers a higher bandwidth communications link in smaller size, lower mass, and lower power consumption subsystem than does RF. To demonstrate the benefit of this technology to deep space communications NASA plans to launch an optical telecommunications package on the 2009 Mars Telecommunications orbiter spacecraft. Current performance goals are 30-Mbps from opposition, and 1-Mbps near conjunction (-3 degrees Sun-Earth-Probe angle). Yet, near conjunction the background noise from the day sky will degrade the performance of the optical link. Spectral and spatial filtering and higher modulation formats can mitigate the effects of background sky. Narrowband spectral filters can result in loss of link margin, and higher modulation formats require higher transmitted peak powers. In contrast, spatial filtering at the receiver has the potential of being lossless while providing the required sky background rejection. Adaptive optics techniques can correct wave front aberrations caused by atmospheric turbulence and enable near-diffraction-limited performance of the receiving telescope. Such performance facilitates spatial filtering, and allows the receiver field-of-view and hence the noise from the sky background to be reduced.

Atomic force microscopy investigation of chemically stabilized pericardium tissue.

PubMed

Jastrzebska, M; Barwinski, B; Mróz, I; Turek, A; Zalewska-Rejdak, J; Cwalina, B

2005-04-01

Native and chemically stabilized porcine pericardium tissue was imaged by the contact mode atomic force microscopy (AFM), in air. Chemically stabilized pericardium is used as a tissue-derived biomaterial in various fields of the reconstructive and replacement surgery. Collagen type I is the main component of the fibrous layer of the pericardium tissue. In this study, the surface topography of collagen fibrils in their native state in tissue and after chemical stabilization with different cross-linking reagents: glutaraldehyde (GA), dimethyl suberimidate (DMS) and tannic acid (TA) was investigated. It has been found that chemical stabilization causes considerable changes in the surface topography of collagen fibrils as well as in the spatial organization of the fibrils within the tissue. The observed changes in the D-spacing pattern of the collagen fibril correspond to the formation of intrafibrilar cross-links, whereas formation of interfibrilar cross-links is mainly responsible for the observed tangled spatial arrangement of fibrils and crimp structure of the tissue surface. The crimp structure was distinctly seen for the GA cross-linked tissue. Surface heterogeneity of the cross-linking process was observed for the DMS-stabilized tissue. SDS-PAGE electrophoresis was performed in order to evaluate the stabilization effect of the tissues treated with the cross-linking reagents. It has been found that stabilization with DMS, GA or TA enhances significantly the tissue resistance to SDS/NaCl extraction. The relation between the tissue stability and changes in the topography of the tissue surface was interpreted in terms of different nature of cross-links formed by DMS, GA and TA with collagen.

Microbial Enrichment from Six Hydraulic Fracturing Fluids and Biogeochemical Characteristics of Flowback Waters in Oklahoma Shale Formations

NASA Astrophysics Data System (ADS)

Krzmarzick, M. J.; McCutchan, A.; Carroll, J.; Lozano, T.

2017-12-01

Hydraulic fracturing of oil and gas formations has revolutionized the industry, but little is known regarding the interactions of the microbiology in formations and the hydraulic fracturing chemicals used. In the first part of this study, six representative hydraulic fracturing fluids were incubated in bench scale microcosms with surface soils over six months at 1× concentrations used in the field. These fluids differed greatly in terms of biocide, surfactants, corrosion inhibitors and crosslinking agents (if any). The changes in microbial communities were measured by Illumina 16S rRNA gene analysis and quantitative-PCR. As a whole, the microbial communities enriched were significantly varied between fluids, with the magnitude of the difference tightly linked to the total organic carbon of each fluid. Most enriched bacteria heavily grew within just the first couple of weeks, and belonged to genera well-linked to xenobiotic degradation, such as Azospirillum, Ralstonia, and Comamonas. This, combined with bulk parameters such as chemical oxygen demand of the water, indicates that a significant fraction of these fluids are readily degradable, though individual chemicals were not monitored for recalcitrance. In the second component of this work, the flowback waters from sixteen newly completed wells in south-central Oklahoma were monitored over two months for compositions of boron, dissolved solids, BTEX, chloride, and their microbial communities. As expected, dissolved solids increased over time as the flowback waters became more characteristic of the formation waters. In these wells, boron, a carefully measured component of the fracturing fluid for cross-linking applications, was either stable or increased over time. The microbial community characteristics are pending but will be compared between formations, to the chemical data, and to the results in the bench-top degradation study.

Toward link predictability of complex networks

PubMed Central

Lü, Linyuan; Pan, Liming; Zhou, Tao; Zhang, Yi-Cheng; Stanley, H. Eugene

2015-01-01

The organization of real networks usually embodies both regularities and irregularities, and, in principle, the former can be modeled. The extent to which the formation of a network can be explained coincides with our ability to predict missing links. To understand network organization, we should be able to estimate link predictability. We assume that the regularity of a network is reflected in the consistency of structural features before and after a random removal of a small set of links. Based on the perturbation of the adjacency matrix, we propose a universal structural consistency index that is free of prior knowledge of network organization. Extensive experiments on disparate real-world networks demonstrate that (i) structural consistency is a good estimation of link predictability and (ii) a derivative algorithm outperforms state-of-the-art link prediction methods in both accuracy and robustness. This analysis has further applications in evaluating link prediction algorithms and monitoring sudden changes in evolving network mechanisms. It will provide unique fundamental insights into the above-mentioned academic research fields, and will foster the development of advanced information filtering technologies of interest to information technology practitioners. PMID:25659742

The engram formation and the global oscillations of CA3.

PubMed

Ventriglia, Francesco

2008-12-01

The investigation on the conditions which cause global population oscillatory activities in neural fields, originated some years ago with reference to a kinetic theory of neural systems, as been further deepened in this paper. In particular, the genesis of sharp waves and of some rhythmic activities, such as theta and gamma rhythms, of the hippocampal CA3 field, behaviorally important for their links to learning and memory, has been analyzed with more details. To this aim, the modeling-computational framework previously devised for the study of activities in large neural fields, has been enhanced in such a way that a greater number of biological features, extended dendritic trees-in particular, could be taken into account. By using that methodology, a two-dimensional model of the entire CA3 field has been described and its activity, as it results from the several external inputs impinging on it, has been simulated. As a consequence of these investigations, some hypotheses have been elaborated about the possible function of global oscillatory activities of neural populations of Hippocampus in the engram formation.

Gaseous infall and star formation from redshift 2 to the Milky Way

NASA Astrophysics Data System (ADS)

Hill, Alex

2015-10-01

We propose to model magnetized gas as it flows into galaxy disks in Milky Way-like and redshift 2 environments in order to understand the pc to kpc scale physics that control a crucial link in galaxy evolution: how do galaxies get the gas which sustains star formation over cosmic time? UV observations with the Cosmic Origins Spectrograph (COS) on HST have demonstrated that star-forming galaxies have baryonic halos much more massive than the galaxies themselves; these halos are most likely a link in the evolution of galaxies as cosmological filaments feed ongoing star formation in galactic disks. However, the galaxy formation simulations that support this hypothesis do not resolve the parsec-scale hydrodynamic processes which determine if and how the gas in the halo can reach the disk. To address this theoretical disconnect, we will conduct magnetohydrodynamic simulations in which these clouds fall under the galactic potential into a state-of-the-art simulation of the three-phase interstellar medium in the galactic disk. We will leverage recent HST and radio observations of accreting clouds around the Milky Way to set the initial conditions of the gas, including magnetic fields and metallicity. Our results will connect the HST metallicity measurements directly to the impact of gaseous galactic halos and infall on galaxy evolution and the star formation history of the Universe.

D2+ Molecular complex in non-uniform height quantum ribbon under crossed electric and magnetic fields

NASA Astrophysics Data System (ADS)

Suaza, Y. A.; Laroze, D.; Fulla, M. R.; Marín, J. H.

2018-05-01

The D2+ molecular complex fundamental properties in a uniform and multi-hilled semiconductor quantum ribbon under orthogonal electric and magnetic fields are theoretically studied. The energy structure is calculated by using adiabatic approximation combined with diagonalization procedure. The D2+ energy structure is more strongly controlled by the geometrical structural hills than the Coulomb interaction. The formation of vibrational and rotational states is discussed. Aharanov-Bohm oscillation patterns linked to rotational states as well as the D2+ molecular complex stability are highly sensitive to the number of hills while electric field breaks the electron rotational symmetry and removes the energy degeneration between low-lying states.

Probing star formation in the dense environments of z ˜ 1 lensing haloes aligned with dusty star-forming galaxies detected with the South Pole Telescope

NASA Astrophysics Data System (ADS)

Welikala, N.; Béthermin, M.; Guery, D.; Strandet, M.; Aird, K. A.; Aravena, M.; Ashby, M. L. N.; Bothwell, M.; Beelen, A.; Bleem, L. E.; de Breuck, C.; Brodwin, M.; Carlstrom, J. E.; Chapman, S. C.; Crawford, T. M.; Dole, H.; Doré, O.; Everett, W.; Flores-Cacho, I.; Gonzalez, A. H.; González-Nuevo, J.; Greve, T. R.; Gullberg, B.; Hezaveh, Y. D.; Holder, G. P.; Holzapfel, W. L.; Keisler, R.; Lagache, G.; Ma, J.; Malkan, M.; Marrone, D. P.; Mocanu, L. M.; Montier, L.; Murphy, E. J.; Nesvadba, N. P. H.; Omont, A.; Pointecouteau, E.; Puget, J. L.; Reichardt, C. L.; Rotermund, K. M.; Scott, D.; Serra, P.; Spilker, J. S.; Stalder, B.; Stark, A. A.; Story, K.; Vanderlinde, K.; Vieira, J. D.; Weiß, A.

2016-01-01

We probe star formation in the environments of massive (˜1013 M⊙) dark matter haloes at redshifts of z ˜ 1. This star formation is linked to a submillimetre clustering signal which we detect in maps of the Planck High Frequency Instrument that are stacked at the positions of a sample of high redshift (z > 2) strongly lensed dusty star-forming galaxies (DSFGs) selected from the South Pole Telescope (SPT) 2500 deg2 survey. The clustering signal has submillimetre colours which are consistent with the mean redshift of the foreground lensing haloes (z ˜ 1). We report a mean excess of star formation rate (SFR) compared to the field, of (2700 ± 700) M⊙ yr-1 from all galaxies contributing to this clustering signal within a radius of 3.5 arcmin from the SPT DSFGs. The magnitude of the Planck excess is in broad agreement with predictions of a current model of the cosmic infrared background. The model predicts that 80 per cent of the excess emission measured by Planck originates from galaxies lying in the neighbouring haloes of the lensing halo. Using Herschel maps of the same fields, we find a clear excess, relative to the field, of individual sources which contribute to the Planck excess. The mean excess SFR compared to the field is measured to be (370 ± 40) M⊙ yr-1 per resolved, clustered source. Our findings suggest that the environments around these massive z ˜ 1 lensing haloes host intense star formation out to about 2 Mpc. The flux enhancement due to clustering should also be considered when measuring flux densities of galaxies in Planck data.

Links Between the Deep Western Boundary Current, Labrador Sea Water Formation and Export, and the Meridional Overturning Circulation

NASA Astrophysics Data System (ADS)

Myers, Paul G.; Kulan, Nilgun

2010-05-01

Based on an isopyncal analysis of historical data, 3-year overlapping triad fields of objectively analysed temperature and salinity are produced for the Labrador Sea, covering 1949-1999. These fields are then used to spectrally nudge an eddy-permitting ocean general circulation model of the sub-polar gyre, otherwise forced by inter annually varying surface forcing based upon the Coordinated Ocean Reference Experiment (CORE). High frequency output from the reanalysis is used to examine Labrador Sea Water formation and its export. A number of different apprpoaches are used to estimate Labrador Sea Water formation, including an instanteous kinematic approach to calculate the annual rate of water mass subduction at a given density range. Historical transports are computed along sections at 53 and 56N for several different water masses for comparison with recent observations, showing a decline in the stength of the deep western boundary current with time. The variability of the strength of the meridional overturning circulation (MOC) from the reanalysis is also examined in both depth and density space. Linkages between MOC variability and water mass formation variability is considered.

Molecular Effects of Neonicotinoids in Honey Bees (Apis mellifera).

PubMed

Christen, Verena; Mittner, Fabian; Fent, Karl

2016-04-05

Neonicotinoids are implicated in the decline of bee populations. As agonists of nicotinic acetylcholine receptors, they disturb acetylcholine receptor signaling leading to neurotoxicity. Several behavioral studies showed the link between neonicotinoid exposure and adverse effects on foraging activity and reproduction. However, molecular effects underlying these effects are poorly understood. Here we elucidated molecular effects at environmental realistic levels of three neonicotinoids and nicotine, and compared laboratory studies to field exposures with acetamiprid. We assessed transcriptional alterations of eight selected genes in caged honey bees exposed to different concentrations of the neonicotinoids acetamiprid, clothianidin, imidacloporid, and thiamethoxam, as well as nicotine. We determined transcripts of several targets, including nicotinic acetylcholine receptor α 1 and α 2 subunit, the multifunctional gene vitellogenin, immune system genes apidaecin and defensin-1, stress-related gene catalase and two genes linked to memory formation, pka and creb. Vitellogenin showed a strong increase upon neonicotinoid exposures in the laboratory and field, while creb and pka transcripts were down-regulated. The induction of vitellogenin suggests adverse effects on foraging activity, whereas creb and pka down-regulation may be implicated in decreased long-term memory formation. Transcriptional alterations occurred at environmental concentrations and provide an explanation for the molecular basis of observed adverse effects of neonicotinoids to bees.

Correlation between piezoresponse nonlinearity and hysteresis in ferroelectric crystals at nanoscale

DOE PAGES

Kalinin, Sergei V.; Jesse, Stephen; Yang, Yaodong; ...

2016-04-27

Here, the nonlinear response of a ferroic to external fields has been studied for decades, garnering interest for both understanding fundamental physics, as well as technological applications such as memory devices. Yet, the behavior of ferroelectrics at mesoscopic regimes remains poorly understood, and the scale limits of theories developed for macroscopic regimes are not well tested experimentally. Here, we test the link between piezo-nonlinearity and local piezoelectric strain hysteresis, via AC-field dependent measurements in conjunction with first order reversal curve (FORC) measurements on (K,Na)NbO 3 crystals with band-excitation piezoelectric force microscopy. The correlation coefficient between nonlinearity amplitude and the FORCmore » of the polarization switching shows a clear decrease in correlation with increasing AC bias, suggesting the impact of domain wall clamping on the DC measurement case. Further, correlation of polynomial fitting terms from the nonlinear measurements with the hysteresis loop area reveals that the largest correlations are reserved for the quadratic terms, which is expected for irreversible domain wall motion contributions that impact both piezoelectric behavior as well as minor loop formation. These confirm the link between local piezoelectric nonlinearity, domain wall motion and minor loop formation, and suggest that existing theories (such as Preisach) are applicable at these length scales, with associated implications for future nanoscale devices.« less

DOE Office of Scientific and Technical Information (OSTI.GOV)

Kalinin, Sergei V.; Jesse, Stephen; Yang, Yaodong

Here, the nonlinear response of a ferroic to external fields has been studied for decades, garnering interest for both understanding fundamental physics, as well as technological applications such as memory devices. Yet, the behavior of ferroelectrics at mesoscopic regimes remains poorly understood, and the scale limits of theories developed for macroscopic regimes are not well tested experimentally. Here, we test the link between piezo-nonlinearity and local piezoelectric strain hysteresis, via AC-field dependent measurements in conjunction with first order reversal curve (FORC) measurements on (K,Na)NbO 3 crystals with band-excitation piezoelectric force microscopy. The correlation coefficient between nonlinearity amplitude and the FORCmore » of the polarization switching shows a clear decrease in correlation with increasing AC bias, suggesting the impact of domain wall clamping on the DC measurement case. Further, correlation of polynomial fitting terms from the nonlinear measurements with the hysteresis loop area reveals that the largest correlations are reserved for the quadratic terms, which is expected for irreversible domain wall motion contributions that impact both piezoelectric behavior as well as minor loop formation. These confirm the link between local piezoelectric nonlinearity, domain wall motion and minor loop formation, and suggest that existing theories (such as Preisach) are applicable at these length scales, with associated implications for future nanoscale devices.« less

Required, tissue-specific roles for Fgf8 in outflow tract formation and remodeling.

PubMed

Park, Eon Joo; Ogden, Lisa A; Talbot, Amy; Evans, Sylvia; Cai, Chen-Leng; Black, Brian L; Frank, Deborah U; Moon, Anne M

2006-06-01

Fibroblast growth factor 8 (Fgf8) is a secreted signaling protein expressed in numerous temporospatial domains that are potentially relevant to cardiovascular development. However, the pathogenesis of complex cardiac and outflow tract defects observed in Fgf8-deficient mice, and the specific source(s) of Fgf8 required for outflow tract formation and subsequent remodeling are unknown. A detailed examination of the timing and location of Fgf8 production revealed previously unappreciated expression in a subset of primary heart field cells; Fgf8 is also expressed throughout the anterior heart field (AHF) mesoderm and in pharyngeal endoderm at the crescent and early somite stages. We used conditional mutagenesis to examine the requirements for Fgf8 function in these different expression domains during heart and outflow tract morphogenesis. Formation of the primary heart tube and the addition of right ventricular and outflow tract myocardium depend on autocrine Fgf8 signaling in cardiac crescent mesoderm. Loss of Fgf8 in this domain resulted in decreased expression of the Fgf8 target gene Erm, and aberrant production of Isl1 and its target Mef2c in the anterior heart field, thus linking Fgf8 signaling with transcription factor networks that regulate survival and proliferation of the anterior heart field. We further found that mesodermal- and endodermal-derived Fgf8 perform specific functions during outflow tract remodeling: mesodermal Fgf8 is required for correct alignment of the outflow tract and ventricles, whereas activity of Fgf8 emanating from pharyngeal endoderm regulates outflow tract septation. These findings provide a novel insight into how the formation and remodeling of primary and anterior heart field-derived structures rely on Fgf8 signals from discrete temporospatial domains.

The formation of low-angle eolian stratification through the migration of protodunes

NASA Astrophysics Data System (ADS)

Ewing, R. C.; Phillips, J. D.; Weymer, B. A.; Barrineaux, P.; Bowling, R.; Nittrouer, J. A.

2017-12-01

Protodunes are low-relief, slipfaceless migrating bed forms that represent the emergent form of eolian sand dunes. Protodunes develop as cm-scale topography out of a flat bed of sand and evolve spatially and temporally into dunes with angle-of-repose slipfaces. Protodunes at White Sands Dune Field in New Mexico form at the upwind, trailing margin of the field, on dune stoss slopes, and in interdune areas. Here we analyze protodunes at the upwind margin of White Sands by coupling 200 mHz ground penetrating radar (GPR) with time-series high-resolution topography to characterize the origin and evolution of protodune stratification and the stratigraphic transition into fully developed dunes. We surveyed a 780m transect in the resultant transport direction of the dune field from SW to NE from sand patches through protodunes and into the first dune. We used airborne lidar surveys and structure-from-motion photogrammetry from 2007, 2008, 2009, 2010, 2015, and 2016. We find that protodune stratification forms at angles between 0-10 degrees by protodune migration. Dip angles increase as protodune amplitude increases along the transect. Accumulation of low-angle stratification increases across the first 650m and ranges from none to subcritical. Nearly aggradational accumulation of low-angle stratification occurs over the last 100m and is a precursor to angle-of-repose slipface formation. The origins of the aggradation and slipface development appear to be linked to protodune merging, dune interactions, and possibly to the development of a dune field-scale boundary layer. Protodunes and the formation of low-angle stratification at the upwind margin of White Sands are a good analog to the initiation of dune field development from sand sheets and the formation of low-angle stratification found at the base of eolian successions in the stratigraphic record.

Combustion and structure formation in SHS processes under microgravity conditions: SHS plans for microgravity experiments

NASA Technical Reports Server (NTRS)

Merzhanov, A. G.

1995-01-01

This paper outlines ISMAN suggestions for the joint NASA-RSA project 'Combustion and Structure formation in SHS Processes under Microgravity Conditions'. The basic ideas of this work naturally follow from our almost 30-year experience in the field of SHS. As a matter of fact, we have already obtained some results in the following two directions closely related to the microgravity problem. One is the studies on SHS processes in the field of centrifugal forces. These studies aimed at the intensification of gravity-sensitive SHS processes in multicomponent highly caloric systems forming melts at high overloads (up to 2000 g). In other words, these studies had the objectives that are inverse to those in the microgravity studies. The second group of results directly relates to the microgravity problem and the project under consideration. These experiments played the important role in establishing links between SHS and microgravity.

Correlations between Community Structure and Link Formation in Complex Networks

PubMed Central

Liu, Zhen; He, Jia-Lin; Kapoor, Komal; Srivastava, Jaideep

2013-01-01

Background Links in complex networks commonly represent specific ties between pairs of nodes, such as protein-protein interactions in biological networks or friendships in social networks. However, understanding the mechanism of link formation in complex networks is a long standing challenge for network analysis and data mining. Methodology/Principal Findings Links in complex networks have a tendency to cluster locally and form so-called communities. This widely existed phenomenon reflects some underlying mechanism of link formation. To study the correlations between community structure and link formation, we present a general computational framework including a theory for network partitioning and link probability estimation. Our approach enables us to accurately identify missing links in partially observed networks in an efficient way. The links having high connection likelihoods in the communities reveal that links are formed preferentially to create cliques and accordingly promote the clustering level of the communities. The experimental results verify that such a mechanism can be well captured by our approach. Conclusions/Significance Our findings provide a new insight into understanding how links are created in the communities. The computational framework opens a wide range of possibilities to develop new approaches and applications, such as community detection and missing link prediction. PMID:24039818

The Multifaceted Osteoclast; Far and Beyond Bone Resorption.

PubMed

Drissi, Hicham; Sanjay, Archana

2016-08-01

The accepted function of the bone resorbing cell, osteoclast, has been linked to bone remodeling and pathological osteolysis. Emerging evidence points to novel functions of osteoclasts in controlling bone formation and angiogenesis. Thus, while the concept of a "clastokine" with the potential to regulate osteogenesis during remodeling did not come as a surprise, new evidence provided unique insight into the mechanisms underlying osteoclastic control of bone formation. The question still remains as to whether osteoclast precursors or a unique trap positive mononuclear cell, can govern any aspect of bone formation. The novel paradigm eloquently proposed by leaders in the field brings together the concept of clastokines and osteoclast precursor-mediated bone formation, potentially though enhanced angiogenesis. These fascinating advances in osteoclast biology have motivated this short review, in which we discuss these new roles of osteoclasts. J. Cell. Biochem. 117: 1753-1756, 2016. © 2016 Wiley Periodicals, Inc. © 2016 Wiley Periodicals, Inc.

S0 galaxies are faded spirals: clues from their angular momentum content

NASA Astrophysics Data System (ADS)

Rizzo, Francesca; Fraternali, Filippo; Iorio, Giuliano

2018-05-01

The distribution of galaxies in the stellar specific angular momentum versus stellar mass plane (j⋆ - M⋆) provides key insights into their formation mechanisms. In this paper, we determine the location in this plane of a sample of 10 field/group unbarred lenticular (S0) galaxies from the Calar Alto Legacy Integral Field Area survey. We performed a bulge-disc decomposition both photometrically and kinematically to study the stellar specific angular momentum of the disc components alone and understand the evolutionary links between S0s and other Hubble types. We found that eight of our S0 discs have a distribution in the j⋆ - M⋆ plane that is fully compatible with that of spiral discs, while only two have values of j⋆ lower than the spirals. These two outliers show signs of recent merging. Our results suggest that merger and interaction processes are not the dominant mechanisms in S0 formation in low-density environments. Instead, S0s appear to be the result of secular processes and the fading of spiral galaxies after the shutdown of star formation.

Magnetoconductance signatures of chiral domain-wall bound states in magnetic topological insulators

NASA Astrophysics Data System (ADS)

Tiwari, Kunal L.; Coish, W. A.; Pereg-Barnea, T.

2017-12-01

Recent magnetoconductance measurements performed on magnetic topological insulator candidates have revealed butterfly-shaped hysteresis. This hysteresis has been attributed to the formation of gapless chiral domain-wall bound states during a magnetic-field sweep. We treat this phenomenon theoretically, providing a link between microscopic magnetization dynamics and butterfly hysteresis in magnetoconductance. Further, we illustrate how a spatially resolved conductance measurement can probe the most striking feature of the domain-wall bound states: their chirality. This work establishes a regime where a definitive link between butterfly hysteresis in longitudinal magneto-conductance and domain-wall bound states can be made. This analysis provides an important tool for the identification of magnetic topological insulators.

Formation of a three-dimensional plasma boundary after decay of the plasma response to resonant magnetic perturbation fields

NASA Astrophysics Data System (ADS)

Schmitz, O.; Evans, T. E.; Fenstermacher, M. E.; Lanctot, M. J.; Lasnier, C. L.; Mordijck, S.; Moyer, R. A.; Reimerdes, H.; the DIII-D Team

2014-01-01

First time experimental evidence is presented for a direct link between the decay of a n = 3 plasma response and the formation of a three-dimensional (3D) plasma boundary. We inspect a lower single-null L-mode plasma which first reacts at sufficiently high rotation with an ideal resonant screening response to an external toroidal mode number n = 3 resonant magnetic perturbation field. Decay of this response due to reduced bulk plasma rotation changes the plasma state considerably. Signatures such as density pump out and a spin up of the edge rotation—which are usually connected to formation of a stochastic boundary—are detected. Coincident, striation of the divertor single ionized carbon emission and a 3D emission structure in double ionized carbon at the separatrix is seen. The striated C II pattern follows in this stage the perturbed magnetic footprint modelled without a plasma response (vacuum approach). This provides for the first time substantial experimental evidence, that a 3D plasma boundary with direct impact on the divertor particle flux pattern is formed as soon as the internal plasma response decays. The resulting divertor structure follows the vacuum modelled magnetic field topology. However, the inward extension of the perturbed boundary layer can still not directly be determined from these measurements.

Membrane adhesion and the formation of heterogeneities: biology, biophysics, and biotechnology.

PubMed

Gordon, V D; O'Halloran, T J; Shindell, O

2015-06-28

Membrane adhesion is essential to many vital biological processes. Sites of membrane adhesion are often associated with heterogeneities in the lipid and protein composition of the membrane. These heterogeneities are thought to play functional roles by facilitating interactions between proteins. However, the causal links between membrane adhesion and membrane heterogeneities are not known. Here we survey the state of the field and indicate what we think are understudied areas ripe for development.

The Caltech experimental investigation of fast 3D non-equilbrium dynamics: an overview

NASA Astrophysics Data System (ADS)

Bellan, Paul; Shikama, Taiichi; Chai, Kilbyoung; Ha, Bao; Chaplin, Vernon; Kendall, Mark; Moser, Auna; Stenson, Eve; Tobin, Zachary; Zhai, Xiang

2012-10-01

The formation and dynamics of writhing, plasma-filled, twisted open magnetic flux tubes is being investigated using pulsed-power laboratory experiments. This work is relevant to solar corona loops, astrophysical jets, spheromak formation, and open field lines in tokamaks and RFP's. MHD forces have been observed to drive fast axial plasma flows into the flux tube from the boundary it intercepts. These flows fill the flux tube with plasma while simultaneously injecting linked frozen-in azimuthal flux; helicity injection is thus associated with mass injection. Recent results include observation of a secondary instability (Rayleigh-Taylor driven by the effective gravity of an exponentially growing kink mode), color-coded plasmas manifesting bidirectional axial flows in a geometry similar to a solar corona loop, and spectroscopic measurements of the internal vector magnetic field. Experiments underway include investigating how an external magnetic field straps down a solar loop, investigation of the details of the Rayleigh-Taylor instability, development of a fast EUV movie camera, increasing the jet velocity, excitation of Alfven waves, and investigating 3D magnetic reconnection.

Amphitheater-headed canyons formed by megaflooding at Malad Gorge, Idaho

PubMed Central

Lamb, Michael P.; Mackey, Benjamin H.; Farley, Kenneth A.

2014-01-01

Many bedrock canyons on Earth and Mars were eroded by upstream propagating headwalls, and a prominent goal in geomorphology and planetary science is to determine formation processes from canyon morphology. A diagnostic link between process and form remains highly controversial, however, and field investigations that isolate controls on canyon morphology are needed. Here we investigate the origin of Malad Gorge, Idaho, a canyon system cut into basalt with three remarkably distinct heads: two with amphitheater headwalls and the third housing the active Wood River and ending in a 7% grade knickzone. Scoured rims of the headwalls, relict plunge pools, sediment-transport constraints, and cosmogenic (3He) exposure ages indicate formation of the amphitheater-headed canyons by large-scale flooding ∼46 ka, coeval with formation of Box Canyon 18 km to the south as well as the eruption of McKinney Butte Basalt, suggesting widespread canyon formation following lava-flow diversion of the paleo-Wood River. Exposure ages within the knickzone-headed canyon indicate progressive upstream younging of strath terraces and a knickzone propagation rate of 2.5 cm/y over at least the past 33 ka. Results point to a potential diagnostic link between vertical amphitheater headwalls in basalt and rapid erosion during megaflooding due to the onset of block toppling, rather than previous interpretations of seepage erosion, with implications for quantifying the early hydrosphere of Mars. PMID:24344293

Lock-in of a Chiral Soliton Lattice by Itinerant Electrons

NASA Astrophysics Data System (ADS)

Okumura, Shun; Kato, Yasuyuki; Motome, Yukitoshi

2018-03-01

Chiral magnets often show intriguing magnetic and transport properties associated with their peculiar spin textures. A typical example is a chiral soliton lattice, which is found in monoaxial chiral magnets, such as CrNb3S6 and Yb(Ni1-xCux)3Al9 in an external magnetic field perpendicular to the chiral axis. Here, we theoretically investigate the electronic and magnetic properties in the chiral soliton lattice by a minimal itinerant electron model. Using variational calculations, we find that the period of the chiral soliton lattice can be locked at particular values dictated by the Fermi wave number, in stark contrast to spin-only models. We discuss this behavior caused by the spin-charge coupling as a possible mechanism for the lock-in discovered in Yb(Ni1-xCux)3Al9 [T. Matsumura et al., J. Phys. Soc. Jpn. 86, 124702 (2017)]. We also show that the same mechanism leads to the spontaneous formation of the chiral soliton lattice even in the absence of the magnetic field.

Potential Theory for Directed Networks

PubMed Central

Zhang, Qian-Ming; Lü, Linyuan; Wang, Wen-Qiang; Zhou, Tao

2013-01-01

Uncovering factors underlying the network formation is a long-standing challenge for data mining and network analysis. In particular, the microscopic organizing principles of directed networks are less understood than those of undirected networks. This article proposes a hypothesis named potential theory, which assumes that every directed link corresponds to a decrease of a unit potential and subgraphs with definable potential values for all nodes are preferred. Combining the potential theory with the clustering and homophily mechanisms, it is deduced that the Bi-fan structure consisting of 4 nodes and 4 directed links is the most favored local structure in directed networks. Our hypothesis receives strongly positive supports from extensive experiments on 15 directed networks drawn from disparate fields, as indicated by the most accurate and robust performance of Bi-fan predictor within the link prediction framework. In summary, our main contribution is twofold: (i) We propose a new mechanism for the local organization of directed networks; (ii) We design the corresponding link prediction algorithm, which can not only testify our hypothesis, but also find out direct applications in missing link prediction and friendship recommendation. PMID:23408979

Electrical conduction of a XLPE nanocomposite

NASA Astrophysics Data System (ADS)

Park, Yong-Jun; Sim, Jae-Yong; Lim, Kee-Joe; Nam, Jin-Ho; Park, Wan-Gi

2014-07-01

The resistivity, breakdown strength, and formation of space charges are very important factors for insulation design of HVDC cable. It is known that a nano-sized metal-oxide inorganic filler reduces the formation of space charges in the polymer nanocomposite. Electrical conduction of cross-linked polyethylene(XLPE) nanocomposite insulating material is investigated in this paper. The conduction currents of two kinds of XLPE nanocomposites and XLPE without nano-filler were measured at temperature of 303 ~ 363 K under the applied electric fields of 10 ~ 50 kV/mm. The current of the nanocomposite specimen is smaller than that of XLPE specimen without nano-filler. The conduction mechanism may be explained in terms of Schottky emission and multi-core model.

Acrylamide: formation, occurrence in food products, detection methods, and legislation.

PubMed

Arvanitoyannis, Ioannis S; Dionisopoulou, Niki

2014-01-01

This review aims at summarizing the most recent updates in the field of acrylamide (AA) formation (mechanism, conditions) and the determination of AA in a number of foods (fried or baked potatoes, chips, coffee, bread, etc). The methods applied for AA detection [Capillary Electrophoresis-Mass Spectrometry (CE-MS), Liquid Chromatography-Mass Spectrometry (LC-MS), Non-Aqueous Capillary Electrophoresis (NACE), High Performance Liquid Chromatography-Mass Spectrometry (HPLC-MS), Pressurized Fluid Extraction (PFE), Matrix Solid-Phase Dispersion (MSPD), Gas Chromatography-Mass Spectrometry (GC-MS), Solid-Phase MicroExtraction-Gas Chromatography (SPME-GC), Enzyme Linked Immunosorbent Assay (ELISA), and MicroEmulsion ElectroKinetic Chromatography (MEEKC) are presented and commented. Several informative figures and tables are included to show the effect of conditions (temperature, time) on the AA formation. A section is also included related to AA legislation in EU and US.

The effects of link format and screen location on visual search of web pages.

PubMed

Ling, Jonathan; Van Schaik, Paul

2004-06-22

Navigation of web pages is of critical importance to the usability of web-based systems such as the World Wide Web and intranets. The primary means of navigation is through the use of hyperlinks. However, few studies have examined the impact of the presentation format of these links on visual search. The present study used a two-factor mixed measures design to investigate whether there was an effect of link format (plain text, underlined, bold, or bold and underlined) upon speed and accuracy of visual search and subjective measures in both the navigation and content areas of web pages. An effect of link format on speed of visual search for both hits and correct rejections was found. This effect was observed in the navigation and the content areas. Link format did not influence accuracy in either screen location. Participants showed highest preference for links that were in bold and underlined, regardless of screen area. These results are discussed in the context of visual search processes and design recommendations are given.

Membrane adhesion and the formation of heterogeneities: biology, biophysics, and biotechnology

PubMed Central

Gordon, V. D.; O’Halloran, T.J.; Shindell, O.

2015-01-01

Membrane adhesion is essential to many vital biological processes. Sites of membrane adhesion are often associated with heterogeneities in the lipid and protein composition of the membrane. These heterogeneities are thought to play functional roles by facilitating interactions between proteins. However, the causal links between membrane adhesion and membrane heterogeneities are not known. Here we survey the state of the field and indicate what we think are understudied areas ripe for development. PMID:25866854

Geologic Controls on the Growth of Petroleum Reserves

USGS Publications Warehouse

Fishman, Neil S.; Turner, Christine E.; Peterson, Fred; Dyman, Thaddeus S.; Cook, Troy

2008-01-01

The geologic characteristics of selected siliciclastic (largely sandstone) and carbonate (limestone and dolomite) reservoirs in North America (largely the continental United States) were investigated to improve our understanding of the role of geology in the growth of petroleum reserves. Reservoirs studied were deposited in (1) eolian environments (Jurassic Norphlet Formation of the Gulf Coast and Pennsylvanian-Permian Minnelusa Formation of the Powder River Basin), (2) interconnected fluvial, deltaic, and shallow marine environments (Oligocene Frio Formation of the Gulf Coast and the Pennsylvanian Morrow Formation of the Anadarko and Denver Basins), (3) deeper marine environments (Mississippian Barnett Shale of the Fort Worth Basin and Devonian-Mississippian Bakken Formation of the Williston Basin), (4) marine carbonate environments (Ordovician Ellenburger Group of the Permian Basin and Jurassic Smackover Formation of the Gulf of Mexico Basin), (5) a submarine fan environment (Permian Spraberry Formation of the Midland Basin), and (6) a fluvial environment (Paleocene-Eocene Wasatch Formation of the Uinta-Piceance Basin). The connection between an oil reservoir's production history and geology was also evaluated by studying production histories of wells in disparate reservoir categories and wells in a single formation containing two reservoir categories. This effort was undertaken to determine, in general, if different reservoir production heterogeneities could be quantified on the basis of gross geologic differences. It appears that reserve growth in existing fields is most predictable for those in which reservoir heterogeneity is low and thus production differs little between wells, probably owing to relatively homogeneous fluid flow. In fields in which reservoirs are highly heterogeneous, prediction of future growth from infill drilling is notably more difficult. In any case, success at linking heterogeneity to reserve growth depends on factors in addition to geology, such as engineering and technological advances and political or cultural or economic influences.

Enhanced levels of atmospheric low-molecular weight monocarboxylic acids in gas and particulates over Mt. Tai, North China, during field burning of agricultural wastes

NASA Astrophysics Data System (ADS)

Mochizuki, Tomoki; Kawamura, Kimitaka; Nakamura, Shinnosuke; Kanaya, Yugo; Wang, Zifa

2017-12-01

To understand the source and atmospheric behaviour of low molecular weight monocarboxylic acids (monoacids), gaseous (G) and particulate (P) organic acids were collected at the summit of Mt. Tai in the North China Plain (NCP) during field burning of agricultural waste (wheat straw). Particulate organic acids were collected with neutral quartz filter whereas gaseous organic acids were collected with KOH-impregnated quartz filter. Normal (C1-C10), branched (iC4-iC6), hydroxy (lactic and glycolic), and aromatic (benzoic) monoacids were determined with a capillary gas chromatography employing p-bromophenacyl esters. We found acetic acid as the most abundant gas-phase species whereas formic acid is the dominant particle-phase species. Concentrations of formic (G/P 1 570/1 410 ng m-3) and acetic (3 960/1 120 ng m-3) acids significantly increased during the enhanced field burning of agricultural wastes. Concentrations of formic and acetic acids in daytime were found to increase in both G and P phases with those of K+, a field-burning tracer (r = 0.32-0.64). Primary emission and secondary formation of acetic acid is linked with field burning of agricultural wastes. In addition, we found that particle-phase fractions (Fp = P/(G + P)) of formic (0.50) and acetic (0.31) acids are significantly high, indicating that semi-volatile organic acids largely exist as particles. Field burning of agricultural wastes may play an important role in the formation of particulate monoacids in the NCP. High levels (917 ng m-3) of particle-phase lactic acid, which is characteristic of microorganisms, suggest that microbial activity associated with terrestrial ecosystem significantly contributes to the formation of organic aerosols.

Spatial regression between soil surface elevation, water storage in root zone and biomass productivity of alfalfa within an irrigated field

NASA Astrophysics Data System (ADS)

Zeyliger, Anatoly; Ermolaeva, Olga

2014-05-01

Efficiency of water use for the irrigation purposes is connected to the variety of circumstances, factors and processes appearing along the transportation path of water from its sources to the root zone of the plant. Water efficiency of agricultural irrigation is connected with variety of circumstances, the impacts and the processes occurring during the transportation of water from water sources to plant root zone. Agrohydrological processes occur directly at the irrigated field, these processes linked to the infiltration of the applied water subsequent redistribution of the infiltrated water within the root zone. One of them are agrohydrological processes occurring directly on an irrigated field, connected with infiltration of water applied for irrigation to the soil, and the subsequent redistribution of infiltrated water in the root zone. These processes have the strongly pronounced spatial character depending on the one hand from a spatial variation of some hydrological characteristics of soils, and from other hand with distribution of volume of irrigation water on a surface of the area of an irrigated field closely linked with irrigation technology used. The combination of water application parameters with agrohydrological characteristics of soils and agricultural vegetation in each point at the surface of an irrigated field leads to formation of a vector field of intensity of irrigation water. In an ideal situation, such velocity field on a soil surface should represent uniform set of vertically directed collinear vectors. Thus values of these vectors should be equal to infiltration intensities of water inflows on a soil surface. In soil profile the field of formed intensities of a water flow should lead to formation in it of a water storage accessible to root system of irrigated crops. In practice this ideal scheme undergoes a lot of changes. These changes have the different nature, the reasons of occurrence and degree of influence on the processes connected with formation of water flow and water storage. The major changes are formed as a result of imposing of the intensity fields on a soil surface and its field capillary infiltration rate. Excess of the first intensity over the second in each point of soil surface leads to formation of a layer of intensity of water not infiltrated in soil. Thus generate the new field of vectors of intensity which can consist of vertically directed vector of speed of evaporation, a quasi horizontal vector of intensity of a surface water flow and quasi vertical vector of intensity of a preferential flow directed downwards. Principal cause of excess of irrigation water application intensity over capillary infiltration rate can be on the one hand spatial non-uniformity of irrigation water application, and with other spatial variability of capillary infiltration rate, connected with spatial variability of water storage in the top layers of soil. As a result the spatial redistribution of irrigation water over irrigated filed forms distortions of ideal model of irrigation water storage in root zone of soil profile. The major differences consist in increasing of water storage in the depressions of a relief of an irrigated field and accordingly in their reduction on elevated zones of a relief, as well as losses of irrigation water outside of boundaries of a root zone of an irrigated field, in vertical, and horizontal directions. One of key parameters characterizing interaction between irrigation technology and soil state an irrigated field are intensity of water application, intensity and volume of a capillary infiltration, the water storage in root zone at the moment of infiltration starting and a topography of an irrigated field. Fnalyzing of spatial links between these characteristics a special research had been carried out on irrigated by sprinkler machine called Fregate at alfalfa field during the summer of 2012. This research carried out at experimental farm of the research institute VolgNIIGiM situated at a left bank of Volga River of Saratov Region of Russia (N51.384650°, E46.055890°). The digital elevation model of soil surface has been created, as well as monitoring of spatial water storage with EM 38 device and of a biomass were carried out. Layers of corresponding spatial data have been created and analyzed. The carried out analysis of spatial regresses has shown presence of links between productivity of a biomass of a alfalfa, water storage and topography. The obtained results shows the significance to include spatial characteristics of the topography and water storage to the irrigation models, as well as adaptation of sprinkler technology to allow differentiate the volume and rate of the applied water within the field. Special attention should be done to quantify relationships between uniform technology of water application by sprinkler and spatial nonuniformity of moisture storage (zoning of high soil moisture in depressions) in soil and as consequence of infiltration capacity.

Biogeochemical Processes That Produce Dissolved Organic Matter From Wheat Straw

USGS Publications Warehouse

Wershaw, Robert L.; Rutherford, David W.; Leenheer, Jerry A.; Kennedy, Kay R.; Cox, Larry G.; Koci, Donald R.

2003-01-01

The chemical reactions that lead to the formation of dissolved organic matter (DOM) in natural waters are poorly understood. Studies on the formation of DOM generally are complicated because almost all DOM isolates have been derived from mixtures of plant species composed of a wide variety of different types of precursor compounds for DOM formation. This report describes a study of DOM derived mainly from bales of wheat straw that had been left in a field for several years. During this period of time, black water from the decomposing wheat straw accumulated in pools in the field. The nuclear magnetic resonance and infrared spectra of the black water DOM indicate that it is composed almost entirely of lignin and carbohydrate polymeric units. Analysis by high-performance size-exclusion chromatography with multi-angle laser-light scattering detection indicates that the number average molecular weight of the DOM is 124,000 daltons. The results presented in this report indicate that the black water DOM is composed of hemicellulose chains cross-linked to lignin oligomers. These types of structures have been shown to exist in the hemicellulose matrix of plant cell walls. The cross-linked lignin-hemicellulose complexes apparently were released from partially degraded wheat-straw cell walls with little alteration. In solution in the black water, these lignin-hemicellulose polymers fold into compact globular particles in which the nonpolar parts of the polymer form the interiors of the particles and the polar groups are on the exterior surfaces of the particles. The tightly folded, compact conformation of these particles probably renders them relatively resistant to microbial degradation. This should be especially the case for the aromatic lignin structures that will be buried in the interiors of the particles.

Atomistic to continuum modeling of solidification microstructures

DOE PAGES

Karma, Alain; Tourret, Damien

2015-09-26

We summarize recent advances in modeling of solidification microstructures using computational methods that bridge atomistic to continuum scales. We first discuss progress in atomistic modeling of equilibrium and non-equilibrium solid–liquid interface properties influencing microstructure formation, as well as interface coalescence phenomena influencing the late stages of solidification. The latter is relevant in the context of hot tearing reviewed in the article by M. Rappaz in this issue. We then discuss progress to model microstructures on a continuum scale using phase-field methods. We focus on selected examples in which modeling of 3D cellular and dendritic microstructures has been directly linked tomore » experimental observations. Finally, we discuss a recently introduced coarse-grained dendritic needle network approach to simulate the formation of well-developed dendritic microstructures. The approach reliably bridges the well-separated scales traditionally simulated by phase-field and grain structure models, hence opening new avenues for quantitative modeling of complex intra- and inter-grain dynamical interactions on a grain scale.« less

The pluralization of the international: Resistance and alter-standardization in regenerative stem cell medicine

PubMed Central

Rosemann, Achim; Chaisinthop, Nattaka

2016-01-01

The article explores the formation of an international politics of resistance and ‘alter-standardization’ in regenerative stem cell medicine. The absence of internationally harmonized regulatory frameworks in the clinical stem cell field and the presence of lucrative business opportunities have resulted in the formation of transnational networks adopting alternative research standards and practices. These oppose, as a universal global standard, strict evidence-based medicine clinical research protocols as defined by scientists and regulatory agencies in highly developed countries. The emergence of transnational spaces of alter-standardization is closely linked to scientific advances in rapidly developing countries such as China and India, but calls for more flexible regulatory frameworks, and the legitimization of experimental for-profit applications outside of evidence-based medical care, are emerging increasingly also within more stringently regulated countries, such as the United States and countries in the European Union. We can observe, then, a trend toward the pluralization of the standards, practices, and concepts in the stem cell field. PMID:26983174

Stellar Archaeology and Galaxy Genesis: The Need for Large Area Multi-Object Spectrograph on 8 m-Class Telescopes

NASA Astrophysics Data System (ADS)

Irwin, Mike J.; Lewis, Geraint F.

The origin and evolution of galaxies like the Milky Way and M31 remain among the key questions in astrophysics. The galaxies we see today in and around the Local Group are representatives of the general field population of the Universe and have been evolving for the majority of cosmic time. As our nearest neighbour systems they can be studied in far more detail than their distant counterparts and hence provide our best hope for understanding star formation and prototypical galaxy evolution over the lifetime of the Universe [K. Freeman, J. Bland-Hawthorn in Annu. Rev. Astron. Astrophys. 40, 487 (2002)]. Significant observational progress has been made, but we are still a long way from understanding galaxy genesis. To unravel this formative epoch, detailed large area multi-object spectroscopy of spatial, kinematic and chemical structures on 8 m-class telescopes are required, to provide the link between local near-field cosmology and predictions from the high-redshift Universe.

Genetic links among fluid cycling, vein formation, regional deformation, and plutonism in the Juneau gold belt, southeastern Alaska

USGS Publications Warehouse

Miller, Lance D.; Goldfarb, Richard J.; Gehrels, George E.; Snee, Lawrence W.

1994-01-01

Gold-bearing quartz vein systems in the Juneau gold belt formed within a 160-km- long by 5- to 8-km-wide zone along the western margin of the Coast Mountains, Alaska. Vein systems are spatially associated with shear zones adjacent to terrane-bounding, mid-Cretaceous thrust faults. Analysis of vein orientations and sense of shear data define a stress configuration with greatest and least principal axes oriented subhorizontally with northeast-southwest trends and subverticaly, respectively. This local stress configuration is compatible with the far-field plate configuration during Eocene time. Isotopic ages of vein formation indicate that fluid cycling occurred between 56.5 and ≥52.8 Ma, and are consistent with a genetic link between veining and a change in plate motion in early Eocene time. Veining was also synchronous with the latter stages of rapid exhumation and voluminous plutonism immediately inboard of the gold belt. We propose a model in which interacting tectonic events facilitated fault-valve action and vein development along now-exhumed shear zones.

New positive feedback mechanism between boundary layer meteorology and secondary aerosol formation during severe haze events.

PubMed

Liu, Quan; Jia, Xingcan; Quan, Jiannong; Li, Jiayun; Li, Xia; Wu, Yongxue; Chen, Dan; Wang, Zifa; Liu, Yangang

2018-04-17

Severe haze events during which particulate matter (PM) increases quickly from tens to hundreds of microgram per cubic meter in 1-2 days frequently occur in China. Although it has been known that PM is influenced by complex interplays among emissions, meteorology, and physical and chemical processes, specific mechanisms remain elusive. Here, a new positive feedback mechanism between planetary boundary layer (PBL), relative humidity (RH), and secondary PM (SPM) formation is proposed based on a comprehensive field experiment and model simulation. The decreased PBL associated with increased PM increases RH by weakening the vertical transport of water vapor; the increased RH in turn enhances the SPM formation through heterogeneous aqueous reactions, which further enhances PM, weakens solar radiation, and decreases PBL height. This positive feedback, together with the PM-Radiation-PBL feedback, constitutes a key mechanism that links PM, radiation, PBL properties (e.g. PBL height and RH), and SPM formation, This mechanism is self-amplifying, leading to faster PM production, accumulation, and more severe haze pollution.

Distributed Control for Networked Systems with Non-Traditional Communication Constraints: Lossy Links, Power and Usage Limitations, and Induced Cooperation

DTIC Science & Technology

2012-07-12

fields ranging from real- time alarm systems and vehicle systems to aeronautical guidance and formation control , the need for establishing a theoretical...noisy channels In the publication [7], we have considered the problem of remotely controlling a continuous- time lin- ear time -invariant system driven by...the controller ) and the reverse channel (connecting the controller to the plant). For stability of the closed-loop system , we look for the existence of

The BUFFALO HST Survey

NASA Astrophysics Data System (ADS)

Steinhardt, Charles; Jauzac, Mathilde; Capak, Peter; Koekemoer, Anton; Oesch, Pascal; Richard, Johan; Sharon, Keren q.; BUFFALO

2018-01-01

Beyond Ultra-deep Frontier Fields And Legacy Observations (BUFFALO) is an astronomical survey built around the six Hubble Space Telescope (HST) Frontier Fields clusters designed to learn about early galactic assembly and clustering and prepare targets for observations with the James Webb Space Telescope. BUFFALO will place significant new constraints on how and when the most massive and luminous galaxies in the universe formed and how early galaxy formation is linked to dark matter assembly. The same data will also probe the temperature and cross section of dark matter in the massive Frontier Fields galaxy clusters, and tell us how the dark matter, cluster gas, and dynamics of the clusters influence the galaxies in and around them. These studies are possible because the Spitzer Space Telescope, Chandra X-ray Observatory, XMM-Newton, and ground based telescopes have already invested heavily in deep observations around the Frontier Fields, so that the addition of HST observations can yield significant new results.

The Interplay of Star formation and Accretion in the Local Universe

NASA Astrophysics Data System (ADS)

Green, Paul

2010-09-01

Galaxy evolution and supermassive black hole growth are closely linked, but the inter-relationships between active accretion and star formation, AGN outflows, and host morphological trends remain poorly understood. We propose to study an unprecedented sample of 615 low redshift SDSS galaxies and AGN detected in archival Chandra fields. We will measure diverse optical and X-ray spectroscopic properties spanning the artificial galaxy/AGN divide, and provide detailed results of our model fitting. We highlight tests of (1) an evolutionary sequence from star-forming through AGN to passive galaxy modes (2) narrow line Sy1 galaxies and new parallels between the accretion modes of AGN and stellar mass X-ray binaries and (3) the relationship of host morphology and mergers to accretion.

Scalability enhancement of AODV using local link repairing

NASA Astrophysics Data System (ADS)

Jain, Jyoti; Gupta, Roopam; Bandhopadhyay, T. K.

2014-09-01

Dynamic change in the topology of an ad hoc network makes it difficult to design an efficient routing protocol. Scalability of an ad hoc network is also one of the important criteria of research in this field. Most of the research works in ad hoc network focus on routing and medium access protocols and produce simulation results for limited-size networks. Ad hoc on-demand distance vector (AODV) is one of the best reactive routing protocols. In this article, modified routing protocols based on local link repairing of AODV are proposed. Method of finding alternate routes for next-to-next node is proposed in case of link failure. These protocols are beacon-less, means periodic hello message is removed from the basic AODV to improve scalability. Few control packet formats have been changed to accommodate suggested modification. Proposed protocols are simulated to investigate scalability performance and compared with basic AODV protocol. This also proves that local link repairing of proposed protocol improves scalability of the network. From simulation results, it is clear that scalability performance of routing protocol is improved because of link repairing method. We have tested protocols for different terrain area with approximate constant node densities and different traffic load.

Electronic health record meets digital library: a new environment for achieving an old goal.

PubMed

Humphreys, B L

2000-01-01

Linking the electronic health record to the digital library is a Web-era reformulation of the long-standing informatics goal of seamless integration of automated clinical data and relevant knowledge-based information to support informed decisions. The spread of the Internet, the development of the World Wide Web, and converging format standards for electronic health data and digital publications make effective linking increasingly feasible. Some existing systems link electronic health data and knowledge-based information in limited settings or limited ways. Yet many challenging informatics research problems remain to be solved before flexible and seamless linking becomes a reality and before systems become capable of delivering the specific piece of information needed at the time and place a decision must be made. Connecting the electronic health record to the digital library also requires positive resolution of important policy issues, including health data privacy, government encouragement of high-speed communications, electronic intellectual property rights, and standards for health data and for digital libraries. Both the research problems and the policy issues should be important priorities for the field of medical informatics.

Electronic Health Record Meets Digital Library

PubMed Central

Humphreys, Betsy L.

2000-01-01

Linking the electronic health record to the digital library is a Web-era reformulation of the long-standing informatics goal of seamless integration of automated clinical data and relevant knowledge-based information to support informed decisions. The spread of the Internet, the development of the World Wide Web, and converging format standards for electronic health data and digital publications make effective linking increasingly feasible. Some existing systems link electronic health data and knowledge-based information in limited settings or limited ways. Yet many challenging informatics research problems remain to be solved before flexible and seamless linking becomes a reality and before systems become capable of delivering the specific piece of information needed at the time and place a decision must be made. Connecting the electronic health record to the digital library also requires positive resolution of important policy issues, including health data privacy, government envouragement of high-speed communications, electronic intellectual property rights, and standards for health data and for digital libraries. Both the research problems and the policy issues should be important priorities for the field of medical informatics. PMID:10984463

Tension-induced binding of semiflexible biopolymers

NASA Astrophysics Data System (ADS)

Benetatos, Panayotis; von der Heydt, Alice; Zippelius, Annette

2015-03-01

We investigate theoretically the effect of polymer tension on the collective behaviour of reversible cross-links. We use a model of two parallel-aligned, weakly-bending wormlike chains with a regularly spaced sequence of binding sites subjected to a tensile force. Reversible cross-links attach and detach at the binding sites with an affinity controlled by a chemical potential. In a mean-field approach, we calculate the free energy of the system and we show the emergence of a free energy barrier which controls the reversible (un)binding. The tension affects the conformational entropy of the chains which competes with the binding energy of the cross-links. This competition gives rise to a sudden increase in the fraction of bound sites as the polymer tension increases. The force-induced first-order transition in the number of cross-links implies a sudden force-induced stiffening of the effective stretching modulus of the polymers. This mechanism may be relevant to the formation and stress-induced strengthening of stress fibers in the cytoskeleton. We acknowledge support by the Deutsche Forschungsgemeinschaft (DFG) via grant SFB-937/A1.

The Impact of Test Dimensionality, Common-Item Set Format, and Scale Linking Methods on Mixed-Format Test Equating

ERIC Educational Resources Information Center

Öztürk-Gübes, Nese; Kelecioglu, Hülya

2016-01-01

The purpose of this study was to examine the impact of dimensionality, common-item set format, and different scale linking methods on preserving equity property with mixed-format test equating. Item response theory (IRT) true-score equating (TSE) and IRT observed-score equating (OSE) methods were used under common-item nonequivalent groups design.…

Design of an optical fiber cable link for lightning instrumentation. [wideband pulse recording system

NASA Technical Reports Server (NTRS)

Grove, C. H.; Phillips, R. L.; Wojtasinski, R. J.

1975-01-01

A lightning instrumentation system was designed to record current magnitudes of lightning strikes that hit a launch pad service structure at NASA's Kennedy Space Center. The instrumentation system consists of a lightning ground rod with a current sensor coil, an optical transmitter, an optical fiber cable link, a detector receiver, and a recording system. The transmitter is a wideband pulse transformer driving an IR LED emitter. The transmitter operates linearly as a transducer. A low loss fiber bundle provides isolation of the recorder system from the electromagnetic field of the lightning strike. The output of an optical detector receiver module is sampled and recorded in digital format. The significant factors considered in the design were dynamic range, linearity, mechanical configuration, electromagnetic isolation, and temperature compensation.

Electric Field Effects on the Intermolecular Interactions in Water Whiskers: Insight from Structures, Energetics, and Properties

DOE PAGES

Bai, Yang; He, Hui-Min; Li, Ying; ...

2015-02-19

Modulation of intermolecular interactions in response to external electric fields could be fundamental to the formation of unusual forms of water, such as water whiskers. However, a detailed understanding of the nature of intermolecular interactions in such systems is lacking. In this study, we present novel theoretical results based on electron correlation calculations regarding the nature of H-bonds in water whiskers, which is revealed by studying their evolution under external electric fields with various field strengths. We find that the water whiskers consisting of 2-7 water molecules all have a chain-length dependent critical electric field. Under the critical electric field,more » the most compact chain structures are obtained, featuring very strong H-bonds, herein referred to as covalent H-bonds. In the case of a water dimer whisker, the bond length of the novel covalent H-bond shortens by 25%, the covalent bond order increases by 9 times, and accordingly the H-bond energy is strengthened by 5 times compared to the normal H-bond in a (H 2O) 2 cluster. Below the critical electric field, it is observed that with increasing field strength, H-bonding orbitals display gradual evolutions in the orbital energy, orbital ordering, and orbital nature (i.e., from typical -style orbital to unusual -style double H-bonding orbital). We also show that beyond the critical electric field, a single water whisker may disintegrate to form a loosely bound zwitterionic chain due to a relay-style proton transfer, whereas two water whiskers may undergo intermolecular cross-linking to form a quasi-two-dimensional water network. In conclusion, these results help shed new insight on the effects of electric fields on water whisker formation.« less

Sharing and reusing cardiovascular anatomical models over the Web: a step towards the implementation of the virtual physiological human project.

PubMed

Gianni, Daniele; McKeever, Steve; Yu, Tommy; Britten, Randall; Delingette, Hervé; Frangi, Alejandro; Hunter, Peter; Smith, Nicolas

2010-06-28

Sharing and reusing anatomical models over the Web offers a significant opportunity to progress the investigation of cardiovascular diseases. However, the current sharing methodology suffers from the limitations of static model delivery (i.e. embedding static links to the models within Web pages) and of a disaggregated view of the model metadata produced by publications and cardiac simulations in isolation. In the context of euHeart--a research project targeting the description and representation of cardiovascular models for disease diagnosis and treatment purposes--we aim to overcome the above limitations with the introduction of euHeartDB, a Web-enabled database for anatomical models of the heart. The database implements a dynamic sharing methodology by managing data access and by tracing all applications. In addition to this, euHeartDB establishes a knowledge link with the physiome model repository by linking geometries to CellML models embedded in the simulation of cardiac behaviour. Furthermore, euHeartDB uses the exFormat--a preliminary version of the interoperable FieldML data format--to effectively promote reuse of anatomical models, and currently incorporates Continuum Mechanics, Image Analysis, Signal Processing and System Identification Graphical User Interface (CMGUI), a rendering engine, to provide three-dimensional graphical views of the models populating the database. Currently, euHeartDB stores 11 cardiac geometries developed within the euHeart project consortium.

Cross-linked polyimides for integrated optics

NASA Astrophysics Data System (ADS)

Singer, Kenneth D.; Kowalczyk, Tony C.; Nguyen, Hung D.; Beuhler, Allyson J.; Wargowski, David A.

1997-01-01

We have investigated a promising class of polyimide materials for both passive and active electro-optic devices, namely crosslinkable polyimides. These fluorinated polyimides are soluble in the imidized form and are both thermally and photo-crosslinkable leading to easy processability into waveguide structures and the possibility of stable electro-optic properties. We have fabricated channel and slab waveguides and investigated the mechanism of optical propagation loss using photothermal deflection spectroscopy and waveguide loss spectroscopy, and found the losses to arise from residual absorption due to the formation of charge transfer states. The absorption is inhibited by fluorination leading to propagation losses as low as 0.3 dB/cm in the near infrared. Because of the ability to photocrosslink, channel waveguides are fabricated using a simple wet-etch process. Channel waveguides so formed are observed to have no excess loss over slab structures. Solubility followed by thermal cross-linking allows the formation of multilayer structures. We have produced electro-optic polymers by doping with the nonlinear optical chromophores, DCM and DADC; and a process of concurrent poling and thermal crosslinking. Multilayer structures have been investigated and poling fields optimized in the active layer by doping the cladding with an anti-static agent. The high glass-transition temperature and cross-linking leads to very stable electro-optic properties. We are currently building electro-optic modulators based on these materials. Progress and results in this area also are reported.

Pain, motor and gait assessment of murine osteoarthritis in a cruciate ligament transection model

PubMed Central

Ruan, Merry ZC; Patel, Ronak M; Dawson, Brian C; Jiang, Ming-ming; Lee, Brendan HI

2013-01-01

Objective The major complaint of Osteoarthritis (OA) patients is pain. However, due to the nature of clinical studies and the limitation of animal studies, few studies have linked function impairment and behavioral changes in OA animal models to cartilage loss and histopathology. Our objective was to study surrogate markers of functional impairment in relation to cartilage loss and pathological changes in a post-traumatic mouse model of OA. Method We performed a battery of functional analyses in a mouse model of OA generated by cruciate ligament transection (CLT). The changes in functional analyses were linked to histological changes graded by OARSI standards, histological grading of synovitis, and volumetric changes of the articular cartilage and osteophytes quantified by phase contrast micro-CT. Results OA generated by CLT led to decreased time on rotarod, delayed response on hotplate analysis, and altered gait starting from 4 weeks after surgery. Activity in open field analysis did not change at 4, 8, or 12 weeks after CLT. The magnitude of behavioral changes was directly correlated with higher OARSI histological scores of OA, synovitis in the knee joints, cartilage volume loss, and osteophyte formation. Conclusion Our findings link functional analyses to histological grading, synovitis, comprehensive 3-dimensional assessment of cartilage volume and osteophyte formation. This serves as a reference for a mouse model in predicting outcomes of OA treatment. PMID:23973150

Photoinduced DNA Interstrand Cross-Link Formation by Naphthalene Boronates via a Carbocation.

PubMed

Wang, Yibin; Lin, Zechao; Fan, Heli; Peng, Xiaohua

2016-07-18

Most photoinduced DNA cross-link formation by a bifunctional aryl derivative is through a bisquinone methide. DNA cross-linking via a bisarylcarbocation remains a less explored area. We designed and synthesized a series of naphthalene boronates that produce DNA interstrand cross-links via a carbocation upon UV irradiation. A free radical was generated from the naphthalene boronates with 350 nm irradiation and further converted to a carbocation by electron transfer. The activation mechanism was determined using the orthogonal traps, 2,2,6,6-tetramethylpiperidin-1-oxyl (TEMPO) and methoxyamine that react with either the free radical or the carbocation but not both. This represents a novel example of photoinduced DNA cross-link formation via carbocations generated from a bisaryl derivative. This work provides information useful for the design of novel photoactivated DNA cross-linking agents. © 2016 WILEY-VCH Verlag GmbH & Co. KGaA, Weinheim.

The Formation Mechanism of Hydrogels.

PubMed

Lu, Liyan; Yuan, Shiliang; Wang, Jing; Shen, Yun; Deng, Shuwen; Xie, Luyang; Yang, Qixiang

2017-06-12

Hydrogels are degradable polymeric networks, in which cross-links play a vital role in structure formation and degradation. Cross-linking is a stabilization process in polymer chemistry that leads to the multi-dimensional extension of polymeric chains, resulting in network structures. By cross-linking, hydrogels are formed into stable structures that differ from their raw materials. Generally, hydrogels can be prepared from either synthetic or natural polymers. Based on the types of cross-link junctions, hydrogels can be categorized into two groups: the chemically cross-linked and the physically cross-linked. Chemically cross-linked gels have permanent junctions, in which covalent bonds are present between different polymer chains, thus leading to excellent mechanical strength. Although chemical cross-linking is a highly resourceful method for the formation of hydrogels, the cross-linkers used in hydrogel preparation should be extracted from the hydrogels before use, due to their reported toxicity, while, in physically cross-linked gels, dissolution is prevented by physical interactions, such as ionic interactions, hydrogen bonds or hydrophobic interactions. Physically cross-linked methods for the preparation of hydrogels are the alternate solution for cross-linker toxicity. Both methods will be discussed in this essay. Copyright© Bentham Science Publishers; For any queries, please email at epub@benthamscience.org.

TESAT laser communication terminal performance results on 5.6Gbit coherent inter satellite and satellite to ground links

NASA Astrophysics Data System (ADS)

Gregory, M.; Heine, F.; Kämpfner, H.; Meyer, R.; Fields, R.; Lunde, C.

2017-11-01

The increasing demand on high speed communication networks has stimulated the development of optical free space data transmission during the last years. TESAT has developed a laser communication terminal (LCT) that fulfills the need of a power efficient system whose capability has been successfully demonstrated at bidirectional space-to-space links and bidirectional space-to-ground links (SGLs) at a data rate of 5.625 GBit/s with a homodyne detection scheme and a BPSK modulation format. In comparison to a direct detection system, the homodyne detection scheme works as a bandpass filter. The transmission is immune to false light and even data transmission with the sun in the receiver field of view (FOV) is possible. Compared to common RF transmission which is implemented on spacecrafts for data transmission, optical transmission provides not only higher transmission rates (factor 10) but also shows excellent security features since the laser beams directivity making it immune to interception.

A group evolving-based framework with perturbations for link prediction

NASA Astrophysics Data System (ADS)

Si, Cuiqi; Jiao, Licheng; Wu, Jianshe; Zhao, Jin

2017-06-01

Link prediction is a ubiquitous application in many fields which uses partially observed information to predict absence or presence of links between node pairs. The group evolving study provides reasonable explanations on the behaviors of nodes, relations between nodes and community formation in a network. Possible events in group evolution include continuing, growing, splitting, forming and so on. The changes discovered in networks are to some extent the result of these events. In this work, we present a group evolving-based characterization of node's behavioral patterns, and via which we can estimate the probability they tend to interact. In general, the primary aim of this paper is to offer a minimal toy model to detect missing links based on evolution of groups and give a simpler explanation on the rationality of the model. We first introduce perturbations into networks to obtain stable cluster structures, and the stable clusters determine the stability of each node. Then fluctuations, another node behavior, are assumed by the participation of each node to its own belonging group. Finally, we demonstrate that such characteristics allow us to predict link existence and propose a model for link prediction which outperforms many classical methods with a decreasing computational time in large scales. Encouraging experimental results obtained on real networks show that our approach can effectively predict missing links in network, and even when nearly 40% of the edges are missing, it also retains stationary performance.

[The long journey of Milton Santos's exile and the formation of his network of cooperation].

PubMed

Pedrosa, Breno Viotto

2018-01-01

Based on an analysis of letters from the Milton Santos collection, the article revisits his journey through exile and shows how he contributed to solidifying the field of critical geography. It also pinpoints elements that reveal the genesis of his intellectual network, which involved thinkers from France, the United States, and Latin America. Focusing on the contexts of his exile, the article links his experiences outside Brazil to new scientific interests and the formation of an international circle of cooperation. Secondarily, it provides evidence of his concern with planning. It is found that his interest in the group of Pierre George and François Perroux was followed by a critical stance that moved him toward dialogue with Marxist philosophy and structuralism.

GEOPAC

USGS Publications Warehouse

Godson, Richard H.

1974-01-01

GEOPAC .consists of a series of subroutines to primarily process potential-field geophysical data but other types of data can also be used with the program. The package contains routines to reduce, store, process and display information in two-dimensional or three-dimensional form. Input and output formats are standardized and temporary disk storage permits data sets to be processed by several subroutines in one job step. The subroutines are link-edited in an overlay mode to form one program and they can be executed by submitting a card containing the subroutine name in the input stream.

Rheological properties and formation mechanism of DC electric fields induced konjac glucomannan-tungsten gels.

PubMed

Wang, Lixia; Jiang, Yaoping; Lin, Youhui; Pang, Jie; Liu, Xiang Yang

2016-05-20

Konjac glucomannan-tungsten (KGM-T) hydrogel of electrochemical reversibility was successfully produced under DC electric fields in the presence of sodium tungstate. The structure and the effects of sodium tungstate concentration, KGM concentration, voltage and electric processing time on the rheological properties of the gels were investigated. pH experiments showed that KGM sol containing Na2WO4·2H2O in the vicinity of the positive electrode became acidic and the negative electrode basic after the application of DC electric fields. Under acid conditions, WO4(2-) ions transformed into isopoly-tungstic acid ions. FTIR and Raman studies indicated that isopoly-tungstic acid ions absorbed on KGM molecular chain and cross-linked with -OH groups at C-6 position on sugar units of KGM. Frequency sweep data showed with increasing sodium tungstate concentration, voltage, and electric processing time, the viscoelastic moduli, i.e., the storage and the loss moduli of the gel increased, whereas an increase in KGM concentration led to a decrease in gel viscoelastic moduli. The temperature sweep measurements indicated the obtained gel exhibited high thermal stability. Finally, the mechanism of gel formation was proposed. Our work may pave the way to use DC electric fields for the design and development of KGM gels as well as polysaccharide gels. Copyright © 2016 Elsevier Ltd. All rights reserved.

New positive feedback mechanism between boundary layer meteorology and secondary aerosol formation during severe haze events

DOE Office of Scientific and Technical Information (OSTI.GOV)

Liu, Quan; Jia, Xingcan; Quan, Jiannong

Severe haze events during which particulate matter (PM) increases quickly from tens to hundreds of microgram per cubic meter in 1-2 days frequently occur in China. Although it has been known that PM is influenced by complex interplays among emissions, meteorology, and physical and chemical processes, specific mechanisms remain elusive. In this paper, a new positive feedback mechanism between planetary boundary layer (PBL), relative humidity (RH), and secondary PM (SPM) formation is proposed based on a comprehensive field experiment and model simulation. The decreased PBL associated with increased PM increases RH by weakening the vertical transport of water vapor; themore » increased RH in turn enhances the SPM formation through heterogeneous aqueous reactions, which further enhances PM, weakens solar radiation, and decreases PBL height. This positive feedback, together with the PM-Radiation-PBL feedback, constitutes a key mechanism that links PM, radiation, PBL properties (e.g. PBL height and RH), and SPM formation, This mechanism is self-amplifying, leading to faster PM production, accumulation, and more severe haze pollution.« less

Long range transport of colloids in aqueous solutions

NASA Astrophysics Data System (ADS)

Florea, Daniel; Musa, Sami; Huyghe, Jacques M. R. J.; Wyss, Hans M.

2013-03-01

Colloids in aqueous suspensions can experience strong, extremely long range repulsive forces near interfaces such as biological tissues, gels, ion exchange resins or metals. As a result exclusion zones extending over several millimeters can be formed. While this phenomenon has been previously described, a physical understanding of this process is still lacking. This exclusion zone formation is puzzling because the typical forces acting on colloidal particles are limited to much shorter distances and external fields that could drive the particles are absent. Here we study the exclusion zone formation in detail by following the time and distance-dependent forces acting on the particles. We present a simple model that accounts for our experimental data and directly links the exclusion zone formation to an already known physical transport phenomenon. We show that the effect can be tuned by changing the zeta potential of the particles or by varying the species present in the aqueous solution. We thus provide a direct physical explanation for the intriguing exclusion zone formation and we illustrate how this effect can be exploited in a range of industrial applications.

New positive feedback mechanism between boundary layer meteorology and secondary aerosol formation during severe haze events

DOE PAGES

Liu, Quan; Jia, Xingcan; Quan, Jiannong; ...

2018-04-17

Severe haze events during which particulate matter (PM) increases quickly from tens to hundreds of microgram per cubic meter in 1-2 days frequently occur in China. Although it has been known that PM is influenced by complex interplays among emissions, meteorology, and physical and chemical processes, specific mechanisms remain elusive. In this paper, a new positive feedback mechanism between planetary boundary layer (PBL), relative humidity (RH), and secondary PM (SPM) formation is proposed based on a comprehensive field experiment and model simulation. The decreased PBL associated with increased PM increases RH by weakening the vertical transport of water vapor; themore » increased RH in turn enhances the SPM formation through heterogeneous aqueous reactions, which further enhances PM, weakens solar radiation, and decreases PBL height. This positive feedback, together with the PM-Radiation-PBL feedback, constitutes a key mechanism that links PM, radiation, PBL properties (e.g. PBL height and RH), and SPM formation, This mechanism is self-amplifying, leading to faster PM production, accumulation, and more severe haze pollution.« less

Influence of Immobilized Biomolecules on Magnetic Bead Plug Formation and Retention in Capillary Electrophoresis

PubMed Central

Henken, Rachel L.; Chantiwas, Rattikan; Gilman, S. Douglass

2012-01-01

Significant changes in the formation and retention of magnetic bead plugs in a capillary during electrophoresis were studied, and it was demonstrated that these effects were due to the type of biological molecule immobilized on the surface of these beads. Three biological molecules, an antibody, an oligonucleotide and alkaline phosphatase, were attached to otherwise identical streptavidin-coated magnetic beads through biotin-avidin binding in order to isolate differences in bead immobilization in a magnetic field resulting from the type of biological molecule immobilized on the bead surface. Alkaline phosphatase also was attached to the magnetic beads using epoxy groups on the bead surfaces (instead of avidin-biotin binding) to study the impact of immobilization chemistry. The formation and retention of magnetic bead plugs were studied quantitatively using light scattering detection of magnetic particles eluting from the bead plugs and qualitatively using microscopy. Both the type of biomolecule immobilized on the magnetic bead surface and the chemistry used to link the biomolecule to the magnetic bead impacted the formation and retention of the bead plugs. PMID:22437880

Laser desorption vs. electrospray of polyyne-threaded rotaxanes: Preventing covalent cross-linking and promoting noncovalent aggregation

NASA Astrophysics Data System (ADS)

Neugebauer, Thomas S.; Franz, Michael; Frankenberger, Stephanie; Tykwinski, Rik R.; Drewello, Thomas

2018-02-01

Laser-induced cross-linking of polyynes is successfully hindered when the polyyne is encapsulated as part of a rotaxane and therefore protected by a surrounding macrocycle. When the rotaxane is electrosprayed, however, noncovalent aggregate ions are efficiently formed. Aggregates of considerable size (including more than 50 rotaxane molecules with masses beyond 100k Da) and charge states (up to 13 charges and beyond) have been observed. Either protons or sodium cations act as the charge carriers. These aggregates are not formed when the individual components of the rotaxane, i.e., the macrocycle or the polyyne, are separately electrosprayed. This underlines the structural importance of the rotaxane for the aggregate formation. Straightforward force field calculations indicate that the polyyne thread hinders the folding of the macrocycles, which facilitates the bonding interaction between the two components.

Locally-enhanced light scattering by a monocrystalline silicon wafer

NASA Astrophysics Data System (ADS)

Ma, Li; Zhang, Pan; Li, Zhen-Hua; Liu, Chun-Xiang; Li, Xing; Zhan, Zi-Jun; Ren, Xiao-Rong; He, Chang-Wei; Chen, Chao; Cheng, Chuan-Fu

2018-03-01

We study the optical properties of light scattering by a monocrystalline silicon wafer, by using transparent material to replicate its surface structure and illuminating a fabricated sample with a laser source. The experimental results show that the scattering field contains four spots of concentrated intensity with high local energy, and these spots are distributed at the four vertices of a square with lines of intensity linking adjacent spots. After discussing simulations of and theory about the formation of this light scattering, we conclude that the scattering field is formed by the effects of both geometrical optics and physical optics. Moreover, we calculate the central angle of the spots in the light field, and the result indicates that the locally-enhanced intensity spots have a definite scattering angle. These results may possibly provide a method for improving energy efficiency within mono-Si based solar cells.

Hubble Team Unveils Most Colorful View of Universe Captured by Space Telescope

NASA Image and Video Library

2014-06-04

Astronomers using NASA's Hubble Space Telescope have assembled a comprehensive picture of the evolving universe – among the most colorful deep space images ever captured by the 24-year-old telescope. Researchers say the image, in new study called the Ultraviolet Coverage of the Hubble Ultra Deep Field, provides the missing link in star formation. The Hubble Ultra Deep Field 2014 image is a composite of separate exposures taken in 2003 to 2012 with Hubble's Advanced Camera for Surveys and Wide Field Camera 3. Credit: NASA/ESA Read more: 1.usa.gov/1neD0se NASA image use policy. NASA Goddard Space Flight Center enables NASA’s mission through four scientific endeavors: Earth Science, Heliophysics, Solar System Exploration, and Astrophysics. Goddard plays a leading role in NASA’s accomplishments by contributing compelling scientific knowledge to advance the Agency’s mission. Follow us on Twitter Like us on Facebook Find us on Instagram

mz5: space- and time-efficient storage of mass spectrometry data sets.

PubMed

Wilhelm, Mathias; Kirchner, Marc; Steen, Judith A J; Steen, Hanno

2012-01-01

Across a host of MS-driven-omics fields, researchers witness the acquisition of ever increasing amounts of high throughput MS data and face the need for their compact yet efficiently accessible storage. Addressing the need for an open data exchange format, the Proteomics Standards Initiative and the Seattle Proteome Center at the Institute for Systems Biology independently developed the mzData and mzXML formats, respectively. In a subsequent joint effort, they defined an ontology and associated controlled vocabulary that specifies the contents of MS data files, implemented as the newer mzML format. All three formats are based on XML and are thus not particularly efficient in either storage space requirements or read/write speed. This contribution introduces mz5, a complete reimplementation of the mzML ontology that is based on the efficient, industrial strength storage backend HDF5. Compared with the current mzML standard, this strategy yields an average file size reduction to ∼54% and increases linear read and write speeds ∼3-4-fold. The format is implemented as part of the ProteoWizard project and is available under a permissive Apache license. Additional information and download links are available from http://software.steenlab.org/mz5.

Field experimental observations of highly graded sediment plumes.

PubMed

Jensen, Jacob Hjelmager; Saremi, Sina; Jimenez, Carlos; Hadjioannou, Louis

2015-06-15

A field experiment in the waters off the south-eastern coast of Cyprus was carried out to study near-field formation of sediment plumes from dumping. Different loads of sediment were poured into calm and limpid waters one at the time from just above the sea surface. The associated plumes, gravitating towards the seafloor, were filmed simultaneously by four divers situated at different depths in the water column, and facing the plume at different angles. The processes were captured using GoPro-Hero-series cameras. The high-quality underwater footage from near-surface, mid-depth and near-bed positions gives unique insight into the dynamics of the descending plume and near-field dispersion processes, and enables good understanding of flow and sediment transport processes involved from-release-to-deposition of the load in a non-scaled environment. The high resolution images and footages are available through the link provided herein. Observations support the development of a detailed multi-fractional sediment plume model. Copyright © 2015 Elsevier Ltd. All rights reserved.

Flexible helical-axis stellarator

DOEpatents

Harris, Jeffrey H.; Hender, Timothy C.; Carreras, Benjamin A.; Cantrell, Jack L.; Morris, Robert N.

1988-01-01

An 1=1 helical winding which spirals about a conventional planar, circular central conductor of a helical-axis stellarator adds a significant degree of flexibility by making it possible to control the rotational transform profile and shear of the magnetic fields confining the plasma in a helical-axis stellarator. The toroidal central conductor links a plurality of toroidal field coils which are separately disposed to follow a helical path around the central conductor in phase with the helical path of the 1=1 winding. This coil configuration produces bean-shaped magnetic flux surfaces which rotate around the central circular conductor in the same manner as the toroidal field generating coils. The additional 1=1 winding provides flexible control of the magnetic field generated by the central conductor to prevent the formation of low-order resonances in the rotational transform profile which can produce break-up of the equilibrium magnetic surfaces. Further, this additional winding can deepen the magnetic well which together with the flexible control provides increased stability.

DOE Office of Scientific and Technical Information (OSTI.GOV)

Aykutalp, Aycin; Wise, John H.; Spaans, Marco

In the last decade, the growth of supermassive black holes (SMBHs) has been intricately linked to galaxy formation and evolution and is a key ingredient in the assembly of galaxies. To investigate the origin of SMBHs, we perform cosmological simulations that target the direct collapse black hole seed formation scenario in the presence of two different strong Lyman-Werner (LW) background fields. These simulations include the X-ray irradiation from a central massive black hole (MBH), H{sub 2} self-shielding, and stellar feedback from metal-free and metal-enriched stars. We find in both simulations that local X-ray feedback induces metal-free star formation ∼0.5 Myrmore » after the MBH forms. The MBH accretion rate reaches a maximum of 10{sup –3} M {sub ☉} yr{sup –1} in both simulations. However, the duty cycle differs and is derived to be 6% and 50% for the high and low LW cases, respectively. The MBH in the high LW case grows only ∼6% in 100 Myr compared to 16% in the low LW case. We find that the maximum accretion rate is determined by the local gas thermodynamics, whereas the duty cycle is determined by the large-scale gas dynamics and gas reservoir. We conclude that radiative feedback from the central MBH plays an important role in star formation in the nuclear regions and stifling initial MBH growth relative to the typical Eddington rate argument, and that initial MBH growth might be affected by the local LW radiation field.« less

Insight on the formation of chitosan nanoparticles through ionotropic gelation with tripolyphosphate.

PubMed

Koukaras, Emmanuel N; Papadimitriou, Sofia A; Bikiaris, Dimitrios N; Froudakis, George E

2012-10-01

This work reports details pertaining to the formation of chitosan nanoparticles that we prepare by the ionic gelation method. The molecular interactions of the ionic cross-linking of chitosan with tripolyphosphate have been investigated and elucidated by means of all-electron density functional theory. Solvent effects have been taken into account using implicit models. We have identified primary-interaction ionic cross-linking configurations that we define as H-link, T-link, and M-link, and we have quantified the corresponding interaction energies. H-links, which display high interaction energies and are also spatially broadly accessible, are the most probable cross-linking configurations. At close range, proton transfer has been identified, with maximum interaction energies ranging from 12.3 up to 68.3 kcal/mol depending on the protonation of the tripolyphosphate polyanion and the relative coordination of chitosan with tripolyphosphate. On the basis of our results for the linking types (interaction energies and torsion bias), we propose a simple mechanism for their impact on the chitosan/TPP nanoparticle formation process. We introduce the β ratio, which is derived from the commonly used α ratio but is more fundamental since it additionally takes into account structural details of the oligomers.

The CCSDS Next Generation Space Data Link Protocol (NGSLP)

NASA Technical Reports Server (NTRS)

Kazz, Greg J.; Greenberg, Edward

2014-01-01

The CCSDS space link protocols i.e., Telemetry (TM), Telecommand (TC), Advanced Orbiting Systems (AOS) were developed in the early growth period of the space program. They were designed to meet the needs of the early missions, be compatible with the available technology and focused on the specific link environments. Digital technology was in its infancy and spacecraft power and mass issues enforced severe constraints on flight implementations. Therefore the Telecommand protocol was designed around a simple Bose, Hocquenghem, Chaudhuri (BCH) code that provided little coding gain and limited error detection but was relatively simple to decode on board. The infusion of the concatenated Convolutional and Reed-Solomon codes5 for telemetry was a major milestone and transformed telemetry applications by providing them the ability to more efficiently utilize the telemetry link and its ability to deliver user data. The ability to significantly lower the error rates on the telemetry links enabled the use of packet telemetry and data compression. The infusion of the high performance codes for telemetry was enabled by the advent of digital processing, but it was limited to earth based systems supporting telemetry. The latest CCSDS space link protocol, Proximity-1 was developed in early 2000 to meet the needs of short-range, bi-directional, fixed or mobile radio links characterized by short time delays, moderate but not weak signals, and short independent sessions. Proximity-1 has been successfully deployed on both NASA and ESA missions at Mars and is planned to be utilized by all Mars missions in development. A new age has arisen, one that now provides the means to perform advanced digital processing in spacecraft systems enabling the use of improved transponders, digital correlators, and high performance forward error correcting codes for all communications links. Flight transponders utilizing digital technology have emerged and can efficiently provide the means to make the next leap in performance for space link communications. Field Programmable Gate Arrays (FPGAs) provide the capability to incorporate high performance forward error correcting codes implemented within software transponders providing improved performance in data transfer, ranging, link security, and time correlation. Given these synergistic technological breakthroughs, the time has come to take advantage of them in applying them to both on going (e.g., command, telemetry) and emerging (e.g., space link security, optical communication) space link applications. However one of the constraining factors within the Data Link Layer in realizing these performance gains is the lack of a generic transfer frame format and common supporting services amongst the existing CCSDS link layer protocols. Currently each of the four CCSDS link layer protocols (TM, TC, AOS, and Proximity-1) have unique formats and services which prohibits their reuse across the totality of all space link applications of CCSDS member space agencies. For example, Mars missions. These missions implement their proximity data link layer using the Proximity-1 frame format and the services it supports but is still required to support the direct from Earth (TC) protocols and the Direct To Earth (AOS/TM) protocols. The prime purpose of this paper, is to describe a new general purpose CCSDS Data Link layer protocol, the NGSLP that will provide the required services along with a common transfer frame format for all the CCSDS space links (ground to/from space and space to space links) targeted for emerging missions after a CCSDS agency-wide coordinated date. This paper will also describe related options that can be included for the Coding and Synchronization sub-layer of the Data Link layer to extend the capacities of the link and additionally provide an independence of the transfer frame sub-layer from the coding sublayer. This feature will provide missions the option of running either the currently performed synchronous coding and transfer frame data link or an asynchronous coding/frame data link, in which the transfer frame length is independent of the block size of the code. The benefits from the elimination of this constraint (frame synchronized to the code block) will simplify the interface between the transponder and the data handling equipment and reduce implementation costs and complexities. The benefits include: inclusion of encoders/decoders into transmitters and receivers without regard to data link protocols, providing the ability to insert latency sensitive messages into the link to support launch, landing/docking, telerobotics. and Variable Coded Modulation (VCM). In addition the ability to transfer different sized frames can provide a backup for delivering stored anomaly engineering data simultaneously with real time data, or relaying of frames from various sources onto a trunk line for delivery to Earth.

Morphology effect on the light scattering and dynamic response of polymer network liquid crystal phase modulator.

PubMed

Xiangjie, Zhao; Cangli, Liu; Jiazhu, Duan; Jiancheng, Zeng; Dayong, Zhang; Yongquan, Luo

2014-06-16

Polymer network liquid crystal (PNLC) was one of the most potential liquid crystal for submillisecond response phase modulation, which was possible to be applied in submillisecond response phase only spatial light modulator. But until now the light scattering when liquid crystal director was reoriented by external electric field limited its phase modulation application. Dynamic response of phase change when high voltage was applied was also not elucidated. The mechanism that determines the light scattering was studied by analyzing the polymer network morphology by SEM method. Samples were prepared by varying the polymerization temperature, UV curing intensity and polymerization time. The morphology effect on the dynamic response of phase change was studied, in which high voltage was usually applied and electro-striction effect was often induced. The experimental results indicate that the polymer network morphology was mainly characterized by cross linked single fibrils, cross linked fibril bundles or even both. Although the formation of fibril bundle usually induced large light scattering, such a polymer network could endure higher voltage. In contrast, although the formation of cross linked single fibrils induced small light scattering, such a polymer network cannot endure higher voltage. There is a tradeoff between the light scattering and high voltage endurance. The electro-optical properties such as threshold voltage and response time were taken to verify our conclusion. For future application, the monomer molecular structure, the liquid crystal solvent and the polymerization conditions should be optimized to generate optimal polymer network morphology.

Pain, motor and gait assessment of murine osteoarthritis in a cruciate ligament transection model.

PubMed

Ruan, M Z C; Patel, R M; Dawson, B C; Jiang, M-M; Lee, B H L

2013-09-01

The major complaint of Osteoarthritis (OA) patients is pain. However, due to the nature of clinical studies and the limitation of animal studies, few studies have linked function impairment and behavioral changes in OA animal models to cartilage loss and histopathology. Our objective was to study surrogate markers of functional impairment in relation to cartilage loss and pathological changes in a post-traumatic mouse model of OA. We performed a battery of functional analyses in a mouse model of OA generated by cruciate ligament transection (CLT). The changes in functional analyses were linked to histological changes graded by OARSI standards, histological grading of synovitis, and volumetric changes of the articular cartilage and osteophytes quantified by phase contrast micro-computed tomography (μCT). OA generated by CLT led to decreased time on rotarod, delayed response on hotplate analysis, and altered gait starting from 4 weeks after surgery. Activity in open field analysis did not change at 4, 8, or 12 weeks after CLT. The magnitude of behavioral changes was directly correlated with higher OARSI histological scores of OA, synovitis in the knee joints, cartilage volume loss, and osteophyte formation. Our findings link functional analyses to histological grading, synovitis, comprehensive three-dimensional assessment of cartilage volume and osteophyte formation. This serves as a reference for a mouse model in predicting outcomes of OA treatment. Copyright © 2013 Osteoarthritis Research Society International. Published by Elsevier Ltd. All rights reserved.

Examining Two Strategies to Link Mixed-Format Tests Using Multiple-Choice Anchors. Research Report. ETS RR-10-18

ERIC Educational Resources Information Center

Walker, Michael E.; Kim, Sooyeon

2010-01-01

This study examined the use of an all multiple-choice (MC) anchor for linking mixed format tests containing both MC and constructed-response (CR) items, in a nonequivalent groups design. An MC-only anchor could effectively link two such test forms if either (a) the MC and CR portions of the test measured the same construct, so that the MC anchor…

Network formation: neighborhood structures, establishment costs, and distributed learning.

PubMed

Chasparis, Georgios C; Shamma, Jeff S

2013-12-01

We consider the problem of network formation in a distributed fashion. Network formation is modeled as a strategic-form game, where agents represent nodes that form and sever unidirectional links with other nodes and derive utilities from these links. Furthermore, agents can form links only with a limited set of neighbors. Agents trade off the benefit from links, which is determined by a distance-dependent reward function, and the cost of maintaining links. When each agent acts independently, trying to maximize its own utility function, we can characterize “stable” networks through the notion of Nash equilibrium. In fact, the introduced reward and cost functions lead to Nash equilibria (networks), which exhibit several desirable properties such as connectivity, bounded-hop diameter, and efficiency (i.e., minimum number of links). Since Nash networks may not necessarily be efficient, we also explore the possibility of “shaping” the set of Nash networks through the introduction of state-based utility functions. Such utility functions may represent dynamic phenomena such as establishment costs (either positive or negative). Finally, we show how Nash networks can be the outcome of a distributed learning process. In particular, we extend previous learning processes to so-called “state-based” weakly acyclic games, and we show that the proposed network formation games belong to this class of games.

Keck Geology Consortium Lava Project: Undergraduate Research Linking Natural and Experimental Basaltic Lava Flows

NASA Astrophysics Data System (ADS)

Karson, J. A.; Hazlett, R. W.; Wysocki, R.; Bromfield, M. E.; Browne, N. C.; Davis, N. C.; Pelland, C. G.; Rowan, W. L.; Warner, K. A.

2014-12-01

Undergraduate students in the Keck Geology Consortium Lava Project participated in a month-long investigation of features of basaltic lava flows from two very different perspectives. The first half of the project focused on field relations in basaltic lava flows from the 1984 Krafla Fires eruption in northern Iceland. Students gained valuable experience in the collection of observations and samples in the field leading to hypotheses for the formation of selected features related to lava flow dynamics. Studies focused on a wide range of features including: morphology and heat loss in lava tubes (pyroducts), growth and collapse of lava ponds and overflow deposits, textural changes of lava falls (flow over steep steps), spaced spatter cones from flows over wet ground, and anisotropy of magnetic susceptibility related to flow kinematics. In the second half of the program students designed, helped execute, documented, and analyzed features similar to those they studied in the field with large-scale (50-250 kg) basaltic lava flows created in the Syracuse University Lava Project (http://lavaproject.syr.edu). Data collected included video from multiple perspectives, infrared thermal (FLIR) images, still images, detailed measurements of flow dimensions and rates, and samples for textural and magnetic analyses. Experimental lava flow features provided critical tests of hypotheses generated in the field and a refined understanding of the behavior and final morphology of basaltic lava flows. The linked field and experimental studies formed the basis for year-long independent research projects under the supervision of their faculty mentors, leading to senior theses at the students' respective institutions.

Requirement analysis for an electronic laboratory notebook for sustainable data management in biomedical research.

PubMed

Menzel, Julia; Weil, Philipp; Bittihn, Philip; Hornung, Daniel; Mathieu, Nadine; Demiroglu, Sara Y

2013-01-01

Sustainable data management in biomedical research requires documentation of metadata for all experiments and results. Scientists usually document research data and metadata in laboratory paper notebooks. An electronic laboratory notebook (ELN) can keep metadata linked to research data resulting in a better understanding of the research results, meaning a scientific benefit [1]. Besides other challenges [2], the biggest hurdles for introducing an ELN seem to be usability, file formats, and data entry mechanisms [3] and that many ELNs are assigned to specific research fields such as biology, chemistry, or physics [4]. We aimed to identify requirements for the introduction of ELN software in a biomedical collaborative research center [5] consisting of different scientific fields and to find software fulfilling most of these requirements.

Robust criticality of an Ising model on rewired directed networks

NASA Astrophysics Data System (ADS)

Lipowski, Adam; Gontarek, Krzysztof; Lipowska, Dorota

2015-06-01

We show that preferential rewiring, which is supposed to mimic the behavior of financial agents, changes a directed-network Ising ferromagnet with a single critical point into a model with robust critical behavior. For the nonrewired random graph version, due to a constant number of out-links for each site, we write a simple mean-field-like equation describing the behavior of magnetization; we argue that it is exact and support the claim with extensive Monte Carlo simulations. For the rewired version, this equation is obeyed only at low temperatures. At higher temperatures, rewiring leads to strong heterogeneities, which apparently invalidates mean-field arguments and induces large fluctuations and divergent susceptibility. Such behavior is traced back to the formation of a relatively small core of agents that influence the entire system.

Connections between the Sznajd model with general confidence rules and graph theory

NASA Astrophysics Data System (ADS)

Timpanaro, André M.; Prado, Carmen P. C.

2012-10-01

The Sznajd model is a sociophysics model that is used to model opinion propagation and consensus formation in societies. Its main feature is that its rules favor bigger groups of agreeing people. In a previous work, we generalized the bounded confidence rule in order to model biases and prejudices in discrete opinion models. In that work, we applied this modification to the Sznajd model and presented some preliminary results. The present work extends what we did in that paper. We present results linking many of the properties of the mean-field fixed points, with only a few qualitative aspects of the confidence rule (the biases and prejudices modeled), finding an interesting connection with graph theory problems. More precisely, we link the existence of fixed points with the notion of strongly connected graphs and the stability of fixed points with the problem of finding the maximal independent sets of a graph. We state these results and present comparisons between the mean field and simulations in Barabási-Albert networks, followed by the main mathematical ideas and appendices with the rigorous proofs of our claims and some graph theory concepts, together with examples. We also show that there is no qualitative difference in the mean-field results if we require that a group of size q>2, instead of a pair, of agreeing agents be formed before they attempt to convince other sites (for the mean field, this would coincide with the q-voter model).

Rolling Deck to Repository (R2R): Products and Services for the U.S. Research Fleet Community

NASA Astrophysics Data System (ADS)

Arko, R. A.; Carbotte, S. M.; Chandler, C. L.; Smith, S. R.; Stocks, K. I.

2016-02-01

The Rolling Deck to Repository (R2R) program is working to ensure open access to environmental sensor data routinely acquired by the U.S. academic research fleet. Currently 25 vessels deliver 7 TB/year of data to R2R from a suite of geophysical, oceanographic, meteorological, and navigational sensors on over 400 cruises worldwide. R2R ensures these data are preserved in trusted repositories, discoverable via standard protocols, and adequately documented for reuse. R2R has recently expanded to include the vessels Sikuliaq, operated by the University of Alaska; Falkor, operated by the Schmidt Ocean Institute; and Ronald H. Brown and Okeanos Explorer, operated by NOAA. R2R maintains a master catalog of U.S. research cruises, currently holding over 4,670 expeditions including vessel and cruise identifiers, start/end dates and ports, project titles and funding awards, science parties, dataset inventories with instrument types and file formats, data quality assessments, and links to related content at other repositories. Standard post-field cruise products are published including shiptrack navigation, near-real-time MET/TSG data, underway geophysical profiles, and CTD profiles. Software tools available to users include the R2R Event Logger and the R2R Nav Manager. A Digital Object Identifier (DOI) is published for each cruise, original field sensor dataset, standard post-field product, and document (e.g. cruise report) submitted by the science party. Scientists are linked to personal identifiers such as ORCIDs where available. Using standard identifiers such as DOIs and ORCIDs facilitates linking with journal publications and generation of citation metrics. R2R collaborates in the Ocean Data Interoperability Platform (ODIP) to strengthen links among regional and national data systems, populates U.S. cruises in the POGO global catalog, and is working toward membership in the DataONE alliance. It is a lead partner in the EarthCube GeoLink project, developing Semantic Web technologies to share data and documentation between repositories, and in the newly-launched EarthCube SeaView project, delivering data from R2R and other ocean data facilities to scientists using the Ocean Data View (ODV) software tool.

Semantic Web-based digital, field and virtual geological

NASA Astrophysics Data System (ADS)

Babaie, H. A.

2012-12-01

Digital, field and virtual Semantic Web-based education (SWBE) of geological mapping requires the construction of a set of searchable, reusable, and interoperable digital learning objects (LO) for learners, teachers, and authors. These self-contained units of learning may be text, image, or audio, describing, for example, how to calculate the true dip of a layer from two structural contours or find the apparent dip along a line of section. A collection of multi-media LOs can be integrated, through domain and task ontologies, with mapping-related learning activities and Web services, for example, to search for the description of lithostratigraphic units in an area, or plotting orientation data on stereonet. Domain ontologies (e.g., GeologicStructure, Lithostratigraphy, Rock) represent knowledge in formal languages (RDF, OWL) by explicitly specifying concepts, relations, and theories involved in geological mapping. These ontologies are used by task ontologies that formalize the semantics of computational tasks (e.g., measuring the true thickness of a formation) and activities (e.g., construction of cross section) for all actors to solve specific problems (making map, instruction, learning support, authoring). A SWBE system for geological mapping should also involve ontologies to formalize teaching strategy (pedagogical styles), learner model (e.g., for student performance, personalization of learning), interface (entry points for activities of all actors), communication (exchange of messages among different components and actors), and educational Web services (for interoperability). In this ontology-based environment, actors interact with the LOs through educational servers, that manage (reuse, edit, delete, store) ontologies, and through tools which communicate with Web services to collect resources and links to other tools. Digital geological mapping involves a location-based, spatial organization of geological elements in a set of GIS thematic layers. Each layer in the stack assembles a set of polygonal (e.g., formation, member, intrusion), linear (e.g., fault, contact), and/or point (e.g., sample or measurement site) geological elements. These feature classes, represented in domain ontologies by classes, have their own sets of property (attribute, association relation) and topological (e.g., overlap, adjacency, containment), and network (cross-cuttings; connectivity) relationships. Since geological mapping involves describing and depicting different aspects of each feature class (e.g., contact, formation, structure), the same geographic region may be investigated by different communities, for example, for its stratigraphy, rock type, structure, soil type, and isotopic and paleontological age, using sets of ontologies. These data can become interconnected applying the Semantic Web technologies, on the Linked Open Data Cloud, based on their underlying common geographic coordinates. Sets of geological data published on the Cloud will include multiple RDF links to Cloud's geospatial nodes such as GeoNames and Linked GeoData. During mapping, a device such as smartphone, laptop, or iPad, with GPS and GIS capability and a DBpedia Mobile client, can use the current position to discover and query all the geological linked data, and add new data to the thematic layers and publish them to the Cloud.

Communication: Relationship between solute localization and diffusion in a dynamically constrained polymer system

DOE Office of Scientific and Technical Information (OSTI.GOV)

Saylor, David M.; Jawahery, Sudi; Silverstein, Joshua S.

2016-07-21

We investigate the link between dynamic localization, characterized by the Debye–Waller factor, 〈u{sup 2}〉, and solute self-diffusivity, D, in a polymer system using atomistic molecular dynamics simulations and vapor sorption experiments. We find a linear relationship between lnD and 1/〈u{sup 2}〉 over more than four decades of D, encompassing most of the glass formation regime. The observed linearity is consistent with the Langevin dynamics in a periodically varying potential field and may offer a means to rapidly assess diffusion based on the characterization of dynamic localization.

Leukocytes and the natural history of deep vein thrombosis: current concepts and future directions

PubMed Central

P, Saha; J, Humphries; B, Modarai; K, Mattock; M, Waltham; C, Evans; A, Ahmad; A, Patel; S, Premaratne; OTA, Lyons; A, Smith

2011-01-01

Observational studies have shown that inflammatory cells accumulate within the thrombus and surrounding vein wall during the natural history of venous thrombosis. More recent studies have begun to unravel the mechanisms that regulate this interaction and have confirmed that thrombosis and inflammation are intimately linked. This review outlines our current knowledge of the complex relationship between inflammatory cell activity and venous thrombosis and highlights new areas of research in this field. A better understanding of this relationship could lead to the development of novel therapeutic targets that inhibit thrombus formation or promote its resolution. PMID:21325673

Linking magnetite in the abdomen of honey bees to a magnetoreceptive function

PubMed Central

Lambinet, Veronika; Hayden, Michael E.; Reigl, Katharina; Gomis, Surath

2017-01-01

Previous studies of magnetoreception in honey bees, Apis mellifera, focused on the identification of magnetic material, its formation, the location of the receptor and potential underlying sensory mechanisms, but never directly linked magnetic material to a magnetoreceptive function. In our study, we demonstrate that ferromagnetic material consistent with magnetite plays an integral role in the bees' magnetoreceptor. Subjecting lyophilized and pelletized bee tagmata to analyses by a superconducting quantum interference device generated a distinct hysteresis loop for the abdomen but not for the thorax or the head of bees, indicating the presence of ferromagnetic material in the bee abdomen. Magnetic remanence of abdomen pellets produced from bees that were, or were not, exposed to the 2.2-kOe field of a magnet while alive differed, indicating that magnet exposure altered the magnetization of this magnetite in live bees. In behavioural two-choice field experiments, bees briefly exposed to the same magnet, but not sham-treated control bees, failed to sense a custom-generated magnetic anomaly, indicating that magnet exposure had rendered the bees' magnetoreceptor dysfunctional. Our data support the conclusion that honey bees possess a magnetite-based magnetoreceptor located in the abdomen. PMID:28330921

Linking magnetite in the abdomen of honey bees to a magnetoreceptive function.

PubMed

Lambinet, Veronika; Hayden, Michael E; Reigl, Katharina; Gomis, Surath; Gries, Gerhard

2017-03-29

Previous studies of magnetoreception in honey bees, Apis mellifera , focused on the identification of magnetic material, its formation, the location of the receptor and potential underlying sensory mechanisms, but never directly linked magnetic material to a magnetoreceptive function. In our study, we demonstrate that ferromagnetic material consistent with magnetite plays an integral role in the bees' magnetoreceptor. Subjecting lyophilized and pelletized bee tagmata to analyses by a superconducting quantum interference device generated a distinct hysteresis loop for the abdomen but not for the thorax or the head of bees, indicating the presence of ferromagnetic material in the bee abdomen. Magnetic remanence of abdomen pellets produced from bees that were, or were not, exposed to the 2.2-kOe field of a magnet while alive differed, indicating that magnet exposure altered the magnetization of this magnetite in live bees. In behavioural two-choice field experiments, bees briefly exposed to the same magnet, but not sham-treated control bees, failed to sense a custom-generated magnetic anomaly, indicating that magnet exposure had rendered the bees' magnetoreceptor dysfunctional. Our data support the conclusion that honey bees possess a magnetite-based magnetoreceptor located in the abdomen. © 2017 The Authors.

Enhancing gene regulatory network inference through data integration with markov random fields

DOE PAGES

Banf, Michael; Rhee, Seung Y.

2017-02-01

Here, a gene regulatory network links transcription factors to their target genes and represents a map of transcriptional regulation. Much progress has been made in deciphering gene regulatory networks computationally. However, gene regulatory network inference for most eukaryotic organisms remain challenging. To improve the accuracy of gene regulatory network inference and facilitate candidate selection for experimentation, we developed an algorithm called GRACE (Gene Regulatory network inference ACcuracy Enhancement). GRACE exploits biological a priori and heterogeneous data integration to generate high- confidence network predictions for eukaryotic organisms using Markov Random Fields in a semi-supervised fashion. GRACE uses a novel optimization schememore » to integrate regulatory evidence and biological relevance. It is particularly suited for model learning with sparse regulatory gold standard data. We show GRACE’s potential to produce high confidence regulatory networks compared to state of the art approaches using Drosophila melanogaster and Arabidopsis thaliana data. In an A. thaliana developmental gene regulatory network, GRACE recovers cell cycle related regulatory mechanisms and further hypothesizes several novel regulatory links, including a putative control mechanism of vascular structure formation due to modifications in cell proliferation.« less

Enhancing gene regulatory network inference through data integration with markov random fields

DOE Office of Scientific and Technical Information (OSTI.GOV)

Banf, Michael; Rhee, Seung Y.

Here, a gene regulatory network links transcription factors to their target genes and represents a map of transcriptional regulation. Much progress has been made in deciphering gene regulatory networks computationally. However, gene regulatory network inference for most eukaryotic organisms remain challenging. To improve the accuracy of gene regulatory network inference and facilitate candidate selection for experimentation, we developed an algorithm called GRACE (Gene Regulatory network inference ACcuracy Enhancement). GRACE exploits biological a priori and heterogeneous data integration to generate high- confidence network predictions for eukaryotic organisms using Markov Random Fields in a semi-supervised fashion. GRACE uses a novel optimization schememore » to integrate regulatory evidence and biological relevance. It is particularly suited for model learning with sparse regulatory gold standard data. We show GRACE’s potential to produce high confidence regulatory networks compared to state of the art approaches using Drosophila melanogaster and Arabidopsis thaliana data. In an A. thaliana developmental gene regulatory network, GRACE recovers cell cycle related regulatory mechanisms and further hypothesizes several novel regulatory links, including a putative control mechanism of vascular structure formation due to modifications in cell proliferation.« less

Signatures of filamentary superconductivity in antiferromagnetic BaFe 2As 2 single crystals

DOE PAGES

Moseley, D. A.; Yates, K. A.; Branford, W. R.; ...

2015-08-24

In this paper, we present ac susceptibility and magnetotransport measurements on aged single crystals of the ferropnictide parent compound, BaFe 2As 2 with a paramagnetic-to-antiferromagnetic transition temperature of 134 K. The ac susceptibility shows the clear onset of a partial diamagnetic response with an onset temperature, commensurate with a subtle downturn in resistivity at approximately 20 K. Below 20 K the magnetotransport shows in-plane anisotropy, magnetic-field history dependence and a hysteretic signature. Above 20 K the crystals show the widely reported high-field linear magnetoresistance. An enhanced noise signature in ac susceptibility is observed above 20 K, which varies in character with amplitude and frequency of the ac signal. The hysteresis in magnetoresistance and the observed sensitivity of the superconducting phase to the amplitude of the ac signal are indicative characteristics of granular or weakly linked filamentary superconductivity. Furthermore, these features taken together with the observed noise signature abovemore » $$T_{\\mathrm{c}}$$ suggests a link between the formation of the superconducting filamentary phase and the freezing of antiphase domain walls, known to exist in these materials.« less

Diatom aggregation and dimethylsulfide production in phytoplankton blooms

DOE Office of Scientific and Technical Information (OSTI.GOV)

Crocker, K.M.

1994-01-01

Phytoplankton blooms are crucial links in many of the earth's biogeochemical cycles. Blooms take up atmospheric carbon through photosynthesis, and sequester it on the ocean floor by sinking. Aggregation of single cells into [open quote]marine snow[close quote] particles speeds up the sinking of algal cells. Laboratory studies investigating the process of aggregation show that some species have a higher probability of aggregating than others, and that there exist several mechanisms for causing aggregation. Field studies confirm that some species are more likely to be found in aggregates than in the surrounding seawater. High latitude Premnesiophyte blooms are found to producemore » large amounts of dimethylsulflde (DMS), believed to be an important chemical in global thermoregulation. DMS is found to vary diurnally, possibly due to photooxidation by ultraviolet light. This possibility links the effects of DMS on cloud formation with the effects of increased ultraviolet light penetrating the earths ozone layer.« less

Yield and Failure Behavior Investigated for Cross-Linked Phenolic Resins Using Molecular Dynamics

NASA Technical Reports Server (NTRS)

Monk, Joshua D.; Lawson, John W.

2016-01-01

Molecular dynamics simulations were conducted to fundamentally evaluate the yield and failure behavior of cross-linked phenolic resins at temperatures below the glass transition. Yield stress was investigated at various temperatures, strain rates, and degrees of cross-linking. The onset of non-linear behavior in the cross-linked phenolic structures was caused by localized irreversible molecular rearrangements through the rotation of methylene linkers followed by the formation or annihilation of neighboring hydrogen bonds. The yield stress results, with respect to temperature and strain rate, could be fit by existing models used to describe yield behavior of amorphous glasses. The degree of cross-linking only indirectly influences the maximum yield stress through its influence on glass transition temperature (Tg), however there is a strong relationship between the degree of cross-linking and the failure mechanism. Low cross-linked samples were able to separate through void formation, whereas the highly cross-linked structures exhibited bond scission.

The effect of contextual cues on the encoding of motor memories.

PubMed

Howard, Ian S; Wolpert, Daniel M; Franklin, David W

2013-05-01

Several studies have shown that sensory contextual cues can reduce the interference observed during learning of opposing force fields. However, because each study examined a small set of cues, often in a unique paradigm, the relative efficacy of different sensory contextual cues is unclear. In the present study we quantify how seven contextual cues, some investigated previously and some novel, affect the formation and recall of motor memories. Subjects made movements in a velocity-dependent curl field, with direction varying randomly from trial to trial but always associated with a unique contextual cue. Linking field direction to the cursor or background color, or to peripheral visual motion cues, did not reduce interference. In contrast, the orientation of a visual object attached to the hand cursor significantly reduced interference, albeit by a small amount. When the fields were associated with movement in different locations in the workspace, a substantial reduction in interference was observed. We tested whether this reduction in interference was due to the different locations of the visual feedback (targets and cursor) or the movements (proprioceptive). When the fields were associated only with changes in visual display location (movements always made centrally) or only with changes in the movement location (visual feedback always displayed centrally), a substantial reduction in interference was observed. These results show that although some visual cues can lead to the formation and recall of distinct representations in motor memory, changes in spatial visual and proprioceptive states of the movement are far more effective than changes in simple visual contextual cues.

Investigating the link between imipenem resistance and biofilm formation by Pseudomonas aeruginosa.

PubMed

Musafer, Hadeel K; Kuchma, Sherry L; Naimie, Amanda A; Schwartzman, Joseph D; Al-Mathkhury, Harith J Fahad; O'Toole, George A

2014-07-01

Pseudomonas aeruginosa, a ubiquitous environmental organism, is a difficult-to-treat opportunistic pathogen due to its broad-spectrum antibiotic resistance and its ability to form biofilms. In this study, we investigate the link between resistance to a clinically important antibiotic, imipenem, and biofilm formation. First, we observed that the laboratory strain P. aeruginosa PAO1 carrying a mutation in the oprD gene, which confers resistance to imipenem, showed a modest reduction in biofilm formation. We also observed an inverse relationship between imipenem resistance and biofilm formation for imipenem-resistant strains selected in vitro, as well as for clinical isolates. We identified two clinical isolates of P. aeruginosa from the sputum of cystic fibrosis patients that formed robust biofilms, but were sensitive to imipenem (MIC ≤ 2 μg/ml). To test the hypothesis that there is a general link between imipenem resistance and biofilm formation, we performed transposon mutagenesis of these two clinical strains to identify mutants defective in biofilm formation, and then tested these mutants for imipenem resistance. Analysis of the transposon mutants revealed a role for previously described biofilm factors in these clinical isolates of P. aeruginosa, including mutations in the pilY1, pilX, pilW, algC, and pslI genes, but none of the biofilm-deficient mutants became imipenem resistant (MIC ≥ 8 μg/ml), arguing against a general link between biofilm formation and resistance to imipenem. Thus, assessing biofilm formation capabilities of environmental isolates is unlikely to serve as a good predictor of imipenem resistance. We also discuss our findings in light of the limited literature addressing planktonic antibiotic resistance factors that impact biofilm formation.

Meteorite crater impact study: a new way to study seismology at school with exciting experiments, and an example of meteorite astroblema in France (Rochechouart)

NASA Astrophysics Data System (ADS)

Carrer, Diane; Berenguer, Jean-Luc; MacMurray, Andrew

2016-04-01

The InSIGHT mission to Mars (Interior Exploration using Seismic Investigations, Geodesy and Heat Transport) supported by NASA, IPGP and CNES, is a great opportunity for teachers and pupils to study the Red planet, but also to study other fields of geology at school, such as seismology. With our pupils, we are following the InSight mission and we look forward to analyze seismic data registered by the SEIS seismometer , once it will be available (the InSight mission will launch in 2018 from California, and will land to Mars in 2018 or 2019). As this mission needs meteorite impacts to generate seismic waves ( to discover the Martian interior structure) , we've decided to model those meteorite strikes in the classroom. With our pupils, we've modeled meteorite impact craters with different impactors , such as tennis balls, baseballs, or pingpong balls, and used an analogue substratum made by flour and cocoa. Then, we kept on going our geophysical investigation , studying several parameters. For instance, we've studied the link between size of impactor and size of crater , the link between mass of impactor and Crater Formation, and the link between velocity of impactor and crater formation. In this geophysical approach , potential energy and kinetic energy can be introduced in terms of energy transfer as the impactor falls ( calculation of the velocity of impact and plotting that against crater diameter using v = (2gh)1/2). For each crater formation made in class by students, we have registered seismological data thanks to Audacity software, and study the seismic signal propagation. This exemple of hands-on activity with pupils, and its wide range of geophysical calculation shows how we can do simple experiment modeling meteorite crater impact and exploit registered seismological data at school. We've finaly focused our work with the very famous example of the astroblema of Rochechouart in the South-west of France ( crater formation : - 214 My) , in which it's easy to recognize every typical structure of crater formation (ejecta blankets, overturned crater rim) . In this activity, pupils understand how a model in class can be close to real geological objects.

mz5: Space- and Time-efficient Storage of Mass Spectrometry Data Sets*

PubMed Central

Wilhelm, Mathias; Kirchner, Marc; Steen, Judith A. J.; Steen, Hanno

2012-01-01

Across a host of MS-driven-omics fields, researchers witness the acquisition of ever increasing amounts of high throughput MS data and face the need for their compact yet efficiently accessible storage. Addressing the need for an open data exchange format, the Proteomics Standards Initiative and the Seattle Proteome Center at the Institute for Systems Biology independently developed the mzData and mzXML formats, respectively. In a subsequent joint effort, they defined an ontology and associated controlled vocabulary that specifies the contents of MS data files, implemented as the newer mzML format. All three formats are based on XML and are thus not particularly efficient in either storage space requirements or read/write speed. This contribution introduces mz5, a complete reimplementation of the mzML ontology that is based on the efficient, industrial strength storage backend HDF5. Compared with the current mzML standard, this strategy yields an average file size reduction to ∼54% and increases linear read and write speeds ∼3–4-fold. The format is implemented as part of the ProteoWizard project and is available under a permissive Apache license. Additional information and download links are available from http://software.steenlab.org/mz5. PMID:21960719

Star cluster formation history along the minor axis of the Large Magellanic Cloud

NASA Astrophysics Data System (ADS)

Piatti, Andrés E.; Cole, Andrew A.; Emptage, Bryn

2018-01-01

We analysed Washington CMT1 photometry of star clusters located along the minor axis of the Large Magellanic Cloud (LMC), from the LMC optical centre up to ∼39° outwards to the North-West. The data base was exploited in order to search for new star cluster candidates, to produce cluster CMDs cleaned from field star contamination and to derive age estimates for a statistically complete cluster sample. We confirmed that 146 star cluster candidates are genuine physical systems, and concluded that an overall ∼30 per cent of catalogued clusters in the surveyed regions are unlikely to be true physical systems. We did not find any new cluster candidates in the outskirts of the LMC (deprojected distance ≳ 8°). The derived ages of the studied clusters are in the range 7.2 < log(t yr-1) ≤ 9.4, with the sole exception of the globular cluster NGC 1786 (log(t yr-1) = 10.10). We also calculated the cluster frequency for each region, from which we confirmed previously proposed outside-in formation scenarios. In addition, we found that the outer LMC fields show a sudden episode of cluster formation (log(t yr-1) ∼7.8-7.9) which continued until log(t yr-1) ∼7.3 only in the outermost LMC region. We link these features to the first pericentre passage of the LMC to the Milky Way (MW), which could have triggered cluster formation due to ram pressure interaction between the LMC and MW halo.

Enzymatic Addition of Alcohols to Terpenes by Squalene Hopene Cyclase Variants.

PubMed

Kühnel, Lisa C; Nestl, Bettina M; Hauer, Bernhard

2017-11-16

Squalene-hopene cyclases (SHCs) catalyze the polycyclization of squalene into a mixture of hopene and hopanol. Recently, amino-acid residues lining the catalytic cavity of the SHC from Alicyclobacillus acidocaldarius were replaced by small and large hydrophobic amino acids. The alteration of leucine 607 to phenylalanine resulted in increased enzymatic activity towards the formation of an intermolecular farnesyl-farnesyl ether product from farnesol. Furthermore, the addition of small-chain alcohols acting as nucleophiles led to the formation of non-natural ether-linked terpenoids and, thus, to significant alteration of the product pattern relative to that obtained with the wild type. It is proposed that the mutation of leucine at position 607 may facilitate premature quenching of the intermediate by small alcohol nucleophiles. This mutagenesis-based study opens the field for further intermolecular bond-forming reactions and the generation of non-natural products. © 2017 Wiley-VCH Verlag GmbH & Co. KGaA, Weinheim.

Reviving legacy clay mineralogy data and metadata through the IEDA-CCNY Data Internship Program

NASA Astrophysics Data System (ADS)

Palumbo, R. V.; Randel, C.; Ismail, A.; Block, K. A.; Cai, Y.; Carter, M.; Hemming, S. R.; Lehnert, K.

2016-12-01

Reconstruction of past climate and ocean circulation using ocean sediment cores relies on the use of multiple climate proxies measured on well-studied cores. Preserving all the information collected on a sediment core is crucial for the success of future studies using these unique and important samples. Clay mineralogy is a powerful tool to study weathering processes and sedimentary provenance. In his pioneering dissertation, Pierre Biscaye (1964, Yale University) established the X-Ray Diffraction (XRD) method for quantitative clay mineralogy analyses in ocean sediments and presented data for 500 core-top samples throughout the Atlantic Ocean and its neighboring seas. Unfortunately, the data only exists in analog format, which has discouraged scientists from reusing the data, apart from replication of the published maps. Archiving and preserving this dataset and making it publicly available in a digital format, linked with the metadata from the core repository will allow the scientific community to use these data to generate new findings. Under the supervision of Sidney Hemming and members of the Interdisciplinary Earth Data Alliance (IEDA) team, IEDA-CCNY interns digitized the data and metadata from Biscaye's dissertation and linked them with additional sample metadata using IGSN (International Geo-Sample Number). After compilation and proper documentation of the dataset, it was published in the EarthChem Library where the dataset will be openly accessible, and citable with a persistent DOI (Digital Object Identifier). During this internship, the students read peer-reviewed articles, interacted with active scientists in the field and acquired knowledge about XRD methods and the data generated, as well as its applications. They also learned about existing and emerging best practices in data publication and preservation. Data rescue projects are a fun and interactive way for students to become engaged in the field.

Plasmas in the atmosphere, tectonics and earthquake: a possible link for the crustal diagnosis?

NASA Astrophysics Data System (ADS)

Straser, V.

2017-12-01

An important aspect in the crustal surmise is the potential link between luminous phenomena and the earthquake . The study want to added data to this new geophysics concepts. The method is based on the comparison approach and consist in the data connection on a field in the area of Po Plain (Italy) with professional equipment: cameras, video cameras, spectroscopes, ELF / VLF receivers, Geiger counters and EM fields detectors. The Luminous phenomena sighting is compared 24/7 online with INGV and USGS database. The results show the formation of 2 types of plasma near the soil: Spheroidal shape, yellow-orange, constant brightness, sudden appearances, elevation from the ground between 10 ° -20 °, no noise, no wake emitted, estimated size about 2m, and duration of few seconds. Spheroidal shape, intense red fuzzy coloration, constant brightness, sudden appearances and fast movements in a linear fashion or slow movements, elevation from the ground between 2° to 7 °, no noise, no waves emitted, estimated dimensions over 2m, with a duration from a few seconds to a few minutes. We suppose that the formation of gas, also radioactive such as radon, and the electric charges necessary to trigger plasma, are related to the crustal stress. The rocks are exposed to important tectonics efforts and the outcome is the air ionizations near the soil that produce plasma if there are gas. The appearance of plasma forerun the earthquake that will happen some days later. The Anomalous Luminous phenomena may be related to tectonic activity, and the area of investigation can become a "lab" for research in Physics and Geology for the crustal diagnosis of pre-seismic phase.

Role of disulfide cross-linking of mutant SOD1 in the formation of inclusion-body-like structures.

PubMed

Roberts, Brittany L T; Patel, Kinaree; Brown, Hilda H; Borchelt, David R

2012-01-01

Pathologic aggregates of superoxide dismutase 1 (SOD1) harboring mutations linked to familial amyotrophic lateral sclerosis (fALS) have been shown to contain aberrant intermolecular disulfide cross-links. In prior studies, we observed that intermolecular bonding was not necessary in the formation of detergent- insoluble SOD1 complexes by mutant SOD1, but we were unable to assess whether this type of bonding may be important for pathologic inclusion formation. In the present study, we visually assess the formation of large inclusions by fusing mutant SOD1 to yellow fluorescent protein (YFP). Experimental constructs possessing mutations at all cysteine residues in SOD1 (sites 6, 57, 111, and 146 to F,S,Y,R or G,S,Y,R, respectively) were shown to maintain a high propensity of inclusion formation despite the inability to form disulfide cross-links. Interestingly, although aggregates form when all cysteines were mutated, double mutants of the ALS mutation C6G with an experimental mutation C111S exhibited low aggregation propensity. Overall, this study is an extension of previous work demonstrating that cysteine residues in mutant SOD1 play a role in modulating aggregation and that intermolecular disulfide bonds are not required to produce large intracellular inclusion-like structures.

Modelling of the solar/stellar wind two-jet structure induced by azimuthal stellar magnetic field

NASA Astrophysics Data System (ADS)

Golikov, Evgeniy; Belov, Nickolai; Alexashov, Dmitry; Izmodenov, Vladislav

2016-07-01

Opher et al. (2015), Drake et al. (2015) have shown that the heliospheric magnetic field results in formation of two-jet structure of the solar wind flow in the inner heliosheath, i.e. in the subsonic region between the heliospheric termination shock and the heliopause. In this scenario the heliopause has tube-like topology as compared with sheet-like topology in the most models of the global heliosphere (e.g. Izmodenov and Alexashov, 2015). In this paper we explore the two-jet scenario for the simplified astrosphere with the star is at rest with respect to the circumstellar medium and radial magnetic field is neglected as compared with azimuthal component. Our work is further elaboration of Drake et al. (2015) paper. We performed parametric numerical analyses showing how the structure of the flow changes depending on the model parameters. Also, we present three first integrals of the ideal MHD equations for the considered problem and use them to get links between analytical and numerical considerations.

Transforming Growth Factor-β-Activated Kinase 1 Is Required for Human FcγRIIIb-Induced Neutrophil Extracellular Trap Formation.

PubMed

Alemán, Omar Rafael; Mora, Nancy; Cortes-Vieyra, Ricarda; Uribe-Querol, Eileen; Rosales, Carlos

2016-01-01

Neutrophils (PMNs) are the most abundant leukocytes in the blood. PMN migrates from the circulation to sites of infection where they are responsible for antimicrobial functions. PMN uses phagocytosis, degranulation, and formation of neutrophil extracellular traps (NETs) to kill microbes. Several stimuli, including bacteria, fungi, and parasites, and some pharmacological compounds, such as Phorbol 12-myristate 13-acetate (PMA), are efficient inducers of NETs. Antigen-antibody complexes are also capable of inducing NET formation. Recently, it was reported that FcγRIIIb cross-linking induced NET formation similarly to PMA stimulation. Direct cross-linking of FcγRIIA or integrins did not promote NET formation. FcγRIIIb-induced NET formation presented different kinetics from PMA-induced NET formation, suggesting differences in signaling. Because FcγRIIIb also induces a strong activation of extracellular signal-regulated kinase (ERK) and nuclear factor Elk-1, and the transforming growth factor-β-activated kinase 1 (TAK1) has recently been implicated in ERK signaling, in the present report, we explored the role of TAK1 in the signaling pathway activated by FcγRIIIb leading to NET formation. FcγRIIIb was stimulated by specific monoclonal antibodies, and NET formation was evaluated in the presence or absence of pharmacological inhibitors. The antibiotic LL Z1640-2, a selective inhibitor of TAK1 prevented FcγRIIIb-induced, but not PMA-induced NET formation. Both PMA and FcγRIIIb cross-linking induced phosphorylation of ERK. But, LL Z1640-2 only inhibited the FcγRIIIb-mediated activation of ERK. Also, only FcγRIIIb, similarly to transforming growth factor-β-induced TAK1 phosphorylation. A MEK (ERK kinase)-specific inhibitor was able to prevent ERK phosphorylation induced by both PMA and FcγRIIIb. These data show for the first time that FcγRIIIb cross-linking activates TAK1, and that this kinase is required for triggering the MEK/ERK signaling pathway to NETosis.

Palaeogeographical peculiarities of the Pabdeh Formation (Paleogene) in Iran: New evidence of global diversity-determined geological heritage

NASA Astrophysics Data System (ADS)

Habibi, Tahereh; Nielsen, Jan K.; Ponedelnik, Alena A.; Ruban, Dmitry A.

2017-11-01

Unique palaeogeographical peculiarities of sedimentary formations are important for geological heritage conservation and use for the purposes of tourism. The heritage value of the Pabdeh Formation (Paleocene-Oligocene) of the Zagros Fold-Thrust Belt in Iran has been investigated. The uniqueness of its palaeogeographical peculiarities has been assessed on the basis of the literature, field studies of three representative sections in the Fars Province (Kavar, Zanjiran, and Shahneshin sections), and comparison with the similar features known in Iran and globally. The Pabdeh Formation reflects the process of mixed siliciclastic-carbonate ramp progradation and the onset of a typical carbonate platform. The other unique features include representation of mesopelagic palaeohabitat, specific trace fossil assemblages, prehistoric bituminous artefacts (production of which was linked to the Pabdeh deposits), etc. It is established that the palaeogeographical type of geological heritage of the Pabdeh Formation is represented by all known subtypes, namely facies, palaeoecosystem, ichnological, taphonomical, event, and geoarchaeological subtypes. Their rank varies between regional and global. The very fact of co-occurrence of these subtypes determines the global importance of the entire palaeogeographical type in the case of this formation. The establishment of geopark in the Zagros Fold-Thrust Belt will facilitate adequate use of the Pabdeh Formation for the purpose of geotourism development. The aesthetic properties (rocks of different colour and striped patterns of outcrops) increase the attractiveness of this geological body to visitors.

Link Performance Analysis and monitoring - A unified approach to divergent requirements

NASA Astrophysics Data System (ADS)

Thom, G. A.

Link Performance Analysis and real-time monitoring are generally covered by a wide range of equipment. Bit Error Rate testers provide digital link performance measurements but are not useful during real-time data flows. Real-time performance monitors utilize the fixed overhead content but vary widely from format to format. Link quality information is also present from signal reconstruction equipment in the form of receiver AGC, bit synchronizer AGC, and bit synchronizer soft decision level outputs, but no general approach to utilizing this information exists. This paper presents an approach to link tests, real-time data quality monitoring, and results presentation that utilizes a set of general purpose modules in a flexible architectural environment. The system operates over a wide range of bit rates (up to 150 Mbs) and employs several measurement techniques, including P/N code errors or fixed PCM format errors, derived real-time BER from frame sync errors, and Data Quality Analysis derived by counting significant sync status changes. The architecture performs with a minimum of elements in place to permit a phased update of the user's unit in accordance with his needs.

On the relationship between magnetic cancellation and UV burst formation

NASA Astrophysics Data System (ADS)

Nelson, C. J.; Doyle, J. G.; Erdélyi, R.

2016-12-01

Burst-like events with signatures in the UV are often observed co-spatial to strong line-of-sight photospheric magnetic fields. Several authors, for example, have noted the spatial relationship between Ellerman bombs (EBs) and moving magnetic features (MMFs), regions of flux which disconnect from a sunspot or pore before propagating away in the moat flow and often displaying evidence of cancellation. In this article, data collected by the Solar Dynamics Observatory's Helioseismic and Magnetic Imager and Atmospheric Imaging Assembly are analysed in an attempt to understand the potential links between such cancellation and UV burst formation. Two MMFs from AR 11579, three bi-poles from AR 11765, and six bi-poles (four of which were co-spatial to Interface Region Imaging Spectrograph bursts) in AR 11850 were identified for analysis. All of these cancellation features were found to have lifetimes of the order hours and cancellation rates of the order 1014-1015 Mx s-1. Hα line wing data from the Dunn Solar Telescope's Interferometric BIdimensional Spectrometer were also available for AR 11579 facilitating a discussion of links between MMFs and EBs. Using an algebraic model of photospheric magnetic reconnection, the measured cancellation rates are then used to ascertain estimates of certain quantities (such as upflow speeds, jet extents, and potential energy releases), which compared reasonably to the properties of EBs reported within the literature. Our results suggest that cancellation rates of the order measured here are capable of supplying enough energy to drive certain UV bursts (including EBs), however, they are not a guaranteeing condition for burst formation.

Two DD-carboxypeptidases from Mycobacterium smegmatis affect cell surface properties through regulation of peptidoglycan cross-linking and glycopeptidolipids.

PubMed

Pandey, Satya Deo; Pal, Shilpa; Kumar N, Ganesh; Bansal, Ankita; Mallick, Sathi; Ghosh, Anindya S

2018-05-07

During the peptidoglycan (PG) maturation of mycobacteria, the glycan strands are interlinked by both 3-3 (between two meso-DAP) and 4-3 cross-links (between D-ala and meso-DAP), though there is a predominance (60-80%) of 3-3 cross-links. The DD-CPases act on pentapeptides to generate tetrapeptides that are used by LD-transpeptidases as substrates to form 3-3 cross-links. Therefore, DD-CPases play a crucial role in mycobacterial PG cross-link formation. However, the physiology of DD-CPases in mycobacteria is relatively unexplored. Here, we deleted two DD-CPase genes, msmeg_2433 , and msmeg_2432 , both individually and in combination, from Mycobacterium smegmatis mc 2 155. Though the single DD-CPase deletions had no significant impact on the mycobacterial physiology, many interesting functional alterations were observed in the double deletion mutant, viz. , a predominance in PG cross-link formation was shifted from 3-3 cross-links to 4-3, cell surface glycopeptidolipid (GPL) expression was reduced and susceptibility towards β-lactams and anti-tubercular agents was enhanced. Moreover, the existence of the double mutant within murine macrophages was better as compared to the parent. Interestingly, the complementation with any one of the DD-CPase genes could restore the wild-type phenotype. In a nutshell, we infer that the altered ratio of 4-3: 3-3 PG cross-links might have influenced the expression of surface GPLs, colony morphology, biofilm formation,, drug susceptibility and subsistence of the cells within macrophages. Importance The glycan strands in mycobacterial peptidoglycan (PG) are interlinked by both 3-3 and 4-3 cross-links. The DD-CPases generate tetrapeptides by acting on the pentapeptides, and LD-transpeptidases use tetrapeptides as substrates to form 3-3 cross-links. Here, we showed that simultaneous deletions of two DD-CPases alter the nature of PG cross-linking from 3-3 cross-links to 4-3 cross-links. The deletions subsequently decrease the expression of Glycopeptidolipids (a significant surface lipid present in many non-tuberculous mycobacteria including Mycobacterium smegmatis ) and affect other physiological parameters like cell morphology, growth rate, biofilm formation, antibiotic susceptibility and existence within murine macrophages. Thus, unraveling the physiology of DD-CPases might help us design anti-mycobacterial therapeutics in future. Copyright © 2018 American Society for Microbiology.

Diagnostic techniques in deflagration and detonation studies.

PubMed

Proud, William G; Williamson, David M; Field, John E; Walley, Stephen M

2015-12-01

Advances in experimental, high-speed techniques can be used to explore the processes occurring within energetic materials. This review describes techniques used to study a wide range of processes: hot-spot formation, ignition thresholds, deflagration, sensitivity and finally the detonation process. As this is a wide field the focus will be on small-scale experiments and quantitative studies. It is important that such studies are linked to predictive models, which inform the experimental design process. The stimuli range includes, thermal ignition, drop-weight, Hopkinson Bar and Plate Impact studies. Studies made with inert simulants are also included as these are important in differentiating between reactive response and purely mechanical behaviour.

Influence of electric field on the amyloid-β(29-42) peptides embedded in a membrane bilayer

NASA Astrophysics Data System (ADS)

Lu, Yan; Shi, Xiao-Feng; Salsbury, Freddie R.; Derreumaux, Philippe

2018-01-01

Alzheimer's disease is linked to various types of aggregates of amyloid-β (Aβ) peptide and their interactions with protein receptors and neuronal cell membranes. Little is known on the impact of the electric field on membrane-embedded Aβ. Here we use atomistic molecular dynamics simulations to study the effects of a constant electric field on the conformations of Aβ29-42 dimer inside a membrane, where the electric field has a strength of 20 mV/nm which exists across the membrane of a human neuron. Starting from α-helix peptides, the transmembrane electric field (TMEF) accelerates the conversion from the Gly-out substate to the Gly-side and Gly-in substates. Starting from β-sheet peptides, TMEF induces changes of the kink and tilt angles at Gly33 and Gly37. Overall, in the simulations totaling 10 μs, TMEF establishes new ground states for the dimer, similar to induced-fit in ligand binding. Our findings indicate that TMEF can stabilize rare conformations of amyloid peptides, and this could influence the cleavage of the amyloid precursor protein and the formation of β-sheet oligomers in membrane bilayers.

Predicting links based on knowledge dissemination in complex network

NASA Astrophysics Data System (ADS)

Zhou, Wen; Jia, Yifan

2017-04-01

Link prediction is the task of mining the missing links in networks or predicting the next vertex pair to be connected by a link. A lot of link prediction methods were inspired by evolutionary processes of networks. In this paper, a new mechanism for the formation of complex networks called knowledge dissemination (KD) is proposed with the assumption of knowledge disseminating through the paths of a network. Accordingly, a new link prediction method-knowledge dissemination based link prediction (KDLP)-is proposed to test KD. KDLP characterizes vertex similarity based on knowledge quantity (KQ) which measures the importance of a vertex through H-index. Extensive numerical simulations on six real-world networks demonstrate that KDLP is a strong link prediction method which performs at a higher prediction accuracy than four well-known similarity measures including common neighbors, local path index, average commute time and matrix forest index. Furthermore, based on the common conclusion that an excellent link prediction method reveals a good evolving mechanism, the experiment results suggest that KD is a considerable network evolving mechanism for the formation of complex networks.

Silk Hydrogels of Tunable Structure and Viscoelastic Properties Using Different Chronological Orders of Genipin and Physical Cross-Linking.

PubMed

Elliott, Winston H; Bonani, Walter; Maniglio, Devid; Motta, Antonella; Tan, Wei; Migliaresi, Claudio

2015-06-10

Catering the hydrogel manufacturing process toward defined viscoelastic properties for intended biomedical use is important to hydrogel scaffolding function and cell differentiation. Silk fibroin hydrogels may undergo "physical" cross-linking through β-sheet crystallization during high pressure carbon dioxide treatment, or covalent "chemical" cross-linking by genipin. We demonstrate here that time-dependent mechanical properties are tunable in silk fibroin hydrogels by altering the chronological order of genipin cross-linking with β-sheet formation. Genipin cross-linking before β-sheet formation affects gelation mechanics through increased molecular weight, affecting gel morphology, and decreasing stiffness response. Alternately, genipin cross-linking after gelation anchored amorphous regions of the protein chain, and increasing stiffness. These differences are highlighted and validated through large amplitude oscillatory strain near physiologic levels, after incorporation of material characterization at molecular and micron length scales.

Towards the Improvement of the Student Experience of Assessment and Feedback in Construction Management Education

ERIC Educational Resources Information Center

Scott, Lloyd; Fortune, Chris

2013-01-01

It is widely accepted across Higher Education that assessment practices have a link with learning and a key factor in this link is formative assessment. Formative assessment is generally defined as taking place during a module/programme with the express purpose of improving and enhancing student learning. It is important to understand how…

Emergence of Magnetic Flux Generated in a Solar Convective Dynamo. I. The Formation of Sunspots and Active Regions, and The Origin of Their Asymmetries

DOE Office of Scientific and Technical Information (OSTI.GOV)

Chen, Feng; Rempel, Matthias; Fan, Yuhong, E-mail: chenfeng@ucar.edu

We present a realistic numerical model of sunspot and active region formation based on the emergence of flux bundles generated in a solar convective dynamo. To this end, we use the magnetic and velocity fields in a horizontal layer near the top boundary of the solar convective dynamo simulation to drive realistic radiative-magnetohydrodynamic simulations of the uppermost layers of the convection zone. The main results are as follows. (1) The emerging flux bundles rise with the mean speed of convective upflows and fragment into small-scale magnetic elements that further rise to the photosphere, where bipolar sunspot pairs are formed throughmore » the coalescence of the small-scale magnetic elements. (2) Filamentary penumbral structures form when the sunspot is still growing through ongoing flux emergence. In contrast to the classical Evershed effect, the inflow seems to prevail over the outflow in a large part of the penumbra. (3) A well-formed sunspot is a mostly monolithic magnetic structure that is anchored in a persistent deep-seated downdraft lane. The flow field outside the spot shows a giant vortex ring that comprises an inflow below 15 Mm depth and an outflow above 15 Mm depth. (4) The sunspots successfully reproduce the fundamental properties of the observed solar active regions, including the more coherent leading spots with a stronger field strength, and the correct tilts of bipolar sunspot pairs. These asymmetries can be linked to the intrinsic asymmetries in the magnetic and flow fields adapted from the convective dynamo simulation.« less

A Census of marine life: unknowable or just unknown?

USGS Publications Warehouse

O'Dor, Ron; Decker, Cynthia J.

2002-01-01

As an introduction to the entire volume, this article outlines the relationships among the five elements of the Census of Marine Life (CoML) that create new knowledge: (1) The Ocean Biogeographic Information System (OBIS), a marine component of the Global Biodiversity Information Facility, links marine databases around the world to provide an Internet accessible, dynamic interface for comparing species-level, geo-referenced biodiversity data in relation to ocean habitats. The entire CoML field project data will be managed in and accessible through OBIS. (2) The History of Marine Animal Populations (HMAP) is a unique new synthesis of historical and biological research that will document marine biodiversity, globally, up to 500 years ago, before significant human impact, and store it in formats compatible with modern data in OBIS. (3) The Scientific Committee on Oceanic Research Working Group 118 monitors and recommends advanced marine technologies, ready to be routinely used in CoML field projects. (4) CoML Initial Field Projects develop and calibrate these technologies in selected regions to facilitate and accelerate global biodiversity research. As calibrated technologies and protocols are adopted in many regions, qualitative and quantitative biodiversity discoveries accumulate. (5) The Future of Marine Animal Populations (FMAP) program will insure that the data in OBIS are suitable for modeling and predicting changes in global biodiversity in response to fishing, pollution, and climate change challenges. It will make datasets available for hindcasting and forecasting analyses linked to physical ocean observations and assist in documenting the impacts of conservation efforts on sustainability.

Assembly of bipolar microtubule structures by passive cross-linkers and molecular motors

NASA Astrophysics Data System (ADS)

Johann, D.; Goswami, D.; Kruse, K.

2016-06-01

During cell division, sister chromatids are segregated by the mitotic spindle, a bipolar assembly of interdigitating antiparallel polar filaments called microtubules. The spindle contains the midzone, a stable region of overlapping antiparallel microtubules, that is essential for maintaining bipolarity. Although a lot is known about the molecular players involved, the mechanism underlying midzone formation and maintenance is still poorly understood. We study the interaction of polar filaments that are cross-linked by molecular motors moving directionally and by passive cross-linkers diffusing along microtubules. Using a particle-based stochastic model, we find that the interplay of motors and passive cross-linkers can generate a stable finite overlap between a pair of antiparallel polar filaments. We develop a mean-field theory to study this mechanism in detail and investigate the influence of steric interactions between motors and passive cross-linkers on the overlap dynamics. In the presence of interspecies steric interactions, passive cross-linkers mimic the behavior of molecular motors and stable finite overlaps are generated even for non-cross-linking motors. Finally, we develop a mean-field theory for a bundle of aligned polar filaments and show that they can self-organize into a spindlelike pattern. Our work suggests possible ways as to how cells can generate spindle midzones and control their extensions.

Towards a semantic web of paleoclimatology

NASA Astrophysics Data System (ADS)

Emile-Geay, J.; Eshleman, J. A.

2012-12-01

The paleoclimate record is information-rich, yet signifiant technical barriers currently exist before it can be used to automatically answer scientific questions. Here we make the case for a universal format to structure paleoclimate data. A simple example demonstrates the scientific utility of such a self-contained way of organizing coral data and meta-data in the Matlab language. This example is generalized to a universal ontology that may form the backbone of an open-source, open-access and crowd-sourced paleoclimate database. Its key attributes are: 1. Parsability: the format is self-contained (hence machine-readable), and would therefore enable a semantic web of paleoclimate information. 2. Universality: the format is platform-independent (readable on all computer and operating systems), and language- independent (readable in major programming languages) 3. Extensibility: the format requires a minimum set of fields to appropriately define a paleoclimate record, but allows for the database to grow organically as more records are added, or - equally important - as more metadata are added to existing records. 4. Citability: The format enables the automatic citation of peer- reviewed articles as well as data citations whenever a data record is being used for analysis, making due recognition of scientific work an automatic part and foundational principle of paleoclimate data analysis. 5. Ergonomy: The format will be easy to use, update and manage. This structure is designed to enable semantic searches, and is expected to help accelerate discovery in all workflows where paleoclimate data are being used. Practical steps towards the implementation of such a system at the community level are then discussed.; Preliminary ontology describing relationships between the data and meta-data fields of the Nurhati et al. [2011] climate record. Several fields are viewed as instances of larger classes (ProxyClass,Site,Reference), which would allow computers to perform operations on all records within a specific class (e.g. if the measurement type is δ18O , or if the proxy class is 'Tree Ring Width', or if the resolution is less than 3 months, etc). All records in such a database would be bound to each other by similar links, allowing machines to automatically process any form of query involving existing information. Such a design would also allow growth, by adding records and/or additional information about each record.

Cosmic Deuterium and Social Networking Software

NASA Astrophysics Data System (ADS)

Pasachoff, J. M.; Suer, T.-A.; Lubowich, D. A.; Glaisyer, T.

2006-08-01

For the education of newcomers to a scientific field and for the convenience of students and workers in the field, it is helpful to have all the basic scientific papers gathered. For the study of deuterium in the Universe, in 2004-5 we set up http://www.cosmicdeuterium.info with clickable links to all the historic and basic papers in the field and to many of the current papers. Cosmic deuterium is especially important because all deuterium in the Universe was formed in the epoch of nucleosynthesis in the first 1000 seconds after the Big Bang, so study of its relative abundance (D:H~1:100,000) gives us information about those first minutes of the Universe's life. Thus the understanding of cosmic deuterium is one of the pillars of modern cosmology, joining the cosmic expansion, the 3 degree cosmic background radiation, and the ripples in that background radiation. Studies of deuterium are also important for understanding Galactic chemical evolution, astrochemistry, interstellar processes, and planetary formation. Some papers had to be scanned while others are available at the Astrophysical Data System, adswww.harvard.edu, or to publishers' Websites. By 2006, social networking software (http:tinyurl.com/ zx5hk) had advanced with popular sites like facebook.com and MySpace.com; the Astrophysical Data System had even set up MyADS. Social tagging software sites like http://del.icio.us have made it easy to share sets of links to papers already available online. We have set up http://del.icio.us/deuterium to provide links to many of the papers on cosmicdeuterium.info, furthering previous del.icio.us work on /eclipses and /plutocharon. It is easy for the site owner to add links to a del.icio.us site; it takes merely clicking on a button on the browser screen once the site is opened and the desired link is viewed in a browser. Categorizing different topics by keywords allows subsets to be easily displayed. The opportunity to expose knowledge and build an ecosystem of web pages that use the functionality of a facebook-type application to capture knowledge collaboratively is considerable. Setting up such a system would marry one of the youngest isotopes with the latest software technologies.

Link!: Potential Field Guidance Algorithm for In-Flight Linking of Multi-Rotor Aircraft

NASA Technical Reports Server (NTRS)

Cooper, John R.; Rothhaar, Paul M.

2017-01-01

Link! is a multi-center NASA e ort to study the feasibility of multi-aircraft aerial docking systems. In these systems, a group of vehicles physically link to each other during flight to form a larger ensemble vehicle with increased aerodynamic performance and mission utility. This paper presents a potential field guidance algorithm for a group of multi-rotor vehicles to link to each other during flight. The linking is done in pairs. Each vehicle first selects a mate. Then the potential field is constructed with three rules: move towards the mate, avoid collisions with non-mates, and stay close to the rest of the group. Once a pair links, they are then considered to be a single vehicle. After each pair is linked, the process repeats until there is only one vehicle left. The paper contains simulation results for a system of 16 vehicles.

Collagen cross-linking: insights on the evolution of metazoan extracellular matrix.

PubMed

Rodriguez-Pascual, Fernando; Slatter, David Anthony

2016-11-23

Collagens constitute a large family of extracellular matrix (ECM) proteins that play a fundamental role in supporting the structure of various tissues in multicellular animals. The mechanical strength of fibrillar collagens is highly dependent on the formation of covalent cross-links between individual fibrils, a process initiated by the enzymatic action of members of the lysyl oxidase (LOX) family. Fibrillar collagens are present in a wide variety of animals, therefore often being associated with metazoan evolution, where the emergence of an ancestral collagen chain has been proposed to lead to the formation of different clades. While LOX-generated collagen cross-linking metabolites have been detected in different metazoan families, there is limited information about when and how collagen acquired this particular modification. By analyzing telopeptide and helical sequences, we identified highly conserved, potential cross-linking sites throughout the metazoan tree of life. Based on this analysis, we propose that they have importantly contributed to the formation and further expansion of fibrillar collagens.

Magnetic Evolution Linked to the Interrelated Activity Complexes Involving Transequatorial Coronal Holes

NASA Astrophysics Data System (ADS)

Gutiérrez, Heidy; Taliashvili, Lela; Lazarian, Alexandre

2018-06-01

We studied a magnetic evolution linked to a cadence of interrelated activities developed in a large solar region during Carrington rotations, CRs 2119 - 2121, based on multi-wavelength and multi-spacecraft observations. Three coronal holes (CHs), two transequatorial and one isolated, eight filaments and some active regions were distributed closely in the region. Every of these filaments partial and/or complete eruption was linked to a Coronal Mass Ejection (CME) or coronal jet. We found different types of interrelated activities: eruptions of three pairs of interrelated filaments close to a CH and eruptions of two filaments close to the active region and CH. Some indicators of the magnetic reconnection were observed frequently during the pre- as well as post-filament eruptions. Additionally, post-filament eruption and/or post-CME processes show their implication in the evolution of nearby CHs and newly formed transient CHs or dimming regions, including a new CH formation. We discussed the small- and large-scale magnetic reconfigurations associated with these interrelated activity complexes, the ones involving long-lived transequatorial CHs, and their possible implication in the evolution of the global solar magnetic field, especially with the starting processes of quadruple configuration and polarity reversal of the solar cycle 24.

Coronal Magnetism and Forward Solarsoft Idl Package

NASA Astrophysics Data System (ADS)

Gibson, S. E.

2014-12-01

The FORWARD suite of Solar Soft IDL codes is a community resource for model-data comparison, with a particular emphasis on analyzing coronal magnetic fields. FORWARD may be used both to synthesize a broad range of coronal observables, and to access and compare to existing data. FORWARD works with numerical model datacubes, interfaces with the web-served Predictive Science Inc MAS simulation datacubes and the Solar Soft IDL Potential Field Source Surface (PFSS) package, and also includes several analytic models (more can be added). It connects to the Virtual Solar Observatory and other web-served observations to download data in a format directly comparable to model predictions. It utilizes the CHIANTI database in modeling UV/EUV lines, and links to the CLE polarimetry synthesis code for forbidden coronal lines. FORWARD enables "forward-fitting" of specific observations, and helps to build intuition into how the physical properties of coronal magnetic structures translate to observable properties.

Improvements of fabrication processes and enhancement of critical current densities in (Ba,K)Fe2As2 HIP wires and tapes

NASA Astrophysics Data System (ADS)

Pyon, Sunseng; Suwa, Takahiro; Tamegai, Tsuyoshi; Takano, Katsutoshi; Kajitani, Hideki; Koizumi, Norikiyo; Awaji, Satoshi; Zhou, Nan; Shi, Zhixiang

2018-05-01

We fabricated (Ba,K)Fe2As2 superconducting wires and tapes using the powder-in-tube method and hot isostatic pressing (HIP). HIP wires and tapes showed a high value of transport critical current density (J c) exceeding 100 kAcm‑2 at T = 4.2 K and the self-field. Transport J c in the HIP wire reached 38 kAcm‑2 in a high magnetic field of 100 kOe. This value is almost twice larger than the previous highest value of J c among round wires using iron-based superconductors. Enhancement of J c in the wires and tapes was caused by improvement of the drawing process, which caused degradation of the core, formation of microcracks, weak links between grains, and random orientation of grains. Details of the effect of the improved fabrication processes on the J c are discussed.

Mining chemical information from open patents

PubMed Central

2011-01-01

Linked Open Data presents an opportunity to vastly improve the quality of science in all fields by increasing the availability and usability of the data upon which it is based. In the chemical field, there is a huge amount of information available in the published literature, the vast majority of which is not available in machine-understandable formats. PatentEye, a prototype system for the extraction and semantification of chemical reactions from the patent literature has been implemented and is discussed. A total of 4444 reactions were extracted from 667 patent documents that comprised 10 weeks' worth of publications from the European Patent Office (EPO), with a precision of 78% and recall of 64% with regards to determining the identity and amount of reactants employed and an accuracy of 92% with regards to product identification. NMR spectra reported as product characterisation data are additionally captured. PMID:21999425

The relative importance of physical erosion and soil water dynamics on chemical weathering and soil formation: learning from field and model results

NASA Astrophysics Data System (ADS)

Vanwalleghem, T.; Román, A.; Giraldez, J. V.

2015-12-01

A new model is presented that integrates the effect of landscape evolution and soil formation. This model is based on a daily spatially-explicit soil water balance. Average soil water content, temperature and deep percolation fluxes are linked to weathering and soil formation processes. Model input (temperature and precipitation) for the last 25 000 years was generated on a daily time by combining palaeoclimate data and the WXGEN weather generator. The soil-landscape model was applied to a 48 km2 semi-natural catchment in Southern Spain, with soils developed on granite. Model-generated runoff was used for a first validation against discharge observations. Next, soil formation output was contrasted against experimental data from 10 soil profiles along two catenas. Field data showed an important variation in mobile regolith thickness, between 0,44 and 1,10m, and in chemical weathering along the catena. Southern slopes were characterized by shallower, stonier and carbon-poor soils, while soils on north-facing slopes were deeper, more fine-textured and had a higher carbon content. Chemical depletion fraction was found to vary between 0,41 and 0,72. The lowest overall weathering intensity was found on plateau positions. South facing slopes revealed slightly lower weathering compared to north facing slopes. We attribute this to higher runoff generation and physical erosion rates on north facing slopes, transporting weathered material downslope. Model results corroborate these findings and show continuously wet soils on north-facing slopes with more runoff generation and a steady deep percolation flux during the wet winter season. On south-facing slopes, infiltration is higher and percolation is more erratic over time. Soils on the footslopes then were shown to be significantly impacted by deposition of sediment through lateral erosion fluxes.

Geohydrology and susceptibility of major aquifers to surface contamination in Alabama, area 7

USGS Publications Warehouse

Mooty, W.S.

1987-01-01

The geohydrology and susceptibility of the seven major aquifers to surface contamination in Area 7 - Bibb, Dallas, Hale, Perry, and Wilcox Counties, are described. Aquifers in the northern part of the study area are in Paleozoic limestones and dolomite formations. Deposits in the central part of the study area are predominately of Cretaceous age and contain the Coker, Gordo, and Eutaw aquifers. Although the southern part of the study area has many deposits of Tertiary age, the Ripley Formation of Cretaceous age is the major aquifer. Contamination of any of the major aquifers is improbable because the majority of the recharge area for the primary aquifers is woodland, pasture, or farmland. Downdip from their outcrops, the major aquifers in the study area are protected from land surface contamination by relatively impermeable layers of clay and chalk. The aquifers that are highly susceptible to contamination are the ones in the limestone and dolomite formations in northern Bibb County. Sinkholes exist in the recharge area of these formations and could provide a direct link for contaminates from the land surface to the water table. An area northeast of the Selma well field is also highly susceptible to contamination. The Eutaw Formation in this area is overlain by alluvial deposits that could increase recharge to the aquifer by slowing the runoff rate of surface water. (USGS)

The formation of a cold-core eddy in the East Australian Current

NASA Astrophysics Data System (ADS)

Macdonald, H. S.; Roughan, M.; Baird, M. E.; Wilkin, J.

2016-02-01

Cold-core eddies (CCEs) frequently form in western boundary currents and can affect continental shelf processes. It is not always clear, however, if baroclinic or barotropic instabilities contribute more to their formation. The Regional Ocean Modelling System (ROMS) is used to investigate the ocean state during the formation of a CCE in the East Australian Current (EAC) during October 2009. The observed eddy initially appeared as a small billow (approx. 50 km in length) that perturbed the landward edge of the EAC. The billow grew into a mesoscale CCE (approx. 100 km in diameter), diverting the EAC around it. A ROMS simulation with a realistic wind field reproduced a similar eddy. This eddy formed from negative vorticity waters found on the continental shelf south of the EAC separation point. A sensitivity analysis is performed whereby the impact of 3 different wind forcing scenarios, upwelling, downwelling, and no winds, are investigated. A CCE formed in all wind scenarios despite the wind induced changes in hydrographic conditions in the continental shelf and slope waters. As such, the source of energy for eddy formation did not come from the interactions of wind with the continental shelf waters. Analysis of strain and energy transformation confirms this by showing that the prevailing source of CCE energy was kinetic energy of the offshore EAC. These results clearly link the formation of the CCE to the swift flowing EAC and barotropic instabilities.

Flow Fields of the 3.5 Ga Komati Formation, South Africa: Geochemical, Stratigraphic, and Temporal relationships between Massive, Vesicular, and Spinifex flows

NASA Astrophysics Data System (ADS)

Dann, J. C.

2007-12-01

A challenge of Archean volcanology is to reconstruct submarine flow fields by mapping and analyzing vertically dipping sequences of lavas. Some flow fields are bound by sediments and/or seafloor alteration that mark clear gaps in volcanism. Flow fields in the Lower Komati Fm are defined by alternating layers of komatiite (26% MgO) and komatiitic basalt (15% MgO). Five komatiite flow fields (100-200m thick) repeat the same stratigraphic zoning of spinifex overlying massive komatiite, and each flow field has a distinct Al2O3/CaO, a ratio unaffected by olivine fractionation, consistent with the contention that each komatiite flow field represents a distinct batch of mantle melting. Although massive and spinifex komatiite form distinct stratigraphic units on a map scale, detailed outcrop mapping reveals that the change in flow type represents a transition within a single flow field. In one type of transition, thin massive flows alternate with spinifex flow lobes of a compound flow unit. In another, a vesicular flow along the boundary links the underlying massive komatiite and overlying spinifex flows in time. The vesicular flow has alternating spinifex and vesicular layers that form a distinctive crust above a thick massive interior. Locally, this crust is tilted, intruded by massive komatiite from the interior, and overlain by a thick breccia including a spinifex flow broken into blocks and rotated like dominoes by the tilting. These outcrop relations indicate that spinifex flow lobes were starting to flow over the vesicular flow before it had undergone differential inflation, a temporal link between the lower massive and upper spinifex komatiites consistent with their belonging to the same flow field. The transition in flow type may reflect 1) an overlap of proximal and distal facies of komatiite flows as eruption rates waned and/or 2) thermal maturation prior to eruption. Early, cooler, crystal-rich, massive lava, flowing out as thick sheet flows, was replaced by hotter, crystal-poor, less degassed lava, flowing out as spinifex flows.

Magnetically insulated coaxial vacuum diode with partial space-charge-limited explosive emission from edge-type cathode

NASA Astrophysics Data System (ADS)

Belomyttsev, S. Ya.; Rostov, V. V.; Romanchenko, I. V.; Shunailov, S. A.; Kolomiets, M. D.; Mesyats, G. A.; Sharypov, K. A.; Shpak, V. G.; Ulmaskulov, M. R.; Yalandin, M. I.

2016-01-01

The vacuum current associated with any type of electron emission for arbitrary configuration of the diode depends on the combination of the applied electric field and vacuum space charge (VSC) field created by the current. Such fundamental statement should give very close links between the diode current and the normalized cathode field θ which has been introduced by Forbes in 2008 for planar diodes as a reduction in the cathode surface field: θ = field-with/field-without VSC. This article reports the universal approximation of the type of cos(πθ/2) that is the ratio of the actual current and the fully space-charge-limited current. Also, the theoretical treatment and the experimental method of determination of the dynamic emissive characteristics of the macroscopic explosive emission from edge-type cathodes in the coaxial diode are developed. The experimental results obtained with a picosecond time reference between the cathode voltage and the onset of the high-current electron beam exhibit a good coincidence with the theoretical predictions. The presented methods enable the analysis of a real-time-resolved dynamics associated with the dense, magnetized electron beam formation, acceleration and drift motion, including kinematic effects and the phase-stable excitation of high-power microwave oscillators.

Magnetically insulated coaxial vacuum diode with partial space-charge-limited explosive emission from edge-type cathode

DOE Office of Scientific and Technical Information (OSTI.GOV)

Belomyttsev, S. Ya.; Rostov, V. V.; Romanchenko, I. V.

2016-01-14

The vacuum current associated with any type of electron emission for arbitrary configuration of the diode depends on the combination of the applied electric field and vacuum space charge (VSC) field created by the current. Such fundamental statement should give very close links between the diode current and the normalized cathode field θ which has been introduced by Forbes in 2008 for planar diodes as a reduction in the cathode surface field: θ = field-with/field-without VSC. This article reports the universal approximation of the type of cos(πθ/2) that is the ratio of the actual current and the fully space-charge-limited current. Also, themore » theoretical treatment and the experimental method of determination of the dynamic emissive characteristics of the macroscopic explosive emission from edge-type cathodes in the coaxial diode are developed. The experimental results obtained with a picosecond time reference between the cathode voltage and the onset of the high-current electron beam exhibit a good coincidence with the theoretical predictions. The presented methods enable the analysis of a real-time-resolved dynamics associated with the dense, magnetized electron beam formation, acceleration and drift motion, including kinematic effects and the phase-stable excitation of high-power microwave oscillators.« less

Beebook: light field mapping app

NASA Astrophysics Data System (ADS)

De Donatis, Mauro; Di Pietro, Gianfranco; Rinnone, Fabio

2014-05-01

In the last decade the mobile systems for field digital mapping were developed (see Wikipedia for "Digital geologic mapping"), also against many skeptic traditional geologists. Until now, hardware was often heavy (tablet PC) and software sometime difficult also for expert GIS users. At present, the advent of light tablet and applications makes things easier, but we are far to find a whole solution for a complex survey like the geological one where you have to manage complexities such information, hypothesis, data, interpretation. Beebook is a new app for Android devices, has been developed for fast ad easy mapping work in the field trying to try to solve this problem. The main features are: • off-line raster management, GeoTIFF ed other raster format using; • on-line map visualisation (Google Maps, OSM, WMS, WFS); • SR management and conversion using PROJ.4; • vector file mash-up (KML and SQLite format); • editing of vector data on the map (lines, points, polygons); • augmented reality using "Mixare" platform; • export of vector data in KML, CSV, SQLite (Spatialite) format; • note: GPS or manual point inserting linked to other application files (pictures, spreadsheet, etc.); • form: creation, edition and filling of customized form; • GPS: status control, tracker and positioning on map; • sharing: synchronization and sharing of data, forms, positioning and other information can be done among users. The input methods are different from digital keyboard to fingers touch, from voice recording to stylus. In particular the most efficient way of inserting information is the stylus (or pen): field geologists are familiar with annotation and sketches. Therefore we suggest the use of devices with stylus. The main point is that Beebook is the first "transparent" mobile GIS for tablet and smartphone deriving from previous experience as traditional mapping and different previous digital mapping software ideation and development (MapIT, BeeGIS, Geopaparazzi). Deriving from those experiences, we developed a tool which is easy to use and applicable not only for geology but also to every field survey.

Resilin-like polypeptide-poly(ethylene gylcol) hybrid hydrogels for mechanically-demanding tissue engineering applications

NASA Astrophysics Data System (ADS)

McGann, Christopher Leland

Technological progress in the life sciences and engineering has combined with important insights in the fields of biology and material science to make possible the development of biological substitutes which aim to restore function to damaged tissue. Numerous biomimetic hydrogels have been developed with the purpose of harnessing the regenerative capacity of cells and tissue through the rational deployment of biological signals. Aided by recombinant DNA technology and protein engineering methods, a new class of hydrogel precursor, the biosynthetic protein polymer, has demonstrated great promise towards the development of highly functional tissue engineering materials. In particular, protein polymers based upon resilin, a natural protein elastomer, have demonstrated outstanding mechanical properties that would have great value in soft tissue applications. This dissertation introduces hybrid hydrogels composed of recombinant resilin-like polypeptides (RLPs) cross-linked with multi-arm PEG macromers. Two different chemical strategies were employed to form RLP-PEG hydrogels: one utilized a Michael-type addition reaction between the thiols of cysteine residues present within the RLP and vinyl sulfone moieties functionalized on a multi-arm PEG macromer; the second system cross-links a norbornene-functionalized RLP with a thiol-functionalized multi-arm PEG macromer via a photoinitiated thiol-ene step polymerization. Oscillatory rheology and tensile testing confirmed the formation of elastic, resilient hydrogels in the RLP-PEG system cross-linked via Michael-type addition. These hydrogels supported the encapsulation and culture of both human aortic adventitial fibroblasts and human mesenchymal stem cells. Additionally, these RLP-PEG hydrogels exhibited phase separation behavior during cross-linking that led to the formation of a heterogeneous microstructure. Degradation could be triggered through incubation with matrix metalloproteinase. Photocross-linking was conferred to RLPs through the successful conjugation of norbornene acid to the protein. Oscillatory rheology characterized the gelation and subsequent mechanical properties of the photoreactive RLP-PEG hydrogels while the cytocompatibility was confirmed via the successful encapsulation and culture of human mesenchymal stem cells. Both strategies demonstrate the utility of hybrid materials that combine biosynthetic proteins with synthetic polymers. As resilient and cytocompatible materials, RLP-PEG hybrid hydrogels offer an exciting strategy towards the development of biomimetic tissue engineering scaffolds for mechanically-demanding applications.

Nuclear mRNA Surveillance Mechanisms: Function and Links to Human Disease.

PubMed

Singh, Pragyan; Saha, Upasana; Paira, Sunirmal; Das, Biswadip

2018-05-11

Production of export-competent mRNAs involves transcription and a series of dynamic processing and modification events of pre-messenger RNAs in the nucleus. Mutations in the genes encoding the transcription and mRNP processing machinery and the complexities involved in the biogenesis events lead to the formation of aberrant messages. These faulty transcripts are promptly eliminated by the nuclear RNA exosome and its cofactors to safeguard the cells and organisms from genetic catastrophe. Mutations in the components of the core nuclear exosome and its cofactors lead to the tissue-specific dysfunction of exosomal activities, which are linked to diverse human diseases and disorders. In this article, we examine the structure and function of both the yeast and human RNA exosome complex and its cofactors, discuss the nature of the various altered amino acid residues implicated in these diseases with the speculative mechanisms of the mutation-induced disorders and project the frontier and prospective avenues of the future research in this field. Copyright © 2018 Elsevier Ltd. All rights reserved.

Mind the gap: implementation challenges break the link between HIV/AIDS research and practice.

PubMed

MacCarthy, Sarah; Reisner, Sari; Hoffmann, Michael; Perez-Brumer, Amaya; Silva-Santisteban, Alfonso; Nunn, Amy; Bastos, Leonardo; Vasconcellos, Mauricio Teixeira Leite de; Kerr, Ligia; Bastos, Francisco Inácio; Dourado, Inês

2016-11-03

Sampling strategies such as respondent-driven sampling (RDS) and time-location sampling (TLS) offer unique opportunities to access key populations such as men who have sex with men (MSM) and transgender women. Limited work has assessed implementation challenges of these methods. Overcoming implementation challenges can improve research quality and increase uptake of HIV services among key populations. Drawing from studies using RDS in Brazil and TLS in Peru, we summarize challenges encountered in the field and potential strategies to address them. In Brazil, study site selection, cash incentives, and seed selection challenged RDS implementation with MSM. In Peru, expansive geography, safety concerns, and time required for study participation complicated TLS implementation with MSM and transgender women. Formative research, meaningful participation of key populations across stages of research, and transparency in study design are needed to link HIV/AIDS research and practice. Addressing implementation challenges can close gaps in accessing services among those most burdened by the epidemic.

Architecture overview and data summary of a 5.4 km free-space laser communication experiment

NASA Astrophysics Data System (ADS)

Moores, John D.; Walther, Frederick G.; Greco, Joseph A.; Michael, Steven; Wilcox, William E., Jr.; Volpicelli, Alicia M.; Magliocco, Richard J.; Henion, Scott R.

2009-08-01

MIT Lincoln Laboratory designed and built two free-space laser communications terminals, and successfully demonstrated error-free communication between two ground sites separated by 5.4 km in September, 2008. The primary goal of this work was to emulate a low elevation angle air-to-ground link capable of supporting standard OTU1 (2.667 Gb/s) data formatting with standard client interfaces. Mitigation of turbulence-induced scintillation effects was accomplished through the use of multiple small-aperture receivers and novel encoding and interleaver hardware. Data from both the field and laboratory experiments were used to assess link performance as a function of system parameters such as transmitted power, degree of spatial diversity, and interleaver span, with and without forward error correction. This work was sponsored by the Department of Defense, RRCO DDR&E, under Air Force Contract FA8721-05-C-0002. Opinions, interpretations, conclusions and recommendations are those of the authors and are not necessarily endorsed by the United States Government.

Mind the gap: implementation challenges break the link between HIV/AIDS research and practice

PubMed Central

MacCarthy, Sarah; Reisner, Sari; Hoffmann, Michael; Perez-Brumer, Amaya; Silva-Santisteban, Alfonso; Nunn, Amy; Bastos, Leonardo; de Vasconcellos, Mauricio Teixeira Leite; Kerr, Ligia; Bastos, Francisco Inácio; Dourado, Inês

2018-01-01

Sampling strategies such as respondent-driven sampling (RDS) and time-location sampling (TLS) offer unique opportunities to access key populations such as men who have sex with men (MSM) and transgender women. Limited work has assessed implementation challenges of these methods. Overcoming implementation challenges can improve research quality and increase uptake of HIV services among key populations. Drawing from studies using RDS in Brazil and TLS in Peru, we summarize challenges encountered in the field and potential strategies to address them. In Brazil, study site selection, cash incentives, and seed selection challenged RDS implementation with MSM. In Peru, expansive geography, safety concerns, and time required for study participation complicated TLS implementation with MSM and transgender women. Formative research, meaningful participation of key populations across stages of research, and transparency in study design are needed to link HIV/AIDS research and practice. Addressing implementation challenges can close gaps in accessing services among those most burdened by the epidemic. PMID:27828609

Measures for interoperability of phenotypic data: minimum information requirements and formatting.

PubMed

Ćwiek-Kupczyńska, Hanna; Altmann, Thomas; Arend, Daniel; Arnaud, Elizabeth; Chen, Dijun; Cornut, Guillaume; Fiorani, Fabio; Frohmberg, Wojciech; Junker, Astrid; Klukas, Christian; Lange, Matthias; Mazurek, Cezary; Nafissi, Anahita; Neveu, Pascal; van Oeveren, Jan; Pommier, Cyril; Poorter, Hendrik; Rocca-Serra, Philippe; Sansone, Susanna-Assunta; Scholz, Uwe; van Schriek, Marco; Seren, Ümit; Usadel, Björn; Weise, Stephan; Kersey, Paul; Krajewski, Paweł

2016-01-01

Plant phenotypic data shrouds a wealth of information which, when accurately analysed and linked to other data types, brings to light the knowledge about the mechanisms of life. As phenotyping is a field of research comprising manifold, diverse and time-consuming experiments, the findings can be fostered by reusing and combining existing datasets. Their correct interpretation, and thus replicability, comparability and interoperability, is possible provided that the collected observations are equipped with an adequate set of metadata. So far there have been no common standards governing phenotypic data description, which hampered data exchange and reuse. In this paper we propose the guidelines for proper handling of the information about plant phenotyping experiments, in terms of both the recommended content of the description and its formatting. We provide a document called "Minimum Information About a Plant Phenotyping Experiment", which specifies what information about each experiment should be given, and a Phenotyping Configuration for the ISA-Tab format, which allows to practically organise this information within a dataset. We provide examples of ISA-Tab-formatted phenotypic data, and a general description of a few systems where the recommendations have been implemented. Acceptance of the rules described in this paper by the plant phenotyping community will help to achieve findable, accessible, interoperable and reusable data.

DOE Office of Scientific and Technical Information (OSTI.GOV)

Gould, Benjamin; Greco, Aaron

White etching cracks (WECs) have been identified as a dominant mode of premature failure within wind turbine gearbox bearings. Though WECs have been reported in the field for over a decade, the conditions leading to WECs, and the process by which this failure culminates, are both highly debated. In previously published work, the generation of WECs on a benchtop scale was linked to sliding at the surface of the test sample, it was also postulated that the generation of WECs was dependent on the cumulative energy that had been applied to the sample over the entirety of the test. Inmore » this paper, a three ring on roller bench top test rig is used to systematically alter the cumulative energy that a sample experiences through changes in normal load, sliding, and run time, in an attempt to correlate cumulative energy with the formation of WECs. It was determined that, in the current test setup, the presence of WECs can be predicted by this energy criterion. The authors then used this information to study the process by which WECs initiate. Lastly, it was found that, under the current testing conditions, the formation of a dark etching microstructure precedes the formation of a crack, and a crack precedes the formation of white etching microstructure.« less

A field evaluation of data link flight information services for general aviation pilots

DOT National Transportation Integrated Search

1997-02-01

This report documents a field study of Data Link Flight Information Services : (FIS) designed for use by general aviation (GA) pilots. The Data Link FIS : package that was evaluated in this study included the Traffic Information : Service (TIS), Text...

Improved Differential Ion Mobility Separations Using Linked Scans of Carrier Gas Composition and Compensation Field

NASA Astrophysics Data System (ADS)

Santiago, Brandon G.; Harris, Rachel A.; Isenberg, Samantha L.; Ridgeway, Mark E.; Pilo, Alice L.; Kaplan, Desmond A.; Glish, Gary L.

2015-07-01

Differential ion mobility spectrometry (DIMS) separates ions based on differences in their mobilities in low and high electric fields. When coupled to mass spectrometric analyses, DIMS has the ability to improve signal-to-background by eliminating isobaric and isomeric compounds for analytes in complex mixtures. DIMS separation power, often measured by resolution and peak capacity, can be improved through increasing the fraction of helium in the nitrogen carrier gas. However, because the mobility of ions is higher in helium, a greater number of ions collide with the DIMS electrodes or housing, yielding losses in signal intensity. To take advantage of the benefits of helium addition on DIMS separations and reduce ion losses, linked scans were developed. In a linked scan the helium content of the carrier gas is reduced as the compensation field is increased. Linked scans were compared with conventional compensation field scans with constant helium content for the protein ubiquitin and a tryptic digest of bovine serum albumin (BSA). Linked scans yield better separation of ubiquitin charge states and enhanced peak capacities for the analysis of BSA compared with compensation field scans with constant helium carrier gas percentages. Linked scans also offer improved signal intensity retention in comparison to compensation field scans with constant helium percentages in the carrier gas.

Evidence for dimer formation by an amphiphilic heptapeptide that mediates chloride and carboxyfluorescein release from liposomes

PubMed Central

Pajewski, Robert; Ferdani, Riccardo; Pajewska, Jolanta; Djedovič, Natasha; Schlesinger, Paul H.; Gokel, George W.

2008-01-01

Heptapeptides having dioctadecyl, N-terminal hydrocarbon chains insert in phospholipid bilayer membranes and form pores through which at least chloride ions pass. Although amphiphilic, these compounds do not typically form vesicles themselves. They insert in the bilayers of phospholipid vesicles and mediate the release of carboxyfluorescein. Hill analysis indicates that at least two molecules of the amphiphile are involved in pore formation. In CD2Cl2, dimer formation is detected by NMR chemical shift changes. The anion release activity of individual anion transporters is increased by linking them covalently at the C-terminus or, even more, by linking them at the N-terminus. Evidence is presented that either linked molecule releases chloride from liposomes more effectively and rapidly than the individual transporter molecule at a comparable concentration. PMID:15703797

Link Adaptation for Mitigating Earth-To-Space Propagation Effects on the NASA SCaN Testbed

NASA Technical Reports Server (NTRS)

Kilcoyne, Deirdre K.; Headley, William C.; Leffke, Zach J.; Rowe, Sonya A.; Mortensen, Dale J.; Reinhart, Richard C.; McGwier, Robert W.

2016-01-01

In Earth-to-Space communications, well-known propagation effects such as path loss and atmospheric loss can lead to fluctuations in the strength of the communications link between a satellite and its ground station. Additionally, the typically unconsidered effect of shadowing due to the geometry of the satellite and its solar panels can also lead to link degradation. As a result of these anticipated channel impairments, NASA's communication links have been traditionally designed to handle the worst-case impact of these effects through high link margins and static, lower rate, modulation formats. The work presented in this paper aims to relax these constraints by providing an improved trade-off between data rate and link margin through utilizing link adaptation. More specifically, this work provides a simulation study on the propagation effects impacting NASA's SCaN Testbed flight software-defined radio (SDR) as well as proposes a link adaptation algorithm that varies the modulation format of a communications link as its signal-to-noise ratio fluctuates. Ultimately, the models developed in this work will be utilized to conduct real-time flight experiments on-board the NASA SCaN Testbed.

Observing the Birth and evolution of Galaxies - the ATCA-AKARI-ASTE/AzTEC deep South Ecliptic Pole Field

NASA Astrophysics Data System (ADS)

White, Glenn; Kohno, Kotaro; Matsuhara, Hideo; Matsuura, Shuji; Hanami, Hitoshi; Lee, Hyung Mok; Pearson, Chris; Takagi, Toshi; Serjeant, Stephen; Jeong, Woongseob; Oyabu, Shinki; Shirahata, Mai; Nakanishi, Kouichiro; Figueredo, Elysandra; Etxaluze, Mireya

2007-04-01

We propose deep 20 cm observations supporting the AKARI (3-160 micron)/ASTE/AzTEC (1.1 mm) SEP ultra deep ('Oyabu Field') survey of an extremely low cirrus region at the South Ecliptic Pole. Our combined IR/mm/Radio survey addresses the questions: How do protogalaxies and protospheroids form and evolve? How do AGN link with ULIRGs in their birth and evolution? What is the nature of the mm/submm extragalactic source population? We will address these by sampling the star formation history in the early universe to at least z~2. Compared to other Deep Surveys, a) AKARI multi-band IR measurements allow precision photo-z estimates of optically obscured objects, b) our multi-waveband contiguous area will mitigate effects of cosmic variance, c) the low cirrus noise at the SEP (< 0.08 MJy/sr) rivals that of the Lockman Hole "Astronomy's other ultra-deep 'cosmological window'", and d) our coverage of four FIR bands will characterise the far-IR dust emission hump of our starburst galaxies better than SPITZER's two MIPS bands allow. The ATCA data are crucial to galaxy identification, and determining the star formation rates and intrinsic luminosities through this unique Southern cosmological window.

The Application of Ultrasound in 3D Bio-Printing.

PubMed

Zhou, Yufeng

2016-05-05

Three-dimensional (3D) bioprinting is an emerging and promising technology in tissue engineering to construct tissues and organs for implantation. Alignment of self-assembly cell spheroids that are used as bioink could be very accurate after droplet ejection from bioprinter. Complex and heterogeneous tissue structures could be built using rapid additive manufacture technology and multiple cell lines. Effective vascularization in the engineered tissue samples is critical in any clinical application. In this review paper, the current technologies and processing steps (such as printing, preparation of bioink, cross-linking, tissue fusion and maturation) in 3D bio-printing are introduced, and their specifications are compared with each other. In addition, the application of ultrasound in this novel field is also introduced. Cells experience acoustic radiation force in ultrasound standing wave field (USWF) and then accumulate at the pressure node at low acoustic pressure. Formation of cell spheroids by this method is within minutes with uniform size and homogeneous cell distribution. Neovessel formation from USWF-induced endothelial cell spheroids is significant. Low-intensity ultrasound could enhance the proliferation and differentiation of stem cells. Its use is at low cost and compatible with current bioreactor. In summary, ultrasound application in 3D bio-printing may solve some challenges and enhance the outcomes.

Glycoprotein biosynthesis in animal cells grown in suspension culture. Assembly of lipid-linked saccharides and formation of protein-bound 'high-mannose' oligosaccharides.

PubMed Central

Bailey, D S; Burke, J; Sinclair, R; Mukherjee, B B

1981-01-01

Glycoprotein biosynthesis was studied with mouse L-cells grown in suspension culture. Glucose-deprived cells incorporated [3H]mannose into 'high-mannose' protein-bound oligosaccharides and a few relatively high-molecular-weight lipid-linked oligosaccharides. The latter were retained by DEAE-cellulose and turned over quite slowly during pulse--chase experiments. Increased heterogeneity in size of lipid-linked oligosaccharides developed during prolonged glucose deprivation. Sequential elongation of lipid-linked oligosaccharides was also observed, and conditions that prevented the assembly of the higher lipid-linked oligosaccharides also prevented the formation of the larger protein-bound 'high-mannose' oligosaccharides. In parallel experiments, [3H]mannose was incorporated into a total polyribosome fraction, suggesting that mannose residues were transferred co-translationally to nascent protein. Membrane preparations from these cells catalysed the assembly from UDP-N-acetyl-D-[6-3H]glucosamine and GDP-D-[U-14C]mannose of polyisoprenyl diphosphate derivatives whose oligosaccharide moieties were heterogeneous in size. Elongation of the N-acetyl-D-[6-3H]glucosamine-initiated glycolipids with mannose residues produced several higher lipid-linked oligosaccharides similar to those seen during glucose deprivation in vivo. Glucosylation of these mannose-containing oligosaccharides from UDP-D-[6-3H]glucose was restricted to those of a relatively high molecular weight. Protein-bound saccharides formed in vitro were mainly smaller in size than those assembled on the lipid acceptors. These results support the involvement of lipid-linked saccharides in the synthesis of asparagine-linked glycoproteins, but show both in vivo and in vitro that protein-bound 'high-mannose' oligosaccharide formation can occur independently of higher lipid-linked oligosaccharide synthesis. PMID:7306042

Applications of the LBA-ECO Metadata Warehouse

NASA Astrophysics Data System (ADS)

Wilcox, L.; Morrell, A.; Griffith, P. C.

2006-05-01

The LBA-ECO Project Office has developed a system to harvest and warehouse metadata resulting from the Large-Scale Biosphere Atmosphere Experiment in Amazonia. The harvested metadata is used to create dynamically generated reports, available at www.lbaeco.org, which facilitate access to LBA-ECO datasets. The reports are generated for specific controlled vocabulary terms (such as an investigation team or a geospatial region), and are cross-linked with one another via these terms. This approach creates a rich contextual framework enabling researchers to find datasets relevant to their research. It maximizes data discovery by association and provides a greater understanding of the scientific and social context of each dataset. For example, our website provides a profile (e.g. participants, abstract(s), study sites, and publications) for each LBA-ECO investigation. Linked from each profile is a list of associated registered dataset titles, each of which link to a dataset profile that describes the metadata in a user-friendly way. The dataset profiles are generated from the harvested metadata, and are cross-linked with associated reports via controlled vocabulary terms such as geospatial region. The region name appears on the dataset profile as a hyperlinked term. When researchers click on this link, they find a list of reports relevant to that region, including a list of dataset titles associated with that region. Each dataset title in this list is hyperlinked to its corresponding dataset profile. Moreover, each dataset profile contains hyperlinks to each associated data file at its home data repository and to publications that have used the dataset. We also use the harvested metadata in administrative applications to assist quality assurance efforts. These include processes to check for broken hyperlinks to data files, automated emails that inform our administrators when critical metadata fields are updated, dynamically generated reports of metadata records that link to datasets with questionable file formats, and dynamically generated region/site coordinate quality assurance reports. These applications are as important as those that facilitate access to information because they help ensure a high standard of quality for the information. This presentation will discuss reports currently in use, provide a technical overview of the system, and discuss plans to extend this system to harvest metadata resulting from the North American Carbon Program by drawing on datasets in many different formats, residing in many thematic data centers and also distributed among hundreds of investigators.

Linking academic social environments, ego-identity formation, ego virtues, and academic success.

PubMed

Good, Marie; Adams, Gerald R

2008-01-01

This study used Structural Equation Modeling to test an Eriksonian conceptual model linking academic social environments (relationships with faculty and fellow students), ego-identity formation, ego virtues, and academic success. Participants included 765 first-year students at a university in southern Ontario, Canada. Results indicated that supportive relationships with faculty was directly related to higher average grades and perceived academic ability, whereas positive relationships with fellow students was indirectly related to academic success through ego virtues. Positive ego-identity formation (identity achievement) was also indirectly related to academic success through ego virtues.

Correlation of Thermal Stability and Structural Distortion of DNA Interstrand Cross-Links Produced from Oxidized Abasic Sites with Their Selective Formation and Repair.

PubMed

Ghosh, Souradyuti; Greenberg, Marc M

2015-10-13

C4'-oxidized (C4-AP) and C5'-oxidized abasic sites (DOB) that are produced following abstraction of a hydrogen atom from the DNA backbone reversibly form cross-links selectively with dA opposite a 3'-adjacent nucleotide, despite the comparable proximity of an opposing dA. A previous report on UvrABC incision of DNA substrates containing stabilized analogues of the ICLs derived from C4-AP and DOB also indicated that the latter is repaired more readily by nucleotide excision repair [Ghosh, S., and Greenberg, M. M. (2014) Biochemistry 53, 5958-5965]. The source for selective cross-link formation was probed by comparing the reactivity of ICL analogues of C4-AP and DOB that mimic the preferred and disfavored cross-links with that of reagents that indirectly detect distortion by reacting with the nucleobases. The disfavored C4-AP and DOB analogues were each more reactive than the corresponding preferred cross-link substrates, suggesting that the latter are more stable, which is consistent with selective ICL formation. In addition, the preferred DOB analogue is more reactive than the respective C4-AP ICL, which is consistent with its more efficient incision by UvrABC. The conclusions drawn from the chemical probing experiments are corroborated by UV melting studies. The preferred ICLs exhibit melting temperatures higher than those of the corresponding disfavored isomers. These studies suggest that oxidized abasic sites form reversible interstrand cross-links with dA opposite the 3'-adjacent thymidine because these products are more stable and the thermodynamic preference is reflected in the transition states for their formation.

A flight test facility design for examining digital information transfer

NASA Technical Reports Server (NTRS)

Knox, Charles E.

1990-01-01

Information is given in viewgraph form on a flight test facility design for examining digital information transfer. Information is given on aircraft/ground exchange, data link research activities, data link display format, a data link flight test, and the flight test setup.

Design and development of linked data from the National Map

USGS Publications Warehouse

Usery, E. Lynn; Varanka, Dalia E.

2012-01-01

The development of linked data on the World-Wide Web provides the opportunity for the U.S. Geological Survey (USGS) to supply its extensive volumes of geospatial data, information, and knowledge in a machine interpretable form and reach users and applications that heretofore have been unavailable. To pilot a process to take advantage of this opportunity, the USGS is developing an ontology for The National Map and converting selected data from nine research test areas to a Semantic Web format to support machine processing and linked data access. In a case study, the USGS has developed initial methods for legacy vector and raster formatted geometry, attributes, and spatial relationships to be accessed in a linked data environment maintaining the capability to generate graphic or image output from semantic queries. The description of an initial USGS approach to developing ontology, linked data, and initial query capability from The National Map databases is presented.

Quantum correlations and violation of the Bell inequality induced by an external field in a two-photon radiative cascade

DOE Office of Scientific and Technical Information (OSTI.GOV)

Yuan Luqi; Das, Sumanta

2011-06-15

We study the polarization-dependent second-order correlation of a pair of photons emitted in a four-level radiative cascade driven by an external field. It is found that the quantum correlations of the emitted photons, degraded by the energy splitting of the intermediate levels in the radiative cascade, can be efficiently revived by a far-detuned external field. The physics of this revival is linked to an induced Stark shift and the formation of dressed states in the system by the nonresonant external field. Furthermore, we investigated the competition between the effect of the coherent external field and incoherent dephasing of the intermediatemore » levels. We find that the degradation of quantum correlations due to the incoherent dephasing can be contained for small dephasing with the external field. We also studied the nonlocality of the correlations by evaluating the Bell inequality in the linear polarization basis for the radiative cascade. We find that the Bell parameter decreases rapidly with increase in the intermediate-level energy splitting or incoherent dephasing rate to the extent that there is no violation. However, the presence of an external field leads to control over the degrading mechanisms and preservation of nonlocal correlation among the photons. This in turn can induce a violation of Bell's inequality in the radiative cascade for arbitrary intermediate-level splitting and small incoherent dephasing.« less

Local field potentials and border ownership: A conjecture about computation in visual cortex.

PubMed

Zucker, Steven W

2012-01-01

Border ownership is an intermediate-level visual task: it must integrate (upward flowing) image information about edges with (downward flowing) shape information. This highlights the familiar local-to-global aspect of border formation (linking of edge elements to form contours) with the much less studied global-to-local aspect (which edge elements form part of the same shape). To address this task we show how to incorporate certain high-level notions of distance and geometric arrangement into a form that can influence image-based edge information. The center of the argument is a reaction-diffusion equation that reveals how (global) aspects of the distance map (that is, shape) can be "read out" locally, suggesting a solution to the border ownership problem. Since the reaction-diffusion equation defines a field, a possible information processing role for the local field potential can be defined. We argue that such fields also underlie the Gestalt notion of closure, especially when it is refined using modern experimental techniques. An important implication of this theoretical argument is that, if true, then network modeling must be extended to include the substrate surrounding spiking neurons, including glia. Copyright © 2012 Elsevier Ltd. All rights reserved.

Impact of Short-Range Forces on Defect Production from High-Energy Collisions

DOE PAGES

Stoller, R. E.; Tamm, A.; Béland, L. K.; ...

2016-04-25

Primary radiation damage formation in solid materials typically involves collisions between atoms that have up to a few hundred keV of kinetic energy. The distance between two colliding atoms can approach 0.05 nm during these collisions. At such small atomic separations, force fields fitted to equilibrium properties tend to significantly underestimate the potential energy of the colliding dimer. To enable molecular dynamics simulations of high-energy collisions, it is common practice to use a screened Coulomb force field to describe the interactions and to smoothly join this to the equilibrium force field at a suitable interatomic spacing. But, there is nomore » accepted standard method for choosing the parameters used in the joining process, and our results prove that defect production is sensitive to how the force fields are linked. A new procedure is presented that involves the use of ab initio calculations to determine the magnitude and spatial dependence of the pair interactions at intermediate distances, along with systematic criteria for choosing the joining parameters. Results are presented for the case of nickel, which demonstrate the use and validity of the procedure.« less

Size effect on the magnetic properties of antiferromagnetic La0.2Ca0.8MnO3 nanoparticles

NASA Astrophysics Data System (ADS)

Markovich, V.; Fita, I.; Wisniewski, A.; Mogilyansky, D.; Puzniak, R.; Titelman, L.; Martin, C.; Gorodetsky, G.

2010-03-01

Magnetic properties of electron-doped La0.2Ca0.8MnO3 manganite nanoparticles with average particle size ranging from 15 to 37 nm, prepared by the glycine-nitrate method, have been investigated in temperature range 5-300 K and in magnetic fields up to 90 kOe. A monotonous enhancement of weak ferromagnetism linked to the reduction in the particle size was observed for all nanoparticles. Magnetic hysteresis loops also indicate size-dependent exchange bias effect displayed by horizontal and vertical shifts in field-cooled processes. The magnetization data reveal two ferromagnetic components: first one appears at T˜200K and may be attributed to surface magnetization and second one appears as a result of spin canting of antiferromagnetic core or is developed at some interfaces inside nanoparticles. Time evolution of magnetization recorded in magnetic fields after the field cooling to low temperatures exhibits a very noisy behavior that may be caused by formation of collective state of nanoparticles with no clear tendency to reach equilibrium state. Magnetic properties of the nanoparticle samples are compared with those of the bulk La0.2Ca0.8MnO3 .

Polyproline as a Minimal Antifreeze Protein Mimic That Enhances the Cryopreservation of Cell Monolayers

PubMed Central

Graham, Ben; Bailey, Trisha L.; Healey, Joseph R. J.; Marcellini, Moreno; Deville, Sylvain

2017-01-01

Abstract Tissue engineering, gene therapy, drug screening, and emerging regenerative medicine therapies are fundamentally reliant on high‐quality adherent cell culture, but current methods to cryopreserve cells in this format can give low cell yields and require large volumes of solvent “antifreezes”. Herein, we report polyproline as a minimum (bio)synthetic mimic of antifreeze proteins that is accessible by solution, solid‐phase, and recombinant methods. We demonstrate that polyproline has ice recrystallisation inhibition activity linked to its amphipathic helix and that it enhances the DMSO cryopreservation of adherent cell lines. Polyproline may be a versatile additive in the emerging field of macromolecular cryoprotectants. PMID:29044869

Polyproline as a Minimal Antifreeze Protein Mimic That Enhances the Cryopreservation of Cell Monolayers.

PubMed

Graham, Ben; Bailey, Trisha L; Healey, Joseph R J; Marcellini, Moreno; Deville, Sylvain; Gibson, Matthew I

2017-12-11

Tissue engineering, gene therapy, drug screening, and emerging regenerative medicine therapies are fundamentally reliant on high-quality adherent cell culture, but current methods to cryopreserve cells in this format can give low cell yields and require large volumes of solvent "antifreezes". Herein, we report polyproline as a minimum (bio)synthetic mimic of antifreeze proteins that is accessible by solution, solid-phase, and recombinant methods. We demonstrate that polyproline has ice recrystallisation inhibition activity linked to its amphipathic helix and that it enhances the DMSO cryopreservation of adherent cell lines. Polyproline may be a versatile additive in the emerging field of macromolecular cryoprotectants. © 2017 Wiley-VCH Verlag GmbH & Co. KGaA, Weinheim.

Performance Benefits with Scene-Linked HUD Symbology: An Attentional Phenomenon?

NASA Technical Reports Server (NTRS)

Levy, Jonathan L.; Foyle, David C.; McCann, Robert S.; Null, Cynthia H. (Technical Monitor)

1999-01-01

Previous research has shown that in a simulated flight task, navigating a path defined by ground markers while maintaining a target altitude is more accurate when an altitude indicator appears in a virtual "scenelinked" format (projected symbology moving as if it were part of the out-the-window environment) compared to the fixed-location, superimposed format found on present-day HUDs (Foyle, McCann & Shelden, 1995). One explanation of the scene-linked performance advantage is that attention can be divided between scene-linked symbology and the outside world more efficiently than between standard (fixed-position) HUD symbology and the outside world. The present study tested two alternative explanations by manipulating the location of the scene-linked HUD symbology relative to the ground path markers. Scene-linked symbology yielded better ground path-following performance than standard fixed-location superimposed symbology regardless of whether the scene-linked symbology appeared directly along the ground path or at various distances off the path. The results support the explanation that the performance benefits found with scene-linked symbology are attentional.

Visualization of geologic stress perturbations using Mohr diagrams.

PubMed

Crossno, Patricia; Rogers, David H; Brannon, Rebecca M; Coblentz, David; Fredrich, Joanne T

2005-01-01

Huge salt formations, trapping large untapped oil and gas reservoirs, lie in the deepwater region of the Gulf of Mexico. Drilling in this region is high-risk and drilling failures have led to well abandonments, with each costing tens of millions of dollars. Salt tectonics plays a central role in these failures. To explore the geomechanical interactions between salt and the surrounding sand and shale formations, scientists have simulated the stresses in and around salt diapirs in the Gulf of Mexico using nonlinear finite element geomechanical modeling. In this paper, we describe novel techniques developed to visualize the simulated subsurface stress field. We present an adaptation of the Mohr diagram, a traditional paper-and-pencil graphical method long used by the material mechanics community for estimating coordinate transformations for stress tensors, as a new tensor glyph for dynamically exploring tensor variables within three-dimensional finite element models. This interactive glyph can be used as either a probe or a filter through brushing and linking.

NONLINEAR COLOR-METALLICITY RELATIONS OF GLOBULAR CLUSTERS. III. ON THE DISCREPANCY IN METALLICITY BETWEEN GLOBULAR CLUSTER SYSTEMS AND THEIR PARENT ELLIPTICAL GALAXIES

DOE Office of Scientific and Technical Information (OSTI.GOV)

Yoon, Suk-Jin; Lee, Sang-Yoon; Cho, Jaeil

2011-12-20

One of the conundrums in extragalactic astronomy is the discrepancy in observed metallicity distribution functions (MDFs) between the two prime stellar components of early-type galaxies-globular clusters (GCs) and halo field stars. This is generally taken as evidence of highly decoupled evolutionary histories between GC systems and their parent galaxies. Here we show, however, that new developments in linking the observed GC colors to their intrinsic metallicities suggest nonlinear color-to-metallicity conversions, which translate observed color distributions into strongly peaked, unimodal MDFs with broad metal-poor tails. Remarkably, the inferred GC MDFs are similar to the MDFs of resolved field stars in nearbymore » elliptical galaxies and those produced by chemical evolution models of galaxies. The GC MDF shape, characterized by a sharp peak with a metal-poor tail, indicates a virtually continuous chemical enrichment with a relatively short timescale. The characteristic shape emerges across three orders of magnitude in the host galaxy mass, suggesting a universal process of chemical enrichment among various GC systems. Given that GCs are bluer than field stars within the same galaxy, it is plausible that the chemical enrichment processes of GCs ceased somewhat earlier than that of the field stellar population, and if so, GCs preferentially trace the major, vigorous mode of star formation events in galactic formation. We further suggest a possible systematic age difference among GC systems, in that the GC systems in more luminous galaxies are older. This is consistent with the downsizing paradigm whereby stars of brighter galaxies, on average, formed earlier than those of dimmer galaxies; this additionally supports the similar nature shared by GCs and field stars. Although the sample used in this study (the Hubble Space Telescope Advanced Camera for Surveys/Wide Field Channel, WFPC2, and WFC3 photometry for the GC systems in the Virgo galaxy cluster) confines our discussion to R {approx}< R{sub e} for giant ellipticals and {approx}<10 R{sub e} for normal ellipticals, our findings suggest that GC systems and their parent galaxies have shared a more common origin than previously thought, and hence greatly simplify theories of galaxy formation.« less

Project Final Report: Linking Plant Stress, Biogenic SOA, and CCN Production - A New Feedback in the Climate System?

DOE Office of Scientific and Technical Information (OSTI.GOV)

VanReken, Timothy; Balasingam, Muhunthan

2017-05-01

This project worked toward understanding the role of variable biogenic emissions in the formation of secondary organic aerosol (SOA), and in turn the potential for this aerosol to affect cloud droplet formation. It was premised on the idea that a changing climate could impose biogenic and abiogenic stresses on plants that would affect the emissions of volatile organic compounds (VOCs). The transformation of these VOCs to SOA and cloud condensation nuclei (CCN) implied the possibility of a feedback mechanism within the biosphere/atmosphere/climate system. The project’s activities centered on laboratory experiments to study the effects of stresses on plants and plant-derivedmore » material under controlled conditions, observing both the VOC emissions and the aerosol that formed from the oxidation of those VOCs. The results highlighted the potentially important contributions of stress and decomposition mechanisms to biogenic SOA formation. Related field measurements elucidated the conditions when these factors could be important in the ambient environment. The project also revealed repeated the complexity of the stress/VOC emission relationship, and the difficulty in expressing these relationships in a comprehensive manner.« less

Microkinetic modeling of the autoxidative curing of an alkyd and oil-based paint model system

NASA Astrophysics Data System (ADS)

Oakley, Lindsay H.; Casadio, Francesca; Shull, Kenneth R.; Broadbelt, Linda J.

2015-11-01

Elucidating the curing and aging mechanisms of alkyd and other oil-based paints is valuable for the fields of conservation and bio-based coatings. Recent research has demonstrated the limitations of artificial aging in predicting the actual properties of paints that are hundreds of years old. Kinetic modeling offers pathways to develop a realistic and dynamic description of the composition of these oil-based paint coatings and facilitates the exploration of the effects of various environmental conditions on their long-term chemical stability. This work presents the construction of a kinetic Monte Carlo framework from elementary steps for the cobalt-catalyzed autoxidative curing of an ethyl linoleate model system up to the formation of single cross-links. Kinetic correlations for reaction families of similar chemistry are employed to reduce the number of parameters required to calculate rate constants in Arrhenius form. The model, developed from mechanisms proposed in the literature, shows good agreement with experiment for the formation of primary products in the early stages of curing. The model has also revealed that the mechanisms proposed in the literature for the formation of secondary products, such as volatile aldehydes, are still not well established, and alternative routes are under evaluation.

Galactic cold cores. VII. Filament formation and evolution: Methods and observational constraints

NASA Astrophysics Data System (ADS)

Rivera-Ingraham, A.; Ristorcelli, I.; Juvela, M.; Montillaud, J.; Men'shchikov, A.; Malinen, J.; Pelkonen, V.-M.; Marston, A.; Martin, P. G.; Pagani, L.; Paladini, R.; Paradis, D.; Ysard, N.; Ward-Thompson, D.; Bernard, J.-P.; Marshall, D. J.; Montier, L.; Tóth, L. V.

2016-06-01

Context. The association of filaments with protostellar objects has made these structures a priority target in star formation studies. However, little is known about the link between filament properties and their local environment. Aims: The datasets from the Herschel Galactic Cold cores key programme allow for a statistical study of filaments with a wide range of intrinsic and environmental characteristics. Characterisation of this sample can therefore be used to identify key physical parameters and quantify the role of the environment in the formation of supercritical filaments. These results are necessary to constrain theoretical models of filament formation and evolution. Methods: Filaments were extracted from fields at distance D< 500 pc with the getfilaments algorithm and characterised according to their column density profiles and intrinsic properties. Each profile was fitted with a beam-convolved Plummer-like function, and the filament structure was quantified based on the relative contributions from the filament "core", represented by a Gaussian, and "wing" component, dominated by the power-law behaviour of the Plummer-like function. These filament parameters were examined for populations associated with different background levels. Results: Filaments increase their core (Mline,core) and wing (Mline,wing) contributions while increasing their total linear mass density (Mline,tot). Both components appear to be linked to the local environment, with filaments in higher backgrounds having systematically more massive Mline,core and Mline,wing. This dependence on the environment supports an accretion-based model of filament evolution in the local neighbourhood (D ≤ 500 pc). Structures located in the highest backgrounds develop the highest central AV, Mline,core, and Mline,wing as Mline,tot increases with time, favoured by the local availability of material and the enhanced gravitational potential. Our results indicate that filaments acquiring a significantly massive central region with Mline,core≳Mcrit/2 may become supercritical and form stars. This translates into a need for filaments to become at least moderately self-gravitating to undergo localised star formation or become star-forming filaments. Herschel is an ESA space observatory with science instruments provided by European-led Principal Investigator consortia and with important participation from NASA.

Does Linking Mixed-Format Tests Using a Multiple-Choice Anchor Produce Comparable Results for Male and Female Subgroups? Research Report. ETS RR-11-44

ERIC Educational Resources Information Center

Kim, Sooyeon; Walker, Michael E.

2011-01-01

This study examines the use of subpopulation invariance indices to evaluate the appropriateness of using a multiple-choice (MC) item anchor in mixed-format tests, which include both MC and constructed-response (CR) items. Linking functions were derived in the nonequivalent groups with anchor test (NEAT) design using an MC-only anchor set for 4…

Feedback as Dialogue: Exploring the Links between Formative Assessment and Social Software in Distance Learning

ERIC Educational Resources Information Center

Hatzipanagos, Stylianos; Warburton, Steven

2009-01-01

The paper explores the relationship between formative assessment and social software. Formative assessment practices though beneficial for student learning become marginalised and constrained in open and distance learning environments in higher education. Feedback is a key factor in formative assessment and learners can benefit from the deployment…

Effect of angular momentum alignment and strong magnetic fields on the formation of protostellar discs

NASA Astrophysics Data System (ADS)

Gray, William J.; McKee, Christopher F.; Klein, Richard I.

2018-01-01

Star-forming molecular clouds are observed to be both highly magnetized and turbulent. Consequently, the formation of protostellar discs is largely dependent on the complex interaction between gravity, magnetic fields, and turbulence. Studies of non-turbulent protostellar disc formation with realistic magnetic fields have shown that these fields are efficient in removing angular momentum from the forming discs, preventing their formation. However, once turbulence is included, discs can form in even highly magnetized clouds, although the precise mechanism remains uncertain. Here, we present several high-resolution simulations of turbulent, realistically magnetized, high-mass molecular clouds with both aligned and random turbulence to study the role that turbulence, misalignment, and magnetic fields have on the formation of protostellar discs. We find that when the turbulence is artificially aligned so that the angular momentum is parallel to the initial uniform field, no rotationally supported discs are formed, regardless of the initial turbulent energy. We conclude that turbulence and the associated misalignment between the angular momentum and the magnetic field are crucial in the formation of protostellar discs in the presence of realistic magnetic fields.

Non-Infectious Meningitis

MedlinePlus

... Links Vaccine Schedules Preteen & Teen Vaccines Meningococcal Disease Sepsis Non-Infectious Meningitis Recommend on Facebook Tweet Share ... Links Vaccine Schedules Preteen & Teen Vaccines Meningococcal Disease Sepsis File Formats Help: How do I view different ...

USGS Spectral Library Version 7

USGS Publications Warehouse

Kokaly, Raymond F.; Clark, Roger N.; Swayze, Gregg A.; Livo, K. Eric; Hoefen, Todd M.; Pearson, Neil C.; Wise, Richard A.; Benzel, William M.; Lowers, Heather A.; Driscoll, Rhonda L.; Klein, Anna J.

2017-04-10

We have assembled a library of spectra measured with laboratory, field, and airborne spectrometers. The instruments used cover wavelengths from the ultraviolet to the far infrared (0.2 to 200 microns [μm]). Laboratory samples of specific minerals, plants, chemical compounds, and manmade materials were measured. In many cases, samples were purified, so that unique spectral features of a material can be related to its chemical structure. These spectro-chemical links are important for interpreting remotely sensed data collected in the field or from an aircraft or spacecraft. This library also contains physically constructed as well as mathematically computed mixtures. Four different spectrometer types were used to measure spectra in the library: (1) Beckman™ 5270 covering the spectral range 0.2 to 3 µm, (2) standard, high resolution (hi-res), and high-resolution Next Generation (hi-resNG) models of Analytical Spectral Devices (ASD) field portable spectrometers covering the range from 0.35 to 2.5 µm, (3) Nicolet™ Fourier Transform Infra-Red (FTIR) interferometer spectrometers covering the range from about 1.12 to 216 µm, and (4) the NASA Airborne Visible/Infra-Red Imaging Spectrometer AVIRIS, covering the range 0.37 to 2.5 µm. Measurements of rocks, soils, and natural mixtures of minerals were made in laboratory and field settings. Spectra of plant components and vegetation plots, comprising many plant types and species with varying backgrounds, are also in this library. Measurements by airborne spectrometers are included for forested vegetation plots, in which the trees are too tall for measurement by a field spectrometer. This report describes the instruments used, the organization of materials into chapters, metadata descriptions of spectra and samples, and possible artifacts in the spectral measurements. To facilitate greater application of the spectra, the library has also been convolved to selected spectrometer and imaging spectrometers sampling and bandpasses, and resampled to selected broadband multispectral sensors. The native file format of the library is the SPECtrum Processing Routines (SPECPR) data format. This report describes how to access freely available software to read the SPECPR format. To facilitate broader access to the library, we produced generic formats of the spectra and metadata in text files. The library is provided on digital media and online at https://speclab.cr.usgs.gov/spectral-lib.html. A long-term archive of these data are stored on the USGS ScienceBase data server (https://dx.doi.org/10.5066/F7RR1WDJ).

HTLV-1 Tax Induces Formation of the Active Macromolecular IKK Complex by Generating Lys63- and Met1-Linked Hybrid Polyubiquitin Chains.

PubMed

Shibata, Yuri; Tokunaga, Fuminori; Goto, Eiji; Komatsu, Ginga; Gohda, Jin; Saeki, Yasushi; Tanaka, Keiji; Takahashi, Hirotaka; Sawasaki, Tatsuya; Inoue, Satoshi; Oshiumi, Hiroyuki; Seya, Tsukasa; Nakano, Hiroyasu; Tanaka, Yuetsu; Iwai, Kazuhiro; Inoue, Jun-Ichiro

2017-01-01

The Tax protein of human T-cell leukemia virus type 1 (HTLV-1) is crucial for the development of adult T-cell leukemia (ATL), a highly malignant CD4+ T cell neoplasm. Among the multiple aberrant Tax-induced effects on cellular processes, persistent activation of transcription factor NF-κB, which is activated only transiently upon physiological stimulation, is essential for leukemogenesis. We and others have shown that Tax induces activation of the IκB kinase (IKK) complex, which is a critical step in NF-κB activation, by generating Lys63-linked polyubiquitin chains. However, the molecular mechanism underlying Tax-induced IKK activation is controversial and not fully understood. Here, we demonstrate that Tax recruits linear (Met1-linked) ubiquitin chain assembly complex (LUBAC) to the IKK complex and that Tax fails to induce IKK activation in cells that lack LUBAC activity. Mass spectrometric analyses revealed that both Lys63-linked and Met1-linked polyubiquitin chains are associated with the IKK complex. Furthermore, treatment of the IKK-associated polyubiquitin chains with Met1-linked-chain-specific deubiquitinase (OTULIN) resulted in the reduction of high molecular weight polyubiquitin chains and the generation of short Lys63-linked ubiquitin chains, indicating that Tax can induce the generation of Lys63- and Met1-linked hybrid polyubiquitin chains. We also demonstrate that Tax induces formation of the active macromolecular IKK complex and that the blocking of Tax-induced polyubiquitin chain synthesis inhibited formation of the macromolecular complex. Taken together, these results lead us to propose a novel model in which the hybrid-chain-dependent oligomerization of the IKK complex triggered by Tax leads to trans-autophosphorylation-mediated IKK activation.

HTLV-1 Tax Induces Formation of the Active Macromolecular IKK Complex by Generating Lys63- and Met1-Linked Hybrid Polyubiquitin Chains

PubMed Central

Tokunaga, Fuminori; Goto, Eiji; Komatsu, Ginga; Saeki, Yasushi; Tanaka, Keiji; Takahashi, Hirotaka; Sawasaki, Tatsuya; Inoue, Satoshi; Oshiumi, Hiroyuki; Seya, Tsukasa; Nakano, Hiroyasu; Tanaka, Yuetsu; Iwai, Kazuhiro

2017-01-01

The Tax protein of human T-cell leukemia virus type 1 (HTLV-1) is crucial for the development of adult T-cell leukemia (ATL), a highly malignant CD4+ T cell neoplasm. Among the multiple aberrant Tax-induced effects on cellular processes, persistent activation of transcription factor NF-κB, which is activated only transiently upon physiological stimulation, is essential for leukemogenesis. We and others have shown that Tax induces activation of the IκB kinase (IKK) complex, which is a critical step in NF-κB activation, by generating Lys63-linked polyubiquitin chains. However, the molecular mechanism underlying Tax-induced IKK activation is controversial and not fully understood. Here, we demonstrate that Tax recruits linear (Met1-linked) ubiquitin chain assembly complex (LUBAC) to the IKK complex and that Tax fails to induce IKK activation in cells that lack LUBAC activity. Mass spectrometric analyses revealed that both Lys63-linked and Met1-linked polyubiquitin chains are associated with the IKK complex. Furthermore, treatment of the IKK-associated polyubiquitin chains with Met1-linked-chain-specific deubiquitinase (OTULIN) resulted in the reduction of high molecular weight polyubiquitin chains and the generation of short Lys63-linked ubiquitin chains, indicating that Tax can induce the generation of Lys63- and Met1-linked hybrid polyubiquitin chains. We also demonstrate that Tax induces formation of the active macromolecular IKK complex and that the blocking of Tax-induced polyubiquitin chain synthesis inhibited formation of the macromolecular complex. Taken together, these results lead us to propose a novel model in which the hybrid-chain-dependent oligomerization of the IKK complex triggered by Tax leads to trans-autophosphorylation-mediated IKK activation. PMID:28103322

About Haemophilus influenzae Disease

MedlinePlus

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THE IMPRINT OF EXOPLANET FORMATION HISTORY ON OBSERVABLE PRESENT-DAY SPECTRA OF HOT JUPITERS

DOE Office of Scientific and Technical Information (OSTI.GOV)

Mordasini, C.; Van Boekel, R.; Mollière, P.

The composition of a planet’s atmosphere is determined by its formation, evolution, and present-day insolation. A planet’s spectrum therefore may hold clues on its origins. We present a “chain” of models, linking the formation of a planet to its observable present-day spectrum. The chain links include (1) the planet’s formation and migration, (2) its long-term thermodynamic evolution, (3) a variety of disk chemistry models, (4) a non-gray atmospheric model, and (5) a radiometric model to obtain simulated spectroscopic observations with James Webb Space Telescope and ARIEL. In our standard chemistry model the inner disk is depleted in refractory carbon asmore » in the Solar System and in white dwarfs polluted by extrasolar planetesimals. Our main findings are: (1) envelope enrichment by planetesimal impacts during formation dominates the final planetary atmospheric composition of hot Jupiters. We investigate two, under this finding, prototypical formation pathways: a formation inside or outside the water iceline, called “dry” and “wet” planets, respectively. (2) Both the “dry” and “wet” planets are oxygen-rich (C/O < 1) due to the oxygen-rich nature of the solid building blocks. The “dry” planet’s C/O ratio is <0.2 for standard carbon depletion, while the “wet” planet has typical C/O values between 0.1 and 0.5 depending mainly on the clathrate formation efficiency. Only non-standard disk chemistries without carbon depletion lead to carbon-rich C/O ratios >1 for the “dry” planet. (3) While we consistently find C/O ratios <1, they still vary significantly. To link a formation history to a specific C/O, a better understanding of the disk chemistry is thus needed.« less

Biomechanical Comparison of Standard and Linked Single-Row Rotator Cuff Repairs in a Human Cadaver Model.

PubMed

Meisel, Adam F; Henninger, Heath B; Barber, F Alan; Getelman, Mark H

2017-05-01

The purpose of this study was to evaluate the time zero cyclic and failure loading properties of a linked single-row rotator cuff repair compared with a standard simple suture single-row repair using triple-loaded suture anchors. Eighteen human cadaveric shoulders from 9 matched pairs were dissected, and full-thickness supraspinatus tears were created. The tendon cross-sectional area was recorded. In each pair, one side was repaired with a linked single-row construct and the other with a simple suture single-row construct, both using 2 triple-loaded suture anchors. After preloading, specimens were cycled to 1 MPa of effective stress at 1 Hz for 500 cycles, and gap formation was recorded with a digital video system. Samples were then loaded to failure, and modes of failure were recorded. There was no statistical difference in peak gap formation between the control and linked constructs (3.6 ± 0.9 mm and 3.6 ± 1.2 mm, respectively; P = .697). Both constructs averaged below a 5-mm cyclic failure threshold. There was no statistical difference in ultimate load to failure between the control and linked repair (511.1 ± 139.0 N and 561.2 ± 131.8 N, respectively; P = .164), and both groups reached failure at loads similar to previous studies. Constructs failed predominantly via tissue tearing parallel to the medial suture line. The linked repair performed similarly to the simple single-row repair. Both constructs demonstrated high ultimate load to failure and good resistance to gap formation with cyclic loading, validating the time zero strength of both constructs in a human cadaveric model. The linked repair provided equivalent resistance to gap formation and failure loads compared with simple suture single-row repairs with triple-loaded suture anchors. This suggests that the linked repair is a simplified rip-stop configuration using the existing suture that may perform similarly to current rotator cuff repair techniques. Copyright © 2016 Arthroscopy Association of North America. Published by Elsevier Inc. All rights reserved.

A Novel MS-Cleavable Azo Cross-Linker for Peptide Structure Analysis by Free Radical Initiated Peptide Sequencing (FRIPS)

NASA Astrophysics Data System (ADS)

Iacobucci, Claudio; Hage, Christoph; Schäfer, Mathias; Sinz, Andrea

2017-10-01

The chemical cross-linking/mass spectrometry (MS) approach is a growing research field in structural proteomics that allows gaining insights into protein conformations. It relies on creating distance constraints between cross-linked amino acid side chains that can further be used to derive protein structures. Currently, the most urgent task for designing novel cross-linking principles is an unambiguous and automated assignment of the created cross-linked products. Here, we introduce the homobifunctional, amine-reactive, and water soluble cross-linker azobisimidoester (ABI) as a prototype of a novel class of cross-linkers. The ABI-linker possesses an innovative modular scaffold combining the benefits of collisional activation lability with open shell chemistry. This MS-cleavable cross-linker can be efficiently operated via free radical initiated peptide sequencing (FRIPS) in positive ionization mode. Our proof-of-principle study challenges the gas phase behavior of the ABI-linker for the three amino acids, lysine, leucine, and isoleucine, as well as the model peptide thymopentin. The isomeric amino acids leucine and isoleucine could be discriminated by their characteristic side chain fragments. Collisional activation experiments were conducted via positive electrospray ionization (ESI) on two Orbitrap mass spectrometers. The ABI-mediated formation of odd electron product ions in MS/MS and MS3 experiments was evaluated and compared with a previously described azo-based cross-linker. All cross-linked products were amenable to automated analysis by the MeroX software, underlining the future potential of the ABI-linker for structural proteomics studies. [Figure not available: see fulltext.

Types of Haemophilus influenzae Infections

MedlinePlus

... Links Global Hib Vaccination Hib Vaccination Meningitis Pneumonia Sepsis Types of Haemophilus influenzae Infections Recommend on Facebook ... Links Global Hib Vaccination Hib Vaccination Meningitis Pneumonia Sepsis File Formats Help: How do I view different ...

K6 linked polyubiquitylation of FADD by CHIP prevents death inducing signaling complex formation suppressing cell death.

PubMed

Seo, Jinho; Lee, Eun-Woo; Shin, Jihye; Seong, Daehyeon; Nam, Young Woo; Jeong, Manhyung; Lee, Seon-Hyeong; Lee, Cheolju; Song, Jaewhan

2018-05-23

Fas-associated death domain (FADD) is an adaptor protein recruiting complexes of caspase 8 to death ligand receptors to induce extrinsic apoptotic cell death in response to a TNF superfamily member. Although, formation of the complex of FADD and caspase 8 upon death stimuli has been studied in detail, posttranslational modifications fine-tuning these processes have yet to be identified. Here we revealed that K6-linked polyubiquitylation of FADD on lysines 149 and 153 mediated by C terminus HSC70-interacting protein (CHIP) plays an important role in preventing formation of the death inducing signaling complex (DISC), thus leading to the suppression of cell death. Cells depleted of CHIP showed higher sensitivity toward death ligands such as FasL and TRAIL, leading to upregulation of DISC formation composed of a death receptor, FADD, and caspase 8. CHIP was able to bind to FADD, induce K6-linked polyubiquitylation of FADD, and suppress DISC formation. By mass spectrometry, lysines 149 and 153 of FADD were found to be responsible for CHIP-mediated FADD ubiquitylation. FADD mutated at these sites was capable of more potent cell death induction as compared with the wild type and was no longer suppressed by CHIP. On the other hand, CHIP deficient in E3 ligase activity was not capable of suppressing FADD function and of FADD ubiquitylation. CHIP depletion in ME-180 cells induced significant sensitization of these cells toward TRAIL in xenograft analyses. These results imply that K6-linked ubiquitylation of FADD by CHIP is a crucial checkpoint in cytokine-dependent extrinsic apoptosis.

Star & Planet Formation Studies and Opportunities with SOFIA

NASA Technical Reports Server (NTRS)

Smith, Kimberly Ennico

2018-01-01

Star formation, the most fundamental process in the universe, is linked to planet formation and thus to the origin and evolution of life. We have a general outline of how planets and stars form, yet unraveling the details of the physics and chemistry continues to challenge us. The infrared and submillimeter part of the spectrum hold the most promise for studying the beginnings of star formation. The observational landscape recently shaped by Spitzer, Herschel and ALMA, continues to challenge our current theories. SOFIA, the Stratospheric Observatory for Infrared Astronomy, equipped with state-of-the-art infrared instrumentation to a vantage point at 45,000 feet (13.7 kilometers) flight altitude that is above 99.9 percent of the Earth's water vapor, enables observations in the infrared through terahertz frequencies not possible from the ground. SOFIA is a community observatory, about to start its sixth annual observing cycle. My talk will focus on recent results in advancing star and planet formation processes using SOFIA's imaging and polarimetric capabilities, and the upcoming science enabled by the 3rd generation instrument High-Resolution Mid-Infrared Spectrometer (HIRMES) to be commissioned in 2019. I will show how mid-infrared imaging is used to test massive star formation theories, how far-infrared polarimetry on sub-parsec scales is directly testing the role of magnetic fields in molecular clouds, and how velocity-resolved high-resolution spectroscopy will push forward our understanding of proto-planetary disk science. I will also summarize upcoming opportunities with the SOFIA observatory. For the latest news about your flying observatory, see https://sofia.usra.edu/.

A binary link tracker for the BaBar level 1 trigger system

DOE Office of Scientific and Technical Information (OSTI.GOV)

Berenyi, A.; Chen, H.K.; Dao, K.

1999-08-01

The BaBar detector at PEP-II will operate in a high-luminosity e{sup +}e{sup {minus}} collider environment near the {Upsilon}(4S) resonance with the primary goal of studying CP violation in the B meson system. In this environment, typical physics events of interest involve multiple charged particles. These events are identified by counting these tracks in a fast first level (Level 1) trigger system, by reconstructing the tracks in real time. For this purpose, a Binary Link Tracker Module (BLTM) was designed and fabricated for the BaBar Level 1 Drift Chamber trigger system. The BLTM is responsible for linking track segments, constructed bymore » the Track Segment Finder Modules (TSFM), into complete tracks. A single BLTM module processes a 360 MBytes/s stream of segment hit data, corresponding to information from the entire Drift Chamber, and implements a fast and robust algorithm that tolerates high hit occupancies as well as local inefficiencies of the Drift Chamber. The algorithms and the necessary control logic of the BLTM were implemented in Field Programmable Gate Arrays (FPGAs), using the VHDL hardware description language. The finished 9U x 400 mm Euro-format board contains roughly 75,000 gates of programmable logic or about 10,000 lines of VHDL code synthesized into five FPGAs.« less

Haemophilus influenzae Disease (Including Hib) Symptoms

MedlinePlus

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About Mumps

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Autonomous Guidance Strategy for Spacecraft Formations and Reconfiguration Maneuvers

NASA Astrophysics Data System (ADS)

Wahl, Theodore P.

A guidance strategy for autonomous spacecraft formation reconfiguration maneuvers is presented. The guidance strategy is presented as an algorithm that solves the linked assignment and delivery problems. The assignment problem is the task of assigning the member spacecraft of the formation to their new positions in the desired formation geometry. The guidance algorithm uses an auction process (also called an "auction algorithm''), presented in the dissertation, to solve the assignment problem. The auction uses the estimated maneuver and time of flight costs between the spacecraft and targets to create assignments which minimize a specific "expense'' function for the formation. The delivery problem is the task of delivering the spacecraft to their assigned positions, and it is addressed through one of two guidance schemes described in this work. The first is a delivery scheme based on artificial potential function (APF) guidance. APF guidance uses the relative distances between the spacecraft, targets, and any obstacles to design maneuvers based on gradients of potential fields. The second delivery scheme is based on model predictive control (MPC); this method uses a model of the system dynamics to plan a series of maneuvers designed to minimize a unique cost function. The guidance algorithm uses an analytic linearized approximation of the relative orbital dynamics, the Yamanaka-Ankersen state transition matrix, in the auction process and in both delivery methods. The proposed guidance strategy is successful, in simulations, in autonomously assigning the members of the formation to new positions and in delivering the spacecraft to these new positions safely using both delivery methods. This guidance algorithm can serve as the basis for future autonomous guidance strategies for spacecraft formation missions.

The digital curriculum vitae.

PubMed

Galdino, Greg M; Gotway, Michael

2005-02-01

The curriculum vitae (CV) has been the traditional method for radiologists to illustrate their accomplishments in the field of medicine. Despite its presence in medicine as a standard, widely accepted means to describe one's professional career and its use for decades as an accomplice to most applications and interviews, there is relatively little written in the medical literature regarding the CV. Misrepresentation on medical students', residents', and fellows' applications has been reported. Using digital technology, CVs have the potential to be much more than printed words on paper and offers a solution to misrepresentation. Digital CVs may incorporate full-length articles, graphics, presentations, clinical images, and video. Common formats for digital CVs include CD-ROMs or DVD-ROMs containing articles (in Adobe Portable Document Format) and presentations (in Microsoft PowerPoint format) accompanying printed CVs, word processing documents with hyperlinks to articles and presentations either locally (on CD-ROMs or DVD-ROMs) or remotely (via the Internet), or hypertext markup language documents. Digital CVs afford the ability to provide more information that is readily accessible to those receiving and reviewing them. Articles, presentations, videos, images, and Internet links can be illustrated using standard file formats commonly available to all radiologists. They can be easily updated and distributed on an inexpensive media, such as a CD-ROM or DVD-ROM. With the availability of electronic articles, presentations, and information via the Internet, traditional paper CVs may soon be superseded by their electronic successors.

Observational constraints to boxy/peanut bulge formation time

NASA Astrophysics Data System (ADS)

Pérez, I.; Martínez-Valpuesta, I.; Ruiz-Lara, T.; de Lorenzo-Caceres, A.; Falcón-Barroso, J.; Florido, E.; González Delgado, R. M.; Lyubenova, M.; Marino, R. A.; Sánchez, S. F.; Sánchez-Blázquez, P.; van de Ven, G.; Zurita, A.

2017-09-01

Boxy/peanut bulges are considered to be part of the same stellar structure as bars and both could be linked through the buckling instability. The Milky Way is our closest example. The goal of this Letter is to determine if the mass assembly of the different components leaves an imprint in their stellar populations allowing the estimation the time of bar formation and its evolution. To this aim, we use integral field spectroscopy to derive the stellar age distributions, SADs, along the bar and disc of NGC 6032. The analysis clearly shows different SADs for the different bar areas. There is an underlying old (≥12 Gyr) stellar population for the whole galaxy. The bulge shows star formation happening at all times. The inner bar structure shows stars of ages older than 6 Gyr with a deficit of younger populations. The outer bar region presents an SAD similar to that of the disc. To interpret our results, we use a generic numerical simulation of a barred galaxy. Thus, we constrain, for the first time, the epoch of bar formation, the buckling instability period and the posterior growth from disc material. We establish that the bar of NGC 6032 is old, formed around 10 Gyr ago while the buckling phase possibly happened around 8 Gyr ago. All these results point towards bars being long-lasting even in the presence of gas.

Field-based Digital Mapping of the November 3, 2002 Susitna Glacier Fault Rupture - Integrating remotely sensed data, GIS, and photo-linking technologies

NASA Astrophysics Data System (ADS)

Staft, L. A.; Craw, P. A.

2003-12-01

In July 2003, the U.S. Geological Survey and the Alaska Division of Geological & Geophysical Surveys (DGGS) conducted field studies on the Susitna Glacier Fault (SGF), which ruptured on November 2002 during the M 7.9 Denali fault earthquake. The DGGS assumed responsibility for Geographic Information System (GIS) and data management, integrating remotely sensed imagery, GPS data, GIS, and photo-linking software to aid in planning and documentation of fieldwork. Pre-field preparation included acquisition of over 150, 1:6,000-scale true-color aerial photographs taken shortly after the SGF rupture, 1:63,360-scale color-infrared (CIR) 1980 aerial photographs, and digital geographic information including a 15-minute Digital Elevation Model (DEM), 1:63,360-scale Digital Raster Graphics (DRG), and LandSat 7 satellite imagery. Using Orthomapper software, we orthorectified and mosaiced seven CIRs, creating a georeferenced, digital photo base of the study area. We used this base to reference the 1:6,000-scale aerial photography, to view locations of field sites downloaded from GPS, and to locate linked digital photographs that were taken in the field. Photos were linked using GPS-Photo Link software which "links" digital photographs to GPS data by correlating time stamps from the GPS track log or waypoint file to those of the digital photos, using the correlated point data to create a photo location ESRI shape file. When this file is opened in ArcMap or ArcView with the GPS-Photo Link utility enabled, a thumbnail image of the linked photo appears when the cursor is over the photo location. Viewing photographed features and scarp-profile locations in GIS allowed us to evaluate data coverage of the rupture daily. Using remotely sensed imagery in the field with GIS gave us the versatility to display data on a variety of bases, including topographic maps, air photos, and satellite imagery, during fieldwork. In the field, we downloaded, processed, and reviewed data as it was collected, taking major steps toward final digital map production. Using the described techniques greatly enhanced our ability to analyze and interpret field data; the resulting digital data structure allows us to efficiently gather, disseminate, and archive critical field data.

Biologic meshes are not superior to synthetic meshes in ventral hernia repair: an experimental study with long-term follow-up evaluation.

PubMed

Ditzel, M; Deerenberg, E B; Grotenhuis, N; Harlaar, J J; Monkhorst, K; Bastiaansen-Jenniskens, Y M; Jeekel, J; Lange, J F

2013-10-01

In laparoscopic incisional hernia repair, direct contact between the prosthesis and the abdominal viscera is inevitable, which may lead to an inflammatory reaction resulting in abdominal adhesion formation. This study compared five different synthetic and biologic meshes in terms of adhesion formation, shrinkage, incorporation, and histologic characteristics after a period of 30 and 90 days. In 85 rats, a mesh was positioned intraperitoneally in direct contact with the viscera. Five different meshes were implanted: Prolene (polypropylene), Parietex composite (collagen-coated polyester), Strattice (porcine dermis, non-cross-linked), Surgisis (porcine small intestine submucosa, non-cross-linked), and Permacol (porcine dermis, cross-linked). The meshes were tested in terms of adhesion formation, shrinkage, and incorporation after a period of 30 and 90 days. Additionally, collagen formation after 90 days was determined. Significantly less adhesion formation was observed with Parietex composite (5 %; interquartile range [IQR], 2-5 %) and Strattice (5 %; IQR, 4-10 %) in the long term. In contrast, organs were attached to Permacol with four of seven meshes (57 %), and adhesion coverage of Surgisis mesh was present in 66 % (IQR, 0-100 %) of the cases. After 90 days, the best incorporation was seen with the Parietex composite mesh (79 %; IQR, 61-83 %). After 90 days, major alterations in adhesion formation were seen compared with 30 days. Histologically, Strattice and Parietex composite showed a new mesothelial layer on the visceral side of the mesh. Microscopic degradation and new collagen formation were seen in the Surgisis group. Parietex composite mesh demonstrated the best long-term results compared with all the other meshes. The biologic non-cross-linked mesh, Strattice, showed little adhesion formation and moderate shrinkage but poor incorporation. Biologic meshes are promising, but varying results require a more detailed investigation and demonstrate that biologic meshes are not necessarily superior to synthetic meshes. The significant changes that take place between 30 and 90 days should lead to careful interpretation of short-term experimental results.

Polyelectrolyte complexes between (cross-linked) N-carboxyethylchitosan and (quaternized) poly[2-(dimethylamino)ethyl methacrylate]: preparation, characterization, and antibacterial properties.

PubMed

Yancheva, Elena; Paneva, Dilyana; Maximova, Vera; Mespouille, Laetitia; Dubois, Philippe; Manolova, Nevena; Rashkov, Iliya

2007-03-01

Novel polyelectrolyte complexes (PECs) between N-carboxyethylchitosan (CECh) and well-defined (quaternized) poly[2-(dimethylamino)ethyl methacrylate] (PDMAEMA) have been obtained. The modification of chitosan into CECh allows the preparation of PECs in a pH range in which chitosan cannot form complexes. The CECh/PDMAEMA complex is formed in a narrow pH range around 7. The quaternization of the tertiary amino groups of PDMAEMA enables complex formation with CECh both in neutral and in alkaline medium. Cross-linked CECh is also capable of forming complexes with (quaternized) PDMAEMA. The antibacterial activity of (cross-linked) CECh, (quaternized) PDMAEMA, and their complexes against Escherichia coli has been evaluated. In contrast to (quaternized) PDMAEMA, (cross-linked) CECh exhibits no antibacterial activity. The complex formation between cross-linked CECh and (quaternized) PDMAEMA results in a loss of the inherent antibacterial activity of the latter in neutral medium. In acidic medium, the complexes exhibit strong antibacterial activity due to complex disintegration and release of (quaternized) PDMAEMA.

Haemophilus influenzae Disease (Including Hib) Diagnosis and Treatment

MedlinePlus

... Links Global Hib Vaccination Hib Vaccination Meningitis Pneumonia Sepsis Diagnosis, Treatment, and Complications Recommend on Facebook Tweet ... Links Global Hib Vaccination Hib Vaccination Meningitis Pneumonia Sepsis File Formats Help: How do I view different ...

Issues Involved in the Development of an Open Standard for Data Link of Aviation Weather Information

NASA Technical Reports Server (NTRS)

Grappel, R. D.

2000-01-01

This paper describes how an effective and efficient data link system for the dissemination of aviation weather information could be constructed. The system is built upon existing 'open standard' foundations drawn from current aviation and computer technologies. Issues of communications protocols and application data formats are discussed. The proposed aviation weather data link system is dependent of the actual link mechanism selected.

Effectiveness of link prediction for face-to-face behavioral networks.

PubMed

Tsugawa, Sho; Ohsaki, Hiroyuki

2013-01-01

Research on link prediction for social networks has been actively pursued. In link prediction for a given social network obtained from time-windowed observation, new link formation in the network is predicted from the topology of the obtained network. In contrast, recent advances in sensing technology have made it possible to obtain face-to-face behavioral networks, which are social networks representing face-to-face interactions among people. However, the effectiveness of link prediction techniques for face-to-face behavioral networks has not yet been explored in depth. To clarify this point, here we investigate the accuracy of conventional link prediction techniques for networks obtained from the history of face-to-face interactions among participants at an academic conference. Our findings were (1) that conventional link prediction techniques predict new link formation with a precision of 0.30-0.45 and a recall of 0.10-0.20, (2) that prolonged observation of social networks often degrades the prediction accuracy, (3) that the proposed decaying weight method leads to higher prediction accuracy than can be achieved by observing all records of communication and simply using them unmodified, and (4) that the prediction accuracy for face-to-face behavioral networks is relatively high compared to that for non-social networks, but not as high as for other types of social networks.

Study for HDR cross-link for formation flight satellite systems

NASA Astrophysics Data System (ADS)

Nishinaga, Nozomu; Takayama, Yoshihisa; Takahashi, Takashi; Ogawa, Yasuo; Kubooka, Toshihiro; Umehara, Hiroaki

2003-07-01

In this paper we studied about optical and millimeter radio wave cross-link for formation flight communication satellite system in a geostationary orbit. In formation flight system, since the distance among the satellites becomes short compared with the conventional inter satellite comunication link, the size and the weight of the communication system can be reduced. If the high data rate cross-link among the satellites which is equal to the whole transponder bandwidth can be established, the functionally distributed communications satellite system can be constructed. Then, by exchanging a part of the satellite system without the physical contact, in other words, by exchange some old satellites and new ones, the fully reconfigurable and long lifetime (from the point of the function) satellite communication system which can follow the paradigm shift in the terrestrial communications technology can be realize. On the other hand, however, since the maximum of relative angle error among two satellites is enlarged, the tracking becomes difficult. In this study, it turns the electric power which is gotten from the shortening the distance to making beam width large. Here, we examine communication among two satellites (10Km distance) where the data rate is 1Gbps.

Premier's imaging IR limb sounder

NASA Astrophysics Data System (ADS)

Kraft, Stefan; Bézy, Jean-Loup; Meynart, Roland; Langen, Jörg; Carnicero Dominguez, Bernardo; Bensi, Paolo; Silvestrin, Pierluigi

2017-11-01

The Imaging IR Limb Sounder (IRLS) is one of the two instruments planned on board of the candidate Earth Explorer Core Mission PREMIER. PREMIER stands for PRocess Exploration through Measurements of Infrared and Millimetre-wave Emitted Radiation. PREMIER went recently through the process of a feasibility study (Phase A) within the Earth Observation Envelope Program. Emerging from recent advanced instrument technologies IRLS shall, next to a millimetre-wave limb sounder (called STEAMR), explore the benefits of three-dimensional limb sounding with embedded cloud imaging capability. Such 3D imaging technology is expected to open a new era of limb sounding that will allow detailed studies of the link between atmospheric composition and climate, since it will map simultaneously fields of temperature and many trace gases in the mid/upper troposphere and stratosphere across a large vertical and horizontal field of view and with high vertical and horizontal resolution. PREMIER shall fly in a tandem formation looking backwards to METOP's swath and thereby improve meteorological and environmental analyses.

Research on Formation of Microsatellite Communication with Genetic Algorithm

PubMed Central

Wu, Guoqiang; Bai, Yuguang; Sun, Zhaowei

2013-01-01

For the formation of three microsatellites which fly in the same orbit and perform three-dimensional solid mapping for terra, this paper proposes an optimizing design method of space circular formation order based on improved generic algorithm and provides an intersatellite direct spread spectrum communication system. The calculating equation of LEO formation flying satellite intersatellite links is guided by the special requirements of formation-flying microsatellite intersatellite links, and the transmitter power is also confirmed throughout the simulation. The method of space circular formation order optimizing design based on improved generic algorithm is given, and it can keep formation order steady for a long time under various absorb impetus. The intersatellite direct spread spectrum communication system is also provided. It can be found that, when the distance is 1 km and the data rate is 1 Mbps, the input wave matches preferably with the output wave. And LDPC code can improve the communication performance. The correct capability of (512, 256) LDPC code is better than (2, 1, 7) convolution code, distinctively. The design system can satisfy the communication requirements of microsatellites. So, the presented method provides a significant theory foundation for formation-flying and intersatellite communication. PMID:24078796

Research on formation of microsatellite communication with genetic algorithm.

PubMed

Wu, Guoqiang; Bai, Yuguang; Sun, Zhaowei

2013-01-01

For the formation of three microsatellites which fly in the same orbit and perform three-dimensional solid mapping for terra, this paper proposes an optimizing design method of space circular formation order based on improved generic algorithm and provides an intersatellite direct spread spectrum communication system. The calculating equation of LEO formation flying satellite intersatellite links is guided by the special requirements of formation-flying microsatellite intersatellite links, and the transmitter power is also confirmed throughout the simulation. The method of space circular formation order optimizing design based on improved generic algorithm is given, and it can keep formation order steady for a long time under various absorb impetus. The intersatellite direct spread spectrum communication system is also provided. It can be found that, when the distance is 1 km and the data rate is 1 Mbps, the input wave matches preferably with the output wave. And LDPC code can improve the communication performance. The correct capability of (512, 256) LDPC code is better than (2, 1, 7) convolution code, distinctively. The design system can satisfy the communication requirements of microsatellites. So, the presented method provides a significant theory foundation for formation-flying and intersatellite communication.

Levels of mature cross-links and advanced glycation end product cross-links in human vitreous.

PubMed

Matsumoto, Yukihiro; Takahashi, Masaaki; Chikuda, Makoto; Arai, Kiyomi

2002-01-01

To determine the levels of pyridinoline and deoxypyridinoline, two mature enzymatic cross-links, and pentosidine, an advanced glycation end product (AGE) cross-link, in the human vitreous, and to investigate the correlations among the cross-links and the effects of aging and diabetes mellitus (DM) on the levels of cross-links. Forty-five vitreous samples were collected from 32 patients (32 eyes) undergoing vitrectomy for diabetic retinopathy (DM group) and from 13 patients (13 eyes) (control group) who were age- and sex-matched patients with idiopathic macular hole or epiretinal membrane with no systemic conditions. The levels of the cross-links were determined using high-performance liquid chromatography after acid hydrolysis and pretreatment with SP-Sephadex. The levels of pentosidine, pyridinoline, and deoxypyridinoline were 27.3 +/- 23.1 (mean +/- SD) pmol/mL (detectable in 45 of 45 specimens), 79.0 +/- 40.2 ng/mL (43 of 45 specimens), and 54.0 +/- 9.5 (32 of 45 specimens) ng/mL, respectively. When the vitreous samples from the DM and the control groups were compared, a significant difference (P <.05) was found in the pentosidine level but not in the levels of pyridinoline or deoxypyridinoline. No significant correlations were found between age and the cross-links. Significant correlations (P <.01) were found among the cross-links. The results indicate that mature cross-link substances exist in the human vitreous. The results also suggest that glycation may occur in the vitreous after mature cross-links form and result in the formation of AGE cross-links. In human vitreous from patients with DM, increased levels of AGE cross-links may stabilize the formation of mature cross-links, but they did not increase the mature cross-links.

Extended halos and intracluster light using Planetary Nebulae as tracers in nearby clusters

NASA Astrophysics Data System (ADS)

Arnaboldi, Magda

Since the first detection of intracluster planetary nebulae in 1996, imaging and spectroscopic surveys identified such stars to trace the radial extent and the kinematics of diffuse light in clusters. This topic of research is tightly linked with the studies of galaxy formation and evolution in dense environment, as the spatial distribution and kinematics of planetary nebulae in the outermost regions of galaxies and in the cluster cores is relevant for setting constraints on cosmological simulations. In this sense, extragalactic planetary nebulae play a very important role in the near-field cosmology, in order to measure the integrated mass as function of radius and the orbital distribution of stars in structures placed in the densest regions of the nearby universe.

Role of Neuroinflammation in Adult Neurogenesis and Alzheimer Disease: Therapeutic Approaches

PubMed Central

Llorens-Martín, María; Hernández, Félix; Avila, Jesús

2013-01-01

Neuroinflammation, a specialized immune response that takes place in the central nervous system, has been linked to neurodegenerative diseases, and specially, it has been considered as a hallmark of Alzheimer disease, the most common cause of dementia in the elderly nowadays. Furthermore, neuroinflammation has been demonstrated to affect important processes in the brain, such as the formation of new neurons, commonly known as adult neurogenesis. For this, many therapeutic approaches have been developed in order to avoid or mitigate the deleterious effects caused by the chronic activation of the immune response. Considering this, in this paper we revise the relationships between neuroinflammation, Alzheimer disease, and adult neurogenesis, as well as the current therapeutic approaches that have been developed in the field. PMID:23690659

A spaceborne receiver for measuring electromagnetic field intensity

NASA Technical Reports Server (NTRS)

Reich, B. W.; Van Dusen, M. R.; Habib, E. J.

1973-01-01

Description of a very accurately controlled receiver for monitoring the electromagnetic radiations in both existing and projected space communication bands. Based on analysis of the existing and projected space communication bands, 108 to 174 MHz, 240 to 478 MHz, and 1535 to 1665 MHz were covered. The receiver achieves accurate control via a digitally tuned synthesizer and a wide range of digital control including frequency band coverage and gain control selection. Digital memory was provided to store 16 separate digital command instructions which can be programmed via a command data link. The receiver provides for transmission to the ground of both a predetection signal and signals in digital format, which in turn, were provided by sampling and analog-to-digital conversions.

Uncovering the formation and selection of benzylmalonyl-CoA from the biosynthesis of splenocin and enterocin reveals a versatile way to introduce amino acids into polyketide carbon scaffolds.

PubMed

Chang, Chenchen; Huang, Rong; Yan, Yan; Ma, Hongmin; Dai, Zheng; Zhang, Benying; Deng, Zixin; Liu, Wen; Qu, Xudong

2015-04-01

Selective modification of carbon scaffolds via biosynthetic engineering is important for polyketide structural diversification. Yet, this scope is currently restricted to simple aliphatic groups due to (1) limited variety of CoA-linked extender units, which lack aromatic structures and chemical reactivity, and (2) narrow acyltransferase (AT) specificity, which is limited to aliphatic CoA-linked extender units. In this report, we uncovered and characterized the first aromatic CoA-linked extender unit benzylmalonyl-CoA from the biosynthetic pathways of splenocin and enterocin in Streptomyces sp. CNQ431. Its synthesis employs a deamination/reductive carboxylation strategy to convert phenylalanine into benzylmalonyl-CoA, providing a link between amino acid and CoA-linked extender unit synthesis. By characterization of its selection, we further validated that AT domains of splenocin, and antimycin polyketide synthases are able to select this extender unit to introduce the phenyl group into their dilactone scaffolds. The biosynthetic machinery involved in the formation of this extender unit is highly versatile and can be potentially tailored for tyrosine, histidine and aspartic acid. The disclosed aromatic extender unit, amino acid-oriented synthetic pathway, and aromatic-selective AT domains provides a systematic breakthrough toward current knowledge of polyketide extender unit formation and selection, and also opens a route for further engineering of polyketide carbon scaffolds using amino acids.

Critical Zone Experimental Design to Assess Soil Processes and Function

NASA Astrophysics Data System (ADS)

Banwart, Steve

2010-05-01

Through unsustainable land use practices, mining, deforestation, urbanisation and degradation by industrial pollution, soil losses are now hypothesized to be much faster (100 times or more) than soil formation - with the consequence that soil has become a finite resource. The crucial challenge for the international research community is to understand the rates of processes that dictate soil mass stocks and their function within Earth's Critical Zone (CZ). The CZ is the environment where soils are formed, degrade and provide their essential ecosystem services. Key among these ecosystem services are food and fibre production, filtering, buffering and transformation of water, nutrients and contaminants, storage of carbon and maintaining biological habitat and genetic diversity. We have initiated a new research project to address the priority research areas identified in the European Union Soil Thematic Strategy and to contribute to the development of a global network of Critical Zone Observatories (CZO) committed to soil research. Our hypothesis is that the combined physical-chemical-biological structure of soil can be assessed from first-principles and the resulting soil functions can be quantified in process models that couple the formation and loss of soil stocks with descriptions of biodiversity and nutrient dynamics. The objectives of this research are to 1. Describe from 1st principles how soil structure influences processes and functions of soils, 2. Establish 4 European Critical Zone Observatories to link with established CZOs, 3. Develop a CZ Integrated Model of soil processes and function, 4. Create a GIS-based modelling framework to assess soil threats and mitigation at EU scale, 5. Quantify impacts of changing land use, climate and biodiversity on soil function and its value and 6. Form with international partners a global network of CZOs for soil research and deliver a programme of public outreach and research transfer on soil sustainability. The experimental design studies soil processes across the temporal evolution of the soil profile, from its formation on bare bedrock, through managed use as productive land to its degradation under longstanding pressures from intensive land use. To understand this conceptual life cycle of soil, we have selected 4 European field sites as Critical Zone Observatories. These are to provide data sets of soil parameters, processes and functions which will be incorporated into the mathematical models. The field sites are 1) the BigLink field station which is located in the chronosequence of the Damma Glacier forefield in alpine Switzerland and is established to study the initial stages of soil development on bedrock; 2) the Lysina Catchment in the Czech Republic which is representative of productive soils managed for intensive forestry, 3) the Fuchsenbigl Field Station in Austria which is an agricultural research site that is representative of productive soils managed as arable land and 4) the Koiliaris Catchment in Crete, Greece which represents degraded Mediterranean region soils, heavily impacted by centuries of intensive grazing and farming, under severe risk of desertification.

[Geomagnetic field variations in the human prenatal period and cancer in adults].

PubMed

Iamshanov, V A

2007-01-01

Our earlier evidence pointed to a relationship between geomagnetic field (GMF) variations in pre- and early postnatal periods and appearance in the future of oncopathology in these patients. It appears to contribute to risk for such malignancies in adults as breast, lung, liver, bladder, kidney, prostate, hypophysis cancer, ovarian carcinoma, skin melanoma, Hodgkin's disease, lymphoma, and probably stomach cancer. No link was detected between esophageal, thyroid, colorectal cancer or cervical carcinoma, on the one hand, and GMF variations in prenatal period, on the other. It is suggested that low intensity of GMF is associated with increased death of macrophages and other granulocytes as well as nitric oxide formation both in fetal and maternal organism. The latter factor induces genes responsible for detoxication. In adults, under normal or disturbed GMF conditions, detoxication processes take care of excessive blood-nitric oxide. Both in fetus and mother, due to high GMF intensity, granulocyte decay is inhibited thus causing nitric oxide levels to fall. As a consequence, detoxication fails. That accounts for excessive blood-nitric oxide formation at adult stage when GMF intensity is low or normal. Nitric oxide causes certain nitrosamines to form, which are tissue-specific carcinogens. Therefore, the lower level of GMF oscillations was in pre- and early postnatal periods than in more late terms tumors appeared (for example, the negative correlation for breast cancer took place).

On-Road Chemical Transformation as an Important Mechanism of NO2 Formation.

PubMed

Yang, Bo; Zhang, K Max; Xu, W David; Zhang, Shaojun; Batterman, Stuart; Baldauf, Richard W; Deshmukh, Parikshit; Snow, Richard; Wu, Ye; Zhang, Qiang; Li, Zhenhua; Wu, Xian

2018-04-17

Nitrogen dioxide (NO 2 ) not only is linked to adverse effects on the respiratory system but also contributes to the formation of ground-level ozone (O 3 ) and fine particulate matter (PM 2.5 ). Our curbside monitoring data analysis in Detroit, MI, and Atlanta, GA, strongly suggests that a large fraction of NO 2 is produced during the "tailpipe-to-road" stage. To substantiate this finding, we designed and carried out a field campaign to measure the same exhaust plumes at the tailpipe-level by a portable emissions measurement system (PEMS) and at the on-road level by an electric vehicle-based mobile platform. Furthermore, we employed a turbulent reacting flow model, CTAG, to simulate the on-road chemistry behind a single vehicle. We found that a three-reaction (NO-NO 2 -O 3 ) system can largely capture the rapid NO to NO 2 conversion (with time scale ≈ seconds) observed in the field studies. To distinguish the contributions from different mechanisms to near-road NO 2 , we clearly defined a set of NO 2 /NO x ratios at different plume evolution stages, namely tailpipe, on-road, curbside, near-road, and ambient background. Our findings from curbside monitoring, on-road experiments, and simulations imply the on-road oxidation of NO by ambient O 3 is a significant, but so far ignored, contributor to curbside and near-road NO 2 .

High-aggregate-capacity visible light communication links using stacked multimode polymer waveguides and micro-pixelated LED arrays

NASA Astrophysics Data System (ADS)

Bamiedakis, N.; McKendry, J. J. D.; Xie, E.; Gu, E.; Dawson, M. D.; Penty, R. V.; White, I. H.

2018-02-01

In recent years, light emitting diodes (LEDs) have gained renewed interest for use in visible light communication links (VLC) owing to their potential use as both high-quality power-efficient illumination sources as well as low-cost optical transmitters in free-space and guided-wave links. Applications that can benefit from their use include optical wireless systems (LiFi and Internet of Things), in-home and automotive networks, optical USBs and short-reach low-cost optical interconnects. However, VLC links suffer from the limited LED bandwidth (typically 100 MHz). As a result, a combination of novel LED devices, advanced modulation formats and multiplexing methods are employed to overcome this limitation and achieve high-speed (>1 Gb/s) data transmission over such links. In this work, we present recent advances in the formation of high-aggregate-capacity low cost guided wave VLC links using stacked polymer multimode waveguides and matching micro-pixelated LED (μLED) arrays. μLEDs have been shown to exhibit larger bandwidths (>200 MHz) than conventional broad-area LEDs and can be formed in large array configurations, while multimode polymer waveguides enable the formation of low-cost optical links onto standard PCBs. Here, three- and four-layered stacks of multimode waveguides, as well as matching GaN μLED arrays, are fabricated in order to generate high-density yet low-cost optical interconnects. Different waveguide topologies are implemented and are investigated in terms of loss and crosstalk performance. The initial results presented herein demonstrate good intrinsic crosstalk performance and indicate the potential to achieve >= 0.5 Tb/s/mm2 aggregate interconnection capacity using this low-cost technology.

Flight Deck Data Link Displays: An Evaluation of Textual and Graphical Implementations

NASA Technical Reports Server (NTRS)

McGann, Alison; Lozito, Sandy; Corker, Kevin; Ashford, Rose (Technical Monitor)

2001-01-01

In Experiment 1, 16 pilots participated in a part-task simulation study that evaluated pilot data link communication for short and long message types and for two textual formats. No differences were found between the two textual formats when evaluating data link transaction times and pilot performance on a secondary task. Pilots initiated flight changes more quickly with the T-Scan format, where location of clearance information roughly corresponded to the cockpit instrument layout. Longer messages were less problematic than two short messages sent in close succession as pilots required more verbal clarification for closely spaced messages. 24 pilots participated in a second experiment that evaluated pilot communication performance for textual data link, two implementations of graphical data link, and a combined graphical and textual information modality. The two modalities incorporating text resulted in significantly faster transaction times and better performance on the secondary task than the two graphical-only implementations. The interval between messages was also more systematically varied in Experiment 2, and a short interval between messages significantly increased the access time for the second message. This delay in access was long enough to increase significantly the total transaction time of the second message, and this effect was exaggerated for the graphical-only implementations. Time to view the message before acknowledgement and time to initiate flight changes were not affected by the interval manipulation, This suggests that pilots adopt a sequential message handling strategy, and presenting messages closely in succession may present operational problems in a data link Air Traffic Control (ATC) environment. The results of this study also indicate that the perceived importance of message content is currently a crucial element in pilot data link communication.

The Cremeomycin Biosynthetic Gene Cluster Encodes a Pathway for Diazo Formation.

PubMed

Waldman, Abraham J; Pechersky, Yakov; Wang, Peng; Wang, Jennifer X; Balskus, Emily P

2015-10-12

Diazo groups are found in a range of natural products that possess potent biological activities. Despite longstanding interest in these metabolites, diazo group biosynthesis is not well understood, in part because of difficulties in identifying specific genes linked to diazo formation. Here we describe the discovery of the gene cluster that produces the o-diazoquinone natural product cremeomycin and its heterologous expression in Streptomyces lividans. We used stable isotope feeding experiments and in vitro characterization of biosynthetic enzymes to decipher the order of events in this pathway and establish that diazo construction involves late-stage N-N bond formation. This work represents the first successful production of a diazo-containing metabolite in a heterologous host, experimentally linking a set of genes with diazo formation. © 2015 WILEY-VCH Verlag GmbH & Co. KGaA, Weinheim.

Real-time dual-polarization transmission based on hybrid optical wireless communications

NASA Astrophysics Data System (ADS)

Sousa, Artur N.; Alimi, Isiaka A.; Ferreira, Ricardo M.; Shahpari, Ali; Lima, Mário; Monteiro, Paulo P.; Teixeira, António L.

2018-01-01

We present experimental work on a gigabit-capable and long-reach hybrid coherent UWDM-PON plus FSO system for supporting different applications over the same fiber infrastructure in the mobile backhaul (MBH) networks. Also, for the first time, we demonstrate a reconfigurable real-time DSP transmission/reception of DP-QPSK signals over standard single-mode fiber (SSMF) and FSO links. The receiver presented is based on a commercial field-programmable gate array (FPGA). The considered communication links are based on 20 UDWDM channels with 625 Mbaud and 2.5 GHz channel spacing. We are able to demonstrate the lowest sampling rate required for digital coherent PON by employing four 1.25 Gsa/s ADCs using an electrical front-end receiver that offers only 1 GHz analog bandwidth. We achieved this by implementing a phase and polarization diversity coherent receiver combined with the DP-QPSK modulation formats. The system performance is estimated in terms of receiver sensitivity. The results show the viability of coherent PON and flexible dual-polarization supported by software-defined transceivers for the MBH.

Space Plasma Ion Processing of the Lunar Soil: Modeling of Radiation-Damaged Rim Widths on Lunar Grains

NASA Technical Reports Server (NTRS)

Chamberlin, S.; Christoffersen, R.; Keller, L.

2007-01-01

Chemically and microstructurally complex altered rims around grains in the finest size fraction (<20 micron) of the lunar regolith are the result of multi-stage processes involving both solar ion radiation damage and nanoscale deposition of impact or sputter-derived vapors. The formation of the rims is an important part of the space weathering process, and is closely linked to key changes in optical reflectance and other bulk properties of the lunar surface. Recent application of field-emission scanning transmission electron microscope techniques, including energy dispersive X-ray spectral imaging, is making it easier to unravel the "nano-stratigraphy" of grain rims, and to delineate the portions of rims that represent Radiation-Amorphized (RA) host grain from overlying amorphous material that represents vapor/sputter deposits. For the portion of rims formed by host grain amorphization (henceforth called RA rims), we have been investigating the feasibility of using Monte Carlo-type ion-atom collision models, combined with experimental ion irradiation data, to derive predictive numerical models linking the width of RA rims to the grain s integrated solar ion radiation exposure time.

The Balloon-borne Large Aperture Telescope for Polarization - BLASTPol

NASA Astrophysics Data System (ADS)

Devlin, Mark

We are proposing a comprehensive program to study the link between Galactic magnetic fields and star formation. After decades of study, the physical processes regulating star formation still remain poorly understood. Large-scale observations of star forming regions provide counts of the number of dense clouds each of which will eventually evolve into tens to hundreds of stars. However, when simple models of gravitational collapse are applied to the clouds they yield a Galactic star formation rate (SFR) which is many times what is actually observed. Some process or combination of processes must be slowing the collapse of the clouds. The two prevailing theories involve turbulence which prevents the effective dissipation of energy and Galactic magnetic fields which are captured and squeezed by the collapsing cloud provide a mechanism for mechanical support. Understanding these effects fits very well the SMD 2010 Science Plan's Cosmic Origins program. The Balloon-borne Large Aperture Telescope - BLAST was originally designed to conduct confusion-limited and wide-area extragalactic and Galactic surveys at submillimeter wavelengths from a long-duration balloon (LDB) platform. These wavelengths are impossible or very difficult to observe from even the best groundbased telescope sites. After a series of successful flights (Ft. Sumner 2003, Sweden 2005, and Antarctica 2006) resulting in over 25 publications, BLAST was converted to BLASTPol. The combination of a polarizing grid in front of each of the 266 feed horns at 250, 350 and 500 micron with a stepped Half Wave Plate (HWP) provided a quick and inexpensive way to make initial measurements of polarized dust emission in star forming regions. By mapping polarization from dust grains aligned with respect to their local magnetic field, the field orientation (projected on the sky) can be traced. The development of the Next Generation BLASTPol instrument is now complete. It has increased spatial resolution (22 arcseconds at 250 microns), four times the field of view (340 square arcminutes) and 12 times the mapping speed of the previous instrument. The focus of this three year proposal is to fly BLASTPol, make deep maps of star forming regions with sizes ranging from 0.25 to 20 square degrees, and to probe galactic dust as a foreground for future Cosmic Microwave Background experiments. This work also includes an extensive data analysis phase.

Stellar Populations and Radial Migrations in Virgo Disk Galaxies

NASA Astrophysics Data System (ADS)

Roediger, Joel C.; Courteau, Stéphane; Sánchez-Blázquez, Patricia; McDonald, Michael

2012-10-01

We present new stellar age profiles, derived from well-resolved optical and near-infrared images of 64 Virgo cluster disk galaxies, whose analysis poses a challenge for current disk galaxy formation models. Our ability to break the age-metallicity degeneracy and the significant size of our sample represent key improvements over complementary studies of field disk galaxies. Our results can be summarized as follows: first, and contrary to observations of disk galaxies in the field, these cluster galaxies are distributed almost equally amongst the three main types of disk galaxy luminosity profiles (I/II/III), indicating that the formation and/or survival of Type II breaks is suppressed within the cluster environment. Second, we find examples of statistically significant inversions ("U-shapes") in the age profiles of all three disk galaxy types, reminiscent of predictions from high-resolution simulations of classically truncated Type II disks in the field. These features characterize the age profiles for only about a third (<=36%) of each disk galaxy type in our sample. An even smaller fraction of cluster disks (~11% of the total sample) exhibit age profiles that decrease outward (i.e., negative age gradients). Instead, flat and/or positive age gradients prevail (>=50%) within our Type I, II, and III subsamples. These observations thus suggest that while stellar migrations and inside-out growth can play a significant role in the evolution of all disk galaxy types, other factors contributing to the evolution of galaxies can overwhelm the predicted signatures of these processes. We interpret our observations through a scenario whereby Virgo cluster disk galaxies formed initially like their brethren in the field but which, upon falling into the cluster, were transformed into their present state through external processes linked to the environment (e.g., ram-pressure stripping and harassment). Current disk galaxy formation models, which have largely focused on field galaxies, fail to reproduce these results, thus calling for adequate hydrodynamical simulations of dense galaxy environments if we are to understand cluster disks. The current paper highlights numerous constraints for such simulations. In the Appendix, we confirm the claim by Erwin et al. that Type II breaks are absent in Virgo cluster S0s and discuss the detection of Type III breaks in such galaxies.

Why do gelatinized starch granules not dissolve completely? Roles for amylose, protein, and lipid in granule "ghost" integrity.

PubMed

Debet, Martine R; Gidley, Michael J

2007-06-13

After gelatinization in water, starch granules persist in swollen hydrated forms known as ghosts. Three potential mechanisms for ghost formation are tested. Proteins and lipids on the granule surface are found to be a determinant of ghost robustness, but not ghost formation. Proteins inside pre-made maize or wheat starch ghosts are degraded extensively by proteases without any apparent change in ghost properties, making an internal protein cross-linking mechanism unlikely. Waxy maize mutants with a range of amylose contents have ghost integrities that correlate with (low) apparent amylose levels. It is hypothesized that ghost formation is due to cross-linking of polysaccharide chains within swollen granules, most likely involving double helices formed from polymer chains that become free to move following heat-induced granule swelling. The size and robustness of granule ghosts is proposed to be determined by the relative rates of swelling and cross-linking, modulated by surface non-polysaccharide components.

Assembly Kinetics Determine the Architecture of α-actinin Crosslinked F-actin Networks

PubMed Central

Falzone, Tobias T.; Lenz, Martin; Kovar, David R.; Gardel, Margaret L.

2013-01-01

The actin cytoskeleton is organized into diverse meshworks and bundles that support many aspects of cell physiology. Understanding the self-assembly of these actin-based structures is essential for developing predictive models of cytoskeletal organization. Here we show that the competing kinetics of bundle formation with the onset of dynamic arrest arising from filament entanglements and cross-linking determine the architecture of reconstituted actin networks formed with α-actinin cross-links. Cross-link mediated bundle formation only occurs in dilute solutions of highly mobile actin filaments. As actin polymerization proceeds, filament mobility and bundle formation are arrested concomitantly. By controlling the onset of dynamic arrest, perturbations to actin assembly kinetics dramatically alter the architecture of biochemically identical samples. Thus, the morphology of reconstituted F-actin networks is a kinetically determined structure similar to those formed by physical gels and glasses. These results establish mechanisms controlling the structure and mechanics in diverse semi-flexible biopolymer networks. PMID:22643888

Early Detection | Division of Cancer Prevention

Cancer.gov

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Dwarf galaxies in the coma cluster: Star formation properties and evolution

NASA Astrophysics Data System (ADS)

Hammer, Derek M.

The infall regions of galaxy clusters are unique laboratories for studying the impact of environment on galaxy evolution. This intermediate region links the low-density field environment and the dense core of the cluster, and is thought to host recently accreted galaxies whose star formation is being quenched by external processes associated with the cluster. In this dissertation, we measure the star formation properties of galaxies at the infall region of the nearby rich cluster of galaxies, Coma. We rely primarily on Ultraviolet (UV) data owing to its sensitivity to recent star formation and we place more emphasis on the properties of dwarf galaxies. Dwarf galaxies are good tracers of external processes in clusters but their evolution is poorly constrained as they are intrinsically faint and hence more challenging to detect. We make use of deep GALEX far-UV and near-UV observations at the infall region of the Coma cluster. This area of the cluster has supporting photometric coverage at optical and IR wavelengths in addition to optical spectroscopic data that includes deep redshift coverage of dwarf galaxies in Coma. Our GALEX observations were the deepest exposures taken for a local galaxy cluster. The depth of these images required alternative data analysis techniques to overcome systematic effects that limit the default GALEX pipeline analysis. Specifically, we used a deblending method that improved detection efficiency by a factor of ˜2 and allowed reliable photometry a few magnitudes deeper than the pipeline catalog. We performed deep measurements of the total UV galaxy counts in our field that were used to measure the source confusion limit for crowded GALEX fields. The star formation properties of Coma members were studied for galaxies that span from starbursts to passive galaxies. Star-forming galaxies in Coma tend to have lower specific star formation rates, on average, as compared to field galaxies. We show that the majority of these galaxies are likely in the process of being quenched or were only recently quenched. We modeled the quenching timescales for transition galaxies, or “green valley” objects, and found that the majority are quenched in less than 1 Gyr. This timescale is consistent with rapid dynamical processes that are active in the cluster environment as opposed to the more gradual quenching mechanisms that exist in the group environment. For the passive galaxy population, we have measured an average stellar age of 6-8 Gyr for the red sequence which is consistent with previous studies based on spectroscopic observations. We note that the star formation properties of Coma member galaxies were established from photometry alone, as opposed to using spectroscopic data which are more challenging to obtain for dwarf galaxies. We have measured the faintest UV luminosity functions (LFs) presented for a rich galaxy cluster thus far. The Coma UV LFs are 3.5 mag fainter than previous studies in Coma, and are sufficiently deep that we reach the dwarf passive galaxy population for the first time. We have introduced a new technique for measuring the LF which avoids color selection effects associated with previous methods. The UV LFs constructed separately for star-forming and passive galaxies follow a similar distribution at faint magnitudes, which suggests that the recent quenching of infalling dwarf star-forming galaxies is sufficient to build the dwarf passive population in Coma. The Coma UV LFs show a turnover at faint magnitudes as compared to the field, owing to a deficit of dwarf galaxies with stellar masses below M∗ = 108 M⊙ . We show that the UV LFs for the field behind the Coma cluster are nearly identical to the average field environment, and do not show evidence for a turnover at faint magnitudes. We suspect that the missing dwarf galaxies in Coma are severely disrupted by tidal processes as they are accreted onto the cluster, just prior to reaching the infall region studied here.

Providing Geographic Datasets as Linked Data in Sdi

NASA Astrophysics Data System (ADS)

Hietanen, E.; Lehto, L.; Latvala, P.

2016-06-01

In this study, a prototype service to provide data from Web Feature Service (WFS) as linked data is implemented. At first, persistent and unique Uniform Resource Identifiers (URI) are created to all spatial objects in the dataset. The objects are available from those URIs in Resource Description Framework (RDF) data format. Next, a Web Ontology Language (OWL) ontology is created to describe the dataset information content using the Open Geospatial Consortium's (OGC) GeoSPARQL vocabulary. The existing data model is modified in order to take into account the linked data principles. The implemented service produces an HTTP response dynamically. The data for the response is first fetched from existing WFS. Then the Geographic Markup Language (GML) format output of the WFS is transformed on-the-fly to the RDF format. Content Negotiation is used to serve the data in different RDF serialization formats. This solution facilitates the use of a dataset in different applications without replicating the whole dataset. In addition, individual spatial objects in the dataset can be referred with URIs. Furthermore, the needed information content of the objects can be easily extracted from the RDF serializations available from those URIs. A solution for linking data objects to the dataset URI is also introduced by using the Vocabulary of Interlinked Datasets (VoID). The dataset is divided to the subsets and each subset is given its persistent and unique URI. This enables the whole dataset to be explored with a web browser and all individual objects to be indexed by search engines.

Effects of primordial magnetic field on the formation rate of dark matter halos

NASA Astrophysics Data System (ADS)

Cheera, Varalakshmi; Nigam, Rahul

2018-05-01

We construct and demonstrate a method for computing the formation rate of the dark matter halo in the hierarchical model set up. This method uses the Press-Schecter distribution for the halos and hence applies only to the spherical halos. But this can be generalized to ellipsoidal structures also if one uses the Sheth-Torman distribution. After obtaining the formation rate, we study the effect of primordial magnetic field on the dynamics of these halos. We investigate the effect for different field strengths and conclude that a magnetic field stronger than 10 nG would impact the halos larger than 108 solar masses while a weaker field affects the formation rate of smaller halos.

Deep-water bedforms induced by refracting Internal Solitary Waves

NASA Astrophysics Data System (ADS)

Falcini, Federico; Droghei, Riccardo; Casalbore, Daniele; Martorelli, Eleonora; Mosetti, Renzo; Sannino, Gianmaria; Santoleri, Rosalia; Latino Chiocci, Francesco

2017-04-01

Subaqueous bedforms (or sand waves) are typically observed in those environments that are exposed to strong currents, characterized by a dominant unidirectional flow. However, sand-wave fields may be also observed in marine environments where no such current exists; the physical processes driving their formation are enigmatic or not well understood. We propose that internal solitary waves (ISWs), induced by tides, can produce an effective, unidirectional boundary flow filed that forms asymmetric sand waves. We test this idea by examining a sand-wave field off the Messina Strait, where we hypothesize that ISWs formed at the interface between intermediate and surface waters are refracted by topography. Hence, we argue that the deflected pattern (i.e., the depth-dependent orientation) of the sand-wave field is due to refraction of such ISWs. Combining field observations and numerical modelling, we show that ISWs can account for three key features: ISWs produce fluid velocities capable of mobilizing bottom sediments; the predicted refraction pattern resulting from the interaction of ISWs with bottom topography matches the observed deflection of the sand waves; and predicted migration rates of sand waves match empirical estimates. This work shows how ISWs may contribute to sculpting the structure of continental margins and it represents a promising link between the geological and oceanographic communities.

Hydrothermal growth of cross-linked hyperbranched copper dendrites using copper oxalate complex

NASA Astrophysics Data System (ADS)

Truong, Quang Duc; Kakihana, Masato

2012-06-01

A facile and surfactant-free approach has been developed for the synthesis of cross-linked hyperbranched copper dendrites using copper oxalate complex as a precursor and oxalic acid as a reducing and structure-directing agent. The synthesized particles are composed of highly branched nanostructures with unusual cross-linked hierarchical networks. The formation of copper dendrites can be explained in view of both diffusion control and aggregation-based growth model accompanied by the chelation-assisted assembly. Oxalic acid was found to play dual roles as reducing and structure-directing agent based on the investigation results. The understanding on the crystal growth and the roles of oxalic acid provides clear insight into the formation mechanism of hyperbranched metal dendrites.

GBSFP: General Bluetooth Scatternet Formation Protocol for Ad Hoc Networking

NASA Astrophysics Data System (ADS)

Lim, Chaegwon; Huh, Myung-Sun; Choi, Chong-Ho; Jeong, Gu-Min

Recently, bluetooth technology has become widely prevalent so that many laptops and mobile phones are equipped with bluetooth capability. In order to meet the increasing demand to interconnect these devices a new scatternet formation protocol named GBSFP (General Bluetooth Scatternet Formation Protocol) is proposed in this paper. GBSFP is the result of efforts to overcome the two major limitations of the legacy scatternet formation protocols as regards their real implementation, that all of the nodes should be within the Bluetooth communication range or that they should be time synchronized. In GBSFP, a node goes through three phases; 1) the Init phase to establish a bluetooth link to as many of its neighbors as possible, 2) the Ready phase to determine the role of each node, i.e., master or slave, and remove any unnecessary bluetooth links, and 3) the Complete phase to finalize the formation of the scatternet and begin data transmission. The simulation results show that GBSFP provides higher connectivity in many scenarios compared with BTCP and BlueStars.

78 FR 29338 - Applications for New Award; Technical Assistance To Improve State Data Capacity-National...

Federal Register 2010, 2011, 2012, 2013, 2014

2013-05-20

... formative and summative evaluations of the project; Note: The following Web site provides more information... plan, linked to the project's logic model, for a formative evaluation of the project's activities. The plan must describe how the formative evaluation will use clear performance objectives to ensure...

Linking Delinquency and Personal Identity Formation across Adolescence: Examining Between- and Within-Person Associations

ERIC Educational Resources Information Center

Mercer, Natalie; Crocetti, Elisabetta; Branje, Susan; van Lier, Pol; Meeus, Wim

2017-01-01

Adolescent delinquency and identity formation have both been described in relation to the confusion, doubt, and need for individuation and autonomy faced by adolescents. While theoretical conceptualizations (e.g., Erikson, 1968; Moffitt, 1993) suggest that delinquency and identity formation might be developmentally intertwined across adolescence,…

Seroprevalence of Fasciola gigantica infection in bovines using cysteine proteinase dot enzyme-linked immunosorbent assay

PubMed Central

Kumar, Niranjan; Varghese, Anju; Solanki, J. B.

2017-01-01

Aim: The objective of the present study was to know the seroprevalence status of Fasciola gigantica infection in cattle and buffaloes using cysteine proteinase (CP) antigen in dot enzyme-linked immunosorbent assay (ELISA) format under field conditions. Materials and Methods: As per the standard protocol, the sera were collected from the blood of 112 cattle and 38 buffaloes of coastal areas of Navsari district, South Gujarat, India. The indirect ELISA was performed on the strip of nitrocellulose paper blotted with 1 µl of CP antigen, to detect F. gigantica seropositive animals. Results: The native CP of F. gigantica revealed a single visible band on 10% sodium dodecyl sulfate-polyacrylamide gel electrophoresis. There was no any noted cross-reaction between the selected antigen and sera of Gastrothylax crumenifer-infected animals in ELISA. Out of 150 screened bovines, the sera of 47 (31.33%) were found to be reactive in dot-ELISA, with a prevalence rate of 31.25% and 31.58% in cattle and buffaloes, respectively. The seropositive bovines with heavy, moderate, and light level of infection were 44.68%, 34.04%, and 21.28%, respectively (p<0.05 between heavy and light; p>0.05 between moderate and heavy or light). The share of F. gigantica seropositive and negative animals was 31% and 69%, respectively. The optical density at 450 nm of pooled sera of seropositive bovines with heavy, moderate, and light reactivity in plate-ELISA was significantly higher with field or reference ­negative sera. Conclusion: The CP-based dot-ELISA can be useful for field veterinarians for quick and timely isolation of the animals requiring urgent flukicide therapy. PMID:29184364

Shock Energy in Merging Systems: The Elephant in the Room.

NASA Astrophysics Data System (ADS)

Kewley, Lisa

2011-10-01

The relationship between shocks, star formation and the evolution of merging galaxies is not well understood. We are now poised to gain major insight in this area, thanks to the high resolution narrow-band imaging capabilities of WFC3 and recent major advances in theoretical shock and and photoionization models. Shocks and star formation in merging galaxies are regulated by fundamental physical properties of the ISM such as dust, gas density, ionized gas structure, and the presence of galactic winds and outflows. We aim to uncover the relationship between shocks, galactic winds, and the fundamental ISM properties in two famous mergers NGC 6240 and Arp 220. These two galaxies are currently transitioning from disk galaxies into spheroids and they are close enough to achieve the spatial scales required to resolve individual supernova remnants with WFC3 imaging. We propose to image NGC 6240 and Arp 220 in key shock and photoionization sensitive diagnostic lines [OII], [OIII], H-beta, [NII]+H-alpha, [SII], and {where possible} [OI] to {1} resolve the source of the ionizing radiation field {shocks versus photoionization by hot stars} at spatial scales of 25-35 pc, and {2} map the distribution of the star formation and ionized gas to search for links with merger-driven shocks and large-scale gas flows.

GlycoExtractor: a web-based interface for high throughput processing of HPLC-glycan data.

PubMed

Artemenko, Natalia V; Campbell, Matthew P; Rudd, Pauline M

2010-04-05

Recently, an automated high-throughput HPLC platform has been developed that can be used to fully sequence and quantify low concentrations of N-linked sugars released from glycoproteins, supported by an experimental database (GlycoBase) and analytical tools (autoGU). However, commercial packages that support the operation of HPLC instruments and data storage lack platforms for the extraction of large volumes of data. The lack of resources and agreed formats in glycomics is now a major limiting factor that restricts the development of bioinformatic tools and automated workflows for high-throughput HPLC data analysis. GlycoExtractor is a web-based tool that interfaces with a commercial HPLC database/software solution to facilitate the extraction of large volumes of processed glycan profile data (peak number, peak areas, and glucose unit values). The tool allows the user to export a series of sample sets to a set of file formats (XML, JSON, and CSV) rather than a collection of disconnected files. This approach not only reduces the amount of manual refinement required to export data into a suitable format for data analysis but also opens the field to new approaches for high-throughput data interpretation and storage, including biomarker discovery and validation and monitoring of online bioprocessing conditions for next generation biotherapeutics.

Biofilm formation by pathogenic Prototheca algae.

PubMed

Kwiecinski, J

2015-12-01

Prototheca microalgae are the only plants known to cause infections in humans and animals. The mechanisms of Prototheca infections are poorly understood, and no good treatments are available. Biofilms-surface-attached, three-dimensional microbial communities contributing to chronic infections-are formed by many pathogenic bacteria and fungi, but it is not known if Prototheca algae also have this ability. This study shows that various Prototheca species form biofilms composed of surface-attached cells in all growth phases, linked together by matrix containing DNA and polysaccharides. Biofilm formation was modulated by the presence of host plasma or milk. Compared to planktonic cells, Prototheca biofilms caused decreased release of IL-6 by mononuclear immune cells and responded differently to treatment with antimicrobials. Prototheca biofilms possibly contribute to chronic and hard-to-treat character of those algal infections. Prototheca algae are the only existing pathogenic plants. Almost nothing is known about mechanisms of Prototheca infections. This study identifies that, similar to pathogenic bacteria and fungi, Prototheca algae can form biofilms. These biofilms induce reduced immune cell activation relative to planktonic cells, and are also less susceptible to antimicrobials. Biofilm formation by Prototheca could be the first in vitro correlate of pathogenicity, opening a new research field for this pathogen. © 2015 The Society for Applied Microbiology.

Slit–Robo signalling in heart development

PubMed Central

Zhao, Juanjuan; Mommersteeg, Mathilda T M

2018-01-01

Abstract The Slit ligands and their Robo receptors are well-known for their roles during axon guidance in the central nervous system but are still relatively unknown in the cardiac field. However, data from different animal models suggest a broad involvement of the pathway in many aspects of heart development, from cardiac cell migration and alignment, lumen formation, chamber formation, to the formation of the ventricular septum, semilunar and atrioventricular valves, caval veins, and pericardium. Absence of one or more of the genes in the pathway results in defects ranging from bicuspid aortic valves to ventricular septal defects and abnormal venous connections to the heart. Congenital heart defects are the most common congenital malformations found in life new-born babies and progress in methods for large scale human genetic testing has significantly enhanced the identification of new causative genes involved in human congenital heart disease. Recently, loss of function variants in ROBO1 have also been linked to ventricular septal defects and tetralogy of Fallot in patients. Here, we will give an overview of the role of the Slit–Robo signalling pathway in Drosophila, zebrafish, and mouse heart development. The extent of these data warrant further attention on the SLIT–ROBO signalling pathway as a candidate for an array of human congenital heart defects. PMID:29538649

Intermittent behavior of galactic dynamo activities

NASA Technical Reports Server (NTRS)

Ko, C. M.; Parker, E. N.

1989-01-01

Recent observations by Beck and Golla of far-infrared and radio continuum emission from nearby spiral galaxies suggest that the galactic magnetic field strength is connected to the current star formation rate. The role of star formation on the generation of large-scale galactic magnetic field is studied in this paper. Using a simple galactic model, it is shown how the galactic dynamo depends strongly on the turbulent velocity of the interstellar medium. When the star formation efficiency is high, the ISM is churned which in turn amplifies the galactic magnetic field. Between active star formation epochs, the magnetic field is in dormant state and decays at a negligible rate. If density waves trigger star formation, then they also turn on the otherwise dormant dynamo.

In vitro cross-linking of elastin peptides and molecular characterization of the resultant biomaterials.

PubMed

Heinz, Andrea; Ruttkies, Christoph K H; Jahreis, Günther; Schräder, Christoph U; Wichapong, Kanin; Sippl, Wolfgang; Keeley, Fred W; Neubert, Reinhard H H; Schmelzer, Christian E H

2013-04-01

Elastin is a vital protein and the major component of elastic fibers which provides resilience to many vertebrate tissues. Elastin's structure and function are influenced by extensive cross-linking, however, the cross-linking pattern is still unknown. Small peptides containing reactive allysine residues based on sequences of cross-linking domains of human elastin were incubated in vitro to form cross-links characteristic of mature elastin. The resultant insoluble polymeric biomaterials were studied by scanning electron microscopy. Both, the supernatants of the samples and the insoluble polymers, after digestion with pancreatic elastase or trypsin, were furthermore comprehensively characterized on the molecular level using MALDI-TOF/TOF mass spectrometry. MS(2) data was used to develop the software PolyLinX, which is able to sequence not only linear and bifunctionally cross-linked peptides, but for the first time also tri- and tetrafunctionally cross-linked species. Thus, it was possible to identify intra- and intermolecular cross-links including allysine aldols, dehydrolysinonorleucines and dehydromerodesmosines. The formation of the tetrafunctional cross-link desmosine or isodesmosine was unexpected, however, could be confirmed by tandem mass spectrometry and molecular dynamics simulations. The study demonstrated that it is possible to produce biopolymers containing polyfunctional cross-links characteristic of mature elastin from small elastin peptides. MALDI-TOF/TOF mass spectrometry and the newly developed software PolyLinX proved suitable for sequencing of native cross-links in proteolytic digests of elastin-like biomaterials. The study provides important insight into the formation of native elastin cross-links and represents a considerable step towards the characterization of the complex cross-linking pattern of mature elastin. Copyright © 2013 Elsevier B.V. All rights reserved.

Large-scale volcanism associated with coronae on Venus

NASA Technical Reports Server (NTRS)

Roberts, K. Magee; Head, James W.

1993-01-01

The formation and evolution of coronae on Venus are thought to be the result of mantle upwellings against the crust and lithosphere and subsequent gravitational relaxation. A variety of other features on Venus have been linked to processes associated with mantle upwelling, including shield volcanoes on large regional rises such as Beta, Atla and Western Eistla Regiones and extensive flow fields such as Mylitta and Kaiwan Fluctus near the Lada Terra/Lavinia Planitia boundary. Of these features, coronae appear to possess the smallest amounts of associated volcanism, although volcanism associated with coronae has only been qualitatively examined. An initial survey of coronae based on recent Magellan data indicated that only 9 percent of all coronae are associated with substantial amounts of volcanism, including interior calderas or edifices greater than 50 km in diameter and extensive, exterior radial flow fields. Sixty-eight percent of all coronae were found to have lesser amounts of volcanism, including interior flooding and associated volcanic domes and small shields; the remaining coronae were considered deficient in associated volcanism. It is possible that coronae are related to mantle plumes or diapirs that are lower in volume or in partial melt than those associated with the large shields or flow fields. Regional tectonics or variations in local crustal and thermal structure may also be significant in determining the amount of volcanism produced from an upwelling. It is also possible that flow fields associated with some coronae are sheet-like in nature and may not be readily identified. If coronae are associated with volcanic flow fields, then they may be a significant contributor to plains formation on Venus, as they number over 300 and are widely distributed across the planet. As a continuation of our analysis of large-scale volcanism on Venus, we have reexamined the known population of coronae and assessed quantitatively the scale of volcanism associated with them. In particular, we have examined the percentage of coronae associated with volcanic flow fields (i.e., a collection of digitate or sheet-like lava flows extending from the corona interior or annulus); the range in scale of these flow fields; the variations in diameter, structure and stratigraphy of coronae with flow fields; and the global distribution of coronae associated with flow fields.

A note on deep space optical communication link parameters

NASA Technical Reports Server (NTRS)

Dolinar, S. J.; Yuen, J. H.

1982-01-01

Topical communication in the context of a deep space communication link. Communication link analysis at the optical frequencies differs significantly from that at microwave frequencies such as the traditional S and X-bands used in deep space applications, due to the different technology of transmitter, antenna, modulators, and receivers. In addition, the important role of quantum noise in limiting system performance is quite different than that of thermal noise. The optical link design is put in a design control table format similar to a microwave telecom link design. Key considerations unique to the optical link are discussed.

Data Science Bowl Launched to Improve Lung Cancer Screening | Division of Cancer Prevention

Cancer.gov

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Characteristics of dune-paleosol-sequences in Fuerteventura. - What should be questioned?

NASA Astrophysics Data System (ADS)

Faust, Dominik; Willkommen, Tobias; Yanes, Yurena; Richter, David; Zöller, Ludwig

2013-04-01

Characteristics of dune-paleosol-sequences in Fuerteventura. - What should be questioned? Dominik Faust, TU Dresden, Germany Tobias Willkommen, TU Dresden, Germany Yurena Yanes, CSIC Granada/Cincinatti, Spain/USA David Richter, TU Dresden, Germany Ludwig Zöller, Uni Bayreuth, Germany The northern part of Fuerteventura is characterized by large dune fields. We investigated dune-paleosol-sequences in four pits to establish a robust stratigraphy and to propose a standard section. An interaction of processes like dune formation, soil formation and redeposition of soils and sand are most important to understand the principles of landscape development in the study area. To our mind a process cycle seem to be important: First climbing-dunes are formed by sand of shelf origin. Then soil formation could have taken place. Soil and/or sand were then eroded and deposited at toe slope position. This material in turn is the source of new sand supply and dune formation. The described cycle may be repeated several times and this ping-pong-process holds on. The results are sections composed of dune layers, paleosols and colluvial material interbedded. Fundamental questions still remain unanswered: Is climate change responsable for changes in process combination (e.g. from dune formation to soil formation)? Or are these features due to divergence phenomenon, where different effects/results (dune and soils) may be linked to similar causes (here: climate)? Assuming that different features (soils and dunes) were formed under one climate, increasing soil forming intensity could be mainly a function of decreasing sand supply. This in turn could be caused by reduced sand production (s. ZECH et al. accepted). However geochemical data and mollusc assemblages point to changing environments in space and even climate modifications in time.

Analyzing the texture changes in the quantitative phase maps of adipocytes

NASA Astrophysics Data System (ADS)

Roitshtain, Darina; Sharabani-Yosef, Orna; Gefen, Amit; Shaked, Natan T.

2016-03-01

We present a new analysis tool for studying texture changes in the quantitative phase maps of live cells acquired by wide-field interferometry. The sensitivity of wide-field interferometry systems to small changes in refractive index enables visualizing cells and inner cell organelles without the using fluorescent dyes or other cell-invasive approaches, which may affect the measurement and require external labeling. Our label-free texture-analysis tool is based directly on the optical path delay profile of the sample and does not necessitate decoupling refractive index and thickness in the cell quantitative phase profile; thus, relevant parameters can be calculated using a single-frame acquisition. Our experimental system includes low-coherence wide-field interferometer, combined with simultaneous florescence microscopy system for validation. We used this system and analysis tool for studying lipid droplets formation in adipocytes. The latter demonstration is relevant for various cellular functions such as lipid metabolism, protein storage and degradation to viral replication. These processes are functionally linked to several physiological and pathological conditions, including obesity and metabolic diseases. Quantification of these biological phenomena based on the texture changes in the cell phase map has a potential as a new cellular diagnosis tool.

Metazen – metadata capture for metagenomes

PubMed Central

2014-01-01

Background As the impact and prevalence of large-scale metagenomic surveys grow, so does the acute need for more complete and standards compliant metadata. Metadata (data describing data) provides an essential complement to experimental data, helping to answer questions about its source, mode of collection, and reliability. Metadata collection and interpretation have become vital to the genomics and metagenomics communities, but considerable challenges remain, including exchange, curation, and distribution. Currently, tools are available for capturing basic field metadata during sampling, and for storing, updating and viewing it. Unfortunately, these tools are not specifically designed for metagenomic surveys; in particular, they lack the appropriate metadata collection templates, a centralized storage repository, and a unique ID linking system that can be used to easily port complete and compatible metagenomic metadata into widely used assembly and sequence analysis tools. Results Metazen was developed as a comprehensive framework designed to enable metadata capture for metagenomic sequencing projects. Specifically, Metazen provides a rapid, easy-to-use portal to encourage early deposition of project and sample metadata. Conclusions Metazen is an interactive tool that aids users in recording their metadata in a complete and valid format. A defined set of mandatory fields captures vital information, while the option to add fields provides flexibility. PMID:25780508

Metazen - metadata capture for metagenomes.

PubMed

Bischof, Jared; Harrison, Travis; Paczian, Tobias; Glass, Elizabeth; Wilke, Andreas; Meyer, Folker

2014-01-01

As the impact and prevalence of large-scale metagenomic surveys grow, so does the acute need for more complete and standards compliant metadata. Metadata (data describing data) provides an essential complement to experimental data, helping to answer questions about its source, mode of collection, and reliability. Metadata collection and interpretation have become vital to the genomics and metagenomics communities, but considerable challenges remain, including exchange, curation, and distribution. Currently, tools are available for capturing basic field metadata during sampling, and for storing, updating and viewing it. Unfortunately, these tools are not specifically designed for metagenomic surveys; in particular, they lack the appropriate metadata collection templates, a centralized storage repository, and a unique ID linking system that can be used to easily port complete and compatible metagenomic metadata into widely used assembly and sequence analysis tools. Metazen was developed as a comprehensive framework designed to enable metadata capture for metagenomic sequencing projects. Specifically, Metazen provides a rapid, easy-to-use portal to encourage early deposition of project and sample metadata. Metazen is an interactive tool that aids users in recording their metadata in a complete and valid format. A defined set of mandatory fields captures vital information, while the option to add fields provides flexibility.

Effect of magnetic reconnection in stellar plasma

NASA Astrophysics Data System (ADS)

Hammoud, M.; El Eid, M.; Darwish, M.

2017-06-01

An important phenomenon in Astrophysics is the process of magnetic reconnection (MGR), which is envisaged to understand the solar flares, coronal mass ejection, interaction of the solar wind with the Earth’s magnetic field (so called geomagnetic storm) and other phenomena. In addition, it plays a role in the formation of stars. MGR involves topological change of a set of magnetic field lines leading to a new equilibrium configuration of lower magnetic energy. The MGR is basically described in the framework of the Maxwell’s equations linked to Navier-Stockes equations. Nevertheless, many details are still not understood. In this paper, we investigate the MGR process in the framework of the Magnetohydrodynamic (MHD) model of a single conducting fluid using a modern powerful computational tool (OpenFOAM). We will show that the MGR process takes place only if resistivity exists. However, despite the high conductivity of the plasma, resistivity becomes effective in a very thin layer generating sharp gradients of the magnetic field, and thus accelerating the reconnection process. The net effect of MGR is that magnetic energy is converted into thermal and kinetic energies leading to heating and acceleration of charged particles. The Sun’s coronal ejection is an example of the MGR process.

Gamma-band activation predicts both associative memory and cortical plasticity

PubMed Central

Headley, Drew B.; Weinberger, Norman M.

2011-01-01

Gamma-band oscillations are a ubiquitous phenomenon in the nervous system and have been implicated in multiple aspects of cognition. In particular, the strength of gamma oscillations at the time a stimulus is encoded predicts its subsequent retrieval, suggesting that gamma may reflect enhanced mnemonic processing. Likewise, activity in the gamma-band can modulate plasticity in vitro. However, it is unclear whether experience-dependent plasticity in vivo is also related to gamma-band activation. The aim of the present study is to determine whether gamma activation in primary auditory cortex modulates both the associative memory for an auditory stimulus during classical conditioning and its accompanying specific receptive field plasticity. Rats received multiple daily sessions of single tone/shock trace and two-tone discrimination conditioning, during which local field potentials and multiunit discharges were recorded from chronically implanted electrodes. We found that the strength of tone-induced gamma predicted the acquisition of associative memory 24 h later, and ceased to predict subsequent performance once asymptote was reached. Gamma activation also predicted receptive field plasticity that specifically enhanced representation of the signal tone. This concordance provides a long-sought link between gamma oscillations, cortical plasticity and the formation of new memories. PMID:21900554

Molecular simulations of self-assembling bio-inspired supramolecular systems and their connection to experiments

PubMed Central

Patmanidis, Ilias

2018-01-01

In bionanotechnology, the field of creating functional materials consisting of bio-inspired molecules, the function and shape of a nanostructure only appear through the assembly of many small molecules together. The large number of building blocks required to define a nanostructure combined with the many degrees of freedom in packing small molecules has long precluded molecular simulations, but recent advances in computational hardware as well as software have made classical simulations available to this strongly expanding field. Here, we review the state of the art in simulations of self-assembling bio-inspired supramolecular systems. We will first discuss progress in force fields, simulation protocols and enhanced sampling techniques using recent examples. Secondly, we will focus on efforts to enable the comparison of experimentally accessible observables and computational results. Experimental quantities that can be measured by microscopy, spectroscopy and scattering can be linked to simulation output either directly or indirectly, via quantum mechanical or semi-empirical techniques. Overall, we aim to provide an overview of the various computational approaches to understand not only the molecular architecture of nanostructures, but also the mechanism of their formation. PMID:29688238

Beyond Failure: Potentially Mitigating Failed Author Searches in the Online Library Catalog through the Use of Linked Data

ERIC Educational Resources Information Center

Moulaison, Heather Lea; Stanley, Susan Nicole

2013-01-01

Linked data stores house vetted content that can supplement the information available through online library catalogs, potentially mitigating failed author searches if information about the author exists in linked data formats. In this case study, a total of 689 failed author index queries from a large Midwestern academic library's online library…

The Effects of Differential Training Procedures on Linked Perceptual Class Formation

ERIC Educational Resources Information Center

Fields, Lanny; Tittelbach, Danielle; Shamoun, Kimberly; Watanabe, Mari; Fitzer, Adrienne; Matneja, Priya

2007-01-01

When the stimuli in one perceptual class (A') become related to the stimuli in another perceptual class (B'), the two are functioning as a single "linked perceptual class". A common linked perceptual class would be the sounds of a person's voice (class A') and the pictures of that person (class B'). Such classes are ubiquitous in real…

Optimizing Linked Perceptual Class Formation and Transfer of Function

ERIC Educational Resources Information Center

Fields, Lanny; Garruto, Michelle

2009-01-01

A linked perceptual class consists of two distinct perceptual classes, A' and B', the members of which have become related to each other. For example, a linked perceptual class might be composed of many pictures of a woman (one perceptual class) and the sounds of that woman's voice (the other perceptual class). In this case, any sound of the…

A high speed telemetry data link for an autonomous roving vehicle

NASA Technical Reports Server (NTRS)

Cipolle, D. J.

1980-01-01

A data link system used on a prototype autonomous roving vehicle is described. This system provides a means of acquiring, formatting, and transmitting information on board the vehicle to a controlling computer. Included is a statement of requirements and the design philosophy. Additionally, interfacing with the rover systems is discussed, along with the overall performance of the telemetry link.

Post-translational control of collagen fibrillogenesis in mineralizing cultures of chick osteoblasts

NASA Technical Reports Server (NTRS)

Gerstenfeld, L. C.; Riva, A.; Hodgens, K.; Eyre, D. R.; Landis, W. J.

1993-01-01

Cultured osteoblasts from chick embryo calvaria were used as a model system to investigate the post-translational extracellular mechanisms controlling the macroassembly of collagen fibrils. The results of these studies demonstrated that cultured osteoblasts secreted a collagenous extracellular matrix that assembled and mineralized in a defined temporal and spatial sequence. The assembly of collagen occurred in a polarized fashion, such that successive orthogonal arrays of fibrils formed between successive cell layers proceeding from the culture surface toward the media. Mineralization followed in the same manner, being observed first in the deepest and oldest fibril layers. Collagen fibrillogenesis, the kinetics of cross-link formation, and collagen stability in the extracellular matrix of the cultures were examined over a 30 day culture period. Between days 8 and 12 in culture, collagen fibril diameters increased from < 30 nm to an average of 30-45 nm. Thereafter, diameters ranged in size from 20 to 200 nm. Quantitation of the collagen cross-linking residues, hydroxylysyl pyridinoline (HP) and lysyl pyridinoline (LP), showed that these mature cross-links increased from undetectable levels to concentrations found in normal chick bone. Analysis of the kinetics of their formation by pulse-chase labeling the cultures with [3H]lysine showed a doubling time of approximately 5 days. The relationships between cross-link formation, fibrillogenesis, and collagen stability were examined in cultures treated with beta-aminopropionitrile (beta-APN), a potent inhibitor of lysyl oxidase and cross-link formation. In beta-APN-treated cultures, total collagen synthesis was increased twofold, with no change in mRNA levels for type I collagen, whereas the amount of collagen accumulated in the cell layer was decreased by 50% and mineral deposition was reduced. The rate of collagen retention in the matrix was assessed by pulse-chase analysis of [3H]proline over a 16 day period in control and beta-APN-treated cultures. In control cultures, about 20% of the labeled collagen was lost from the cell layers over a 16 day period compared with > 80% in the presence of beta-APN. The beta-APN-treated cultures also showed a wider diversity of fibril diameters with a median in the > 45-60 nm range. In summary, these data suggest that cross-linking and assembly of collagen fibrils secreted by osteoblasts in vitro occur in a fashion similar to that found in vivo. The rate of cross-link formation is relatively constant and may be correlated with increasing collagen mass.(ABSTRACT TRUNCATED AT 400 WORDS).

RNA polymerase pausing and nascent RNA structure formation are linked through clamp domain movement

PubMed Central

Hein, Pyae P.; Kolb, Kellie E.; Windgassen, Tricia; Bellecourt, Michael J.; Darst, Seth A.; Mooney, Rachel A.; Landick, Robert

2014-01-01

The rates of RNA synthesis and nascent RNA folding into biologically active structures are linked via pausing by RNA polymerase (RNAP). Structures that form within the RNA exit channel can increase pausing by interacting with bacterial RNAP or decrease pausing by preventing backtracking. Conversely, pausing is required for proper folding of some RNAs. Opening of the RNAP clamp domain is proposed to mediate some effects of nascent RNA structures. However, the connections among RNA structure formation, clamp movement, and catalytic activity remain uncertain. We assayed exit-channel structure formation in Escherichia coli RNAP together with disulfide crosslinks that favor closed or open clamp conformations and found that clamp position directly influences RNA structure formation and catalytic activity. We report that exit-channel RNA structures slow pause escape by favoring clamp opening and through interactions with the flap that slow translocation. PMID:25108353

Regulatory link between steryl ester formation and hydrolysis in the yeast Saccharomyces cerevisiae.

PubMed

Ploier, Birgit; Korber, Martina; Schmidt, Claudia; Koch, Barbara; Leitner, Erich; Daum, Günther

2015-07-01

Steryl esters and triacylglycerols are the major storage lipids of the yeast Saccharomyces cerevisiae. Steryl esters are formed in the endoplasmic reticulum by the two acyl-CoA:sterol acyltransferases Are1p and Are2p, whereas steryl ester hydrolysis is catalyzed by the three steryl ester hydrolases Yeh1p, Yeh2p and Tgl1p. To shed light on the regulatory link between steryl ester formation and hydrolysis in the maintenance of cellular sterol and free fatty acid levels we employed yeast mutants which lacked the enzymes catalyzing the degradation of steryl esters. These studies revealed feedback regulation of steryl ester formation by steryl ester hydrolysis although in a Δtgl1Δyeh1Δyeh2 triple mutant the gene expression levels of ARE1 and ARE2 as well as protein levels and stability of Are1p and Are2p were not altered. Nevertheless, the capacity of the triple mutant to synthesize steryl esters was significantly reduced as shown by in vitro and in vivo labeling of lipids with [(14)C]oleic acid and [(14)C]acetate. Enzymatic analysis revealed that inhibition of steryl ester formation occurred at the enzyme level. As the amounts and the formation of sterols and fatty acids were also decreased in the triple mutant we concluded that defects in steryl ester hydrolysis also caused feedback inhibition on the formation of sterols and fatty acids which serve as precursors for steryl ester formation. In summary, this study demonstrates a regulatory link within the steryl ester metabolic network which contributes to non-polar lipid homeostasis in yeast cells. Copyright © 2014 Elsevier B.V. All rights reserved.

Epigenetic formation of amethyst-bearing geodes from Los Catalanes gemological district, Artigas, Uruguay, southern Paraná Magmatic Province

NASA Astrophysics Data System (ADS)

Duarte, L. C.; Hartmann, L. A.; Vasconcellos, M. A. Z.; Medeiros, J. T. N.; Theye, T.

2009-07-01

Giant geodes (up to 4 m long) in the massive central portions of altered basalt lavas from the Paraná Magmatic Province, southern Brazil and Uruguay, form a world-class source of amethyst and agate. Although the origin of the cavities has been ascribed to degassing of the lava at > 1150 °C, field evidence is conclusive that the giant amethyst-agate-filled geodes were formed by hydrothermal processes at low temperatures. We propose an epigenetic and hydrothermal model for the origin of giant geodes. This model includes hydrothermal brecciation during an early brittle stage and the late formation of the cavities (geodes). In the brittle stage an overpressured aqueous fluid affected the basalt in a P, T field delimited by temperatures between 100 and 150 °C and vapor pressures between 1.2 and 5.5 bar. The fluids were capable of lifting the roof and fracturing the host rock along new subhorizontal and subvertical fractures and breccias in the massive lava. The formation of these structures occurred at shallow depths, unit-by-unit. To open the cavities, dissolution of the now altered basalt to clay minerals is necessary. The process is closely linked to the highest alteration grade of mineralized lavas in Los Catalanes gemological district. Dissolution processes are observed in micrometer-scale in the studied basalts. The primary mineralogy, consisting of labradorite (± andesine) +augite + pigeonite + mesostasis (K-rich), was altered during the interaction of large volumes of hot aqueous fluid with the rock. The alteration of pigeonite and its replacement by smectite is observed around the cavities, followed by the precipitation of amorphous silica and microcrystalline quartz in clay-rich sites. Associated zeolites (heulandite + clinoptilolite) fill the newly formed cavities in progressive stages of hydrothermal alteration. Our data indicate that the temperatures were less than 200 °C and probably less than 150 °C; cavity formation occurred after alteration of the basalt to more than 60 vol.% clay minerals. We thus suggest that cavities related to geode formation are of epigenetic origin.

The EDGE-CALIFA survey: the influence of galactic rotation on the molecular depletion time across the Hubble sequence

NASA Astrophysics Data System (ADS)

Colombo, D.; Kalinova, V.; Utomo, D.; Rosolowsky, E.; Bolatto, A. D.; Levy, R. C.; Wong, T.; Sanchez, S. F.; Leroy, A. K.; Ostriker, E.; Blitz, L.; Vogel, S.; Mast, D.; García-Benito, R.; Husemann, B.; Dannerbauer, H.; Ellmeier, L.; Cao, Y.

2018-04-01

We present a kpc-scale analysis of the relationship between the molecular depletion time (τ^mol_dep) and the orbital time (τorb) across the field of 39 face-on local galaxies, selected from the EDGE-CALIFA sample. We find that, on average, 5 per cent of the available molecular gas is converted into stars per orbital time, or τ^mol_dep˜ 20 τ_orb. The resolved relation shows a scatter of ˜0.5 dex. The scatter is ascribable to galaxies of different morphologies that follow different τ^mol_dep-τorb relations which decrease in steepness from early- to late types. The morphologies appear to be linked with the star formation rate surface density, the molecular depletion time, and the orbital time, but they do not correlate with the molecular gas content of the galaxies in our sample. We speculate that in our molecular gas rich, early-type galaxies, the morphological quenching (in particular the disc stabilization via shear), rather than the absence of molecular gas, is the main factor responsible for their current inefficient star formation.

How to Display Hazards and other Scientific Data Using Google Maps

NASA Astrophysics Data System (ADS)

Venezky, D. Y.; Fee, J. M.

2007-12-01

The U.S. Geological Survey's (USGS) Volcano Hazard Program (VHP) is launching a map-based interface to display hazards information using the Google® Map API (Application Program Interface). Map-based interfaces provide a synoptic view of data, making patterns easier to detect and allowing users to quickly ascertain where hazards are in relation to major population and infrastructure centers. Several map-based interfaces are now simple to run on a web server, providing ideal platforms for sharing information with colleagues, emergency managers, and the public. There are three main steps to making data accessible on a map-based interface; formatting the input data, plotting the data on the map, and customizing the user interface. The presentation, "Creating Geospatial RSS and ATOM feeds for Map-based Interfaces" (Fee and Venezky, this session), reviews key features for map input data. Join us for this presentation on how to plot data in a geographic context and then format the display with images, custom markers, and links to external data. Examples will show how the VHP Volcano Status Map was created and how to plot a field trip with driving directions.

Use of silicon carbide sludge to form porous alkali-activated materials for insulating application

NASA Astrophysics Data System (ADS)

Prud'homme, E.; Joussein, E.; Rossignol, S.

2015-07-01

One of the objectives in the field of alkali-activated materials is the development of materials having greater thermal performances than conventional construction materials such as aerated concrete. The aim of this paper is to present the possibility to obtain controlled porosity and controlled thermal properties with geopolymer materials including a waste like silicon carbide sludge. The porosity is created by the reaction of free silicon contains in silicon carbide sludge leading to the formation of hydrogen. Two possible ways are investigated to control the porosity: modification of mixture formulation and additives introduction. The first way is the most promising and allowed the formation of materials presenting the same density but various porosities, which shows that the material is adaptable to the application. The insulation properties are logically linked to the porosity and density of materials. A lower value of thermal conductivity of 0.075 W.m-1.K-1 can be reached for a material with a low density of 0.27 g.cm-3. These characteristics are really good for a mineral-based material which always displays non-negligible resistance to manipulation.

Formation and Characterization of Silver Nanoparticle Composite with Poly(p-Br/F-phenylsilane).

PubMed

Roh, Sung-Hee; Noh, Ji Eun; Woo, Hee-Gweon; Cho, Myong-Shik; Sohn, Honglae

2015-02-01

The one-pot production and structural characterization of composites of silver nanoparticles with poly(p-Br/F-phenylsilane), Br/F-PPS, have been performed. The conversion of Ag+ ions to stable Ag0 nanoparticles is mediated by the copolymer Br/F-PPS having both possibly reactive Si-H bonds in the polymer backbone and C-Br bonds in the substituents along with relatively inert C-F bonds. Transmission electron microscopy and field emission scanning electron microscopy analyses show the formation of the composites where silver nanoparticles (less than 30 nm of size) are well dispersed over the Br/F-PPS matrix. X-ray diffraction patterns are consistent with that for face-centered-cubic typed silver. The polymer solubility in toluene implys that the cleavage of C-Br bond and the Si-F dative bonding may not be occurred appreciably at ambient temperature. Nonetheless, thermogravimetric analysis data suggest that some sort of cross-linking could take place at high temperature. Most of the silver particles undergo macroscopic aggregation without Br/F-PPS, which indicates that the polysilane is necessary for stabilizing the silver nanoparticles.

Improved interface growth and enhanced flux pinning in YBCO films deposited on an advanced IBAD-MgO based template

NASA Astrophysics Data System (ADS)

Khan, M. Z.; Zhao, Y.; Wu, X.; Malmivirta, M.; Huhtinen, H.; Paturi, P.

2018-02-01

The growth mechanism is studied from the flux pinning point of view in small-scale YBa2Cu3O6+x (YBCO) thin films deposited on a polycrystalline hastelloy with advanced IBAD-MgO based buffer layer architecture. When compared the situation with YBCO films grown on single crystal substrates, the most critical issues that affect the suitable defect formation and thus the optimal vortex pinning landscape, have been studied as a function of the growth temperature and the film thickness evolution. We can conclude that the best critical current property in a wide applied magnetic field range is observed in films grown at relatively low temperature and having intermediate thickness. These phenomena are linked to the combination of the improved interface growth, to the film thickness related crystalline relaxation and to the formation of linear array of edge dislocations that forms the low-angle grain boundaries through the entire film thickness and thus improve the vortex pinning properties. Hence, the optimized buffer layer structure proved to be particularly suitable for new coated conductor solutions.

An integrated theory of attention and decision making in visual signal detection.

PubMed

Smith, Philip L; Ratcliff, Roger

2009-04-01

The simplest attentional task, detecting a cued stimulus in an otherwise empty visual field, produces complex patterns of performance. Attentional cues interact with backward masks and with spatial uncertainty, and there is a dissociation in the effects of these variables on accuracy and on response time. A computational theory of performance in this task is described. The theory links visual encoding, masking, spatial attention, visual short-term memory (VSTM), and perceptual decision making in an integrated dynamic framework. The theory assumes that decisions are made by a diffusion process driven by a neurally plausible, shunting VSTM. The VSTM trace encodes the transient outputs of early visual filters in a durable form that is preserved for the time needed to make a decision. Attention increases the efficiency of VSTM encoding, either by increasing the rate of trace formation or by reducing the delay before trace formation begins. The theory provides a detailed, quantitative account of attentional effects in spatial cuing tasks at the level of response accuracy and the response time distributions. (c) 2009 APA, all rights reserved

Satb2 determines miRNA expression and long-term memory in the adult central nervous system.

PubMed

Jaitner, Clemens; Reddy, Chethan; Abentung, Andreas; Whittle, Nigel; Rieder, Dietmar; Delekate, Andrea; Korte, Martin; Jain, Gaurav; Fischer, Andre; Sananbenesi, Farahnaz; Cera, Isabella; Singewald, Nicolas; Dechant, Georg; Apostolova, Galina

2016-11-29

SATB2 is a risk locus for schizophrenia and encodes a DNA-binding protein that regulates higher-order chromatin configuration. In the adult brain Satb2 is almost exclusively expressed in pyramidal neurons of two brain regions important for memory formation, the cerebral cortex and the CA1-hippocampal field. Here we show that Satb2 is required for key hippocampal functions since deletion of Satb2 from the adult mouse forebrain prevents the stabilization of synaptic long-term potentiation and markedly impairs long-term fear and object discrimination memory. At the molecular level, we find that synaptic activity and BDNF up-regulate Satb2, which itself binds to the promoters of coding and non-coding genes. Satb2 controls the hippocampal levels of a large cohort of miRNAs, many of which are implicated in synaptic plasticity and memory formation. Together, our findings demonstrate that Satb2 is critically involved in long-term plasticity processes in the adult forebrain that underlie the consolidation and stabilization of context-linked memory.

Multimodal sensory responses of nucleus reticularis gigantocellularis and the responses' relation to cortical and motor activation.

PubMed

Martin, Eugene M; Pavlides, Constantine; Pfaff, Donald

2010-05-01

The connectivity of large neurons of the nucleus reticularis gigantocellularis (NRGc) in the medullary reticular formation potentially allows both for the integration of stimuli, in several modalities, that would demand immediate action, and for coordinated activation of cortical and motoric activity. We have simultaneously recorded cortical local field potentials, neck muscle electromyograph (EMG), and the neural activity of medullary NRGc neurons in unrestrained, unanesthetized rats to determine whether the activity of the NRGc is consistent with the modulation of general arousal. We observed excitatory responses of individual NRGc neurons to all modalities tested: tactile, visual, auditory, vestibular, and olfactory. Excitation was directly linked to increases in neck muscle EMG amplitude and corresponded with increases in the power of fast oscillations (30 to 80 Hz) of cortical activity and decreases in the power of slow oscillations (2 to 8 Hz). Because these reticular formation neurons can respond to broad ranges of stimuli with increased firing rates associated with the initiation of behavioral responses, we infer that they are part of an elementary "first responder" CNS arousal mechanism.

Multimodal Sensory Responses of Nucleus Reticularis Gigantocellularis and the Responses' Relation to Cortical and Motor Activation

PubMed Central

Pavlides, Constantine; Pfaff, Donald

2010-01-01

The connectivity of large neurons of the nucleus reticularis gigantocellularis (NRGc) in the medullary reticular formation potentially allows both for the integration of stimuli, in several modalities, that would demand immediate action, and for coordinated activation of cortical and motoric activity. We have simultaneously recorded cortical local field potentials, neck muscle electromyograph (EMG), and the neural activity of medullary NRGc neurons in unrestrained, unanesthetized rats to determine whether the activity of the NRGc is consistent with the modulation of general arousal. We observed excitatory responses of individual NRGc neurons to all modalities tested: tactile, visual, auditory, vestibular, and olfactory. Excitation was directly linked to increases in neck muscle EMG amplitude and corresponded with increases in the power of fast oscillations (30 to 80 Hz) of cortical activity and decreases in the power of slow oscillations (2 to 8 Hz). Because these reticular formation neurons can respond to broad ranges of stimuli with increased firing rates associated with the initiation of behavioral responses, we infer that they are part of an elementary “first responder” CNS arousal mechanism. PMID:20181730

Texturing of high T(sub c) superconducting polycrystalline fibers/wires by laser-driven directional solidification in an thermal gradient

NASA Technical Reports Server (NTRS)

Varshney, Usha; Eichelberger, B. Davis, III

1995-01-01

This paper summarizes the technique of laser-driven directional solidification in a controlled thermal gradient of yttria stabilized zirconia core coated Y-Ba-Cu-O materials to produce textured high T(sub c) superconducting polycrystalline fibers/wires with improved critical current densities in the extended range of magnetic fields at temperatures greater than 77 K. The approach involves laser heating to minimize phase segregation by heating very rapidly through the two-phase incongruent melt region to the single phase melt region and directionally solidifying in a controlled thermal gradient to achieve highly textured grains in the fiber axis direction. The technique offers a higher grain growth rate and a lower thermal budget compared with a conventional thermal gradient and is amenable as a continuous process for improving the J(sub c) of high T(sub c) superconducting polycrystalline fibers/wires. The technique has the advantage of suppressing weak-link behavior by orientation of crystals, formation of dense structures with enhanced connectivity, formation of fewer and cleaner grain boundaries, and minimization of phase segregation in the incongruent melt region.

Induction of Caveolae in the Apical Plasma Membrane of Madin-Darby Canine Kidney Cells

PubMed Central

Verkade, Paul; Harder, Thomas; Lafont, Frank; Simons, Kai

2000-01-01

In this paper, we have analyzed the behavior of antibody cross-linked raft-associated proteins on the surface of MDCK cells. We observed that cross-linking of membrane proteins gave different results depending on whether cross-linking occurred on the apical or basolateral plasma membrane. Whereas antibody cross-linking induced the formation of large clusters on the basolateral membrane, resembling those observed on the surface of fibroblasts (Harder, T., P. Scheiffele, P. Verkade, and K. Simons. 1998. J. Cell Biol. 929–942), only small (∼100 nm) clusters formed on the apical plasma membrane. Cross-linked apical raft proteins e.g., GPI-anchored placental alkaline phosphatase (PLAP), influenza hemagglutinin, and gp114 coclustered and were internalized slowly (∼10% after 60 min). Endocytosis occurred through surface invaginations that corresponded in size to caveolae and were labeled with caveolin-1 antibodies. Upon cholesterol depletion the internalization of PLAP was completely inhibited. In contrast, when a non-raft protein, the mutant LDL receptor LDLR-CT22, was cross-linked, it was excluded from the clusters of raft proteins and was rapidly internalized via clathrin-coated pits. Since caveolae are normally present on the basolateral membrane but lacking from the apical side, our data demonstrate that antibody cross-linking induced the formation of caveolae, which slowly internalized cross-linked clusters of raft-associated proteins. PMID:10684254

Effectiveness of Link Prediction for Face-to-Face Behavioral Networks

PubMed Central

Tsugawa, Sho; Ohsaki, Hiroyuki

2013-01-01

Research on link prediction for social networks has been actively pursued. In link prediction for a given social network obtained from time-windowed observation, new link formation in the network is predicted from the topology of the obtained network. In contrast, recent advances in sensing technology have made it possible to obtain face-to-face behavioral networks, which are social networks representing face-to-face interactions among people. However, the effectiveness of link prediction techniques for face-to-face behavioral networks has not yet been explored in depth. To clarify this point, here we investigate the accuracy of conventional link prediction techniques for networks obtained from the history of face-to-face interactions among participants at an academic conference. Our findings were (1) that conventional link prediction techniques predict new link formation with a precision of 0.30–0.45 and a recall of 0.10–0.20, (2) that prolonged observation of social networks often degrades the prediction accuracy, (3) that the proposed decaying weight method leads to higher prediction accuracy than can be achieved by observing all records of communication and simply using them unmodified, and (4) that the prediction accuracy for face-to-face behavioral networks is relatively high compared to that for non-social networks, but not as high as for other types of social networks. PMID:24339956

Non-bridging Oxygen and Five-coordinated Aluminum in Aluminosilicate Glasses: A Cation Field Strength Study

NASA Astrophysics Data System (ADS)

Thompson, L. M.; Stebbins, J. F.

2011-12-01

Linda M. Thompson Jonathan F. Stebbins Dept. of Geological and Environmental Sciences, Stanford University, Stanford CA 94305 Although it is understood in aluminosilicate melts and glasses that non-bridging oxygens (NBO) have significant influence on thermodynamic and transport properties, questions remain about its role and the extent of its influence, particularly in metaluminous and peraluminous compositions. One major question persists regarding whether the formation of NBO is in any way coupled with the formation of VAl (AlO5), which is significantly impacted by cation field strength (defined as the cation charge divided by the square of the distance between the cation and oxygen atoms) (Kelsey et al., 2009). Previous work on calcium and potassium aluminosilicate glasses has shown the presence of NBO on the metaluminous join and persisting into the peraluminous region, with significantly more NBO present in Ca glasses compared to K glasses of similar composition (Thompson and Stebbins, 2011). However, it is unclear if there is any systematic impact on NBO content by cation field strength similar to the impact on VAl. Expanding on the previous study, barium aluminosilicate glasses were synthesized covering a range of compositions crossing the metaluminous (e.g. BaAl2O4-SiO2) join to observe changes in the NBO for comparison against the calcium aluminosilicate glasses, thus looking at the impact of cation size on NBO versus cation charge. In the barium glasses on the 30 mol% SiO2 isopleth, the highest NBO content was 6.9% for the barium rich glass (R = 0.51, where R is Ba2+ / (Ba2+ + 2Al3+)) while the most peraluminous glass (R = 0.45) had an NBO content of 1.9%. Comparison of these results to earlier data shows these numbers are similar to what is observed in the Ca glasses, indicating cation size alone does not have a significant impact on NBO content. However the VAl content does show a decrease (compared to calcium aluminosilicate glasses at similar R values and Si/Al ratios) with decreasing cation field strength. This suggests that the NBO content is much less sensitive to the cation size than the VAl content and indicates that NBO formation across the metaluminous join cannot be completely explained by linking VAl and NBO but that independent mechanisms of formation must exist. Temperature studies are ongoing to offer additional insight into the relationship between VAl and NBO.

γ-PGA and MTGase improve the formation of ε-(γ-glutamyl) lysine cross-links within hairtail (Trichiurus haumela) surimi protein.

PubMed

Hu, Yaqin; Shao, Ying; Wu, Chunhua; Yuan, Chunhong; Ishimura, Gakushi; Liu, Wenjuan; Chen, Shiguo

2018-03-01

The present study investigated the mechanism of ε-(γ-glutamyl) lysine cross-links within hairtail (Trichiurus haumela) surimi protein via γ-polyglutamic acid (γ-PGA) and MTGase. The results indicated that the addition of MTGase and γ-PGA markedly improved the gelation properties of hairtail surimi protein, including its maximum breaking force and deformation, water holding capacity and gel strength. The maximum improvements were achieved by adding 0.5units MTGase/g meat paste in combination with 0.06% γ-PGA. SDS-PAGE showed that the band intensity of cross-linked proteins increased, whereas that of myosin heavy chain decreased after treatments. Further scanning electron microscopy (SEM) analysis showed the formation of a denser gel matrix, which was caused by much stronger and more inter- and intra-molecular cross-linking of proteins, via MTGase catalysing ε-(γ-glutamyl) lysine cross-links formed between lysine residues in the gel protein and glutamic residues in the hydrolytic γ-PGA. The results provide reliable guidance for the improvement of hairtail surimi protein gelation properties. Copyright © 2017 Elsevier Ltd. All rights reserved.

Role of beta 1-4 linked polymers in the biofilm structure of marine Pseudomonas sp. CE-2 on 304 stainless steel coupons.

PubMed

Jain, Anand; Bhosle, Narayan B

2008-01-01

Pseudomonas sp CE-2 cells attach and form biofilms on 304-stainless steel (SS) coupons. A series of experiments were carried out in order to understand the role of exopolysaccharides (EPS) in the formation and maintenance of CE-2 biofilms on SS coupons. The biofilm density and EPS concentration increased over the period of incubation and the highest values for both were recorded after 72 h. Calcofluor and the lectin concanavalin A (Con A) showed a positive interaction with 72-h old biofilms, indicating the presence of beta 1-4 linked polymers, and alpha-d-glucose and alpha-d-mannose in the biofilm matrix of CE-2. When the CE-2 cells were grown in the presence of calcofluor (200 microg ml(-1)), biofilm formation was significantly reduced (approximately 85%). Conversely, the lectins Con A or WGA did not influence the CE-2 biofilms on the SS coupons. Furthermore, treatment with cellulase, an enzyme specific for the degradation of beta 1-4 linked polymers, removed substantial amounts of CE-2 biofilm from SS coupons. These results strongly suggest the involvement of beta 1-4 linked polymers in the formation and maintenance of Pseudomonas sp. CE-2 biofilms on SS coupons.

Mechanisms and time-resolved dynamics for trihydrogen cation (H 3 +) formation from organic molecules in strong laser fields

DOE Office of Scientific and Technical Information (OSTI.GOV)

Ekanayake, Nagitha; Nairat, Muath; Kaderiya, Balram

Strong-field laser-matter interactions often lead to exotic chemical reactions. Trihydrogen cation formation from organic molecules is one such case that requires multiple bonds to break and form. Here, we present evidence for the existence of two different reaction pathways for H 3 + formation from organic molecules irradiated by a strong-field laser. Assignment of the two pathways was accomplished through analysis of femtosecond time-resolved strong-field ionization and photoion-photoion coincidence measurements carried out on methanol isotopomers, ethylene glycol, and acetone. Ab initio molecular dynamics simulations suggest the formation occurs via two steps: the initial formation of a neutral hydrogen molecule, followedmore » by the abstraction of a proton from the remaining CHOH 2+ fragment by the roaming H 2 molecule. This reaction has similarities to the H 2+H 2 + mechanism leading to formation of H 3 + in the universe. These exotic chemical reaction mechanisms, involving roaming H 2 molecules, are found to occur in the ~100 fs timescale. Roaming molecule reactions may help to explain unlikely chemical processes, involving dissociation and formation of multiple chemical bonds, occurring under strong laser fields.« less

Mechanisms and time-resolved dynamics for trihydrogen cation (H 3 +) formation from organic molecules in strong laser fields

DOE PAGES

Ekanayake, Nagitha; Nairat, Muath; Kaderiya, Balram; ...

2017-07-05

Strong-field laser-matter interactions often lead to exotic chemical reactions. Trihydrogen cation formation from organic molecules is one such case that requires multiple bonds to break and form. Here, we present evidence for the existence of two different reaction pathways for H 3 + formation from organic molecules irradiated by a strong-field laser. Assignment of the two pathways was accomplished through analysis of femtosecond time-resolved strong-field ionization and photoion-photoion coincidence measurements carried out on methanol isotopomers, ethylene glycol, and acetone. Ab initio molecular dynamics simulations suggest the formation occurs via two steps: the initial formation of a neutral hydrogen molecule, followedmore » by the abstraction of a proton from the remaining CHOH 2+ fragment by the roaming H 2 molecule. This reaction has similarities to the H 2+H 2 + mechanism leading to formation of H 3 + in the universe. These exotic chemical reaction mechanisms, involving roaming H 2 molecules, are found to occur in the ~100 fs timescale. Roaming molecule reactions may help to explain unlikely chemical processes, involving dissociation and formation of multiple chemical bonds, occurring under strong laser fields.« less

Formative Assessment Probes: Big and Small Seeds. Linking Formative Assessment Probes to the Scientific Practices

ERIC Educational Resources Information Center

Keeley, Page

2016-01-01

This column focuses on promoting learning through assessment. Formative assessment probes are designed to uncover students' ideas about objects, events, and processes in the natural world. This assessment information is then used throughout instruction to move students toward an understanding of the scientific ideas behind the probes. During the…

Pyruvate formate-lyase interacts directly with the formate channel FocA to regulate formate translocation.

PubMed

Doberenz, Claudia; Zorn, Michael; Falke, Dörte; Nannemann, David; Hunger, Doreen; Beyer, Lydia; Ihling, Christian H; Meiler, Jens; Sinz, Andrea; Sawers, R Gary

2014-07-29

The FNT (formate-nitrite transporters) form a superfamily of pentameric membrane channels that translocate monovalent anions across biological membranes. FocA (formate channel A) translocates formate bidirectionally but the mechanism underlying how translocation of formate is controlled and what governs substrate specificity remains unclear. Here we demonstrate that the normally soluble dimeric enzyme pyruvate formate-lyase (PflB), which is responsible for intracellular formate generation in enterobacteria and other microbes, interacts specifically with FocA. Association of PflB with the cytoplasmic membrane was shown to be FocA dependent and purified, Strep-tagged FocA specifically retrieved PflB from Escherichia coli crude extracts. Using a bacterial two-hybrid system, it could be shown that the N-terminus of FocA and the central domain of PflB were involved in the interaction. This finding was confirmed by chemical cross-linking experiments. Using constraints imposed by the amino acid residues identified in the cross-linking study, we provide for the first time a model for the FocA-PflB complex. The model suggests that the N-terminus of FocA is important for interaction with PflB. An in vivo assay developed to monitor changes in formate levels in the cytoplasm revealed the importance of the interaction with PflB for optimal translocation of formate by FocA. This system represents a paradigm for the control of activity of FNT channel proteins. Copyright © 2014 Elsevier Ltd. All rights reserved.

Structural aspects of digestion of medium chain triglycerides studied in real time using sSAXS and Cryo-TEM.

PubMed

Phan, Stephanie; Hawley, Adrian; Mulet, Xavier; Waddington, Lynne; Prestidge, Clive A; Boyd, Ben J

2013-12-01

The purpose of this study was to investigate the colloidal structures formed on digestion of medium chain triglyceride (MCT) with a specific objective of identifying and characterizing a previously reported vesicular phase, which has been linked to supersaturation and anomalous digestion kinetics, and to evaluate the influence of lipid mass and enzyme inhibition on self assembled structure. MCT was digested in vitro and nanostructure was monitored in real time using synchrotron small angle X-ray scattering (sSAXS), and morphology was studied using cryogenic transmission electron microscopy (cryo-TEM). Formation of the putative vesicular phase formed on digestion of MCT was confirmed and its structural attributes were determined. Vesicle formation was dependent on lipid mass and bile salt concentration. The use of enzyme inhibitor for offline analysis of lipolysis samples did influence structural aspects of the digestion medium when compared to real time evaluation. The formation of a vesicular phase was directly linked to the kinetics of lipid digestion. Vesicle formation is linked to lipid mass, or more specifically the ratio of lipid to bile salts present in the digestion mixture. Inhibition of lipase to halt digestion during sampling for offline analysis must be done with caution as structural aspects were shown to differ for the MCT digests with and without inhibitor present.

FAT10 IS AN EPIGENETIC MARKER FOR LIVER PRENEOPLASIA IN A DRUG-PRIMED MOUSE MODEL OF TUMORIGENESIS

PubMed Central

Oliva, Joan; Bardag-Gorce, Fawzia; French, Barbara A; Li, Jun; McPhaul, Laron; Amidi, Fataneh; Dedes, Jeniffer; Habibi, Amir; Nguyen, Sheila; French, Samuel W

2010-01-01

There is clinical evidence that chronic liver diseases in which MDBs (Mallory Denk Bodies) form progress to hepatocellular carcinoma. The present study provides evidence that links MDB formation induced by chronic drug injury, with preneoplasia and later to the formation of tumors, which develop long after drug withdrawal. Evidence indicated that this link was due to an epigenetic cellular memory induced by chronic drug ingestion. Microarray analysis showed that the expressions of many markers of preneoplasia (UBD, Alpha Fetoprotein, KLF6 and Glutathione-S-Transferase mu2) were increased together when the drug DDC was refed. These changes were suppressed by S-adenosylmethionine feeding, indicating that the drug was affecting DNA and histones methylation in an epigenetic manner. The link between MDB formation and neoplasia formation was likely due to the over expression of UBD (also called FAT10), which is up regulated in 90% of human hepatocellular carcinomas. Immunohistochemical staining of drug primed mouse livers showed that FAT10 positive liver cells persisted up to 4 months after drug withdrawal and they were still found in the livers of mice, 14 months after drug withdrawal. The refeeding of DDC increased the percent of FAT10 hepatocytes. PMID:18280469

Formation of macroscopic surface layers on Fe(0) electrocoagulation electrodes during an extended field trial of arsenic treatment.

PubMed

van Genuchten, Case M; Bandaru, Siva R S; Surorova, Elena; Amrose, Susan E; Gadgil, Ashok J; Peña, Jasquelin

2016-06-01

Extended field trials to remove arsenic (As) via Fe(0) electrocoagulation (EC) have demonstrated consistent As removal from groundwater to concentrations below 10 μg L(-1). However, the coulombic performance of long-term EC field operation is lower than that of laboratory-based systems. Although EC electrodes used over prolonged periods show distinct passivation layers, which have been linked to decreased treatment efficiency, the spatial distribution and mineralogy of such surface layers have not been investigated. In this work, we combine wet chemical measurements with sub-micron-scale chemical maps and selected area electron diffraction (SAED) to determine the chemical composition and mineral phase of surface layers formed during long-term Fe(0) EC treatment. We analyzed Fe(0) EC electrodes used for 3.5 months of daily treatment of As-contaminated groundwater in rural West Bengal, India. We found that the several mm thick layer that formed on cathodes and anodes consisted of primarily magnetite, with minor fractions of goethite. Spatially-resolved SAED patterns also revealed small quantities of CaCO3, Mn oxides, and SiO2, the source of which was the groundwater electrolyte. We propose that the formation of the surface layer contributes to decreased treatment performance by preventing the migration of EC-generated Fe(II) to the bulk electrolyte, where As removal occurs. The trapped Fe(II) subsequently increases the surface layer size at the expense of treatment efficiency. Based on these findings, we discuss several simple and affordable methods to prevent the efficiency loss due to the surface layer, including alternating polarity cycles and cleaning the Fe(0) surface mechanically or via electrolyte scouring. Copyright © 2016 Elsevier Ltd. All rights reserved.

Reversible Thermoset Adhesives

NASA Technical Reports Server (NTRS)

Mac Murray, Benjamin C. (Inventor); Tong, Tat H. (Inventor); Hreha, Richard D. (Inventor)

2016-01-01

Embodiments of a reversible thermoset adhesive formed by incorporating thermally-reversible cross-linking units and a method for making the reversible thermoset adhesive are provided. One approach to formulating reversible thermoset adhesives includes incorporating dienes, such as furans, and dienophiles, such as maleimides, into a polymer network as reversible covalent cross-links using Diels Alder cross-link formation between the diene and dienophile. The chemical components may be selected based on their compatibility with adhesive chemistry as well as their ability to undergo controlled, reversible cross-linking chemistry.

Aerosol Impacts on California Winter Clouds and Precipitation during CalWater 2011: Local Pollution versus Long-Range Transported Dust

DOE Office of Scientific and Technical Information (OSTI.GOV)

Fan, Jiwen; Leung, Lai-Yung R.; DeMott, Paul J.

2014-01-03

Mineral dust aerosols often observed over California in winter and spring, associated with long-range transport from Asia and Sahara, have been linked to enhanced precipitation based on observations. Local anthropogenic pollution, on the other hand, was shown in previous observational and modeling studies to reduce precipitation. Here we incorporate recent developments in ice nucleation parameterizations to link aerosols with ice crystal formation in a spectral-bin cloud microphysical model coupled with the Weather Research and Forecasting (WRF) model, to examine the relative and combined impacts of dust and local pollution particles on cloud properties and precipitation type and intensity. Simulations aremore » carried out for two cloud cases with contrasting meteorology and cloud dynamics that occurred on February 16 (FEB16) and March 02 (MAR02) from the CalWater 2011 field campaign. In both cases, observations show the presence of dust and biological particles in a relative pristine environment. The simulated cloud microphysical properties and precipitation show reasonable agreement with aircraft and surface measurements. Model sensitivity experiments indicate that in the pristine environment, the dust and biological aerosol layers increase the accumulated precipitation by 10-20% from the Central Valley to the Sierra Nevada Mountains for both FEB16 and MAR02 due to a ~40% increase in snow formation, validating the observational hypothesis. Model results show that local pollution increases precipitation over the windward slope of the mountains by few percent due to increased snow formation when dust is present but reduces precipitation by 5-8% if dust is removed on FEB16. The effects of local pollution on cloud microphysics and precipitation strongly depend on meteorology including the strength of the Sierra Barrier Jet, and cloud dynamics. This study further underscores the importance of the interactions between local pollution, dust, and environmental conditions for assessing aerosol effects on cold season precipitation in California.« less

Rolling Deck to Repository (R2R): Standards and Semantics for Open Access to Research Data

NASA Astrophysics Data System (ADS)

Arko, Robert; Carbotte, Suzanne; Chandler, Cynthia; Smith, Shawn; Stocks, Karen

2015-04-01

In recent years, a growing number of funding agencies and professional societies have issued policies calling for open access to research data. The Rolling Deck to Repository (R2R) program is working to ensure open access to the environmental sensor data routinely acquired by the U.S. academic research fleet. Currently 25 vessels deliver 7 terabytes of data to R2R each year, acquired from a suite of geophysical, oceanographic, meteorological, and navigational sensors on over 400 cruises worldwide. R2R is working to ensure these data are preserved in trusted repositories, discoverable via standard protocols, and adequately documented for reuse. R2R maintains a master catalog of cruises for the U.S. academic research fleet, currently holding essential documentation for over 3,800 expeditions including vessel and cruise identifiers, start/end dates and ports, project titles and funding awards, science parties, dataset inventories with instrument types and file formats, data quality assessments, and links to related content at other repositories. A Digital Object Identifier (DOI) is published for 1) each cruise, 2) each original field sensor dataset, 3) each post-field data product such as quality-controlled shiptrack navigation produced by the R2R program, and 4) each document such as a cruise report submitted by the science party. Scientists are linked to personal identifiers, such as the Open Researcher and Contributor ID (ORCID), where known. Using standard global identifiers such as DOIs and ORCIDs facilitates linking with journal publications and generation of citation metrics. Since its inception, the R2R program has worked in close collaboration with other data repositories in the development of shared semantics for oceanographic research. The R2R cruise catalog uses community-standard terms and definitions hosted by the NERC Vocabulary Server, and publishes ISO metadata records for each cruise that use community-standard profiles developed with the NOAA Data Centers and the EU SeaDataNet project. R2R is a partner in the Ocean Data Interoperability Platform (ODIP), working to strengthen links among regional and national data systems, as well as a lead partner in the EarthCube "GeoLink" project, developing a standard set of ontology design patterns for publishing research data using Semantic Web protocols.

A single-cell spiking model for the origin of grid-cell patterns

PubMed Central

Kempter, Richard

2017-01-01

Spatial cognition in mammals is thought to rely on the activity of grid cells in the entorhinal cortex, yet the fundamental principles underlying the origin of grid-cell firing are still debated. Grid-like patterns could emerge via Hebbian learning and neuronal adaptation, but current computational models remained too abstract to allow direct confrontation with experimental data. Here, we propose a single-cell spiking model that generates grid firing fields via spike-rate adaptation and spike-timing dependent plasticity. Through rigorous mathematical analysis applicable in the linear limit, we quantitatively predict the requirements for grid-pattern formation, and we establish a direct link to classical pattern-forming systems of the Turing type. Our study lays the groundwork for biophysically-realistic models of grid-cell activity. PMID:28968386

The morpho-mechanical basis of ammonite form.

PubMed

Moulton, D E; Goriely, A; Chirat, R

2015-01-07

Ammonites are a group of extinct cephalopods that garner tremendous interest over a range of scientific fields and have been a paradigm for biochronology, palaeobiology, and evolutionary theories. Their defining feature is the spiral geometry and ribbing pattern through which palaeontologists infer phylogenetic relationships and evolutionary trends. Here, we develop a morpho-mechanical model for ammonite morphogenesis. While a wealth of observations have been compiled on ammonite form, and several functional interpretations may be found, this study presents the first quantitative model to explain rib formation. Our approach, based on fundamental principles of growth and mechanics, gives a natural explanation for the morphogenesis and diversity of ribs, uncovers intrinsic laws linking ribbing and shell geometry, and provides new opportunities to interpret ammonites' and other mollusks' evolution. Copyright © 2014 Elsevier Ltd. All rights reserved.

A link between nonlinear self-organization and dissipation in drift-wave turbulence

DOE Office of Scientific and Technical Information (OSTI.GOV)

Manz, P.; Birkenmeier, G.; Stroth, U.

Structure formation and self-organization in two-dimensional drift-wave turbulence show up in many different faces. Fluctuation data from a magnetized plasma are analyzed and three mechanisms transferring kinetic energy to large-scale structures are identified. Beside the common vortex merger, clustering of vortices constituting a large-scale strain field and vortex thinning, where due to the interactions of vortices of different scales larger vortices are amplified by the smaller ones, are observed. The vortex thinning mechanism appears to be the most efficient one to generate large scale structures in drift-wave turbulence. Vortex merging as well as vortex clustering are accompanied by strong energymore » transfer to small-scale noncoherent fluctuations (dissipation) balancing the negative entropy generation due to the self-organization process.« less

Composite operators in cubic field theories and link-overlap fluctuations in spin-glass models

NASA Astrophysics Data System (ADS)

Altieri, Ada; Parisi, Giorgio; Rizzo, Tommaso

2016-01-01

We present a complete characterization of the fluctuations and correlations of the squared overlap in the Edwards-Anderson spin-glass model in zero field. The analysis reveals that the energy-energy correlation (and thus the specific heat) has a different critical behavior than the fluctuations of the link overlap in spite of the fact that the average energy and average link overlap have the same critical properties. More precisely the link-overlap fluctuations are larger than the specific heat according to a computation at first order in the 6 -ɛ expansion. An unexpected outcome is that the link-overlap fluctuations have a subdominant power-law contribution characterized by an anomalous logarithmic prefactor which is absent in the specific heat. In order to compute the ɛ expansion we consider the problem of the renormalization of quadratic composite operators in a generic multicomponent cubic field theory: the results obtained have a range of applicability beyond spin-glass theory.

Standardized reporting using CODES (Crash Outcome Data Evaluation System)

DOT National Transportation Integrated Search

1999-12-01

While CODES projects have expanded to 25 states, there is no standardized reporting of the outcome measures that are available with linked data. This paper describes our efforts to build a standard format for reporting these outcomes. This format is ...

Modulation of type II TGF-β receptor degradation by integrin-linked kinase.

PubMed

Vi, Linda; Boo, Stellar; Sayedyahossein, Samar; Singh, Randeep K; McLean, Sarah; Di Guglielmo, Gianni M; Dagnino, Lina

2015-03-01

Cutaneous responses to injury, infection, and tumor formation involve the activation of resident dermal fibroblasts and subsequent transition to myofibroblasts. The key for induction of myofibroblast differentiation is the activation of transforming growth factor-β (TGF-β) receptors and stimulation of integrins and their associated proteins, including integrin-linked kinase (ILK). Cross-talk processes between TGF-β and ILK are crucial for myofibroblast formation, as ILK-deficient dermal fibroblasts exhibit impaired responses to TGF-β receptor stimulation. We now show that ILK associates with type II TGF-β receptors (TβRII) in ligand- and receptor kinase activity-independent manners. In cells with targeted Ilk gene inactivation, cellular levels of TβRII are decreased, through mechanisms that involve enhanced ubiquitination and proteasomal degradation. Partitioning of TGF-β receptors into membrane has been linked to proteasome-dependent receptor degradation. We found that interfering with membrane raft formation in ILK-deficient cells restored TβRII levels and signaling. These observations support a model whereby ILK functions in fibroblasts to direct TβRII away from degradative pathways during their differentiation into myofibroblasts.

The Aggregation Paths and Products of Aβ42 Dimers Are Distinct from Those of the Aβ42 Monomer.

PubMed

O'Malley, Tiernan T; Witbold, William M; Linse, Sara; Walsh, Dominic M

2016-11-08

Extracts of Alzheimer's disease (AD) brain that contain what appear to be sodium dodecyl sulfate-stable amyloid β-protein (Aβ) dimers potently block LTP and impair memory consolidation. Brain-derived dimers can be physically separated the Aβ monomer, consist primarily of Aβ42, and resist denaturation by chaotropic agents. In nature, covalently cross-linked Aβ dimers could be generated in two ways: by the formation of a dityrosine (DiY) or an isopeptide ε-(γ-glutamyl)-lysine (Q-K) bond. We enzymatically cross-linked recombinant Aβ42 monomer to produce DiY and Q-K dimers and then used a range of biophysical methods to study their aggregation. Both Q-K and DiY dimers aggregate to form soluble assemblies distinct from the fibrillar aggregates formed by the Aβ monomer. The results suggest that the cross-links disfavor fibril formation from Aβ dimers, thereby enhancing the concentration of soluble aggregates akin to those in aqueous extracts of AD brain. Thus, it seems that Aβ dimers may play an important role in determining the formation of soluble rather than insoluble aggregates.

The Glycerate and Phosphorylated Pathways of Serine Synthesis in Plants: The Branches of Plant Glycolysis Linking Carbon and Nitrogen Metabolism.

PubMed

Igamberdiev, Abir U; Kleczkowski, Leszek A

2018-01-01

Serine metabolism in plants has been studied mostly in relation to photorespiration where serine is formed from two molecules of glycine. However, two other pathways of serine formation operate in plants and represent the branches of glycolysis diverging at the level of 3-phosphoglyceric acid. One branch (the glycerate - serine pathway) is initiated in the cytosol and involves glycerate formation from 3-phosphoglycerate, while the other (the phosphorylated serine pathway) operates in plastids and forms phosphohydroxypyruvate as an intermediate. Serine formed in these pathways becomes a precursor of glycine, formate and glycolate accumulating in stress conditions. The pathways can be linked to GABA shunt via transamination reactions and via participation of the same reductase for both glyoxylate and succinic semialdehyde. In this review paper we present a hypothesis of the regulation of redox balance in stressed plant cells via participation of the reactions associated with glycerate and phosphorylated serine pathways. We consider these pathways as important processes linking carbon and nitrogen metabolism and maintaining cellular redox and energy levels in stress conditions.

An iPad and Android-based Application for Digitally Recording Geologic Field Data

NASA Astrophysics Data System (ADS)

Malinconico, L. L.; Sunderlin, D.; Liew, C.; Ho, A. S.; Bekele, K. A.

2011-12-01

Field experience is a significant component in most geology courses, especially sed/strat and structural geology. Increasingly, the spatial presentation, analysis and interpretation of geologic data is done using digital methodologies (GIS, Google Earth, stereonet and spreadsheet programs). However, students and professionals continue to collect field data manually on paper maps and in the traditional "orange field notebooks". Upon returning from the field, data are then manually transferred into digital formats for processing, mapping and interpretation. The transfer process is both cumbersome and prone to transcription error. In conjunction with the computer science department, we are in the process of developing an application (App) for iOS (the iPad) and Android platforms that can be used to digitally record data measured in the field. This is not a mapping program, but rather a way of bypassing the field book step to acquire digital data directly that can then be used in various analysis and display programs. Currently, the application allows the user to select from five different structural data situations: contact, bedding, fault, joints and "other". The user can define a folder for the collection and separation of data for each project. Observations are stored as individual records of field measurements in each folder. The exact information gathered depends on the nature of the observation, but common to all pages is the ability to log date, time, and lat/long directly from the tablet. Information like strike and dip are entered using scroll wheels and formation names are also entered using scroll wheels that access easy-to-modify lists of the area's stratigraphic units. This insures uniformity in the creation of the digital records from day-to-day and across field teams. Pictures can also be taken using the tablet's camera that are linked to each record. Once the field collection is complete the data (including images) can be easily exported to a .csv file that can be opened in Excel for digital preparation for use in other programs. We will be field-testing the App in the fall, 2011 with weekly exercises and a week-long mapping project in Wyoming. We then will want to share the beta version of the software (at the meeting) with professional geologists and students in geology programs at other academic institutions to truly test the stability of the software and to solicit suggestions for improvements and additions.

[The effect of structure of benzimidazoles on the character of forming intramolecular cross-links in DNA and chromatin].

PubMed

Mil', E M; Zhil'tsova, V M; Biniukov, V I; Zhizhina, G P; Stoliarova, L G; Kuznetsov, Iu P

1994-01-01

An investigation of a number of benzimidazole class preparations, being distinguished by a position of aminomethyl substitutes, has been carried out. It has been shown, that the non-substituted preparation BIO-10 does not form UV-cross-links in DNA and chromatine; BIO-40, having one substitute in the position 2, causes the formation of inter-molecular cross-links DNA-DNA. The preparation BIO-50, having 2 aminomethyl groups in the imidazole nucleus positions 2 and 6, forms cross-links DNA-DNA and DNA-protein in chromatine. The generation of radicals by the preparations BIO-10 and BIO-50 has been studied by the EPR-method by use of spin trap. It has been demonstrated, that BIO-10, unlike BIO-50, actively generates superoxide. A supposition has been made, that an UV-formation of superoxide-radical in the presence of BIO-10 might be a reason of DNA-macromolecule destruction.

Strongly Magnetized Accretion Disks in Active Galactic Nuclei

NASA Astrophysics Data System (ADS)

Begelman, Mitchell

Accretion disks likely provide the conduit for fueling active galactic nuclei (AGN), linking the black hole's immediate surroundings to the host galaxy's nuclear star cluster, and possibly beyond. Yet detailed AGN disk models fail to explain several of the most basic observational features of AGN: How do the outer regions of the disk avoid stalling as a result of wholesale gravitational fragmentation? What regulates the amount of star formation that is inferred to accompany accretion in some AGN? Why is the broad emission line region a ubiquitous feature of luminous AGN? What processes create and maintain the so-called "dusty torus"? Analytic work suggests that vertical pressure support of the disk primarily by a toroidal magnetic field, rather than by gas or radiation pressure, can readily resolve these problems. And recent numerical simulations have indicated that such a strong toroidal field is the inevitable consequence of the magnetorotational instability (MRI) when a disk accumulates a modest amount of net magnetic flux, thus providing a sound theoretical basis for strongly magnetized disks. We propose an analytic and computational study of such disks in the AGN context, focusing on: (1) The basic physical properties of strongly magnetized AGN disks. We will focus on the competition between field generation and buoyancy, improving on previous work by considering realistic equations of state, dissipative processes and radiative losses. We will use global simulations to test the limiting magnetic fields that can be produced by MRIdriven accretion disk dynamos and explore the driving mechanisms of disk winds and the resulting levels of mass, angular momentum and energy loss. (2) Gravitational fragmentation and star formation in strongly magnetized disks. We will determine how a strong field reduces and regulates gravitational fragmentation, by both lowering the disk density and creating a stratified structure in which star formation near the equator can co-exist with accretion at large heights. Using simulations, we will study fragmentation conditions, the clumpiness of stable AGN disks, and the mass function of collapsed clumps. (3) Physics of the broad emission line region and dusty torus . We will study the possible role of the strong toroidal field in promoting thermal instabilities to create dense lineemitting filaments, transporting them in height, and confining the line-emitting gas. Extrapolating to slightly larger distances, we will examine whether the field can elevate dusty gas to heights at which it can reprocess a substantial fraction of the AGN radiation. This study will establish a new theoretical framework for interpreting multi-wavelength observations of AGN, involving NASA s infrared, ultraviolet and X-ray observatories as well as ground-based detectors. It addresses fundamental questions about how supermassive black holes interact with their galactic environments, as well as broader issues of feedback and black hole-galaxy co-evolution.

Intramolecular aggregation and optical limiting properties of triazine-linked mono-, bis- and tris-phthalocyanines.

PubMed

Chen, Jun; Zhang, Tao; Wang, Shuangqing; Hu, Rui; Li, Shayu; Ma, Jin Shi; Yang, Guoqiang

2015-10-05

A series of triazine-linked mono-, bis- and tris-phthalocyanines are synthesized, intramolecular aggregation is found in bis- and tris-phthalocyanines via π-π stacking interaction. Theoretical and experimental studies reveal the formation of the intramolecular aggregation. The spectrographic, photophysical and nonlinear optical properties of these compounds are adjusted for the formation of the intramolecular aggregation. The bis-phthalocyanine dimer presents smaller fluorescence quantum yield, lower triplet formation yield and the triplet-minus-ground state extinction coefficient, which causes poorer optical limiting performance. It is interesting that the tris-phthalocyanine is composed of a mono-phthalocyanine part and a bis-phthalocyanine part, the optical limiting property of the tris-phthalocyanine is similar to that of mono-phthalocyanine. Copyright © 2015 Elsevier B.V. All rights reserved.

A link between torse-forming vector fields and rotational hypersurfaces

NASA Astrophysics Data System (ADS)

Chen, Bang-Yen; Verstraelen, Leopold

Torse-forming vector fields introduced by Yano [On torse forming direction in a Riemannian space, Proc. Imp. Acad. Tokyo 20 (1944) 340-346] are natural extension of concurrent and concircular vector fields. Such vector fields have many nice applications to geometry and mathematical physics. In this paper, we establish a link between rotational hypersurfaces and torse-forming vector fields. More precisely, our main result states that, for a hypersurface M of 𝔼n+1 with n ≥ 3, the tangential component xT of the position vector field of M is a proper torse-forming vector field on M if and only if M is contained in a rotational hypersurface whose axis of rotation contains the origin.

Persistent Identifiers for Field Deployments: A Missing Link in the Provenance Chain

NASA Astrophysics Data System (ADS)

Arko, R. A.; Ji, P.; Fils, D.; Shepherd, A.; Chandler, C. L.; Lehnert, K.

2016-12-01

Research in the geosciences is characterized by a wide range of complex and costly field deployments including oceanographic cruises, submersible dives, drilling expeditions, seismic networks, geodetic campaigns, moored arrays, aircraft flights, and satellite missions. Each deployment typically produces a mix of sensor and sample data, spanning a period from hours to decades, that ultimately yields a long tail of post-field products and publications. Publishing persistent, citable identifiers for field deployments will facilitate 1) preservation and reuse of the original field data, 2) reproducibility of the resulting publications, and 3) recognition for both the facilities that operate the platforms and the investigators who secure funding for the experiments. In the ocean domain, sharing unique identifiers for field deployments is a familiar practice. For example, the Biological and Chemical Oceanography Data Management Office (BCO-DMO) routinely links datasets to cruise identifiers published by the Rolling Deck to Repository (R2R) program. In recent years, facilities have started to publish formal/persistent identifiers, typically Digital Object Identifiers (DOIs), for field deployments including seismic networks, oceanographic cruises, and moored arrays. For example, the EarthChem Library (ECL) publishes a DOI for each dataset which, if it derived from an oceanographic research cruise on a US vessel, is linked to a DOI for the cruise published by R2R. Work is underway to create similar links for the IODP JOIDES Resolution Science Operator (JRSO) and the Continental Scientific Drilling Coordination Office (CSDCO). We present results and lessons learned including a draft schema for publishing field deployments as DataCite DOI records; current practice for linking these DOIs with related identifiers such as Open Researcher and Contributor IDs (ORCIDs), Open Funder Registry (OFR) codes, and International Geo Sample Numbers (IGSNs); and consideration of other identifier types for field deployments such as UUIDs and Handles.

NIH Seeks Input on In-patient Clinical Research Areas | Division of Cancer Prevention

Cancer.gov

[[{"fid":"2476","view_mode":"default","fields":{"format":"default","field_file_image_alt_text[und][0][value]":"Aerial view of the National Institutes of Health Clinical Center (Building 10) in Bethesda, Maryland.","field_file_image_title_text[und][0][value]":false},"type":"media","field_deltas":{"1":{"format":"default","field_file_image_alt_text[und][0][value]":"Aerial view of

Pancreatic Cancer Detection Consortium (PCDC) | Division of Cancer Prevention

Cancer.gov

[[{"fid":"2256","view_mode":"default","fields":{"format":"default","field_file_image_alt_text[und][0][value]":"A 3-dimensional image of a human torso highlighting the pancreas.","field_file_image_title_text[und][0][value]":false},"type":"media","field_deltas":{"1":{"format":"default","field_file_image_alt_text[und][0][value]":"A 3-dimensional image of a human torso

A metadata reporting framework (FRAMES) for synthesis of ecohydrological observations

DOE PAGES

Christianson, Danielle S.; Varadharajan, Charuleka; Christoffersen, Bradley; ...

2017-06-20

Metadata describe the ancillary information needed for data interpretation, comparison across heterogeneous datasets, and quality control and quality assessment (QA/QC). Metadata enable the synthesis of diverse ecohydrological and biogeochemical observations, an essential step in advancing a predictive understanding of earth systems. Environmental observations can be taken across a wide range of spatiotemporal scales in a variety of measurement settings and approaches, and saved in multiple formats. Thus, well-organized, consistent metadata are required to produce usable data products from diverse observations collected in disparate field sites. However, existing metadata reporting protocols do not support the complex data synthesis needs of interdisciplinarymore » earth system research. We developed a metadata reporting framework (FRAMES) to enable predictive understanding of carbon cycling in tropical forests under global change. FRAMES adheres to best practices for data and metadata organization, enabling consistent data reporting and thus compatibility with a variety of standardized data protocols. We used an iterative scientist-centered design process to develop FRAMES. The resulting modular organization streamlines metadata reporting and can be expanded to incorporate additional data types. The flexible data reporting format incorporates existing field practices to maximize data-entry efficiency. With FRAMES’s multi-scale measurement position hierarchy, data can be reported at observed spatial resolutions and then easily aggregated and linked across measurement types to support model-data integration. FRAMES is in early use by both data providers and users. Here in this article, we describe FRAMES, identify lessons learned, and discuss areas of future development.« less

Surface phenomena revealed by in situ imaging: studies from adhesion, wear and cutting

NASA Astrophysics Data System (ADS)

Viswanathan, Koushik; Mahato, Anirban; Yeung, Ho; Chandrasekar, Srinivasan

2017-03-01

Surface deformation and flow phenomena are ubiquitous in mechanical processes. In this work we present an in situ imaging framework for studying a range of surface mechanical phenomena at high spatial resolution and across a range of time scales. The in situ framework is capable of resolving deformation and flow fields quantitatively in terms of surface displacements, velocities, strains and strain rates. Three case studies are presented demonstrating the power of this framework for studying surface deformation. In the first, the origin of stick-slip motion in adhesive polymer interfaces is investigated, revealing a intimate link between stick-slip and surface wave propagation. Second, the role of flow in mediating formation of surface defects and wear particles in metals is analyzed using a prototypical sliding process. It is shown that conventional post-mortem observation and inference can lead to erroneous conclusions with regard to formation of surface cracks and wear particles. The in situ framework is shown to unambiguously capture delamination wear in sliding. Third, material flow and surface deformation in a typical cutting process is analyzed. It is shown that a long-standing problem in the cutting of annealed metals is resolved by the imaging, with other benefits such as estimation of energy dissipation and power from the flow fields. In closure, guidelines are provided for profitably exploiting in situ observations to study large-strain deformation, flow and friction phenomena at surfaces that display a variety of time-scales.

A metadata reporting framework (FRAMES) for synthesis of ecohydrological observations

DOE Office of Scientific and Technical Information (OSTI.GOV)

Christianson, Danielle S.; Varadharajan, Charuleka; Christoffersen, Bradley

Metadata describe the ancillary information needed for data interpretation, comparison across heterogeneous datasets, and quality control and quality assessment (QA/QC). Metadata enable the synthesis of diverse ecohydrological and biogeochemical observations, an essential step in advancing a predictive understanding of earth systems. Environmental observations can be taken across a wide range of spatiotemporal scales in a variety of measurement settings and approaches, and saved in multiple formats. Thus, well-organized, consistent metadata are required to produce usable data products from diverse observations collected in disparate field sites. However, existing metadata reporting protocols do not support the complex data synthesis needs of interdisciplinarymore » earth system research. We developed a metadata reporting framework (FRAMES) to enable predictive understanding of carbon cycling in tropical forests under global change. FRAMES adheres to best practices for data and metadata organization, enabling consistent data reporting and thus compatibility with a variety of standardized data protocols. We used an iterative scientist-centered design process to develop FRAMES. The resulting modular organization streamlines metadata reporting and can be expanded to incorporate additional data types. The flexible data reporting format incorporates existing field practices to maximize data-entry efficiency. With FRAMES’s multi-scale measurement position hierarchy, data can be reported at observed spatial resolutions and then easily aggregated and linked across measurement types to support model-data integration. FRAMES is in early use by both data providers and users. Here in this article, we describe FRAMES, identify lessons learned, and discuss areas of future development.« less

Computational adaptive optics for broadband interferometric tomography of tissues and cells

NASA Astrophysics Data System (ADS)

Adie, Steven G.; Mulligan, Jeffrey A.

2016-03-01

Adaptive optics (AO) can shape aberrated optical wavefronts to physically restore the constructive interference needed for high-resolution imaging. With access to the complex optical field, however, many functions of optical hardware can be achieved computationally, including focusing and the compensation of optical aberrations to restore the constructive interference required for diffraction-limited imaging performance. Holography, which employs interferometric detection of the complex optical field, was developed based on this connection between hardware and computational image formation, although this link has only recently been exploited for 3D tomographic imaging in scattering biological tissues. This talk will present the underlying imaging science behind computational image formation with optical coherence tomography (OCT) -- a beam-scanned version of broadband digital holography. Analogous to hardware AO (HAO), we demonstrate computational adaptive optics (CAO) and optimization of the computed pupil correction in 'sensorless mode' (Zernike polynomial corrections with feedback from image metrics) or with the use of 'guide-stars' in the sample. We discuss the concept of an 'isotomic volume' as the volumetric extension of the 'isoplanatic patch' introduced in astronomical AO. Recent CAO results and ongoing work is highlighted to point to the potential biomedical impact of computed broadband interferometric tomography. We also discuss the advantages and disadvantages of HAO vs. CAO for the effective shaping of optical wavefronts, and highlight opportunities for hybrid approaches that synergistically combine the unique advantages of hardware and computational methods for rapid volumetric tomography with cellular resolution.

An Accurate Link Correlation Estimator for Improving Wireless Protocol Performance

PubMed Central

Zhao, Zhiwei; Xu, Xianghua; Dong, Wei; Bu, Jiajun

2015-01-01

Wireless link correlation has shown significant impact on the performance of various sensor network protocols. Many works have been devoted to exploiting link correlation for protocol improvements. However, the effectiveness of these designs heavily relies on the accuracy of link correlation measurement. In this paper, we investigate state-of-the-art link correlation measurement and analyze the limitations of existing works. We then propose a novel lightweight and accurate link correlation estimation (LACE) approach based on the reasoning of link correlation formation. LACE combines both long-term and short-term link behaviors for link correlation estimation. We implement LACE as a stand-alone interface in TinyOS and incorporate it into both routing and flooding protocols. Simulation and testbed results show that LACE: (1) achieves more accurate and lightweight link correlation measurements than the state-of-the-art work; and (2) greatly improves the performance of protocols exploiting link correlation. PMID:25686314

Cross-linked electrospun cartilage acellular matrix/poly(caprolactone-co-lactide-co-glycolide) nanofiber as an antiadhesive barrier.

PubMed

Lee, Jin Woo; Park, Joon Yeong; Park, Seung Hun; Kim, Min Ju; Song, Bo Ram; Yun, Hee-Woong; Kang, Tae Woong; Choi, Hak Soo; Kim, Young Jick; Min, Byoung Hyun; Kim, Moon Suk

2018-07-01

In this work, we chose cartilage acellular matrix (CAM) as a promising antiadhesive material because CAM effectively inhibits the formation of blood vessels, and we used electrospinning to prepare antiadhesive barriers. Additionally, we synthesized N-hydroxysuccinimide (NHS)-poly(caprolactone-co-lactide-co-glycolide)-NHS (MP) copolymers (to tune degradation) as a cross-linking agent for CAM. This is the first report on the development of electrospun cross-linked (Cx) CAM/MP (CA/P) nanofiber (NF) (Cx-CA/P-NF) with a tunable degradation period as an antiadhesive barrier. Compared with the CA/P-NF before cross-linking, the electrospun Cx-CA/P-NF after cross-linking showed different biodegradation. Cx-CA/P-NF significantly inhibited the in vitro attachment and proliferation of human umbilical vein endothelial cells (HUVECs), as confirmed by an MTT assay and scanning electron microscopy images. Cx-CA/P-NFs implanted between a surgically damaged peritoneal wall and cecum gradually degraded in 7 days; this process was monitored by NIR imaging. The in vivo evaluation of the anti-tissue adhesive effect of Cx-CA/P-NFs revealed little adhesion, few blood vessels, and negligible inflammation at 7 days determined by hematoxylin and eosin staining. ED1 staining of Cx-CA/P-NFs showed infiltration of few macrophages because of the inflammatory response to the Cx-CA/P-NF as compared with an untreated injury model. Additionally, Cx-CA/P-NFs significantly suppressed the formation of blood vessels between the peritoneal wall and cecum, according to CD31 staining. Overall, Cx-CA/P-NFs yielded little adhesion, infiltration by macrophages, or formation of blood vessels in a postoperative antiadhesion assay. Thus, it is reasonable to conclude that the Cx-CA/P-NF designed herein successfully works as an antiadhesive barrier with a tunable degradation period. The cartilage acellular matrix (CAM) can inhibit the formation of fibrous tissue bridges and blood vessels between the tissue at an injured site and the surrounding healthy tissues. However, CAM has not been rigorously investigated as an antiadhesive barrier. In this manuscript, the cross-linked CAM nanofiber (Cx-CA/P-NF) designed herein successfully works as an antiadhesive barrier. Cx-CA/P-NFs yielded little adhesion, infiltration by macrophages, or formation of blood vessels in a postoperative antiadhesion assay. Moreover, we demonstrated the suitable properties of Cx-CA/P-NF such as easy cross-linking by maintaining the antiadhesive properties, controllable biodegradation, and in vivo antiadhesive effect of Cx-CA/P-NF. Copyright © 2018 Acta Materialia Inc. Published by Elsevier Ltd. All rights reserved.

Plasma-gun-assisted field-reversed configuration formation in a conical θ-pinch

NASA Astrophysics Data System (ADS)

Weber, T. E.; Intrator, T. P.; Smith, R. J.

2015-04-01

Injection of plasma via an annular array of coaxial plasma guns during the pre-ionization phase of field-reversed configuration (FRC) formation is shown to catalyze the bulk ionization of a neutral gas prefill in the presence of a strong axial magnetic field and change the character of outward flux flow during field-reversal from a convective process to a much slower resistive diffusion process. This approach has been found to significantly improve FRC formation in a conical θ-pinch, resulting in a ˜350% increase in trapped flux at typical operating conditions, an expansion of accessible formation parameter space to lower densities and higher temperatures, and a reduction or elimination of several deleterious effects associated with the pre-ionization phase.

Knotted optical vortices in exact solutions to Maxwell's equations

NASA Astrophysics Data System (ADS)

de Klerk, Albertus J. J. M.; van der Veen, Roland I.; Dalhuisen, Jan Willem; Bouwmeester, Dirk

2017-05-01

We construct a family of exact solutions to Maxwell's equations in which the points of zero intensity form knotted lines topologically equivalent to a given but arbitrary algebraic link. These lines of zero intensity, more commonly referred to as optical vortices, and their topology are preserved as time evolves and the fields have finite energy. To derive explicit expressions for these new electromagnetic fields that satisfy the nullness property, we make use of the Bateman variables for the Hopf field as well as complex polynomials in two variables whose zero sets give rise to algebraic links. The class of algebraic links includes not only all torus knots and links thereof, but also more intricate cable knots. While the unknot has been considered before, the solutions presented here show that more general knotted structures can also arise as optical vortices in exact solutions to Maxwell's equations.

Self-Consistent Field Lattice Model for Polymer Networks.

PubMed

Tito, Nicholas B; Storm, Cornelis; Ellenbroek, Wouter G

2017-12-26

A lattice model based on polymer self-consistent field theory is developed to predict the equilibrium statistics of arbitrary polymer networks. For a given network topology, our approach uses moment propagators on a lattice to self-consistently construct the ensemble of polymer conformations and cross-link spatial probability distributions. Remarkably, the calculation can be performed "in the dark", without any prior knowledge on preferred chain conformations or cross-link positions. Numerical results from the model for a test network exhibit close agreement with molecular dynamics simulations, including when the network is strongly sheared. Our model captures nonaffine deformation, mean-field monomer interactions, cross-link fluctuations, and finite extensibility of chains, yielding predictions that differ markedly from classical rubber elasticity theory for polymer networks. By examining polymer networks with different degrees of interconnectivity, we gain insight into cross-link entropy, an important quantity in the macroscopic behavior of gels and self-healing materials as they are deformed.

Hydrogen Peroxide Activated Quinone Methide Precursors with Enhanced DNA Cross-Linking Capability and Cytotoxicity towards Cancer Cells

PubMed Central

Wang, Yibin; Fan, Heli; Balakrishnan, Kumudha; Lin, Zechao; Cao, Sheng; Chen, Wenbing; Fan, Yukai; Guthrie, Quibria A.; Sun, Huabing; Teske, Kelly A.; Gandhi, Varsha; Arnold, Leggy A.; Peng, Xiaohua

2017-01-01

Quinone methide (QM) formation induced by endogenously generated H2O2 is attractive for biological and biomedical applications. To overcome current limitations due to low biological activity of H2O2-activated QM precursors, we are introducing herein several new arylboronates with electron donating substituents at different positions of benzene ring and/or different neutral leaving groups. The reaction rate of the arylboronate esters with H2O2 and subsequent bisquinone methides formation and DNA cross-linking was accelerated with the application of Br as a leaving group instead of acetoxy groups. Additionally, a donating group placed meta to the nascent exo-methylene group of the quinone methide greatly improves H2O2-induced DNA interstrand cross-link formation as well as enhances the cellular activity. Multiple donating groups decrease the stability and DNA cross-linking capability, which lead to low cellular activity. A cell-based screen demonstrated that compounds 2a and 5a with a OMe or OH group dramatically inhibited the growth of various tissue-derived cancer cells while normal cells were less affected. Induction of H2AX phosphorylation by these compounds in CLL lymphocytes provide evidence for a correlation between cell death and DNA damage. The compounds presented herein showed potent anticancer activities and selectivity, which represent a novel scaffold for anticancer drug development. PMID:28388522

Does intraplate brittle deformation indicate far-field stress signals? A case study of Central Europe

NASA Astrophysics Data System (ADS)

Navabpour, Payman; Kley, Jonas; Le Breton, Eline; van Hinsbergen, Douwe J. J.; Ustaszewski, Kamil

2017-04-01

Even though Central Europe has been located within a plate interior since the end of the Variscan orogeny, its intracontinental basins and highs recorded a succession of different tectonic regimes throughout the Mesozoic and Cenozoic, which were coeval with events at distant plate margins. A long Triassic-Cretaceous period of weak subsidence with intermittent extension was followed by NNE-SSW contraction in the Late Cretaceous-Paleocene. Renewed extension led to the formation of the Cenozoic Rift System and eventually evolved to the present-day variable stress regimes with a consistent NW-SE-oriented maximum horizontal shortening, SHmax. The detailed knowledge of this evolution relies on exhaustive lithostratigraphy and geochronological datasets, as well as on reconstruction of successive states of paleostress that controlled the formation and/or inversion of intracontinental basins. In combination, these data provide an excellent opportunity of linking the intracontinental deformation to the lithospheric plate boundary kinematics. Regional-scale analysis of fault kinematics in Central Europe unveiled a succession of consistent stress states for the crystalline basement and sedimentary cover of the brittle crust. These states of stress include a post-Triassic normal faulting regime with NE-SW-trending σ3 axis, strike-slip and thrust faulting regimes with NNE-SSW-trending σ1 axis, supposedly of Late Cretaceous age, and two younger events of normal and strike-slip faulting regimes with NW-SE-trending σ3 and σ1 axes, respectively. In this study, we report on the first attempts of linking the central European intraplate kinematics to changes in relative motion between the plates. The integration of stress fields with plate boundary kinematics suggests that the Late Cretaceous contraction may be explained by a change in African plate motion with respect to Eurasia from SE-directed sinistral transform to NNE-directed convergence. The reorientation of contraction to the present-day SHmax likely results from a change in direction of Africa-Eurasia plate convergence from N-S to NW-SE combined with plume-enhanced ridge push of the North Atlantic Ocean.

Dynamic graph system for a semantic database

DOEpatents

Mizell, David

2016-04-12

A method and system in a computer system for dynamically providing a graphical representation of a data store of entries via a matrix interface is disclosed. A dynamic graph system provides a matrix interface that exposes to an application program a graphical representation of data stored in a data store such as a semantic database storing triples. To the application program, the matrix interface represents the graph as a sparse adjacency matrix that is stored in compressed form. Each entry of the data store is considered to represent a link between nodes of the graph. Each entry has a first field and a second field identifying the nodes connected by the link and a third field with a value for the link that connects the identified nodes. The first, second, and third fields represent the rows, column, and elements of the adjacency matrix.

Dynamic graph system for a semantic database

DOEpatents

Mizell, David

2015-01-27

A method and system in a computer system for dynamically providing a graphical representation of a data store of entries via a matrix interface is disclosed. A dynamic graph system provides a matrix interface that exposes to an application program a graphical representation of data stored in a data store such as a semantic database storing triples. To the application program, the matrix interface represents the graph as a sparse adjacency matrix that is stored in compressed form. Each entry of the data store is considered to represent a link between nodes of the graph. Each entry has a first field and a second field identifying the nodes connected by the link and a third field with a value for the link that connects the identified nodes. The first, second, and third fields represent the rows, column, and elements of the adjacency matrix.

Competence formation of engineering directions students in the field of energy saving as a way to create new generation technologies

NASA Astrophysics Data System (ADS)

Gilmanshin, I. R.; Gilmanshina, S. I.

2017-09-01

The urgency of the formation of competence in the field of energy saving in the process of studying engineering and technical disciplines at the university is substantiated. The author’s definition of the competence in the field of energy saving is given, allowing to consider the necessity of its formation among students - future engineers as a way to create technologies of a new generation. The essence of this competence is revealed. The system of work, pedagogical conditions and technologies of its formation in the conditions of the federal university is substantiated.

Results of research and commercial production of shale oil in Bazhenov formation on Ai-Pimskoe field

NASA Astrophysics Data System (ADS)

Sarancha, A. V.; Shuldikova, N. S.; Mayer, A. V.; Sumin, A. N.

2017-10-01

A large number of articles devoted to Bazhenov Formation appeared in Russian scientific and technical journals, aimed at specialists in of oil and gas fields development over the last 5 - 10 years. This is due to the fact that traditional hydrocarbon resources are gradually reducing, making oil companies pay attention to shale oil; the largest deposits in the Russian Federation are in Bazhenov Formation. The main purpose of this article is to highlight results obtained during the development of Bazhenov Formation on Ai-Pimskoe field in Western Siberia.

A pilot evaluation of text display formats for weather information in the cockpit

DOT National Transportation Integrated Search

1995-10-01

This study focuses on the weather (WX) services portion of Data Link. A : two-phase evaluation was conducted with 16 air transport (ATP) and general : aviation (GA) pilots. The pilots evaluated four data formatting options and : four data entry metho...

Publisher Correction: Bottom-up linking of carbon markets under far-sighted cap coordination and reversibility

NASA Astrophysics Data System (ADS)

Heitzig, Jobst; Kornek, Ulrike

2018-06-01

In the PDF version of this Article originally published, in equation (6) gi' was incorrectly formatted as gi', and at the end of the Methods section wi was incorrectly formatted as wi. These have now been corrected.

The role of Internal Solitary Waves on deep-water sedimentary processes: the case of up-slope migrating sediment waves off the Messina Strait.

PubMed

Droghei, R; Falcini, F; Casalbore, D; Martorelli, E; Mosetti, R; Sannino, G; Santoleri, R; Chiocci, F L

2016-11-03

Subaqueous, asymmetric sand waves are typically observed in marine channel/canyon systems, tidal environments, and continental slopes exposed to strong currents, where they are formed by current shear resulting from a dominant unidirectional flow. However, sand-wave fields may be readily observed in marine environments where no such current exists; the physical processes driving their formation are enigmatic or not well understood. We propose that internal solitary waves (ISWs) induced by tides can produce an effective, unidirectional boundary "current" that forms asymmetric sand waves. We test this idea by examining a sand-wave field off the Messina Strait, where we hypothesize that ISWs formed at the interface between intermediate and surface waters are refracted by topography. Hence, we argue that the deflected pattern (i.e., the depth-dependent orientation) of the sand-wave field is due to refraction of such ISWs. Combining field observations and numerical modelling, we show that ISWs can account for three key features: ISWs produce fluid velocities capable of mobilizing bottom sediments; the predicted refraction pattern resulting from the interaction of ISWs with bottom topography matches the observed deflection of the sand waves; and predicted migration rates of sand waves match empirical estimates. This work shows how ISWs may contribute to sculpting the structure of continental margins and it represents a promising link between the geological and oceanographic communities.

The role of Internal Solitary Waves on deep-water sedimentary processes: the case of up-slope migrating sediment waves off the Messina Strait

NASA Astrophysics Data System (ADS)

Droghei, R.; Falcini, F.; Casalbore, D.; Martorelli, E.; Mosetti, R.; Sannino, G.; Santoleri, R.; Chiocci, F. L.

2016-11-01

Subaqueous, asymmetric sand waves are typically observed in marine channel/canyon systems, tidal environments, and continental slopes exposed to strong currents, where they are formed by current shear resulting from a dominant unidirectional flow. However, sand-wave fields may be readily observed in marine environments where no such current exists; the physical processes driving their formation are enigmatic or not well understood. We propose that internal solitary waves (ISWs) induced by tides can produce an effective, unidirectional boundary “current” that forms asymmetric sand waves. We test this idea by examining a sand-wave field off the Messina Strait, where we hypothesize that ISWs formed at the interface between intermediate and surface waters are refracted by topography. Hence, we argue that the deflected pattern (i.e., the depth-dependent orientation) of the sand-wave field is due to refraction of such ISWs. Combining field observations and numerical modelling, we show that ISWs can account for three key features: ISWs produce fluid velocities capable of mobilizing bottom sediments; the predicted refraction pattern resulting from the interaction of ISWs with bottom topography matches the observed deflection of the sand waves; and predicted migration rates of sand waves match empirical estimates. This work shows how ISWs may contribute to sculpting the structure of continental margins and it represents a promising link between the geological and oceanographic communities.

Chirality- and sequence-selective successive self-sorting via specific homo- and complementary-duplex formations

PubMed Central

Makiguchi, Wataru; Tanabe, Junki; Yamada, Hidekazu; Iida, Hiroki; Taura, Daisuke; Ousaka, Naoki; Yashima, Eiji

2015-01-01

Self-recognition and self-discrimination within complex mixtures are of fundamental importance in biological systems, which entirely rely on the preprogrammed monomer sequences and homochirality of biological macromolecules. Here we report artificial chirality- and sequence-selective successive self-sorting of chiral dimeric strands bearing carboxylic acid or amidine groups joined by chiral amide linkers with different sequences through homo- and complementary-duplex formations. A mixture of carboxylic acid dimers linked by racemic-1,2-cyclohexane bis-amides with different amide sequences (NHCO or CONH) self-associate to form homoduplexes in a completely sequence-selective way, the structures of which are different from each other depending on the linker amide sequences. The further addition of an enantiopure amide-linked amidine dimer to a mixture of the racemic carboxylic acid dimers resulted in the formation of a single optically pure complementary duplex with a 100% diastereoselectivity and complete sequence specificity stabilized by the amidinium–carboxylate salt bridges, leading to the perfect chirality- and sequence-selective duplex formation. PMID:26051291

Moulin Migration and Development on the Greenland Ice Sheet

NASA Astrophysics Data System (ADS)

Chu, V. W.; Yang, L.

2017-12-01

Extensive river networks that terminate into moulins efficiently drain the surface of the Greenland ice sheet. These river moulins connect surface meltwater to englacial and subglacial drainage networks, where increased meltwater can enhance ice sliding dynamics. Previous moulin studies were limited to small geographic areas using field observations and/or high-resolution aerial/satellite imagery, or to medium-resolution satellite imagery for larger areas. In this study, high-resolution moulin maps created from WorldView-1/2/3 imagery near Russell Glacier in southwest Greenland show development of moulins and their migration between 2012 and 2015. Moulins are mapped and categorized as being located: in crevasse fields, along a single ice fracture, within drained lake basins, or having no visible formation mechanism. A majority of moulins mapped in 2015 (73%) are linked to moulins in 2012 and are analysed for their movement patterns and compared to ice velocity and strain rates. New moulins most commonly form in crevassed, thinner ice near the ice sheet edge, but significant quantities also develop at higher elevations (22% above 1300 m elevation).

The impact on UT/LS cirrus clouds in the CAM/CARMA model using a new interactive aerosol parameterization.

NASA Astrophysics Data System (ADS)

Maloney, C.; Toon, B.; Bardeen, C.

2017-12-01

Recent studies indicate that heterogeneous nucleation may play a large role in cirrus cloud formation in the UT/LS, a region previously thought to be primarily dominated by homogeneous nucleation. As a result, it is beneficial to ensure that general circulation models properly represent heterogeneous nucleation in ice cloud simulations. Our work strives towards addressing this issue in the NSF/DOE Community Earth System Model's atmospheric model, CAM. More specifically we are addressing the role of heterogeneous nucleation in the coupled sectional microphysics cloud model, CARMA. Currently, our CAM/CARMA cirrus model only performs homogenous ice nucleation while ignoring heterogeneous nucleation. In our work, we couple the CAM/CARMA cirrus model with the Modal Aerosol Model (MAM). By combining the aerosol model with CAM/CARMA we can both account for heterogeneous nucleation, as well as directly link the sulfates used for homogeneous nucleation to computed fields instead of the current static field being utilized. Here we present our initial results and compare our findings to observations from the long running CALIPSO and MODIS satellite missions.

Deciphering Debris Disk Structure with the Submillimeter Array

NASA Astrophysics Data System (ADS)

MacGregor, Meredith Ann

2018-01-01

More than 20% of nearby main sequence stars are surrounded by dusty disks continually replenished via the collisional erosion of planetesimals, larger bodies similar to asteroids and comets in our own Solar System. The material in these ‘debris disks’ is directly linked to the larger bodies such as planets in the system. As a result, the locations, morphologies, and physical properties of dust in these disks provide important probes of the processes of planet formation and subsequent dynamical evolution. Observations at millimeter wavelengths are especially critical to our understanding of these systems, since they are dominated by larger grains that do not travel far from their origin and therefore reliably trace the underlying planetesimal distribution. The Submillimeter Array (SMA) plays a key role in advancing our understanding of debris disks by providing sensitivity at the short baselines required to determine the structure of wide-field disks, such as the HR 8799 debris disk. Many of these wide-field disks are among the closest systems to us, and will serve as cornerstone templates for the interpretation of more distant, less accessible systems.

Water vapor isotopic measurements from the Atmospheric Radiation Measurement site on Graciosa Island, Azores

NASA Astrophysics Data System (ADS)

Delp, J. M.; Galewsky, J.

2017-12-01

Stable isotopic measurements of water vapor can potentially constrain the processes that govern the formation of low-clouds and how their distribution may change as the climate warms. Using off-axis integrated cavity output spectroscopy, in-situ water vapor isotopic measurements will be collected for a period of one year (beginning August 2017) at the US Department of Energy (DOE) Atmospheric Radiation Measurement (ARM) site in the Eastern North Atlantic (ENA) located on Graciosa Island, Azores. The Azores location within the ENA is a prime setting for studying low-cloud processes. After correcting for humidity-dependent biases and normalizing the measurements to the VSMOW-SLAP scale, the measurements from the first several months of the water vapor isotopic analyzer's deployment will be compared to complementary datasets from the suite of instruments at the DOE site, including twice-daily soundings, aerosol instrumentation, and cloud radars, with the purpose of determining links between local stratocumulus and precipitation processes and their impact on the stable isotopic composition of atmospheric water vapor. The results of this study will potentially provide a new approach for linking field observations with climate models and may help better constrain the uncertainties associated with low-cloud feedbacks.

Use of CCSDS Packets Over SpaceWire to Control Hardware

NASA Technical Reports Server (NTRS)

Haddad, Omar; Blau, Michael; Haghani, Noosha; Yuknis, William; Albaijes, Dennis

2012-01-01

For the Lunar Reconnaissance Orbiter, the Command and Data Handling subsystem consisted of several electronic hardware assemblies that were connected with SpaceWire serial links. Electronic hardware would be commanded/controlled and telemetry data was obtained using the SpaceWire links. Prior art focused on parallel data buses and other types of serial buses, which were not compatible with the SpaceWire and the core flight executive (CFE) software bus. This innovation applies to anything that utilizes both SpaceWire networks and the CFE software. The CCSDS (Consultative Committee for Space Data Systems) packet contains predetermined values in its payload fields that electronic hardware attached at the terminus of the SpaceWire node would decode, interpret, and execute. The hardware s interpretation of the packet data would enable the hardware to change its state/configuration (command) or generate status (telemetry). The primary purpose is to provide an interface that is compatible with the hardware and the CFE software bus. By specifying the format of the CCSDS packet, it is possible to specify how the resulting hardware is to be built (in terms of digital logic) that results in a hardware design that can be controlled by the CFE software bus in the final application

Improved self-healing of polyethylene/carbon black nanocomposites by their shape memory effect.

PubMed

Wang, Xiaoyan; Zhao, Jun; Chen, Min; Ma, Lan; Zhao, Xiaodong; Dang, Zhi-Min; Wang, Zhenwen

2013-02-07

In this work, the improved self-healing of cross-linked polyethylene (PE) (cPE)/carbon black (CB) nanocomposites by their shape memory effect (SME) is investigated. CB nanoparticles are found to be homogeneously dispersed in the PE matrix and significantly increase the strength of the materials. Compared with the breaking of linear PE (lPE) at the melting temperature (T(m)), the cPE and cPE/CB nanocomposites still have high strength above T(m) due to the formation of networks. The cPE and cPE/CB nanocomposites show both high strain fixity ratio (R(f)) and high strain recovery ratio (R(r)). Crystallization-induced elongation is observed for all the prepared shape memory polymer (SMP) materials and the effect becomes less remarkable with increasing volume fraction of CB nanoparticles (v(CB)). The scratch self-healing tests show that the cross-linking of PE matrix, the addition of CB nanoparticles, and the previous stretching in the direction perpendicular to the scratch favor the closure of the scratch and its complete healing. This SME-aided self-healing could have potential applications in diverse fields such as coating and structure materials.

The importance of mineralogical input into geometallurgy programs

USGS Publications Warehouse

Hoal, K. Olson; Woodhead, J.D.; Smith, Kathleen S.

2013-01-01

Mineralogy is the link between ore formation and ore extraction. It is the most fundamental component of geomet programs, and the most important aspect of a life-of-project approach to mineral resource projects. Understanding orebodies is achieved by understanding the mineralogy and texture of the materials, throughout the process, because minerals hold the information required to unlock the value they contain. Geomet mineralogy programs absolutely require the appropriate expertise and at least three steps of mineral characterisation prior to using semi-automated or other methods: field examination, thorough core logging, and optical microscopy. Economic geological inputs for orebody characterisation are necessary for orebody understanding, and are exemplified by current research in the Zambian Copperbelt, where revised sequence stratigraphy and understanding of alteration, metasomatism and metamorphism can be used to predict topical issues at mine sites. Environmental inputs for sustainability characterisation are demonstrated by recent work on tailings from the Leadville, Colorado, USA area, including linking mineralogy to water quality issues. Risk assessments need to take into account the technical uncertainties around geological variability and mineral extractability, and mineralogy is the only metric that can be used to make this risk contribution.

Epidemic dynamics on a risk-based evolving social network

NASA Astrophysics Data System (ADS)

Antwi, Shadrack; Shaw, Leah

2013-03-01

Social network models have been used to study how behavior affects the dynamics of an infection in a population. Motivated by HIV, we consider how a trade-off between benefits and risks of sexual connections determine network structure and disease prevalence. We define a stochastic network model with formation and breaking of links as changes in sexual contacts. Each node has an intrinsic benefit its neighbors derive from connecting to it. Nodes' infection status is not apparent to others, but nodes with more connections (higher degree) are assumed more likely to be infected. The probability to form and break links is determined by a payoff computed from the benefit and degree-dependent risk. The disease is represented by a SI (susceptible-infected) model. We study network and epidemic evolution via Monte Carlo simulation and analytically predict the behavior with a heterogeneous mean field approach. The dependence of network connectivity and infection threshold on parameters is determined, and steady state degree distribution and epidemic levels are obtained. We also study a situation where system-wide infection levels alter perception of risk and cause nodes to adjust their behavior. This is a case of an adaptive network, where node status feeds back to change network geometry.

Making Data Mobile: The Hubble Deep Field Academy iPad app

NASA Astrophysics Data System (ADS)

Eisenhamer, Bonnie; Cordes, K.; Davis, S.; Eisenhamer, J.

2013-01-01

Many school districts are purchasing iPads for educators and students to use as learning tools in the classroom. Educators often prefer these devices to desktop and laptop computers because they offer portability and an intuitive design, while having a larger screen size when compared to smart phones. As a result, we began investigating the potential of adapting online activities for use on Apple’s iPad to enhance the dissemination and usage of these activities in instructional settings while continuing to meet educators’ needs. As a pilot effort, we are developing an iPad app for the “Hubble Deep Field Academy” - an activity that is currently available online and commonly used by middle school educators. The Hubble Deep Field Academy app features the HDF-North image while centering on the theme of how scientists use light to explore and study the universe. It also includes features such as embedded links to vocabulary, images and videos, teacher background materials, and readings about Hubble’s other deep field surveys. It is our goal is to impact students’ engagement in STEM-related activities, while enhancing educators’ usage of NASA data via new and innovative mediums. We also hope to develop and share lessons learned with the E/PO community that can be used to support similar projects. We plan to test the Hubble Deep Field Academy app during the school year to determine if this new activity format is beneficial to the education community.

Plasmonic core-satellite assemblies with high stability and yield (Conference Presentation)

NASA Astrophysics Data System (ADS)

Huang, Li-Ching; Lin, Tien-Hsin; Liu, Zhi-Yan; Chen, Jyun-Hao; Wang, Yi-Chen; Chen, Shiuan-Yeh

2016-09-01

Plasmonic structures are attractive due to their optical properties in the near-field and far-field. In the near-field, the enhanced field they generated strongly interacts with materials in proximity to the surface and even produces the quantum hybrid states in the strong coupling regime. In the far-field, the larger scattering cross section of plasmonic particles provides better contrast for tissue imaging. In addition, the strong absorption can generate substantial amount of heat for cancer cell elimination. These optical properties are usually engineered through tuning the size and morphology of individual nanoparticles by various chemical synthesis methods. The alternative way is to use coupled structure based on existing particles. The molecule-linked structure is a common way for 3D plasmonic materials. However, to produce a stable coupled structure in the solution phase is challenging. The formation of linkage between linker molecules is usually time-consuming and at low efficiency. Increasing the concentration of linker molecules may raise the reaction speed but also result in the random aggregation of particles. In this work, a polyelectrolyte coating is used to connect spherical nanoparticles of different sizes to form core-satellite assemblies (CSA). The coupled core-satellite structure is formed almost immediately after the solutions of two particles are mixed. The output efficiency is nearly 100%. The CSA is robust under the additional silica shell coating and strong laser illumination. The stability of this CSA is confirmed by the Raman spectra and this assembly can potentially be used as Raman tags.

Becoming Ecopolitical: Some Mythic Links in Curriculum Renewal.

ERIC Educational Resources Information Center

Gough, Noel

This paper explores some possible productive links between ecology and education, with particular reference to the ethical position described by the term "deep ecology" and to empirical research in perceptual psychology that has led to the formation of ecological theories of perception. It is suggested that these ecological understandings support…

Intelligent printing system with AMPAC: boot program for printing machine with AMPAC

NASA Astrophysics Data System (ADS)

Yuasa, Tomonori; Mishina, Hiromichi

2000-12-01

The database AMPAC proposes the simple and unified format to describe single parameter of whole field of design, production and management. The database described by the format can be used commonly in any field connected by the network production system, since the description accepts any parameter in any fields and is field independent definition.

Formal, Non-Formal and Informal Learning in the Sciences

ERIC Educational Resources Information Center

Ainsworth, Heather L.; Eaton, Sarah Elaine

2010-01-01

This research report investigates the links between formal, non-formal and informal learning and the differences between them. In particular, the report aims to link these notions of learning to the field of sciences and engineering in Canada and the United States, including professional development of adults working in these fields. It offers…

Telemetry Standards, RCC Standard 106-17. Chapter 9. Telemetry Attributes Transfer Standard

DTIC Science & Technology

2017-07-01

or the direct recorder track/ channel MIL-STD-1553 or ARINC 429 bus format characteristics. (4) Message Data Attributes: Specifies the message...R group to the P group is from the Channel Data Link Name (R) to the Data Link Name (P). g. The tie from the R group to the B group is from the... Channel Data Link Name or Sub- Channel Name (R) to the Data Link Name (B). h. The tie from the R group to the Message Data group (S) is from the Channel

Adaptive control of a manipulator with a flexible link

NASA Technical Reports Server (NTRS)

Yang, Y. P.; Gibson, J. S.

1988-01-01

An adaptive controller for a manipulator with one rigid link and one flexible link is presented. The performance and robustness of the controller are demonstrated by numerical simulation results. In the simulations, the manipulator moves in a gravitational field and a finite element model represents the flexible link.

Mini-CME eruptions in a flux emergence event in a coronal hole environment

NASA Astrophysics Data System (ADS)

Galsgaard, K.; Moreno-Insertis, F.

2016-10-01

Small scale jets are observed to take place at the interface between the open magnetic field in coronal holes and bipolar magnetic field concentrations. A fraction of these shows an eruptive behavior, where a combination of cold dense and hot light plasma has been observed to propagate out along the jet region, combining traditional jets with what looks like the eruption of mini-CMEs. Here we discuss a simple model scenario for the explosive energy release process that leads to a mixture of hot and cold plasma being accelerated upwards simultaneously. The model explains both the typical steady state inverted-Y jet and the subsequent mini-CME eruptions found in blowout jets. The numerical experiment consists of a buoyant unstable flux rope that emerges into an overlying slanted coronal field, thereby creating a bipolar magnetic field distribution in the photosphere with coronal loops linking the polarities. Reconnection between the emerged and preexisting magnetic systems including the launching of a classical inverted-Y jet. The experiment shows that this simple model provides for a very complicated dynamical behavior in its late phases. Five independent mini-CME eruptions follow the initial near steady-state jet phase. The first one is a direct consequence of the reconnection of the emerged magnetic flux, is mediated by the formation of a strongly sheared arcade followed by a tether-cutting reconnection process, and leads to the eruption of a twisted flux rope. The final four explosive eruptions, instead, are preceded by the formation of a twisted torus-like flux rope near the strong magnetic concentrations at the photosphere. As the tube center starts emerging an internal current sheet is formed below it. This sheet experiences a tether cutting process that provides the important upwards kick of the newly formed mini-CME structure. As the fast rising cold and dense tube interacts with the overlying magnetic field, it reconnects at different spatial locations, either through a null region or through a local strong shear region without nulls. The restructuring of the magnetic field lines generate magneto-acoustic waves that transport twist and cold plasma out along the less stressed parts of the newly reconnected field lines. The emphasis of the talk will be on the physical forces responsible for the initial flux tube rising and the effects and reasons for the following destruction of the mini-CMEs.

The Synthesis and Origin of the Pectic Polysaccharide Rhamnogalacturonan II – Insights from Nucleotide Sugar Formation and Diversity

PubMed Central

Bar-Peled, Maor; Urbanowicz, Breeanna R.; O’Neill, Malcolm A.

2012-01-01

There is compelling evidence showing that the structurally complex pectic polysaccharide rhamnogalacturonan II (RG-II) exists in the primary cell wall as a borate cross-linked dimer and that this dimer is required for the assembly of a functional wall and for normal plant growth and development. The results of several studies have also established that RG-II structure and cross-linking is conserved in vascular plants and that RG-II likely appeared early in the evolution of land plants. Two features that distinguish RG-II from other plant polysaccharides are that RG-II is composed of 13 different glycoses linked to each other by up to 22 different glycosidic linkages and that RG-II is the only polysaccharide known to contain both apiose and aceric acid. Thus, one key event in land plant evolution was the emergence of genes encoding nucleotide sugar biosynthetic enzymes that generate the activated forms of apiose and aceric acid required for RG-II synthesis. Many of the genes involved in the generation of the nucleotide sugars used for RG-II synthesis have been functionally characterized. By contrast, only one glycosyltransferase involved in the assembly of RG-II has been identified. Here we provide an overview of the formation of the activated sugars required for RG-II synthesis and point to the possible cellular and metabolic processes that could be involved in assembling and controlling the formation of a borate cross-linked RG-II molecule. We discuss how nucleotide sugar synthesis is compartmentalized and how this may control the flux of precursors to facilitate and regulate the formation of RG-II. PMID:22639675

Influence of toroidal magnetic field in multiaccreting tori

NASA Astrophysics Data System (ADS)

Pugliese, D.; Montani, G.

2018-06-01

We analysed the effects of a toroidal magnetic field in the formation of several magnetized accretion tori, dubbed as ringed accretion discs (RADs), orbiting around one central Kerr supermassive black hole (SMBH) in active galactic nuclei (AGNs), where both corotating and counterotating discs are considered. Constraints on tori formation and emergence of RADs instabilities, accretion on to the central attractor and tori collision emergence, are investigated. The results of this analysis show that the role of the central BH spin-mass ratio, the magnetic field and the relative fluid rotation and tori rotation with respect the central BH, are crucial elements in determining the accretion tori features, providing ultimately evidence of a strict correlation between SMBH spin, fluid rotation, and magnetic fields in RADs formation and evolution. More specifically, we proved that magnetic field and discs rotation are in fact strongly constrained, as tori formation and evolution in RADs depend on the toroidal magnetic fields parameters. Eventually, this analysis identifies specific classes of tori, for restrict ranges of magnetic field parameter, that can be observed around some specific SMBHs identified by their dimensionless spin.

Foreign exchange market as a lattice gauge theory

NASA Astrophysics Data System (ADS)

Young, K.

1999-10-01

A simple model of the foreign exchange market is exactly a lattice gauge theory. Exchange rates are the exponentials of gauge potentials defined on spatial links while interest rates are related to gauge potentials on temporal links. Arbitrage opportunities are given by nonzero values of the gauge-invariant field tensor or curvature defined on closed loops. Arbitrage opportunities involving cross-rates at one time are "magnetic fields," while arbitrage opportunities involving future contracts are "electric fields."

Deletion of nfnAB in Thermoanaerobacterium saccharolyticum and Its Effect on Metabolism

DOE PAGES

Lo, Jonathan; Zheng, Tianyong; Olson, Daniel G.; ...

2015-06-29

NfnAB catalyzes the reversible transfer of electrons from reduced ferredoxin and NADH to 2 NADP +. The NfnAB complex has been hypothesized to be the main enzyme for ferredoxin oxidization in strains of Thermoanaerobacterium saccharolyticum engineered for increased ethanol production. NfnAB complex activity was detectable in crude cell extracts of T. saccharolyticum. In this paper, activity was also detected using activity staining of native PAGE gels. The nfnAB gene was deleted in different strains of T. saccharolyticum to determine its effect on end product formation. In wild-type T. saccharolyticum, deletion of nfnAB resulted in a 46% increase in H 2more » formation but otherwise little change in other fermentation products. In two engineered strains with 80% theoretical ethanol yield, loss of nfnAB caused two different responses: in one strain, ethanol yield decreased to about 30% of the theoretical value, while another strain had no change in ethanol yield. Biochemical analysis of cell extracts showed that the ΔnfnAB strain with decreased ethanol yield had NADPH-linked alcohol dehydrogenase (ADH) activity, while the ΔnfnAB strain with unchanged ethanol yield had NADH-linked ADH activity. Deletion of nfnAB caused loss of NADPH-linked ferredoxin oxidoreductase activity in all cell extracts. Significant NADH-linked ferredoxin oxidoreductase activity was seen in all cell extracts, including those that had lost nfnAB. This suggests that there is an unidentified NADH:ferredoxin oxidoreductase (distinct from nfnAB) playing a role in ethanol formation. The NfnAB complex plays a key role in generating NADPH in a strain that had become reliant on NADPH-ADH activity. Importance: Thermophilic anaerobes that can convert biomass-derived sugars into ethanol have been investigated as candidates for biofuel formation. Many anaerobes have been genetically engineered to increase biofuel formation; however, key aspects of metabolism remain unknown and poorly understood. One example is the mechanism for ferredoxin oxidation and transfer of electrons to NAD(P) +. The electron-bifurcating enzyme complex NfnAB is known to catalyze the reversible transfer of electrons from reduced ferredoxin and NADH to 2 NADP + and is thought to play key roles linking NAD(P)(H) metabolism with ferredoxin metabolism. Finally, we report the first deletion of nfnAB and demonstrate a role for NfnAB in metabolism and ethanol formation in Thermoanaerobacterium saccharolyticum and show that this may be an important feature among other thermophilic ethanologenic anaerobes.« less

Complex formation between the protein components of methane monooxygenase from Methylosinus trichosporium OB3b. Identification of sites of component interaction.

PubMed

Fox, B G; Liu, Y; Dege, J E; Lipscomb, J D

1991-01-05

Kinetic, spectroscopic, and chemical evidence for the formation of specific catalytically essential complexes between the three protein components of the soluble form of methane monooxygenase from Methylosinus trichosporium OB3b is reported. The effects of the concentrations of the reductase and component B on the hydroxylation activity of the reconstituted enzyme system has been numerically simulated based on a kinetic model which assumes formation of multiple high affinity complexes with the hydroxylase component during catalysis. The formation of several of these complexes has been directly demonstrated. By using EPR spectroscopy, the binding of approximately 2 mol of component B/mol of hydroxylase (subunit structure (alpha beta gamma)2) is shown to significantly change the electronic environment of the mu-(H/R)-oxo-bridged binuclear iron cluster of the hydroxylase in both the mixed valent (Fe(II).Fe(III)) and fully reduced (Fe(II).Fe(II)) states. Protein-protein complexes between the reductase and component B as well as between the reductase and hydroxylase have been shown to form by monitoring quenching of the tryptophan fluorescence spectrum of either the component B (KD approximately 0.4 microM) or hydroxylase (two binding sites, KDa approximately 10 nM, KDb approximately 8 microM). The observed KD values are in agreement with the best fit values from the kinetic simulation. Through the use of the covalent zero length cross-linking reagent 1-ethyl-3-(3-dimethylaminopropyl)-carbodiimide (EDC), the binding sites of the component B and reductase were shown to be on the hydroxylase alpha and beta subunits, respectively. The alpha and beta subunits of the hydroxylase are cross-linked by EDC suggesting that they are juxtaposed. EDC also caused the rapid loss of the ability of the monomeric component B to stimulate the hydroxylation reaction suggesting that cross-linking of reactive groups on the protein surface had occurred. This effect was inhibited by the presence of hydroxylase and was accompanied by a loss of the ability of the component B to bind to the hydroxylase. Thus, formation of a component B-hydroxylase complex is apparently required for effective catalysis linked to NADH oxidation. When present in concentrations greater than required to saturate the initial hydroxylase complex, component B inhibited both the rate of the enzymic reaction and the cross-linking of the reductase to the hydroxylase. This suggests that a second complex involving component B can form that negatively regulates catalysis by preventing formation of the reductase-hydroxylase complex.

Auditory, visual, and bimodal data link displays and how they support pilot performance.

PubMed

Steelman, Kelly S; Talleur, Donald; Carbonari, Ronald; Yamani, Yusuke; Nunes, Ashley; McCarley, Jason S

2013-06-01

The design of data link messaging systems to ensure optimal pilot performance requires empirical guidance. The current study examined the effects of display format (auditory, visual, or bimodal) and visual display position (adjacent to instrument panel or mounted on console) on pilot performance. Subjects performed five 20-min simulated single-pilot flights. During each flight, subjects received messages from a simulated air traffic controller. Messages were delivered visually, auditorily, or bimodally. Subjects were asked to read back each message aloud and then perform the instructed maneuver. Visual and bimodal displays engendered lower subjective workload and better altitude tracking than auditory displays. Readback times were shorter with the two unimodal visual formats than with any of the other three formats. Advantages for the unimodal visual format ranged in size from 2.8 s to 3.8 s relative to the bimodal upper left and auditory formats, respectively. Auditory displays allowed slightly more head-up time (3 to 3.5 seconds per minute) than either visual or bimodal displays. Position of the visual display had only modest effects on any measure. Combined with the results from previous studies by Helleberg and Wickens and Lancaster and Casali the current data favor visual and bimodal displays over auditory displays; unimodal auditory displays were favored by only one measure, head-up time, and only very modestly. Data evinced no statistically significant effects of visual display position on performance, suggesting that, contrary to expectations, the placement of a visual data link display may be of relatively little consequence to performance.

Grand Minima and Equatorward Propagation in a Cycling Stellar Convective Dynamo

NASA Astrophysics Data System (ADS)

Augustson, Kyle C.; Brun, Allan Sacha; Miesch, Mark; Toomre, Juri

2015-08-01

The 3-D magnetohydrodynamic (MHD) Anelastic Spherical Harmonic (ASH) code, using slope-limited diffusion, is employed to capture convective and dynamo processes achieved in a global-scale stellar convection simulation for a model solar-mass star rotating at three times the solar rate. The dynamo generated magnetic fields possesses many time scales, with a prominent polarity cycle occurring roughly every 6.2 years. The magnetic field forms large-scale toroidal wreaths, whose formation is tied to the low Rossby number of the convection in this simulation. The polarity reversals are linked to the weakened differential rotation and a resistive collapse of the large-scale magnetic field. An equatorial migration of the magnetic field is seen, which is due to the strong modulation of the differential rotation rather than a dynamo wave. A poleward migration of magnetic flux from the equator eventually leads to the reversal of the polarity of the high-latitude magnetic field. This simulation also enters an interval with reduced magnetic energy at low latitudes lasting roughly 16 years (about 2.5 polarity cycles), during which the polarity cycles are disrupted and after which the dynamo recovers its regular polarity cycles. An analysis of this grand minimum reveals that it likely arises through the interplay of symmetric and antisymmetric dynamo families. This intermittent dynamo state potentially results from the simulations relatively low magnetic Prandtl number. A mean-field-based analysis of this dynamo simulation demonstrates that it is of the α-Ω type. The time scales that appear to be relevant to the magnetic polarity reversal are also identified.

Grand Minima and Equatorward Propagation in a Cycling Stellar Convective Dynamo

NASA Astrophysics Data System (ADS)

Augustson, Kyle; Brun, Allan Sacha; Miesch, Mark; Toomre, Juri

2015-08-01

The 3D MHD Anelastic Spherical Harmonic code, using slope-limited diffusion, is employed to capture convective and dynamo processes achieved in a global-scale stellar convection simulation for a model solar-mass star rotating at three times the solar rate. The dynamo-generated magnetic fields possesses many timescales, with a prominent polarity cycle occurring roughly every 6.2 years. The magnetic field forms large-scale toroidal wreaths, whose formation is tied to the low Rossby number of the convection in this simulation. The polarity reversals are linked to the weakened differential rotation and a resistive collapse of the large-scale magnetic field. An equatorial migration of the magnetic field is seen, which is due to the strong modulation of the differential rotation rather than a dynamo wave. A poleward migration of magnetic flux from the equator eventually leads to the reversal of the polarity of the high-latitude magnetic field. This simulation also enters an interval with reduced magnetic energy at low latitudes lasting roughly 16 years (about 2.5 polarity cycles), during which the polarity cycles are disrupted and after which the dynamo recovers its regular polarity cycles. An analysis of this grand minimum reveals that it likely arises through the interplay of symmetric and antisymmetric dynamo families. This intermittent dynamo state potentially results from the simulation’s relatively low magnetic Prandtl number. A mean-field-based analysis of this dynamo simulation demonstrates that it is of the α-Ω type. The timescales that appear to be relevant to the magnetic polarity reversal are also identified.

GRAND MINIMA AND EQUATORWARD PROPAGATION IN A CYCLING STELLAR CONVECTIVE DYNAMO

DOE Office of Scientific and Technical Information (OSTI.GOV)

Augustson, Kyle; Miesch, Mark; Brun, Allan Sacha

2015-08-20

The 3D MHD Anelastic Spherical Harmonic code, using slope-limited diffusion, is employed to capture convective and dynamo processes achieved in a global-scale stellar convection simulation for a model solar-mass star rotating at three times the solar rate. The dynamo-generated magnetic fields possesses many timescales, with a prominent polarity cycle occurring roughly every 6.2 years. The magnetic field forms large-scale toroidal wreaths, whose formation is tied to the low Rossby number of the convection in this simulation. The polarity reversals are linked to the weakened differential rotation and a resistive collapse of the large-scale magnetic field. An equatorial migration of themore » magnetic field is seen, which is due to the strong modulation of the differential rotation rather than a dynamo wave. A poleward migration of magnetic flux from the equator eventually leads to the reversal of the polarity of the high-latitude magnetic field. This simulation also enters an interval with reduced magnetic energy at low latitudes lasting roughly 16 years (about 2.5 polarity cycles), during which the polarity cycles are disrupted and after which the dynamo recovers its regular polarity cycles. An analysis of this grand minimum reveals that it likely arises through the interplay of symmetric and antisymmetric dynamo families. This intermittent dynamo state potentially results from the simulation’s relatively low magnetic Prandtl number. A mean-field-based analysis of this dynamo simulation demonstrates that it is of the α-Ω type. The timescales that appear to be relevant to the magnetic polarity reversal are also identified.« less

Stripe formation in an immiscible polymer blend under electric and shear-flow fields

NASA Astrophysics Data System (ADS)

Na, Yang-Ho; Shibuya, Tetsunori; Ujiie, Seiji; Nagaya, Tomoyuki; Orihara, Hiroshi

2008-04-01

We found a stripe formation in an emulsion of a liquid crystalline polymer (LCP) and a machine oil (OIL) in electric and shear fields. Through the simultaneous measurement with a confocal scanning laser microscope and a rheometer, it was clearly shown that the formation of stripes, which are periodically arrayed, leads to the increase of the shear stress. The droplets, which are one component of the emulsion, start to be connected at low electric fields and then change into the stripes with the increase of electric field. Finally, a three-dimensional network is formed at high electric fields. The period and fluctuation of the stripe structure were also investigated in detail.

Protocol for Communication Networking for Formation Flying

NASA Technical Reports Server (NTRS)

Jennings, Esther; Okino, Clayton; Gao, Jay; Clare, Loren

2009-01-01

An application-layer protocol and a network architecture have been proposed for data communications among multiple autonomous spacecraft that are required to fly in a precise formation in order to perform scientific observations. The protocol could also be applied to other autonomous vehicles operating in formation, including robotic aircraft, robotic land vehicles, and robotic underwater vehicles. A group of spacecraft or other vehicles to which the protocol applies could be characterized as a precision-formation- flying (PFF) network, and each vehicle could be characterized as a node in the PFF network. In order to support precise formation flying, it would be necessary to establish a corresponding communication network, through which the vehicles could exchange position and orientation data and formation-control commands. The communication network must enable communication during early phases of a mission, when little positional knowledge is available. Particularly during early mission phases, the distances among vehicles may be so large that communication could be achieved only by relaying across multiple links. The large distances and need for omnidirectional coverage would limit communication links to operation at low bandwidth during these mission phases. Once the vehicles were in formation and distances were shorter, the communication network would be required to provide high-bandwidth, low-jitter service to support tight formation-control loops. The proposed protocol and architecture, intended to satisfy the aforementioned and other requirements, are based on a standard layered-reference-model concept. The proposed application protocol would be used in conjunction with conventional network, data-link, and physical-layer protocols. The proposed protocol includes the ubiquitous Institute of Electrical and Electronics Engineers (IEEE) 802.11 medium access control (MAC) protocol to be used in the datalink layer. In addition to its widespread and proven use in diverse local-area networks, this protocol offers both (1) a random- access mode needed for the early PFF deployment phase and (2) a time-bounded-services mode needed during PFF-maintenance operations. Switching between these two modes could be controlled by upper-layer entities using standard link-management mechanisms. Because the early deployment phase of a PFF mission can be expected to involve multihop relaying to achieve network connectivity (see figure), the proposed protocol includes the open shortest path first (OSPF) network protocol that is commonly used in the Internet. Each spacecraft in a PFF network would be in one of seven distinct states as the mission evolved from initial deployment, through coarse formation, and into precise formation. Reconfiguration of the formation to perform different scientific observations would also cause state changes among the network nodes. The application protocol provides for recognition and tracking of the seven states for each node and for protocol changes under specified conditions to adapt the network and satisfy communication requirements associated with the current PFF mission phase. Except during early deployment, when peer-to-peer random access discovery methods would be used, the application protocol provides for operation in a centralized manner.

Synthetic Methods for Ester Bond Formation and Conformational Analysis of Ester-Containing Carbohydrates

NASA Astrophysics Data System (ADS)

Hackbusch, Sven

This dissertation encompasses work related to synthetic methods for the formation of ester linkages in organic compounds, as well as the investigation of the conformational influence of the ester functional group on the flexibility of inter-saccharide linkages, specifically, and the solution phase structure of ester-containing carbohydrate derivatives, in general. Stereoselective reactions are an important part of the field of asymmetric synthesis and an understanding of their underlying mechanistic principles is essential for rational method development. Here, the exploration of a diastereoselective O-acylation reaction on a trans-2-substituted cyclohexanol scaffold is presented, along with possible reasons for the observed reversal of stereoselectivity dependent on the presence or absence of an achiral amine catalyst. In particular, this work establishes a structure-activity relationship with regard to the trans-2-substituent and its role as a chiral auxiliary in the reversal of diastereoselectivity. In the second part, the synthesis of various ester-linked carbohydrate derivatives, and their conformational analysis is presented. Using multidimensional NMR experiments and computational methods, the compounds' solution-phase structures were established and the effect of the ester functional group on the molecules' flexibility and three-dimensional (3D) structure was investigated and compared to ether or glycosidic linkages. To aid in this, a novel Karplus equation for the C(sp2)OCH angle in ester-linked carbohydrates was developed on the basis of a model ester-linked carbohydrate. This equation describes the sinusoidal relationship between the C(sp2)OCH dihedral angle and the corresponding 3JCH coupling constant that can be determined from a J-HMBC NMR experiment. The insights from this research will be useful in describing the 3D structure of naturally occurring and lab-made ester-linked derivatives of carbohydrates, as well as guiding the de novo-design of carbohydrate based compounds with specific shape constraints for its use as enzyme inhibitors or similar targets. In addition, the above project led to the development of a methodology for the synthesis of symmetrical ester molecules from primary alcohols using a mild oxidative esterification reaction, which proceeds in hydrous solvents using a nitrosyl radical catalyst. The reaction could be performed with a variety of alcohols and the resulting compounds are of interest in the fragrance and flavor industries.

On the Formation and Properties of Interstrand DNA-DNA Cross-links Forged by Reaction of an Abasic Site With the Opposing Guanine Residue of 5′-CAp Sequences in Duplex DNA

PubMed Central

Johnson, Kevin M.; Price, Nathan E.; Wang, Jin; Fekry, Mostafa I.; Dutta, Sanjay; Seiner, Derrick R.; Wang, Yinsheng; Gates, Kent S.

2014-01-01

We recently reported that the aldehyde residue of an abasic (Ap) site in duplex DNA can generate an interstrand cross-link via reaction with a guanine residue on the opposing strand. This finding is intriguing because the highly deleterious nature of interstrand cross-links suggests that even small amounts of Ap-derived cross-links could make a significant contribution to the biological consequences stemming from the generation of Ap sites in cellular DNA. Incubation of 21-bp duplexes containing a central 5′-CAp sequence under conditions of reductive amination (NaCNBH3, pH 5.2) generated much higher yields of cross-linked DNA than reported previously. At pH 7, in the absence of reducing agents, these Ap-containing duplexes also produced cross-linked duplexes that were readily detected on denaturing polyacrylamide gels. Cross-link formation was not highly sensitive to reaction conditions and, once formed, the cross-link was stable to a variety of work-up conditions. Results of multiple experiments including MALDI-TOF mass spectrometry, gel mobility, methoxyamine capping of the Ap aldehyde, inosine-for-guanine replacement, hydroxyl radical footprinting, and LCMS/MS were consistent with a cross-linking mechanism involving reversible reaction of the Ap aldehyde residue with the N2-amino group of the opposing guanine residue in 5′-CAp sequences to generate hemiaminal, imine, or cyclic hemiaminal cross-links (7-10) that were irreversibly converted under conditions of reductive amination (NaCNBH3/pH 5.2) to a stable amine linkage. Further support for the importance of the exocyclic N2-amino group in this reaction was provided by an experiment showing that installation of a 2-aminopurine-thymine base pair at the cross-linking site produced high yields (15-30%) of a cross-linked duplex at neutral pH, in the absence of NaCNBH3. PMID:23215239

Star Formation History In Merging Galaxies

NASA Astrophysics Data System (ADS)

Chien, Li-Hsin

2009-01-01

Interacting and merging galaxies are believed to play an important role in many aspects of galactic evolution. Their violent interactions can trigger starbursts, which lead to formation of young globular clusters. Therefore the ages of these young globular clusters can be interpreted to yield the timing of interaction-triggered events, and thus provide a key to reconstruct the star formation history in merging galaxies. The link between galaxy interaction and star formation is well established, but the triggers of star formation in interacting galaxies are still not understood. To date there are two competing formulas that describe the star formation mechanism--density-dependent and shock-induced rules. Numerical models implementing the two rules predict significantly different star formation histories in merging galaxies. My dissertation combines these two distinct areas of astrophysics, stellar evolution and galactic dynamics, to investigate the star formation history in galaxies at various merging stages. Begin with NGC 4676 as an example, I will briefly describe its model and illustrate the idea of using the ages of clusters to constrain the modeling. The ages of the clusters are derived from spectra that were taken with multi-object spectroscopy on Keck. Using NGC 7252 as a second example, I will present a state of the art dynamical model which predicts NGC7252's star formation history and other properties. I will then show a detailed comparison and analysis between the clusters and the modeling. In the end, I will address this important link as the key to answer the fundamental question of my thesis: what is the trigger of star formation in merging galaxies?

Plasma-gun-assisted field-reversed configuration formation in a conical θ-pinch

DOE PAGES

Weber, T. E.; Intrator, T. P.; Smith, R. J.

2015-04-29

We show through injection of plasma via an annular array of coaxial plasma guns, during the pre-ionization phase of field-reversed configuration (FRC) formation how to catalyze the bulk ionization of a neutral gas prefill in the presence of a strong axial magnetic field and change the character of outward flux flow during field-reversal from a convective process to a much slower resistive diffusion process. Our approach has been found to significantly improve FRC formation in a conical θ-pinch, resulting in a ~350% increase in trapped flux at typical operating conditions, an expansion of accessible formation parameter space to lower densitiesmore » and higher temperatures, and a reduction or elimination of several deleterious effects associated with the pre-ionization phase.« less

Plasma-gun-assisted field-reversed configuration formation in a conical θ-pinch

DOE Office of Scientific and Technical Information (OSTI.GOV)

Weber, T. E., E-mail: tweber@lanl.gov; Intrator, T. P.; Smith, R. J.

2015-04-15

Injection of plasma via an annular array of coaxial plasma guns during the pre-ionization phase of field-reversed configuration (FRC) formation is shown to catalyze the bulk ionization of a neutral gas prefill in the presence of a strong axial magnetic field and change the character of outward flux flow during field-reversal from a convective process to a much slower resistive diffusion process. This approach has been found to significantly improve FRC formation in a conical θ-pinch, resulting in a ∼350% increase in trapped flux at typical operating conditions, an expansion of accessible formation parameter space to lower densities and highermore » temperatures, and a reduction or elimination of several deleterious effects associated with the pre-ionization phase.« less

Field Geology for Environment Awareness

NASA Astrophysics Data System (ADS)

Andrez, Marilia

2017-04-01

The objective of this project is to show the scientific and educational potential of natural environment of Lisbon region through increase of excitement for plate tectonics subjects to high school students. It is expected the students be able to understand the main concepts of the plate tectonics, stratigraphy, paleontology and paleoenvironmental interpretations, explain in the field nearby Lisbon. The richness of Guincho beach geodiversity and "Sintra Syenite Complex" valuate the geological patrimony. Combining these entities and educational purposes will raise awareness to sustainable attitudes favoring the preservation of natural patrimony by the students. The subjects approached in the project are based on the inspection of several outcrops related to the evolution of the Iberian Plate at early Mesozoic period, at several places of geological interest. The landscape of Guincho is dominated by Mesozoic formations that show good conditions paleoenvironmental and geodynamic interpretations associated to the opening of the North Atlantic. Moreover it reveals the environment linked to the magmatic intrusion of the "Sintra Alcaline Complex" at the end of Cretaceous. It is believed the contact with field is crucial to the awareness of young people to subjects that are not daily matters, however important when presented in the light of an urgent society problem such as environment preservation, at all levels by all people.

Metazen – metadata capture for metagenomes

DOE PAGES

Bischof, Jared; Harrison, Travis; Paczian, Tobias; ...

2014-12-08

Background: As the impact and prevalence of large-scale metagenomic surveys grow, so does the acute need for more complete and standards compliant metadata. Metadata (data describing data) provides an essential complement to experimental data, helping to answer questions about its source, mode of collection, and reliability. Metadata collection and interpretation have become vital to the genomics and metagenomics communities, but considerable challenges remain, including exchange, curation, and distribution. Currently, tools are available for capturing basic field metadata during sampling, and for storing, updating and viewing it. These tools are not specifically designed for metagenomic surveys; in particular, they lack themore » appropriate metadata collection templates, a centralized storage repository, and a unique ID linking system that can be used to easily port complete and compatible metagenomic metadata into widely used assembly and sequence analysis tools. Results: Metazen was developed as a comprehensive framework designed to enable metadata capture for metagenomic sequencing projects. Specifically, Metazen provides a rapid, easy-to-use portal to encourage early deposition of project and sample metadata. Conclusion: Metazen is an interactive tool that aids users in recording their metadata in a complete and valid format. A defined set of mandatory fields captures vital information, while the option to add fields provides flexibility.« less

Metazen – metadata capture for metagenomes

DOE Office of Scientific and Technical Information (OSTI.GOV)

Bischof, Jared; Harrison, Travis; Paczian, Tobias

Background: As the impact and prevalence of large-scale metagenomic surveys grow, so does the acute need for more complete and standards compliant metadata. Metadata (data describing data) provides an essential complement to experimental data, helping to answer questions about its source, mode of collection, and reliability. Metadata collection and interpretation have become vital to the genomics and metagenomics communities, but considerable challenges remain, including exchange, curation, and distribution. Currently, tools are available for capturing basic field metadata during sampling, and for storing, updating and viewing it. These tools are not specifically designed for metagenomic surveys; in particular, they lack themore » appropriate metadata collection templates, a centralized storage repository, and a unique ID linking system that can be used to easily port complete and compatible metagenomic metadata into widely used assembly and sequence analysis tools. Results: Metazen was developed as a comprehensive framework designed to enable metadata capture for metagenomic sequencing projects. Specifically, Metazen provides a rapid, easy-to-use portal to encourage early deposition of project and sample metadata. Conclusion: Metazen is an interactive tool that aids users in recording their metadata in a complete and valid format. A defined set of mandatory fields captures vital information, while the option to add fields provides flexibility.« less

Ecological regulation of black leaf streak disease driven by plant richness in banana agroecosystems.

PubMed

Poeydebat, Charlotte; Carval, Dominique; Tixier, Philippe; Daribo, Marie-Odette; De Lapeyre De Bellaire, Luc

2018-05-04

Black leaf streak disease (BLSD), caused by the fungus Mycosphaerella fijiensis, is an important threat to banana production. Although its control relies on costly and unsustainable use of fungicides, ecological regulation of BLSD linked to field-scale plant diversity has received little attention. We monitored banana phytometers in plots in banana-based fields where no fungicides were applied. Within each plot, we measured plant richness in three strata, canopy openness, necrotic leaf removal, Musa abundance and richness. We quantified ecological regulation of five BLSD parameters (inoculum sources, spore abundance, lesion density, incubation time, and the area under the disease progression curve) and identified, using structural equation modeling, the characteristics of the plant community and the mechanisms likely responsible for the regulation. Regulation occurred, but most effectively before lesion formation, and was mainly related to plant richness between 1.5 and 5m high. A barrier effect, rather than a dilution effect, more likely limited spore abundance. Our results support the hypothesis that the potential effects of plant richness on leaf-scale microclimate variability and on the diversity of epiphyllic microorganisms are involved in the regulation of incubation time and lesion density. Field-scale management of plant diversity may be a promising lever to foster ecological regulation of BLSD.

Bioclastic turbiditic reservoirs: San Giorgio, Santa Maria Mare, Sarago Mare fields (Italy)

DOE Office of Scientific and Technical Information (OSTI.GOV)

Heritier, F.E.; Soudet, H.; Richert, J.

1987-05-01

These three fields and the associated Mormora discovery are located along the coastline of the central Adriatic Sea or on the very proximate shelf south of Ancona. Geologically they belong to the Marches basin. These fields are situated on highly faulted northwest-trending anticlines which are related to a north-south shear zone under the disharmonic cover of late Miocene and early Pliocene shales. Oil and gas are contained in the Scaglia limestone formation of Late Cretaceous to Paleocene age whose reservoirs consist of high-energy bioclastic grainstones interbedded in open marine chalk deposits, and spread and deposited by turbiditic currents. The diagenesismore » of these bioclastic grainstones is closely related to the thickness and composition of the different beds and is chiefly located at the top and bottom of them. It is also related to the fluid content of the reservoir. Fracturing of these beds under the tectonic stresses is linked to the reservoir's characteristics and to the extension of consolidated facies by diagenesis. This fracturing is responsible for the production behavior of the different wells. Source rocks are the evaporitic shales of upper Miocene age, mature in the deeper part of the Marches basin under the upper Pliocene olistostromes.« less

Positron Annihilation Ratio Spectroscopy (PsARS) Applied to Positronium Formation Studies

DTIC Science & Technology

2010-03-01

POSITRON ANNIHILATION RATIO SPECTROSCOPY (PsARS) APPLIED TO POSITRONIUM FORMATION STUDIES THESIS...AFIT/GNE/ENP/10-M07 POSITRON ANNIHILATION RATIO SPECTROSCOPY (PsARS) APPLIED TO POSITRONIUM FORMATION STUDIES ...lifetime studies in local electric field experiments. High local electric fields can polarize a positron -electron pair, which may result in an extended

Calculation of the Relative Chemical Stabilities of Proteins as a Function of Temperature and Redox Chemistry in a Hot Spring

PubMed Central

Dick, Jeffrey M.; Shock, Everett L.

2011-01-01

Uncovering the chemical and physical links between natural environments and microbial communities is becoming increasingly amenable owing to geochemical observations and metagenomic sequencing. At the hot spring known as Bison Pool in Yellowstone National Park, the cooling of the water in the outflow channel is associated with an increase in oxidation potential estimated from multiple field-based measurements. Representative groups of proteins whose sequences were derived from metagenomic data also exhibit an increase in average oxidation state of carbon in the protein molecules with distance from the hot-spring source. The energetic requirements of reactions to form selected proteins used in the model were computed using amino-acid group additivity for the standard molal thermodynamic properties of the proteins, and the relative chemical stabilities of the proteins were investigated by varying temperature, pH and oxidation state, expressed as activity of dissolved hydrogen. The relative stabilities of the proteins were found to track the locations of the sampling sites when the calculations included a function for hydrogen activity that increases with temperature and is higher, or more reducing, than values consistent with measurements of dissolved oxygen, sulfide and oxidation-reduction potential in the field. These findings imply that spatial patterns in the amino acid compositions of proteins can be linked, through energetics of overall chemical reactions representing the formation of the proteins, to the environmental conditions at this hot spring, even if microbial cells maintain considerably different internal conditions. Further applications of the thermodynamic calculations are possible for other natural microbial ecosystems. PMID:21853048

Modelling Internal Heterogeneities in Debris-Covered Glaciers: the Potential to Link Morphology and Climate

NASA Astrophysics Data System (ADS)

Stuurman, C. M.; Holt, J.; Levy, J.

2016-12-01

On Earth and Mars, debris-covered glaciers (DCGs) often exhibit arcuate ridges transverse to the flow direction. Additionally, there exists some evidence linking internal structure (which is controlled in part by climate) in DCGs with surface microtopography. A better understanding of the relationship between englacial debris bands, compressional stresses, and debris-covered glacier microtopography will augment understanding of formational environments and mechanisms for terrestrial and martian DCGs. In order to better understand relationships between DCG surface morphology and internal debris bands, we combine field observations with finite-element modeling techniques to relate internal structure of DCGs to their surface morphologies. A geophysical survey including time-domain electromagnetic and ground-penetrating radar techniques of the Galena Creek Rock Glacier, WY was conducted over two field seasons in 2015/2016. Geomorphic analysis by surface observation and photogrammetry, including examination of a cirque-based thermokarst, was used to guide and complement geophysical sounding methods. Very clean ice below a 1 m thick layer of debris was directly observed on the walls of a 40 m diameter thermokarst pond near the accumulation zone. An englacial debris band 0.7 m thick dipping 30o intersected the wall of the pond. Transverse ridges occur at varying ridge-to-ridge wavelengths at different locations on the glacier. The GPR data supports the idea that surface ridges correlate with the intersection of debris layers and the surface. Modelling evidence is consistent with the observation of ridges at debris-layer/surface intersections, with compressional stresses buckling ice up-stream of the debris band.

Galaxy evolution in protoclusters

NASA Astrophysics Data System (ADS)

Muldrew, Stuart I.; Hatch, Nina A.; Cooke, Elizabeth A.

2018-01-01

We investigate galaxy evolution in protoclusters using a semi-analytic model applied to the Millennium Simulation, scaled to a Planck cosmology. We show that the model reproduces the observed behaviour of the star formation history (SFH) both in protoclusters and the field. The rate of star formation peaks ∼0.7 Gyr earlier in protoclusters than in the field and declines more rapidly afterwards. This results in protocluster galaxies forming significantly earlier: 80 per cent of their stellar mass is already formed by z = 1.4, but only 45 per cent of the field stellar mass has formed by this time. The model predicts that field and protocluster galaxies have similar average specific star-formation rates (sSFR) at z > 3, and we find evidence of an enhancement of star formation in the dense protoclusters at early times. At z < 3, protoclusters have lower sSFRs, resulting in the disparity between the SFHs. We show that the stellar mass functions of protoclusters are top-heavy compared with the field due to the early formation of massive galaxies, and the disruption and merging of low-mass satellite galaxies in the main haloes. The fundamental cause of the different SFHs and mass functions is that dark matter haloes are biased tracers of the dark matter density field: the high density of haloes and the top-heavy halo mass function in protoclusters result in the early formation then rapid merging and quenching of galaxies. We compare our results with observations from the literature and highlight which observables provide the most informative tests of galaxy formation.

Exploring the Role of Overlying Fields and Flare Ribbons in CME Speeds

NASA Astrophysics Data System (ADS)

Deng, M.; Welsch, B. T.

2013-12-01

The standard model of eruptive, two-ribbon flares involves reconnection of overlying magnetic fields beneath a rising ejection. Numerous observers have reported evidence linking this reconnection, indicated by photospheric flux swept out by flare ribbons, to coronal mass ejection (CME) acceleration. This acceleration might be caused by reconnected fields that wrap around the ejection producing an increased outward "hoop force." Other observations have linked stronger overlying fields, measured by the power-law index of the fitted decay rate of field strengths overlying eruption sites, to slower CME speeds. This might be caused by greater downward magnetic tension in stronger overlying fields. So overlying fields might both help and hinder the acceleration of CMEs: reconnection that converts overlying fields into flux winding about the ejection might help, but unreconnected overlying fields might hurt. Here, we investigate the roles of both ribbon fluxes and the decay rates of overlying fields in a set of eruptive events.

Wire like link for cycle reproducible and cycle accurate hardware accelerator

DOEpatents

Asaad, Sameh; Kapur, Mohit; Parker, Benjamin D

2015-04-07

First and second field programmable gate arrays are provided which implement first and second blocks of a circuit design to be simulated. The field programmable gate arrays are operated at a first clock frequency and a wire like link is provided to send a plurality of signals between them. The wire like link includes a serializer, on the first field programmable gate array, to serialize the plurality of signals; a deserializer on the second field programmable gate array, to deserialize the plurality of signals; and a connection between the serializer and the deserializer. The serializer and the deserializer are operated at a second clock frequency, greater than the first clock frequency, and the second clock frequency is selected such that latency of transmission and reception of the plurality of signals is less than the period corresponding to the first clock frequency.

Non-potential Field Formation in the X-shaped Quadrupole Magnetic Field Configuration

DOE Office of Scientific and Technical Information (OSTI.GOV)

Kawabata, Y.; Shimizu, T.; Inoue, S., E-mail: kawabata.yusuke@ac.jaxa.jp

Some types of solar flares are observed in X-shaped quadrupolar field configuration. To understand the magnetic energy storage in such a region, we studied non-potential field formation in an X-shaped quadrupolar field region formed in the active region NOAA 11967, which produced three X-shaped M-class flares on 2014 February 2. Nonlinear force-free field modeling was applied to a time series of vector magnetic field maps from the Solar Optical Telescope on board Hinode and the Helioseismic and Magnetic Imager on board the Solar Dynamics Observatory . Our analysis of the temporal three-dimensional magnetic field evolution shows that the sufficient freemore » energy had already been stored more than 10 hr before the occurrence of the first M-class flare and that the storage was observed in a localized region. In this localized region, quasi-separatrix layers (QSLs) started to develop gradually from 9 hr before the first M-class flare. One of the flare ribbons that appeared in the first M-class flare was co-spatial with the location of the QSLs, suggesting that the formation of the QSLs is important in the process of energy release. These QSLs do not appear in the potential field calculation, indicating that they were created by the non-potential field. The formation of the QSLs was associated with the transverse photospheric motion of the pre-emerged flux and the emergence of a new flux. This observation indicates that the occurrence of the flares requires the formation of QSLs in the non-potential field in which free magnetic energy is stored in advance.« less

Role of microbial processes in linking sandstone diagenesis with organic-rich clays

USGS Publications Warehouse

McMahon, P.B.; Chapelle, F.H.; Falls, W.F.; Bradley, P.M.

1992-01-01

Shows that the processes of microbial organic-acid production (via fermentation) in clays and microbial organic-acid consumption (via sulfate reduction) in sands effectively link organic-rich clays to sandstone diagenesis in the Black Creek Formation of South Carolina. Diagenetic processes have resulted in the formation of 10 volume percent calcite cement, 0.1 volume percent authigenic pyrite, and 1.5 volume percent secondary porosity in Black Creek sands. However, the distribution of these diagenetic processes is not uniform, resulting in net destruction of porosity in some parts of the sand and net porosity enchancement in other parts. -from Authors

Glycation Reactions of Casein Micelles.

PubMed

Moeckel, Ulrike; Duerasch, Anja; Weiz, Alexander; Ruck, Michael; Henle, Thomas

2016-04-13

After suspensions of micellar casein or nonmicellar sodium caseinate had been heated, respectively, in the presence and absence of glucose for 0-4 h at 100 °C, glycation compounds were quantitated. The formation of Amadori products as indicators for the "early" Maillard reaction were in the same range for both micellar and nonmicellar caseins, indicating that reactive amino acid side chains within the micelles are accessible for glucose in a comparable way as in nonmicellar casein. Significant differences, however, were observed concerning the formation of the advanced glycation end products (AGEs), namely, N(ε)-carboxymethyllysine (CML), pyrraline, pentosidine, and glyoxal-lysine dimer (GOLD). CML could be observerd in higher amounts in nonmicellar casein, whereas in the micelles the pyrraline formation was increased. Pentosidine and GOLD were formed in comparable amounts. Furthermore, the extent of protein cross-linking was significantly higher in the glycated casein micelles than in the nonmicellar casein samples. Dynamic light scattering and scanning electron microscopy showed that glycation has no influence on the size of the casein micelles, indicating that cross-linking occurs only in the interior of the micelles, but altered the surface morphology. Studies on glycation and nonenzymatic cross-linking can contribute to the understanding of the structure of casein micelles.

Absence of cross-resistance between two alkylating agents: BCNU vs bifunctional galactitol.

PubMed

Institóris, E; Szikla, K; Otvös, L; Gál, F

1989-01-01

Dianhydrogalactitol (DAG) increased the life span of both BCNU-sensitive and -resistant L1210 tumor-bearing mice. However, the BCNU-resistant strain showed slightly lower sensitivity against DAG, which could be overcome by an increase in drug dose of ca. 20%. The somewhat lower sensitivity was proportional to a slightly reduced DNA cross-linking formation induced by DAG in BCNU-resistant cells. The amount of DNA cross-links was determined by measurement of the 1,6-di(guaninyl)-galactitol content of DNA. The slight reduction in cross-links is not attributable to DNA repair but rather to other factors that seem to prevent the formation of DNA-drug adducts. The absence of cross-resistance is explained by different kinds of DNA damage caused by the two alkylating agents and the presumably different defense mechanisms developed by cells against these lesions.

Erv1p from Saccharomyces cerevisiae is a FAD-linked sulfhydryl oxidase.

PubMed

Lee, J; Hofhaus, G; Lisowsky, T

2000-07-14

The yeast ERV1 gene encodes a small polypeptide of 189 amino acids that is essential for mitochondrial function and for the viability of the cell. In this study we report the enzymatic activity of this protein as a flavin-linked sulfhydryl oxidase catalyzing the formation of disulfide bridges. Deletion of the amino-terminal part of Erv1p shows that the enzyme activity is located in the 15 kDa carboxy-terminal domain of the protein. This fragment of Erv1p still binds FAD and catalyzes the formation of disulfide bonds but is no longer able to form dimers like the complete protein. The carboxy-terminal fragment contains a conserved CXXC motif that is present in all homologous proteins from yeast to human. Thus Erv1p represents the first FAD-linked sulfhydryl oxidase from yeast and the first of these enzymes that is involved in mitochondrial biogenesis.

Multistep divergent synthesis of benzimidazole linked benzoxazole/benzothiazole via copper catalyzed domino annulation.

PubMed

Liao, Jen-Yu; Selvaraju, Manikandan; Chen, Chih-Hau; Sun, Chung-Ming

2013-04-21

An efficient, facile synthesis of structurally diverse benzimidazole integrated benzoxazole and benzothiazoles has been developed. In a multi-step synthetic sequence, 4-fluoro-3-nitrobenzoic acid was converted into benzimidazole bis-heterocycles, via the intermediacy of benzimidazole linked ortho-chloro amines. The amphiphilic reactivity of this intermediate was designed to achieve the title compounds by the reaction of various acid chlorides and isothiocyanates in a single step through the in situ formation of ortho-chloro anilides and thioureas under microwave irradiation. A versatile one pot domino annulation reaction was developed to involve the reaction of benzimidazole linked ortho-chloro amines with acid chlorides and isothiocyanates. The initial acylation and urea formation followed by copper catalyzed intramolecular C-O and C-S cross coupling reactions furnished the angularly oriented bis-heterocycles which bear a close resemblance to the streptomyces antibiotic UK-1.

Effect of Rubber Polarity on Cluster Formation in Rubbers Cross-Linked with Diels–Alder Chemistry

PubMed Central

2017-01-01

Diels–Alder chemistry has been used for the thermoreversible cross-linking of furan-functionalized ethylene/propylene (EPM) and ethylene/vinyl acetate (EVM) rubbers. Both furan-functionalized elastomers were successfully cross-linked with bismaleimide to yield products with a similar cross-link density. NMR relaxometry and SAXS measurements both show that the apolar EPM-g-furan precursor contains phase-separated polar clusters and that cross-linking with polar bismaleimide occurs in these clusters. The heterogeneously cross-linked network of EPM-g-furan contrasts with the homogeneous network in the polar EVM-g-furan. The heterogeneous character of the cross-links in EPM-g-furan results in a relatively high Young’s modulus, whereas the more uniform cross-linking in EVM-g-furan results in a higher tensile strength and elongation at break. PMID:29213149

Brady's Geothermal Field - March 2016 Vibroseis SEG-Y Files and UTM Locations

DOE Data Explorer

Kurt Feigl

2016-03-31

PoroTomo March 2016 (Task 6.4) Updated vibroseis source locations with UTM locations. Supersedes gdr.openei.org/submissions/824. Updated vibroseis source location data for Stages 1-4, PoroTomo March 2016. This revision includes source point locations in UTM format (meters) for all four Stages of active source acquisition. Vibroseis sweep data were collected on a Signature Recorder unit (mfr Seismic Source) mounted in the vibroseis cab during the March 2016 PoroTomo active seismic survey Stages 1 to 4. Each sweep generated a GPS timed SEG-Y file with 4 input channels and a 20 second record length. Ch1 = pilot sweep, Ch2 = accelerometer output from the vibe's mass, Ch3 = accel output from the baseplase, and Ch4 = weighted sum of the accelerometer outputs. SEG-Y files are available via the links below.

BacDive--The Bacterial Diversity Metadatabase in 2016.

PubMed

Söhngen, Carola; Podstawka, Adam; Bunk, Boyke; Gleim, Dorothea; Vetcininova, Anna; Reimer, Lorenz Christian; Ebeling, Christian; Pendarovski, Cezar; Overmann, Jörg

2016-01-04

BacDive-the Bacterial Diversity Metadatabase (http://bacdive.dsmz.de) provides strain-linked information about bacterial and archaeal biodiversity. The range of data encompasses taxonomy, morphology, physiology, sampling and concomitant environmental conditions as well as molecular biology. The majority of data is manually annotated and curated. Currently (with release 9/2015), BacDive covers 53 978 strains. Newly implemented RESTful web services provide instant access to the content in machine-readable XML and JSON format. Besides an overall increase of data content, BacDive offers new data fields and features, e.g. the search for gene names, plasmids or 16S rRNA in the advanced search, as well as improved linkage of entries to external life science web resources. © The Author(s) 2015. Published by Oxford University Press on behalf of Nucleic Acids Research.

Digital TV tri-state delta modulation system for Space Shuttle ku-band downlink

NASA Technical Reports Server (NTRS)

Udalov, S.; Huth, G. K.; Roberts, D.; Batson, B. H.

1982-01-01

A tri-state delta modulation/demodulation (TSDM) technique which provides for efficient run-length coding of constant-intensity segments of a TV picture is described. Aspects of the hardware implementation of a high-speed TSDM transmitter and receiver for black-and-white TV or field-sequential color or NTSC format color are reviewed. Run-length encoding of the TSDM output can consistently reduce the required channel data rate well below one bit per sample. As compared with a bistate delta modulation system, the present technique eliminates granularity in the reconstructed video without degrading rise or fall times. About 40 chips are used by TSDM when used to handle the luminance information in a color link. A possible overall space and ground functional configuration to accommodate Shuttle digital TV with scrambling for privacy is presented.

Gold-film coating assisted femtosecond laser fabrication of large-area, uniform periodic surface structures.

PubMed

Feng, Pin; Jiang, Lan; Li, Xin; Rong, Wenlong; Zhang, Kaihu; Cao, Qiang

2015-02-20

A simple, repeatable approach is proposed to fabricate large-area, uniform periodic surface structures by a femtosecond laser. 20 nm gold films are coated on semiconductor surfaces on which large-area, uniform structures are fabricated. In the case study of silicon, cross-links and broken structures of laser induced periodic surface structures (LIPSSs) are significantly reduced on Au-coated silicon. The good consistency between the scanning lines facilitates the formation of large-area, uniform LIPSSs. The diffusion of hot electrons in the Au films increases the interfacial carrier densities, which significantly enhances interfacial electron-phonon coupling. High and uniform electron density suppresses the influence of defects on the silicon and further makes the coupling field more uniform and thus reduces the impact of laser energy fluctuations, which homogenizes and stabilizes large-area LIPSSs.

Linked Ocean Data

NASA Astrophysics Data System (ADS)

Leadbetter, Adam; Arko, Robert; Chandler, Cynthia; Shepherd, Adam

2014-05-01

"Linked Data" is a term used in Computer Science to encapsulate a methodology for publishing data and metadata in a structured format so that links may be created and exploited between objects. Berners-Lee (2006) outlines the following four design principles of a Linked Data system: Use Uniform Resource Identifiers (URIs) as names for things. Use HyperText Transfer Protocol (HTTP) URIs so that people can look up those names. When someone looks up a URI, provide useful information, using the standards (Resource Description Framework [RDF] and the RDF query language [SPARQL]). Include links to other URIs so that they can discover more things. In 2010, Berners-Lee revisited his original design plan for Linked Data to encourage data owners along a path to "good Linked Data". This revision involved the creation of a five star rating system for Linked Data outlined below. One star: Available on the web (in any format). Two stars: Available as machine-readable structured data (e.g. An Excel spreadsheet instead of an image scan of a table). Three stars: As two stars plus the use of a non-proprietary format (e.g. Comma Separated Values instead of Excel). Four stars: As three stars plus the use of open standards from the World Wide Web Commission (W3C) (i.e. RDF and SPARQL) to identify things, so that people can point to your data and metadata. Five stars: All the above plus link your data to other people's data to provide context Here we present work building on the SeaDataNet common vocabularies served by the NERC Vocabulary Server, connecting projects such as the Rolling Deck to Repository (R2R) and the Biological and Chemical Oceanography Data Management Office (BCO-DMO) and other vocabularies such as the Marine Metadata Interoperability Ontology Register and Repository and the NASA Global Change Master Directory to create a Linked Ocean Data cloud. Publishing the vocabularies and metadata in standard RDF XML and exposing SPARQL endpoints renders them five-star Linked Data repositories. The benefits of this approach include: increased interoperability between the metadata created by projects; improved data discovery as users of SeaDataNet, R2R and BCO-DMO terms can find data using labels with which they are familiar both standard tools and newly developed custom tools may be used to explore the data; and using standards means the custom tools are easier to develop Linked Data is a concept which has been in existence for nearly a decade, and has a simple set of formal best practices associated with it. Linked Data is increasingly being seen as a driver of the next generation of "community science" activities. While many data providers in the oceanographic domain may be unaware of Linked Data, they may also be providing it at one of its lower levels. Here we have shown that it is possible to deliver the highest standard of Linked Oceanographic Data, and some of the benefits of the approach.

Leader-Follower Formation Control of UUVs with Model Uncertainties, Current Disturbances, and Unstable Communication

PubMed Central

Yan, Zheping; Xu, Da; Chen, Tao; Zhang, Wei; Liu, Yibo

2018-01-01

Unmanned underwater vehicles (UUVs) have rapidly developed as mobile sensor networks recently in the investigation, survey, and exploration of the underwater environment. The goal of this paper is to develop a practical and efficient formation control method to improve work efficiency of multi-UUV sensor networks. Distributed leader-follower formation controllers are designed based on a state feedback and consensus algorithm. Considering that each vehicle is subject to model uncertainties and current disturbances, a second-order integral UUV model with a nonlinear function is established using the state feedback linearized method under current disturbances. For unstable communication among UUVs, communication failure and acoustic link noise interference are considered. Two-layer random switching communication topologies are proposed to solve the problem of communication failure. For acoustic link noise interference, accurate representation of valid communication information and noise stripping when designing controllers is necessary. Effective communication topology weights are designed to represent the validity of communication information interfered by noise. Utilizing state feedback and noise stripping, sufficient conditions for design formation controllers are proposed to ensure UUV formation achieves consensus under model uncertainties, current disturbances, and unstable communication. The stability of formation controllers is proven by the Lyapunov-Razumikhin theorem, and the validity is verified by simulation results. PMID:29473919

Parents' Marital Distress, Divorce, and Remarriage: Links with Daughters' Early Family Formation Transitions

ERIC Educational Resources Information Center

Amato, Paul R.; Kane, Jennifer B.

2011-01-01

The authors used data from the Add Health study to estimate the effects of parents' marital status and relationship distress on daughters' early family formation transitions. Outcomes included traditional transitions (marriage and marital births) and nontraditional transitions (cohabitation and nonmarital births). Relationship distress among…

Viewing Files — EDRN Public Portal

Cancer.gov

In addition to standard HTML Web pages, our web site contain other file formats. You may need additional software or browser plug-ins to view some of the information available on our site. This document lists show each format, along with links to the corresponding freely available plug-ins or viewers.

Viewing Files | Smokefree 60+

Cancer.gov

In addition to standard HTML webpages, our website contains files in other formats. You may need additional software or browser plug-ins to view some of these files. The following list shows each format along with links to the corresponding freely available plug-ins or viewers. Documents  Adobe Acrobat Reader (.pdf)

Highly broad-specific and sensitive enzyme-linked immunosorbent assay for screening sulfonamides: Assay optimization and application to milk samples

USDA-ARS?s Scientific Manuscript database

A broad-specific and sensitive immunoassay for the detection of sulfonamides was developed by optimizing the conditions of an enzyme-linked immunosorbent assay (ELISA) in regard to different monoclonal antibodies (MAbs), assay format, immunoreagents, and several physicochemical factors (pH, salt, de...

Barium-cross-linked alginate-gelatine microcapsule as a potential platform for stem cell production and modular tissue formation.

PubMed

Alizadeh Sardroud, Hamed; Nemati, Sorour; Baradar Khoshfetrat, Ali; Nabavinia, Mahbobeh; Beygi Khosrowshahi, Younes

2017-08-01

Influence of gelatine concentration and cross-linker ions of Ca 2+ and Ba 2+ was evaluated on characteristics of alginate hydrogels and proliferation behaviours of model adherent and suspendable stem cells of fibroblast and U937 embedded in alginate microcapsules. Increasing gelatine concentration to 2.5% increased extent of swelling to 15% and 25% for barium- and calcium-cross-linked hydrogels, respectively. Mechanical properties also decreased with increasing swelling of hydrogels. Both by increasing gelatine concentration and using barium ions increased considerably the proliferation of encapsulated model stem cells. Barium-cross-linked alginate-gelatine microcapsule tested for bone building block showed a 13.5 ± 1.5-fold expansion for osteoblast cells after 21 days with deposition of bone matrix. The haematopoietic stem cells cultured in the microcapsule after 7 days also showed up to 2-fold increase without adding any growth factor. The study demonstrates that barium-cross-linked alginate-gelatine microcapsule has potential for use as a simple and efficient 3D platform for stem cell production and modular tissue formation.

An arabinogalactan from flowers of Panax notoginseng inhibits angiogenesis by BMP2/Smad/Id1 signaling.

PubMed

Wang, Peipei; Zhang, Lei; Yao, Jian; Shi, Yikang; Li, Ping; Ding, Kan

2015-05-05

Angiogenesis plays an essential role in tumor development. Blocking angiogenesis in tumor has become a promising tactic in limiting cancer progression. Here, an arabinogalactan polysaccharide, RN1 was isolated from flowers of Panax notoginseng. Its structure was determined to possess a backbone of 1,6-linked Galp branched at C3 by side 1,3-linked Galp, with branches attached at position O-3 of it. The branches mainly contained 1,5-linked, 1,3,5-linked, terminal Arabinose and terminal Galactose. RN1 could inhibit microvessel formation in the BxPC-3 pancreatic cancer cell xenograft tumor in nude mice. The antiangiogenesis assay showed that RN1 could reduce the migratory activity of endothelial cells and their ability of tube formation on matrigel, but no effect on endothelial cells growth. Further studies revealed that RN1 could inhibit BMP2/Smad1/5/8/Id1 signaling. All those data indicated the RN1 had an antiangiogenic effect via BMP2 signaling and could be a potential novel inhibitor of angiogenesis. Copyright © 2014 Elsevier Ltd. All rights reserved.

Field Test on the Feasibility of Remoting HF Antenna with Fiber Optics

DTIC Science & Technology

2008-07-31

Naval Research Laboratory Washington, DC 20375-5320 NRL/MR/5652--08-9137 Field Test on the Feasibility of Remoting HF Antenna with Fiber Optics July...NUMBER (include area code) b. ABSTRACT c. THIS PAGE 18. NUMBER OF PAGES 17. LIMITATION OF ABSTRACT Field Test on the Feasibility of Remoting HF Antenna...optic link was employed to remote a high-frequency ( HF , 2-30 MHz) direction-finding (DF) array. The test link comprised a seven-element “L” array

The Non-catalytic B Subunit of Coagulation Factor XIII Accelerates Fibrin Cross-linking*

PubMed Central

Souri, Masayoshi; Osaki, Tsukasa; Ichinose, Akitada

2015-01-01

Covalent cross-linking of fibrin chains is required for stable blood clot formation, which is catalyzed by coagulation factor XIII (FXIII), a proenzyme of plasma transglutaminase consisting of catalytic A (FXIII-A) and non-catalytic B subunits (FXIII-B). Herein, we demonstrate that FXIII-B accelerates fibrin cross-linking. Depletion of FXIII-B from normal plasma supplemented with a physiological level of recombinant FXIII-A resulted in delayed fibrin cross-linking, reduced incorporation of FXIII-A into fibrin clots, and impaired activation peptide cleavage by thrombin; the addition of recombinant FXIII-B restored normal fibrin cross-linking, FXIII-A incorporation into fibrin clots, and activation peptide cleavage by thrombin. Immunoprecipitation with an anti-fibrinogen antibody revealed an interaction between the FXIII heterotetramer and fibrinogen mediated by FXIII-B and not FXIII-A. FXIII-B probably binds the γ-chain of fibrinogen with its D-domain, which is near the fibrin polymerization pockets, and dissociates from fibrin during or after cross-linking between γ-chains. Thus, FXIII-B plays important roles in the formation of a ternary complex between proenzyme FXIII, prosubstrate fibrinogen, and activator thrombin. Accordingly, congenital or acquired FXIII-B deficiency may result in increased bleeding tendency through impaired fibrin stabilization due to decreased FXIII-A activation by thrombin and secondary FXIII-A deficiency arising from enhanced circulatory clearance. PMID:25809477

Investigation of different cross-linking approaches on 3D gelatin scaffolds for tissue engineering application: A comparative analysis.

PubMed

Shankar, K Gopal; Gostynska, Natalia; Montesi, Monica; Panseri, Silvia; Sprio, Simone; Kon, Elizaveta; Marcacci, Maurilio; Tampieri, Anna; Sandri, Monica

2017-02-01

The present study aims to investigate the physical-chemical and biological features exhibited by porous scaffolds for regeneration of cartilaginous tissues obtained through stabilization of 3D gelatin hydrogels by physical (DHT), chemical (BDDGE) and natural (Genipin) cross-linking approaches. The study aimed at comparatively assessing the porous microstructure and the long-term resistance of the scaffolds upon degradation in wet physiological conditions (37°C, pH=7.4). The degree of cross-linking increases as function of incorporation of cross-linkers which was maximum up to 73% for BDDGE. The infrared spectroscopy and thermal analysis confirmed the gelatin structure was preserved during the cross-linking treatments. Mechanical properties of the scaffolds were analysed by static and dynamic compression test, which showed different viscoelastic behaviour upon various cross-linking strategies. The biological performance of the scaffolds investigated using human chondrocytes showed good cell adhesion, viability and proliferation, as well as extensive 3D scaffold colonization. Besides, the analysis of gene expression related to the formation of new chondral tissue reported increasing ability with time in the formation of new extra-cellular matrix. In conclusion, out of three different cross-linking methods, the gelatin scaffolds subjected to dehydrothermal treatment (DHT) represented to be the most favourable 3D scaffold for cartilage regeneration. Copyright © 2016 Elsevier B.V. All rights reserved.

Visualization of the evolution of charged droplet formation and jet transition in electrostatic atomization

DOE Office of Scientific and Technical Information (OSTI.GOV)

Huo, Yuanping, E-mail: huoyuanping@gmail.com; Wang, Junfeng, E-mail: wangjunfeng@ujs.edu.cn; Zuo, Ziwen

2015-11-15

A detailed experimental study on the evolution of charged droplet formation and jet transition from a capillary is reported. By means of high-speed microscopy, special attention has been paid to the dynamics of the liquid thread and satellite droplets in the dripping mode, and a method for calculating the surface charge on the satellite droplet is proposed. Jet transition behavior based on the electric Bond number has been visualized, droplet sizes and velocities are measured to obtain the ejection characteristic of the spray plume, and the charge and hydrodynamic relaxation are linked to give explanations for ejection dynamics with differentmore » properties. The results show that the relative length is very sensitive to the hydrodynamic relaxation time. The magnitude of the electric field strength dominates the behavior of coalescence and noncoalescence, with the charge relationship between the satellite droplet and the main droplet being clear for every noncoalescence movement. Ejection mode transitions mainly depend on the magnitude of the electric Bond number, and the meniscus dynamics is determined by the ratio of the charge relaxation time to the hydrodynamic relaxation time.« less

Guidelines for the selection of chemical protective clothing. 1991 Update: Performance, availability, and sources of chemical protective clothing

DOE Office of Scientific and Technical Information (OSTI.GOV)

Johnson, J.S.; Schwope, A.D.; Goydan, R.

1991-12-31

The selection, acquisition, and use of chemical protective clothing (CPC) at Department of Energy (DOE) facilities require up-to-date data and information on the performance, availability, and sources of such clothing. There are hundreds of types and more than one hundred principal manufacturers of CPC. Information on CPC is published in manufacturers` brochures and the technical literature. These information sources, however, have no standard format or terminology for describing products or the results of product testing. Furthermore, the literature and information is continually changing and growing. Consequently, DOE`s industrial hygienists and safety specialists are frequently confounded in their efforts to providemore » effective CPC to workers, by they in the field, the laboratory, or the plant. In recognition of the many advances and changes that have occurred and of the need to provide current information to its health and safety staff, the DOE has updated and modified the key appendices of the Guidelines/Chemical Protective Clothing. The updates appendices compose the majority of this update document, wherein they are called Sections. Each Section begins with a description of its format, content, abbreviations, units, and links with other Sections, as appropriate.« less

In-vivo characterization of 2D residence time maps in the left ventricle

NASA Astrophysics Data System (ADS)

Rossini, Lorenzo; Martinez-Legazpi, Pablo; Bermejo, Javier; Benito, Yolanda; Alhama, Marta; Yotti, Raquel; Perez Del Villar, Candelas; Gonzalez-Mansilla, Ana; Barrio, Alicia; Fernandez-Aviles, Francisco; Shadden, Shawn; Del Alamo, Juan Carlos

2014-11-01

Thrombus formation is a multifactorial process involving biology and hemodynamics. Blood stagnation and wall shear stress are linked to thrombus formation. The quantification of residence time of blood in the left ventricle (LV) is relevant for patients affected by ventricular contractility dysfunction. We use a continuum formulation to compute 2D blood residence time (TR) maps in the LV using in-vivo 2D velocity fields in the apical long axis plane obtained from Doppler-echocardiography images of healthy and dilated hearts. The TR maps are generated integrating in time an advection-diffusion equation of a passive scalar with a time-source term. This equation represents the Eulerian translation of DTR / D t = 1 and is solved numerically with a finite volume method on a Cartesian grid using an immersed boundary for the LV wall. Changing the source term and the boundary conditions allows us to track blood transport (direct and retained flow) in the LV and the topology of early (E) and atrial (A) filling waves. This method has been validated against a Lagrangian Coherent Structures analysis, is computationally inexpensive and observer independent, making it a potential diagnostic tool in clinical settings.

Space in the brain: how the hippocampal formation supports spatial cognition

PubMed Central

Hartley, Tom; Lever, Colin; Burgess, Neil; O'Keefe, John

2014-01-01

Over the past four decades, research has revealed that cells in the hippocampal formation provide an exquisitely detailed representation of an animal's current location and heading. These findings have provided the foundations for a growing understanding of the mechanisms of spatial cognition in mammals, including humans. We describe the key properties of the major categories of spatial cells: place cells, head direction cells, grid cells and boundary cells, each of which has a characteristic firing pattern that encodes spatial parameters relating to the animal's current position and orientation. These properties also include the theta oscillation, which appears to play a functional role in the representation and processing of spatial information. Reviewing recent work, we identify some themes of current research and introduce approaches to computational modelling that have helped to bridge the different levels of description at which these mechanisms have been investigated. These range from the level of molecular biology and genetics to the behaviour and brain activity of entire organisms. We argue that the neuroscience of spatial cognition is emerging as an exceptionally integrative field which provides an ideal test-bed for theories linking neural coding, learning, memory and cognition. PMID:24366125

Master Metadata Repository and Metadata-Management System

NASA Technical Reports Server (NTRS)

Armstrong, Edward; Reed, Nate; Zhang, Wen

2007-01-01

A master metadata repository (MMR) software system manages the storage and searching of metadata pertaining to data from national and international satellite sources of the Global Ocean Data Assimilation Experiment (GODAE) High Resolution Sea Surface Temperature Pilot Project [GHRSSTPP]. These sources produce a total of hundreds of data files daily, each file classified as one of more than ten data products representing global sea-surface temperatures. The MMR is a relational database wherein the metadata are divided into granulelevel records [denoted file records (FRs)] for individual satellite files and collection-level records [denoted data set descriptions (DSDs)] that describe metadata common to all the files from a specific data product. FRs and DSDs adhere to the NASA Directory Interchange Format (DIF). The FRs and DSDs are contained in separate subdatabases linked by a common field. The MMR is configured in MySQL database software with custom Practical Extraction and Reporting Language (PERL) programs to validate and ingest the metadata records. The database contents are converted into the Federal Geographic Data Committee (FGDC) standard format by use of the Extensible Markup Language (XML). A Web interface enables users to search for availability of data from all sources.

Nanoscale imaging of fundamental li battery chemistry: solid-electrolyte interphase formation and preferential growth of lithium metal nanoclusters.

PubMed

Sacci, Robert L; Black, Jennifer M; Balke, Nina; Dudney, Nancy J; More, Karren L; Unocic, Raymond R

2015-03-11

The performance characteristics of Li-ion batteries are intrinsically linked to evolving nanoscale interfacial electrochemical reactions. To probe the mechanisms of solid electrolyte interphase (SEI) formation and to track Li nucleation and growth mechanisms from a standard organic battery electrolyte (LiPF6 in EC:DMC), we used in situ electrochemical scanning transmission electron microscopy (ec-S/TEM) to perform controlled electrochemical potential sweep measurements while simultaneously imaging site-specific structures resulting from electrochemical reactions. A combined quantitative electrochemical measurement and STEM imaging approach is used to demonstrate that chemically sensitive annular dark field STEM imaging can be used to estimate the density of the evolving SEI and to identify Li-containing phases formed in the liquid cell. We report that the SEI is approximately twice as dense as the electrolyte as determined from imaging and electron scattering theory. We also observe site-specific locations where Li nucleates and grows on the surface and edge of the glassy carbon electrode. Lastly, this report demonstrates the investigative power of quantitative nanoscale imaging combined with electrochemical measurements for studying fluid-solid interfaces and their evolving chemistries.

Desiccation of a pool of blood: from fluid mechanics to forensic investigations

NASA Astrophysics Data System (ADS)

Nicloux, Celine; Brutin, David

2012-11-01

The evaporation of biological fluids (with droplet configuration) has been studied since a few years due to several applications in medical fields such as medical tests, drug screening, biostabilization... The evaporation of a drop of whole blood leads to the formation of final typical pattern of cracks. Flow motion, adhesion, gelation and fracturation all occur during the evaporation of this complex matter. During the drying, a sol-gel transition develops. The evaporation of a pool of blood is studied in order to link the pattern formation and the evaporation dynamics. We intend to transfer the knowledge acquired for drops on pool to improve the forensic investigations. In this study, we focus on both pool of blood and pure water to determine the transition region from drop to pool and then to characterize the evaporation rate in the pool configuration. The spreading of blood which can be seen as a complex fluid is strongly influenced the substrate nature. The initial contact angle of blood on different substrate nature will influence the maximum thickness of the layer and then will influence the evaporation mass flux. The authors gratefully acknowledge the help and the fruitful discussions raised with A. Boccoz.

Horizontal technology helps spark Louisiana`s Austin chalk trend

DOE Office of Scientific and Technical Information (OSTI.GOV)

Koen, A.D.

1996-04-29

A handful of companies paced by some of the most active operators in the US are pressing the limits of horizontal technology to ramp up Cretaceous Austin chalk exploration and development (E and D) across Louisiana. Companies find applications in Louisiana for lessons learned drilling horizontal wells to produce chalk intervals in Texas in Giddings, Pearsall, and Brookeland fields. Continuing advances in horizontal well technology are helping operators deal with deeper, hotter reservoirs in more complex geological settings that typify the chalk in Louisiana. Better horizontal drilling, completion, formation evaluation, and stimulation techniques have enabled operators to produce oil andmore » gas from formations previously thought to be uneconomical. Most of the improved capabilities stem from better horizontal tools. Horizontal drilling breakthroughs include dual powered mud motors and retrievable whipstocks, key links in the ability to drill wells with more than one horizontal lateral. Better geosteering tools have enabled operators to maintain horizontal wellbores in desired intervals by signaling bit positions downhole while drilling. This paper reviews the technology and provides a historical perspective on the various drilling programs which have been completed in this trend. It also makes predictions on future drilling successes.« less

Supra Arcade Downflows in the Earth's Magnetotail

NASA Astrophysics Data System (ADS)

Kobelski, A.; Savage, S. L.; Malaspina, D.

2017-12-01

Pinpointing the location of a single reconnection event in the corona is difficult due to observational constraints, although features directly resulting from this rapid reconfiguration of the field lines can be observed beyond the reconnection site. One set of such features are outflows in the form of post-reconnection loops, which have been linked to observations of supra-arcade downflows (SADs). SADs appear as sunward-traveling, density-depleted regions above flare arcades that develop during long duration eruptions. The limitations of remote sensing methods inherently results in ambiguities regarding the interpretation of SAD formation. Of particular interest is how these features are related to post-reconnection retracting magnetic field lines. In planetary magnetospheres, similar events to solar flares occur in the form of substorms, where reconnection in the anti-sunward tail of the magnetosphere causes field lines to retract toward the planet. Using data from the Time History of Events and Macroscopic Interactions during Substorms (THEMIS), we compare one particular aspect of substorms, dipolarization fronts, to SADs. Dipolarization fronts are observed as rapid but temporary changes in the magnetic field of the magnetotail plasma sheet into a more potential-like dipolar shape. These dipolarization fronts are believed to be retracting post-reconnection field lines. We combine data sets to show that the while the densities and magnetic fields involved vary greatly between the regimes, the plasma βs and Alfvén speeds are similar. These similarities allow direct comparison between the retracting field lines and their accompanying wakes of rarified plasma observed with THEMIS around the Earth to the observed morphological density depletions visible with XRT and AIA on the Sun. These results are an important source of feedback for models of coronal current sheets.

Fate of Methane Emitted from Dissociating Marine Hydrates: Modeling, Laboratory, and Field Constraints

DOE Office of Scientific and Technical Information (OSTI.GOV)

Juanes, Ruben

The overall goals of this research are: (1) to determine the physical fate of single and multiple methane bubbles emitted to the water column by dissociating gas hydrates at seep sites deep within the hydrate stability zone or at the updip limit of gas hydrate stability, and (2) to quantitatively link theoretical and laboratory findings on methane transport to the analysis of real-world field-scale methane plume data placed within the context of the degrading methane hydrate province on the US Atlantic margin. The project is arranged to advance on three interrelated fronts (numerical modeling, laboratory experiments, and analysis of field-basedmore » plume data) simultaneously. The fundamental objectives of each component are the following: Numerical modeling: Constraining the conditions under which rising bubbles become armored with hydrate, the impact of hydrate armoring on the eventual fate of a bubble’s methane, and the role of multiple bubble interactions in survival of methane plumes to very shallow depths in the water column. Laboratory experiments: Exploring the parameter space (e.g., bubble size, gas saturation in the liquid phase, “proximity” to the stability boundary) for formation of a hydrate shell around a free bubble in water, the rise rate of such bubbles, and the bubble’s acoustic characteristics using field-scale frequencies. Field component: Extending the results of numerical modeling and laboratory experiments to the field-scale using brand new, existing, public-domain, state-of-the-art real world data on US Atlantic margin methane seeps, without acquiring new field data in the course of this particular project. This component quantitatively analyzes data on Atlantic margin methane plumes and place those new plumes and their corresponding seeps within the context of gas hydrate degradation processes on this margin.« less

Supra Arcade Downflows in the Earth's Magnetotail

NASA Technical Reports Server (NTRS)

Kobelski, Adam; Savage, Sabrina L.; Malaspina, David M.

2017-01-01

Pinpointing the location of a single reconnection event in the corona is difficult due to observational constraints, although features directly resulting from this rapid reconfiguration of the field lines can be observed beyond the reconnection site. One set of such features are outflows in the form of post-reconnection loops, which have been linked to observations of supra-arcade downflows (SADs). SADs appear as sunward-traveling, density-depleted regions above flare arcades that develop during long duration eruptions. The limitations of remote sensing methods inherently results in ambiguities regarding the interpretation of SAD formation. Of particular interest is how these features are related to post-reconnection retracting magnetic field lines. In planetary magnetospheres, similar events to solar flares occur in the form of substorms, where reconnection in the anti-sunward tail of the magnetosphere causes field lines to retract toward the planet. Using data from the Time History of Events and Macroscopic Interactions during Substorms (THEMIS), we compare one particular aspect of substorms, dipolarization fronts, to SADs. Dipolarization fronts are observed as rapid but temporary changes in the magnetic field of the magnetotail plasma sheet into a more potential-like dipolar shape. These dipolarization fronts are believed to be retracting post-reconnection field lines. We combine data sets to show that the while the densities and magnetic fields involved vary greatly between the regimes, the plasma betas and Alfvén speeds are similar. These similarities allow direct comparison between the retracting field lines and their accompanying wakes of rarified plasma observed with THEMIS around the Earth to the observed morphological density depletions visible with XRT and AIA on the Sun. These results are an important source of feedback for models of coronal current sheets.

Communicating data quality through Web Map Services

NASA Astrophysics Data System (ADS)

Blower, Jon; Roberts, Charles; Griffiths, Guy; Lewis, Jane; Yang, Kevin

2013-04-01

The sharing and visualization of environmental data through spatial data infrastructures is becoming increasingly common. However, information about the quality of data is frequently unavailable or presented in an inconsistent fashion. ("Data quality" is a phrase with many possible meanings but here we define it as "fitness for purpose" - therefore different users have different notions of what constitutes a "high quality" dataset.) The GeoViQua project (www.geoviqua.org) is developing means for eliciting, formatting, discovering and visualizing quality information using ISO and Open Geospatial Consortium (OGC) standards. Here we describe one aspect of the innovations of the GeoViQua project. In this presentation, we shall demonstrate new developments in using Web Map Services to communicate data quality at the level of datasets, variables and individual samples. We shall outline a new draft set of conventions (known as "WMS-Q"), which describe a set of rules for using WMS to convey quality information (OGC draft Engineering Report 12-160). We shall demonstrate these conventions through new prototype software, based upon the widely-used ncWMS software, that applies these rules to enable the visualization of uncertainties in raster data such as satellite products and the results of numerical simulations. Many conceptual and practical issues have arisen from these experiments. How can source data be formatted so that a WMS implementation can detect the semantic links between variables (e.g. the links between a mean field and its variance)? The visualization of uncertainty can be a complex task - how can we provide users with the power and flexibility to choose an optimal strategy? How can we maintain compatibility (as far as possible) with existing WMS clients? We explore these questions with reference to existing standards and approaches, including UncertML, NetCDF-U and Styled Layer Descriptors.

Triggering autophagic cell death with a di-manganese(II) developmental therapeutic.

PubMed

Slator, Creina; Molphy, Zara; McKee, Vickie; Kellett, Andrew

2017-08-01

There is an unmet need for novel metal-based chemotherapeutics with alternative modes of action compared to clinical agents such as cisplatin and metallo-bleomycin. Recent attention in this field has focused on designing intracellular ROS-mediators as powerful cytotoxins of human cancers and identifying potentially unique toxic mechanisms underpinning their utility. Herein, we report the developmental di-manganese(II) therapeutic [Mn 2 (μ-oda)(phen) 4 (H 2 O) 2 ][Mn 2 (μ-oda)(phen) 4 (oda) 2 ]·4H 2 O (Mn-Oda) induces autophagy-promoted apoptosis in human ovarian cancer cells (SKOV3). The complex was initially identified to intercalate DNA by topoisomerase I unwinding and circular dichroism spectroscopy. Intracellular DNA damage, detected by γH2AX and the COMET assay, however, is not linked to direct Mn-Oda free radical generation, but is instead mediated through the promotion of intracellular reactive oxygen species (ROS) leading to autophagic vacuole formation and downstream nuclear degradation. To elucidate the cytotoxic profile of Mn-Oda, a wide range of biomarkers specific to apoptosis and autophagy including caspase release, mitochondrial membrane integrity, fluorogenic probe localisation, and cell cycle analysis were employed. Through these techniques, the activity of Mn-Oda was compared directly to i.) the pro-apoptotic clinical anticancer drug doxorubicin, ii.) the multimodal histone deacetylase inhibitor suberoyanilide hydroxamic acid, and iii.) the autophagy inducer rapamycin. In conjunction with ROS-specific trapping agents and established inhibitors of autophagy, we have identified autophagy-induction linked to mitochondrial superoxide production, with confocal image analysis of SKOV3 cells further supporting autophagosome formation. Copyright © 2017 The Authors. Published by Elsevier B.V. All rights reserved.

Generation of open biomedical datasets through ontology-driven transformation and integration processes.

PubMed

Carmen Legaz-García, María Del; Miñarro-Giménez, José Antonio; Menárguez-Tortosa, Marcos; Fernández-Breis, Jesualdo Tomás

2016-06-03

Biomedical research usually requires combining large volumes of data from multiple heterogeneous sources, which makes difficult the integrated exploitation of such data. The Semantic Web paradigm offers a natural technological space for data integration and exploitation by generating content readable by machines. Linked Open Data is a Semantic Web initiative that promotes the publication and sharing of data in machine readable semantic formats. We present an approach for the transformation and integration of heterogeneous biomedical data with the objective of generating open biomedical datasets in Semantic Web formats. The transformation of the data is based on the mappings between the entities of the data schema and the ontological infrastructure that provides the meaning to the content. Our approach permits different types of mappings and includes the possibility of defining complex transformation patterns. Once the mappings are defined, they can be automatically applied to datasets to generate logically consistent content and the mappings can be reused in further transformation processes. The results of our research are (1) a common transformation and integration process for heterogeneous biomedical data; (2) the application of Linked Open Data principles to generate interoperable, open, biomedical datasets; (3) a software tool, called SWIT, that implements the approach. In this paper we also describe how we have applied SWIT in different biomedical scenarios and some lessons learned. We have presented an approach that is able to generate open biomedical repositories in Semantic Web formats. SWIT is able to apply the Linked Open Data principles in the generation of the datasets, so allowing for linking their content to external repositories and creating linked open datasets. SWIT datasets may contain data from multiple sources and schemas, thus becoming integrated datasets.

Coevolution of a multilayer node-aligned network whose layers represent different social relations.

PubMed

Bahulkar, Ashwin; Szymanski, Boleslaw K; Chan, Kevin; Lizardo, Omar

2017-01-01

We examine the coevolution of three-layer node-aligned network of university students. The first layer is defined by nominations based on perceived prominence collected from repeated surveys during the first four semesters; the second is a behavioral layer representing actual students' interactions based on records of mobile calls and text messages; while the third is a behavioral layer representing potential face-to-face interactions suggested by bluetooth collocations. We address four interrelated questions. First, we ask whether the formation or dissolution of a link in one of the layers precedes or succeeds the formation or dissolution of the corresponding link in another layer (temporal dependencies). Second, we explore the causes of observed temporal dependencies between the layers. For those temporal dependencies that are confirmed, we measure the predictive capability of such dependencies. Third, we observe the progress towards nominations and the stages that lead to them. Finally, we examine whether the differences in dissolution rates of symmetric (undirected) versus asymmetric (directed) links co-exist in all layers. We find strong patterns of reciprocal temporal dependencies between the layers. In particular, the creation of an edge in either behavioral layer generally precedes the formation of a corresponding edge in the nomination layer. Conversely, the decay of a link in the nomination layer generally precedes a decline in the intensity of communication and collocation. Finally, nodes connected by asymmetric nomination edges have lower overall communication and collocation volumes and more asymmetric communication flows than the nodes linked by symmetric edges. We find that creation and dissolution of cognitively salient contacts have temporal dependencies with communication and collocation behavior.

Phosphodiester-mediated reaction of cisplatin with guanine in oligodeoxyribonucleotides.

PubMed

Campbell, Meghan A; Miller, Paul S

2008-12-02

The cancer chemotherapeutic agent cis-diamminedichloroplatinum(II) or cisplatin reacts primarily with guanines in DNA to form 1,2-Pt-GG and 1,3-Pt-GNG intrastrand cross-links and, to a lesser extent, G-G interstrand cross-links. Recent NMR evidence has suggested that cisplatin can also form a coordination complex with the phosphodiester internucleotide linkage of DNA. We have examined the effects of the phosphodiester backbone on the reactions of cisplatin with oligodeoxyribonucleotides that lack or contain a GTG sequence. Cisplatin forms a stable adduct with TpT that can be isolated by reversed phase HPLC. The cis-Pt-TpT adduct contains a single Pt, as determined by atomic absorption spectroscopy (AAS) and by electrospray ionization mass spectrometry (ESI-MS), and is resistant to digestion by snake venom phosphodiesterase. Treatment of the adduct with sodium cyanide regenerates TpT. Similar adduct formation was observed when T(pT)(8) was treated with cisplatin, but not when the phosphodiester linkages of T(pT)(8) were replaced with methylphosphonate groups. These results suggest that the platinum may be coordinated with the oxygens of the thymine and possibly with those of the phosphodiester group. As expected, reaction of a 9-mer containing a GTG sequence with cisplatin yielded an adduct that contained a 1,3-Pt-GTG intrastrand cross-link. However, we found that the number and placement of phosphodiesters surrounding a GTG sequence significantly affected intrastrand cross-link formation. Increasing the number of negatively charged phosphodiesters in the oligonucleotide increased the amount of GTG platination. Surrounding the GTG sequence with nonionic methylphosphonate linkages inhibited or eliminated cross-link formation. These observations suggest that interactions between cisplatin and the negatively charged phosphodiester backbone may play an important role in facilitating platination of guanine nucleotides in DNA.

OT1_kcoppin_1: A Herschel Survey of [OI]63um in 1

NASA Astrophysics Data System (ADS)

Coppin, K.

2010-07-01

Luminous obscured galaxies likely dominate the total bolometric emission from star-formation at the early epochs of z~2-3, and are most efficiently identified through their (sub)millimetre emission and are so-called submillimetre galaxies (SMGs). The intense starbursts in SMGs are fuelled by their large observed H2 gas reservoirs, as traced by CO interferometric surveys, although the details of how their immense luminosities (L_fir>5x10^12 Lsun) and star-formation rates (~100-1000 Msun/yr) are powered are not well understood: Are SMGs just scaled up ULIRGs with star-formation occurring in a highly-obscured nuclear region (with perhaps some contribution from an AGN)? Or does the star-formation occur in a more extended, cooler component, such as in "normal" star-forming galaxies. One route to tackling this question is to construct a data set of the brightest fine-structure ISM emission lines ([CII] and [OI]) in a well-defined sample of SMGs, which with ancillary CO data, will allow us to study the physics of the ISM and its interplay with the heating source. Similar benchmark data sets are being compiled by several Herschel programs for local LIRGs and ULIRGs, which will act as a link to help interpret the high-redshift SMG observations. Here we propose a timely and systematic study with the PACS spectrometer of [OI]63um in a flux-limited sample of SMGs with secure spectroscopic redshifts between 0.7

Negative ion formation and evolution in atmospheric pressure corona discharges between point-to-plane electrodes with arbitrary needle angle

NASA Astrophysics Data System (ADS)

Sekimoto, K.; Takayama, M.

2010-12-01

The change in the distribution pattern of negative ions HO-, NOx- and COx- observed on arbitrary point-to-plane electrode configuration has been investigated by varying the angle of needle to the plane electrode, under atmospheric pressure corona discharge conditions. The stationary inhomogeneous electric field distributions between the point-to-plane electrodes with arbitrary needle angle were calculated. The experimental and theoretical results obtained suggested that the negative ion evolutions progress along field lines established between the electrodes with arbitrary configurations and the resulting terminal ion formation on a given field line is attributable to the electric field strength on the needle tip surface where the field line arose. The NOx- and COx- ions were dominantly produced on the field lines arising from the needle tip apex region with the highest electric field strength, while the field lines emanating from the tip peripheral regions with lower field strength resulted in the formation of the HO- ion.

Seminary Formation: A Case Study from the Pontifical Beda College, Rome

ERIC Educational Resources Information Center

Strange, Roderick

2015-01-01

This case study account reviews issues related to seminary formation and education at the Beda College, Rome, including Fundamentals of Formation, Community Life, Organizing Formation, Intellectual Formation, Spiritual Formation, Pastoral Formation, and the challenges arising in these fields.

Toroidal magnet system

DOEpatents

Ohkawa, Tihiro; Baker, Charles C.

1981-01-01

In a plasma device having a toroidal plasma containment vessel, a toroidal field-generating coil system includes fixed linking coils each formed of first and second sections with the first section passing through a central opening through the containment vessel and the second section completing the linking coil to link the containment vessel. A plurality of removable unlinked coils are each formed of first and second C-shaped sections joined to each other at their open ends with their bights spaced apart. The second C-shaped section of each movable coil is removably mounted adjacent the second section of a linking coil, with the containment vessel disposed between the open ends of the first and second C-shaped sections. Electric current is passed through the linking and removable coils in opposite sense in the respective adjacent second sections to produce a net toroidal field.

The alignment of molecular cloud magnetic fields with the spiral arms in M33.

PubMed

Li, Hua-bai; Henning, Thomas

2011-11-16

The formation of molecular clouds, which serve as stellar nurseries in galaxies, is poorly understood. A class of cloud formation models suggests that a large-scale galactic magnetic field is irrelevant at the scale of individual clouds, because the turbulence and rotation of a cloud may randomize the orientation of its magnetic field. Alternatively, galactic fields could be strong enough to impose their direction upon individual clouds, thereby regulating cloud accumulation and fragmentation, and affecting the rate and efficiency of star formation. Our location in the disk of the Galaxy makes an assessment of the situation difficult. Here we report observations of the magnetic field orientation of six giant molecular cloud complexes in the nearby, almost face-on, galaxy M33. The fields are aligned with the spiral arms, suggesting that the large-scale field in M33 anchors the clouds. ©2011 Macmillan Publishers Limited. All rights reserved

Plasma wall sheath contributions to flux retention during the formation of field-reversed configurations

NASA Astrophysics Data System (ADS)

Milroy, R. D.; Slough, J. T.; Hoffman, A. L.

1984-06-01

Flux loss during field reversal on the TRX-1 field-reversed θ pinch is found to be much less than predicted by the inertial model of Green and Newton. This can be explained by a pressure bearing, conducting sheath which naturally forms at the wall and limits the flux loss. A one-dimensional (r-t) magnetohydrodynamic (MHD) numerical model has been used to study the formation and effectiveness of the sheath. The calculations are in excellent agreement with experimental measurements over a wide range of operating parameters. The results indicate that good flux trapping can be achieved through the field reversal phase of FRC formation with much slower external field reversal rates than in current experiments.

Duality linking standard and tachyon scalar field cosmologies

DOE Office of Scientific and Technical Information (OSTI.GOV)

Avelino, P. P.; Bazeia, D.; Losano, L.

2010-09-15

In this work we investigate the duality linking standard and tachyon scalar field homogeneous and isotropic cosmologies in N+1 dimensions. We determine the transformation between standard and tachyon scalar fields and between their associated potentials, corresponding to the same background evolution. We show that, in general, the duality is broken at a perturbative level, when deviations from a homogeneous and isotropic background are taken into account. However, we find that for slow-rolling fields the duality is still preserved at a linear level. We illustrate our results with specific examples of cosmological relevance, where the correspondence between scalar and tachyon scalarmore » field models can be calculated explicitly.« less

Formation of Irreversible H-bonds in Cellulose Materials

Treesearch

Umesh P. Agarwal; Sally A. Ralph; Rick S. Reiner; Nicole M. Stark

2015-01-01

Understanding of formation of irreversible Hbonds in cellulose is important in a number of fields. For example, fields as diverse as pulp and paper and enzymatic saccharification of cellulose are affected. In the present investigation, the phenomenon of formation of irreversible H-bonds is studied in a variety of celluloses and under two different drying conditions....

Geologic and hydrogeologic frameworks of the Biscayne aquifer in central Miami-Dade County, Florida

USGS Publications Warehouse

Wacker, Michael A.; Cunningham, Kevin J.; Williams, John H.

2014-01-01

Evaluations of the lithostratigraphy, lithofacies, paleontology, ichnology, depositional environments, and cyclostratigraphy from 11 test coreholes were linked to geophysical interpretations, and to results of hydraulic slug tests of six test coreholes at the Snapper Creek Well Field (SCWF), to construct geologic and hydrogeologic frameworks for the study area in central Miami-Dade County, Florida. The resulting geologic and hydrogeologic frameworks are consistent with those recently described for the Biscayne aquifer in the nearby Lake Belt area in Miami-Dade County and link the Lake Belt area frameworks with those developed for the SCWF study area. The hydrogeologic framework is characterized by a triple-porosity pore system of (1) matrix porosity (mainly mesoporous interparticle porosity, moldic porosity, and mesoporous to megaporous separate vugs), which under dynamic conditions, produces limited flow; (2) megaporous, touching-vug porosity that commonly forms stratiform groundwater passageways; and (3) conduit porosity, including bedding-plane vugs, decimeter-scale diameter vertical solution pipes, and meter-scale cavernous vugs. The various pore types and associated permeabilities generally have a predictable vertical spatial distribution related to the cyclostratigraphy. The Biscayne aquifer within the study area can be described as two major flow units separated by a single middle semiconfining unit. The upper Biscayne aquifer flow unit is present mainly within the Miami Limestone at the top of the aquifer and has the greatest hydraulic conductivity values, with a mean of 8,200 feet per day. The middle semiconfining unit, mainly within the upper Fort Thompson Formation, comprises continuous to discontinuous zones with (1) matrix porosity; (2) leaky, low permeability layers that may have up to centimeter-scale vuggy porosity with higher vertical permeability than horizontal permeability; and (3) stratiform flow zones composed of fossil moldic porosity, burrow related vugs, or irregular vugs. Flow zones with a mean hydraulic conductivity of 2,600 feet per day are present within the middle semiconfining unit, but none of the flow zones are continuous across the study area. The lower Biscayne aquifer flow unit comprises a group of flow zones in the lower part of the aquifer. These flow zones are present in the lower part of the Fort Thompson Formation and in some cases within the limestone or sandstone or both in the uppermost part of the Pinecrest Sand Member of the Tamiami Formation. The mean hydraulic conductivity of major flow zones within the lower Biscayne aquifer flow unit is 5,900 feet per day, and the mean value for minor flow zones is 2,900 feet per day. A semiconfining unit is present beneath the Biscayne aquifer. The boundary between the two hydrologic units is at the top or near the top of the Pinecrest Sand Member of the Tamiami Formation. The lower semiconfining unit has a hydraulic conductivity of less than 350 feet per day. The most productive zones of groundwater flow within the two Biscayne aquifer flow units have a characteristic pore system dominated by stratiform megaporosity related to selective dissolution of an Ophiomorpha-dominated ichnofabric. In the upper flow unit, decimeter-scale vertical solution pipes that are common in some areas of the SCWF study area contribute to high vertical permeability compared to that in areas without the pipes. Cross-hole flowmeter data collected from the SCWF test coreholes show that the distribution of vuggy porosity, matrix porosity, and permeability within the Biscayne aquifer of the SCWF is highly heterogeneous and anisotropic. Groundwater withdrawals from production well fields in southeastern Florida may be inducing recharge of the Biscayne aquifer from canals near the well fields that are used for water-management functions, such as flood control and well-field pumping. The SCWF was chosen as a location within Miami-Dade County to study the potential for such recharge to the Biscayne aquifer from the C–2 (Snapper Creek) canal that roughly divides the well field in half. Geologic, hydrogeologic, and hydraulic information on the aquifer collected during construction of monitoring wells within the SCWF could be used to evaluate the groundwater flow budget at the well-field scale.

Network formation in a multi-asset artificial stock market

NASA Astrophysics Data System (ADS)

Wu, Songtao; He, Jianmin; Li, Shouwei; Wang, Chao

2018-04-01

A multi-asset artificial stock market is developed. In the market, stocks are assigned to a number of sectors and traded by heterogeneous investors. The mechanism of continuous double auction is employed to clear order book and form daily closed prices. Simulation results of prices at the sector level show an intra-sector similarity and inter-sector distinctiveness, and returns of individual stocks have stylized facts that are ubiquitous in the real-world stock market. We find that the market risk factor has critical impact on both network topology transition and connection formation, and that sector risk factors account for the formation of intra-sector links and sector-based local interaction. In addition, the number of community in threshold-based networks is correlated negatively and positively with the value of correlation coefficients and the ratio of intra-sector links, which are respectively determined by intensity of sector risk factors and the number of sectors.

North Atlantic variability and its links to European climate over the last 3000 years.

PubMed

Moffa-Sánchez, Paola; Hall, Ian R

2017-11-23

The subpolar North Atlantic is a key location for the Earth's climate system. In the Labrador Sea, intense winter air-sea heat exchange drives the formation of deep waters and the surface circulation of warm waters around the subpolar gyre. This process therefore has the ability to modulate the oceanic northward heat transport. Recent studies reveal decadal variability in the formation of Labrador Sea Water. Yet, crucially, its longer-term history and links with European climate remain limited. Here we present new decadally resolved marine proxy reconstructions, which suggest weakened Labrador Sea Water formation and gyre strength with similar timing to the centennial cold periods recorded in terrestrial climate archives and historical records over the last 3000 years. These new data support that subpolar North Atlantic circulation changes, likely forced by increased southward flow of Arctic waters, contributed to modulating the climate of Europe with important societal impacts as revealed in European history.

Detection of ASC Speck Formation by Flow Cytometry and Chemical Cross-linking.

PubMed

Hoss, Florian; Rolfes, Verena; Davanso, Mariana R; Braga, Tarcio T; Franklin, Bernardo S

2018-01-01

Assembly of a relatively large protein aggregate or "speck" formed by the adaptor protein ASC is a common downstream step in the activation of most inflammasomes. This unique feature of ASC allows its visualization by several imaging techniques and constitutes a reliable and feasible readout for inflammasome activation in cells and tissues. We have previously described step-by-step protocols to generate immortalized cell lines stably expressing ASC fused to a fluorescent protein for measuring inflammasome activation by confocal microscopy, and immunofluorescence of endogenous ASC in primary cells. Here, we present two more methods to detect ASC speck formation: (1) Assessment of ASC speck formation by flow cytometry; and (2) Chemical cross-linking of ASC followed by immunoblotting. These methods allow for the discrimination of inflammasome-activated versus non-activated cells, the identification of lineage-specific inflammasome activation in complex cell mixtures, and sorting of inflammasome-activated cells for further analysis.

linkedISA: semantic representation of ISA-Tab experimental metadata.

PubMed

González-Beltrán, Alejandra; Maguire, Eamonn; Sansone, Susanna-Assunta; Rocca-Serra, Philippe

2014-01-01

Reporting and sharing experimental metadata- such as the experimental design, characteristics of the samples, and procedures applied, along with the analysis results, in a standardised manner ensures that datasets are comprehensible and, in principle, reproducible, comparable and reusable. Furthermore, sharing datasets in formats designed for consumption by humans and machines will also maximize their use. The Investigation/Study/Assay (ISA) open source metadata tracking framework facilitates standards-compliant collection, curation, visualization, storage and sharing of datasets, leveraging on other platforms to enable analysis and publication. The ISA software suite includes several components used in increasingly diverse set of life science and biomedical domains; it is underpinned by a general-purpose format, ISA-Tab, and conversions exist into formats required by public repositories. While ISA-Tab works well mainly as a human readable format, we have also implemented a linked data approach to semantically define the ISA-Tab syntax. We present a semantic web representation of the ISA-Tab syntax that complements ISA-Tab's syntactic interoperability with semantic interoperability. We introduce the linkedISA conversion tool from ISA-Tab to the Resource Description Framework (RDF), supporting mappings from the ISA syntax to multiple community-defined, open ontologies and capitalising on user-provided ontology annotations in the experimental metadata. We describe insights of the implementation and how annotations can be expanded driven by the metadata. We applied the conversion tool as part of Bio-GraphIIn, a web-based application supporting integration of the semantically-rich experimental descriptions. Designed in a user-friendly manner, the Bio-GraphIIn interface hides most of the complexities to the users, exposing a familiar tabular view of the experimental description to allow seamless interaction with the RDF representation, and visualising descriptors to drive the query over the semantic representation of the experimental design. In addition, we defined queries over the linkedISA RDF representation and demonstrated its use over the linkedISA conversion of datasets from Nature' Scientific Data online publication. Our linked data approach has allowed us to: 1) make the ISA-Tab semantics explicit and machine-processable, 2) exploit the existing ontology-based annotations in the ISA-Tab experimental descriptions, 3) augment the ISA-Tab syntax with new descriptive elements, 4) visualise and query elements related to the experimental design. Reasoning over ISA-Tab metadata and associated data will facilitate data integration and knowledge discovery.

Reaction mechanism of Ru(II) piano-stool complexes: umbrella sampling QM/MM MD study.

PubMed

Futera, Zdeněk; Burda, Jaroslav V

2014-07-15

Biologically relevant interactions of piano-stool ruthenium(II) complexes with ds-DNA are studied in this article by hybrid quantum mechanics-molecular mechanics (QM/MM) computational technique. The whole reaction mechanism is divided into three phases: (i) hydration of the [Ru(II) (η(6) -benzene)(en)Cl](+) complex, (ii) monoadduct formation between the resulting aqua-Ru(II) complex and N7 position of one of the guanines in the ds-DNA oligomer, and (iii) formation of the intrastrand Ru(II) bridge (cross-link) between two adjacent guanines. Free energy profiles of all the reactions are explored by QM/MM MD umbrella sampling approach where the Ru(II) complex and two guanines represent a quantum core, which is described by density functional theory methods. The combined QM/MM scheme is realized by our own software, which was developed to couple several quantum chemical programs (in this study Gaussian 09) and Amber 11 package. Calculated free energy barriers of the both ruthenium hydration and Ru(II)-N7(G) DNA binding process are in good agreement with experimentally measured rate constants. Then, this method was used to study the possibility of cross-link formation. One feasible pathway leading to Ru(II) guanine-guanine cross-link with synchronous releasing of the benzene ligand is predicted. The cross-linking is an exergonic process with the energy barrier lower than for the monoadduct reaction of Ru(II) complex with ds-DNA. Copyright © 2014 Wiley Periodicals, Inc.

Mineral induction by immobilized phosphoproteins

NASA Technical Reports Server (NTRS)

Saito, T.; Arsenault, A. L.; Yamauchi, M.; Kuboki, Y.; Crenshaw, M. A.

1997-01-01

Dentin phosphoproteins are thought to have a primary role in the deposition of mineral on the collagen of dentin. In this study we determined the type of binding between collagen and phosphoproteins necessary for mineral formation onto collagen fibrils and whether the phosphate esters are required. Bovine dentin phosphophoryn or phosvitin from egg yolk were immobilized on reconstituted skin type I collagen fibrils by adsorption or by covalent cross-linking. In some samples the ester phosphate was removed from the covalently cross-linked phosphoproteins by treatment with acid phosphatase. All samples were incubated at 37 degrees C in metastable solutions that do not spontaneously precipitate. Reconstituted collagen fibrils alone did not induce mineral formation. The phosphoproteins adsorbed to the collagen fibrils desorbed when the mineralization medium was added, and mineral was not induced. The mineral induced by the cross-linked phosphoproteins was apatite, and the crystals were confined to the surface of the collagen fibrils. With decreasing medium saturation the time required for mineral induction increased. The interfacial tensions calculated for apatite formation by either phosphoprotein cross-linked to collagen were about the same as that for phosphatidic acid liposomes and hydroxyapatite. This similarity in values indicates that the nucleation potential of these highly phosphorylated surfaces is about the same. It is concluded that phosphoproteins must be irreversibly bound to collagen fibrils for the mineralization of the collagen network in solutions that do not spontaneously precipitate. The phosphate esters of phosphoproteins are required for mineral induction, and the carboxylate groups are not sufficient.

Dependence of negative ion formation on inhomogeneous electric field strength in atmospheric pressure negative corona discharge

NASA Astrophysics Data System (ADS)

Sekimoto, K.; Takayama, M.

2008-12-01

The dependence of negative ion formation on the inhomogeneous electric field strength in atmospheric pressure negative corona discharge with point-to-plane electrodes has been described. The distribution of negative ions HO-, NOx - and COx - and their abundances on the plane electrode was obtained with a mass spectrometer. The ion distribution on the plane was divided into two regions, the center region on the needle axis and peripheral region occurring the dominant NOx - and COx - ions and HO- ion, respectively. The calculated electric field strength in inhomogeneous electric field established on the needle tip surface suggested that the abundant formation of NOx - and COx - ions and HO- ion is attributed to the high field strength at the tip apex region over 108 Vm-1 and the low field strength at the tip peripheral region of the order of 107 Vm-1, respectively. The formation of HO-, NOx - and COx - has been discussed from the standpoint of negative ion evolution based on the thermochemical reaction and the kinetic energy of electron emitted from the needle tip.

On-Demand Dissolution of Chemically Cross-Linked Hydrogels.

PubMed

Konieczynska, Marlena D; Grinstaff, Mark W

2017-02-21

The formation and subsequent on-demand dissolution of chemically cross-linked hydrogels is of keen interest to chemists, engineers, and clinicians. In this Account, we summarize our recent advances in the area of dissolvable chemically cross-linked hydrogels and provide a comparative discussion of other recent hydrogel systems. Using biocompatible macromonomers, we developed a library of cross-linked dendritic hydrogels that possess favorable properties, including biocompatibility, tissue adhesion, and swelling. Additionally, these hydrogels possess the unique ability to dissolve on-demand via application of a biocompatible aqueous solution. Each of the three hydrogel systems described employs a thiol-thioester exchange reaction as the mechanism of dissolution. These new materials successfully decrease bleeding in in vivo models of hepatic and aortic hemorrhage and dissolve on-demand, providing easy removal. In addition, we evaluated these hydrogels as dressings for second-degree burn wounds and performed proof-of-concept in vivo studies. These hydrogel wound dressings provide a means of repeatedly changing the dressing in a minimally invasive and atraumatic manner while also serving as a protective barrier against bacterial infection. Finally, we highlight the seminal work of other researchers in the field of dissolvable chemically cross-linked hydrogels using thiol-disulfide exchange, retro-Michael-type, and retro-Diels-Alder reactions. These chemistries provide a versatile synthetic toolbox to dissolve hydrogels in a controlled manner on time scales from minutes to weeks. Continued investigation of these dissolution approaches as well as the development of new chemical reactions will open doors to other avenues of on-demand dissolution and expand the application space for these materials. In summary, the management and closure of wounds after traumatic injury or surgical intervention are of significant clinical importance. Stimuli-responsive hydrogels that function as sealants, adhesives, or dressings are emerging as vital alternatives to current standards of care that rely upon conventional sutures, staples, or dressings.

Vortex instability in turbulent free-space propagation

NASA Astrophysics Data System (ADS)

Lavery, Martin P. J.

2018-04-01

The spatial structuring of optical fields is integral within many next generation optical metrology and communication techniques. A verifiable physical model of the propagation of these optical fields in a turbulent environment is important for developing effective mitigation techniques for the modal degradation that occurs in a free-space link. We present a method to simulate this modal degradation that agrees with recently reported experimental findings. A 1.5 km free-space link is emulated by decomposing the optical turbulence that accumulates over a long distance link, into many, weakly perturbing steps of 10 m. This simulation shows that the high-order vortex at the centre of the helical phase profiles in modes that carry orbital angular momentum of | {\\ell }| ≥slant 2{\\hslash } are unstable and fracture into many vortices when they propagate over the link. This splitting presents issues for the application of turbulence mitigation techniques. The usefulness of pre-correction, post-correction, and complex field conjugation techniques are discussed.

SIMBOL-X: A Formation Flying Mission on HEO for Exploring the Universe

NASA Technical Reports Server (NTRS)

Gamet, Philippe; Epenoy, R.; Salcedo, C.

2007-01-01

SIMBOL-X is a high energy new generation telescope covering by a single instrument a continuous energy range starting at classical X-rays and extending to hard X-rays, i.e. from 0.5 to 80 keV. It is using in this field a focalizing payload which until now was used for energy below 10 keV only, via the construction of a telescope distributed on two satellites flying in formation. SIMBOL-X permits a gain of two orders of magnitude in sensibility and spatial resolution in comparison to state of the art hard X-rays instruments. The mirror satellite will be in free flight on a high elliptical orbit and will target the object to observe very precisely, thus focusing the hard X-ray emission thanks to this mirror module. At the focal point area which is situated 20 meters behind the mirror satellite, the detector satellite maintains its position on a forced orbit thanks to a radio link with the mirror satellite and a lateral displacement sensor using a beam emitted onboard the mirror satellite. This configuration is said "formation flying". The location of the detector satellite shall be very finely tuned as it carries the focal plane of this distributed telescope. To provide science measurements, the Simbol-X orbit has been chosen High elliptic (HEO), which means elliptical orbit with a high perigee altitude. Preliminary studies where made with an orbit with an altitude of the perigee of 44000km and altitude of the apogee of 253000km. The orbit was seven days ground track repeated in order to maintain a perigee pass over the Malindi ground station to download scientific telemetry. But as studies went on, difficulties in mass budget, link budget, perigee maintenance and formation flying maintenance were raised. This was mainly due to the vicinity of the Moon and its disturbing effect on the satellites orbits. Alternative orbits have been proposed in order to demonstrate the feasibility of the mission. The problematic of bringing the two satellites from their injection orbit to their operational orbit 20 m apart from each other and then maintain this configuration is very challenging. It requires theoretical development of the relative motion between two satellites in high eccentric orbit with large differential disturbance on the two bodies. This paper will present the mission analysis for the Simbol-X satellites with the complex problematic of doing formation flying in high elliptic orbit.

Orogenesis of the Oman Mountains - a new geodynamic model based on structural geology, plate reconstructions and thermochronology

NASA Astrophysics Data System (ADS)

Grobe, Arne; Virgo, Simon; von Hagke, Christoph; Ralf, Littke; Urai, Janos L.

2017-04-01

Ophiolite obduction is an integral part of mountain building in many orogens. However, because the obduction stage is usually overprinted by later tectonic events, obduction geodynamics and its influence on orogenesis are often elusive. The best-preserved ophiolite on Earth is the Semail Ophiolite, Oman Mountains. 350 km of ophiolite and the entire overthrusted margin sequence are exposed perpendicular to the direction of obduction along the northeastern coast of the Sultanate of Oman. Despite excellent exposure, it has been debated whether early stages of obduction included formation of a micro-plate, or if the Oman Mountains result from collision of two macro-plates (e.g. Breton et al., 2004). Furthermore, different tectonic models for the Oman Mountains exist, and it is unclear how structural and tectonic phases relate to geodynamic context. Here we present a multidisciplinary approach to constrain orogenesis of the Oman Mountains. To this end, we first restore the structural evolution of the carbonate platform in the footwall of the Semail ophiolite. Relative ages of nine structural generations can be distinguished, based on more than 1,500 vein and fault overprintings. Top-to-S overthrusting of the Semail ophiolite is witnessed by three different generations of bedding confined veins in an anticlockwise rotating stress field. Rapid burial induced the formation of overpressure cells, and generation and migration of hydrocarbons (Fink et al., 2015; Grobe et al., 2016). Subsequent tectonic thinning of the ophiolite took place above a top-to-NNE crustal scale, ductile shear zone, deforming existing veins and forming a cleavage in clay-rich layers. Ongoing extension formed normal- to oblique-slip faults and horst-graben structures. This was followed by NE-SW oriented ductile shortening, the formation of the Jebel Akhdar anticline, potentially controlled by the positions of the horst-graben structures. Exhumation in the Cenozoic was associated with low angle normal faults on the northern flank of the anticline. We link these results with the geodynamic framework of the area, constrained by plate tectonic reconstructions. Furthermore, we constrain the exhumation history of the mountain belt using zircon (U-Th-Sm)/He dating. Geodynamic and exhumation events can be linked to structural generations. This results in a new tectonic model of the Oman Mountains. We find a remarkable along-strike consistency of mountain building phases and argue involvement of a micro-plate is not required. Breton, J.P., Béchennec, F., Le Métour, J., Moen-Maurel, L., Razin, P., 2004. Eoalpine (Cretaceous) evolution of the Oman Tethyan continental margin: Insights from a structural field study in Jabal Akhdar (Oman Mountains). GeoArabia 9, 41-58. Fink, R., Virgo, S., Arndt, M., Visser, W., Littke, R., Urai, J.L.L., 2015. Solid bitumen in calcite veins from the Natih Formation in the Oman Mountains: Multiple phases of petroleum migration in a changing stress field. Int. J. Coal Geol. 157, 39-51. doi:10.1016/j.coal.2015.07.012 Grobe, A., Urai, J.L.L., Littke, R., Lünsdorf, N.K.K., 2016. Hydrocarbon generation and migration under a large overthrust: The carbonate platform under the Semail Ophiolite, Jebel Akhdar, Oman. Int. J. Coal Geol. 1-17. doi:10.1016/j.coal.2016.02.007

Strain fields induced by kink band propagation in Cu-Nb nanolaminate composites

DOE PAGES

Nizolek, T. J.; Begley, M. R.; McCabe, R. J.; ...

2017-07-01

Kink band formation is a common deformation mode for anisotropic materials and has been observed in polymer matrix fiber composites, single crystals, geological formations, and recently in metallic nanolaminates. While numerous studies have been devoted to kink band formation, the majority do not consider the often rapid and unstable process of kink band propagation. In this paper, we take advantage of stable kink band formation in Cu-Nb nanolaminates to quantitatively map the local strain fields surrounding a propagating kink band during uniaxial compression. Kink bands are observed to initiate at specimen edges, propagate across the sample during a rising globalmore » stress, and induce extended strain fields in the non-kinked material surrounding the propagating kink band. Finally, it is proposed that these stress/strain fields significantly contribute to the total energy dissipated during kinking and, analogous to crack tip stress/strain fields, influence the direction of kink propagation and therefore the kink band inclination angle.« less

A study of the kinematic dynamo equation with time-dependent coefficients

NASA Technical Reports Server (NTRS)

Ko, Chung-Ming

1990-01-01

During an active star formation epoch the interstellar medium of a galaxy is in a hyperactive state, and the average turbulent velocity is higher than in the long periods between star formation epochs. The galactic magnetic field generated by dynamo action depends strongly on the turbulent velocity, so that generation of magnetic field should vary with star formation activity. This paper is a preliminary study of the kinematic dynamo equation with time-dependent coefficients simulating the time dependence of the star formation activities. Ko and Parker argued in a simple model that the thickness of the dynamo region is the most sensitive dynamo parameter. The present work shows that the effect of inflating the galactic disk suddenly is to transform a stationary magnetic field into a growing field while keeping the profile more or less intact. Plane wave solutions for a dynamo with power-law time-dependent parameters show that the field may decay first and then grow, and vice versa, which is quite different from a constant parameter dynamo.

Development of the Optical Communications Telescope Laboratory: A Laser Communications Relay Demonstration Ground Station

NASA Technical Reports Server (NTRS)

Wilson, K. E.; Antsos, D.; Roberts, L. C. Jr.,; Piazzolla, S.; Clare, L. P.; Croonquist, A. P.

2012-01-01

The Laser Communications Relay Demonstration (LCRD) project will demonstrate high bandwidth space to ground bi-directional optical communications links between a geosynchronous satellite and two LCRD optical ground stations located in the southwestern United States. The project plans to operate for two years with a possible extension to five. Objectives of the demonstration include the development of operational strategies to prototype optical link and relay services for the next generation tracking and data relay satellites. Key technologies to be demonstrated include adaptive optics to correct for clear air turbulence-induced wave front aberrations on the downlink, and advanced networking concepts for assured and automated data delivery. Expanded link availability will be demonstrated by supporting operations at small sun-Earth-probe angles. Planned optical modulation formats support future concepts of near-Earth satellite user services to a maximum of 1.244 Gb/s differential phase shift keying modulation and pulse position modulations formats for deep space links at data rates up to 311 Mb/s. Atmospheric monitoring instruments that will characterize the optical channel during the link include a sun photometer to measure atmospheric transmittance, a solar scintillometer, and a cloud camera to measure the line of sight cloud cover. This paper describes the planned development of the JPL optical ground station.

Discrete stages of core formation survive the Moon-forming impact

NASA Astrophysics Data System (ADS)

Jackson, C.; Bennett, N.; Du, Z.; Fei, Y.

2016-12-01

There is mounting evidence that Earth contains isotopic variations produced by short-lived systems, namely Hf-W and I-Xe. The lifetimes of these systems are 50 Ma and 80 Ma, respectively, requiring that chemical heterogeneities that were formed extremely early in solar system history and have survived within Earth's mantle to the modern day. The isotopic heterogeneity observed within Earth's mantle contrasts the isotopic similarity of bulk silicate Earth and bulk silicate Moon. This suggests the process(es) responsible for the isotopic variations within Earth predate the Moon-forming impact. Here, we focus on the potential role of core-formation in generating coupled isotopic variations associated with the Hf-W and I-Xe systems. We present metal-silicate partitioning data for W and I from experiments employing laser-heated diamond anvil cells. Experiments were conducted up to the pressure and temperature conditions directly relevant to core formation at GSECARS, APS. Samples were prepared using focused ion beam milling and analyzed by field emission electron microbeam techniques (EDS & WDS). These analyses demonstrate that W and I preferentially partition into the core under a wide range of conditions. In combination with literature data, this suggests that core formation left the residual mantle with an increased Hf/W ratio and a decreased I/Xe ratio. These parent-daughter fractionations lead to radiogenic W and unradiogenic Xe isotopic signatures compared to mantle that experienced the extraction of core material at a later date, on average. Relatively radiogenic W and unradiogenic Xe isotopic signatures are associated with plume rocks, potentially linking the plume source to mantle reservoirs that experienced early core extraction relative to the bulk mantle. Compositional variables, pressure, and temperature also affect the magnitude of Hf/W and I/Xe fractionation associated with core formation. The interplay of these variables will be evaluated alongside the timing of core formation in the context of generating short-lived isotopic variations associated with plume mantle.

The Most Complete View Yet of Massive Star formation in the Local Universe

NASA Astrophysics Data System (ADS)

Leroy, Adam

We propose to take advantage of the nearly all-sky coverage of the Galaxy Evolution Explorer and Wide Field Infrared Surveyor missions to construct a combined atlas of ultraviolet and mid-infrared intensity images for almost all massive galaxies within 40 Mpc as well as several key local galaxy surveys beyond this volume. Following established methodology, we will use these to construct resolved estimates of the star formation rate surface density (the recent rate of star formation per unit area) across the whole local galaxy population. We will then use this atlas to measure basic facts about star formation in the local universe: where are most stars forming? Where are galaxies of different masses and morphologies most rapidly increasing their mass and where are they quenched? How common are ``extreme'' events like nuclear or off-nuclear starbursts? The limited resolution of infrared telescopes has made it difficult to address these questions in large samples before the latest generation of NASA missions. These local galaxies have been, and will remain, the subject of much focused study. The atlas will also serve as a reference point to place smaller samples studied in greater detail into the full context of the galaxy population; for example, we highlight the ability to place detailed studies of gas and dust in moderate-size galaxies into the broader context of galaxy evolution. The prospect to make homogenously constructed, extinction robust, resolved maps of a huge set of galaxies is only now available and offers a powerful chance to link these two fields (nearby galaxy studies and statistical studies of galaxy evolution and population). It will also serve as an invaluable resource to target future detailed studies with telescopes like the James Webb Space Telescope that are optimized for extraordinarily detailed study of comparatively small areas and so require the sort of “finding chart” that we propose to produce. This goal of mapping all star formation in the local galaxy population bears directly on NASA's broad goals of understand how the universe works and the origins of stars, planets, and galaxies. This project will also enhance the legacy value of two phenomenal NASA missions by producing a set of broadly useful high level science products and using them to address fundamental scientific questions. It will also aid in targeting of future NASA observations and help place key work by earlier missions in context. It will also be a substantial resource to the community, producing useful data products and serving as a bridge between the often too-separated fields of nearby galaxy studies and galaxy evolution.

Structural basis of G protein-coupled receptor-Gi protein interaction: formation of the cannabinoid CB2 receptor-Gi protein complex.

PubMed

Mnpotra, Jagjeet S; Qiao, Zhuanhong; Cai, Jian; Lynch, Diane L; Grossfield, Alan; Leioatts, Nicholas; Hurst, Dow P; Pitman, Michael C; Song, Zhao-Hui; Reggio, Patricia H

2014-07-18

In this study, we applied a comprehensive G protein-coupled receptor-Gαi protein chemical cross-linking strategy to map the cannabinoid receptor subtype 2 (CB2)-Gαi interface and then used molecular dynamics simulations to explore the dynamics of complex formation. Three cross-link sites were identified using LC-MS/MS and electrospray ionization-MS/MS as follows: 1) a sulfhydryl cross-link between C3.53(134) in TMH3 and the Gαi C-terminal i-3 residue Cys-351; 2) a lysine cross-link between K6.35(245) in TMH6 and the Gαi C-terminal i-5 residue, Lys-349; and 3) a lysine cross-link between K5.64(215) in TMH5 and the Gαi α4β6 loop residue, Lys-317. To investigate the dynamics and nature of the conformational changes involved in CB2·Gi complex formation, we carried out microsecond-time scale molecular dynamics simulations of the CB2 R*·Gαi1β1γ2 complex embedded in a 1-palmitoyl-2-oleoyl-phosphatidylcholine bilayer, using cross-linking information as validation. Our results show that although molecular dynamics simulations started with the G protein orientation in the β2-AR*·Gαsβ1γ2 complex crystal structure, the Gαi1β1γ2 protein reoriented itself within 300 ns. Two major changes occurred as follows. 1) The Gαi1 α5 helix tilt changed due to the outward movement of TMH5 in CB2 R*. 2) A 25° clockwise rotation of Gαi1β1γ2 underneath CB2 R* occurred, with rotation ceasing when Pro-139 (IC-2 loop) anchors in a hydrophobic pocket on Gαi1 (Val-34, Leu-194, Phe-196, Phe-336, Thr-340, Ile-343, and Ile-344). In this complex, all three experimentally identified cross-links can occur. These findings should be relevant for other class A G protein-coupled receptors that couple to Gi proteins. © 2014 by The American Society for Biochemistry and Molecular Biology, Inc.

Substrate biochemistry control on the pathways for the formation of soil organic matter

NASA Astrophysics Data System (ADS)

Almeida, L. F.; Hurtarte, L. C.; Souza, I. F.; Barros, E. M.; Vergutz, L.; Silva, I. R.

2017-12-01

Linking plant litter biochemistry, its decomposition and soil organic matter (SOM) formation is not straightforward. To address this issue, we evaluated the decomposition of four biochemical fractions operationally defined as i) hot-water extractable (HWE), ii) total solvent (acetone) extractable (TSE), iii) acid-base (HNO3-KOH) unhydrolyzable cellulosic fraction (CF), and iv) acid(H2SO4) unhydrolyzable (AUR) and the transfer of C from these fractions to SOM. Each biochemical fraction was Soxhlet-extracted from isotopically labeled (13C) leaves, twigs, bark and roots of eucalypt plants (120 days old). The molecular composition of each fraction was inferred from thermochemolysis with tertamethylammonium (TMAH), followed by gas chromatography coupled o mass spectrometry (GC-MS). For the incubation, we collected soil samples from the topsoil (0-20 cm) of a sandy-clay loam, kaolinitic Typic Hapludox (Haplic Ferralsol). Four plant organs and four biochemical fractions were arranged into a (4 4) + 1 factorial scheme, including one control treatment (soil only). The samples were incubated at 80% of their water-holding capacity and kept under controlled temperature (25 ºC). The decomposition of the biochemical fractions was monitored by determining the CO2 concentration into the headspace of the vials. Finished the incubation, soil samples were submitted to density followed by particle-size fractionation. HWE and CF was decomposed at faster rates than TSE and AUR throughout the incubation. The soil fraction <53 µm retained a significantly higher proportion of the initial input of HWE (32%) and AUR (31%) than TSE (19%) or CF (15%). Light fraction organic matter (LFOM) with density <1.8 g cm-3, retained a significant proportion of AUR (37%) and TSE (32%) while CF was mostly lost as CO2 (79%). Selective preservation of organic materials (e.g., long-chain lipids) within AUR and TSE fractions appears to be a significant pathway for SOM formation. A microbial-driven pathway cannot be ruled out for any biochemical fraction, but seems more relevant for HWE and CF. In short-term, substrate biochemistry exerts a strong influence on the conversion of eucalypt litter fractions into either CO2 or SOM. Such results warrant the relevance of field-based study to link plant litter biochemistry and SOM formation in long-term.

Availability of Ada and C++ Compilers, Tools, Education and Training

DTIC Science & Technology

1991-07-01

executable mini-specs, to support import of existing code. Automated database population/change propagation. 9. Documentation generation: via FrameMaker . 10...formats. 12. Links to other tools: i. Atherton’s Software Backplane. ii. 4GLS iii. Interleaf and FrameMaker publishing. 13. Output formats: PostScript...by end 󈨟. 11. Output formats: ASCII, PostScript, Interleaf, HPGL, Troff, nroff, FrameMaker , WordPerfect. 12. User interface: Menu and mouse

Formation of magnetic discontinuities through viscous relaxation

DOE Office of Scientific and Technical Information (OSTI.GOV)

Kumar, Sanjay; Bhattacharyya, R.; Smolarkiewicz, P. K.

2014-05-15

According to Parker's magnetostatic theorem, tangential discontinuities in magnetic field, or current sheets (CSs), are generally unavoidable in an equilibrium magnetofluid with infinite electrical conductivity and complex magnetic topology. These CSs are due to a failure of a magnetic field in achieving force-balance everywhere and preserving its topology while remaining in a spatially continuous state. A recent work [Kumar, Bhattacharyya, and Smolarkiewicz, Phys. Plasmas 20, 112903 (2013)] demonstrated this CS formation utilizing numerical simulations in terms of the vector magnetic field. The magnetohydrodynamic simulations presented here complement the above work by demonstrating CS formation by employing a novel approach ofmore » describing the magnetofluid evolution in terms of magnetic flux surfaces instead of the vector magnetic field. The magnetic flux surfaces being the possible sites on which CSs develop, this approach provides a direct visualization of the CS formation, helpful in understanding the governing dynamics. The simulations confirm development of tangential discontinuities through a favorable contortion of magnetic flux surfaces, as the magnetofluid undergoes a topology-preserving viscous relaxation from an initial non-equilibrium state with twisted magnetic field. A crucial finding of this work is in its demonstration of CS formation at spatial locations away from the magnetic nulls.« less

A Global Digital Database and Atlas of Quaternary Dune Fields and Sand Seas

NASA Astrophysics Data System (ADS)

Lancaster, N.; Halfen, A. F.

2012-12-01

Sand seas and dune fields are globally significant sedimentary deposits, which archive the effects of climate and sea level change on a variety of temporal and spatial scales. Dune systems provide a valuable source of information on past climate conditions, including evidence for periods of aridity and unique data on past wind regimes. Researchers have compiled vast quantities of geomorphic and chronological data from these dune systems for nearly half a century, however, these data remain disconnected, making comparisons of dune systems challenging at global and regional scales. The primary goal of this project is to develop a global digital database of chronologic information for periods of desert sand dune accumulation and stabilization, as well as, pertinent stratigraphic and geomorphic information. This database can then be used by scientists to 1) document the history of aeolian processes in arid regions with emphasis on dune systems in low and mid latitude deserts, 2) correlate periods of sand accumulation and stability with other terrestrial and marine paleoclimatic proxies and records, and 3) develop an improved understanding of the response of dune systems to climate change. The database currently resides in Microsoft Access format, which allows searching and filtering of data. The database includes 4 linked tables containing information on the site, chronological control (radiocarbon or luminescence), and the pertinent literature citations. Thus far the database contains information for 838 sites world wide, comprising 2598 luminescence and radiocarbon ages, though these numbers increase regularly as new data is added. The database is only available on request at this time, however, an online, GIS database is being developed and will be available in the near future. Data outputs from the online database will include PDF reports and Google Earth formatted data sets for quick viewing of data. Additionally, data will be available in a gridded format for wider use in data-model comparisons. Sites in database August 2012

Structural link between giant molybdenum oxide based ions and derived Keggin structure: modular assemblies based on the [BW11O39]9- ion and pentagonal {M'M5} units (M' = W; M = Mo,W).

PubMed

Leclerc-Laronze, Nathalie; Marrot, Jérôme; Thouvenot, René; Cadot, Emmanuel

2009-01-01

Linked to the Pentagon: The addition of molybdate to [HBW(11)O(39)](8-) ions leads to the formation of mixed pentagonal units {W(Mo(5))} and {W(WMo(4))} trapped as linkers in the resulting modular assemblies, thus establishing the first link between the conventional Keggin ion derivatives and the giant molybdenum oxide and keplerate ions.

Cross-links (XL) and Zn action in ferritin related to an H-specific site

DOE Office of Scientific and Technical Information (OSTI.GOV)

Yablonski, M.J.; Theil, E.C.

1991-03-15

Zn and subunit cross-links (F{sub 2}DNB) alter ferritin iron core formation in vivo and in vitro; the effect is observed in ferritins composed of two subunit types (H and L). Protein coats from sheep spleen ferritin (SSF) ({plus minus} XL), a model for a protein with H and L subunits (1:1), and horse spleen ferritin (HSF), a model for H deficient protein were reconstituted with Fe{sup 2+}, {plus minus} Zn, at pH 6.1 and 7.0 in order to investigate the effects of Zn and XLs on H and L subunits. Core formation was measured both as {Delta}A{sub 420} and themore » accessibility of Fe{sup 2+} to 1,10-phenanthroline. At pH 6.1, Zn decreased the {Delta}A{sub 420} in 1 min {ge} 87X (SSF) or 15X (HSF). XLs ({plus minus}Zn) decreased {Delta}A{sub 420} at 1 min similarly; at pH 7.0, Zn reduced {Delta}A{sub 420} at 1 min in SSF 3X with no effect on HSF. At both values of pH, Zn increased accessibility equally for SSF and HSF. The data indicate that : Zn has different effects on core formation measured as {Delta}A{sub 420} at 1 min or Fe{sup 2+} entry into ferritin; cross-links and Zn affects a common site involved in core formation; and Zn affects an H subunit-specific site which may involve histidine.« less

Structural elucidation of polysaccharide fractions from the brown alga Coccophora langsdorfii and in vitro investigation of their anticancer activity.

PubMed

Imbs, Tatiana I; Ermakova, Svetlana P; Malyarenko Vishchuk, Olesya S; Isakov, Vladimir V; Zvyagintseva, Tatiana N

2016-01-01

Laminaran, fucoidan, and alginate were isolated from the brown alga Coccophora langsdorfii collected in the Japan Sea. The structural characteristics of polysaccharides were investigated by NMR spectroscopy. The laminaran was determined as β-d-glucan, which consisted of 80% of 1,3- and 20% of 1,6-linked residues and was terminated with mannitol. The alginate was a guluronic acid-rich polysaccharide (M/G=0.85). Fucoidan, sulfated α-l-fucan, contained a linear backbone of alternating (1→3)- and (1→4)- linked α-l-fucopyranose residues with sulfate at C2 and C4 of (1→3)-α-l-fucopyranose residues. Anticancer activity of this fucoidan was investigated in comparison with activity of fucoidan having similar linear backbone from the brown alga Fucus evanescens. The fucoidan from C. langsdorfii significantly inhibited colony formation of SK-MEL-5 and SK-MEL-28 melanoma cells (the percentage of inhibition was 28 and 76, respectively) and weakly inhibited colony formation of breast adenocarcinoma cells MDA-MB-231 (the percentage of inhibition was about 5). Similar results were obtained for fucoidan from F. evanescens; the percentage of inhibition of colony formation of SK-MEL-5 and SK-MEL-28 melanoma cells was 54 and 56, respectively. The inhibition of colony formation of breast adenocarcinoma cells MDA-MB-231 was weak. We suppose that other sulfated and partially acetylated fucoidans consisting of (1→3)- and (1→4)-linked α-l-fucopyranose residues may suppress progression of melanoma cell colony formation similar to fucoidans of C. langsdorfii and F. evanescens. Copyright © 2015 Elsevier Ltd. All rights reserved.

Formation of Hirano Bodies Induced by Expression of an Actin Cross-Linking Protein with a Gain-of-Function Mutation

PubMed Central

Maselli, Andrew; Furukawa, Ruth; Thomson, Susanne A. M.; Davis, Richard C.; Fechheimer, Marcus

2003-01-01

Hirano bodies are paracrystalline actin filament-containing structures reported to be associated with a variety of neurodegenerative diseases. However, the biological function of Hirano bodies remains poorly understood, since nearly all prior studies of these structures were done with postmortem samples of tissue. In the present study, we generated a full-length form of a Dictyostelium 34-kDa actin cross-linking protein with point mutations in the first putative EF hand, termed 34-kDa ΔEF1. The 34-kDa ΔEF1 protein binds calcium normally but has activated actin binding that is unregulated by calcium. The expression of the 34-kDa ΔEF1 protein in Dictyostelium induces the formation of Hirano bodies, as assessed by both fluorescence microscopy and transmission electron microscopy. Dictyostelium cells bearing Hirano bodies grow normally, indicating that Hirano bodies are not associated with cell death and are not deleterious to cell growth. Moreover, the expression of the 34-kDa ΔEF1 protein rescues the phenotypes of cells lacking the 34-kDa protein and cells lacking both the 34-kDa protein and α-actinin. Finally, the expression of the 34-kDa ΔEF1 protein also initiates the formation of Hirano bodies in cultured mouse fibroblasts. These results show that the failure to regulate the activity and/or affinity of an actin cross-linking protein can provide a signal for the formation of Hirano bodies. More generally, the formation of Hirano bodies is a cellular response to or a consequence of aberrant function of the actin cytoskeleton. PMID:12912897

Experimental study of the formation of field-reversed configurations employing high-order multipole fields

NASA Astrophysics Data System (ADS)

Slough, J. T.; Hoffman, A. L.

1990-04-01

A high-order multipole ``barrier'' field was applied at the vacuum tube wall in the TRX experiment [Phys. Fluids B 1, 840 (1989)] during both the preionization and field reversal phases of field-reversed configuration (FRC) formation. Use of this field during field reversal resulted in a significant reduction of impurities as well as increased flux trapping. With a large enough Bθ at the wall, sheath detachment from the wall became apparent, and flux loss through the sheath became negligible (<10%). At larger wall Bθ (>1.5 kG), destructive rotational spin-up occurred, driven by Hall current forces. When the multipole barrier field was also applied during either axial discharge or ringing theta current preionization, a very symmetric and uniform breakdown of the fill gas was achieved. In particular, using ringing theta preionization, complete ionization of the fill gas was accomplished with purely inductive fields of remarkably low magnitude, where Ez≤3 V/cm, and Eθ≤20 V/cm. Due to the improved ionization symmetry, about 65% to 75% of the lift-off flux (flux remaining after field reversal) could be retained through the remaining formation processes into an equilibrium FRC. Using the multipole field during both preionization and formation, it was possible to form FRC's with good confinement with greater than 3 mWb of trapped flux at 15 mTorr D2 or H2 in a 10 cm radius device. Values of s in excess of 4 could be achieved in this manner.

A climatic trigger for the giant Troll pockmark field in the northern North Sea

NASA Astrophysics Data System (ADS)

Mazzini, Adriano; Svensen, Henrik H.; Forsberg, Carl Fredrik; Linge, Henriette; Lauritzen, Stein-Erik; Haflidason, Haflidi; Hammer, Øyvind; Planke, Sverre; Tjelta, Tor Inge

2017-04-01

Pockmarks are seafloor craters usually formed during methane release on continental margins. However, the mechanisms behind their formation and dynamics remain elusive. Here we report detailed investigations on one of the World's largest pockmark fields located in the Troll region in the northern North Sea. Seafloor investigations show that >7000 pockmarks are present in a ∼600 km2 area. A similar density of pockmarks is likely present over a 15,000 km2 region outside our study area. Based on extensive monitoring, coring, geophysical and geochemical analyses, no indications of active gas seepage were found. Still, geochemical data from carbonate blocks collected from these pockmarks indicate a methanogenic origin linked to gas hydrate dissociation and past fluid venting at the seafloor. We have dated the carbonates using the U-Th method in order to constrain the pockmark formation. The carbonates gave an isochron age of 9.59 ± 1.38 ka, i.e. belonging to the initial Holocene. Moreover, radiocarbon dating of microfossils in the sediments inside the pockmarks is consistent with the ages derived from the carbonates. Based on pressure and temperature modelling, we show that the last deglaciation could have triggered dissociation of gas hydrates present in the region of the northern part of the Norwegian Channel, causing degassing of 0.26 MtCH4/km2 at the seafloor. Our results stress the importance of external climatic forcing of the dynamics of the seafloor, and the role of the rapid warming following the Younger Dryas in pacing the marine gas hydrate reservoir.

78 FR 36786 - Linking Marketplace Heparin Product Attributes and Manufacturing Processes to Bioactivity and...

Federal Register 2010, 2011, 2012, 2013, 2014

2013-06-19

... heparin. The condition leads to formation of abnormal blood clots and concomitant complications associated... antibody formation although these smaller chain length heparins are much less likely to lead to clinical... components of heparin that lead to the pathogenesis of HIT is the lack of pure component heparin standards...

Integrating Individual Learning Processes and Organizational Knowledge Formation: Foundational Determinants for Organizational Performance

ERIC Educational Resources Information Center

Song, Ji Hoon; Chermack, Thomas J.; Kim, Hong Min

2008-01-01

This research examined the link between learning processes and knowledge formation through an integrated literature review from both academic and practical viewpoints. Individuals' learning processes and organizational knowledge creation were reviewed by means of theoretical and integrative analysis based on a lack of empirical research on the…

"Learning Landscapes": A Form of Formative Assessment Supporting Assessment without Levels

ERIC Educational Resources Information Center

Mathews, Brian

2017-01-01

"Learning Landscapes" are assessment tools that can be used formatively to map progress in specific skills in the classroom and can contribute to learning without levels. "Learning Landscapes" can help both teachers and students recognise specific aspects of behaviour linked to a specific skill that provide evidence of their…

Formative Feedback Systems and the New Instructional Leadership

ERIC Educational Resources Information Center

Halverson, Richard; Prichett, Reid B.; Watson, Jeffrey G.

2007-01-01

Formative feedback systems live at the heart of systemic school improvement efforts. Without accurate and timely information on the results of intended interventions, school leaders and teachers fly blind in their efforts to link what they expect to what actually happens in their schools. This paper draws on the results of a 5-year National…

Skill Mastery and the Formation of Graduate Identity in Bachelor Graduates: Evidence from Australia

ERIC Educational Resources Information Center

Jackson, Denise

2016-01-01

Mastery of certain generic skills and the successful formation of pre-professional identity are widely considered to influence graduate work-readiness and job attainment. Given their links with enhanced productivity, performance and innovation, skill development and graduate identity appear critical amidst ongoing global stagnation in advanced…

Influence of curli expression on biofilm formation and attachment to plant surface by shiga toxigenic E. coli

USDA-ARS?s Scientific Manuscript database

Shiga-toxigenic Escherichia coli O157:H7 (STEC) outbreaks have been linked to consumption of fresh produce. Bacteria extracellular appendages, such as curli fibers and cellulose may play critical role in STEC biofilm formation and adherence to plant surface. We determined cellulose and curli product...

Methyl (4-bromo-benzene-sulfonamido)acetate.

PubMed

Arshad, Muhammad Nadeem; Tahir, M Nawaz; Khan, Islam Ullah; Ahmad, Ejaz; Shafiq, Muhammad

2008-11-20

The title compound, C(9)H(10)BrNO(4)S, is an inter-mediate for the formation of benzothia-zines. In the crystal structure, inter-molecular N-H⋯O hydrogen bonds link the mol-ecules, forming R(2) (2)(10) ring motifs, which are linked into a two-dimensional polymeric sheet through inter-molecular C-H⋯O hydrogen bonds.

Multiscale Modeling for Linking Growth, Microstructure, and Properties of Inorganic Microporous Films

NASA Technical Reports Server (NTRS)

Vlachos, Dion G.

2002-01-01

The focus of this presentation is on multiscale modeling in order to link processing, microstructure, and properties of materials. Overview of problems we study includes: Growth mechanisms in chemical and physical vapor epitaxy; thin films of zeolites for separation and sensing; thin Pd films for hydrogen separation and pattern formation by self-regulation routes.

Transmission performance of a wavelength and NRZ-to-RZ format conversion with pulsewidth tunability by combination of SOA- and fiber-based switches.

PubMed

Tan, Hung Nguyen; Matsuura, Motoharu; Kishi, Naoto

2008-11-10

An all-optical signal processing scheme coupling wavelength conversion and NRZ-to-RZ data format conversion with pulsewidth tunability into one by combination of SOA- and fiber-based switches, is experimentally demonstrated, and its transmission performance is investigated. An 1558 nm NRZ data signal is converted to RZ data format at 1546 nm with widely tunable pulsewidth from 20 % to 80 % duty cycle at the bit-rate of 10 Gb/s. The investigation on transmission performance of the converted RZ signals at each different pulsewidth is carried out over various standard single-mode fiber (SSMF) links up to 65 km long without dispersion compensation. The results clarify a significant improvement on transmission performance of converted signal in comparison with the conventional NRZ signal through tunable pulsewidth management and show the existence of an optimal pulsewidth for the RZ data format at each transmission distance with particular cumulative dispersion. The optimal pulsewidths of the converted RZ signal and its corresponding power penalties against the NRZ signal are also investigated in different SSMF links.

Aquifer configuration and geostructural links control the groundwater quality in thin-bedded carbonate-siliciclastic alternations of the Hainich CZE, central Germany

NASA Astrophysics Data System (ADS)

Kohlhepp, Bernd; Lehmann, Robert; Seeber, Paul; Küsel, Kirsten; Trumbore, Susan E.; Totsche, Kai U.

2017-12-01

The quality of near-surface groundwater reservoirs is controlled, but also threatened, by manifold surface-subsurface interactions. Vulnerability studies typically evaluate the variable interplay of surface factors (land management, infiltration patterns) and subsurface factors (hydrostratigraphy, flow properties) in a thorough way, but disregard the resulting groundwater quality. Conversely, hydrogeochemical case studies that address the chemical evolution of groundwater often lack a comprehensive analysis of the structural buildup. In this study, we aim to reconstruct the actual spatial groundwater quality pattern from a synoptic analysis of the hydrostratigraphy, lithostratigraphy, pedology and land use in the Hainich Critical Zone Exploratory (Hainich CZE). This CZE represents a widely distributed yet scarcely described setting of thin-bedded mixed carbonate-siliciclastic strata in hillslope terrains. At the eastern Hainich low-mountain hillslope, bedrock is mainly formed by alternated marine sedimentary rocks of the Upper Muschelkalk (Middle Triassic) that partly host productive groundwater resources. Spatial patterns of the groundwater quality of a 5.4 km long well transect are derived by principal component analysis and hierarchical cluster analysis. Aquifer stratigraphy and geostructural links were deduced from lithological drill core analysis, mineralogical analysis, geophysical borehole logs and mapping data. Maps of preferential recharge zones and recharge potential were deduced from digital (soil) mapping, soil survey data and field measurements of soil hydraulic conductivities (Ks). By attributing spatially variable surface and subsurface conditions, we were able to reconstruct groundwater quality clusters that reflect the type of land management in their preferential recharge areas, aquifer hydraulic conditions and cross-formational exchange via caprock sinkholes or ascending flow. Generally, the aquifer configuration (spatial arrangement of strata, valley incision/outcrops) and related geostructural links (enhanced recharge areas, karst phenomena) control the role of surface factors (input quality and locations) vs. subsurface factors (water-rock interaction, cross-formational flow) for groundwater quality in the multi-layered aquifer system. Our investigation reveals general properties of alternating sequences in hillslope terrains that are prone to forming multi-layered aquifer systems. This synoptic analysis is fundamental and indispensable for a mechanistic understanding of ecological functioning, sustainable resource management and protection.

Formation of target-specific binding sites in enzymes: solid-phase molecular imprinting of HRP

NASA Astrophysics Data System (ADS)

Czulak, J.; Guerreiro, A.; Metran, K.; Canfarotta, F.; Goddard, A.; Cowan, R. H.; Trochimczuk, A. W.; Piletsky, S.

2016-05-01

Here we introduce a new concept for synthesising molecularly imprinted nanoparticles by using proteins as macro-functional monomers. For a proof-of-concept, a model enzyme (HRP) was cross-linked using glutaraldehyde in the presence of glass beads (solid-phase) bearing immobilized templates such as vancomycin and ampicillin. The cross-linking process links together proteins and protein chains, which in the presence of templates leads to the formation of permanent target-specific recognition sites without adverse effects on the enzymatic activity. Unlike complex protein engineering approaches commonly employed to generate affinity proteins, the method proposed can be used to produce protein-based ligands in a short time period using native protein molecules. These affinity materials are potentially useful tools especially for assays since they combine the catalytic properties of enzymes (for signaling) and molecular recognition properties of antibodies. We demonstrate this concept in an ELISA-format assay where HRP imprinted with vancomycin and ampicillin replaced traditional enzyme-antibody conjugates for selective detection of templates at micromolar concentrations. This approach can potentially provide a fast alternative to raising antibodies for targets that do not require high assay sensitivities; it can also find uses as a biochemical research tool, as a possible replacement for immunoperoxidase-conjugates.Here we introduce a new concept for synthesising molecularly imprinted nanoparticles by using proteins as macro-functional monomers. For a proof-of-concept, a model enzyme (HRP) was cross-linked using glutaraldehyde in the presence of glass beads (solid-phase) bearing immobilized templates such as vancomycin and ampicillin. The cross-linking process links together proteins and protein chains, which in the presence of templates leads to the formation of permanent target-specific recognition sites without adverse effects on the enzymatic activity. Unlike complex protein engineering approaches commonly employed to generate affinity proteins, the method proposed can be used to produce protein-based ligands in a short time period using native protein molecules. These affinity materials are potentially useful tools especially for assays since they combine the catalytic properties of enzymes (for signaling) and molecular recognition properties of antibodies. We demonstrate this concept in an ELISA-format assay where HRP imprinted with vancomycin and ampicillin replaced traditional enzyme-antibody conjugates for selective detection of templates at micromolar concentrations. This approach can potentially provide a fast alternative to raising antibodies for targets that do not require high assay sensitivities; it can also find uses as a biochemical research tool, as a possible replacement for immunoperoxidase-conjugates. Electronic supplementary information (ESI) available: Additional circular dichroism data and nanoparticle tracking analysis trace. See DOI: 10.1039/c6nr02009g

How to use the WWW to distribute STI

NASA Technical Reports Server (NTRS)

Roper, Donna G.

1994-01-01

This presentation explains how to use the World Wide Web (WWW) to distribute scientific and technical information as hypermedia. WWW clients and servers use the HyperText Transfer Protocol (HTTP) to transfer documents containing links to other text, graphics, video, and sound. The standard language for these documents is the HyperText MarkUp Language (HTML). These are simply text files with formatting codes that contain layout information and hyperlinks. HTML documents can be created with any text editor or with one of the publicly available HTML editors or convertors. HTML can also include links to available image formats. This presentation is available online. The URL is http://sti.larc.nasa. (followed by) gov/demos/workshop/introtext.html.

Linked supramolecular building blocks for enhanced cluster formation

DOE PAGES

McLellan, Ross; Palacios, Maria A.; Beavers, Christine M.; ...

2015-01-09

Methylene-bridged calix[4]arenes have emerged as extremely versatile ligand supports in the formation of new polymetallic clusters possessing fascinating magnetic properties. Metal ion binding rules established for this building block allow one to partially rationalise the complex assembly process. The ability to covalently link calix[4]arenes at the methylene bridge provides significantly improved control over the introduction of different metal centres to resulting cluster motifs. Clusters assembled from bis-calix[4]arenes and transition metal ions or 3d-4f combinations display characteristic features of the analogous calix[4]arene supported clusters, thereby demonstrating an enhanced and rational approach towards the targeted synthesis of complex and challenging structures.

system aspects of optical LEO-to-ground links

NASA Astrophysics Data System (ADS)

Giggenbach, D.; Shrestha, A.; Fuchs, C.; Schmidt, C.; Moll, F.

2017-09-01

Optical Direct-to-Ground data links for earth-observation satellites will offer channel rates of several Gbps, together with low transmit powers and small terminal mass and also rather small ground receiver antennas. The avoidance of any signal spectrum limitation issues might be the most important advantage versus classical RF-technology. The effects of optical atmospheric signal attenuation, and the fast signal fluctuations induced by atmospheric index-of-refraction turbulence and sporadic miss-pointing-fading, require the use of adaptive signal formats together with fading mitigation techniques. We describe the typical downlink scenario, introduce the four different modes of data rate variation, and evaluate different methods of rate-adaptive modulation formats and repetition coding techniques.

Field test results--a new logging tool for formation density and lithology measurements

DOE Office of Scientific and Technical Information (OSTI.GOV)

Borai, A.M.; Muhsin, M.A.

1983-03-01

The formation porosity can be determined from borehole density measurements if the density of the rock is known. Generally, this is determined from the lithology. The Litho-Density Tool, LDT, provides an improved measurement of the formation density and a new measurement of lithology. Field tests of LDT proved that the tool could be run alone in a wide range of formations to provide porosity values comparable to those obtained by running a density log combined with a neutron log.

Free space optical communications system performance under atmospheric scattering and turbulence for 850 and 1550  nm operation.

PubMed

El-Wakeel, Amr S; Mohammed, Nazmi A; Aly, Moustafa H

2016-09-10

In this work, a free space optical communication (FSO) link is proposed and utilized to explore and evaluate the FSO link performance under the joint occurrence of the atmospheric scattering and turbulence phenomena for 850 and 1550 nm operation. Diffraction and nondiffraction-limited systems are presented and evaluated for both wavelengths' operation, considering far-field conditions under different link distances. Bit error rate, pointing error angles, beam divergence angles, and link distance are the main performance indicators that are used to evaluate and compare the link performance under different system configurations and atmospheric phenomena combinations. A detailed study is performed to provide the merits of this work. For both far-field diffraction-limited and nondiffraction-limited systems, it is concluded that 1550 nm system operation is better than 850 nm for the whole presented joint occurrences of atmospheric scattering and turbulence.

Numerical analysis of bubble-cluster formation in an ultrasonic field

NASA Astrophysics Data System (ADS)

Kim, Donghyun; Son, Gihun

2016-11-01

Bubble-cluster formation in an ultrasonic field is investigated numerically solving the conservation equations of mass, momentum and energy. The liquid-gas interface is calculated using the volume-of-fluid method with variable gas density to consider the bubble compressibility. The effect of liquid-gas phase change is also included as the interface source terms of the mass and energy equations. The numerical approach is tested through the simulation of the expansion and contraction motion of a compressed bubble adjacent to a wall. When the bubble is placed in an ultrasonic field, it oscillates radially and then collapses violently. Numerical simulation is also performed for bubble-cluster formation induced by an ultrasonic generator, where the generated bubbles are merged into a macrostructure along the acoustic flow field. The effects of ultrasonic power and frequency, liquid properties and pool temperature on the bubble-cluster formation are investigated. This work was supported by the Korea Institute of Energy Research.

DOES MAGNETIC-FIELD-ROTATION MISALIGNMENT SOLVE THE MAGNETIC BRAKING CATASTROPHE IN PROTOSTELLAR DISK FORMATION?

DOE Office of Scientific and Technical Information (OSTI.GOV)

Li Zhiyun; Krasnopolsky, Ruben; Shang, Hsien

2013-09-01

Stars form in dense cores of molecular clouds that are observed to be significantly magnetized. In the simplest case of a laminar (non-turbulent) core with the magnetic field aligned with the rotation axis, both analytic considerations and numerical simulations have shown that the formation of a large, 10{sup 2} AU scale, rotationally supported protostellar disk is suppressed by magnetic braking in the ideal MHD limit for a realistic level of core magnetization. This theoretical difficulty in forming protostellar disks is termed the ''magnetic braking catastrophe''. A possible resolution to this problem, proposed by Hennebelle and Ciardi and Joos et al.,more » is that misalignment between the magnetic field and rotation axis may weaken the magnetic braking enough to enable disk formation. We evaluate this possibility quantitatively through numerical simulations. We confirm the basic result of Joos et al. that the misalignment is indeed conducive to disk formation. In relatively weakly magnetized cores with dimensionless mass-to-flux ratio {approx}> 4, it enabled the formation of rotationally supported disks that would otherwise be suppressed if the magnetic field and rotation axis are aligned. For more strongly magnetized cores, disk formation remains suppressed, however, even for the maximum tilt angle of 90 Degree-Sign . If dense cores are as strongly magnetized as indicated by OH Zeeman observations (with a mean dimensionless mass-to-flux ratio {approx}2), it would be difficult for the misalignment alone to enable disk formation in the majority of them. We conclude that, while beneficial to disk formation, especially for the relatively weak field case, misalignment does not completely solve the problem of catastrophic magnetic braking in general.« less

Current-sheet formation in two-dimensional coronal fields

NASA Astrophysics Data System (ADS)

Billinghurst, M. N.; Craig, I. J. D.; Sneyd, A. D.

1993-11-01

The formation of current sheets by shearing motions in line-tied twin-lobed fields is examined. A general analytic argument shows that current sheets form along the fieldline bounding the two lobes in the case of both symmetric and asymmetric footpoint motions. In the case of strictly antisymmetric motions however no current sheets can form. These findings are reinforced by magnetic relaxation experiments involving sheared two-lobed fields represented by Clebsh variables. It is pointed out that, although current singularites cannot be expected to form when the line-tying assumption is relaxed, the two-lobed geometry is still consistent with the formation of highly localised currents - and strong resistive dissipation - along field lines close to the bounding fieldline.

Characterization of return flow pathways during flood irrigation

NASA Astrophysics Data System (ADS)

Claes, N.; Paige, G. B.; Parsekian, A.; Gordon, B. L.; Miller, S. N.

2015-12-01

With a decline in water resources available for private consumption and irrigation, the importance of sustainable water management practices is increasing. Local management decisions, based on models may affect the availability of water both locally and downstream, causing a ripple effect. It is therefore important that the models that these local management decisions are based on, accurately quantify local hydrological processes and the timescales at which they happen. We are focusing on return flow from flood irrigation, which can occur via different pathways back to the streams: overland flow, near-surface return flow and return flow via pathways below the vadose zone. The question addressed is how these different pathways each contribute to the total amount of return flow and the dynamics behind them. We used time-lapse ERT measurements in combination with an ensemble of ERT and seismic lines to answer this question via (1) capturing the process of gradual fragmentation of aqueous environments in the vadose zone during drying stages at field scale; (2) characterization of the formation of preferential flow paths from infiltrating wetting fronts during wetting cycles at field scale. The time-lapse ERT provides the possibility to capture the dynamic processes involved during the occurrence of finger flow or macro-pores when an intensive wetting period during flood irrigation occurs. It elucidates the dynamics of retention in the vadose zone during drying and wetting periods at field scale. This method provides thereby a link to upscale from laboratory experiments to field scale and watershed scale for finger flow and preferential flow paths and illustrates the hysteresis behavior at field scale.

Anelastic spherical dynamos with radially variable electrical conductivity

NASA Astrophysics Data System (ADS)

Dietrich, W.; Jones, C. A.

2018-05-01

A series of numerical simulations of the dynamo process operating inside gas giant planets has been performed. We use an anelastic, fully nonlinear, three-dimensional, benchmarked MHD code to evolve the flow, entropy and magnetic field. Our models take into account the varying electrical conductivity, high in the ionised metallic hydrogen region, low in the molecular outer region. Our suite of electrical conductivity profiles ranges from Jupiter-like, where the outer hydrodynamic region is quite thin, to Saturn-like, where there is a thick non-conducting shell. The rapid rotation leads to the formation of two distinct dynamical regimes which are separated by a magnetic tangent cylinder - mTC. Outside the mTC there are strong zonal flows, where Reynolds stress balances turbulent viscosity, but inside the mTC Lorentz force reduces the zonal flow. The dynamic interaction between both regions induces meridional circulation. We find a rich diversity of magnetic field morphologies. There are Jupiter-like steady dipolar fields, and a belt of quadrupolar dominated dynamos spanning the range of models between Jupiter-like and Saturn-like conductivity profiles. This diversity may be linked to the appearance of reversed sign helicity in the metallic regions of our dynamos. With Saturn-like conductivity profiles we find models with dipolar magnetic fields, whose axisymmetric components resemble those of Saturn, and which oscillate on a very long time-scale. However, the non-axisymmetric field components of our models are at least ten times larger than those of Saturn, possibly due to the absence of any stably stratified layer.

Assessment of collagen quality associated with non-enzymatic cross-links in human bone using Fourier-transform infrared imaging.

PubMed

Schmidt, F N; Zimmermann, E A; Campbell, G M; Sroga, G E; Püschel, K; Amling, M; Tang, S Y; Vashishth, D; Busse, B

2017-04-01

Aging and many disease conditions, most notably diabetes, are associated with the accumulation of non-enzymatic cross-links in the bone matrix. The non-enzymatic cross-links, also known as advanced glycation end products (AGEs), occur at the collagen tissue level, where they are associated with reduced plasticity and increased fracture risk. In this study, Fourier-transform infrared (FTIR) imaging was used to detect spectroscopic changes associated with the formation of non-enzymatic cross-links in human bone collagen. Here, the non-enzymatic cross-link profile was investigated in one cohort with an in vitro ribose treatment as well as another cohort with an in vivo bisphosphonate treatment. With FTIR imaging, the two-dimensional (2D) spatial distribution of collagen quality associated with non-enzymatic cross-links was measured through the area ratio of the 1678/1692cm -1 subbands within the amide I peak, termed the non-enzymatic crosslink-ratio (NE-xLR). The NE-xLR increased by 35% in the ribation treatment group in comparison to controls (p<0.005), with interstitial bone tissue being more susceptible to the formation of non-enzymatic cross-links. Ultra high-performance liquid chromatography, fluorescence microscopy, and fluorometric assay confirm a correlation between the non-enzymatic cross-link content and the NE-xLR ratio in the control and ribated groups. High resolution FTIR imaging of the 2D bone microstructure revealed enhanced accumulation of non-enzymatic cross-links in bone regions with higher tissue age (i.e., interstitial bone). This non-enzymatic cross-link ratio (NE-xLR) enables researchers to study not only the overall content of AGEs in the bone but also its spatial distribution, which varies with skeletal aging and diabetes mellitus and provides an additional measure of bone's propensity to fracture. Copyright © 2017 Elsevier Inc. All rights reserved.

KeySlinger and StarSlinger: Secure Key Exchange and Encrypted File Transfer on Smartphones

DTIC Science & Technology

2011-05-01

format data to exchange because contact information can be exported to V- Cards using existing APIs. For these reasons it was chosen as the medium to... Card format allows customization of this field. The service provider field serves to identify the app the key is for and the username field stores the...public key data. A sample V- Card field looks like Listing 1 below. IMPP;TextSecure

Interpreting Linked Psychomotor Performance Scores

ERIC Educational Resources Information Center

Looney, Marilyn A.

2013-01-01

Given that equating/linking applications are now appearing in kinesiology literature, this article provides an overview of the different types of linked test scores: equated, concordant, and predicted. It also addresses the different types of evidence required to determine whether the scores from two different field tests (measuring the same…

The role of Internal Solitary Waves on deep-water sedimentary processes: the case of up-slope migrating sediment waves off the Messina Strait

PubMed Central

Droghei, R.; Falcini, F.; Casalbore, D.; Martorelli, E.; Mosetti, R.; Sannino, G.; Santoleri, R.; Chiocci, F. L.

2016-01-01

Subaqueous, asymmetric sand waves are typically observed in marine channel/canyon systems, tidal environments, and continental slopes exposed to strong currents, where they are formed by current shear resulting from a dominant unidirectional flow. However, sand-wave fields may be readily observed in marine environments where no such current exists; the physical processes driving their formation are enigmatic or not well understood. We propose that internal solitary waves (ISWs) induced by tides can produce an effective, unidirectional boundary “current” that forms asymmetric sand waves. We test this idea by examining a sand-wave field off the Messina Strait, where we hypothesize that ISWs formed at the interface between intermediate and surface waters are refracted by topography. Hence, we argue that the deflected pattern (i.e., the depth-dependent orientation) of the sand-wave field is due to refraction of such ISWs. Combining field observations and numerical modelling, we show that ISWs can account for three key features: ISWs produce fluid velocities capable of mobilizing bottom sediments; the predicted refraction pattern resulting from the interaction of ISWs with bottom topography matches the observed deflection of the sand waves; and predicted migration rates of sand waves match empirical estimates. This work shows how ISWs may contribute to sculpting the structure of continental margins and it represents a promising link between the geological and oceanographic communities. PMID:27808239

Effects of resistivity and rotation on the linear plasma response to non-axisymmetric magnetic perturbations on DIII-D

DOE PAGES

Haskey, Shaun R.; Lanctot, Matthew J.; Liu, Y. Q.; ...

2015-01-05

Parameter scans show the strong dependence of the plasma response on the poloidal structure of the applied field highlighting the importance of being able to control this parameter using non-axisymmetric coil sets. An extensive examination of the linear single fluid plasma response to n = 3 magnetic perturbations in L-mode DIII-D lower single null plasmas is presented. The effects of plasma resistivity, toroidal rotation and applied field structure are calculated using the linear single fluid MHD code, MARS-F. Measures which separate the response into a pitch-resonant and resonant field amplification (RFA) component are used to demonstrate the extent to whichmore » resonant screening and RFA occurs. The ability to control the ratio of pitch-resonant fields to RFA by varying the phasing between upper and lower resonant magnetic perturbations coils sets is shown. The predicted magnetic probe outputs and displacement at the x-point are also calculated for comparison with experiments. Additionally, modelling of the linear plasma response using experimental toroidal rotation profiles and Spitzer like resistivity profiles are compared with results which provide experimental evidence of a direct link between the decay of the resonant screening response and the formation of a 3D boundary. As a result, good agreement is found during the initial application of the MP, however, later in the shot a sudden drop in the poloidal magnetic probe output occurs which is not captured in the linear single fluid modelling.« less

Bulk magnetic domain stability controls paleointensity fidelity

NASA Astrophysics Data System (ADS)

Paterson, Greig A.; Muxworthy, Adrian R.; Yamamoto, Yuhji; Pan, Yongxin

2017-12-01

Nonideal, nonsingle-domain magnetic grains are ubiquitous in rocks; however, they can have a detrimental impact on the fidelity of paleomagnetic records—in particular the determination of ancient magnetic field strength (paleointensity), a key means of understanding the evolution of the earliest geodynamo and the formation of the solar system. As a consequence, great effort has been expended to link rock magnetic behavior to paleointensity results, but with little quantitative success. Using the most comprehensive rock magnetic and paleointensity data compilations, we quantify a stability trend in hysteresis data that characterizes the bulk domain stability (BDS) of the magnetic carriers in a paleomagnetic specimen. This trend is evident in both geological and archeological materials that are typically used to obtain paleointensity data and is therefore pervasive throughout most paleomagnetic studies. Comparing this trend to paleointensity data from both laboratory and historical experiments reveals a quantitative relationship between BDS and paleointensity behavior. Specimens that have lower BDS values display higher curvature on the paleointensity analysis plot, which leads to more inaccurate results. In-field quantification of BDS therefore reflects low-field bulk remanence stability. Rapid hysteresis measurements can be used to provide a powerful quantitative method for preselecting paleointensity specimens and postanalyzing previous studies, further improving our ability to select high-fidelity recordings of ancient magnetic fields. BDS analyses will enhance our ability to understand the evolution of the geodynamo and can help in understanding many fundamental Earth and planetary science questions that remain shrouded in controversy.

Bulk magnetic domain stability controls paleointensity fidelity

PubMed Central

Muxworthy, Adrian R.; Yamamoto, Yuhji; Pan, Yongxin

2017-01-01

Nonideal, nonsingle-domain magnetic grains are ubiquitous in rocks; however, they can have a detrimental impact on the fidelity of paleomagnetic records—in particular the determination of ancient magnetic field strength (paleointensity), a key means of understanding the evolution of the earliest geodynamo and the formation of the solar system. As a consequence, great effort has been expended to link rock magnetic behavior to paleointensity results, but with little quantitative success. Using the most comprehensive rock magnetic and paleointensity data compilations, we quantify a stability trend in hysteresis data that characterizes the bulk domain stability (BDS) of the magnetic carriers in a paleomagnetic specimen. This trend is evident in both geological and archeological materials that are typically used to obtain paleointensity data and is therefore pervasive throughout most paleomagnetic studies. Comparing this trend to paleointensity data from both laboratory and historical experiments reveals a quantitative relationship between BDS and paleointensity behavior. Specimens that have lower BDS values display higher curvature on the paleointensity analysis plot, which leads to more inaccurate results. In-field quantification of BDS therefore reflects low-field bulk remanence stability. Rapid hysteresis measurements can be used to provide a powerful quantitative method for preselecting paleointensity specimens and postanalyzing previous studies, further improving our ability to select high-fidelity recordings of ancient magnetic fields. BDS analyses will enhance our ability to understand the evolution of the geodynamo and can help in understanding many fundamental Earth and planetary science questions that remain shrouded in controversy. PMID:29187534

OIL—Output input language for data connectivity between geoscientific software applications

NASA Astrophysics Data System (ADS)

Amin Khan, Khalid; Akhter, Gulraiz; Ahmad, Zulfiqar

2010-05-01

Geoscientific computing has become so complex that no single software application can perform all the processing steps required to get the desired results. Thus for a given set of analyses, several specialized software applications are required, which must be interconnected for electronic flow of data. In this network of applications the outputs of one application become inputs of other applications. Each of these applications usually involve more than one data type and may have their own data formats, making them incompatible with other applications in terms of data connectivity. Consequently several data format conversion utilities are developed in-house to provide data connectivity between applications. Practically there is no end to this problem as each time a new application is added to the system, a set of new data conversion utilities need to be developed. This paper presents a flexible data format engine, programmable through a platform independent, interpreted language named; Output Input Language (OIL). Its unique architecture allows input and output formats to be defined independent of each other by two separate programs. Thus read and write for each format is coded only once and data connectivity link between two formats is established by a combination of their read and write programs. This results in fewer programs with no redundancy and maximum reuse, enabling rapid application development and easy maintenance of data connectivity links.

The interaction between the cognitive style of field dependence and visual presentations in color, monochrome, and line drawings

NASA Astrophysics Data System (ADS)

Myers, Robert Gardner

1997-12-01

The purpose of this study was to determine whether there is a correlation between the cognitive style of field dependence and the type of visual presentation format used in a computer-based tutorial (color; black and white: or line drawings) when subjects are asked to identify human tissue samples. Two hundred-four college students enrolled in human anatomy and physiology classes at Westmoreland County Community College participated. They were first administered the Group Embedded Figures Test (GEFT) and then were divided into three groups: field-independent (score, 15-18), field-neutral (score, 11-14), and field dependent (score, 0-10). Subjects were randomly assigned to one of the three treatment groups. Instruction was delivered by means of a computer-aided tutorial consisting of text and visuals of human tissue samples. The pretest and posttest consisted of 15 tissue samples, five from each treatment, that were imported into the HyperCardsp{TM} stack and were played using QuickTimesp{TM} movie extensions. A two-way analysis of covariance (ANCOVA) using pretest and posttest scores was used to investigate whether there is a relationship between field dependence and each of the three visual presentation formats. No significant interaction was found between individual subject's relative degree of field dependence and any of the different visual presentation formats used in the computer-aided tutorial module, F(4,194) = 1.78, p =.1335. There was a significant difference between the students' levels of field dependence in terms of their ability to identify human tissue samples, F(2,194) = 5.83, p =.0035. Field-independent subjects scored significantly higher (M = 10.59) on the posttest than subjects who were field-dependent (M = 9.04). There was also a significant difference among the various visual presentation formats, F(2,194) = 3.78, p =.0245. Subjects assigned to the group that received the color visual presentation format scored significantly higher (M = 10.38) on the posttest measure than did those assigned to the group that received the line drawing visual presentation format (8.99).

Increased neutrophil extracellular trap formation promotes thrombosis in myeloproliferative neoplasms.

PubMed

Wolach, Ofir; Sellar, Rob S; Martinod, Kimberly; Cherpokova, Deya; McConkey, Marie; Chappell, Ryan J; Silver, Alexander J; Adams, Dylan; Castellano, Cecilia A; Schneider, Rebekka K; Padera, Robert F; DeAngelo, Daniel J; Wadleigh, Martha; Steensma, David P; Galinsky, Ilene; Stone, Richard M; Genovese, Giulio; McCarroll, Steven A; Iliadou, Bozenna; Hultman, Christina; Neuberg, Donna; Mullally, Ann; Wagner, Denisa D; Ebert, Benjamin L

2018-04-11

Thrombosis is a major cause of morbidity and mortality in Philadelphia chromosome-negative myeloproliferative neoplasms (MPNs), clonal disorders of hematopoiesis characterized by activated Janus kinase (JAK)-signal transducer and activator of transcription (STAT) signaling. Neutrophil extracellular trap (NET) formation, a component of innate immunity, has been linked to thrombosis. We demonstrate that neutrophils from patients with MPNs are primed for NET formation, an effect blunted by pharmacological inhibition of JAK signaling. Mice with conditional knock-in of Jak2 V617F , the most common molecular driver of MPN, have an increased propensity for NET formation and thrombosis. Inhibition of JAK-STAT signaling with the clinically available JAK2 inhibitor ruxolitinib abrogated NET formation and reduced thrombosis in a deep vein stenosis murine model. We further show that expression of PAD4, a protein required for NET formation, is increased in JAK2 V617F -expressing neutrophils and that PAD4 is required for Jak2 V617F -driven NET formation and thrombosis in vivo. Finally, in a population study of more than 10,000 individuals without a known myeloid disorder, JAK2 V617F -positive clonal hematopoiesis was associated with an increased incidence of thrombosis. In aggregate, our results link JAK2 V617F expression to NET formation and thrombosis and suggest that JAK2 inhibition may reduce thrombosis in MPNs through cell-intrinsic effects on neutrophil function. Copyright © 2018 The Authors, some rights reserved; exclusive licensee American Association for the Advancement of Science. No claim to original U.S. Government Works.

On Iron Enrichment, Star Formation, and Type Ia Supernovae in Galaxy Clusters

NASA Technical Reports Server (NTRS)

Loewenstein, Michael

2006-01-01

The nature of star formation and Type Ia supernovae (SNIa) in galaxies in the field and in rich galaxy clusters are contrasted by juxtaposing the buildup of heavy metals in the universe inferred from observed star formation and supernovae rate histories with data on the evolution of Fe abundances in the intracluster medium (ICM). Models for the chemical evolution of Fe in these environments are constructed, subject to observational constraints, for this purpose. While models with a mean delay for SNIa of 3 Gyr and standard initial mass function (IMF) are fully consistent with observations in the field, cluster Fe enrichment immediately tracked a rapid, top-heavy phase of star formation - although transport of Fe into the ICM may have been more prolonged and star formation likely continued beyond redshift 1. The means of this prompt enrichment consisted of SNII yielding greater than or equal to 0.1 solar mass per explosion (if the SNIa rate normalization is scaled down from its value in the field according to the relative number of candidate progenitor stars in the 3 - 8 solar mass range) and/or SNIa with short delay times originating during the rapid star formation epoch. Star formation is greater than 3 times more efficient in rich clusters than in the field, mitigating the overcooling problem in numerical cluster simulations. Both the fraction of baryons cycled through stars, and the fraction of the total present-day stellar mass in the form of stellar remnants, are substantially greater in clusters than in the field.

Epigallocatechin Gallate-Modified Gelatin Sponges Treated by Vacuum Heating as a Novel Scaffold for Bone Tissue Engineering.

PubMed

Honda, Yoshitomo; Takeda, Yoshihiro; Li, Peiqi; Huang, Anqi; Sasayama, Satoshi; Hara, Eiki; Uemura, Naoya; Ueda, Mamoru; Hashimoto, Masanori; Arita, Kenji; Matsumoto, Naoyuki; Hashimoto, Yoshiya; Baba, Shunsuke; Tanaka, Tomonari

2018-04-11

Chemical modification of gelatin using epigallocatechin gallate (EGCG) promotes bone formation in vivo. However, further improvements are required to increase the mechanical strength and bone-forming ability of fabricated EGCG-modified gelatin sponges (EGCG-GS) for practical applications in regenerative therapy. In the present study, we investigated whether vacuum heating-induced dehydrothermal cross-linking of EGCG-GS enhances bone formation in critical-sized rat calvarial defects. The bone-forming ability of vacuum-heated EGCG-GS (vhEGCG-GS) and other sponges was evaluated by micro-computed tomography and histological staining. The degradation of sponges was assessed using protein assays, and cell morphology and proliferation were verified by scanning electron microscopy and immunostaining using osteoblastic UMR106 cells in vitro. Four weeks after the implantation of sponges, greater bone formation was detected for vhEGCG-GS than for EGCG-GS or vacuum-heated gelatin sponges (dehydrothermal cross-linked sponges without EGCG). In vitro experiments revealed that the relatively low degradability of vhEGCG-GS supports cell attachment, proliferation, and cell-cell communication on the matrix. These findings suggest that vacuum heating enhanced the bone forming ability of EGCG-GS, possibly via the dehydrothermal cross-linking of EGCG-GS, which provides a scaffold for cells, and by maintaining the pharmacological effect of EGCG.

Formation of target-specific binding sites in enzymes: solid-phase molecular imprinting of HRP.

PubMed

Czulak, J; Guerreiro, A; Metran, K; Canfarotta, F; Goddard, A; Cowan, R H; Trochimczuk, A W; Piletsky, S

2016-06-07

Here we introduce a new concept for synthesising molecularly imprinted nanoparticles by using proteins as macro-functional monomers. For a proof-of-concept, a model enzyme (HRP) was cross-linked using glutaraldehyde in the presence of glass beads (solid-phase) bearing immobilized templates such as vancomycin and ampicillin. The cross-linking process links together proteins and protein chains, which in the presence of templates leads to the formation of permanent target-specific recognition sites without adverse effects on the enzymatic activity. Unlike complex protein engineering approaches commonly employed to generate affinity proteins, the method proposed can be used to produce protein-based ligands in a short time period using native protein molecules. These affinity materials are potentially useful tools especially for assays since they combine the catalytic properties of enzymes (for signaling) and molecular recognition properties of antibodies. We demonstrate this concept in an ELISA-format assay where HRP imprinted with vancomycin and ampicillin replaced traditional enzyme-antibody conjugates for selective detection of templates at micromolar concentrations. This approach can potentially provide a fast alternative to raising antibodies for targets that do not require high assay sensitivities; it can also find uses as a biochemical research tool, as a possible replacement for immunoperoxidase-conjugates.

Rolling Deck to Repository (R2R): Big Data and Standard Services for the Fleet Community

NASA Astrophysics Data System (ADS)

Arko, R. A.; Carbotte, S. M.; Chandler, C. L.; Smith, S. R.; Stocks, K. I.

2014-12-01

The Rolling Deck to Repository (R2R; http://rvdata.us/) program curates underway environmental sensor data from the U.S. academic oceanographic research fleet, ensuring data sets are routinely and consistently documented, preserved in long-term archives, and disseminated to the science community. Currently 25 in-service vessels contribute 7 terabytes of data to R2R each year, acquired from a full suite of geophysical, oceanographic, meteorological, and navigational sensors on over 400 cruises worldwide. To accommodate this large volume and variety of data, R2R has developed highly efficient stewardship procedures. These include scripted "break out" of cruise data packages from each vessel based on standard filename and directory patterns; automated harvest of cruise metadata from the UNOLS Office via Web Services and from OpenXML-based forms submitted by vessel operators; scripted quality assessment routines that calculate statistical summaries and standard ratings for selected data types; adoption of community-standard controlled vocabularies for vessel codes, instrument types, etc, provided by the NERC Vocabulary Server, in lieu of maintaining custom local term lists; and a standard package structure based on the IETF BagIt format for delivering data to long-term archives. Documentation and standard post-field products, including quality-controlled shiptrack navigation data for every cruise, are published in multiple services and formats to satisfy a diverse range of clients. These include Catalog Service for Web (CSW), GeoRSS, and OAI-PMH discovery services via a GeoNetwork portal; OGC Web Map and Feature Services for GIS clients; a citable Digital Object Identifier (DOI) for each dataset; ISO 19115-2 standard geospatial metadata records suitable for submission to long-term archives as well as the POGO global catalog; and Linked Open Data resources with a SPARQL query endpoint for Semantic Web clients. R2R participates in initiatives such as the Ocean Data Interoperability Platform (ODIP) and the NSF EarthCube OceanLink project to promote community-standard formats, vocabularies, and services among ocean data providers.

Effect of digital scrambling on satellite communication links

NASA Technical Reports Server (NTRS)

Dessouky, K.

1985-01-01

Digital data scrambling has been considered for communication systems using NRZ symbol formats. The purpose is to increase the number of transitions in the data to improve the performance of the symbol synchronizer. This is accomplished without expanding the bandwidth but at the expense of increasing the data bit error rate (BER). Models for the scramblers/descramblers of practical interest are presented together with the appropriate link model. The effects of scrambling on the performance of coded and uncoded links are studied. The results are illustrated by application to the Tracking and Data Relay Satellite System (TDRSS) links. Conclusions regarding the usefulness of scrambling are also given.

Formation of high-field magnetic white dwarfs from common envelopes

PubMed Central

Nordhaus, Jason; Wellons, Sarah; Spiegel, David S.; Metzger, Brian D.; Blackman, Eric G.

2011-01-01

The origin of highly magnetized white dwarfs has remained a mystery since their initial discovery. Recent observations indicate that the formation of high-field magnetic white dwarfs is intimately related to strong binary interactions during post-main-sequence phases of stellar evolution. If a low-mass companion, such as a planet, brown dwarf, or low-mass star, is engulfed by a post-main-sequence giant, gravitational torques in the envelope of the giant lead to a reduction of the companion’s orbit. Sufficiently low-mass companions in-spiral until they are shredded by the strong gravitational tides near the white dwarf core. Subsequent formation of a super-Eddington accretion disk from the disrupted companion inside a common envelope can dramatically amplify magnetic fields via a dynamo. Here, we show that these disk-generated fields are sufficiently strong to explain the observed range of magnetic field strengths for isolated, high-field magnetic white dwarfs. A higher-mass binary analogue may also contribute to the origin of magnetar fields. PMID:21300910

Geohydrology and simulation of ground-water flow near Los Alamos, north-central New Mexico

USGS Publications Warehouse

Frenzel, P.F.

1995-01-01

An existing model was modified in recognition of new geohydrologic interpretations and adjusted to simulate hydrographs in well fields in the Los Alamos area. Hydraulic-head drawdowns at the Buckman well field resulting from two projected ground-water-withdrawal alternatives were estimated with the modified model. The Chaquehui formation (informal usage) is the main new feature of recent hydrologic interpretations for the Los Alamos area. The Chaquehui occupies a 'channel' that was eroded or faulted into the Tesuque Formation, and the Chaquehui is more permeable than the Tesuque. The Chaquehui is a major producing zone in the Pajarito Mesa well field and to a lesser extent in the Guaje well field. Model modification included splitting the four layers of the McAda-Wasiolek model (McAda, D.P., and Wasiolek, Maryann, 1988, Simulation of the regional geohydrology of the Tesuque aquifer system near Santa Fe, New Mexico: U.S. Geological Survey Water- Resources Investigations Report 87-4056, 71 p.) into eight layers to better simulate vertical ground-water movement. Other model modifications were limited as much as possible to the area of interest near Los Alamos and consisted mainly of adjusting hydraulic-conductivity values representing the Tesuque Formation, Chaquehui formation (informal usage), and Puye Formation, and adjusting simulated recharge along the Pajarito Fault Zone west of Los Alamos. Adjustments were based mainly on simulation of fluctuations in measured hydraulic heads near Los Alamos. Two possible alternative plans for replacing Guaje well field production were suggested by Los Alamos National Laboratory. In the first plan (Guaje alternative), the Guaje field would be renewed with four new wells replacing the existing production wells in the Guaje field. In the second plan (Pajarito-Otowi alternative), the Guaje well field would be retired and its former production would be made up by additional withdrawals from the Pajarito Mesa and Otowi well fields. A projection for each of these alternatives was made through 2012 using the new eight- layer model. In the Guaje field, projected hydraulic heads at the end of 2012 were as much as 50 feet lower with the Guaje alternative; in the Pajarito Mesa field, hydraulic heads were as much as 12 feet higher with the Guaje alternative. At the western end of the Los Alamos well field, projected hydraulic heads were about 20 feet higher with the Guaje alternative; at the eastern end of the Los Alamos field, the difference between alternatives was much less. At the Buckman field, projected hydraulic heads were about 2 feet higher with the Guaje alternative because the Buckman field is closer to the Pajarito Mesa field than to the Guaje field. Ways of improving the understanding of the flow system include developing a more accurate representation of the structure and extent of the Tesuque Formation, Chaquehui formation, and Puye Formation of the Santa Fe Group and obtaining more detailed geologic and hydrologic data for the Chaquehui and Puye. Data that describe water chemistry, hydraulic head, and degree of saturation would be valuable for determining the location and quantity of recharge on the Pajarito Plateau, especially along the west side of the Plateau and in canyon bottoms. Chloride concentrations in soil at the top of the Bandelier Tuff could be used to verify the concept that evapotranspiration accounts for nearly all precipitation over a large area of the plateau.

Imaging of current density distributions with a Nb weak-link scanning nano-SQUID microscope

PubMed Central

Shibata, Yusuke; Nomura, Shintaro; Kashiwaya, Hiromi; Kashiwaya, Satoshi; Ishiguro, Ryosuke; Takayanagi, Hideaki

2015-01-01

Superconducting quantum interference devices (SQUIDs) are accepted as one of the highest magnetic field sensitive probes. There are increasing demands to image local magnetic fields to explore spin properties and current density distributions in a two-dimensional layer of semiconductors or superconductors. Nano-SQUIDs have recently attracting much interest for high spatial resolution measurements in nanometer-scale samples. Whereas weak-link Dayem Josephson junction nano-SQUIDs are suitable to miniaturization, hysteresis in current-voltage (I-V) characteristics that is often observed in Dayem Josephson junction is not desirable for a scanning microscope. Here we report on our development of a weak-link nano-SQUIDs scanning microscope with small hysteresis in I-V curve and on reconstructions of two-dimensional current density vector in two-dimensional electron gas from measured magnetic field. PMID:26459874

The scheme of LLSST based on inter-satellite link for planet gravity field measurement in deep-space mission

NASA Astrophysics Data System (ADS)

Yang, Yikang; Li, Xue; Liu, Lei

2009-12-01

Gravity field measurement for the interested planets and their moos in solar system, such as Luna and Mars, is one important task in the next step of deep-space mission. In this paper, Similar to GRACE mission, LLSST and DOWR technology of common-orbit master-slave satellites around task planet is inherited in this scheme. Furthermore, by intersatellite 2-way UQPSK-DSSS link, time synchronization and data processing are implemented autonomously by masterslave satellites instead of GPS and ground facilities supporting system. Conclusion is derived that the ISL DOWR based on 2-way incoherent time synchronization has the same precise level to GRACE DOWR based on GPS time synchronization. Moreover, because of inter-satellite link, the proposed scheme is rather autonomous for gravity field measurement of the task planet in deep-space mission.

Imaging of current density distributions with a Nb weak-link scanning nano-SQUID microscope

NASA Astrophysics Data System (ADS)

Shibata, Yusuke; Nomura, Shintaro; Kashiwaya, Hiromi; Kashiwaya, Satoshi; Ishiguro, Ryosuke; Takayanagi, Hideaki

2015-10-01

Superconducting quantum interference devices (SQUIDs) are accepted as one of the highest magnetic field sensitive probes. There are increasing demands to image local magnetic fields to explore spin properties and current density distributions in a two-dimensional layer of semiconductors or superconductors. Nano-SQUIDs have recently attracting much interest for high spatial resolution measurements in nanometer-scale samples. Whereas weak-link Dayem Josephson junction nano-SQUIDs are suitable to miniaturization, hysteresis in current-voltage (I-V) characteristics that is often observed in Dayem Josephson junction is not desirable for a scanning microscope. Here we report on our development of a weak-link nano-SQUIDs scanning microscope with small hysteresis in I-V curve and on reconstructions of two-dimensional current density vector in two-dimensional electron gas from measured magnetic field.

Lifetime of the solar nebula constrained by meteorite paleomagnetism

DOE Office of Scientific and Technical Information (OSTI.GOV)

Wang, Huapei; Weiss, Benjamin P.; Bai, Xue-Ning

We present that a key stage in planet formation is the evolution of a gaseous and magnetized solar nebula. However, the lifetime of the nebular magnetic field and nebula are poorly constrained. We present paleomagnetic analyses of volcanic angrites demonstrating that they formed in a near-zero magnetic field (<0.6 microtesla) at 4563.5 ± 0.1 million years ago, ~3.8 million years after solar system formation. This indicates that the solar nebula field, and likely the nebular gas, had dispersed by this time. This sets the time scale for formation of the gas giants and planet migration. Furthermore, it supports formation ofmore » chondrules after 4563.5 million years ago by non-nebular processes like planetesimal collisions. In conclusion, the core dynamo on the angrite parent body did not initiate until about 4 to 11 million years after solar system formation.« less

Lifetime of the solar nebula constrained by meteorite paleomagnetism.

PubMed

Wang, Huapei; Weiss, Benjamin P; Bai, Xue-Ning; Downey, Brynna G; Wang, Jun; Wang, Jiajun; Suavet, Clément; Fu, Roger R; Zucolotto, Maria E

2017-02-10

A key stage in planet formation is the evolution of a gaseous and magnetized solar nebula. However, the lifetime of the nebular magnetic field and nebula are poorly constrained. We present paleomagnetic analyses of volcanic angrites demonstrating that they formed in a near-zero magnetic field (<0.6 microtesla) at 4563.5 ± 0.1 million years ago, ~3.8 million years after solar system formation. This indicates that the solar nebula field, and likely the nebular gas, had dispersed by this time. This sets the time scale for formation of the gas giants and planet migration. Furthermore, it supports formation of chondrules after 4563.5 million years ago by non-nebular processes like planetesimal collisions. The core dynamo on the angrite parent body did not initiate until about 4 to 11 million years after solar system formation. Copyright © 2017, American Association for the Advancement of Science.

Lifetime of the solar nebula constrained by meteorite paleomagnetism

DOE PAGES

Wang, Huapei; Weiss, Benjamin P.; Bai, Xue-Ning; ...

2017-02-10

We present that a key stage in planet formation is the evolution of a gaseous and magnetized solar nebula. However, the lifetime of the nebular magnetic field and nebula are poorly constrained. We present paleomagnetic analyses of volcanic angrites demonstrating that they formed in a near-zero magnetic field (<0.6 microtesla) at 4563.5 ± 0.1 million years ago, ~3.8 million years after solar system formation. This indicates that the solar nebula field, and likely the nebular gas, had dispersed by this time. This sets the time scale for formation of the gas giants and planet migration. Furthermore, it supports formation ofmore » chondrules after 4563.5 million years ago by non-nebular processes like planetesimal collisions. In conclusion, the core dynamo on the angrite parent body did not initiate until about 4 to 11 million years after solar system formation.« less

Chlorhexidine digluconate effects on planktonic growth and biofilm formation in some field isolates of animal bacterial pathogens.

PubMed

Ebrahimi, Azizollah; Hemati, Majid; Habibian Dehkordi, Saeed; Bahadoran, Shahab; Khoshnood, Sheida; Khubani, Shahin; Dokht Faraj, Mahdi; Hakimi Alni, Reza

2014-05-01

To study chlorhexidine digluconate disinfectant effects on planktonic growth and biofilm formation in some bacterial field isolates from animals. The current study investigated chlorhexidine digluconate effects on planktonic growth and biofilm formation in some field isolates of veterinary bacterial pathogens. Forty clinical isolates of Escherichia coli, Salmonella serotypes, Staphylococcus. aureus and Streptococcus agalactiae (10 isolates for each) were examined for chlorhexidine digluconate effects on biofilm formation and planktonic growth using microtiter plates. In all of the examined strains in the presence of chlorhexidine digluconate, biofilm development and planktonic growth were affected at the same concentrations of the disinfectant. Chlorhexidine digluconate inhibited the planktonic growth of different bacterial species at sub-MICs. But they were able to induce biofilm development of the E. coli, Salmonella spp., S. aureus and Str. agalactiae strains. Bacterial resistance against chlorhexidine is increasing. Sub-MIC doses of chlorhexidine digluconate can stimulate the formation of biofilm strains.

The morphology and evolution of the Stromboli 2002-2003 lava flow field--An example of a basaltic flow field emplaced on a steep slope

USGS Publications Warehouse

Lodato, Luigi; Harris, A.; Spampinato, L.; Calvari, Sonia; Dehn, J.; Patrick, M.

2007-01-01

The use of a hand-held thermal camera during the 2002–2003 Stromboli effusive eruption proved essential in tracking the development of flow field structures and in measuring related eruption parameters, such as the number of active vents and flow lengths. The steep underlying slope on which the flow field was emplaced resulted in a characteristic flow field morphology. This comprised a proximal shield, where flow stacking and inflation caused piling up of lava on the relatively flat ground of the vent zone, that fed a medial–distal lava flow field. This zone was characterized by the formation of lava tubes and tumuli forming a complex network of tumuli and flows linked by tubes. Most of the flow field was emplaced on extremely steep slopes and this had two effects. It caused flows to slide, as well as flow, and flow fronts to fail frequently, persistent flow front crumbling resulted in the production of an extensive debris field. Channel-fed flows were also characterized by development of excavated debris levees in this zone (Calvari et al. 2005). Collapse of lava flow fronts and inflation of the upper proximal lava shield made volume calculation very difficult. Comparison of the final field volume with that expecta by integrating the lava effusion rates through time suggests a loss of ~70% erupted lava by flow front crumbling and accumulation as debris flows below sea level. Derived relationships between effusion rate, flow length, and number of active vents showed systematic and correlated variations with time where spreading of volume between numerous flows caused an otherwise good correlation between effusion rate, flow length to break down. Observations collected during this eruption are useful in helping to understand lava flow processes on steep slopes, as well as in interpreting old lava–debris sequences found in other steep-sided volcanoes subject to effusive activity.

Edible oil structuring: an overview and recent updates.

PubMed

Patel, Ashok R; Dewettinck, Koen

2016-01-01

In recent years, research dealing with edible oil structuring has received considerable interest from scientific community working in the area of food formulation. Much of this interest is linked to the possibility of using structured oil in development of newer product formats with improved nutritional profile (trans fat-free, low in saturated fats and high in mono and/or poly unsaturated fatty acids). In addition to the obvious industrial need of finding the alternative formulation approach, the interesting properties of structured systems (particularly, oleogels) also makes them a fascinating subject for fundamental studies. In this paper, we attempt to give a comprehensive and concise overview of the field of oil structuring with special emphasis on the updates from recent years. Specifically, several categories of food-grade oleogelators and their potential food applications are summarized with typical examples along with a discussion on the general principles and unresolved challenges related to this emerging area.

Creation and manipulation of topological states in chiral nematic microspheres

PubMed Central

Orlova, Tetiana; Aßhoff, Sarah Jane; Yamaguchi, Tadatsugu; Katsonis, Nathalie; Brasselet, Etienne

2015-01-01

Topology is a universal concept that is encountered in daily life and is known to determine many static and dynamical properties of matter. Taming and controlling the topology of materials therefore constitutes a contemporary interdisciplinary challenge. Building on the controllable spatial properties of soft matter appears as a relevant strategy to address the challenge, in particular, because it may lead to paradigmatic model systems that allow checking theories experimentally. Here we report experimentally on a wealth of complex free-standing metastable topological architectures at the micron scale, in frustrated chiral nematic droplets. These results support recent works predicting the formation of free-standing knotted and linked disclination structures in confined chiral nematic fluids. We also demonstrate that various kinds of external fields (thermal, electrical and optical) can be used to achieve topological remote control. All this may foster the development of new devices based on topologically structured soft media. PMID:26145716

In-situ Indentation and Correlated Precession Electron Diffraction Analysis of a Polycrystalline Cu Thin Film

NASA Astrophysics Data System (ADS)

Guo, Qianying; Thompson, Gregory B.

2018-04-01

In-situ TEM nanoindentation of a polycrystalline Cu film was cross-correlated with precession electron diffraction (PED) to quantify the microstructural evolution. The use of PED is shown to clearly reveal features, such as grain size, that are easily masked by diffraction contrast created by the deformation. Using PED, the accompanying grain refinement and change in texture as well as the preservation of specific grain boundary structures, including a ∑3 boundary, under the indent impression were quantified. The nucleation of dislocations, evident in low-angle grain boundary formations, was also observed under the indent. PED quantification of texture gradients created by the indentation process linked well to bend contours observed in the bright-field images. Finally, PED enabled generating a local orientation spread map that gave an approximate estimation of the spatial distribution of strain created by the indentation impression.

Micro-optical foundry: 3D lithography by freezing liquid instabilities at nanoscale

NASA Astrophysics Data System (ADS)

Grilli, S.; Coppola, S.; Vespini, V.; Merola, F.; Finizio, A.; Ferraro, P.

2012-06-01

The pyroelectric functionality of a Lithium Niobate (LN) substrate is used for non-contact manipulation of polymeric material. In this work we introduced a novel approach for fabricating a wide variety of soft solid-like microstructures, thus leading to a new concept in 3D lithography. A relatively easy to accomplish technique has been demonstrated for curing different transient stages of polymer fluids by rapid cross-linking of PDMS. The method is twofold innovative thanks to the electrode-less configuration and to the rapid formation of a wide variety of 3D solid-like structures by exploiting polymer instabilities. This new and unique technique is named "pyro-electrohydrodynamic (PEHD) lithography", meaning the generation of structures by using forces produced by electric fields generated by the pyroelectric effect. The fabrication of polymer wires, needles, pillars, cones, or microspheres is reported, and practical proofs of their use in photonics are presented.

Cigarette smoking and the pathogenesis of systemic lupus erythematosus.

PubMed

Speyer, Cameron B; Costenbader, Karen H

2018-06-01

Systemic lupus erythematosus (SLE) is a multi-system inflammatory autoimmune disease of incompletely understood etiology. It is thought that environmental exposures 'trigger' or accelerate the disease in genetically-predisposed individuals. Areas covered: Substantial epidemiological evidence exists to support the association between cigarette smoking and the risk of incident SLE. Recent evidence points to current smoking as the specific risk factor, with decreasing risk 5 years after smoking cessation, and the greatest risk for disease characterized by the presence of SLE-specific autoantibodies. Research has begun to search for possible explanations for the temporal nature of the relationship between current smoking and autoantibody positive-SLE. Here we review potential biologic mechanisms linking smoking and SLE risk, including effects upon T and B cells, inflammatory cytokines, oxidative stress, and the formation of short-lived DNA adducts. Expert commentary: The directions for future research in this field include studies of gene-environment interactions, epigenetics, metabolomics and putative biologic mechanisms.

Creation and manipulation of topological states in chiral nematic microspheres

NASA Astrophysics Data System (ADS)

Orlova, Tetiana; Aßhoff, Sarah Jane; Yamaguchi, Tadatsugu; Katsonis, Nathalie; Brasselet, Etienne

2015-07-01

Topology is a universal concept that is encountered in daily life and is known to determine many static and dynamical properties of matter. Taming and controlling the topology of materials therefore constitutes a contemporary interdisciplinary challenge. Building on the controllable spatial properties of soft matter appears as a relevant strategy to address the challenge, in particular, because it may lead to paradigmatic model systems that allow checking theories experimentally. Here we report experimentally on a wealth of complex free-standing metastable topological architectures at the micron scale, in frustrated chiral nematic droplets. These results support recent works predicting the formation of free-standing knotted and linked disclination structures in confined chiral nematic fluids. We also demonstrate that various kinds of external fields (thermal, electrical and optical) can be used to achieve topological remote control. All this may foster the development of new devices based on topologically structured soft media.

DOE Office of Scientific and Technical Information (OSTI.GOV)

T.Rex is used to explore tabular data sets containing up to ten million records to help rapidly understand a previously unknown data set. Analysis can quickly identify patterns of interest and the records and fields that capture those patterns. T.Rex contains a growing set of deep analytical tools and supports robust export capabilities that selected data can be incorporated into to other specialized tools for further analysis. T.Rex is flexible in ingesting different types and formats of data, allowing the user to interactively experiment and perform trial and error guesses on the structure of the data; and also has amore » variety of linked visual analytic tools that enable exploration of the data to find relevant content, relationships among content, trends within the content, and capture knowledge about the content. Finally, T.Rex has a rich export capability, to extract relevant subsets of a larger data source, to further analyze their data in other analytic tools.« less

Standard Generalized Markup Language for self-defining structured reports.

PubMed

Kahn, C E

1999-01-01

Structured reporting is the process of using standardized data elements and predetermined data-entry formats to record observations. The Standard Generalized Markup Language (SGML; International Standards Organization (ISO) 8879:1986)--an open, internationally accepted standard for document interchange was used to encode medical observations acquired in an Internet-based structured reporting system. The resulting report is self-documenting: it includes a definition of its allowable data fields and values encoded as a report-specific SGML document type definition (DTD). The data-entry forms, DTD, and report document instances are based on report specifications written in a simple, SGML-based language designed for that purpose. Reporting concepts can be linked with those of external vocabularies such as the Unified Medical Language System (UMLS) Metathesaurus. The use of open standards such as SGML is an important step in the creation of open, universally comprehensible structured reports.