Optical Pattern Formation in Cold Atoms: Explaining the Red-Blue Asymmetry

NASA Astrophysics Data System (ADS)

Schmittberger, Bonnie; Gauthier, Daniel

2013-05-01

The study of pattern formation in atomic systems has provided new insight into fundamental many-body physics and low-light-level nonlinear optics. Pattern formation in cold atoms in particular is of great interest in condensed matter physics and quantum information science because atoms undergo self-organization at ultralow input powers. We recently reported the first observation of pattern formation in cold atoms but found that our results were not accurately described by any existing theoretical model of pattern formation. Previous models describing pattern formation in cold atoms predict that pattern formation should occur using both red and blue-detuned pump beams, favoring a lower threshold for blue detunings. This disagrees with our recent work, in which we only observed pattern formation with red-detuned pump beams. Previous models also assume a two-level atom, which cannot account for the cooling processes that arise when beams counterpropagate through a cold atomic vapor. We describe a new model for pattern formation that accounts for Sisyphus cooling in multi-level atoms, which gives rise to a new nonlinearity via spatial organization of the atoms. This spatial organization causes a sharp red-blue detuning asymmetry, which agrees well with our experimental observations. We gratefully acknowledge the financial support of the NSF through Grant #PHY-1206040.

Multiple core-hole formation by free-electron laser radiation in molecular nitrogen

NASA Astrophysics Data System (ADS)

Banks, H. I. B.; Little, D. A.; Emmanouilidou, A.

2018-05-01

We investigate the formation of multiple-core-hole states of molecular nitrogen interacting with a free-electron laser pulse. In previous work, we obtained bound and continuum molecular orbitals in the single-center expansion scheme and used these orbitals to calculate photo-ionization and auger decay rates. We extend our formulation to track the proportion of the population that accesses single-site versus two-site double-core-hole (TSDCH) states, before the formation of the final atomic ions. We investigate the pulse parameters that favor the formation of the single-site and TSDCH as well as triple-core-hole states for 525 and 1100 eV photons.

Do airborne microbes matter for atmospheric chemistry and cloud formation?

PubMed

Konstantinidis, Konstantinos T

2014-06-01

The role of airborne microbial cells in the chemistry of the atmosphere and cloud formation remains essentially speculative. Recent studies have indicated that microbes might be more important than previously anticipated for atmospheric processes. However, more work and direct communication between microbiologists and atmospheric scientists and modellers are necessary to better understand and model bioaerosol-cloud-precipitation-climate interactions. © 2014 Society for Applied Microbiology and John Wiley & Sons Ltd.

A review of biostratigraphic studies in the olistostrome deposits of Karangsambung Formation

NASA Astrophysics Data System (ADS)

Hendrizan, Marfasran

2018-02-01

Planktonic foraminifera is widely used for marine sediment biostratigraphy. Foraminiferal biostratigraphy of Karangsambung Formation is relatively rare to be investigated by previous researchers. A review of foraminiferal biostratigraphy is expected to be early work to perform a research about the ages of Tertiary rock formations in Karangsambung. The research area is formed by olistostrome process; a sedimentary slide deposit characterized by bodies of harder rock mixed and dispersed in a matrix. Biostratigraphic studies based on foraminifera and nannoplankton in Karangsambung Formation are still qualitative analysis using fossils biomarker. However, the age of this formation is still debatable based on foraminifera and nannofossil analysis. Two explanations of debatable ages in Karangsambung Formation that is possibly developed in Karangsambung area: firstly, Karangsambung Formation is characterized by normal sedimentation in some places and other regions such Kali Welaran and Clebok, Village as a product of olistostrome, and secondly, Karangsambung Formation is olistostrome deposit. However, micropaleontology sampling and analysis in matrix clays from olistostrome were ignored causing biostratigraphical results in those matrix clays occurred in normal sedimentation process and achieving the age of middle Eocene to Oligocene. We suppose previous authors picked samples in matrix of Karangsambung Formation from several river sections, which will make misinterpretation of the age of Karangsambung Formation. The age of middle to late Eocene probably is the dates of the older sediment that was reworked by sliding and sampling process and accumulated in Karangsambung Formation. The date of Karangsambung Fm is in Oligocene period based on a finding of several calcareous nannofossils. Detailed micropaleontological analysis of olistostrome deposits in Karangsambung Formation should be reevaluated for new finding of the accurate dating. Re-evaluation should start from detailed sedimentological mapping of Karangsambung Fm transects based on previous authors especially Kali Welaran, Jatibungkus transect and Clebok section followed by systematic sampling of normal sedimentation process from olistostrome products and matrix clays of olistostrome Karangsambung Formation. Finally, quantitative method of micropaleontological analysis can be applied to identify the age of Karangsambung Formation.

Parser Combinators: a Practical Application for Generating Parsers for NMR Data

PubMed Central

Fenwick, Matthew; Weatherby, Gerard; Ellis, Heidi JC; Gryk, Michael R.

2013-01-01

Nuclear Magnetic Resonance (NMR) spectroscopy is a technique for acquiring protein data at atomic resolution and determining the three-dimensional structure of large protein molecules. A typical structure determination process results in the deposition of a large data sets to the BMRB (Bio-Magnetic Resonance Data Bank). This data is stored and shared in a file format called NMR-Star. This format is syntactically and semantically complex making it challenging to parse. Nevertheless, parsing these files is crucial to applying the vast amounts of biological information stored in NMR-Star files, allowing researchers to harness the results of previous studies to direct and validate future work. One powerful approach for parsing files is to apply a Backus-Naur Form (BNF) grammar, which is a high-level model of a file format. Translation of the grammatical model to an executable parser may be automatically accomplished. This paper will show how we applied a model BNF grammar of the NMR-Star format to create a free, open-source parser, using a method that originated in the functional programming world known as “parser combinators”. This paper demonstrates the effectiveness of a principled approach to file specification and parsing. This paper also builds upon our previous work [1], in that 1) it applies concepts from Functional Programming (which is relevant even though the implementation language, Java, is more mainstream than Functional Programming), and 2) all work and accomplishments from this project will be made available under standard open source licenses to provide the community with the opportunity to learn from our techniques and methods. PMID:24352525

Judicial case management and the custody and access assessment: melding the approaches.

PubMed

Leverette, J; Crowe, T; Wenglensky, R; Dunbar, M

1997-08-01

The presence of the Unified Family Court, with procedures emphasizing judicial case management and settlement in custody disputes, provided an opportunity to combine these practices with those of a university hospital-based family court clinic experienced in the provision of custody assessments. Specifically, a process integrating the clinical custody assessment with the work of counsel and court procedures was developed. This format, incorporating the preparation of a clinical settlement conference brief, was then evaluated with emphasis on time management, outcome in relation to settlement or trial, and the effect of clinical assessment at critical points in the combined endeavour. Seventy-two judicial referrals conducted using this format were reviewed. To assess efficiency, we determined time intervals to various points in the process and compared them to previous local practice. Settlement rates, recorded incrementally to mark each component's contribution, were compared with rates noted in the literature. Assessment functions were identified according to the point of resolution of the dispute and in a manner to facilitate comparison with previously published work. The format resulted in 50% of cases settling without trial in under 5 months, a minimum settlement rate of 50%, and confirmed the ability of clinical assessment to contribute flexibly to dispute resolution in several conciliation venues and at trial. Combining legal and mental health efforts can results in more efficient use of resources and a substantial diversion of cases from continuing litigation. While altering the process of clinical assessments enhances such findings, further work is required to assure appropriate selection criteria for various intervention formats.

Millimeter Wave Spectrum and Astronomical Search for Vinyl Formate

NASA Astrophysics Data System (ADS)

Alonso, E. R.; Kolesniková, L.; Tercero, B.; Cabezas, C.; Alonso, J. L.; Cernicharo, J.; Guillemin, J.-C.

2016-11-01

Previous detections of methyl and ethyl formate make other small substituted formates potential candidates for observation in the interstellar medium. Among them, vinyl formate is one of the simplest unsaturated carboxylic ester. The aim of this work is to provide direct experimental frequencies of the ground vibrational state of vinyl formate in a large spectral range for astrophysical use. The room-temperature rotational spectrum of vinyl formate has been measured from 80 to 360 GHz and analyzed in terms of Watson’s semirigid rotor Hamiltonian. Two thousand six hundred transitions within J = 3-88 and K a = 0-28 were assigned to the most stable conformer of vinyl formate and a new set of spectroscopic constants was accurately determined. Spectral features of vinyl formate were then searched for in Orion KL, Sgr B2(N), B1-b, and TMC-1 molecular clouds. Upper limits to the column density of vinyl formate are provided.

A possible formation scenario for dwarf spheroidal galaxies - III. Adding star formation histories to the fiducial model

NASA Astrophysics Data System (ADS)

Alarcón Jara, A. G.; Fellhauer, M.; Matus Carrillo, D. R.; Assmann, P.; Urrutia Zapata, F.; Hazeldine, J.; Aravena, C. A.

2018-02-01

Dwarf spheroidal galaxies are regarded as the basic building blocks in the formation of larger galaxies and are the most dark matter dominated systems in the Universe, known so far. There are several models that attempt to explain their formation and evolution, but they have problems modelling the formation of isolated dwarf spheroidal galaxies. Here, we will explain a possible formation scenario in which star clusters form inside the dark matter halo of a dwarf spheroidal galaxy. These star clusters suffer from low star formation efficiency and dissolve while orbiting inside the dark matter halo. Thereby, they build the faint luminous components that we observe in dwarf spheroidal galaxies. In this paper, we study this model by adding different star formation histories to the simulations and compare the results with our previous work and observational data to show that we can explain the formation of dwarf spheroidal galaxies.

The dual-basin landscape in GFP folding

PubMed Central

Andrews, Benjamin T.; Gosavi, Shachi; Finke, John M.; Onuchic, José N.; Jennings, Patricia A.

2008-01-01

Recent experimental studies suggest that the mature GFP has an unconventional landscape composed of an early folding event with a typical funneled landscape, followed by a very slow search and rearrangement step into the locked, active chromophore-containing structure. As we have shown previously, the substantial difference in time scales is what generates the observed hysteresis in thermodynamic folding. The interconversion between locked and the soft folding structures at intermediate denaturant concentrations is so slow that it is not observed under the typical experimental observation time. Simulations of a coarse-grained model were used to describe the fast folding event as well as identify native-like intermediates on energy landscapes enroute to the fluorescent native fold. Interestingly, these simulations reveal structural features of the slow dynamic transition to chromophore activation. Experimental evidence presented here shows that the trapped, native-like intermediate has structural heterogeneity in residues previously linked to chromophore formation. We propose that the final step of GFP folding is a “locking” mechanism leading to chromophore formation and high stability. The combination of previous experimental work and current simulation work is explained in the context of a dual-basin folding mechanism described above. PMID:18713871

Stochastic Local Search for Core Membership Checking in Hedonic Games

NASA Astrophysics Data System (ADS)

Keinänen, Helena

Hedonic games have emerged as an important tool in economics and show promise as a useful formalism to model multi-agent coalition formation in AI as well as group formation in social networks. We consider a coNP-complete problem of core membership checking in hedonic coalition formation games. No previous algorithms to tackle the problem have been presented. In this work, we overcome this by developing two stochastic local search algorithms for core membership checking in hedonic games. We demonstrate the usefulness of the algorithms by showing experimentally that they find solutions efficiently, particularly for large agent societies.

AN INTERDISCIPLINARY APPROACH TO RIPARIAN MEADOW CHARACTERIZATION AND PRIORITIZATION, CENTRAL GREAT BASIN

EPA Science Inventory

The Great Basin Ecosystem Management Research group has described the hydrological, geophysical, and geomorphic conditions that lead to the formation and maintenance of riparian meadows of central Nevada. Previous work on these systems has focused on understanding a few study mea...

Mechanisms of Nitrogen Oxide Formation During Ensiling

EPA Science Inventory

Silage (ensiled feed), as a dairy’s greatest operational cost, is its most critical feed commodity. The continued use of silage is essential to a highly productive and economically viable industry. Our previous work has shown that silages are a major source of volatile organic co...

Precision Formation Keeping at L2 Using the Autonomous Formation Flying Sensor

NASA Technical Reports Server (NTRS)

McLoughlin, Terence H.; Campbell, Mark

2004-01-01

Recent advances in formation keeping for large numbers of spacecraft using the Autonomous Formation Flying are presented. This sensor, currently under development at JPL, has been identified as a key component in future formation flying spacecraft missions. The sensor provides accurate range and bearing measurements between pairs of spacecraft using GPS technology. Previous theoretical work by the authors has focused on developing a decentralized scheduling algorithm to control the tasking of such a sensor between the relative range and bearing measurements to each node in the formation. The resulting algorithm has been modified to include switching constraints in the sensor. This paper also presents a testbed for real time validation of a sixteen-node formation based on the Stellar Imager mission. Key aspects of the simulation include minimum fuel maneuvers based on free-body dynamics and a three body propagator for simulating the formation at L2.

Uranium isotope ratios of Muonionalusta troilite and complications for the absolute age of the IVA iron meteorite core

NASA Astrophysics Data System (ADS)

Brennecka, Gregory A.; Amelin, Yuri; Kleine, Thorsten

2018-05-01

The crystallization ages of planetary crustal material (given by basaltic meteorites) and planetary cores (given by iron meteorites) provide fiducial marks for the progress of planetary formation, and thus, the absolute ages of these objects fundamentally direct our knowledge and understanding of planet formation and evolution. The lone precise absolute age of planetary core material was previously obtained on troilite inclusions from the IVA iron meteorite Muonionalusta. This previously reported Pb-Pb age of 4565.3 ± 0.1 Ma-assuming a 238U/235U =137.88-only post-dated the start of the Solar System by approximately 2-3 million years, and mandated fast cooling of planetary core material. Since an accurate Pb-Pb age requires a known 238U/235U of the sample, we have measured both 238U/235U and Pb isotopic compositions of troilite inclusions from Muonionalusta. The measured 238U/235U of the samples range from ∼137.84 to as low as ∼137.22, however based on Pb and U systematics, terrestrial contamination appears pervasive and has affected samples to various extents for Pb and U. The cause of the relative 235U excess in one sample does not appear to be from terrestrial contamination or the decay of short-lived 247Cm, but is more likely from fractionation of U isotopes during metal-silicate separation during core formation, exacerbated by the extreme U depletion in the planetary core. Due to limited Pb isotopic variation and terrestrial disturbance, no samples of this study produced useful age information; however the clear divergence from the previously assumed 238U/235U of any troilite in Muonionalusta introduces substantial uncertainty to the previously reported absolute age of the sample without knowledge of the 238U/235U of the sample. Uncertainties associated with U isotope heterogeneity do not allow for definition of a robust age of solidification and cooling for the IVA core. However, one sample of this work-paired with previous work using short-lived radionuclides-suggests that the cooling age of the IVA core may be significantly younger than previously thought. This work indicates the metallic cores of protoplanetary bodies solidified no earlier than the first ∼5-10 million years of the Solar System.

Application of Multi-Frequency Modulation (MFM) for High-Speed Data Communications to a Voice Frequency Channel

DTIC Science & Technology

1990-06-01

reader is cautioned that computer programs developed in this research may not have been exercised for all cases of interest. While every effort has been...Source of Funding Numbers _. Program Element No Project No I Task No I Work Unit Accession No 11 Title (Include security classflcation) APPLICATION OF...formats. Previous applications of these encoding formats were on industry standard computers (PC) over a 16-20 klIz channel. This report discusses the

Free-Field Spatialized Aural Cues for Synthetic Environments

DTIC Science & Technology

1994-09-01

any of the references previously listed. B. MIDI Other than electronic musicians and a few hobbyists, the Musical Instrument Digital Interface (MIDI...developed in 1983 and still has a long way to go in improving its capabilities, but the advantages are numerous. An entire musical score can be stored...the same musical file on a computer in one of the various digital sound formats could easily occupy 90 megabytes of disk space. 7 K III. PREVIOUS WORK

Ultrasmooth Perovskite Film via Mixed Anti-Solvent Strategy with Improved Efficiency.

PubMed

Yu, Yu; Yang, Songwang; Lei, Lei; Cao, Qipeng; Shao, Jun; Zhang, Sheng; Liu, Yan

2017-02-01

Most antisolvents employed in previous research were miscible with perovskite precursor solution. They always led to fast formation of perovskite even if the intermediate stage existed, which was not beneficial to obtain high quality perovskite films and made the formation process less controllable. In this work, a novel ethyl ether/n-hexane mixed antisolvent (MAS) was used to achieve high nucleation density and slow down the formation process of perovskite, producing films with improved orientation of grains and ultrasmooth surfaces. These high quality films exhibited efficient charge transport at the interface of perovskite/hole transport material and perovskite solar cells based on these films showed greatly improved performance with the best power conversion efficiency of 17.08%. This work also proposed a selection principle of MAS and showed that solvent engineering by designing the mixed antisolvent system can lead to the fabrication of high-performance perovskite solar cells.

Parametric Study of Amorphous High-Entropy Alloys formation from two New Perspectives: Atomic Radius Modification and Crystalline Structure of Alloying Elements

NASA Astrophysics Data System (ADS)

Hu, Q.; Guo, S.; Wang, J. M.; Yan, Y. H.; Chen, S. S.; Lu, D. P.; Liu, K. M.; Zou, J. Z.; Zeng, X. R.

2017-01-01

Chemical and topological parameters have been widely used for predicting the phase selection in high-entropy alloys (HEAs). Nevertheless, previous studies could be faulted due to the small number of available data points, the negligence of kinetic effects, and the insensitivity to small compositional changes. Here in this work, 92 TiZrHfM, TiZrHfMM, TiZrHfMMM (M = Fe, Cr, V, Nb, Al, Ag, Cu, Ni) HEAs were prepared by melt spinning, to build a reliable and sufficiently large material database to inspect the robustness of previously established parameters. Modification of atomic radii by considering the change of local electronic environment in alloys, was critically found out to be superior in distinguishing the formation of amorphous and crystalline alloys, when compared to using atomic radii of pure elements in topological parameters. Moreover, crystal structures of alloying element were found to play an important role in the amorphous phase formation, which was then attributed to how alloying hexagonal-close-packed elements and face-centered-cubic or body-centered-cubic elements can affect the mixing enthalpy. Findings from this work not only provide parametric studies for HEAs with new and important perspectives, but also reveal possibly a hidden connection among some important concepts in various fields.

Beneath the scaly clay and clay breccia of Karangsambung area

NASA Astrophysics Data System (ADS)

Arisbaya, Ilham; Handayani, Lina

2018-02-01

Karangsambung area, Central Java-Indonesia, records tectonic evolution of the western part of Sundaland margin. The area is thought to have undergone a long tectonic evolution from palaeosubduction, collision with the continental fragments of Gondwana, to the formation of the recent subduction zone. An interesting phenomenon in this area is the presence of the Late Cretaceous ophiolitic blocks with an east northeast (ENE) trending-direction surrounded by the east trend of Eocene - Oligocene sedimentary melange formation. There was also an ENE trending Dakah volcanic rocks unit found in this area, with approximately equivalent age with the sedimentary mélange formation. There are two main interpretations regarding this volcanic unit, as an olistostrome and as an insitu shallow subduction magmatic product. Detailed mechanism of the emplacement of the Late Cretaceous ophiolite and the genesis of the volcanic rocks unit and their implications to the regional tectonic model is still open for discussion. Geophysical research in this key area may help to reveal the geometry, relationship among rocks units, and tectonic evolution. Unfortunately, geophysical studies in this area are still lacking. Previous geophysical work in Karangsambung still leaves uncertainty, especially in depth control and spatial resolution issue. Here we describe the results of previous works in Karangsambung as basic knowledge for the upcoming geophysical study.

Kinetic theory of pattern formation in mixtures of microtubules and molecular motors

NASA Astrophysics Data System (ADS)

Maryshev, Ivan; Marenduzzo, Davide; Goryachev, Andrew B.; Morozov, Alexander

2018-02-01

In this study we formulate a theoretical approach, based on a Boltzmann-like kinetic equation, to describe pattern formation in two-dimensional mixtures of microtubular filaments and molecular motors. Following the previous work by Aranson and Tsimring [Phys. Rev. E 74, 031915 (2006), 10.1103/PhysRevE.74.031915] we model the motor-induced reorientation of microtubules as collision rules, and devise a semianalytical method to calculate the corresponding interaction integrals. This procedure yields an infinite hierarchy of kinetic equations that we terminate by employing a well-established closure strategy, developed in the pattern-formation community and based on a power-counting argument. We thus arrive at a closed set of coupled equations for slowly varying local density and orientation of the microtubules, and study its behavior by performing a linear stability analysis and direct numerical simulations. By comparing our method with the work of Aranson and Tsimring, we assess the validity of the assumptions required to derive their and our theories. We demonstrate that our approximation-free evaluation of the interaction integrals and our choice of a systematic closure strategy result in a rather different dynamical behavior than was previously reported. Based on our theory, we discuss the ensuing phase diagram and the patterns observed.

Redesign of a large lecture course into a small-group learning course.

PubMed

Ferreri, Stefanie P; O'Connor, Shanna K

2013-02-12

Objective. To describe the redesign of a large self-care course previously delivered in a traditional lecture format to a small-group case-based course.Design. Prereadings and study guides were used to facilitate students' independent learning prior to class. Large lecture classes were replaced with smaller group-based learning classes. This change in delivery format allowed students to spend the majority of class time conducting small-group learning activities, such as case studies to promote communication, problem solving, and interpersonal skills.Assessment. Changes in course delivery were assessed over a 2-year period by comparing students' grades and satisfaction ratings on course evaluations. A comparison of course evaluations between the class formats revealed that students were provided more opportunities to develop verbal communication skills and tackle and resolve unfamiliar problems in the revised course. The activities resulted in better overall course grades.Conclusions. Redesigning to a small-group discussion format for a self-care course can be accomplished by increasing student accountability for acquiring factual content outside the classroom. Compared with student experiences in the previous large lecture-based class, students in the smaller-class format reported a preference for working in teams and achieved significantly better academic grades with the new course format.

MILLIMETER WAVE SPECTRUM AND ASTRONOMICAL SEARCH FOR VINYL FORMATE

DOE Office of Scientific and Technical Information (OSTI.GOV)

Alonso, E. R.; Kolesniková, L.; Cabezas, C.

2016-11-20

Previous detections of methyl and ethyl formate make other small substituted formates potential candidates for observation in the interstellar medium. Among them, vinyl formate is one of the simplest unsaturated carboxylic ester. The aim of this work is to provide direct experimental frequencies of the ground vibrational state of vinyl formate in a large spectral range for astrophysical use. The room-temperature rotational spectrum of vinyl formate has been measured from 80 to 360 GHz and analyzed in terms of Watson’s semirigid rotor Hamiltonian. Two thousand six hundred transitions within J = 3–88 and K {sub a} = 0–28 were assignedmore » to the most stable conformer of vinyl formate and a new set of spectroscopic constants was accurately determined. Spectral features of vinyl formate were then searched for in Orion KL, Sgr B2(N), B1-b, and TMC-1 molecular clouds. Upper limits to the column density of vinyl formate are provided.« less

The Brain/MINDS 3D digital marmoset brain atlas

PubMed Central

Woodward, Alexander; Hashikawa, Tsutomu; Maeda, Masahide; Kaneko, Takaaki; Hikishima, Keigo; Iriki, Atsushi; Okano, Hideyuki; Yamaguchi, Yoko

2018-01-01

We present a new 3D digital brain atlas of the non-human primate, common marmoset monkey (Callithrix jacchus), with MRI and coregistered Nissl histology data. To the best of our knowledge this is the first comprehensive digital 3D brain atlas of the common marmoset having normalized multi-modal data, cortical and sub-cortical segmentation, and in a common file format (NIfTI). The atlas can be registered to new data, is useful for connectomics, functional studies, simulation and as a reference. The atlas was based on previously published work but we provide several critical improvements to make this release valuable for researchers. Nissl histology images were processed to remove illumination and shape artifacts and then normalized to the MRI data. Brain region segmentation is provided for both hemispheres. The data is in the NIfTI format making it easy to integrate into neuroscience pipelines, whereas the previous atlas was in an inaccessible file format. We also provide cortical, mid-cortical and white matter boundary segmentations useful for visualization and analysis. PMID:29437168

Dynamic model based on voltage transfer curve for pattern formation in dielectric barrier glow discharge

DOE Office of Scientific and Technical Information (OSTI.GOV)

Li, Ben; He, Feng; Ouyang, Jiting, E-mail: jtouyang@bit.edu.cn

2015-12-15

Simulation work is very important for understanding the formation of self-organized discharge patterns. Previous works have witnessed different models derived from other systems for simulation of discharge pattern, but most of these models are complicated and time-consuming. In this paper, we introduce a convenient phenomenological dynamic model based on the basic dynamic process of glow discharge and the voltage transfer curve (VTC) to study the dielectric barrier glow discharge (DBGD) pattern. VTC is an important characteristic of DBGD, which plots the change of wall voltage after a discharge as a function of the initial total gap voltage. In the modeling,more » the combined effect of the discharge conditions is included in VTC, and the activation-inhibition effect is expressed by a spatial interaction term. Besides, the model reduces the dimensionality of the system by just considering the integration effect of current flow. All these greatly facilitate the construction of this model. Numerical simulations turn out to be in good accordance with our previous fluid modeling and experimental result.« less

Refinement of determination of critical thresholds of stress-strain behaviour by using AE data: potential for evaluation of durability of natural stone

NASA Astrophysics Data System (ADS)

Prikryl, Richard; Lokajíček, Tomáš

2017-04-01

According to previous studies, evaluation of stress-strain behaviour (in uniaxial compression) of various rocks appears to be effective tool allowing for prediction of resistance of natural stone to some physical weathering processes. Precise determination of critical thresholds, specifically of 'crack initiation' and 'crack damage' is fundamental issue in this approach. In contrast to 'crack damage stress/strain threshold', which can be easily read from deflection point on volumetric curve, detection of 'crack initiation' is much more difficult. Besides previously proposed mathematical processing of axial stress-strain curve, recording of acoustic emission (AE) data and their processing provide direct measure of various stress/strain thresholds, specifically of 'crack initiation'. This specific parameter is required during successive computation of energetic parameters (mechanical work), that can be stored by a material without formation of new defects (microcracks) due to acting stress. Based on our experimental data, this mechanical work seems to be proportional to the resistance of a material to formation of mode I (tensile) cracks that are responsible for destruction of subsurface below exposed faces of natural stone.

Planet Formation in Disks with Inclined Binary Companions: Can Primordial Spin-Orbit Misalignment be Produced?

NASA Astrophysics Data System (ADS)

Zanazzi, J. J.; Lai, Dong

2018-04-01

Many hot Jupiter (HJ) systems have been observed to have their stellar spin axis misaligned with the planet's orbital angular momentum axis. The origin of this spin-orbit misalignment and the formation mechanism of HJs remain poorly understood. A number of recent works have suggested that gravitational interactions between host stars, protoplanetary disks, and inclined binary companions may tilt the stellar spin axis with respect to the disk's angular angular momentum axis, producing planetary systems with misaligned orbits. These previous works considered idealized disk evolution models and neglected the gravitational influence of newly formed planets. In this paper, we explore how disk photoevaporation and planet formation and migration affect the inclination evolution of planet-star-disk-binary systems. We take into account planet-disk interactions and the gravitational spin-orbit coupling between the host star and the planet. We find that the rapid depletion of the inner disk via photoevaporation reduces the excitation of stellar obliquities. Depending on the formation and migration history of HJs, the spin-orbit coupling between the star and the planet may reduces and even completely suppress the excitation of stellar obliquities. Our work constrains the formation/migration history of HJs. On the other hand, planetary systems with "cold" Jupiters or close-in super-earths may experience excitation of stellar obliquities in the presence of distant inclined companions.

Planet formation in discs with inclined binary companions: can primordial spin-orbit misalignment be produced?

NASA Astrophysics Data System (ADS)

Zanazzi, J. J.; Lai, Dong

2018-07-01

Many hot Jupiter (HJ) systems have been observed to have their stellar spin axis misaligned with the planet's orbital angular momentum axis. The origin of this spin-orbit misalignment and the formation mechanism of HJs remain poorly understood. A number of recent works have suggested that gravitational interactions between host stars, protoplanetary discs, and inclined binary companions may tilt the stellar spin axis with respect to the disc's angular angular momentum axis, producing planetary systems with misaligned orbits. These previous works considered idealized disc evolution models and neglected the gravitational influence of newly formed planets. In this paper, we explore how disc photoevaporation and planet formation and migration affect the inclination evolution of planet-star-disc-binary systems. We take into account planet-disc interactions and the gravitational spin-orbit coupling between the host star and the planet. We find that the rapid depletion of the inner disc via photoevaporation reduces the excitation of stellar obliquities. Depending on the formation and migration history of HJs, the spin-orbit coupling between the star and the planet may reduces and even completely suppress the excitation of stellar obliquities. Our work constrains the formation/migration history of HJs. On the other hand, planetary systems with `cold' Jupiters or close-in super-earths may experience excitation of stellar obliquities in the presence of distant inclined companions.

Trifluoperazine inhibits acetaminophen-induced hepatotoxicity and hepatic reactive nitrogen formation in mice and in freshly isolated hepatocytes.

PubMed

Banerjee, Sudip; Melnyk, Stepan B; Krager, Kimberly J; Aykin-Burns, Nukhet; McCullough, Sandra S; James, Laura P; Hinson, Jack A

2017-01-01

The hepatotoxicity of acetaminophen (APAP) occurs by initial metabolism to N-acetyl-p-benzoquinone imine which depletes GSH and forms APAP-protein adducts. Subsequently, the reactive nitrogen species peroxynitrite is formed from nitric oxide (NO) and superoxide leading to 3-nitrotyrosine in proteins. Toxicity occurs with inhibited mitochondrial function. We previously reported that in hepatocytes the nNOS (NOS1) inhibitor NANT inhibited APAP toxicity, reactive nitrogen and oxygen species formation, and mitochondrial dysfunction. In this work we examined the effect of trifluoperazine (TFP), a calmodulin antagonist that inhibits calcium induced nNOS activation, on APAP hepatotoxicity and reactive nitrogen formation in murine hepatocytes and in vivo . In freshly isolated hepatocytes TFP inhibited APAP induced toxicity, reactive nitrogen formation (NO, GSNO, and 3-nitrotyrosine in protein), reactive oxygen formation (superoxide), loss of mitochondrial membrane potential, decreased ATP production, decreased oxygen consumption rate, and increased NADH accumulation. TFP did not alter APAP induced GSH depletion in the hepatocytes or the formation of APAP protein adducts which indicated that reactive metabolite formation was not inhibited. Since we previously reported that TFP inhibits the hepatotoxicity of APAP in mice without altering hepatic APAP-protein adduct formation, we examined the APAP treated mouse livers for evidence of reactive nitrogen formation. 3-Nitrotyrosine in hepatic proteins and GSNO were significantly increased in APAP treated mouse livers and decreased in the livers of mice treated with APAP plus TFP. These data are consistent with a hypothesis that APAP hepatotoxicity occurs with altered calcium metabolism, activation of nNOS leading to increased reactive nitrogen formation, and mitochondrial dysfunction.

Otoconia as test masses in biological accelerometers: what can we learn about their formation from evolutionary studies and from work in microgravity?

PubMed

Ross, M D; Donovan, K M

1986-01-01

This paper reviews previous findings and introduces new material about otolith end organs that help us to understand their functioning and development. In particular, we consider the end organs as biological accelerometers. The otoconia are dealt with as test masses whose substructure and evolutionary trend toward calcite may prove significant in understanding formation requirements. Space-flight helps illuminate the influence of gravity, while right-left asymmetry is suggested by study of certain rat strains.

Single-shot work extraction in quantum thermodynamics revisited

NASA Astrophysics Data System (ADS)

Wang, Shang-Yung

2018-01-01

We revisit the problem of work extraction from a system in contact with a heat bath to a work storage system, and the reverse problem of state formation from a thermal system state in single-shot quantum thermodynamics. A physically intuitive and mathematically simple approach using only elementary majorization theory and matrix analysis is developed, and a graphical interpretation of the maximum extractable work, minimum work cost of formation, and corresponding single-shot free energies is presented. This approach provides a bridge between two previous methods based respectively on the concept of thermomajorization and a comparison of subspace dimensions. In addition, a conceptual inconsistency with regard to general work extraction involving transitions between multiple energy levels of the work storage system is clarified and resolved. It is shown that an additional contribution to the maximum extractable work in those general cases should be interpreted not as work extracted from the system, but as heat transferred from the heat bath. Indeed, the additional contribution is an artifact of a work storage system (essentially a suspended ‘weight’ that can be raised or lowered) that does not truly distinguish work from heat. The result calls into question the common concept that a work storage system in quantum thermodynamics is simply the quantum version of a suspended weight in classical thermodynamics.

Pulsed laser illumination of photovoltaic cells

NASA Technical Reports Server (NTRS)

Yater, Jane A.; Lowe, Roland A.; Jenkins, Phillip P.; Landis, Geoffrey A.

1995-01-01

In future space missions, free electron lasers (FEL) may be used to illuminate photovoltaic receivers to provide remote power. Both the radio-frequency (RF) and induction FEL produce pulsed rather than continuous output. In this work we investigate cell response to pulsed laser light which simulates the RF FEL format. The results indicate that if the pulse repetition is high, cell efficiencies are only slightly reduced compared to constant illumination at the same wavelength. The frequency response of the cells is weak, with both voltage and current outputs essentially dc in nature. Comparison with previous experiments indicates that the RF FEL pulse format yields more efficient photovoltaic conversion than does an induction FEL format.

Pulsed laser illumination of photovoltaic cells

NASA Technical Reports Server (NTRS)

Yater, Jane A.; Lowe, Roland A.; Jenkins, Phillip P.; Landis, Geoffrey A.

1994-01-01

In future space missions, free electron lasers (FEL) may be used to illuminate photovoltaic array receivers to provide remote power. Both the radio-frequency (RF) and induction FEL provide FEL produce pulsed rather than continuous output. In this work we investigate cell response to pulsed laser light which simulates the RF FEL format. The results indicate that if the pulse repetition is high, cell efficiencies are only slightly reduced compared to constant illumination at the same wavelength. The frequency response of the cells is weak, with both voltage and current outputs essentially dc in nature. Comparison with previous experiments indicates that the RF FEL pulse format yields more efficient photovoltaic conversion than does an induction FEL pulse format.

Distinguishing crystallization stages and their influence on quantum efficiency during perovskite solar cell formation in real-time.

PubMed

Wagner, Lukas; Mundt, Laura E; Mathiazhagan, Gayathri; Mundus, Markus; Schubert, Martin C; Mastroianni, Simone; Würfel, Uli; Hinsch, Andreas; Glunz, Stefan W

2017-11-02

Relating crystallization of the absorber layer in a perovskite solar cell (PSC) to the device performance is a key challenge for the process development and in-depth understanding of these types of high efficient solar cells. A novel approach that enables real-time photo-physical and electrical characterization using a graphite-based PSC is introduced in this work. In our graphite-based PSC, the device architecture of porous monolithic contact layers creates the possibility to perform photovoltaic measurements while the perovskite crystallizes within this scaffold. The kinetics of crystallization in a solution based 2-step formation process has been analyzed by real-time measurement of the external photon to electron quantum efficiency as well as the photoluminescence emission spectra of the solar cell. With this method it was in particular possible to identify a previously overlooked crystallization stage during the formation of the perovskite absorber layer. This stage has significant influence on the development of the photocurrent, which is attributed to the formation of electrical pathways between the electron and hole contact, enabling efficient charge carrier extraction. We observe that in contrast to previously suggested models, the perovskite layer formation is indeed not complete with the end of crystal growth.

The role of disc self-gravity in circumbinary planet systems - I. Disc structure and evolution

NASA Astrophysics Data System (ADS)

Mutter, Matthew M.; Pierens, Arnaud; Nelson, Richard P.

2017-03-01

We present the results of two-dimensional hydrodynamic simulations of self-gravitating circumbinary discs around binaries whose parameters match those of the circumbinary planet-hosting systems Kepler-16, Kepler-34 and Kepler-35. Previous work has shown that non-self-gravitating discs in these systems form an eccentric precessing inner cavity due to tidal truncation by the binary, and planets which form at large radii migrate until stalling at this cavity. Whilst this scenario appears to provide a natural explanation for the observed orbital locations of the circumbinary planets, previous simulations have failed to match the observed planet orbital parameters. The aim of this work is to examine the role of self-gravity in modifying circumbinary disc structure as a function of disc mass, prior to considering the evolution of embedded circumbinary planets. In agreement with previous work, we find that for disc masses between one and five times the minimum mass solar nebula (MMSN), disc self-gravity affects modest changes in the structure and evolution of circumbinary discs. Increasing the disc mass to 10 or 20 MMSN leads to two dramatic changes in disc structure. First, the scale of the inner cavity shrinks substantially, bringing its outer edge closer to the binary. Secondly, in addition to the eccentric inner cavity, additional precessing eccentric ring-like features develop in the outer regions of the discs. If planet formation starts early in the disc lifetime, these changes will have a significant impact on the formation and evolution of planets and precursor material.

Analysis of the Effect of Water Activity on Ice Formation Using a New Theory of Nucleation

NASA Technical Reports Server (NTRS)

Barahona, Donifan

2013-01-01

In this work a new theory of nucleation is developed and used to investigate the effect of water activity on the formation of ice within super-cooled droplets. The new theory is based on a novel concept where the interface is assumed to be made of liquid molecules trapped by the solid matrix. Using this concept new expressions are developed for the critical ice germ size and the nucleation work, with explicit dependencies on temperature and water activity. However unlike previous approaches, the new theory does not depend on the interfacial tension between liquid and ice. Comparison against experimental results shows that the new theory is able to reproduce the observed effect of water activity on nucleation rate and freezing temperature. It allows for the first time a theoretical derivation of the constant shift in water activity between melting and nucleation. The new theory offers a consistent thermodynamic view of ice nucleation, simple enough to be applied in atmospheric models of cloud formation.

Duration of the hydrocarbon fluid formation under thermobaric conditions of the Earth's upper mantle

NASA Astrophysics Data System (ADS)

Mukhina, Elena; Kolesnikov, Anton; Kutcherov, Vladimir

2016-04-01

Deep abiogenic formation of hydrocarbons is an inherent part of the Earth's global carbon cycle. It was experimentally confirmed that natural gas could be formed from inorganic carbon and hydrogen containing minerals at pressure and temperature corresponding to the Earth's upper mantle conditions. Reaction between calcite, wustite and water in the large volume device was studied in several works. It was previously proposed that reaction is possible only after 40 minutes of exposure at high pressure and temperature. In this work similar experiment at P = 60 kbar and T = 1200 K were carried out in "Toroid" type chamber with the 5 seconds duration of thermobaric exposure. Gas chromatographic analysis of the reaction products has shown the presence of hydrocarbon mixture comparable to 5 minutes and 6 hours exposure experiments. Based on this fact it is possible to conclude that the reaction of natural gas formation is instant at least at given thermobaric conditions. This experiment will help to better understand the process of deep hydrocarbon generation, particularly its kinetics.

Ignition and combustion characteristics of metallized propellants

NASA Technical Reports Server (NTRS)

Mueller, D. C.; Turns, Stephen R.

1991-01-01

Over the past six months, experimental investigations were continued and theoretical work on the secondary atomization process was begun. Final shakedown of the sizing/velocity measuring system was completed and the aluminum combustion detection system was modified and tested. Atomizer operation was improved to allow steady state operation over long periods of time for several slurries. To validate the theoretical modeling, work involving carbon slurry atomization and combustion was begun and qualitative observations were made. Simultaneous measurements of aluminum slurry droplet size distributions and detection of burning aluminum particles were performed at several axial locations above the burner. The principle theoretical effort was the application of a rigid shell formation model to aluminum slurries and an investigation of the effects of various parameters on the shell formation process. This shell formation model was extended to include the process leading up to droplet disruption, and previously developed analytical models were applied to yield theoretical aluminum agglomerate ignition and combustion times. The several theoretical times were compared with the experimental results.

Control of occupational exposure to hexavalent chromium and ozone in tubular wire arc-welding processes by replacement of potassium by lithium or by addition of zinc.

PubMed

Dennis, John H; French, Michael J; Hewitt, Peter J; Mortazavi, Seyed B; Redding, Christopher A J

2002-01-01

Hexavalent chromium [Cr(VI)] and ozone are produced in many arc-welding processes. Cr(VI) is formed when welding with chromium-containing alloys and is a suspected carcinogen. Ozone is formed by the action of ultraviolet light from the arc on oxygen and can cause severe irritation to the eyes and mucous membranes. Previous work has demonstrated that reduction of sodium and potassium in manual metal arc-welding electrodes leads to substantial reductions in Cr(VI) concentrations in the fume as well as a reduction in the fume formation rate. In this paper replacement of potassium by lithium in a tubular wire welding electrode (self-shielding flux-cored) is shown to give reductions in Cr(VI) concentrations and fume formation rates. Previous work has also demonstrated that use of a tubular wire (metal cored) containing 1% zinc can, under certain conditions, result in a reduction in Cr(VI) formation rate and in ozone concentration near the arc but with a rise in the total fume formation rate. The effects of different shield gases and different levels of zinc are examined. An experimental chromium-containing tubular wire with 1% zinc was used with the following shield gases: argon, Argoshield 5, Argoshield 20, Helishield 101, Ar + 2% CO2, Ar + 5% CO2, Ar + 1% O2 and Ar + 2% O2. The wire gave > 98% reduction in Cr(VI) formation rate compared to the control wire provided the shield gas contained no oxygen. When the shield gas did contain oxygen, 1% zinc enhanced Cr(VI) formation rate, resulting in more than double the rates measured when welding with the control wire. Experiments with zinc concentrations, from 0.018 to 0.9% using Helishield 101, gave results indicating that there is an optimum zinc concentration from the point of view of Cr(VI) reduction. Implications of the use of lithium or zinc on the overall exposure risk are discussed.

"AFacet": a geometry based format and visualizer to support SAR and multisensor signature generation

NASA Astrophysics Data System (ADS)

Rosencrantz, Stephen; Nehrbass, John; Zelnio, Ed; Sudkamp, Beth

2018-04-01

When simulating multisensor signature data (including SAR, LIDAR, EO, IR, etc...), geometry data are required that accurately represent the target. Most vehicular targets can, in real life, exist in many possible configurations. Examples of these configurations might include a rotated turret, an open door, a missing roof rack, or a seat made of metal or wood. Previously we have used the Modelman (.mmp) format and tool to represent and manipulate our articulable models. Unfortunately Modelman is now an unsupported tool and an undocumented binary format. Some work has been done to reverse engineer a reader in Matlab so that the format could continue to be useful. This work was tedious and resulted in an incomplete conversion. In addition, the resulting articulable models could not be altered and re-saved in the Modelman format. The AFacet (.afacet) articulable facet file format is a replacement for the binary Modelman (.mmp) file format. There is a one-time straight forward path for conversion from Modelman to the AFacet format. It is a simple ASCII, comma separated, self-documenting format that is easily readable (and in many cases usefully editable) by a human with any text editor, preventing future obsolescence. In addition, because the format is simple, it is relatively easy for even the most novice programmer to create a program to read and write AFacet files in any language without any special libraries. This paper presents the AFacet format, as well as a suite of tools for creating, articulating, manipulating, viewing, and converting the 370+ (when this paper was written) models that have been converted to the AFacet format.

Barium isotope fractionation during experimental formation of the double carbonate BaMn[CO3](2) at ambient temperature.

PubMed

Böttcher, Michael E; Geprägs, Patrizia; Neubert, Nadja; von Allmen, Katja; Pretet, Chloé; Samankassou, Elias; Nägler, Thomas F

2012-09-01

In this study, we present the first experimental results for stable barium (Ba) isotope ((137)Ba/(134)Ba) fractionation during low-temperature formation of the anhydrous double carbonate BaMn[CO(3)](2). This investigation is part of an ongoing work on Ba fractionation in the natural barium cycle. Precipitation at a temperature of 21±1°C leads to an enrichment of the lighter Ba isotope described by an enrichment factor of-0.11±0.06‰ in the double carbonate than in an aqueous barium-manganese(II) chloride/sodium bicarbonate solution, which is within the range of previous reports for synthetic pure BaCO (3) (witherite) formation.

The Inhibitation of Pb(IV) Oxide Formation in Chlorinated Water by Orthophosphate

EPA Science Inventory

Previous work showed that PbO₂ can form in water in the absence of phosphate. The analysis of many pipe scales and deposits removed from real DWDS has shown that PbO₂ is present in some cases and absent in others. High ORP has been shown to favor PbO

Obesity and Developmental Functioning among Children Aged 2-4 Years. National Poverty Center Working Paper Series #08-07

ERIC Educational Resources Information Center

Cawley, John; Spiess, C. Katharina

2008-01-01

In developed countries, obesity tends to be associated with worse labor market outcomes. One possible reason is that obesity leads to less human capital formation early in life. This paper investigates the association between obesity and the developmental functioning of children at younger ages (2-4 years) than ever previously examined. Data from…

[Protective role of autotypic contacts under cerebellar neural net injury by toxic doses of NO-generative compounds].

PubMed

Samosudova, N V; Reutov, V P; Larionova, N P; Chaĭlakhian, L M

2005-01-01

In the present work, cerebellar neural net injury was induced by toxic doses of NO-generative compound (NaNO2). A protective role of glial cells was revealed in such conditions. The present results were compared with those of the previous work concerning the action of high concentration glutamate on the frog cerebellum (Samosudova et al., 1996). In both cases we observed the appearance of spiral-like structures--"wrappers)"--involving several rows of transformed glial processes with smaller width and bridges connecting the inner sides of row (autotypic contact). A statistic analysis was made according to both previous and present data. We calculated the number and width of rows, and intervals between bridges depending on experimental conditions. As the injury increased (stimulation in the NO-presence), the row number in "wrappers" also increased, while the row width and intervals between bridges decreased. The presence of autotypic contacts in glial "wrappers" enables us to suppose the involvement of adhesive proteins--cadherins in its formation. The obtained data suggested that the formation of spiral structures--"wrappers" may be regarded as a compensative-adaptive reaction on the injury of cerebellar neural net glutamate and NO-generative compounds.

Stratigraphic framework and regional subsurface geology of upper Cretaceous through lower Eocene rocks in Wind River basin, Wyoming

DOE Office of Scientific and Technical Information (OSTI.GOV)

Hogle, D.G.; Jones, R.W.

1989-03-01

A detailed stratigraphic study of over 6000 m of Upper Cretaceous through lower Eocene sedimentary rocks in the Wind River basin. Wyoming, has refined and expanded previous work and conclusions. A much larger data base than previously available was assembled to include a correlation net of 325 geophysical well logs, 36 drill holes with palynological age dates, lithology logs of drill hoes, and limited surface exposures. The most significant results and conclusions from this study are summarized below. (1) The lower part of the Mesaverde Formation intertongues with marine sandstones and shales of the upper Cody Shale to the eastmore » and with marine sandstones of the lower Mesaverde Formation in the Big Horn basin to the north. (2) An unconformity between the Mesaverde and Fort Union Formations in the southwestern part of the basin can be traced into the subsurface. (3) During the latest Cretaceous and Paleocene, over 2100 m of Lance Formation and over 2700 m of Fort Union Formation were deposited in the northeastern part of the basin. Ponding during the Paleocene is demonstrated by correlation and subsurface mapping of over 900 m of shale and siltstone in the Waltman Shale Member of the Fort Union Formation. (4) The Lance and Fort Union Formations can be mapped in the subsurface throughout much of the basin. The Lance Formation pinches out in the western part of the basin. (5) Coal beds can be traced for short distances in the subsurface; coal bed occurrence is documented for the Mesaverde, lower Fort Union, and Meeteetse Formations in the southwestern, northern and central, and northwestern parts of the basin, respectively.« less

Effect of Sulfur Concentration and PH Conditions on Akaganeite Formation: Understanding Akaganeite Formation Conditions in Yellowknife Bay, Gale Crater, Mars

NASA Technical Reports Server (NTRS)

Fox, A.; Peretyazhko, T.; Sutter, B.; Niles, P.; Ming, D. W.; Morris, R. V.

2015-01-01

The Chemistry and Mineralogy Instrument (CHEMIN) on board the Mars Science Laboratory (MSL) Curiosity Rover identified minor amounts of akaganeite (beta-FeOOH) at Yellowknife Bay, Mars. There is also evidence for akaganeite at other localities on Mars from the Compact Reconnaissance Imaging Spectrometer for Mars (CRISM). Akaganeite is an iron(III) hydroxide with a hollandite- like structure and Cl in its tunnels. Terrestrial akaganeite usually forms in Cl-rich environments under acidic, oxidizing conditions. Previous studies of akaganeite have revealed that akaganeite formation is affected by the presence of sulfate (hereafter denoted as S. The prediction of circumneutral pH coupled with the detection of S at Yellowknife Bay dictate that work is needed to determine how S and pH together affect akaganeite formation. The goal of this work is to study how changes in both S concentration and pH influence akaganeite precipitation. Akaganeite formation was investigated at S/Cl molar ratios of 0, 0.017, 0.083, 0.17 and 0.33 at pH 1.5, 2, and 4. Results are anticipated to provide combined S concentration and pH constraints on akaganeite formation in Yellowknife Bay and elsewhere on Mars. Knowledge of solution pH and S concentrations can be utilized in understanding microbial habitability potential on the Martian surface.

Shock-and-Release to the Liquid-Vapor Phase Boundary: Experiments and Applications to Planetary Science

NASA Astrophysics Data System (ADS)

Stewart, Sarah

2017-06-01

Shock-induced vaporization was a common process during the end stages of terrestrial planet formation and transient features in extra-solar systems are attributed to recent giant impacts. At the Sandia Z Machine, my collaborators and I are conducting experiments to study the shock Hugoniot and release to the liquid-vapor phase boundary of major minerals in rocky planets. Current work on forsterite, enstatite and bronzite and previous results on silica, iron and periclase demonstrate that shock-induced vaporization played a larger role during planet formation than previously thought. I will provide an overview of the experimental results and describe how the data have changed our views of planetary impact events in our solar system and beyond. Sandia National Laboratories is a multiprogram laboratory managed and operated by Sandia Corporation, a wholly owned subsidiary of Lockheed Martin Corporation, for the U.S. Department of Energy's National Nuclear Security Administration under Contract No. DE-AC04-94AL85000. This work was performed under the auspices of the U.S. Department of Energy by Lawrence Livermore National Laboratory under Contract DE-AC52-07NA27344. This work is supported by the Z Fundamental Science Program at Sandia National Laboratories, DOE-NNSA Grant DE- NA0002937, NASA Grant # NNX15AH54G, and UC Multicampus-National Lab Collaborative Research and Training Grant #LFR-17-449059.

Does intrinsic motivation strengthen physical activity habit? Modeling relationships between self-determination, past behaviour, and habit strength.

PubMed

Gardner, Benjamin; Lally, Phillippa

2013-10-01

Habit formation is thought to aid maintenance of physical activity, but little research is available into determinants of habit strength aside from repeated performance. Previous work has shown that intrinsically motivated physical activity, underpinned by inherent satisfaction derived from activity, is more likely to be sustained. We explored whether this might reflect a tendency for self-determined activity to become more strongly habitual. A sample of 192 adults aged 18-30 completed measures of motivational regulation, intention, behaviour, and habit strength. Results showed that self-determined regulation interacted with past behaviour in predicting habit strength: prior action was more predictive of habit strength among more autonomously motivated participants. There was an unexpected direct effect of self-determined regulation on habit strength, independently of past behaviour. Findings offer possible directions for future habit formation work.

Recent Aspects on the Effect of Inclusion Characteristics on the Intragranular Ferrite Formation in Low Alloy Steels: A Review

NASA Astrophysics Data System (ADS)

Mu, Wangzhong; Jönsson, Pär Göran; Nakajima, Keiji

2017-04-01

Intragranular ferrite (IGF), which nucleates from specific inclusion surfaces in low alloy steels, is the desired microstructure to improve mechanical properties of steel such as the toughness. This microstructure is especially important in the coarse grain heat affected zone (CGHAZ) of weldments. The latest review paper focusing on the role of non-metallic inclusions in the IGF formation in steels has been reported by Sarma et al. in 2009 (ISIJ int., 49(2009), 1063-1074). In recent years, large amount of papers have been presented to investigate different issues of this topic. This paper mainly highlights the frontiers of experimental and theoretical investigations on the effects of inclusion characteristics, such as the composition, size distribution and number density, on the IGF formation in low carbon low-alloyed steels, undertaken by the group of Applied Process Metallurgy, KTH Royal Institute of Technology. Related results reported in previous studies are also introduced. Also, plausible future work regarding various items of IGF formation is mentioned in each section. This work aims to give a better control of improving the steel quality during casting and in the heat affected zone (HAZ) of weldment, according to the concept of oxide metallurgy.

Making It Work for Everyone: An Evolving Reference Service.

PubMed

Feldman, Jonquil D; Lopez, Emme; Gaspard, Christine S; Barton, Karen D; Barcenes, Luis F

2018-01-01

At an academic health science center, librarians identified problems, weaknesses, and strengths in reference services. The on-call reference schedule was discontinued and a question flowchart was developed for circulation staff. Only research questions were referred to librarians, who would respond if available. Circulation staff perceived the unscheduled, voluntary model was not working well for the patrons or the staff. After two months, the schedule was reinstated with a hybrid version of the previous on-call format. In the process of changing the service model, the library staff also underwent a cultural change.

Active Galactic Nucleus Feedback in an Elliptical Galaxy with the Most Updated AGN Physics. I. Low Angular Momentum Case

NASA Astrophysics Data System (ADS)

Yuan, Feng; Yoon, DooSoo; Li, Ya-Ping; Gan, Zhao-Ming; Ho, Luis C.; Guo, Fulai

2018-04-01

We investigate the effects of AGN feedback on the cosmological evolution of an isolated elliptical galaxy by performing two-dimensional high-resolution hydrodynamical numerical simulations. The inner boundary of the simulation is chosen so that the Bondi radius is resolved. Compared to previous works, the two accretion modes—namely, hot and cold, which correspond to different accretion rates and have different radiation and wind outputs—are carefully discriminated, and the feedback effects by radiation and wind in each mode are taken into account. The most updated AGN physics, including the descriptions of radiation and wind from the hot accretion flows and wind from cold accretion disks, are adopted. Physical processes like star formation and SNe Ia and II are taken into account. We study the AGN light curve, typical AGN lifetime, growth of the black hole mass, AGN duty cycle, star formation, and X-ray surface brightness of the galaxy. We compare our simulation results with observations and find general consistency. Comparisons with previous simulation works find significant differences, indicating the importance of AGN physics. The respective roles of radiation and wind feedback are examined, and it is found that they are different for different problems of interest, such as AGN luminosity and star formation. We find that it is hard to neglect any of them, so we suggest using the names “cold feedback mode” and “hot feedback mode” to replace the currently used ones.

Numerical Simulation of the Effect of 3D Needle Movement on Cavitation and Spray Formation in a Diesel Injector

NASA Astrophysics Data System (ADS)

Mandumpala Devassy, B.; Edelbauer, W.; Greif, D.

2015-12-01

Cavitation and its effect on spray formation and its dispersion play a crucial role in proper engine combustion and controlled emission. This study focuses on these effects in a typical common rail 6-hole diesel injector accounting for 3D needle movement and flow compressibility effects. Coupled numerical simulations using 1D and 3D CFD codes are used for this investigation. Previous studies in this direction have already presented a detailed structure of the adopted methodology. Compared to the previous analysis, the present study investigates the effect of 3D needle movement and cavitation on the spray formation for pilot and main injection events for a typical diesel engine operating point. The present setup performs a 3D compressible multiphase simulation coupled with a standalone 1D high pressure flow simulation. The simulation proceeds by the mutual communication between 1D and 3D solvers. In this work a typical common rail injector with a mini-sac nozzle is studied. The lateral and radial movement of the needle and its effect on the cavitation generation and the subsequent spray penetration are analyzed. The result indicates the effect of compressibility of the liquid on damping the needle forces, and also the difference in the spray penetration levels due to the asymmetrical flow field. Therefore, this work intends to provide an efficient and user-friendly engineering tool for simulating a complete fuel injector including spray propagation.

The Heats of Formation of SiCl+n, for n=1-4

NASA Technical Reports Server (NTRS)

Bauschlicher, Charles W., Jr.; Partridge, Harry; Arnold, James O. (Technical Monitor)

1997-01-01

The heats of formation of SiCl(sub n) and SiCl+(sub n), for n=1-4, have been determined using the G2(B3LYP/MP2/CC) approach. The results for the neutral systems are in very good agreement with previous work. High level calibration calculations show that ion results have about the same accuracy as the neutrals, and allow us to refine the G2(B3LYP/MP2/CC) values. The calculations show that the adiabatic IP of SiCl4 is about 7 kcal/mol smaller than the accepted value. Using a rigid rotor/harmonic oscillator approximation, the temperature dependence of the heat of formation, heat capacity, and entropy are computed for 300 to 4000 K and fit to a polynomial.

Monitoring Ion Track Formation Using In Situ RBS/c, ToF-ERDA, and HR-PIXE

NASA Astrophysics Data System (ADS)

Karlušić, Marko; Fazinić, Stjepko; Siketić, Zdravko; Tadić, Tonči; Cosic, Donny; Božičević-Mihalić, Iva; Zamboni, Ivana; Jakšić, Milko; Schleberger, Marika

2017-09-01

The aim of this work is to investigate feasibility of the ion beam analysis techniques for monitoring swift heavy ion track formation. First, use of the in situ Rutherford backscattering spectroscopy in channeling mode to observe damage build-up in quartz SiO2 after MeV heavy ion irradiation is demonstrated. Second, new results of the in situ grazing incidence time-of-flight elastic recoil detection analysis used for monitoring the surface elemental composition during ion tracks formation in various materials are presented. Ion tracks were found on SrTiO3, quartz SiO2, a-SiO2 and muscovite mica surfaces by atomic force microscopy, but in contrast to our previous studies on GaN and TiO2, surface stoichiometry remained unchanged.

UNICON: A Powerful and Easy-to-Use Compound Library Converter.

PubMed

Sommer, Kai; Friedrich, Nils-Ole; Bietz, Stefan; Hilbig, Matthias; Inhester, Therese; Rarey, Matthias

2016-06-27

The accurate handling of different chemical file formats and the consistent conversion between them play important roles for calculations in complex cheminformatics workflows. Working with different cheminformatic tools often makes the conversion between file formats a mandatory step. Such a conversion might become a difficult task in cases where the information content substantially differs. This paper describes UNICON, an easy-to-use software tool for this task. The functionality of UNICON ranges from file conversion between standard formats SDF, MOL2, SMILES, PDB, and PDBx/mmCIF via the generation of 2D structure coordinates and 3D structures to the enumeration of tautomeric forms, protonation states, and conformer ensembles. For this purpose, UNICON bundles the key elements of the previously described NAOMI library in a single, easy-to-use command line tool.

Simultaneous nanocalorimetry and fast XRD measurements to study the silicide formation in Pd/a-Si bilayers.

PubMed

Molina-Ruiz, Manel; Ferrando-Villalba, Pablo; Rodríguez-Tinoco, Cristian; Garcia, Gemma; Rodríguez-Viejo, Javier; Peral, Inma; Lopeandía, Aitor F

2015-05-01

The use of a membrane-based chip nanocalorimeter in a powder diffraction beamline is described. Simultaneous wide-angle X-ray scattering and scanning nanocalorimetric measurements are performed on a thin-film stack of palladium/amorphous silicon (Pd/a-Si) at heating rates from 0.1 to 10 K s(-1). The nanocalorimeter works under a power-compensation scheme previously developed by the authors. Kinetic and structural information of the consumed and created phases can be obtained from the combined techniques. The formation of Pd2Si produces a broad calorimetric peak that contains overlapping individual processes. It is shown that Pd consumption precedes the formation of the crystalline Pd2Si phase and that the crystallite size depends on the heating rate of the experiment.

Extracellular DNA facilitates the formation of functional amyloids in Staphylococcus aureus biofilms.

PubMed

Schwartz, Kelly; Ganesan, Mahesh; Payne, David E; Solomon, Michael J; Boles, Blaise R

2016-01-01

Persistent staphylococcal infections often involve surface-associated communities called biofilms. Staphylococcus aureus biofilm development is mediated by the co-ordinated production of the biofilm matrix, which can be composed of polysaccharides, extracellular DNA (eDNA) and proteins including amyloid fibers. The nature of the interactions between matrix components, and how these interactions contribute to the formation of matrix, remain unclear. Here we show that the presence of eDNA in S. aureus biofilms promotes the formation of amyloid fibers. Conditions or mutants that do not generate eDNA result in lack of amyloids during biofilm growth despite the amyloidogeneic subunits, phenol soluble modulin peptides, being produced. In vitro studies revealed that the presence of DNA promotes amyloid formation by PSM peptides. Thus, this work exposes a previously unacknowledged interaction between biofilm matrix components that furthers our understanding of functional amyloid formation and S. aureus biofilm biology. © 2015 The Authors. Molecular Microbiology published by John Wiley & Sons Ltd.

Identity formation and motivation of new faculty developers: A replication study in a resource constrained university.

PubMed

O'Sullivan, Patricia S; Mkony, Charles; Beard, Jessica; Irby, David M

2016-09-01

Previous studies on the identity development and motivation of faculty developers have occurred with seasoned developers in a research-rich environment. We sought to determine if the findings of those studies could be replicated with novice faculty developers in a resource-constrained environment. We interviewed 15 novice faculty developers from Muhimbili University of Health and Allied Sciences (MUHAS) who, at the time, had led faculty development activities for no more than two years. We conducted a qualitative analysis sensitized by the previous findings. Results were very similar to the previous work. The developers described compartmentalized, hierarchical, and merged identities. The impact was on their teaching as well as on others at MUHAS and on the institution itself. The motivations related to mastery, purpose, duty, satisfaction, and relatedness. This replication led us to conclude that identity development as a faculty developer occurs even in novice developers who do faculty development as only part of their work and despite constrained resources and a different culture. These developers find the work richly rewarding and their motivations benefit the institution. This body of research highlights how faculty development provides benefits to the institution as well as engaging career opportunities.

Diagnostics of Carbon Nanotube Formation in a Laser Produced Plume: An Investigation of the Metal Catalyst by Laser Ablation Atomic Fluorescence Spectroscopy

NASA Technical Reports Server (NTRS)

deBoer, Gary; Scott, Carl

2003-01-01

Carbon nanotubes, elongated molecular tubes with diameters of nanometers and lengths in microns, hold great promise for material science. Hopes for super strong light-weight material to be used in spacecraft design is the driving force behind nanotube work at JSC. The molecular nature of these materials requires the appropriate tools for investigation of their structure, properties, and formation. The mechanism of nanotube formation is of particular interest because it may hold keys to controlling the formation of different types of nanotubes and allow them to be produced in much greater quantities at less cost than is currently available. This summer's work involved the interpretation of data taken last summer and analyzed over the academic year. The work involved diagnostic studies of carbon nanotube formation processes occurring in a laser-produced plume. Laser ablation of metal doped graphite to produce a plasma plume in which carbon nanotubes self assemble is one method of making carbon nanotube. The laser ablation method is amenable to applying the techniques of laser spectroscopy, a powerful tool for probing the energies and dynamics of atomic and molecular species. The experimental work performed last summer involved probing one of the metal catalysts, nickel, by laser induced fluorescence. The nickel atom was studied as a function of oven temperature, probe laser wavelength, time after ablation, and position in the laser produced plume. This data along with previously obtained data on carbon was analyzed over the academic year. Interpretations of the data were developed this summer along with discussions of future work. The temperature of the oven in which the target is ablated greatly influences the amount of material ablated and the propagation of the plume. The ablation conditions and the time scale of atomic and molecular lifetimes suggest that initial ablation of the metal doped carbon target results in atomic and small molecular species. The metal atoms survive for several milliseconds while the gaseous carbon atoms and small molecules nucleate more rapidly. Additional experiments and the development of in situ methods for carbon nanotube detection would allow these results to be interpreted from the perspective of carbon nanotube formation.

Examining the Displacement of Energy during Formation of Shear Bands

NASA Astrophysics Data System (ADS)

Hernandez, M.; Hilley, G. E.

2011-12-01

M.X. Hernandez, G. Hilley Department of Geological and Environmental Sciences, Stanford University, Stanford, CA This study has originated from an experimental (sandbox) setting that we have previously used to document the link between the kinematics and dynamics of deforming sand in the verge of frictional failure. Our initial experimental setting included a load control system that allowed us to track the changes in load, that when applied to the sand, deform and generate individual shear bands or localized faults. Over the course of earlier experiments, three cameras located at different positions outside the sandbox monitored the movement throughout the run. This current stage of analysis includes using computer programs such as QuickTime to create image sequences of the shear band formation, and Microsoft Excel to visually graph and plot each data sequence. This allows us to investigate the correlation between changes in work measured within our experiments, the construction of topography, slip along shear bands, and the creation of new shear bands. We observed that the measured load generally increased during the experiment to maintain a constant displacement rate as the sand wedge thickened and modeled topography increased. Superposed on this trend were periodic drops in load that appeared temporally coincident with the formation of shear bands in the sand. Using the time series of the loads applied during the experiment, changes in the position of the backstop over time, and the loads measured before, during, and after the time of each shear band formation, we are examining the fraction of the apples work that is absorbed by friction and shear band formation, and what fraction of the apples work is expended in increasing the potential energy of the thickening sand wedge. Our results indicate that before the formation of a continuous shear band, the rate of work done on the sand by the experimental apparatus decreases. This may suggest that once formed, work done against friction in the sand is significantly less than that expended in forming shear bands and thickening the sand wedge.

Defense Waste Processing Facility Nitric- Glycolic Flowsheet Chemical Process Cell Chemistry: Part 2

DOE Office of Scientific and Technical Information (OSTI.GOV)

Zamecnik, J.; Edwards, T.

The conversions of nitrite to nitrate, the destruction of glycolate, and the conversion of glycolate to formate and oxalate were modeled for the Nitric-Glycolic flowsheet using data from Chemical Process Cell (CPC) simulant runs conducted by Savannah River National Laboratory (SRNL) from 2011 to 2016. The goal of this work was to develop empirical correlation models to predict these values from measureable variables from the chemical process so that these quantities could be predicted a-priori from the sludge or simulant composition and measurable processing variables. The need for these predictions arises from the need to predict the REDuction/OXidation (REDOX) statemore » of the glass from the Defense Waste Processing Facility (DWPF) melter. This report summarizes the work on these correlations based on the aforementioned data. Previous work on these correlations was documented in a technical report covering data from 2011-2015. This current report supersedes this previous report. Further refinement of the models as additional data are collected is recommended.« less

Effect of microgravity on plant growth

NASA Technical Reports Server (NTRS)

Lewis, Norman G.

1994-01-01

The overall goal of this research is to determine the effect of microgravity proper on plant growth (metabolism and cell wall formation). In addressing this goal, the work conducted during this grant period was divided into three components: analyses of various plant tissues previously grown in space aboard MIR Space Station; analyses of wheat tissues grown on Shuttle flight STS-51; and Phenylpropanoid metabolism and plant cell wall synthesis (earth-based investigations).

Lateral water flux in the unsaturated zone: A mechanism for the formation of spatial soil heterogeneity in a headwater catchment

Treesearch

John P. Gannon; Kevin J. McGuire; Scott W. Bailey; Rebecca R. Bourgault; Donald S. Ross

2017-01-01

Measurements of soil water potential and water table fluctuations suggest that morphologically distinct soils in a headwater catchment at the Hubbard Brook Experimental Forest in New Hampshire formed as a result of variations in saturated and unsaturated hydrologic fluxes in the mineral soil. Previous work showed that each group of these soils had distinct water table...

Optimization of Well Configuration for a Sedimentary Enhanced Geothermal Reservoir

DOE Office of Scientific and Technical Information (OSTI.GOV)

Zhou, Mengnan; Cho, JaeKyoung; Zerpa, Luis E.

The extraction of geothermal energy in the form of hot water from sedimentary rock formations could expand the current geothermal energy resources toward new regions. From previous work, we observed that sedimentary geothermal reservoirs with relatively low permeability would require the application of enhancement techniques (e.g., well hydraulic stimulation) to achieve commercial production/injection rates. In this paper we extend our previous work to develop a methodology to determine the optimum well configuration that maximizes the hydraulic performance of the geothermal system. The geothermal systems considered consist of one vertical well doublet system with hydraulic fractures, and three horizontal well configurationsmore » with open-hole completion, longitudinal fractures and transverse fractures, respectively. A commercial thermal reservoir simulation is used to evaluate the geothermal reservoir performance using as design parameters the well spacing and the length of the horizontal wells. The results obtained from the numerical simulations are used to build a response surface model based on the multiple linear regression method. The optimum configuration of the sedimentary geothermal systems is obtained from the analysis of the response surface model. The proposed methodology is applied to a case study based on a reservoir model of the Lyons sandstone formation, located in the Wattenberg field, Denver-Julesburg basin, Colorado.« less

Neural activity reveals perceptual grouping in working memory.

PubMed

Rabbitt, Laura R; Roberts, Daniel M; McDonald, Craig G; Peterson, Matthew S

2017-03-01

There is extensive evidence that the contralateral delay activity (CDA), a scalp recorded event-related brain potential, provides a reliable index of the number of objects held in visual working memory. Here we present evidence that the CDA not only indexes visual object working memory, but also the number of locations held in spatial working memory. In addition, we demonstrate that the CDA can be predictably modulated by the type of encoding strategy employed. When individual locations were held in working memory, the pattern of CDA modulation mimicked previous findings for visual object working memory. Specifically, CDA amplitude increased monotonically until working memory capacity was reached. However, when participants were instructed to group individual locations to form a constellation, the CDA was prolonged and reached an asymptote at two locations. This result provides neural evidence for the formation of a unitary representation of multiple spatial locations. Published by Elsevier B.V.

Macroscopic domain formation during cooling in the platelet plasma membrane: an issue of low cholesterol content

PubMed Central

Bali, Rachna; Savino, Laura; Ramirez, Diego A.; Tsvetkova, Nelly M.; Bagatolli, Luis; Tablin, Fern; Crowe, John H.; Leidy, Chad

2009-01-01

There has been ample debate on whether cell membranes can present macroscopic lipid domains as predicted by three-component phase diagrams obtained by fluorescence microscopy. Several groups have argued that membrane proteins and interactions with the cytoskeleton inhibit the formation of large domains. In contrast, some polarizable cells do show large regions with qualitative differences in lipid fluidity. It is important to ask more precisely, based on the current phase diagrams, under what conditions would large domains be expected to form in cells. In this work we study the thermotropic phase behavior of the platelet plasma membrane by FTIR, and compare it to a POPC/Sphingomyelin/Cholesterol model representing the outer leaflet composition. We find that this model closely reflects the platelet phase behavior. Previous work has shown that the platelet plasma membrane presents inhomogeneous distribution of DiI18:0 at 24°C, but not at 37°C, which suggests the formation of macroscopic lipid domains at low temperatures. We show by fluorescence microscopy, and by comparison with published phase diagrams, that the outer leaflet model system enters the macroscopic domain region only at the lower temperature. In addition, the low cholesterol content in platelets (~15 mol %), appears to be crucial for the formation of large domains during cooling. PMID:19341703

Prophages and Growth Dynamics Confound Experimental Results with Antibiotic-Tolerant Persister Cells

PubMed Central

Fino, Cinzia; Sørensen, Michael A.; Semsey, Szabolcs

2017-01-01

ABSTRACT Bacterial persisters are phenotypic variants that survive antibiotic treatment in a dormant state and can be formed by multiple pathways. We recently proposed that the second messenger (p)ppGpp drives Escherichia coli persister formation through protease Lon and activation of toxin-antitoxin (TA) modules. This model found considerable support among researchers studying persisters but also generated controversy as part of recent debates in the field. In this study, we therefore used our previous work as a model to critically examine common experimental procedures to understand and overcome the inconsistencies often observed between results of different laboratories. Our results show that seemingly simple antibiotic killing assays are very sensitive to variations in culture conditions and bacterial growth phase. Additionally, we found that some assay conditions cause the killing of antibiotic-tolerant persisters via induction of cryptic prophages. Similarly, the inadvertent infection of mutant strains with bacteriophage ϕ80, a notorious laboratory contaminant, apparently caused several of the phenotypes that we reported in our previous studies. We therefore reconstructed all infected mutants and probed the validity of our model of persister formation in a refined assay setup that uses robust culture conditions and unravels the dynamics of persister cells through all bacterial growth stages. Our results confirm the importance of (p)ppGpp and Lon but no longer support a role of TA modules in E. coli persister formation under unstressed conditions. We anticipate that the results and approaches reported in our study will lay the ground for future work in the field. PMID:29233898

Cluster formation and percolation in ethanol-water mixtures

NASA Astrophysics Data System (ADS)

Gereben, Orsolya; Pusztai, László

2017-10-01

Results of systematic molecular dynamics studies of ethanol-water mixtures, over the entire concentration range, were reported previously that agree with experimental X-ray diffraction data. These simulated systems are analyzed in this work to examine cluster formation and percolation, using four different hydrogen bond definitions. Percolation analyses revealed that each mixture (even the one containing 80 mol% ethanol) is above the 3D percolation threshold, with fractal dimensions, df, between 2.6 and 2.9, depending on concentration. Monotype water cluster formation was also studied in the mixtures: 3D water percolation can be found in systems with less than 40 mol% ethanol, with fractal dimensions between 2.53 and 2.84. These observations can be put in parallel with experimental data on some thermodynamic quantities, such as the excess partial molar enthalpy and entropy.

History of Presolar Grains

NASA Technical Reports Server (NTRS)

Bernatowicz, Thomas J.

2005-01-01

Papers on the History of Presolar Grains. This has been a very productive period in which much of the laboratory work conducted in the previous year and during this funding cycle were brought to completion. In the last year we have published or submitted for peer review 4 research papers, 4 review papers, and 11 abstracts in research areas supported under this grant. Brief synopses of the results of the research papers are presented, followed by short summaries of the topics discussed in the review papers. Several areas of research are of course being actively pursued, and the appended list of abstracts gives citations to this ongoing work. In a paper submitted to the Astrophysical Journal, the results of an investigation into the physical conditions in the mass outflows of asymptotic giant branch (AGB) carbon stars that are required for the formation of micron-sized presolar graphite grains, with and without previously formed internal crystals of titanium carbide (TIC) are reported.

Cryptococcus neoformans can form titan-like cells in vitro in response to multiple signals.

PubMed

Trevijano-Contador, Nuria; de Oliveira, Haroldo Cesar; García-Rodas, Rocío; Rossi, Suélen Andreia; Llorente, Irene; Zaballos, Ángel; Janbon, Guilhem; Ariño, Joaquín; Zaragoza, Óscar

2018-05-01

Cryptococcus neoformans is an encapsulated pathogenic yeast that can change the size of the cells during infection. In particular, this process can occur by enlarging the size of the capsule without modifying the size of the cell body, or by increasing the diameter of the cell body, which is normally accompanied by an increase of the capsule too. This last process leads to the formation of cells of an abnormal enlarged size denominated titan cells. Previous works characterized titan cell formation during pulmonary infection but research on this topic has been hampered due to the difficulty to obtain them in vitro. In this work, we describe in vitro conditions (low nutrient, serum supplemented medium at neutral pH) that promote the transition from regular to titan-like cells. Moreover, addition of azide and static incubation of the cultures in a CO2 enriched atmosphere favored cellular enlargement. This transition occurred at low cell densities, suggesting that the process was regulated by quorum sensing molecules and it was independent of the cryptococcal serotype/species. Transition to titan-like cell was impaired by pharmacological inhibition of PKC signaling pathway. Analysis of the gene expression profile during the transition to titan-like cells showed overexpression of enzymes involved in carbohydrate metabolism, as well as proteins from the coatomer complex, and related to iron metabolism. Indeed, we observed that iron limitation also induced the formation of titan cells. Our gene expression analysis also revealed other elements involved in titan cell formation, such as calnexin, whose absence resulted in appearance of abnormal large cells even in regular rich media. In summary, our work provides a new alternative method to investigate titan cell formation devoid the bioethical problems that involve animal experimentation.

X-Ray Probes of Cosmic Star-Formation History

NASA Technical Reports Server (NTRS)

Ghosh, Pranab; White, Nicholas E.

2001-01-01

In a previous paper we point out that the X-ray luminosity L(sub x) of a galaxy is driven by the evolution of its X-ray binary population and that the profile of L(sub x) with redshift can both serve as a diagnostic probe of the Star Formation Rate (SFR) profile and constrain evolutionary models for X-ray binaries. We update our previous work using a suite of more recently developed SFR profiles that span the currently plausible range. The first Chandra deep imaging results on L(sub x)-evolution are beginning to probe the SFR profile of bright spirals and the early results are consistent with predictions based on current SFR models. Using these new SFR profiles the resolution of the "birthrate problem" of lowmass X-ray binaries (LMXBs) and recycled, millisecond pulsars in terms of an evolving global SFR is more complete. We also discuss the possible impact of the variations in the SFR profile of individual galaxies.

DOE Office of Scientific and Technical Information (OSTI.GOV)

Zhukhovitskii, D. I., E-mail: dmr@ihed.ras.ru

The vapor–liquid nucleation in a dense Lennard-Jones system is studied analytically and numerically. A solution of the nucleation kinetic equations, which includes the elementary processes of condensation/evaporation involving the lightest clusters, is obtained, and the nucleation rate is calculated. Based on the equation of state for the cluster vapor, the pre-exponential factor is obtained. The latter diverges as a spinodal is reached, which results in the nucleation enhancement. The work of critical cluster formation is calculated using the previously developed two-parameter model (TPM) of small clusters. A simple expression for the nucleation rate is deduced and it is shown thatmore » the work of cluster formation is reduced for a dense vapor. This results in the nucleation enhancement as well. To verify the TPM, a simulation is performed that mimics a steady-state nucleation experiments in the thermal diffusion cloud chamber. The nucleating vapor with and without a carrier gas is simulated using two different thermostats for the monomers and clusters. The TPM proves to match the simulation results of this work and of other studies.« less

The Effect of Fluoroethylene Carbonate as an Additive on the Solid Electrolyte Interphase on Silicon Lithium-Ion Electrodes

DOE PAGES

Schroder, Kjell; Li, Juchuan; Dudney, Nancy J.; ...

2015-08-03

Fluoroethylene carbonate (FEC) has become a standard electrolyte additive for use with silicon negative electrodes, but how FEC affects solid electrolyte interphase (SEI) formation on the silicon anode’s surface is still not well understood. Herein, SEI formed from LiPF6-based carbonate electrolytes, with and without FEC, were investigated on 50 nm thick amorphous silicon thin film electrodes to understand the role of FEC on silicon electrode surface reactions. In contrast to previous work, anhydrous and anoxic techniques were used to prevent air and moisture contamination of prepared SEI films. This allowed for accurate characterization of the SEI structure and composition bymore » X-ray photoelectron spectroscopy and time-of-flight secondary ion mass spectrometry depth profiling. These results show that FEC reduction leads to fluoride ion and LiF formation, consistent with previous computational and experimental results. Surprisingly, we also find that these species decrease lithium-ion solubility and increase the reactivity of the silicon surface. We conclude that the effectiveness of FEC at improving the Coulombic efficiency and capacity retention is due to fluoride ion formation from reduction of the electrolyte, which leads to the chemical attack of any silicon-oxide surface passivation layers and the formation of a kinetically stable SEI comprising predominately lithium fluoride and lithium oxide.« less

Klebsiella pneumoniae yfiRNB operon affects biofilm formation, polysaccharide production and drug susceptibility.

PubMed

Huertas, Mónica G; Zárate, Lina; Acosta, Iván C; Posada, Leonardo; Cruz, Diana P; Lozano, Marcela; Zambrano, María M

2014-12-01

Klebsiella pneumoniae is an opportunistic pathogen important in hospital-acquired infections, which are complicated by the rise of drug-resistant strains and the capacity of cells to adhere to surfaces and form biofilms. In this work, we carried out an analysis of the genes in the K. pneumoniae yfiRNB operon, previously implicated in biofilm formation. The results indicated that in addition to the previously reported effect on type 3 fimbriae expression, this operon also affected biofilm formation due to changes in cellulose as part of the extracellular matrix. Deletion of yfiR resulted in enhanced biofilm formation and an altered colony phenotype indicative of cellulose overproduction when grown on solid indicator media. Extraction of polysaccharides and treatment with cellulase were consistent with the presence of cellulose in biofilms. The enhanced cellulose production did not, however, correlate with virulence as assessed using a Caenorhabditis elegans assay. In addition, cells bearing mutations in genes of the yfiRNB operon varied with respect to the WT control in terms of susceptibility to the antibiotics amikacin, ciprofloxacin, imipenem and meropenem. These results indicated that the yfiRNB operon is implicated in the production of exopolysaccharides that alter cell surface characteristics and the capacity to form biofilms--a phenotype that does not necessarily correlate with properties related with survival, such as resistance to antibiotics. © 2014 The Authors.

Bio-inspired design of ice-retardant devices based on benthic marine invertebrates: the effect of surface texture

PubMed Central

Mehrabani, Homayun; Ray, Neil; Tse, Kyle

2014-01-01

Growth of ice on surfaces poses a challenge for both organisms and for devices that come into contact with liquids below the freezing point. Resistance of some organisms to ice formation and growth, either in subtidal environments (e.g., Antarctic anchor ice), or in environments with moisture and cold air (e.g., plants, intertidal) begs examination of how this is accomplished. Several factors may be important in promoting or mitigating ice formation. As a start, here we examine the effect of surface texture alone. We tested four candidate surfaces, inspired by hard-shelled marine invertebrates and constructed using a three-dimensional printing process. We examined sub-polar marine organisms to develop sample textures and screened them for ice formation and accretion in submerged conditions using previous methods for comparison to data for Antarctic organisms. The sub-polar organisms tested were all found to form ice readily. We also screened artificial 3-D printed samples using the same previous methods, and developed a new test to examine ice formation from surface droplets as might be encountered in environments with moist, cold air. Despite limitations inherent to our techniques, it appears surface texture plays only a small role in delaying the onset of ice formation: a stripe feature (corresponding to patterning found on valves of blue mussels, Mytilus edulis, or on the spines of the Antarctic sea urchin Sterechinus neumayeri) slowed ice formation an average of 25% compared to a grid feature (corresponding to patterning found on sub-polar butterclams, Saxidomas nuttalli). The geometric dimensions of the features have only a small (∼6%) effect on ice formation. Surface texture affects ice formation, but does not explain by itself the large variation in ice formation and species-specific ice resistance observed in other work. This suggests future examination of other factors, such as material elastic properties and surface coatings, and their interaction with surface pattern. PMID:25279268

A novel pH-responsive hydrogel-based on calcium alginate engineered by the previous formation of polyelectrolyte complexes (PECs) intended to vaginal administration.

PubMed

Ferreira, Natália Noronha; Perez, Taciane Alvarenga; Pedreiro, Liliane Neves; Prezotti, Fabíola Garavello; Boni, Fernanda Isadora; Cardoso, Valéria Maria de Oliveira; Venâncio, Tiago; Gremião, Maria Palmira Daflon

2017-10-01

This work aimed to develop a calcium alginate hydrogel as a pH responsive delivery system for polymyxin B (PMX) sustained-release through the vaginal route. Two samples of sodium alginate from different suppliers were characterized. The molecular weight and M/G ratio determined were, approximately, 107 KDa and 1.93 for alginate_S and 32 KDa and 1.36 for alginate_V. Polymer rheological investigations were further performed through the preparation of hydrogels. Alginate_V was selected for subsequent incorporation of PMX due to the acquisition of pseudoplastic viscous system able to acquiring a differential structure in simulated vaginal microenvironment (pH 4.5). The PMX-loaded hydrogel (hydrogel_PMX) was engineered based on polyelectrolyte complexes (PECs) formation between alginate and PMX followed by crosslinking with calcium chloride. This system exhibited a morphology with variable pore sizes, ranging from 100 to 200 μm and adequate syringeability. The hydrogel liquid uptake ability in an acid environment was minimized by the previous PECs formation. In vitro tests evidenced the hydrogels mucoadhesiveness. PMX release was pH-dependent and the system was able to sustain the release up to 6 days. A burst release was observed at pH 7.4 and drug release was driven by an anomalous transport, as determined by the Korsmeyer-Peppas model. At pH 4.5, drug release correlated with Weibull model and drug transport was driven by Fickian diffusion. The calcium alginate hydrogels engineered by the previous formation of PECs showed to be a promising platform for sustained release of cationic drugs through vaginal administration.

Star Formation in Orion A : Towards Resolved Maps of SFR and SFE

NASA Astrophysics Data System (ADS)

Großschedl, Josefa; Alves, J.; Ascenso, J.; Bouy, H.

2017-06-01

The OrionA GMC is a benchmark for studying star formation. Our goal is to construct a map of SFR and SFE (with Herschel) across the entire complex, for which it is critical to have a reliable and complete sample of YSOs. In this work we present a refined catalogue of YSOs, making use of a new deep NIR survey with VISTA, complemented with archival data. The survey allows us to rule out false positives from previous samples (galaxies, cloud edges, etc.). To add new candidates we use MIR data from WISE for areas not covered by Spitzer to get a complete census of the spatial distribution of YSOs.

Re-evaluation of rhodopsin's relaxation kinetics determined from femtosecond stimulated Raman lineshapes.

PubMed

McCamant, David W

2011-07-28

This work presents a theoretical treatment of the vibrational line shape generated in a femtosecond stimulated Raman spectroscopy (FSRS) experiment under conditions in which the probed vibration undergoes a significant frequency shift during its free induction decay. This theory is applied to simulate the FSRS lineshapes previously observed in rhodopsin (Kukura et al. Science 2005, 310, 1006). The previously determined relaxation times for formation of the trans-photoproduct of rhodopsin were calculated using an incorrect equation for the time dependence of the observed frequency shifts. Here the data are reanalyzed by calculation of the corrected frequency sweep occurring during the vibrational free induction decay. It is shown that the calculated frequency shifts and general conclusions of the original work are sound but that the coherent vibrational frequency shifts of the C(10), C(11), and C(12) hydrogen-out-of-plane vibrations occur with a 140 fs time constant rather than the previously reported 325 fs time constant. This time constant provides an important constraint for models of the dynamics of the cis to trans isomerization process. © 2011 American Chemical Society

Monitoring Ion Track Formation Using In Situ RBS/c, ToF-ERDA, and HR-PIXE.

PubMed

Karlušić, Marko; Fazinić, Stjepko; Siketić, Zdravko; Tadić, Tonči; Cosic, Donny Domagoj; Božičević-Mihalić, Iva; Zamboni, Ivana; Jakšić, Milko; Schleberger, Marika

2017-09-06

The aim of this work is to investigate the feasibility of ion beam analysis techniques for monitoring swift heavy ion track formation. First, the use of the in situ Rutherford backscattering spectrometry in channeling mode to observe damage build-up in quartz SiO₂ after MeV heavy ion irradiation is demonstrated. Second, new results of the in situ grazing incidence time-of-flight elastic recoil detection analysis used for monitoring the surface elemental composition during ion tracks formation in various materials are presented. Ion tracks were found on SrTiO₃, quartz SiO₂, a-SiO₂, and muscovite mica surfaces by atomic force microscopy, but in contrast to our previous studies on GaN and TiO₂, surface stoichiometry remained unchanged. Third, the usability of high resolution particle induced X-ray spectroscopy for observation of electronic dynamics during early stages of ion track formation is shown.

Monitoring Ion Track Formation Using In Situ RBS/c, ToF-ERDA, and HR-PIXE

PubMed Central

Karlušić, Marko; Fazinić, Stjepko; Siketić, Zdravko; Tadić, Tonči; Cosic, Donny Domagoj; Božičević-Mihalić, Iva; Zamboni, Ivana; Jakšić, Milko; Schleberger, Marika

2017-01-01

The aim of this work is to investigate the feasibility of ion beam analysis techniques for monitoring swift heavy ion track formation. First, the use of the in situ Rutherford backscattering spectrometry in channeling mode to observe damage build-up in quartz SiO2 after MeV heavy ion irradiation is demonstrated. Second, new results of the in situ grazing incidence time-of-flight elastic recoil detection analysis used for monitoring the surface elemental composition during ion tracks formation in various materials are presented. Ion tracks were found on SrTiO3, quartz SiO2, a-SiO2, and muscovite mica surfaces by atomic force microscopy, but in contrast to our previous studies on GaN and TiO2, surface stoichiometry remained unchanged. Third, the usability of high resolution particle induced X-ray spectroscopy for observation of electronic dynamics during early stages of ion track formation is shown. PMID:28878186

Integrating fluid dynamic and biologic effects on staphylococci bacteria biofilms

NASA Astrophysics Data System (ADS)

Sherman, Erica; Endres, Jennifer; Bayles, Kenneth; Wei, Timothy

2017-11-01

Staphylococcus aureus bacteria are able to form biofilms and distinctive tower structures that facilitate their ability to tolerate treatment and to spread within the human body. The formation of towers, which break off, get carried downstream and serve to initiate biofilms in other parts of the body are of particular interest here. In previous work on biofilm growth and evolution in steady, laminar microchannel flows, it has been established that tower formation occurs around a very limited range of applied shear stresses centered on 0.6 dynes/cm2. Quantifying cell density characteristics as a function of time during biofilm formation reveals indicators of tower development hours before towers actually form and become visible. The next step in this research is to explore biological factors that might explain why this specific shear is so important. Additional studies with mutants, e.g. ica-A, that have been tied to tower formation have been conducted. The shear dependence of these mutants and their correlation to the behavior of wild type S. aureus is examined.

Use of a Land Streamer System to Image the Potomac Formation in Northern Delaware

NASA Astrophysics Data System (ADS)

Velez, C. C.; McLaughlin, P. P.; McGeary, S.; Sargent, S. L.

2008-12-01

A land streamer system, an alternative to conventional seismic acquisition equipment for collecting large amounts of seismic reflection data in urbanized and semi-urbanized areas, was used to collect a network of high-resolution seismic reflection data in northern Delaware. The principal objective of this work is to image the distribution and geometry of sand bodies in the Cretaceous (Aptian to Cenomanian) non-marine deposits of the Potomac Formation. The Potomac Formation includes the most important confined aquifers in the Coastal Plain of northern Delaware. Previous studies indicate these deposits onlap Paleozoic basement at depths from 115 m to 400 m in the study area and are truncated by an unconformity. Previous descriptions of sedimentary facies from nearby cores and geophysical logs indicate that the Potomac Formation is a predominantly fine-grained alluvial unit with laterally discontinuous fluvial sand bodies, resulting in a "labyrinth style heterogeneity" for aquifer facies. The 20-km seismic dataset collected for this study indicates that land-streamer seismic methods can be used in this area to image the subsurface geology as shallow as 18 m and as deep as the basement at 315 m. The theoretical quarter wavelength of the seismic dataset suggests a resolution of 2 to 4 m, which is sufficient to resolve aquifer sands in the Potomac Formation ranging from 10 to 20 m thick. Final processed seismic sections will be integrated with geophysical logs and core data to provide a robust 2-D dataset that will allow assessment of current concepts for facies and correlations in the Potomac Formation, thus benefiting understanding of critical ground-water resources.

Exploring simulated early star formation in the context of the ultrafaint dwarf galaxies

NASA Astrophysics Data System (ADS)

Corlies, Lauren; Johnston, Kathryn V.; Wise, John H.

2018-04-01

Ultrafaint dwarf galaxies (UFDs) are typically assumed to have simple, stellar populations with star formation ending at reionization. Yet as the observations of these galaxies continue to improve, their star formation histories (SFHs) are revealed to be more complicated than previously thought. In this paper, we study how star formation, chemical enrichment, and mixing proceed in small, dark matter haloes at early times using a high-resolution, cosmological, hydrodynamical simulation. The goals are to inform the future use of analytic models and to explore observable properties of the simulated haloes in the context of UFD data. Specifically, we look at analytic approaches that might inform metal enrichment within and beyond small galaxies in the early Universe. We find that simple assumptions for modelling the extent of supernova-driven winds agree with the simulation on average, whereas inhomogeneous mixing and gas flows have a large effect on the spread in simulated stellar metallicities. In the context of the UFDs, this work demonstrates that simulations can form haloes with a complex SFH and a large spread in the metallicity distribution function within a few hundred Myr in the early Universe. In particular, bursty and continuous star formation are seen in the simulation and both scenarios have been argued from the data. Spreads in the simulated metallicities, however, remain too narrow and too metal-rich when compared to the UFDs. Future work is needed to help reduce these discrepancies and advance our interpretation of the data.

Formation of Bidisperse Particle Clouds

NASA Astrophysics Data System (ADS)

Er, Jenn Wei; Zhao, Bing; Law, Adrian W. K.; Adams, E. Eric

2014-11-01

When a group of dense particles is released instantaneously into water, their motion has been conceptualized as a circulating particle thermal (Ruggerber 2000). However, Wen and Nacamuli (1996) observed the formation of particle clumps characterized by a narrow, fast moving core shedding particles into wakes. They observed the clump formation even for particles in the non-cohesive range as long as the source Rayleigh number was large (Ra > 1E3) or equivalently the source cloud number (Nc) was small (Nc < 3.2E2). This physical phenomenon has been investigated by Zhao et al. (2014) through physical experiments. They proposed the theoretical support for Nc dependence and categorized the formation processes into cloud formation, transitional regime and clump formation. Previous works focused mainly on the behavior of monodisperse particles. The present study further extends the experimental investigation to the formation process of bidisperse particles. Experiments are conducted in a glass tank with a water depth of 90 cm. Finite amounts of sediments with various weight proportions between coarser and finer particles are released from a cylindrical tube. The Nc being tested ranges from 6E-3 to 9.9E-2, which covers all the three formation regimes. The experimental results showed that the introduction of coarse particles promotes cloud formation and reduce the losses of finer particles into the wake. More quantitative descriptions of the effects of source conditions on the formation processes will be presented during the conference.

Experimental Acid Weathering of Fe-Bearing Mars Analog Minerals and Rocks: Implications for Aqueous Origin of Hematite-Bearing Sediments in Meridiani Planum, Mars

NASA Technical Reports Server (NTRS)

Golden, D. C.; Koster, A. M.; Ming, D. W.; Morris, R. V.; Mertzman, S. A.

2011-01-01

A working hypothesis for Meridiani evaporite formation involves the evaporation of fluids derived from acid weathering of Martian basalts and subsequent diagenesis [1, 2]. However, there are no reported experimental studies for the formation of jarosite and gray hematite (spherules), which are characteristic of Meridiani rocks from Mars analog precursor minerals. A terrestrial analog for hematite spherule formation from basaltic rocks under acidic hydrothermal conditions has been reported [3], and we have previously shown that the hematite spherules and jarosite can be synthetically produced in the laboratory using Fe3+ -bearing sulfate brines under hydrothermal conditions [4]. Here we expand and extend these studies by reacting Mars analog minerals with sulfuric acid to form Meridiani-like rock-mineral compositions. The objective of this study is to provide environmental constraints on past aqueous weathering of basaltic materials on Mars.

Hierarchical organization of butterfly gyroid nanostructures provide a time-frozen glimpse of intracellular membrane development

NASA Astrophysics Data System (ADS)

Wilts, Bodo; Winter, Benjamin; Klatt, Michael; Butz, Benjamin; Fischer, Michael; Kelly, Stephen; Spieker, Erdmann; Steiner, Ullrich; Schroeder-Turk, Gerd

The formation of the biophotonic gyroid material in butterfly wing scales is an exceptional feat of evolutionary engineering of functional nanostructures. Previous work hypothesized that this nanostructure forms by chitin polymerization inside a convoluted membrane of corresponding shape in the endoplasmic reticulum. In vivo imaging however cannot yet elucidate this dynamic formation process, including whether membrane folding and chitin expression are simultaneous or subsequent processes. Here we show an unusual hierarchical ultrastructure in a Hairstreak butterfly that allows high-resolution 3D microscopy. Rather than the conventional polycrystalline space-filling arrangement, the gyroid occurs in isolated facetted crystallites with a pronounced size-gradient. This arrangement is interpreted as a sequence of time-frozen snapshots of the morphogenesis. This provides insight into the formation mechanisms of the nanoporous gyroid material, especially when compared among other butterflies with different arrangements. Financially supported through DFG, the NCCR Bio-inspired Mateirals and the SNF Ambizione programme.

Retigeric acid B enhances the efficacy of azoles combating the virulence and biofilm formation of Candida albicans.

PubMed

Chang, Wenqiang; Li, Ying; Zhang, Li; Cheng, Aixia; Liu, Yongqing; Lou, Hongxiang

2012-01-01

Candida albicans is one of the most prevalent human opportunistic pathogens. C. albicans undergoes a yeast-to-hyphal transition that has been identified as a virulence factor as well as a critical element for mature biofilm formation. A previous study in our lab showed retigeric acid B (RAB), a lichen derived pentacyclic triterpenoid, displayed synergistic antifungal activity with azoles. We now showed that this combination also proved to be adequate in combating the formation of hyphae in vitro. In vivo tests with mice demonstrated RAB could markedly enhance the efficacy of fluconazole to promote the host's longevity through inhibiting hyphae formation and adherence to host cells. It was also observed that RAB and azoles interacted synergistically to block the formation of biofilm. Our data suggested the attenuated yeast-to-hyphal switch contributed to the defect of mature biofilm formation. Moreover, quantitative real-time polymerase chain reaction (qPCR) analysis showed RAB could reduce the transcript level of MDR1, a multidrug efflux pump, and caused a slight transcriptional reduction for another drug pump related gene CDR1. Taken together, our work provides a potential application to combat candidiasis using the combination of RAB and azoles.

Gum and deposit formation from jet-turbine and diesel fuels at 100 C

DOE Office of Scientific and Technical Information (OSTI.GOV)

Mayo, F.R.; Lan, B.Y.

1987-01-01

Rates of oxidation and gum formation for six hydrocarbons, three jet-turbine fuels and three diesel fuels have been measured at 100 C in the presence of t-Bu2O2 tert-butyl-peroxide as initiator. Four of six fuels oxidize faster at 100 C than in previous work at 130 C with initiator. Four any single substrate, the amount of gum produced for the oxygen absorbed is similar at 100 and 130 C even with large changes in rates and t-Bu2O2 concentrations. Thus, one mechanism of gum formation is intimately associated with oxidation. The effects of t-Bu2O2 concentration on the rates of oxygen absorption andmore » gum formation show that gum formation is associated with chain termination by two peroxy radicals. In general, the pure hydrocarbons have long kinetic chains and give good yields of hydroperoxides. The fuels give short kinetic chains and produce little hydroperoxide but but much more gum formation is the coupling of substrates by peroxides in the absence of oxygen. The mechanism, condensation of oxidation products from alkylnaphthalenes, is also proposed.« less

Web-based vs. traditional classroom instruction in gerontology: a pilot study.

PubMed

Gallagher, Judith E; Dobrosielski-Vergona, Kathleen A; Wingard, Robin G; Williams, Theresa M

2005-01-01

Numerous studies have documented comparable outcomes from Web-based and traditional classroom instruction. However, there is a paucity of literature comparing these two delivery formats for gerontology courses in dental hygiene curricula. This study examines the effectiveness of alternative methods of course delivery by comparing student profiles and instructional outcomes from a dental hygiene gerontology course offered both on the Web and in a traditional classroom setting. Questionnaires were sent to both groups of students completing the course. The instrument was designed to establish profiles of the participating students. The data collected included familiarity with Web-based instruction, extent of prior computer training, previous interaction with the elderly, and student evaluations of course effectiveness. Traditional instructional outcomes from evaluated course work were compared, as were post-course exam outcomes that assessed retention of course information six months after course completion. The statistical significance of these data was determined using Statistical Package for Social Scientists software (SPSS, Inc., version 12.0, Chicago, IL). A comparison of student characteristics enrolled in the two course formats revealed marked differences. The Web-based group (n=12) included dental hygiene students (67%) and other health care providers (25%). All participants in the traditional classroom format (n=32) were dental hygiene students. Half of the Web-based respondents were over 25 years of age, and the majority (n=8) had previously taken an online course. The majority of traditional classroom students were 25 years of age or younger (n=21) and had never taken a Web-based course (n=20). Statistically significant differences in instructional outcomes were observed between students enrolled in these two formats. Student retention of course material six months after completion of the course was greater in the Web-based format. Students selecting a Web-based course format demonstrated greater motivation and learning success based on final course grades, completion of assignments, and knowledge retention over time. Age, previous experience with online courses, and selection of teaching mode are factors that may confound course delivery method to influence instructional outcomes in a gerontology course within a dental hygiene curriculum.

DOE Office of Scientific and Technical Information (OSTI.GOV)

König, Johannes; Merle, Alexander; Totzauer, Maximilian

We investigate the early Universe production of sterile neutrino Dark Matter by the decays of singlet scalars. All previous studies applied simplifying assumptions and/or studied the process only on the level of number densities, which makes it impossible to give statements about cosmic structure formation. We overcome these issues by dropping all simplifying assumptions (except for one we showed earlier to work perfectly) and by computing the full course of Dark Matter production on the level of non-thermal momentum distribution functions. We are thus in the position to study a broad range of aspects of the resulting settings and applymore » a broad set of bounds in a reliable manner. We have a particular focus on how to incorporate bounds from structure formation on the level of the linear power spectrum, since the simplistic estimate using the free-streaming horizon clearly fails for highly non-thermal distributions. Our work comprises the most detailed and comprehensive study of sterile neutrino Dark Matter production by scalar decays presented so far.« less

Automated Performance Prediction of Message-Passing Parallel Programs

NASA Technical Reports Server (NTRS)

Block, Robert J.; Sarukkai, Sekhar; Mehra, Pankaj; Woodrow, Thomas S. (Technical Monitor)

1995-01-01

The increasing use of massively parallel supercomputers to solve large-scale scientific problems has generated a need for tools that can predict scalability trends of applications written for these machines. Much work has been done to create simple models that represent important characteristics of parallel programs, such as latency, network contention, and communication volume. But many of these methods still require substantial manual effort to represent an application in the model's format. The NIK toolkit described in this paper is the result of an on-going effort to automate the formation of analytic expressions of program execution time, with a minimum of programmer assistance. In this paper we demonstrate the feasibility of our approach, by extending previous work to detect and model communication patterns automatically, with and without overlapped computations. The predictions derived from these models agree, within reasonable limits, with execution times of programs measured on the Intel iPSC/860 and Paragon. Further, we demonstrate the use of MK in selecting optimal computational grain size and studying various scalability metrics.

Development of the Mathematical Model for Ingot Quality Forecasting with Consideration of Thermal and Physical Characteristics of Mould Powder

NASA Astrophysics Data System (ADS)

Anisimov, K. N.; Loginov, A. M.; Gusev, M. P.; Zarubin, S. V.; Nikonov, S. V.; Krasnov, A. V.

2017-12-01

This paper presents the results of physical modelling of the mould powder skull in the gap between an ingot and the mould. Based on the results obtained from this and previous works, the mathematical model of mould powder behaviour in the gap and its influence on formation of surface defects was developed. The results of modelling satisfactorily conform to the industrial data on ingot surface defects.

Exploring the relationship between black hole accretion and star formation with blind mid-/far-infrared spectroscopic surveys

NASA Astrophysics Data System (ADS)

Bonato, M.; Negrello, M.; Cai, Z.-Y.; De Zotti, G.; Bressan, A.; Lapi, A.; Pozzi, F.; Gruppioni, C.; Danese, L.

2014-11-01

We present new estimates of redshift-dependent luminosity functions of IR lines detectable by SPICA/SAFARI (SPace InfraRed telescope for Cosmology and Astrophysics/SpicA FAR infrared Instrument) and excited both by star formation and by AGN activity. The new estimates improve over previous work by using updated evolutionary models and dealing in a self-consistent way with emission of galaxies as a whole, including both the starburst and the AGN component. New relationships between line and AGN bolometric luminosity have been derived and those between line and IR luminosities of the starburst component have been updated. These ingredients were used to work out predictions for the source counts in 11 mid-/far-IR emission lines partially or entirely excited by AGN activity. We find that the statistics of the emission line detection of galaxies as a whole is mainly determined by the star formation rate, because of the rarity of bright AGNs. We also find that the slope of the line integral number counts is flatter than two implying that the number of detections at fixed observing time increases more by extending the survey area than by going deeper. We thus propose a wide spectroscopic survey of 1 h integration per field of view over an area of 5 deg2 to detect (at 5σ) ˜760 AGNs in [O IV]25.89 μm - the brightest AGN mid-infrared line - out to z ˜ 2. Pointed observations of strongly lensed or hyperluminous galaxies previously detected by large area surveys such as those by Herschel and by the South Pole Telescope can provide key information on the galaxy-AGN co-evolution out to higher redshifts.

Multithreaded implicitly dealiased convolutions

NASA Astrophysics Data System (ADS)

Roberts, Malcolm; Bowman, John C.

2018-03-01

Implicit dealiasing is a method for computing in-place linear convolutions via fast Fourier transforms that decouples work memory from input data. It offers easier memory management and, for long one-dimensional input sequences, greater efficiency than conventional zero-padding. Furthermore, for convolutions of multidimensional data, the segregation of data and work buffers can be exploited to reduce memory usage and execution time significantly. This is accomplished by processing and discarding data as it is generated, allowing work memory to be reused, for greater data locality and performance. A multithreaded implementation of implicit dealiasing that accepts an arbitrary number of input and output vectors and a general multiplication operator is presented, along with an improved one-dimensional Hermitian convolution that avoids the loop dependency inherent in previous work. An alternate data format that can accommodate a Nyquist mode and enhance cache efficiency is also proposed.

Genetically modified haloes: towards controlled experiments in ΛCDM galaxy formation

NASA Astrophysics Data System (ADS)

Roth, Nina; Pontzen, Andrew; Peiris, Hiranya V.

2016-01-01

We propose a method to generate `genetically modified' (GM) initial conditions for high-resolution simulations of galaxy formation in a cosmological context. Building on the Hoffman-Ribak algorithm, we start from a reference simulation with fully random initial conditions, then make controlled changes to specific properties of a single halo (such as its mass and merger history). The algorithm demonstrably makes minimal changes to other properties of the halo and its environment, allowing us to isolate the impact of a given modification. As a significant improvement over previous work, we are able to calculate the abundance of the resulting objects relative to the reference simulation. Our approach can be applied to a wide range of cosmic structures and epochs; here we study two problems as a proof of concept. First, we investigate the change in density profile and concentration as the collapse times of three individual haloes are varied at fixed final mass, showing good agreement with previous statistical studies using large simulation suites. Secondly, we modify the z = 0 mass of haloes to show that our theoretical abundance calculations correctly recover the halo mass function. The results demonstrate that the technique is robust, opening the way to controlled experiments in galaxy formation using hydrodynamic zoom simulations.

Antimalarial Activity and Mechanisms of Action of Two Novel 4-Aminoquinolines against Chloroquine-Resistant Parasites

PubMed Central

Aguiar, Anna Caroline Campos; Santos, Raquel de Meneses; Figueiredo, Flávio Júnior Barbosa; Cortopassi, Wilian Augusto; Pimentel, André Silva; França, Tanos Celmar Costa; Meneghetti, Mario Roberto; Krettli, Antoniana Ursine

2012-01-01

Chloroquine (CQ) is a cost effective antimalarial drug with a relatively good safety profile (or therapeutic index). However, CQ is no longer used alone to treat patients with Plasmodium falciparum due to the emergence and spread of CQ-resistant strains, also reported for P. vivax. Despite CQ resistance, novel drug candidates based on the structure of CQ continue to be considered, as in the present work. One CQ analog was synthesized as monoquinoline (MAQ) and compared with a previously synthesized bisquinoline (BAQ), both tested against P. falciparum in vitro and against P. berghei in mice, then evaluated in vitro for their cytotoxicity and ability to inhibit hemozoin formation. Their interactions with residues present in the NADH binding site of P falciparum lactate dehydrogenase were evaluated using docking analysis software. Both compounds were active in the nanomolar range evaluated through the HRPII and hypoxanthine tests. MAQ and BAQ derivatives were not toxic, and both compounds significantly inhibited hemozoin formation, in a dose-dependent manner. MAQ had a higher selectivity index than BAQ and both compounds were weak PfLDH inhibitors, a result previously reported also for CQ. Taken together, the two CQ analogues represent promising molecules which seem to act in a crucial point for the parasite, inhibiting hemozoin formation. PMID:22649514

Antimalarial activity and mechanisms of action of two novel 4-aminoquinolines against chloroquine-resistant parasites.

PubMed

Aguiar, Anna Caroline Campos; Santos, Raquel de Meneses; Figueiredo, Flávio Júnior Barbosa; Cortopassi, Wilian Augusto; Pimentel, André Silva; França, Tanos Celmar Costa; Meneghetti, Mario Roberto; Krettli, Antoniana Ursine

2012-01-01

Chloroquine (CQ) is a cost effective antimalarial drug with a relatively good safety profile (or therapeutic index). However, CQ is no longer used alone to treat patients with Plasmodium falciparum due to the emergence and spread of CQ-resistant strains, also reported for P. vivax. Despite CQ resistance, novel drug candidates based on the structure of CQ continue to be considered, as in the present work. One CQ analog was synthesized as monoquinoline (MAQ) and compared with a previously synthesized bisquinoline (BAQ), both tested against P. falciparum in vitro and against P. berghei in mice, then evaluated in vitro for their cytotoxicity and ability to inhibit hemozoin formation. Their interactions with residues present in the NADH binding site of P falciparum lactate dehydrogenase were evaluated using docking analysis software. Both compounds were active in the nanomolar range evaluated through the HRPII and hypoxanthine tests. MAQ and BAQ derivatives were not toxic, and both compounds significantly inhibited hemozoin formation, in a dose-dependent manner. MAQ had a higher selectivity index than BAQ and both compounds were weak PfLDH inhibitors, a result previously reported also for CQ. Taken together, the two CQ analogues represent promising molecules which seem to act in a crucial point for the parasite, inhibiting hemozoin formation.

Laser generation of XeCl exciplex molecules in a longitudinal repetitively pulsed discharge in a Xe - CsCl mixture

NASA Astrophysics Data System (ADS)

Boichenko, A. M.; Klenovskii, M. S.

2015-12-01

By using the previously developed kinetic model, we have carried out simulations to study the possibility of laser generation of XeCl exciplex molecules in the working medium based on a mixture of Xe with CsCl vapours, excited by a longitudinal repetitively pulsed discharge. The formation mechanism of exciplex molecules in this mixture is fundamentally different from the formation mechanisms in the traditional mixtures of exciplex lasers. The conditions that make the laser generation possible are discussed. For these conditions, with allowance for available specific experimental conditions of the repetitively pulsed discharge excitation, we have obtained the calculated dependences of the power and efficiency of generation on the reflectivity of mirrors in a laser cavity.

Polypeptide formation on polar mineral surfaces: possibility of complete chirality

NASA Astrophysics Data System (ADS)

Schrader, Malcolm E.

2017-01-01

In the present work, it is shown that thermodynamically feasible polymerization of cyanomethanol, which can be formed from formaldehyde and hydrogen cyanide, can lead to synthesis of polypeptides as well as to the previously reported synthesis of RNA. If the polymerization takes place on a one-dimensional feature of a mineral, such as for example a crack on its surface, the concept of quasi-chirality is introduced to describe the adsorbed polypeptide. This, in principle, would lead to formation of proteins that are completely homochiral in their alpha carbon groups. The concept of quasi-chirality can also be introduced in the condensation of glycine under similar conditions to form a polypeptide. This again leads to proteins completely chiral in their alpha carbon groups.

Gum and deposit formation from jet turbine and diesel fuels at 100/sup 0/C

DOE Office of Scientific and Technical Information (OSTI.GOV)

Mayo, F.R.; Lan, B.Y.

1987-02-01

Rates of oxidation and gum formation for six hydrocarbons, three jet turbine fuels and three diesel fuels have been measured at 100/sup 0/C in the presence of t-Bu/sub 2/O/sub 2/ as initiator. Four of the six fuels oxidize faster at 100/sup 0/C than in previous work at 130/sup 0/C without initiator. For any single substrate, the amount of gum produced for the oxygen absorbed is similar at 100 and 130/sup 0/C, even with large changes in rates and t-Bu/sub 2/O/sub 2/ concentrations. In general, the pure hydrocarbons have long kinetic chains and give good yields of hydroperoxides.

Admittance Survey of Type 1 Coronae on Venus: Implications for Elastic Thickness

NASA Technical Reports Server (NTRS)

Hoogenboom, T.; Smrekar, S. E.; Anderson, F. S.; Houseman, G.

2003-01-01

Coronae are volcano-tectonic features on Venus which range from 60km to 2600km and are defined by their nearly circular patterns of fractures. Type 1 (regular) coronae are classified as having >50% complete fracture annuli. Previous work has examined the factors controlling the morphology, size, and fracture pattern of coronae, using lithospheric properties, loading signature and geologic characteristics. However, these studies have been limited to Type 2 (topographic) coronae (e.g. coronaes with <50% fracture annuli), and the factors controlling the formation of Type 1 coronae remain poorly understood. In this study, we apply the methodology of to survey the admittance signature for Type 1 coronae to determine the controlling parameters which govern Type 1 coronae formation.

Long Chain Saturated and Unsaturated Carboxylic Acids: Filling a Large Gap of Knowledge in Their Enthalpies of Formation.

PubMed

Rogers, Donald W; Zavitsas, Andreas A

2017-01-06

Despite their abundance in nature and their importance in biology, medicine, nutrition, and in industry, gas phase enthalpies of formation of many long chain saturated and unsaturated fatty acids and of dicarboxylic acids are either unavailable or have been estimated with large uncertainties. Available experimental values for stearic acid show a spread of 68 kJ mol -1 . This work fills the knowledge gap by obtaining reliable values by quantum theoretical calculations using G4 model chemistry. Compounds with up to 20 carbon atoms are treated. The theoretical results are in excellent agreement with well established experimental values when such values exist, and they provide a large number of previously unavailable values.

Point defects in thorium nitride: A first-principles study

NASA Astrophysics Data System (ADS)

Pérez Daroca, D.; Llois, A. M.; Mosca, H. O.

2016-11-01

Thorium and its compounds (carbides and nitrides) are being investigated as possible materials to be used as nuclear fuels for Generation-IV reactors. As a first step in the research of these materials under irradiation, we study the formation energies and stability of point defects in thorium nitride by means of first-principles calculations within the framework of density functional theory. We focus on vacancies, interstitials, Frenkel pairs and Schottky defects. We found that N and Th vacancies have almost the same formation energy and that the most energetically favorable defects of all studied in this work are N interstitials. These kind of results for ThN, to the best authors' knowledge, have not been obtained previously, neither experimentally, nor theoretically.

Making Online Products More Tangible: The Effect of Product Presentation Formats on Product Evaluations.

PubMed

Verhagen, Tibert; Vonkeman, Charlotte; van Dolen, Willemijn

2016-07-01

Although several studies have looked at the effects of online product presentations on consumer decision making, no study thus far has considered a potential key factor in online product evaluations: tangibility. The present study aims at filling this gap by developing and testing a model that relates different online product presentation formats to the three-dimensional concept of product tangibility. We test how the three tangibility dimensions influence perceived diagnosticity and, eventually, online purchase intentions. A between-subjects lab experiment (n = 366) was used to test the hypothesized effects of three common online product presentation formats (pictures vs. 360 spin rotation vs. virtual mirror). The results showed that out of these formats, virtual mirrors were superior in providing a sense of product tangibility, followed by the 360-spin rotation format and static pictures. Furthermore, in terms of predictive validity, two of the three tangibility dimensions significantly increased perceived diagnosticity, which, in turn, positively and strongly affected purchase intentions. Overall, our results add to previous works studying the relationships between online product presentation formats and consumer decision making. Also, they hold value for online practitioners by highlighting the potential benefits of applying technologically advanced product presentation formats such as the virtual mirror.

Grizzly Staus Report

DOE Office of Scientific and Technical Information (OSTI.GOV)

Spencer, Benjamin; Zhang, Yongfeng; Chakraborty, Pritam

2014-09-01

This report summarizes work during FY 2014 to develop capabilities to predict embrittlement of reactor pressure vessel steel, and to assess the response of embrittled reactor pressure vessels to postulated accident conditions. This work has been conducted a three length scales. At the engineering scale, 3D fracture mechanics capabilities have been developed to calculate stress intensities and fracture toughnesses, to perform a deterministic assessment of whether a crack would propagate at the location of an existing flaw. This capability has been demonstrated on several types of flaws in a generic reactor pressure vessel model. Models have been developed at themore » scale of fracture specimens to develop a capability to determine how irradiation affects the fracture toughness of material. Verification work has been performed on a previously-developed model to determine the sensitivity of the model to specimen geometry and size effects. The effects of irradiation on the parameters of this model has been investigated. At lower length scales, work has continued in an ongoing to understand how irradiation and thermal aging affect the microstructure and mechanical properties of reactor pressure vessel steel. Previously-developed atomistic kinetic monte carlo models have been further developed and benchmarked against experimental data. Initial work has been performed to develop models of nucleation in a phase field model. Additional modeling work has also been performed to improve the fundamental understanding of the formation mechanisms and stability of matrix defects caused.« less

Microstructure-sensitive small fatigue crack growth assessment. Effect of strain ratio multiaxial strain state and geometric discontinuities

DOE Office of Scientific and Technical Information (OSTI.GOV)

Castelluccio, Gustavo M.; McDowell, David L.

Fatigue crack initiation in the high cycle fatigue regime is strongly influenced by microstructural features. Research efforts have usually focused on predicting fatigue resistance against crack incubation without considering the early fatigue crack growth after encountering the first grain boundary. However, a significant fraction of the variability of the total fatigue life can be attributed to growth of small cracks as they encounter the first few grain boundaries, rather than crack formation within the first grain. Our paper builds on the framework previously developed by the authors to assess microstructure-sensitive small fatigue crack formation and early growth under complex loadingmore » conditions. Moreover, the scheme employs finite element simulations that explicitly render grains and crystallographic directions along with simulation of microstructurally small fatigue crack growth from grain to grain. The methodology employs a crystal plasticity algorithm in ABAQUS that was previously calibrated to study fatigue crack initiation in RR1000 Ni-base superalloy. Our work present simulations with non-zero applied mean strains and geometric discontinuities that were not previously considered for calibration. Results exhibit trends similar to those found in experiments for multiple metallic materials, conveying a consistent physical description of fatigue damage phenomena.« less

Microstructure-sensitive small fatigue crack growth assessment. Effect of strain ratio multiaxial strain state and geometric discontinuities

DOE PAGES

Castelluccio, Gustavo M.; McDowell, David L.

2015-09-16

Fatigue crack initiation in the high cycle fatigue regime is strongly influenced by microstructural features. Research efforts have usually focused on predicting fatigue resistance against crack incubation without considering the early fatigue crack growth after encountering the first grain boundary. However, a significant fraction of the variability of the total fatigue life can be attributed to growth of small cracks as they encounter the first few grain boundaries, rather than crack formation within the first grain. Our paper builds on the framework previously developed by the authors to assess microstructure-sensitive small fatigue crack formation and early growth under complex loadingmore » conditions. Moreover, the scheme employs finite element simulations that explicitly render grains and crystallographic directions along with simulation of microstructurally small fatigue crack growth from grain to grain. The methodology employs a crystal plasticity algorithm in ABAQUS that was previously calibrated to study fatigue crack initiation in RR1000 Ni-base superalloy. Our work present simulations with non-zero applied mean strains and geometric discontinuities that were not previously considered for calibration. Results exhibit trends similar to those found in experiments for multiple metallic materials, conveying a consistent physical description of fatigue damage phenomena.« less

Working data together: the accountability and reflexivity of digital astronomical practice.

PubMed

Hoeppe, Götz

2014-04-01

Drawing on ethnomethodology, this article considers the sequential work of astronomers who combine observations from telescopes at two observatories in making a data set for scientific analyses. By witnessing the induction of a graduate student into this work, it aims at revealing the backgrounded assumptions that enter it. I find that these researchers achieved a consistent data set by engaging diverse evidential contexts as contexts of accountability. Employing graphs that visualize data in conventional representational formats of observational astronomy, experienced practitioners held each other accountable by using an 'implicit cosmology', a shared (but sometimes negotiable) characterization of 'what the universe looks like' through these formats. They oriented to data as malleable, that is, as containing artifacts of the observing situation which are unspecified initially but can be defined and subsequently removed. Alternating between reducing data and deducing astronomical phenomena, they ascribed artifacts to local observing conditions or computational procedures, thus maintaining previously stabilized phenomena reflexively. As researchers in data-intensive sciences are often removed from the instruments that generated the data they use, this example demonstrates how scientists can achieve agreement by engaging stable 'global' data sets and diverse contexts of accountability, allowing them to bypass troubling features and limitations of data generators.

Electroosmotic Mixing in Nanochannels

NASA Astrophysics Data System (ADS)

Conlisk, A. T.; Chen, Lei

2004-11-01

Electroosmotic flow in nanochannels is characterized by low Reynolds number in which flow mixing is difficult because of the dominance of molecular diffusion. Previous work shows that heterogenerous surface potential could generate a circulation region within the bulk flow near the surface. But all of this work requires that the ionic species be pairs of ions of equal and opposite valence and the distribution of ions is not considered. In the present work the electroosmotic flow in a rectangular channel with non-uniform zeta potential is examined. A model for the two dimensional electroosmotic flow problem is established. The distributions of potential, velocity and mole fractions are calculated numerically. Vortex formation is observed within the bulk flow near the the region of non-uniform zeta potential which suggests mixing can be induced.

Adsorption of O_{2} on Ag(111): Evidence of Local Oxide Formation.

PubMed

Andryushechkin, B V; Shevlyuga, V M; Pavlova, T V; Zhidomirov, G M; Eltsov, K N

2016-07-29

The atomic structure of the disordered phase formed by oxygen on Ag(111) at low coverage is determined by a combination of low-temperature scanning tunneling microscopy and density functional theory. We demonstrate that the previous assignment of the dark objects in STM to chemisorbed oxygen atoms is incorrect and incompatible with trefoil-like structures observed in atomic-resolution images in current work. In our model, each object is an oxidelike ring formed by six oxygen atoms around the vacancy in Ag(111).

Processing of a Mullite Matrix, Molybdenum Disilicide Reinforced Composite

DTIC Science & Technology

1991-01-01

at high temperatures (best of the silicides and almost as good as SiC) is due to the formation of protective SiO2 layers on the surface of the MoSi 2...of the precipitation preparation process) consisted largely of sodium . Previous work 52 showed that the particle size was 160 A (TEM analysis) not...M.K. Brun, L.E. Szala, "Kinetics of Oxidation of Carbide and Silicide Dispersed Phases in Oxide Matrices," Adv. Ceram. Mat., 3 [5] 491-497 (1988). 5

Study on Flake Formation Behavior and Its Influence Factors in Cr5 Steel

PubMed Central

Chen, Huitao; Zhao, Wu; Yan, Liang

2018-01-01

A flake is a crack that is induced by trapped hydrogen within steel. To study its formation mechanism, previous studies mostly focused on the formation process and magnitude of hydrogen pressure in hydrogen traps such as cavities and cracks. However, according to recent studies, the hydrogen leads to the decline of the mechanical properties of steel, which is known as hydrogen embrittlement, is another reason for flake formation. In addition, the phenomenon of stress induced hydrogen uphill diffusion should not be neglected. All of the three behaviors are at work simultaneously. In order to further explore the formation mechanism of flakes in steel, the process of flake initiation and growth were studied with the following three coupling factors: trap hydrogen pressure, hydrogen embrittlement, and stress induced hydrogen re-distribution. The analysis model was established using the finite element method, and a crack whose radius is 0.5 mm was set in its center. The cohesive method and Bilinear Traction Separate Law (BTSL) were used to address the coupling effect. The results show that trap hydrogen pressure is the main driving force for flake formation. After the high hydrogen pressure was generated around the trap, a stress field formed. In addition, the trap is the center of stress concentration. Then, hydrogen is concentrated in a distribution around this trap, and most of the steel mechanical properties are reduced. The trap size is a key factor for defining the critical hydrogen content for flake formation and propagation. However, when the trap size exceeds the specified value, the critical hydrogen content does not change any more. As for the crack whose radius is 0.5 mm, the critical hydrogen content of Cr5VMo steel is 2.2 ppm, which is much closer to the maximum safe hydrogen concentration of 2.0 ppm used in China. The work presented in this article increases our understanding of flake formation and propagation mechanisms in steel. PMID:29702610

Formation Control for the MAXIM Mission

NASA Technical Reports Server (NTRS)

Luquette, Richard J.; Leitner, Jesse; Gendreau, Keith; Sanner, Robert M.

2004-01-01

Over the next twenty years, a wave of change is occurring in the space-based scientific remote sensing community. While the fundamental limits in the spatial and angular resolution achievable in spacecraft have been reached, based on today s technology, an expansive new technology base has appeared over the past decade in the area of Distributed Space Systems (DSS). A key subset of the DSS technology area is that which covers precision formation flying of space vehicles. Through precision formation flying, the baselines, previously defined by the largest monolithic structure which could fit in the largest launch vehicle fairing, are now virtually unlimited. Several missions including the Micro-Arcsecond X-ray Imaging Mission (MAXIM), and the Stellar Imager will drive the formation flying challenges to achieve unprecedented baselines for high resolution, extended-scene, interferometry in the ultraviolet and X-ray regimes. This paper focuses on establishing the feasibility for the formation control of the MAXIM mission. MAXIM formation flying requirements are on the order of microns, while Stellar Imager mission requirements are on the order of nanometers. This paper specifically addresses: (1) high-level science requirements for these missions and how they evolve into engineering requirements; and (2) the development of linearized equations of relative motion for a formation operating in an n-body gravitational field. Linearized equations of motion provide the ground work for linear formation control designs.

Structure and function of the C-terminal domain of MrpA in the Bacillus subtilis Mrp-antiporter complex--the evolutionary progenitor of the long horizontal helix in complex I.

PubMed

Virzintiene, Egle; Moparthi, Vamsi K; Al-Eryani, Yusra; Shumbe, Leonard; Górecki, Kamil; Hägerhäll, Cecilia

2013-10-11

MrpA and MrpD are homologous to NuoL, NuoM and NuoN in complex I over the first 14 transmembrane helices. In this work, the C-terminal domain of MrpA, outside this conserved area, was investigated. The transmembrane orientation was found to correspond to that of NuoJ in complex I. We have previously demonstrated that the subunit NuoK is homologous to MrpC. The function of the MrpA C-terminus was tested by expression in a previously used Bacillus subtilis model system. At neutral pH, the truncated MrpA still worked, but at pH 8.4, where Mrp-complex formation is needed for function, the C-terminal domain of MrpA was absolutely required. Copyright © 2013 Federation of European Biochemical Societies. Published by Elsevier B.V. All rights reserved.

Characterization of Organic Nitrate Formation in Limonene Secondary Organic Aerosol using High-Resolution Chemical Ionization Mass Spectrometry

NASA Astrophysics Data System (ADS)

Faxon, Cameron; Hammes, Julia; Peng, Jianfei; Hallquist, Mattias; Pathak, Ravi

2016-04-01

Previous work has shown that organic nitrates (RONO2) are prevalent in the boundary layer, and can contribute significantly to secondary organic aerosol formation. Monoterpenes, including limonene, have been shown to be precursors for the formation of these organic nitrates. Limonene has two double bonds, either of which may be oxidized by NO3 or O3. This leads to the generation of products that can subsequently condense or partition into the particle phase, producing secondary organic aerosol. In order to further elucidate the particle and gas phase product distribution of organic nitrates forming from the reactions of limonene and the nitrate radical (NO3), a series of experiments were performed in the Gothenburg Flow Reactor for Oxidation Studies at Low Temperatures (G-FROST), described by previous work. N2O5 was used as the source for NO3 and NO2, and a characterized diffusion source was used to introduce limonene into the flow reactor. All experiments were conducted in the absence of light, and the concentration of limonene was increased step-wise throughout each experiment to modify the ratio of N2O5to limonene. The experiments were conducted such that both limonene- and N2O5-limited regimes were present. Gas and particle phase products were measured using an iodide High-Resolution Time-of-Flight Mass Spectrometer (HR-ToF-CIMS) coupled to a Filter Inlet for Gases and AEROsols (FIGAERO, and particle size and SOA mass concentrations were derived using a Scanning Mobility Particle Sizer (SMPS). CIMS measurement techniques have previously been employed for the measurement of organic nitrate products of such compounds using multiple reagent ions. The use of this instrumentation allowed for the identification of chemical formulas for gas and particle phase species. The findings from the experiments will be presented in terms of the relative gas-particle partitioning of major products and the effects of N2O5/limonene ratios on product distributions. Additionally, a comparison of the distribution of the most prevalent reaction products relative to the expected distribution derived using chemical kinetics simulations based on the Master Chemical Mechanism (MCM) limonene mechanism will be discussed.

Nanocrystalline Precursors for the Co-Assembly of Crack-Free Metal Oxide Inverse Opals.

PubMed

Phillips, Katherine R; Shirman, Tanya; Shirman, Elijah; Shneidman, Anna V; Kay, Theresa M; Aizenberg, Joanna

2018-05-01

Inorganic microstructured materials are ubiquitous in nature. However, their formation in artificial self-assembly systems is challenging as it involves a complex interplay of competing forces during and after assembly. For example, colloidal assembly requires fine-tuning of factors such as the size and surface charge of the particles and electrolyte strength of the solvent to enable successful self-assembly and minimize crack formation. Co-assembly of templating colloidal particles together with a sol-gel matrix precursor material helps to release stresses that accumulate during drying and solidification, as previously shown for the formation of high-quality inverse opal (IO) films out of amorphous silica. Expanding this methodology to crystalline materials would result in microscale architectures with enhanced photonic, electronic, and catalytic properties. This work describes tailoring the crystallinity of metal oxide precursors that enable the formation of highly ordered, large-area (mm 2 ) crack-free titania, zirconia, and alumina IO films. The same bioinspired approach can be applied to other crystalline materials as well as structures beyond IOs. © 2018 WILEY-VCH Verlag GmbH & Co. KGaA, Weinheim.

Land use planning and surface heat island formation: A parcel-based radiation flux approach

NASA Astrophysics Data System (ADS)

Stone, Brian; Norman, John M.

This article presents a study of residential parcel design and surface heat island formation in a major metropolitan region of the southeastern United States. Through the integration of high-resolution multispectral data (10 m) with property tax records for over 100,000 single-family residential parcels in the Atlanta, Georgia, metropolitan region, the influence of the size and material composition of residential land use on an indicator of surface heat island formation is reported. In contrast to previous work on the urban heat island, this study derives a parcel-based indicator of surface warming to permit the impact of land use planning regulations governing the density and design of development on the excess surface flux of heat energy to be measured. The results of this study suggest that the contribution of individual land parcels to regional surface heat island formation could be reduced by approximately 40% through the adoption of specific land use planning policies, such as zoning and subdivision regulations, and with no modifications to the size or albedo of the residential structure.

An experimental flow-through assessment of acidic Fe/Mg smectite formation on early Mars

NASA Astrophysics Data System (ADS)

Sutter, B.; Peretyazhko, T.; Garcia, A. H.; Ming, D. W.

2017-12-01

Orbital observations have detected the phyllosilicate smectite in layered material hundreds of meters thick, intracrater depositional fans, and plains sediments on Mars; however, the detection of carbonate deposits is limited. Instead of neutral/alkaline conditions during the Noachian, early Mars may have experienced mildly acidic conditions derived from volcanic acid-sulfate solutions that allowed Fe/Mg smectite formation but prevented widespread carbonate formation. The detection of acid sulfates (e.g., jarosite) associated with smectite in Mawrth Vallis supports this hypothesis. Previous work demonstrated smectite (saponite) formation in closed hydrologic systems (batch reactor) from basaltic glass at pH 4 and 200°C (Peretyazhko et al., 2016 GCA). This work presents results from alteration of basaltic glass from alkaline to acidic conditions in open hydrologic systems (flow-through reactor). Preliminary experiments exposed basaltic glass to deionized water at 190°C at 0.25 ml/min where solution pH equilibrated to 9.5. These initial high pH experiments were conducted to evaluate the flow-through reactor system before working with lower pHs. Smectite at this pH was not produced and instead X-ray diffraction results consistent with serpentine was detected. Experiments are in progress exposing basaltic glass from pH 8 down to pH 3 to determine what range of pHs could allow for smectite formation in this experimental open-system. The production of smectite under an experimental open-system at low pHs if successful, would support a significant paradigm shift regarding the geochemical evolution of early Mars: Early Mars geochemical solutions were mildly acidic, not neutral/alkaline. This could have profound implications regarding early martain microbiology where acid conditions instead of neutral/alkaline conditions will require further research in terrestrial analogs to address the potential for biosignature preservation on Mars (Johnson et al., 2016, LPSC).

Recruitment and Rotation of the Trainers in the Lifelong Learning Context

NASA Astrophysics Data System (ADS)

Mamaqi, Xhevrie; Rubio, Pilar Olave; Alvarez, Jesús Miguel

The workplace of today is characterized by rapid changes in work processes, in competition, in customer demands, and in work practices. To keep abreast of these rapid changes employers and employees must be committed to lifelong learning in order to keep ahead. One of the most important actors in the lifelong learning development process are the trainers, whose professional characteristics needs meeting new skills and adapting an varied and specific contents of the current labour market. Affected by the discontinuity and a high rate of job rotation, the recognition of it labour status and basic competence and skills, forms part of the Bologna Process recognized as Vocational Education Training (VET). Sixty in-depth interviews realized to managers of the centres of formation, are used as tools to obtain information about following topics: recruitment strategies, conventional and not conventional routes of the recruitment, rate rotation, qualification and training of the Spanish trainers. The transcription of the interviews achieve that not always exist a previous plan of recruitment, except that it is a question as big centers of formation. Also, the obtained information indicates a high rate of rotation that affects the trainers ones as professionals since there exists the discontinuity of the formative offer on the labour market.

On the formation of fold-type oscillation marks in the continuous casting of steel.

PubMed

Vynnycky, M; Saleem, S; Devine, K M; Florio, B J; Mitchell, S L; O'Brien, S B G

2017-06-01

Asymptotic methods are employed to revisit an earlier model for oscillation-mark formation in the continuous casting of steel. A systematic non-dimensionalization of the governing equations, which was not carried out previously, leads to a model with 12 dimensionless parameters. Analysis is provided in the same parameter regime as for the earlier model, and surprisingly simple analytical solutions are found for the oscillation-mark profiles; these are found to agree reasonably well with the numerical solution in the earlier model and very well with fold-type oscillation marks that have been obtained in more recent experimental work. The benefits of this approach, when compared with time-consuming numerical simulations, are discussed in the context of auxiliary models for macrosegregation and thermomechanical stresses and strains.

On the formation of fold-type oscillation marks in the continuous casting of steel

PubMed Central

Saleem, S.; Devine, K. M.; Florio, B. J.; Mitchell, S. L.; O’Brien, S. B. G.

2017-01-01

Asymptotic methods are employed to revisit an earlier model for oscillation-mark formation in the continuous casting of steel. A systematic non-dimensionalization of the governing equations, which was not carried out previously, leads to a model with 12 dimensionless parameters. Analysis is provided in the same parameter regime as for the earlier model, and surprisingly simple analytical solutions are found for the oscillation-mark profiles; these are found to agree reasonably well with the numerical solution in the earlier model and very well with fold-type oscillation marks that have been obtained in more recent experimental work. The benefits of this approach, when compared with time-consuming numerical simulations, are discussed in the context of auxiliary models for macrosegregation and thermomechanical stresses and strains. PMID:28680666

Formation of laser-induced periodic surface structures (LIPSS) on tool steel by multiple picosecond laser pulses of different polarizations

NASA Astrophysics Data System (ADS)

Gregorčič, Peter; Sedlaček, Marko; Podgornik, Bojan; Reif, Jürgen

2016-11-01

Laser-induced periodic surface structures (LIPSS) are produced on cold work tool steel by irradiation with a low number of picosecond laser pulses. As expected, the ripples, with a period of about 90% of the laser wavelength, are oriented perpendicular to the laser polarization. Subsequent irradiation with the polarization rotated by 45° or 90° results in a corresponding rotation of the ripples. This is visible already with the first pulse and becomes almost complete - erasing the previous orientation - after as few as three pulses. The phenomenon is not only observed for single-spot irradiation but also for writing long coherent traces. The experimental results strongly defy the role of surface plasmon-polaritons as the predominant key to LIPSS formation.

BigView Image Viewing on Tiled Displays

NASA Technical Reports Server (NTRS)

Sandstrom, Timothy

2007-01-01

BigView allows for interactive panning and zooming of images of arbitrary size on desktop PCs running Linux. Additionally, it can work in a multi-screen environment where multiple PCs cooperate to view a single, large image. Using this software, one can explore on relatively modest machines images such as the Mars Orbiter Camera mosaic [92,160 33,280 pixels]. The images must be first converted into paged format, where the image is stored in 256 256 pages to allow rapid movement of pixels into texture memory. The format contains an image pyramid : a set of scaled versions of the original image. Each scaled image is 1/2 the size of the previous, starting with the original down to the smallest, which fits into a single 256 x 256 page.

Near-Infrared Imaging for Spatial Mapping of Organic Content in Petroleum Source Rocks

NASA Astrophysics Data System (ADS)

Mehmani, Y.; Burnham, A. K.; Vanden Berg, M. D.; Tchelepi, H.

2017-12-01

Natural gas from unconventional petroleum source rocks (shales) plays a key role in our transition towards sustainable low-carbon energy production. The potential for carbon storage (in adsorbed state) in these formations further aligns with efforts to mitigate climate change. Optimizing production and development from these resources requires knowledge of the hydro-thermo-mechanical properties of the rock, which are often strong functions of organic content. This work demonstrates the potential of near-infrared (NIR) spectral imaging in mapping the spatial distribution of organic content with O(100µm) resolution on cores that can span several hundred feet in depth (Mehmani et al., 2017). We validate our approach for the immature oil shale of the Green River Formation (GRF), USA, and show its applicability potential in other formations. The method is a generalization of a previously developed optical approach specialized to the GRF (Mehmani et al., 2016a). The implications of this work for spatial mapping of hydro-thermo-mechanical properties of excavated cores, in particular thermal conductivity, are discussed (Mehmani et al., 2016b). References:Mehmani, Y., A.K. Burnham, M.D. Vanden Berg, H. Tchelepi, "Quantification of organic content in shales via near-infrared imaging: Green River Formation." Fuel, (2017). Mehmani, Y., A.K. Burnham, M.D. Vanden Berg, F. Gelin, and H. Tchelepi. "Quantification of kerogen content in organic-rich shales from optical photographs." Fuel, (2016a). Mehmani, Y., A.K. Burnham, H. Tchelepi, "From optics to upscaled thermal conductivity: Green River oil shale." Fuel, (2016b).

TRENCADIS--a WSRF grid MiddleWare for managing DICOM structured reporting objects.

PubMed

Blanquer, Ignacio; Hernandez, Vicente; Segrelles, Damià

2006-01-01

The adoption of the digital processing of medical data, especially on radiology, has leaded to the availability of millions of records (images and reports). However, this information is mainly used at patient level, being the extraction of information, organised according to administrative criteria, which make the extraction of knowledge difficult. Moreover, legal constraints make the direct integration of information systems complex or even impossible. On the other side, the widespread of the DICOM format has leaded to the inclusion of other information different from just radiological images. The possibility of coding radiology reports in a structured form, adding semantic information about the data contained in the DICOM objects, eases the process of structuring images according to content. DICOM Structured Reporting (DICOM-SR) is a specification of tags and sections to code and integrate radiology reports, with seamless references to findings and regions of interests of the associated images, movies, waveforms, signals, etc. The work presented in this paper aims at developing of a framework to efficiently and securely share medical images and radiology reports, as well as to provide high throughput processing services. This system is based on a previously developed architecture in the framework of the TRENCADIS project, and uses other components such as the security system and the Grid processing service developed in previous activities. The work presented here introduces a semantic structuring and an ontology framework, to organise medical images considering standard terminology and disease coding formats (SNOMED, ICD9, LOINC..).

Simultaneous hydrogenation and UV-photolysis experiments of NO in CO-rich interstellar ice analogues; linking HNCO, OCN-, NH2CHO, and NH2OH

NASA Astrophysics Data System (ADS)

Fedoseev, G.; Chuang, K.-J.; van Dishoeck, E. F.; Ioppolo, S.; Linnartz, H.

2016-08-01

The laboratory work presented here simulates the chemistry on icy dust grains as typical for the `CO freeze-out stage' in dark molecular clouds. It differs from previous studies in that solid-state hydrogenation and vacuum UV photoprocessing are applied simultaneously to co-depositing molecules. In parallel, the reactions at play are described for fully characterized laboratory conditions. The focus is on the formation of molecules containing both carbon and nitrogen atoms, starting with NO in CO-, H2CO-, and CH3OH-rich ices at 13 K. The experiments yield three important conclusions. (1) Without UV processing hydroxylamine (NH2OH) is formed, as reported previously. (2) With UV processing (energetic) NH2 is formed through photodissociation of NH2OH. This radical is key in the formation of species with an N-C bond. (3) The formation of three N-C bearing species, HNCO, OCN-, and NH2CHO, is observed. The experiments put a clear chemical link between these species; OCN- is found to be a direct derivative of HNCO and the latter is shown to have the same precursor as formamide (NH2CHO). Moreover, the addition of VUV competing channels decreases the amount of NO molecules converted into NH2OH by at least one order of magnitude. Consequently, this decrease in NH2OH formation yield directly influences the amount of NO molecules that can be converted into HNCO, OCN-, and NH2CHO.

Prostaglandin E2 regulates melanocyte dendrite formation through activation of PKCζ

PubMed Central

Scott, Glynis; Fricke, Alex; Fender, Anne; McClelland, Lindy; Jacobs, Stacey

2007-01-01

Prostaglandins are lipid signaling intermediates released by keratinocytes in response to ultraviolet irradiation (UVR) in the skin. The main prostaglandin released following UVR is PGE2, a ligand for 4 related G-protein coupled receptors (EP1, EP2, EP3 and EP4). Our previous work established that PGE2 stimulates melanocyte dendrite formation through activation of the EP1 and EP3 receptors. The purpose of the present report is to define the signaling intermediates involved in EP1 and EP3-dependent dendrite formation in human melanocytes. We recently showed that activation of the atypical PKCζ isoform stimulates melanocyte dendricity in response to treatment with lysophosphatidylcholine. We therefore examined the potential contribution of PKCζ activation on EP1 and EP3-dependent dendrite formation in melanocytes. Stimulation of the EP1 and EP3 receptors by selective agonists activated PKCζ, and inhibition of PKCζ activation abrogated EP1 and EP3-receptor mediated melanocyte dendricity. Because of the importance of Rho-GTP binding proteins in the regulation of melanocyte dendricity, we also examined the effect of EP1 and EP3 receptor activation on Rac and Rho activity. Neither Rac nor Rho was activated upon treatment with EP1,3-receptor agonists. We show that melanocytes express only the EP3A1 isoform, but not the EP3B receptor isoform, previously associated with Rho activation, consistent with a lack of Rho stimulation by EP3 agonists. Our data suggest that PKCζ activation plays a predominant role in regulation of PGE2-dependent melanocyte dendricity. PMID:17850789

Formative assessment to develop oral communication competency using YouTube: self- and peer assessment in engineering

NASA Astrophysics Data System (ADS)

Nikolic, Sasha; Stirling, David; Ros, Montserrat

2018-07-01

Obtaining oral communication competency is an important skill for engineering students to prepare them for interacting and working in any professional setting. For engineers, it is also important to be able to present technical information to non-technical audiences. To ensure oral competency, a non-graded formative assessment approach using video with self- and peer assessment was introduced into a final-year engineering thesis course. A low workload approach was used due to growing student numbers and higher pressures on academic staff. A quasi-experimental design was used to investigate the differences between traditional delivery, self-assessment and combined self-assessment with peer feedback. The study found that the formative models were seen by students to help develop their presentation skills. However, the results showed no significant improvement compared to the traditional method. This could be due to previous presentation practice within the degree or more probable, the lack of incentive for weaker students to engage and improve due to the ungraded nature of the activity.

BioModels: expanding horizons to include more modelling approaches and formats

PubMed Central

Nguyen, Tung V N; Graesslin, Martin; Hälke, Robert; Ali, Raza; Schramm, Jochen; Wimalaratne, Sarala M; Kothamachu, Varun B; Rodriguez, Nicolas; Swat, Maciej J; Eils, Jurgen; Eils, Roland; Laibe, Camille; Chelliah, Vijayalakshmi

2018-01-01

Abstract BioModels serves as a central repository of mathematical models representing biological processes. It offers a platform to make mathematical models easily shareable across the systems modelling community, thereby supporting model reuse. To facilitate hosting a broader range of model formats derived from diverse modelling approaches and tools, a new infrastructure for BioModels has been developed that is available at http://www.ebi.ac.uk/biomodels. This new system allows submitting and sharing of a wide range of models with improved support for formats other than SBML. It also offers a version-control backed environment in which authors and curators can work collaboratively to curate models. This article summarises the features available in the current system and discusses the potential benefit they offer to the users over the previous system. In summary, the new portal broadens the scope of models accepted in BioModels and supports collaborative model curation which is crucial for model reproducibility and sharing. PMID:29106614

Clay mineral formation under oxidized conditions and implications for paleoenvironments and organic preservation on Mars

DOE Office of Scientific and Technical Information (OSTI.GOV)

Gainey, Seth R.; Hausrath, Elisabeth M.; Adcock, Christopher T.

Clay mineral-bearing locations have been targeted for martian exploration as potentially habitable environments and as possible repositories for the preservation of organic matter. Although organic matter has been detected at Gale Crater, Mars, its concentrations are lower than expected from meteoritic and indigenous igneous and hydrothermal reduced carbon. We conducted synthesis experiments motivated by the hypothesis that some clay mineral formation may have occurred under oxidized conditions conducive to the destruction of organics. Previous work has suggested that anoxic and/or reducing conditions are needed to synthesize the Fe-rich clay mineral nontronite at low temperatures. In contrast, our experiments demonstrated themore » rapid formation of Fe-rich clay minerals of variable crystallinity from aqueous Fe3+ with small amounts of aqueous Mg2+. Our results suggest that Fe-rich clay minerals such as nontronite can form rapidly under oxidized conditions, which could help explain low concentrations of organics within some smectite-containing rocks or sediments on Mars.« less

Clay mineral formation under oxidized conditions and implications for paleoenvironments and organic preservation on Mars.

PubMed

Gainey, Seth R; Hausrath, Elisabeth M; Adcock, Christopher T; Tschauner, Oliver; Hurowitz, Joel A; Ehlmann, Bethany L; Xiao, Yuming; Bartlett, Courtney L

2017-11-01

Clay mineral-bearing locations have been targeted for martian exploration as potentially habitable environments and as possible repositories for the preservation of organic matter. Although organic matter has been detected at Gale Crater, Mars, its concentrations are lower than expected from meteoritic and indigenous igneous and hydrothermal reduced carbon. We conducted synthesis experiments motivated by the hypothesis that some clay mineral formation may have occurred under oxidized conditions conducive to the destruction of organics. Previous work has suggested that anoxic and/or reducing conditions are needed to synthesize the Fe-rich clay mineral nontronite at low temperatures. In contrast, our experiments demonstrated the rapid formation of Fe-rich clay minerals of variable crystallinity from aqueous Fe 3+ with small amounts of aqueous Mg 2+ . Our results suggest that Fe-rich clay minerals such as nontronite can form rapidly under oxidized conditions, which could help explain low concentrations of organics within some smectite-containing rocks or sediments on Mars.

SHOC1 is a ERCC4-(HhH)2-like protein, integral to the formation of crossover recombination intermediates during mammalian meiosis.

PubMed

Guiraldelli, Michel F; Felberg, Anna; Almeida, Luciana P; Parikh, Aniruddha; de Castro, Rodrigo O; Pezza, Roberto J

2018-05-01

Chromosome segregation errors during meiosis result in the formation of aneuploid gametes and are the leading cause of pregnancy loss and birth defects in humans. Proper chromosome segregation requires pairwise associations of maternal and paternal homologous chromosomes. Chiasmata, which are the cytological manifestations of crossovers (COs), provide a physical link that holds the homologs together as a pair, facilitating their orientation on the spindle at meiosis I. Although CO-promoting activities ensure a balanced number and position of COs, their identity and mechanism of action in mammals remain understudied. Previous work in yeast and Arabidopsis has shown that Zip2 and Shoc1 are ortholog proteins with an important role in promoting the formation of COs. Our work is the first study in mammals showing the in vivo and in vitro function of mouse and human SHOC1. We show that purified recombinant human SHOC1, an XPF/MUS81 family member, preferentially binds branched DNA molecules but apparently lacks in vitro endonuclease activity, despite its conserved ERCC4-(HhH)2 core structure. Cytological observations suggest that initial steps of recombination are normal in a majority of spermatocytes from SHOC1 hypomorphic mice. However, late stages of recombination appear abnormal, as chromosomal localization of MLH1 is reduced. In agreement, chiasma formation is reduced, and cells arrest at metaphase I with a few lagging chromosomes and subsequent apoptosis. This analysis of SHOC1-deficient mice and the selective localization of SHOC1 to a subset of recombination sites show that SHOC1 acts at key mid-stage steps of the CO formation process. The formation of chromosome axial elements and homologous pairing are apparently normal, but synapsis is altered with SYCP1 frequently failing to extend the full length of the chromosome axes. Finally, we describe that SHOC1 interacts with TEX11, another protein important for the formation of COs, connecting SHOC1 to chromosome axis and structure.

Degradation of Gate Oxide Integrity by Formation of Tiny Holes by Metal Contamination of Raw Wafer

NASA Astrophysics Data System (ADS)

Chen, Po-Ying

2008-12-01

Heavy metal atoms (such as Cu) spontaneously undergo a dissolution reaction when they come into contact with silicon. Most investigations in this extensively studied area begin with a clean, bare wafer and focus on metal contamination during the IC manufacturing stage. In this work, the effect of Fe and Cu contamination on raw wafers was elucidated. When two batches of raw wafers are scheduled, one uncontaminated and one with various degrees of contamination ranging from 0.1 to 10 ppb undergo the typical steps of the 90 nm LOGIC complementary metal-oxide-semiconductor (CMOS) semiconductor manufacturing process. The main contribution of this work is the discovery of a previously unidentified cause of gate oxide leakage: the formation of tiny holes by metal contamination during the wafer manufacturing stage. Because tiny holes are formed, a spontaneous reaction can occur even with at very low metal concentration (0.2 ppb), revealing that the wafer manufacturing stage is more vulnerable to metal contamination than the IC manufacturing stage and therefore requires stricter contamination control.

Measure Guideline: Guide to Attic Air Sealing

DOE Office of Scientific and Technical Information (OSTI.GOV)

Lstiburek, J.

2014-09-01

The Guide to Attic Air Sealing was completed in 2010 and although not in the standard Measure Guideline format, is intended to be a Measure Guideline on Attic Air Sealing. The guide was reviewed during two industry stakeholders meetings held on December 18th, 2009 and January 15th, 2010, and modified based on the comments received. Please do not make comments on the Building America format of this document. The purpose of the Guide to Attic Air Sealing is to provide information and recommendations for the preparation work necessary prior to adding attic insulation. Even though the purpose of this guidemore » is to save energy - health, safety and durability should not be compromised by energy efficiency. Accordingly, combustion safety and ventilation for indoor air quality are addressed first. Durability and attic ventilation then follow. Finally, to maximize energy savings, air sealing is completed prior to insulating. The guide is intended for home remodelers, builders, insulation contractors, mechanical contractors, general contractors who have previously done remodeling and homeowners as a guide to the work that needs to be done.« less

Font group identification using reconstructed fonts

NASA Astrophysics Data System (ADS)

Cutter, Michael P.; van Beusekom, Joost; Shafait, Faisal; Breuel, Thomas M.

2011-01-01

Ideally, digital versions of scanned documents should be represented in a format that is searchable, compressed, highly readable, and faithful to the original. These goals can theoretically be achieved through OCR and font recognition, re-typesetting the document text with original fonts. However, OCR and font recognition remain hard problems, and many historical documents use fonts that are not available in digital forms. It is desirable to be able to reconstruct fonts with vector glyphs that approximate the shapes of the letters that form a font. In this work, we address the grouping of tokens in a token-compressed document into candidate fonts. This permits us to incorporate font information into token-compressed images even when the original fonts are unknown or unavailable in digital format. This paper extends previous work in font reconstruction by proposing and evaluating an algorithm to assign a font to every character within a document. This is a necessary step to represent a scanned document image with a reconstructed font. Through our evaluation method, we have measured a 98.4% accuracy for the assignment of letters to candidate fonts in multi-font documents.

Formation of outflow channels on Mars: Testing the origin of Reull Vallis in Hesperia Planum by large-scale lava-ice interactions and top-down melting

NASA Astrophysics Data System (ADS)

Cassanelli, James P.; Head, James W.

2018-05-01

The Reull Vallis outflow channel is a segmented system of fluvial valleys which originates from the volcanic plains of the Hesperia Planum region of Mars. Explanation of the formation of the Reull Vallis outflow channel by canonical catastrophic groundwater release models faces difficulties with generating sufficient hydraulic head, requiring unreasonably high aquifer permeability, and from limited recharge sources. Recent work has proposed that large-scale lava-ice interactions could serve as an alternative mechanism for outflow channel formation on the basis of predictions of regional ice sheet formation in areas that also underwent extensive contemporaneous volcanic resurfacing. Here we assess in detail the potential formation of outflow channels by large-scale lava-ice interactions through an applied case study of the Reull Vallis outflow channel system, selected for its close association with the effusive volcanic plains of the Hesperia Planum region. We first review the geomorphology of the Reull Vallis system to outline criteria that must be met by the proposed formation mechanism. We then assess local and regional lava heating and loading conditions and generate model predictions for the formation of Reull Vallis to test against the outlined geomorphic criteria. We find that successive events of large-scale lava-ice interactions that melt ice deposits, which then undergo re-deposition due to climatic mechanisms, best explains the observed geomorphic criteria, offering improvements over previously proposed formation models, particularly in the ability to supply adequate volumes of water.

The Maximum Mass Solar Nebula and the early formation of planets

NASA Astrophysics Data System (ADS)

Nixon, C. J.; King, A. R.; Pringle, J. E.

2018-03-01

Current planet formation theories provide successful frameworks with which to interpret the array of new observational data in this field. However, each of the two main theories (core accretion, gravitational instability) is unable to explain some key aspects. In many planet formation calculations, it is usual to treat the initial properties of the planet forming disc (mass, radius, etc.) as free parameters. In this paper, we stress the importance of setting the formation of planet forming discs within the context of the formation of the central stars. By exploring the early stages of disc formation, we introduce the concept of the Maximum Mass Solar Nebula (MMSN), as opposed to the oft-used Minimum Mass Solar Nebula (here mmsn). It is evident that almost all protoplanetary discs start their evolution in a strongly self-gravitating state. In agreement with almost all previous work in this area, we conclude that on the scales relevant to planet formation these discs are not gravitationally unstable to gas fragmentation, but instead form strong, transient spiral arms. These spiral arms can act as efficient dust traps allowing the accumulation and subsequent fragmentation of the dust (but not the gas). This phase is likely to populate the disc with relatively large planetesimals on short timescales while the disc is still veiled by a dusty-gas envelope. Crucially, the early formation of large planetesimals overcomes the main barriers remaining within the core accretion model. A prediction of this picture is that essentially all observable protoplanetary discs are already planet hosting.

The Maximum Mass Solar Nebula and the early formation of planets

NASA Astrophysics Data System (ADS)

Nixon, C. J.; King, A. R.; Pringle, J. E.

2018-07-01

Current planet formation theories provide successful frameworks with which to interpret the array of new observational data in this field. However, each of the two main theories (core accretion, gravitational instability) is unable to explain some key aspects. In many planet formation calculations, it is usual to treat the initial properties of the planet-forming disc (mass, radius, etc.) as free parameters. In this paper, we stress the importance of setting the formation of planet-forming discs within the context of the formation of the central stars. By exploring the early stages of disc formation, we introduce the concept of the Maximum Mass Solar Nebula, as opposed to the oft-used minimum mass solar nebula. It is evident that almost all protoplanetary discs start their evolution in a strongly self-gravitating state. In agreement with almost all previous work in this area, we conclude that on the scales relevant to planet formation these discs are not gravitationally unstable to gas fragmentation, but instead form strong, transient spiral arms. These spiral arms can act as efficient dust traps allowing the accumulation and subsequent fragmentation of the dust (but not the gas). This phase is likely to populate the disc with relatively large planetesimals on short time-scales while the disc is still veiled by a dusty-gas envelope. Crucially, the early formation of large planetesimals overcomes the main barriers remaining within the core accretion model. A prediction of this picture is that essentially all observable protoplanetary discs are already planet hosting.

Two phase formation of massive elliptical galaxies: study through cross-correlation including spatial effect

NASA Astrophysics Data System (ADS)

Modak, Soumita; Chattopadhyay, Tanuka; Chattopadhyay, Asis Kumar

2017-11-01

Area of study is the formation mechanism of the present-day population of elliptical galaxies, in the context of hierarchical cosmological models accompanied by accretion and minor mergers. The present work investigates the formation and evolution of several components of the nearby massive early-type galaxies (ETGs) through cross-correlation function (CCF), using the spatial parameters right ascension (RA) and declination (DEC), and the intrinsic parameters mass (M_{*}) and size. According to the astrophysical terminology, here these variables, namely mass, size, RA and DEC are termed as parameters, whereas the unknown constants involved in the kernel function are called hyperparameters. Throughout this paper, the parameter size is used to represent the effective radius (Re). Following Huang et al. (2013a), each nearby ETG is divided into three parts on the basis of its Re value. We study the CCF between each of these three components of nearby massive ETGs and the ETGs in the high redshift range, 0.5< z≤ 2.7. It is found that the innermost components of nearby ETGs are highly correlated with ETGs in the redshift range, 2< z≤ 2.7, known as `red nuggets'. The intermediate and the outermost parts have moderate correlations with ETGs in the redshift range, 0.5< z≤ 0.75. The quantitative measures are highly consistent with the two phase formation scenario of nearby massive ETGs, as suggested by various authors, and resolve the conflict raised in a previous work (De et al. 2014) suggesting other possibilities for the formation of the outermost part. A probable cause of this improvement is the inclusion of the spatial effects in addition to the other parameters in the study.

A homogeneous spectroscopic analysis of host stars of transiting planets

NASA Astrophysics Data System (ADS)

Ammler-von Eiff, M.; Santos, N. C.; Sousa, S. G.; Fernandes, J.; Guillot, T.; Israelian, G.; Mayor, M.; Melo, C.

2009-11-01

Context: The analysis of transiting extra-solar planets provides an enormous amount of information about the formation and evolution of planetary systems. A precise knowledge of the host stars is necessary to derive the planetary properties accurately. The properties of the host stars, especially their chemical composition, are also of interest in their own right. Aims: Information about planet formation is inferred by, among others, correlations between different parameters such as the orbital period and the metallicity of the host stars. The stellar properties studied should be derived as homogeneously as possible. The present work provides new, uniformly derived parameters for 13 host stars of transiting planets. Methods: Effective temperature, surface gravity, microturbulence parameter, and iron abundance were derived from spectra of both high signal-to-noise ratio and high resolution by assuming iron excitation and ionization equilibria. Results: For some stars, the new parameters differ from previous determinations, which is indicative of changes in the planetary radii. A systematic offset in the abundance scale with respect to previous assessments is found for the TrES and HAT objects. Our abundance measurements are remarkably robust in terms of the uncertainties in surface gravities. The iron abundances measured in the present work are supplemented by all previous determinations using the same analysis technique. The distribution of iron abundance then agrees well with the known metal-rich distribution of planet host stars. To facilitate future studies, the spectroscopic results of the current work are supplemented by the findings for other host stars of transiting planets, for a total dataset of 50 objects. Based on observations made with the Italian Telescopio Nazionale Galileo (TNG) operated on the island of La Palma by the Fundación Galileo Galilei of the INAF (Istituto Nazionale di Astrofisica) at the Spanish Observatorio del Roque de los Muchachos of the Instituto de Astrofisica de Canarias. Based in part on observations made at Observatoire de Haute Provence (CNRS), France. Based on observations made with ESO Telescopes at the La Silla Paranal Observatory under programme ID 080.C-0661.

IVS Working Group 4: VLBI Data Structures

NASA Technical Reports Server (NTRS)

Gipson, John

2010-01-01

In 2007 the IVS Directing Board established IVS Working Group 4 on VLBI Data Structures. This note discusses the current VLBI data format, goals for a new format, the history and formation of the Working Group, and a timeline for the development of a new VLBI data format.

Origin of the asteroid belt

NASA Technical Reports Server (NTRS)

Wetherill, George W.

1989-01-01

Earlier and current concepts relevant to the origin of the asteroid belt are discussed and are considered in the framework of the solar system origin. Numerical and analytical solutions of the dynamical theory of planetesimal accumulation are characterized by bifurcations into runaway and nonrunaway solutions, and it is emphasized that the differences in time scales resulting from runaway and nonrunaway growth can be more important than conventional time scale differences determined by heliocentric distances. It is concluded that, in principle, it is possible to combine new calculations with previous work to formulate a theory of the asteroidal accumulation consistent with the meteoritic record and with work on the formation of terrestrial planets. Problems remaining to be addressed before a mature theory can be formulated are discussed.

Presence of Li Clusters in Molten LiCl-Li

PubMed Central

Merwin, Augustus; Phillips, William C.; Williamson, Mark A.; Willit, James L.; Motsegood, Perry N.; Chidambaram, Dev

2016-01-01

Molten mixtures of lithium chloride and metallic lithium are of significant interest in various metal oxide reduction processes. These solutions have been reported to exhibit seemingly anomalous physical characteristics that lack a comprehensive explanation. In the current work, the physical chemistry of molten solutions of lithium chloride and metallic lithium, with and without lithium oxide, was investigated using in situ Raman spectroscopy. The Raman spectra obtained from these solutions were in agreement with the previously reported spectrum of the lithium cluster, Li8. This observation is indicative of a nanofluid type colloidal suspension of Li8 in a molten salt matrix. It is suggested that the formation and suspension of lithium clusters in lithium chloride is the cause of various phenomena exhibited by these solutions that were previously unexplainable. PMID:27145895

Complex formation of vanadium(V) with resorcylalhydrazides of carboxylic acids

DOE Office of Scientific and Technical Information (OSTI.GOV)

Dudarev, V.I.; Dolgorev, V.A.; Volkov, A.N.

1986-08-01

In this work, a previous investigation of hydrazine derivatives as analytical reagents for vanadium(V) was continued. The authors studied arylalhydrazones -- derivatives of resorcylalhydrazides of anisic (RHASA), anthranilic (RHANA), and benzoic (RHBA) acids. The reagents presented differ from those studied previously by the presence of a second hydroxy group in the para-position of the benzene ring -the resorcinol fragment -- and substituents in the benzoin fragment. Such changes made it possible to increase the solubility of the reagents in aqueous medium and to estimate the change in the main spectrophotometric parameters of the analytical reaction. A rapid method was developedmore » for the determination of vanadium in steels with the resorcylalhydrazide of anthranilic acid. The minimum determinable vanadium content is 0.18 micrograms/ml.« less

Bandwidth reduction for video-on-demand broadcasting using secondary content insertion

NASA Astrophysics Data System (ADS)

Golynski, Alexander; Lopez-Ortiz, Alejandro; Poirier, Guillaume; Quimper, Claude-Guy

2005-01-01

An optimal broadcasting scheme under the presence of secondary content (i.e. advertisements) is proposed. The proposed scheme works both for movies encoded in a Constant Bit Rate (CBR) or a Variable Bit Rate (VBR) format. It is shown experimentally that secondary content in movies can make Video-on-Demand (VoD) broadcasting systems more efficient. An efficient algorithm is given to compute the optimal broadcasting schedule with secondary content, which in particular significantly improves over the best previously known algorithm for computing the optimal broadcasting schedule without secondary content.

The Make 2D-DB II package: conversion of federated two-dimensional gel electrophoresis databases into a relational format and interconnection of distributed databases.

PubMed

Mostaguir, Khaled; Hoogland, Christine; Binz, Pierre-Alain; Appel, Ron D

2003-08-01

The Make 2D-DB tool has been previously developed to help build federated two-dimensional gel electrophoresis (2-DE) databases on one's own web site. The purpose of our work is to extend the strength of the first package and to build a more efficient environment. Such an environment should be able to fulfill the different needs and requirements arising from both the growing use of 2-DE techniques and the increasing amount of distributed experimental data.

Software engineering and data management for automated payload experiment tool

NASA Technical Reports Server (NTRS)

Maddux, Gary A.; Provancha, Anna; Chattam, David

1994-01-01

The Microgravity Projects Office identified a need to develop a software package that will lead experiment developers through the development planning process, obtain necessary information, establish an electronic data exchange avenue, and allow easier manipulation/reformatting of the collected information. An MS-DOS compatible software package called the Automated Payload Experiment Tool (APET) has been developed and delivered. The objective of this task is to expand on the results of the APET work previously performed by UAH and provide versions of the software in a Macintosh and Windows compatible format.

Aqueous mineralogy and stratigraphy at and around the proposed Mawrth Vallis MSL Landing Site: New insights into the aqueous history of the region

USGS Publications Warehouse

Dobrea, Eldar Z. Noe; Michalski, Joseph; Swayze, Gregg

2011-01-01

In this work, we have confirmed the mineralogical stratigraphy previously inferred by other authors, but also demonstrate the presence of additional minerals, including a possible acid-leaching product near the top of the sequence, an Mh-OH bearing phyllosilicate at the to of the sequence, and potentially a Ca-sulfate at the bottom of the phyllosilicate sequence. The latter has important implications regarding the relative timing of sulfate vs clay formation on Mars.

Studies of extra-solar Oort Clouds and the Kuiper disk

NASA Technical Reports Server (NTRS)

Stern, S. Alan

1992-01-01

In 1991 we detected extended 1.1 mm emission around Fomalhaut (alpha PsA) at distances in order of magnitude beyond previous detections. This emission is plausibly related to the presence of an extended comet cloud, like our Oort Cloud, and may therefore represent indirect evidence for the formation of a planetary system at Fomalhaut. We propose now to extend this work to create a map of the angular and spatial extent of this emission. Fomalhaut is the only known main-sequence, submm-resolved IR excess source besides beta Pic.

Computational Study of the Adsorption of Dimethyl Methylphosphonate (DMMP) on the (010) Surface of Anatase TiO2 With and Without Faceting

DTIC Science & Technology

2009-12-05

surface area of anatase nanocrystals [6] and to be es- pecially active in photocatalysis [7]. Recent work by Dzwigaj et al. [8] has clearly shown that the...two-fold-coordinated (O2c) sites can also be involved in hydrogen bond (H-bond) formation. The effects, on the structure of the (100) and other...To reduce the computational cost , geometry optimization was done at the restricted Hartree Fock (RHF) level. This has previously been shown [36,37

Observations and implications of large-amplitude longitudinal oscillations in a solar filament

DOE Office of Scientific and Technical Information (OSTI.GOV)

Luna, M.; Knizhnik, K.; Muglach, K.

On 2010 August 20, an energetic disturbance triggered large-amplitude longitudinal oscillations in a nearby filament. The triggering mechanism appears to be episodic jets connecting the energetic event with the filament threads. In the present work, we analyze this periodic motion in a large fraction of the filament to characterize the underlying physics of the oscillation as well as the filament properties. The results support our previous theoretical conclusions that the restoring force of large-amplitude longitudinal oscillations is solar gravity, and the damping mechanism is the ongoing accumulation of mass onto the oscillating threads. Based on our previous work, we usedmore » the fitted parameters to determine the magnitude and radius of curvature of the dipped magnetic field along the filament, as well as the mass accretion rate onto the filament threads. These derived properties are nearly uniform along the filament, indicating a remarkable degree of cohesiveness throughout the filament channel. Moreover, the estimated mass accretion rate implies that the footpoint heating responsible for the thread formation, according to the thermal nonequilibrium model, agrees with previous coronal heating estimates. We estimate the magnitude of the energy released in the nearby event by studying the dynamic response of the filament threads, and discuss the implications of our study for filament structure and heating.« less

Glycan-functionalized diamond nanoparticles as potent E. coli anti-adhesives.

PubMed

Barras, Alexandre; Martin, Fernando Ariel; Bande, Omprakash; Baumann, Jean-Sébastien; Ghigo, Jean-Marc; Boukherroub, Rabah; Beloin, Christophe; Siriwardena, Aloysius; Szunerits, Sabine

2013-03-21

Bacterial attachment and subsequent biofilm formation on biotic surfaces or medical devices is an increasing source of infections in clinical settings. A large proportion of these biofilm-related infections are caused by Escherichia coli, a major nosocomial pathogen, in which the major adhesion factor is the FimH adhesin located at the tip of type 1 fimbriae. Inhibition of FimH-mediated adhesion has been identified as an efficient antibiotic-alternative strategy to potentially reduce E. coli-related infections. In this article we demonstrate that nanodiamond particles, covently modified with mannose moieties by a "click" chemistry approach, are able to efficiently inhibit E. coli type 1 fimbriae-mediated adhesion to eukaryotic cells with relative inhibitory potency (RIP) of as high as 9259 (bladder cell adhesion assay), which is unprecedented when compared with RIP values previously reported for alternate multivalent mannose-functionalized nanostructures designed to inhibit E. coli adhesion. Also remarkable is that these novel mannose-modified NDs reduce E. coli biofilm formation, a property previously not observed for multivalent glyco-nanoparticles and rarely demonstrated for other multivalent or monovalent mannose glycans. This work sets the stage for the further evaluation of these novel NDs as an anti-adhesive therapeutic strategy against E. coli-derived infections.

The role of statistical fluctuations on the stability of shockwaves through gases with activated inelastic collisions

NASA Astrophysics Data System (ADS)

Sirmas, Nick; Radulescu, Matei

2016-11-01

The present study addresses the stability of piston driven shock waves through a system of hard particles subject to activated inelastic collisions. Molecular Dynamics (MD) simulations have previously revealed an unstable structure for such a system in the form of high density non-uniformities and convective rolls within the shock structure. The work has now been extended to the continuum level by considering the Euler and Navier-Stokes equations for granular gases with a modified cooling rate to include an impact threshold necessary for inelastic collisions. We find that the pattern formations produced in MD can be reproduced at the continuum level by continually perturbing the incoming density field. By varying the perturbation amplitude and wavelength, we find that fluctuations consistent with the statistical fluctuations seen in MD yield similar instabilities to those previously observed. While the inviscid model predicts a highly chaotic structure from these perturbations, the inclusion of viscosity and heat conductivity yields equivalent wavelengths of pattern formations to those seen in MD, which is equal to the relaxation length scale of the dissipative shock structure. The authors acknowledged funding through the Alexander Graham Bell Canada Graduate Scholarship (NSERC) and Ontario Graduate Scholarship.

Multiple pathways to identification: exploring the multidimensionality of academic identity formation in ethnic minority males.

PubMed

Matthews, Jamaal S

2014-04-01

Empirical trends denote the academic underachievement of ethnic minority males across various academic domains. Identity-based explanations for this persistent phenomenon describe ethnic minority males as disidentified with academics, alienated, and oppositional. The present work interrogates these theoretical explanations and empirically substantiates a multidimensional lens for discussing academic identity formation within 330 African American and Latino early-adolescent males. Both hierarchical and iterative person-centered methods were utilized and reveal 5 distinct profiles derived from 6 dimensions of academic identity. These profiles predict self-reported classroom grades, mastery orientation, and self-handicapping in meaningful and varied ways. The results demonstrate multiple pathways to motivation and achievement, challenging previous oversimplified stereotypes of marginalized males. This exploratory study triangulates unique interpersonal and intrapersonal attributes for promoting healthy identity development and academic achievement among ethnic minority adolescent males.

Immunomodulatory effects of amniotic membrane matrix incorporated into collagen scaffolds.

PubMed

Hortensius, Rebecca A; Ebens, Jill H; Harley, Brendan A C

2016-06-01

Adult tendon wound repair is characterized by the formation of disorganized collagen matrix which leads to decreases in mechanical properties and scar formation. Studies have linked this scar formation to the inflammatory phase of wound healing. Instructive biomaterials designed for tendon regeneration are often designed to provide both structural and cellular support. In order to facilitate regeneration, success may be found by tempering the body's inflammatory response. This work combines collagen-glycosaminoglycan scaffolds, previously developed for tissue regeneration, with matrix materials (hyaluronic acid and amniotic membrane) that have been shown to promote healing and decreased scar formation in skin studies. The results presented show that scaffolds containing amniotic membrane matrix have significantly increased mechanical properties and that tendon cells within these scaffolds have increased metabolic activity even when the media is supplemented with the pro-inflammatory cytokine interleukin-1 beta. Collagen scaffolds containing hyaluronic acid or amniotic membrane also temper the expression of genes associated with the inflammatory response in normal tendon healing (TNF-α, COLI, MMP-3). These results suggest that alterations to scaffold composition, to include matrix known to decrease scar formation in vivo, can modify the inflammatory response in tenocytes. © 2016 Wiley Periodicals, Inc. J Biomed Mater Res Part A: 104A: 1332-1342, 2016. © 2016 Wiley Periodicals, Inc.

A Rosa canina WUSCHEL-related homeobox gene, RcWOX1, is involved in auxin-induced rhizoid formation.

PubMed

Gao, Bin; Wen, Chao; Fan, Lusheng; Kou, Yaping; Ma, Nan; Zhao, Liangjun

2014-12-01

Homeobox (HB) proteins are important transcription factors that regulate the developmental decisions of eukaryotes. WUSCHEL-related homeobox (WOX) transcription factors, known as a plant-specific HB family, play a key role in plant developmental processes. Our previous work has indicated that rhizoids are induced by auxin in rose (Rosa spp.), which acts as critical part of an efficient plant regeneration system. However, the function of WOX genes in auxin-induced rhizoid formation remains unclear. Here, we isolated and characterized a WUSCHEL-related homeobox gene from Rosa canina, RcWOX1, containing a typical homeodomain with 65 amino acid residues. Real-time reverse transcription PCR (qRT-PCR) analysis revealed that RcWOX1 was expressed in the whole process of callus formation and in the early stage of rhizoid formation. Moreover, its expression was induced by auxin treatment. In Arabidopsis transgenic lines expressing the RcWOX1pro::GUS and 35S::GFP-RcWOX1, RcWOX1 was specifically expressed in roots and localized to the nucleus. Overexpression of RcWOX1 in Arabidopsis increased lateral root density and induced upregulation of PIN1 and PIN7 genes. Therefore, we postulated that RcWOX1 is a functional transcription factor that plays an essential role in auxin-induced rhizoid formation.

Role of disulfide cross-linking of mutant SOD1 in the formation of inclusion-body-like structures.

PubMed

Roberts, Brittany L T; Patel, Kinaree; Brown, Hilda H; Borchelt, David R

2012-01-01

Pathologic aggregates of superoxide dismutase 1 (SOD1) harboring mutations linked to familial amyotrophic lateral sclerosis (fALS) have been shown to contain aberrant intermolecular disulfide cross-links. In prior studies, we observed that intermolecular bonding was not necessary in the formation of detergent- insoluble SOD1 complexes by mutant SOD1, but we were unable to assess whether this type of bonding may be important for pathologic inclusion formation. In the present study, we visually assess the formation of large inclusions by fusing mutant SOD1 to yellow fluorescent protein (YFP). Experimental constructs possessing mutations at all cysteine residues in SOD1 (sites 6, 57, 111, and 146 to F,S,Y,R or G,S,Y,R, respectively) were shown to maintain a high propensity of inclusion formation despite the inability to form disulfide cross-links. Interestingly, although aggregates form when all cysteines were mutated, double mutants of the ALS mutation C6G with an experimental mutation C111S exhibited low aggregation propensity. Overall, this study is an extension of previous work demonstrating that cysteine residues in mutant SOD1 play a role in modulating aggregation and that intermolecular disulfide bonds are not required to produce large intracellular inclusion-like structures.

Investigating the Formation Mechanisms and Inorganic Precursors of Formate and Acetate in Lost City Hydrothermal Fluids

NASA Astrophysics Data System (ADS)

Lang, S. Q.; Bernasconi, S. M.; Früh-Green, G.

2010-12-01

Fluids from the Lost City Hydrothermal Field are rich in hydrogen and methane, with high pHs (9 - 11), as a result of serpentinization reactions at moderate temperatures of approximately 120-200°C. It has been predicted that organic carbon compounds would form abiologically under these chemical and thermal conditions from inorganic precursors, in the form of hydrocarbons and organic acids. Previous work has demonstrated the presence of high concentrations of both formate and acetate in the Lost City fluids [Lang et al., 2010, GCA]. Formate is the second most prevalent carbon species in the fluids and may provide local microbial communities with a necessary carbon source in the face of low dissolved inorganic carbon concentrations. The goals of this study are to constrain the formation mechanisms of these organic acids (abiotic vs. biotic) and to identify their inorganic precursors. Formate and acetate were isolated from multiple fluid samples by preparative high-performance liquid chromatography for isotopic analysis. The δ13C of formate is similar to that of Lost City methane, and consistent with an abiological origin. The isotopic signature of acetate is significantly different from these values, and may be indicative of a biological source. Radiocarbon measurements of the isolated formate are in progress and should allow us to determine if the precursor carbon is derived from a mantle or deep-seawater source. Alkaline hydrothermal systems have been proposed as potential sites to the origin of life and formate has been proposed as a critical intermediate towards the kinds of reduced carbon species found in biochemistry. Evidence of an abiological formation mechanism of formate at Lost City may significantly further our understanding of prebiotic chemistry.

Lipid droplets formation in human endothelial cells in response to polyunsaturated fatty acids and 1-methyl-nicotinamide (MNA); confocal Raman imaging and fluorescence microscopy studies.

PubMed

Majzner, Katarzyna; Chlopicki, Stefan; Baranska, Malgorzata

2016-04-01

In this work the formation of lipid droplets (LDs) in human endothelial cells culture in response to the uptake of polyunsaturated fatty acids (PUFAs) was studied. Additionally, an effect of 1-methylnicotinamide (MNA) on the process of LDs formation was investigated. LDs have been previously described structurally and to some degree biochemically, however neither the precise function of LDs nor the factors responsible for LD induction have been clarified. Lipid droplets, sometimes referred in the literature as lipid bodies are organelles known to regulate neutrophil, eosinophil, or tumor cell functions but their presence and function in the endothelium is largely unexplored. 3D linear Raman spectroscopy was used to study LDs formation in vitro in a single endothelial cell. The method provides information about distribution and size of LDs as well as their composition. The incubation of endothelial cells with various PUFAs resulted in formation of LDs. As a complementary method for LDs identification a fluorescence microscopy was applied. Fluorescence measurements confirmed the Raman results suggesting endothelial cells uptake of PUFAs and subsequent LDs formation in the cytoplasm of the endothelium. Furthermore, MNA seem to potentiate intracellular uptake of PUFAs to the endothelium that may bear physiological and pharmacological significance. Confocal Raman imaging of HAoEC cell with LDs. © 2015 WILEY-VCH Verlag GmbH & Co. KGaA, Weinheim.

Impact and effects of simultaneous MeV-ion irradiation and helium plasma exposure to the formation of tungsten nano-tendrils

NASA Astrophysics Data System (ADS)

Wright, Graham; Kesler, Leigh Ann; Whyte, Dennis

2013-10-01

The extrusion of nano-tendrils from high temperature (>1000 K) tungsten (W) targets exposed to helium (He) plasma ions remains a concern for future fusion reactors. Previous work on the Alcator C-Mod tokamak has demonstrated it is possible to form these structures in a tokamak environment. However, one area where Alcator C-Mod and a fusion reactor differ is total neutron flux at the wall and the displacement damage these neutrons produce in the plasma-facing materials. This dsiplacement damage may affect the size and number He bubbles precipitating in the W target, which is a key factor in the formation and growth of the nano-tendrils. The DIONISOS experiment directly measures the impact of the displacement damage by simultaneously bombarding high temperature W targets with MeV-range ions (to simulate the displacement damage caused by neutron flux) and high flux of He plasma ions. Different combinations of irradiating ion species and W target temperatures are used to vary the different processes and rates that are involved such as He trapping rate, vacancy production and annealing rates, and nano-tendril growth rate. The nano-tendril growth is characterized by SEM imaging and focused ion beam (FIB) cross-sectioning and compared to nano-tendril formation without the presence of the irradiating ion beam. This work is supported by US DOE award DE-SC00-02060.

NIMROD Simulations of Spheromak Formation, Magnetic Reconnection and Energy Confinement in SSPX

NASA Astrophysics Data System (ADS)

Hooper, E. B.; Sovinec, C. R.

2005-10-01

The SSPX spheromak is formed and driven by a coaxial electrostatic gun that injects current and magnetic flux. Magnetic fluctuations are associated with the conversion of toroidal to poloidal magnetic flux during formation. After formation, fluctuations that break axisymmetry degrade magnetic surfaces, and are anti-correlated with the core temperature and energy confinement time. We report NIMROD simulations extending earlier work^1 supporting the SSPX experiment through predictions of performance and providing insight. The simulations are in fairly good agreement with features observed in SSPX and underscore the importance of current profile control in mitigating magnetic fluctuation amplitudes and improving confinement. The simulations yield insight into magnetic reconnection and the relationship of fluctuations to field line stochasticity. We have added external circuit equations for the new 32 module capacitor bank in SSPX that will add flexibility in shaping the injector current pulses and substantially increase the injected currents and the magnetic energy. New NIMROD simulations of SSPX lead to higher temperature plasmas than in previous simulations. *Work supported by U.S. DOE, under Contr. No. W-7405-ENG-48 at U. Cal. LLNL and under grant FG02-01ER54661 at U. Wisc Madison. ^1C. R. Sovinec, B. I. Cohen, et al., Phys. Rev. Lett. 94, 035003 (2005); B. I. Cohen, E. B. Hooper, et al., Phys. Plasmas 12, 056106 (2005).

Dissolution of Olivine, Siderite, and Basalt at 80 Deg C in 0.1 M H2SO4 in a Flow Through Process: Insights into Acidic Weathering on Mars

NASA Technical Reports Server (NTRS)

Golden, D. C.; Ming, D. W.; Hausrath, E. M.; Morris, R. V.; Niles, P. B.; Achilles, C. N.; Ross, D. K.; Cooper, B. L.; Gonzalex, C. P.; Mertzman, S. A.

2012-01-01

The occurrence of jarosite, other sulfates (e.g., Mg-and Ca-sulfates), and hematite along with silicic-lastic materials in outcrops of sedimentary materials at Meridiani Planum (MP) and detection of silica rich deposits in Gusev crater, Mars, are strong indicators of local acidic aqueous processes [1,2,3,4,5]. The formation of sediments at Meridiani Planum may have involved the evaporation of fluids derived from acid weathering of Martian basalts and subsequent diagenesis [6,7]. Also, our previous work on acid weathering of basaltic materials in a closed hydro-thermal system was focused on the mineralogy of the acid weathering products including the formation of jarosite and gray hematite spherules [8,9,10]. The object of this re-search is to extend our earlier qualitative work on acidic weathering of rocks to determine acidic dissolution rates of Mars analog basaltic materials at 80 C using a flow-thru reactor. We also characterized residual phases, including poorly crystalline or amorphous phases and precipitates, that remained after the treatments of olivine, siderite, and basalt which represent likely MP source rocks. This study is a stepping stone for a future simulation of the formation of MP rocks under a range of T and P.

Effect of fuel nitrogen and hydrogen content on emissions in hydrocarbon combustion

NASA Technical Reports Server (NTRS)

Bittker, D. A.; Wolfbrandt, G.

1981-01-01

How the emissions of nitrogen oxides and carbon monoxide are affected by: (1) the decreased hydrogen content and (2) the increased organic nitrogen content of coal derived fuels is investigated. Previous CRT experimental work in a two stage flame tube has shown the effectiveness of rich lean two stage combustion in reducing fuel nitrogen conversion to nitrogen oxides. Previous theoretical work gave preliminary indications that emissions trends from the flame tube experiment could be predicted by a two stage, well stirred reactor combustor model using a detailed chemical mechanism for propane oxidation and nitrogen oxide formation. Additional computations are reported and comparisons with experimental results for two additional fuels and a wide range of operating conditions are given. Fuels used in the modeling are pure propane, a propane toluene mixture and pure toluene. These give hydrogen contents 18, 11 and 9 percent by weight, respectively. Fuel bound nitrogen contents of 0.5 and 1.0 percent were used. Results are presented for oxides of nitrogen and also carbon monoxide concentrations as a function of primary equivalence ratio, hydrogen content and fuel bound nitrogen content.

The Influence of a Substellar Continent on the Climate of a Tidally Locked Exoplanet

NASA Astrophysics Data System (ADS)

Lewis, Neil T.; Lambert, F. Hugo; Boutle, Ian A.; Mayne, Nathan J.; Manners, James; Acreman, David M.

2018-02-01

Previous studies have demonstrated that continental carbon-silicate weathering is important to the continued habitability of a terrestrial planet. Despite this, few studies have considered the influence of land on the climate of a tidally locked planet. In this work we use the Met Office Unified Model, coupled to a land-surface model, to investigate the climate effects of a continent located at the substellar point. We choose to use the orbital and planetary parameters of Proxima Centauri B as a template, to allow comparison with the work of others. A region of the surface where T s > 273.15 K is always retained, and previous conclusions on the habitability of Proxima Centauri B remain intact. We find that substellar land causes global cooling and increases day–night temperature contrasts by limiting heat redistribution. Furthermore, we find that substellar land is able to introduce a regime change in the atmospheric circulation. Specifically, when a continent offset to the east of the substellar point is introduced, we observe the formation of two mid-latitude counterrotating jets, and a substantially weakened equatorial superrotating jet.

Representing exact number visually using mental abacus.

PubMed

Frank, Michael C; Barner, David

2012-02-01

Mental abacus (MA) is a system for performing rapid and precise arithmetic by manipulating a mental representation of an abacus, a physical calculation device. Previous work has speculated that MA is based on visual imagery, suggesting that it might be a method of representing exact number nonlinguistically, but given the limitations on visual working memory, it is unknown how MA structures could be stored. We investigated the structure of the representations underlying MA in a group of children in India. Our results suggest that MA is represented in visual working memory by splitting the abacus into a series of columns, each of which is independently stored as a unit with its own detailed substructure. In addition, we show that the computations of practiced MA users (but not those of control participants) are relatively insensitive to verbal interference, consistent with the hypothesis that MA is a nonlinguistic format for exact numerical computation.

Statistical Ring Catenation under Thermodynamic Control: Should the Jacobson-Stockmayer Cyclization Theory Take into Account Catenane Formation?

PubMed

Di Stefano, Stefano; Ercolani, Gianfranco

2017-01-26

An extension of the Jacobson-Stockmayer theory is presented to include the reversible formation of [2]catenanes in a ring-chain system under thermodynamic control. The extended theory is based on the molar catenation constant, measuring the ease of catenation of two ring oligomers, whose expression was obtained in a previous work. Two scenarios have been considered: that of "thick" (hydrocarbon-like) chains and that of "thin" (DNA-like) chains. In the case of "thick" chains, the formation of catenanes can be neglected, unless in the unlikely case of a very large value of the equilibrium constant for linear propagation (K ≈ 10 8 mol -1 L, or larger). For K tending to infinity, the system becomes a chain-free system where only ring-catenane equilibria occur. Under this condition, there is a critical concentration below which only rings are present at equilibrium and above which the ring fraction remains constant, and the excess monomer is converted only into catenanes. In the case of "thin" chains, the formation of catenanes cannot be neglected even for values of K as low as 10 2 mol -1 L, thus justifying the use of the extended theory.

The Rcs regulon in Proteus mirabilis: implications for motility, biofilm formation, and virulence.

PubMed

Howery, Kristen E; Clemmer, Katy M; Rather, Philip N

2016-11-01

The overall role of the Rcs phosphorelay in Proteus mirabilis is largely unknown. Previous work had demonstrated that the Rcs phosphorelay represses the flhDC operon and activates the minCDE cell division inhibition system. To identify additional cellular functions regulated by the Rcs phosphorelay, an analysis of RNA-seq data was undertaken. In this report, the results of the RNA-sequencing are discussed with an emphasis on the predicted roles of the Rcs phosphorelay in swarmer cell differentiation, motility, biofilm formation, and virulence. RcsB is shown to activate genes important for differentiation and fimbriae formation, while repressing the expression of genes important for motility and virulence. Additionally, to follow up on the RNA-Seq data, we demonstrate that an rcsB mutant is deficient in its ability to form biofilm and exhibits enhanced virulence in a Galleria mellonella waxworm model. Overall, these results indicate the Rcs regulon in P. mirabilis extends beyond flagellar genes to include those involved in biofilm formation and virulence. Furthermore, the information presented in this study may provide clues to additional roles of the Rcs phosphorelay in other members of the Enterobacteriaceae.

A Novel Role of Periostin in Postnatal Tooth Formation and Mineralization*

PubMed Central

Ma, Dedong; Zhang, Rong; Sun, Yao; Rios, Hector F.; Haruyama, Naoto; Han, Xianglong; Kulkarni, Ashok B.; Qin, Chunlin; Feng, Jian Q.

2011-01-01

Periostin plays multiple functions during development. Our previous work showed a critical role of this disulfide-linked cell adhesion protein in maintenance of periodontium integrity in response to occlusal load. In this study, we attempted to address whether this mechanical response molecule played a direct role in postnatal tooth development. Our key findings are 1) periostin is expressed in preodontoblasts, and odontoblasts; and the periostin-null incisor displayed a massive increase in dentin formation after mastication; 2) periostin is also expressed in the ameloblast cells, and an enamel defect is identified in both the adult-null incisor and molar; 3) deletion of periostin leads to changes in expression profiles of many non-collagenous protein such as DSPP, DMP1, BSP, and OPN in incisor dentin; 4) the removal of a biting force leads to reduction of mineralization, which is partially prevented in periostin-null mice; and 6) both in vitro and in vivo data revealed a direct regulation of periostin by TGF-β1 in dentin formation. In conclusion, periostin plays a novel direct role in controlling postnatal tooth formation, which is required for the integrity of both enamel and dentin. PMID:21131362

Formation of the Wide Asynchronous Binary Asteroid Population

NASA Astrophysics Data System (ADS)

Jacobson, Seth A.; Scheeres, Daniel J.; McMahon, Jay

2014-01-01

We propose and analyze a new mechanism for the formation of the wide asynchronous binary population. These binary asteroids have wide semimajor axes relative to most near-Earth and main belt asteroid systems. Confirmed members have rapidly rotating primaries and satellites that are not tidally locked. Previously suggested formation mechanisms from impact ejecta, from planetary flybys, and directly from rotational fission events cannot satisfy all of the observations. The newly hypothesized mechanism works as follows: (1) these systems are formed from rotational fission, (2) their satellites are tidally locked, (3) their orbits are expanded by the binary Yarkovsky-O'Keefe-Radzievskii-Paddack (BYORP) effect, (4) their satellites desynchronize as a result of the adiabatic invariance between the libration of the secondary and the mutual orbit, and (5) the secondary avoids resynchronization because of the YORP effect. This seemingly complex chain of events is a natural pathway for binaries with satellites that have particular shapes, which define the BYORP effect torque that acts on the system. After detailing the theory, we analyze each of the wide asynchronous binary members and candidates to assess their most likely formation mechanism. Finally, we suggest possible future observations to check and constrain our hypothesis.

Facile Five-Step Heteroepitaxial Growth of GaAs Nanowires on Silicon Substrates and the Twin Formation Mechanism.

PubMed

Yao, Maoqing; Sheng, Chunyang; Ge, Mingyuan; Chi, Chun-Yung; Cong, Sen; Nakano, Aiichiro; Dapkus, P Daniel; Zhou, Chongwu

2016-02-23

Monolithic integration of III-V semiconductors with Si has been pursued for some time in the semiconductor industry. However, the mismatch of lattice constants and thermal expansion coefficients represents a large technological challenge for the heteroepitaxial growth. Nanowires, due to their small lateral dimension, can relieve strain and mitigate dislocation formation to allow single-crystal III-V materials to be grown on Si. Here, we report a facile five-step heteroepitaxial growth of GaAs nanowires on Si using selective area growth (SAG) in metalorganic chemical vapor deposition, and we further report an in-depth study on the twin formation mechanism. Rotational twin defects were observed in the nanowire structures and showed strong dependence on the growth condition and nanowire size. We adopt a model of faceted growth to demonstrate the formation of twins during growth, which is well supported by both a transmission electron microscopy study and simulation based on nucleation energetics. Our study has led to twin-free segments in the length up to 80 nm, a significant improvement compared to previous work using SAG. The achievements may open up opportunities for future functional III-V-on-Si heterostructure devices.

Political opinion formation: Initial opinion distribution and individual heterogeneity of tolerance

NASA Astrophysics Data System (ADS)

Jin, Cheng; Li, Yifu; Jin, Xiaogang

2017-02-01

Opinion dynamics on networks have received serious attention for its profound prospects in social behaviours and self-organized systems. However, political opinion formation, as one typical and significant case, remains lacking in discussion. Previous agent-based simulations propose various models that are based on different mechanisms like the coevolution between network topology and status transition. Nonetheless, even under the same network topology and with the same simple mechanism, forming opinions can still be uncertain. In this work, we propose two features, the initial distribution of opinions and the individual heterogeneity of tolerances on opinion changing, in political opinion formation. These two features are imbedded in the network construction phase of a classical model. By comparing multi simple-party systems, along with a detailed analysis on the two-party system, we capture the critical phenomenon of fragmentation, polarization and consensus both in the persistent stable stage and in-process. We further introduce the average ratio of nearest neighbours to characterize the stage of opinion formation. The results show that the initial distribution of opinions leads to different evolution results on similar random networks. In addition, the existence of stubborn nodes plays a special role: only nodes that are extremely stubborn can cause the change of final opinion distribution while in other cases they only delay the time to reach stability. If stubborn nodes are small in number, their effects are confined within a small range. This theoretical work goes deeper on an existing model, it is an early exploration on qualitative and quantitative simulation of party competition.

When Feedback Fails: The Scaling and Saturation of Star Formation Efficiency

NASA Astrophysics Data System (ADS)

Y Grudic, Michael; Hopkins, Philip F.; Faucher-Giguere, Claude-Andre; Quataert, Eliot; Murray, Norman W.; Keres, Dusan

2017-06-01

We present a suite of 3D multi-physics MHD simulations following star formation in isolated turbulent molecular gas disks ranging from 5 to 500 parsecs in radius. These simulations are designed to survey the range of surface densities between those typical of Milky Way GMCs (˜100 M⊙pc-2) and extreme ULIRG environments (˜104M⊙pc-2) so as to map out the scaling of star formation efficiency (SFE) between these two regimes. The simulations include prescriptions for supernova, stellar wind, and radiative feedback, which we find to be essential in determining both the instantaneous (ɛff) and integrated (ɛint) star formation efficiencies. In all simulations, the gas disks form stars until a critical stellar mass has been reached and the remaining gas is blown out by stellar feedback. We find that surface density is the best predictor of ɛint of all of the gas cloud's global properties, as suggested by analytic force balance arguments from previous works. Furthermore, SFE eventually saturates to ˜1 at high surface density, with very good agreement across different spatial scales. We also find a roughly proportional relationship between ɛff and ɛint. These results have implications for star formation in galactic disks, the nature and fate of nuclear starbursts, and the formation of bound star clusters. The scaling of ɛff also contradicts star formation models in which ɛff˜1% universally, including popular subgrid models for galaxy simulations.

Fracture formation post impact on Enceladus?

NASA Astrophysics Data System (ADS)

Craft, Kathleen; Roberts, James

2017-10-01

Saturn’s small icy moon Enceladus was observed by the Cassini mission to have jets of ice and vapor emanating from its southern polar terrain (SPT), creating a plume. The fact that the activity is only observed in one region has not been well explained. Hypotheses include a regional sea beneath the SPT or a global ocean that is thicker beneath the SPT, which feeds a group of fractures observed there called the tiger stripes. As Enceladus orbits Saturn, stresses acting on the moon may open and close the fractures enabling interior volatiles to escape and form the plume. Here we investigate how these fractures could have formed and the activity begun. We propose that an impact could have either punctured through or caused substantial melt and fracturing in an ice shell connecting to a liquid layer below. Our goal is to determine whether a formation of fractures resembling the tiger stripes could emerge post-impact.Previous work by Roberts and Stickle (LPSC 2017, #1955) modeled an impact into an ice shell over an ocean and calculated penetration depth and melt temperatures and volumes through the shell thickness. Fracturing would occur during and after the impact, the crater would collapse, water would begin to refreeze and subsequent fluid exchange would occur. Working forward from a point after impact and as the ice shell begins refreezing, we performed finite element modeling to simulate the probable formation of fractures based on the resulting stress regime. Here we explore fracture formation for shells ranging from 1 km to 5 km thick (consistent with gravity and libration studies), to explore formation as the shell cools and thickens through time. We emplaced several fractures, penetrating either entirely or partially across the base to surface. Fracture interactions, tidal stress forcing with orbital true anomalies and ocean water pressurization are considered free parameters in the model. We present results for a number of parameter value combinations and quantify fracture formation sensitivities to model parameters.

Group Additivity Determination for Oxygenates, Oxonium Ions, and Oxygen-Containing Carbenium Ions

DOE Office of Scientific and Technical Information (OSTI.GOV)

Dellon, Lauren D.; Sung, Chun-Yi; Robichaud, David J.

Bio-oil produced from biomass fast pyrolysis often requires catalytic upgrading to remove oxygen and acidic species over zeolite catalysts. The elementary reactions in the mechanism for this process involve carbenium and oxonium ions. In order to develop a detailed kinetic model for the catalytic upgrading of biomass, rate constants are required for these elementary reactions. The parameters in the Arrhenius equation can be related to thermodynamic properties through structure-reactivity relationships, such as the Evans-Polanyi relationship. For this relationship, enthalpies of formation of each species are required, which can be reasonably estimated using group additivity. However, the literature previously lacked groupmore » additivity values for oxygenates, oxonium ions, and oxygen-containing carbenium ions. In this work, 71 group additivity values for these types of groups were regressed, 65 of which had not been reported previously and six of which were newly estimated based on regression in the context of the 65 new groups. Heats of formation based on atomization enthalpy calculations for a set of reference molecules and isodesmic reactions for a small set of larger species for which experimental data was available were used to demonstrate the accuracy of the Gaussian-4 quantum mechanical method in estimating enthalpies of formation for species involving the moieties of interest. Isodesmic reactions for a total of 195 species were constructed from the reference molecules to calculate enthalpies of formation that were used to regress the group additivity values. The results showed an average deviation of 1.95 kcal/mol between the values calculated from Gaussian-4 and isodesmic reactions versus those calculated from the group additivity values that were newly regressed. Importantly, the new groups enhance the database for group additivity values, especially those involving oxonium ions.« less

A formal MIM specification and tools for the common exchange of MIM diagrams: an XML-Based format, an API, and a validation method

PubMed Central

2011-01-01

Background The Molecular Interaction Map (MIM) notation offers a standard set of symbols and rules on their usage for the depiction of cellular signaling network diagrams. Such diagrams are essential for disseminating biological information in a concise manner. A lack of software tools for the notation restricts wider usage of the notation. Development of software is facilitated by a more detailed specification regarding software requirements than has previously existed for the MIM notation. Results A formal implementation of the MIM notation was developed based on a core set of previously defined glyphs. This implementation provides a detailed specification of the properties of the elements of the MIM notation. Building upon this specification, a machine-readable format is provided as a standardized mechanism for the storage and exchange of MIM diagrams. This new format is accompanied by a Java-based application programming interface to help software developers to integrate MIM support into software projects. A validation mechanism is also provided to determine whether MIM datasets are in accordance with syntax rules provided by the new specification. Conclusions The work presented here provides key foundational components to promote software development for the MIM notation. These components will speed up the development of interoperable tools supporting the MIM notation and will aid in the translation of data stored in MIM diagrams to other standardized formats. Several projects utilizing this implementation of the notation are outlined herein. The MIM specification is available as an additional file to this publication. Source code, libraries, documentation, and examples are available at http://discover.nci.nih.gov/mim. PMID:21586134

A formal MIM specification and tools for the common exchange of MIM diagrams: an XML-Based format, an API, and a validation method.

PubMed

Luna, Augustin; Karac, Evrim I; Sunshine, Margot; Chang, Lucas; Nussinov, Ruth; Aladjem, Mirit I; Kohn, Kurt W

2011-05-17

The Molecular Interaction Map (MIM) notation offers a standard set of symbols and rules on their usage for the depiction of cellular signaling network diagrams. Such diagrams are essential for disseminating biological information in a concise manner. A lack of software tools for the notation restricts wider usage of the notation. Development of software is facilitated by a more detailed specification regarding software requirements than has previously existed for the MIM notation. A formal implementation of the MIM notation was developed based on a core set of previously defined glyphs. This implementation provides a detailed specification of the properties of the elements of the MIM notation. Building upon this specification, a machine-readable format is provided as a standardized mechanism for the storage and exchange of MIM diagrams. This new format is accompanied by a Java-based application programming interface to help software developers to integrate MIM support into software projects. A validation mechanism is also provided to determine whether MIM datasets are in accordance with syntax rules provided by the new specification. The work presented here provides key foundational components to promote software development for the MIM notation. These components will speed up the development of interoperable tools supporting the MIM notation and will aid in the translation of data stored in MIM diagrams to other standardized formats. Several projects utilizing this implementation of the notation are outlined herein. The MIM specification is available as an additional file to this publication. Source code, libraries, documentation, and examples are available at http://discover.nci.nih.gov/mim.

Characterization of the potential energy landscape of an antiplasticized polymer.

PubMed

Riggleman, Robert A; Douglas, Jack F; de Pablo, Juan J

2007-07-01

The nature of the individual transitions on the potential energy landscape (PEL) associated with particle motion are directly examined for model fragile glass-forming polymer melts, and the results are compared to those of an antiplasticized polymer system. In previous work, we established that the addition of antiplasticizer reduces the fragility of glass formation so that the antiplasticized material is a stronger glass former. In the present work, we find that the antiplasticizing molecules reduce the energy barriers for relaxation compared to the pure polymer, implying that the antiplasticized system has smaller barriers to overcome in order to explore its configuration space. We examine the cooperativity of segmental motion in these bulk fluids and find that more extensive stringlike collective motion enables the system to overcome larger potential energy barriers, in qualitative agreement with both the Stillinger-Weber and Adam-Gibbs views of glass formation. Notably, the stringlike collective motion identified by our PEL analysis corresponds to incremental displacements that occur within larger-scale stringlike particle displacement processes associated with PEL metabasin transitions that mediate structural relaxation. These "substrings" nonetheless seem to exhibit changes in relative size with antiplasticization similar to those observed in "superstrings" that arise at elevated temperatures. We also study the effects of confinement on the energy barriers in each system. Film confinement makes the energy barriers substantially smaller in the pure polymer, while it has little effect on the energy barriers in the antiplasticized system. This observation is qualitatively consistent with our previous studies of stringlike motion in these fluids at higher temperatures and with recent experimental measurements by Torkelson and co-workers.

Electric Monopole Transition Strengths in the Stable Nickel Isotopes

NASA Astrophysics Data System (ADS)

Evitts, Lee John

A series of measurements of stable nickel isotopes were performed at the Australian National University in Canberra. Excited states in 58,60,62Ni were populated via inelastic scattering of proton beams delivered by the 14UD Pelletron accelerator. Multiple setups were used in order to determine the structure of low-lying states. The CAESAR array of Compton-suppressed HPGe detectors was used to measure the (E2/M1) mixing ratio of transitions from angular distributions of gamma rays. The Super-e spectrometer was used to measure conversion coefficients for a number of J to J transitions. The data obtained from both devices was combined with previously measured parent lifetimes and branching ratios to determine E0 transition strengths between J-pi transitions. The E0 transition strength for the second 0+ to first 0+ transitions in 60,62Ni have been measured for the first time through internal conversion electron detection. The experimental value of 132(+59,-70) for 62Ni agrees within 2 sigma of the previous result obtained from internal pair formation. However it is likely that the previous experimental results used an outdated theoretical model for internal pair formation emission. This work also represents the first measurements of E0 transition strengths between 2+ states in Ni isotopes. There is generally large E0 strength between the 2+ states, particularly in the second 2+ to first 2+ transition, however there is also a large uncertainty in the measurements owing to the difficulties involved in measuring conversion coefficients. In 62Ni, the E0 transition strength of 172(+62,-77) for the second 2+ to first 2+ transition gives further weight to the argument against the spherical vibrator model, as an E0 transition is forbidden if there is a change of only one phonon. The large measurement also indicates the presence of shape coexistence, complementing the recent experimental work carried out in the neutron-rich Ni isotopes.

Application of synchrotron radiation phase-contrast microtomography with iodine staining to Rhodnius prolixus head during ecdysis period

NASA Astrophysics Data System (ADS)

Sena, G.; Nogueira, L. P.; Braz, D.; Colaço, M. V.; Azambuja, P.; Gonzalez, M. S.; Tromba, G.; Mantuano, A.; Costa, F. N.; Barroso, R. C.

2018-05-01

Synchrotron radiation phase-contrast microtomography (SR-PHC-CT) has become an important tool in studies of insects, mainly Rhodinius prolixus, the insect vector of Chagas disease. A previous work has shown that SR-PHC-CT is an excellent technique in studies about the ecdysis process of R.prolixus head. The term ecdysis refers to the set of behaviors by which an insect extracts itself from an old exoskeleton. The exoskeleton formation is indispensable for the evolutionary success of insect species, so failure to complete ecdysis will, in most cases result in death, making this process an excellent target in the search for new insect pest management strategies. Understanding the behavior of the ecdysis process is fundamental for the non-proliferation of Chagas disease. Despite it has been possible to identify the moulting process in the first work, main structures of the R.prolixus head could not be identified. In this work, it was developed a staining protocol which enabled the identification of these important structures using Iodine at SYRMEP beamline of ELETTRA. In the 3D images, it was possible to segment essential structures in the process of ecdysis. These structures have never been presented previously in the moulting period with SR-PHC-CT.

Distribution of "Compound" and "Simple" Flows in the Deccan Traps (India)

NASA Astrophysics Data System (ADS)

Vanderkluysen, L.; Self, S.; Jay, A. E.; Sheth, H. C.; Clarke, A. B.

2014-12-01

The Deccan Traps are a dominantly mafic large igneous province (LIP) that, prior to erosion, covered ~1 million km2 of west-central India with lava flows. The type sections of the Western Ghats escarpment, where the Deccan lava pile reaches a maximum reconstructed stratigraphic thickness of ~3400 m, are subdivided into eleven formations defined on chemo-stratigraphic grounds. Earlier work recognized that emplacement of Deccan basalt flows primarily occurs following two main modes: as a stack of meter-sized pāhoehoe toes and lobes, termed "compound" flows; or as inflated sheet lobes tens to hundreds of meters in width and meters to tens of meters in height, previously termed "simple" flows. Initially, the distribution of small lobes and sheet lobes in the Deccan was thought to be controlled by distance from source, but later work suggested the distribution to be mainly controlled along stratigraphic, formational boundaries, with six of the lower formations being composed exclusively of compound flows, and the upper 4-5 formations being wholly built of sheet lobes. This simple stratigraphic subdivision of lava flow morphologies has also been documented in the volcanic architecture of other LIPs, e.g., the Etendeka, the Ethiopian Traps, and in the Faeroe Islands (North Atlantic LIP). Upon examination of eight sections carefully logged along the Western Ghats, this traditional view must be challenged. Where the lower Deccan formations crop out, we found that as much as 65% of the exposed thickness (below the Khandala Formation) is made up of sheet lobes, from 40% in the Bhimashankar Formation to 75% in the Thakurvadi Formation. Near the bottom of the sequence, 25% of the Neral Formation is composed of sheet lobes ≥15 m in thickness. This distribution in lava flow morphology does not seem to be noticeably affected by the inferred distance to the source (based on the location of similar-composition dikes for each formation). Several mechanisms have been proposed to explain the development of compound flows and inflated sheet lobes, involving one or more of the following factors: underlying slope, varying effusion rate, and source geometry. Analogue experiments are currently under way to test the relative influence of each of these factors in the development of different lava flow morphologies in LIPs.

Chemical abundances of the PRGs UGC 7576 and UGC 9796. I. Testing the formation scenario

NASA Astrophysics Data System (ADS)

Spavone, M.; Iodice, E.; Arnaboldi, M.; Longo, G.; Gerhard, O.

2011-07-01

Context. The study of both the chemical abundances of HII regions in polar ring galaxies and their implications for the evolutionary scenario of these systems has been a step forward both in tracing the formation history of the galaxy and giving hints toward the mechanisms at work during the building of a disk by cold accretion process. It is now important to establish whether such results are typical of the class of polar disk galaxies as a whole. Aims: The present work aims at checking the cold accretion of gas through a "cosmic filament" as a possible scenario for the formation of the polar structures in UGC 7576 and UGC 9796. If these form by cold accretion, we expect the HII regions abundances and metallicities to be lower than those of same-luminosity spiral disks, with values of Z ~ 1/10 Z⊙, as predicted by cosmological simulations. Methods: We used deep long-slit spectra, obtained with DOLORES@TNG in the optical wavelengths, of the brightest HII regions associated with the polar structures to derive their chemical abundances and star formation rate. We used the empirical methods, based on the intensities of easily observable lines, to derive the oxygen abundance 12 + log (O/H) of both galaxies. Such values are compared with those typical of different morphological galaxy types of comparable luminosity. Results: The average metallicity values for UGC 7576 and UGC 9796 are Z = 0.4 Z⊙ and Z = 0.1 Z⊙, respectively. Both values are lower than those measured for ordinary spirals of similar luminosity, and UGC 7576 presents no metallicity gradient along the polar structure. These data, together with other observed features available for the two PRGs in previous works, are compared with the predictions of simulations of tidal accretion, cold accretion, and merging to disentangle these scenarios.

A manic-depressive symptom self-report in optical scanable format.

PubMed

Glick, Henry A; McBride, Linda; Bauer, Mark S

2003-10-01

The Internal State Scale (ISS) is a self-report instrument that allows the simultaneous assessment of both manic and depressive symptoms in individuals with manic-depressive disorder. Prior work indicates that subscales are highly correlated with clinician ratings of mania and depression and provide a discriminant function that identifies individuals in manic/hypomanic, mixed, depressed, and euthymic mood states. A drawback to the ISS is that its items were developed in the visual analogue scale (VAS) format which is labor-intensive to score, particularly with repeat (e.g. daily) administration. A Likert-based format would allow quick and easy optical scanning for which scoring could be automated. To compare discriminating properties in Likert versus VAS format we re-analyzed previously collected data and collected new data: (a) VAS-based ISS scores from 86 subjects from a prior four-site study were re-analyzed by collapsing scores into 20 and then 10 Likert-based bins to assess loss of precision from collapsing scores, and (b) 24 additional subjects were administered the ISS in VAS and Likert formats to assess loss of precision due to instrument completion factors. Discriminant ability, including kappas and receiver operator characteristic curves, were unchanged across the two formats. Within-subjects reliability was uniformally high across formats. Likert-based scoring of the ISS can be used without loss of precision, thus making automated scoring of the ISS feasible. This format will be particularly useful for studies that require processing of large numbers of ISSs, such as those that collect frequent ratings over long periods of time and/or those that utilize large samples.

Evaluating tablet computers as a survey tool in rural communities.

PubMed

Newell, Steve M; Logan, Henrietta L; Guo, Yi; Marks, John G; Shepperd, James A

2015-01-01

Although tablet computers offer advantages in data collection over traditional paper-and-pencil methods, little research has examined whether the 2 formats yield similar responses, especially with underserved populations. We compared the 2 survey formats and tested whether participants' responses to common health questionnaires or perceptions of usability differed by survey format. We also tested whether we could replicate established paper-and-pencil findings via tablet computer. We recruited a sample of low-income community members living in the rural southern United States. Participants were 170 residents (black = 49%; white = 36%; other races and missing data = 15%) drawn from 2 counties meeting Florida's state statutory definition of rural with 100 persons or fewer per square mile. We randomly assigned participants to complete scales (Center for Epidemiologic Studies Depression Inventory and Regulatory Focus Questionnaire) along with survey format usability ratings via paper-and-pencil or tablet computer. All participants rated a series of previously validated posters using a tablet computer. Finally, participants completed comparisons of the survey formats and reported survey format preferences. Participants preferred using the tablet computer and showed no significant differences between formats in mean responses, scale reliabilities, or in participants' usability ratings. Overall, participants reported similar scales responses and usability ratings between formats. However, participants reported both preferring and enjoying responding via tablet computer more. Collectively, these findings are among the first data to show that tablet computers represent a suitable substitute among an underrepresented rural sample for paper-and-pencil methodology in survey research. Published 2014. This article is a U.S. Government work and is in the public domain in the USA.

The imprint of rapid star formation quenching on the spectral energy distributions of galaxies

NASA Astrophysics Data System (ADS)

Ciesla, L.; Boselli, A.; Elbaz, D.; Boissier, S.; Buat, V.; Charmandaris, V.; Schreiber, C.; Béthermin, M.; Baes, M.; Boquien, M.; De Looze, I.; Fernández-Ontiveros, J. A.; Pappalardo, C.; Spinoglio, L.; Viaene, S.

2016-01-01

In high density environments, the gas content of galaxies is stripped, leading to a rapid quenching of their star formation activity. This dramatic environmental effect, which is not related to typical passive evolution, is generally not taken into account in the star formation histories (SFHs) usually assumed to perform spectral energy distribution (SED) fitting of these galaxies, yielding a poor fit of their stellar emission and, consequently, biased estimate of the star formation rate (SFR). In this work, we aim at reproducing this rapid quenching using a truncated delayed SFH that we implemented in the SED fitting code CIGALE. We show that the ratio between the instantaneous SFR and the SFR just before the quenching (rSFR) is well constrained as long as rest-frame UV data are available. This SED modeling is applied to the Herschel Reference Survey (HRS) containing isolated galaxies and sources falling in the dense environment of the Virgo cluster. The latter are Hi-deficient because of ram pressure stripping. We show that the truncated delayed SFH successfully reproduces their SED, while typical SFH assumptions fail. A good correlation is found between rSFR and Hi-def, the parameter that quantifies the gas deficiency of cluster galaxies, meaning that SED fitting results can be used to provide a tentative estimate of the gas deficiency of galaxies for which Hi observations are not available. The HRS galaxies are placed on the SFR-M∗ diagram showing that the Hi-deficient sources lie in the quiescent region, thus confirming previous studies. Using the rSFR parameter, we derive the SFR of these sources before quenching and show that they were previously on the main sequence relation. We show that the rSFR parameter is also recovered well for deeply obscured high redshift sources, as well as in the absence of IR data. SED fitting is thus a powerful tool for identifying galaxies that underwent a rapid star formation quenching.

The effect of anisotropic heat transport on magnetic islands in 3-D configurations

NASA Astrophysics Data System (ADS)

Schlutt, M. G.; Hegna, C. C.

2012-08-01

An analytic theory of nonlinear pressure-induced magnetic island formation using a boundary layer analysis is presented. This theory extends previous work by including the effects of finite parallel heat transport and is applicable to general three dimensional magnetic configurations. In this work, particular attention is paid to the role of finite parallel heat conduction in the context of pressure-induced island physics. It is found that localized currents that require self-consistent deformation of the pressure profile, such as resistive interchange and bootstrap currents, are attenuated by finite parallel heat conduction when the magnetic islands are sufficiently small. However, these anisotropic effects do not change saturated island widths caused by Pfirsch-Schlüter current effects. Implications for finite pressure-induced island healing are discussed.

Ceramic fibers from Si-B-C polymer precursors

NASA Technical Reports Server (NTRS)

Riccitiello, S. R.; Hsu, M. S.; Chen, T. S.

1993-01-01

Non-oxide ceramics such as silicon carbide (SiC), silicon nitride (Si3N4), and silicon borides (SiB4, SiB6) have thermal stability, oxidation resistance, hardness, and varied electrical properties. All these materials can be prepared in a fiber form from a suitable polymer precursor. The above mentioned fibers, when tested over a temperature range from 25 to 1400 C, experience degradation at elevated temperatures. Past work in ceramic materials has shown that the strength of ceramics containing both carbides and borides is sustained at elevated temperatures, with minimum oxidation. The work presented here describes the formation of ceramic fibers containing both elements, boron and silicon, prepared via the polymer precursor route previously reported by the authors, and discusses the fiber mechanical properties that are retained over the temperature range studied.

Presence of Li clusters in molten LiCl-Li

DOE PAGES

Merwin, Augustus; Phillips, William C.; Williamson, Mark A.; ...

2016-05-05

Molten mixtures of lithium chloride and metallic lithium are of significant interest in various metal oxide reduction processes. These solutions have been reported to exhibit seemingly anomalous physical characteristics that lack a comprehensive explanation. ln the current work, the physical chemistry of molten solutions of lithium chloride and metallic lithium, with and without lithium oxide, was investigated using in situ Raman spectroscopy. The Raman spectra obtained from these solutions were in agreement with the previously reported spectrum of the lithium cluster, Li 8. Furthermore, this observation is indicative of a nanofluid type colloidal suspension of Li 8, in a moltenmore » salt matrix. It is suggested that the formation and suspension of lithium clusters in lithium chloride is the cause of various phenomena exhibited by these solutions that were previously unexplainable.« less

Gravity or turbulence? - III. Evidence of pure thermal Jeans fragmentation at ˜0.1 pc scale

NASA Astrophysics Data System (ADS)

Palau, Aina; Ballesteros-Paredes, Javier; Vázquez-Semadeni, Enrique; Sánchez-Monge, Álvaro; Estalella, Robert; Fall, S. Michael; Zapata, Luis A.; Camacho, Vianey; Gómez, Laura; Naranjo-Romero, Raúl; Busquet, Gemma; Fontani, Francesco

2015-11-01

We combine previously published interferometric and single-dish data of relatively nearby massive dense cores that are actively forming stars to test whether their `fragmentation level' is controlled by turbulent or thermal support. We find no clear correlation between the fragmentation level and velocity dispersion, nor between the observed number of fragments and the number of fragments expected when the gravitationally unstable mass is calculated including various prescriptions for `turbulent support'. On the other hand, the best correlation is found for the case of pure thermal Jeans fragmentation, for which we infer a core formation efficiency around 13 per cent, consistent with previous works. We conclude that the dominant factor determining the fragmentation level of star-forming massive dense cores at 0.1 pc scale seems to be thermal Jeans fragmentation.

Evaluation of a Low-Noise Formate Spiral-Bevel Gear Set

NASA Technical Reports Server (NTRS)

Lewicki, David g.; Woods, Ron L.; Litvin, Faydor L.; Fuentes, Alfonso

2007-01-01

Studies to evaluate low-noise Formate spiral-bevel gears were performed. Experimental tests were performed on the OH-58D helicopter main-rotor transmission in the NASA Glenn 500-hp Helicopter Transmission Test Stand. Low-noise Formate spiral-bevel gears were compared to the baseline OH-58D spiral-bevel gear design, a high-strength design, and previously tested low-noise designs (including an original low-noise design and an improved-bearing-contact low-noise design). Noise, vibration, and tooth strain tests were performed. The Formate design showed a decrease in noise and vibration compared to the baseline OH-58D design, and was similar to that of the previously tested improved-bearing contact low-noise design. The pinion tooth stresses for the Formate design significantly decreased in comparison to the baseline OH-58D design. Also similar to that of the improved bearing-contact low-noise design, the maximum stresses of the Formate design shifted toward the heel, compared to the center of the face width for the baseline, high-strength, and previously tested low-noise designs.

Stars Take Longer to Form, Need a 'Kick' to Get Started, Astronomers Say

NASA Astrophysics Data System (ADS)

2002-01-01

Star formation is a longer process than previously thought, and is heavily dependent on outside events, such as supernova explosions, to trigger it, a team of astronomers has concluded. The scientists reached their conclusions after making a detailed study of a number of the dark gas clouds in which new stars are formed. Optical and mm-wave overlay of dark cloud Optical image of the dark cloud L57, with white contours indicating submillimeter-wave emission from dust within the dark cloud. "Our observations indicate that we need to drastically revise our ideas about the very early stages of star formation," said Claire Chandler, an astronomer at the National Radio Astronomy Observatory (NRAO) in Socorro, New Mexico. Chandler, who worked with John Richer and Anja Visser at the Mullard Radio Astronomy Observatory in the United Kingdom, presented the results at the American Astronomical Society's meeting in Washington, D.C. The astronomers observed the gas clouds with the SCUBA camera on the James Clerk Maxwell Telescope on Mauna Kea, Hawaii. This instrument is sensitive to submillimeter-wavelength radiation, which lies between radio waves and infrared waves in the electromagnetic spectrum. They studied clouds that previously had been observed with optical and infrared telescopes. The SCUBA images allowed them to see aspects of the clouds not visible at other wavelengths. Some young "protostars" are so deeply embedded in their parent gas clouds that they are invisible to infrared telescopes, while others have become visible by consuming and blowing away much of their surrounding clouds. Earlier studies had indicated that the "invisible" stars are only about one-tenth as common as those visible to infrared telescopes. "What we see in our study, however, is equal numbers of both types," said Chandler, who added, "This means that both stages probably have about the same lifetime -- roughly 200,000 years each." Another conclusion coming from the study is that star formation is heavily dependent on a triggering event to get it started. Such a triggering event might be the shock wave from a supernova explosion that causes gas clouds to begin the gravitational collapse that ultimately results in a new star. Another challenge to traditional wisdom about the early stages of star formation came in the team's analysis of data on starless cores -- gas clouds that have not yet begun their collapse into stars. The astronomers found that the starless cores in their study are on the verge of collapsing, and probably have shorter lifetimes than previously thought. "This means that, contrary to what we thought before, you don't need strong magnetic fields to hold these things up against gravitational collapse, because they don't last that long," Chandler said. Much theoretical work on early star formation that focuses on the role of magnetic fields may need revision, the study indicates. The National Radio Astronomy Observatory is a facility of the National Science Foundation, operated under cooperative agreement by Associated Universities, Inc.

Selective labelling and eradication of antibiotic-tolerant bacterial populations in Pseudomonas aeruginosa biofilms

PubMed Central

Chua, Song Lin; Yam, Joey Kuok Hoong; Hao, Piliang; Adav, Sunil S.; Salido, May Margarette; Liu, Yang; Givskov, Michael; Sze, Siu Kwan; Tolker-Nielsen, Tim; Yang, Liang

2016-01-01

Drug resistance and tolerance greatly diminish the therapeutic potential of antibiotics against pathogens. Antibiotic tolerance by bacterial biofilms often leads to persistent infections, but its mechanisms are unclear. Here we use a proteomics approach, pulsed stable isotope labelling with amino acids (pulsed-SILAC), to quantify newly expressed proteins in colistin-tolerant subpopulations of Pseudomonas aeruginosa biofilms (colistin is a ‘last-resort' antibiotic against multidrug-resistant Gram-negative pathogens). Migration is essential for the formation of colistin-tolerant biofilm subpopulations, with colistin-tolerant cells using type IV pili to migrate onto the top of the colistin-killed biofilm. The colistin-tolerant cells employ quorum sensing (QS) to initiate the formation of new colistin-tolerant subpopulations, highlighting multicellular behaviour in antibiotic tolerance development. The macrolide erythromycin, which has been previously shown to inhibit the motility and QS of P. aeruginosa, boosts biofilm eradication by colistin. Our work provides insights on the mechanisms underlying the formation of antibiotic-tolerant populations in bacterial biofilms and indicates research avenues for designing more efficient treatments against biofilm-associated infections. PMID:26892159

Embryo sac formation and early embryo development in Agave tequilana (Asparagaceae).

PubMed

González-Gutiérrez, Alejandra G; Gutiérrez-Mora, Antonia; Rodríguez-Garay, Benjamín

2014-01-01

Agave tequilana is an angiosperm species that belongs to the family Asparagaceae (formerly Agavaceae). Even though there is information regarding to some aspects related to the megagametogenesis of A. tequilana, this is the first report describing the complete process of megasporogenesis, megagametogenesis, the early embryo and endosperm development process in detail. The objective of this work was to study and characterize all the above processes and the distinctive morphological changes of the micropylar and chalazal extremes after fertilization in this species. The agave plant material for the present study was collected from commercial plantations in the state of Jalisco, Mexico. Ovules and immature seeds, previously fixed in FAA and kept in ethanol 70%, were stained based on a tissue clarification technique by using a Mayer's-Hematoxylin solution. The tissue clarification technique was successfully used for the characterization of the megasporogenesis, megagametogenesis, mature embryo sac formation, the early embryo and endosperm development processes by studying intact cells. The embryo sac of A. tequilana was confirmed to be of the monosporic Polygonum-type and an helobial endosperm formation. Also, the time-lapse of the developmental processes studied was recorded.

An improved ice cloud formation parameterization in the EMAC model

NASA Astrophysics Data System (ADS)

Bacer, Sara; Pozzer, Andrea; Karydis, Vlassis; Tsimpidi, Alexandra; Tost, Holger; Sullivan, Sylvia; Nenes, Athanasios; Barahona, Donifan; Lelieveld, Jos

2017-04-01

Cirrus clouds cover about 30% of the Earth's surface and are an important modulator of the radiative energy budget of the atmosphere. Despite their importance in the global climate system, there are still large uncertainties in understanding the microphysical properties and interactions with aerosols. Ice crystal formation is quite complex and a variety of mechanisms exists for ice nucleation, depending on aerosol characteristics and environmental conditions. Ice crystals can be formed via homogeneous nucleation or heterogeneous nucleation of ice-nucleating particles in different ways (contact, immersion, condensation, deposition). We have implemented the computationally efficient cirrus cloud formation parameterization by Barahona and Nenes (2009) into the EMAC (ECHAM5/MESSy Atmospheric Chemistry) model in order to improve the representation of ice clouds and aerosol-cloud interactions. The parameterization computes the ice crystal number concentration from precursor aerosols and ice-nucleating particles accounting for the competition between homogeneous and heterogeneous nucleation and among different freezing modes. Our work shows the differences and the improvements obtained after the implementation with respect to the previous version of EMAC.

Activation of Hedgehog signaling by loss of GNAS causes heterotopic ossification

PubMed Central

Regard, Jean B.; Malhotra, Deepti; Gvozdenovic-Jeremic, Jelena; Josey, Michelle; Chen, Min; Weinstein, Lee S.; Lu, Jianming; Shore, Eileen M.; Kaplan, Frederick S.; Yang, Yingzi

2014-01-01

Bone formation is exquisitely controlled in space and time. Heterotopic ossification (HO), the pathologic formation of extra-skeletal bone, occurs as a common complication of trauma or in genetic disorders and can be disabling and lethal. However, the underlying molecular mechanisms are largely unknown. Here we demonstrate that Gαs restricts bone formation to the skeleton by inhibiting Hedgehog (Hh) signaling in mesenchymal progenitor cells. In progressive osseous heteroplasia (POH), a human disease caused by null mutations in GNAS that encodes Gαs, HH signaling is upregulated in ectopic osteoblasts and progenitor cells. Ectopic Hh signaling is sufficient to induce HO, while Hh signaling inhibition blocks HO in animal models. As our previous work has shown that GNAS gain of function mutations upregulate WNT/β-Catenin signaling in fibrous dysplasia (FD), our findings identify Gαs as a critical regulator of osteoblast differentiation by maintaining a balance between two key signaling pathways: Wnt/β-catenin and Hh. HH signaling inhibitors developed for cancer therapy may be repurposed to treat HO and other diseases caused by GNAS inactivation. PMID:24076664

Selective labelling and eradication of antibiotic-tolerant bacterial populations in Pseudomonas aeruginosa biofilms.

PubMed

Chua, Song Lin; Yam, Joey Kuok Hoong; Hao, Piliang; Adav, Sunil S; Salido, May Margarette; Liu, Yang; Givskov, Michael; Sze, Siu Kwan; Tolker-Nielsen, Tim; Yang, Liang

2016-02-19

Drug resistance and tolerance greatly diminish the therapeutic potential of antibiotics against pathogens. Antibiotic tolerance by bacterial biofilms often leads to persistent infections, but its mechanisms are unclear. Here we use a proteomics approach, pulsed stable isotope labelling with amino acids (pulsed-SILAC), to quantify newly expressed proteins in colistin-tolerant subpopulations of Pseudomonas aeruginosa biofilms (colistin is a 'last-resort' antibiotic against multidrug-resistant Gram-negative pathogens). Migration is essential for the formation of colistin-tolerant biofilm subpopulations, with colistin-tolerant cells using type IV pili to migrate onto the top of the colistin-killed biofilm. The colistin-tolerant cells employ quorum sensing (QS) to initiate the formation of new colistin-tolerant subpopulations, highlighting multicellular behaviour in antibiotic tolerance development. The macrolide erythromycin, which has been previously shown to inhibit the motility and QS of P. aeruginosa, boosts biofilm eradication by colistin. Our work provides insights on the mechanisms underlying the formation of antibiotic-tolerant populations in bacterial biofilms and indicates research avenues for designing more efficient treatments against biofilm-associated infections.

Experimental investigation of homogeneous charge compression ignition combustion of biodiesel fuel with external mixture formation in a CI engine.

PubMed

Ganesh, D; Nagarajan, G; Ganesan, S

2014-01-01

In parallel to the interest in renewable fuels, there has also been increased interest in homogeneous charge compression ignition (HCCI) combustion. HCCI engines are being actively developed because they have the potential to be highly efficient and to produce low emissions. Even though HCCI has been researched extensively, few challenges still exist. These include controlling the combustion at higher loads and the formation of a homogeneous mixture. To obtain better homogeneity, in the present investigation external mixture formation method was adopted, in which the fuel vaporiser was used to achieve excellent HCCI combustion in a single cylinder air-cooled direct injection diesel engine. In continuation of our previous works, in the current study a vaporised jatropha methyl ester (JME) was mixed with air to form a homogeneous mixture and inducted into the cylinder during the intake stroke to analyze the combustion, emission and performance characteristics. To control the early ignition of JME vapor-air mixture, cooled (30 °C) Exhaust gas recirculation (EGR) technique was adopted. The experimental result shows 81% reduction in NOx and 72% reduction in smoke emission.

The Influence of Individual Driver Characteristics on Congestion Formation

NASA Astrophysics Data System (ADS)

Wang, Lanjun; Zhang, Hao; Meng, Huadong; Wang, Xiqin

Previous works have pointed out that one of the reasons for the formation of traffic congestion is instability in traffic flow. In this study, we investigate theoretically how the characteristics of individual drivers influence the instability of traffic flow. The discussions are based on the optimal velocity model, which has three parameters related to individual driver characteristics. We specify the mappings between the model parameters and driver characteristics in this study. With linear stability analysis, we obtain a condition for when instability occurs and a constraint about how the model parameters influence the unstable traffic flow. Meanwhile, we also determine how the region of unstable flow densities depends on these parameters. Additionally, the Langevin approach theoretically validates that under the constraint, the macroscopic characteristics of the unstable traffic flow becomes a mixture of free flows and congestions. All of these results imply that both overly aggressive and overly conservative drivers are capable of triggering traffic congestion.

Silicification of trace fossils in carbonates; evidence from Permian Kaibab Formation, southwestern Utah

DOE Office of Scientific and Technical Information (OSTI.GOV)

Whidden, K.J.; Bottjer, D.J.

Silicification in carbonates, particularly silicified trace fossils, has received relatively little previous study. Chert comprises a significant percentage of the upper Fossil Mountain Member of the Kaibab Formation, a Permian epicontinental limestone. Distribution and origin of this chert were studied from outcrops in southwestern Utah. The origin of much of this chert is believed to be as silicified Thalassinoides burrows. Field evidence for trace fossil silicification includes (1) silicified cylindrical tubes with Y-shaped branching patterns as well as hollow tubes, and (2) polygonal box-work patterns of tubes. In addition, brachiopods, bryozoans, and abundant specimens of the sponge Actinocelia maendrina Finksmore » are also silicified. Recognition of silicified trace fossils in carbonates provides a different approach to the study of early diagenetic silica precipitation. These silicified trace fossils also represent new information on bioturbation in ancient carbonates, a subject that has, until recently, been relatively unstudied.« less

An Investigation of the Cryogenic Freezing of Water in Non-Metallic Pipelines

NASA Astrophysics Data System (ADS)

Martin, C. I.; Richardson, R. N.; Bowen, R. J.

2004-06-01

Pipe freezing is increasingly used in a range of industries to solve otherwise intractable pipe line maintenance and servicing problems. This paper presents the interim results from an experimental study on deliberate freezing of polymeric pipelines. Previous and contemporary works are reviewed. The object of the current research is to confirm the feasibility of ice plug formation within a polymeric pipe as a method of isolation. Tests have been conducted on a range of polymeric pipes of various sizes. The results reported here all relate to freezing of horizontal pipelines. In each case the process of plug formation was photographed, the frozen plug pressure tested and the pipe inspected for signs of damage resulting from the freeze procedure. The time to freeze was recorded and various temperatures logged. These tests have demonstrated that despite the poor thermal and mechanical properties of the polymers, freezing offers a viable alternative method of isolation in polymeric pipelines.

Volcanic Structures Within Niger and Dao Valles, Mars, and Implications for Outflow Channel Evolution and Hellas Basin Rim Development

NASA Astrophysics Data System (ADS)

Korteniemi, J.; Kukkonen, S.

2018-04-01

Outflow channel formation on the eastern Hellas rim region is traditionally thought to have been triggered by activity phases of the nearby volcanoes Hadriacus and Tyrrhenus Montes: As a result of volcanic heating subsurface volatiles were mobilized. It is, however, under debate, whether eastern Hellas volcanism was in fact more extensive, and if there were volcanic centers separate from the identified central volcanoes. This work describes previously unrecognized structures in the Niger-Dao Valles outflow channel complex. We interpret them as volcanic edifices: cones, a shield, and a caldera. The structures provide evidence of an additional volcanic center within the valles and indicate volcanic activity both prior to and following the formation of the outflow events. They expand the extent, type, and duration of volcanic activity in the Circum-Hellas Volcanic Province and provide new information on interaction between volcanism and fluvial activity.

Comparison of precursor infiltration into polymer thin films via atomic layer deposition and sequential vapor infiltration using in-situ quartz crystal microgravimetry

DOE Office of Scientific and Technical Information (OSTI.GOV)

Padbury, Richard P.; Jur, Jesse S., E-mail: jsjur@ncsu.edu

Previous research exploring inorganic materials nucleation behavior on polymers via atomic layer deposition indicates the formation of hybrid organic–inorganic materials that form within the subsurface of the polymer. This has inspired adaptations to the process, such as sequential vapor infiltration, which enhances the diffusion of organometallic precursors into the subsurface of the polymer to promote the formation of a hybrid organic–inorganic coating. This work highlights the fundamental difference in mass uptake behavior between atomic layer deposition and sequential vapor infiltration using in-situ methods. In particular, in-situ quartz crystal microgravimetry is used to compare the mass uptake behavior of trimethyl aluminummore » in poly(butylene terephthalate) and polyamide-6 polymer thin films. The importance of trimethyl aluminum diffusion into the polymer subsurface and the subsequent chemical reactions with polymer functional groups are discussed.« less

Spectroscopic Observation of a Hydrogenated CO Dimer Intermediate During CO Reduction on Cu(100) Electrodes.

PubMed

Pérez-Gallent, Elena; Figueiredo, Marta C; Calle-Vallejo, Federico; Koper, Marc T M

2017-03-20

Carbon dioxide and carbon monoxide can be electrochemically reduced to useful products such as ethylene and ethanol on copper electrocatalysts. The process is yet to be optimized and the exact mechanism and the corresponding reaction intermediates are under debate or unknown. In particular, it has been hypothesized that the C-C bond formation proceeds via CO dimerization and further hydrogenation. Although computational support for this hypothesis exists, direct experimental evidence has been elusive. In this work, we detect a hydrogenated dimer intermediate (OCCOH) using Fourier transform infrared spectroscopy at low overpotentials in LiOH solutions. Density functional theory calculations support our assignment of the observed vibrational bands. The formation of this intermediate is structure sensitive, as it is observed only during CO reduction on Cu(100) and not on Cu(111), in agreement with previous experimental and computational observations. © 2017 Wiley-VCH Verlag GmbH & Co. KGaA, Weinheim.

Driven phase space vortices in plasmas with nonextensive velocity distribution

NASA Astrophysics Data System (ADS)

Trivedi, Pallavi; Ganesh, Rajaraman

2017-03-01

The evolution of chirp-driven electrostatic waves in unmagnetized plasmas is numerically investigated by using a one-dimensional (1D) Vlasov-poisson solver with periodic boundary conditions. The initial velocity distribution of the 1D plasma is assumed to be governed by nonextensive q distribution [C. Tsallis, J. Stat. Phys. 52, 479 (1988)]. For an infinitesimal amplitude of an external drive, we investigate the effects of chirp driven dynamics that leads to the formation of giant phase space vortices (PSV) for both Maxwellian (q = 1) and non-Maxwellian ( q ≠ 1 ) plasmas. For non-Maxwellian plasmas, the formation of giant PSV with multiple extrema and phase velocities is shown to be dependent on the strength of "q". Novel features such as "shark"-like and transient "honeycomb"-like structures in phase space are discussed. Wherever relevant, we compare our results with previous work.

Composites in small and simple devices to increase mixing on detector surfaces

NASA Astrophysics Data System (ADS)

Hernandez, L. F.; Lima, R. R.; Leite, A. R.; Fachini, E. R.; Silva, M. L. P.

2013-03-01

This work aims at three different applications for the betterment of plasma generated-composite thin films: pre-mixing, spray formation in miniaturized structures and an increase in the performance of detector surfaces. Miniaturized structures were projected, simulated with FEMLAB® 3.2 software and then constructed. Clustered films made from tetraethoxysilane (TEOS) and nonafluoro(iso)butyl ether (HFE®) precursors were deposited on silicon, acrylic and quartz substrates for different kinds of film characterization/or in the projected structures. Physical and chemical characterization guided the selection of best films previous to/after UVC exposure. The active surfaces (plasma-deposited films) in structures were modified by UVC exposure and then tested. The applications include pre-mixing of liquids and/or spray formation, best results being obtained with surface covered by derivative-HFE films, which acted as passivation layers. Preliminary results show good humidity sensing for TEOS-derivative films.

Theoretical Insights into a CO Dimerization Mechanism in CO2 Electroreduction.

PubMed

Montoya, Joseph H; Shi, Chuan; Chan, Karen; Nørskov, Jens K

2015-06-04

In this work, we present DFT simulations that demonstrate the ability of Cu to catalyze CO dimerization in CO2 and CO electroreduction. We describe a previously unreported CO dimer configuration that is uniquely stabilized by a charged water layer on both Cu(111) and Cu(100). Without this charged water layer at the metal surface, the formation of the CO dimer is prohibitively endergonic. Our calculations also demonstrate that dimerization should have a lower activation barrier on Cu(100) than Cu(111), which, along with a more exergonic adsorption energy and a corresponding higher coverage of *CO, is consistent with experimental observations that Cu(100) has a high activity for C-C coupling at low overpotentials. We also demonstrate that this effect is present with cations other than H(+), a finding that is consistent with the experimentally observed pH independence of C2 formation on Cu.

Stress Analysis for the Formation of En Echelon Veins and Vortex Structures: a Lesson Plan with a Brief Illumination

NASA Astrophysics Data System (ADS)

Zeng, Z.; Birnbaum, S.

2006-12-01

An English lesson plan exploring stress analysis of En Echelon veins and vortex structures used in the bilingual course in Structural Geology at the National Science Training Base of China is described. Two mechanical models are introduced in class and both mathematical and mechanical analyses are conducted. Samples, pictures and case studies are selected from Britain, Switzerland, and China. These case studies are augmented from the previous research results of the first author. Students are guided through the entire thought process, including methods and procedures used in the stress analysis of geologic structures. The teaching procedures are also illustrated. The method showed is effective to help students to get the initial knowledge of quantitative analysis for the formation of geological structures. This work is supported by the Ministry of Education of China, the Education Bureau of Hubei Province of China and China University of Geosciences (Wuhan).

A new version of Visual tool for estimating the fractal dimension of images

NASA Astrophysics Data System (ADS)

Grossu, I. V.; Felea, D.; Besliu, C.; Jipa, Al.; Bordeianu, C. C.; Stan, E.; Esanu, T.

2010-04-01

This work presents a new version of a Visual Basic 6.0 application for estimating the fractal dimension of images (Grossu et al., 2009 [1]). The earlier version was limited to bi-dimensional sets of points, stored in bitmap files. The application was extended for working also with comma separated values files and three-dimensional images. New version program summaryProgram title: Fractal Analysis v02 Catalogue identifier: AEEG_v2_0 Program summary URL:http://cpc.cs.qub.ac.uk/summaries/AEEG_v2_0.html Program obtainable from: CPC Program Library, Queen's University, Belfast, N. Ireland Licensing provisions: Standard CPC licence, http://cpc.cs.qub.ac.uk/licence/licence.html No. of lines in distributed program, including test data, etc.: 9999 No. of bytes in distributed program, including test data, etc.: 4 366 783 Distribution format: tar.gz Programming language: MS Visual Basic 6.0 Computer: PC Operating system: MS Windows 98 or later RAM: 30 M Classification: 14 Catalogue identifier of previous version: AEEG_v1_0 Journal reference of previous version: Comput. Phys. Comm. 180 (2009) 1999 Does the new version supersede the previous version?: Yes Nature of problem: Estimating the fractal dimension of 2D and 3D images. Solution method: Optimized implementation of the box-counting algorithm. Reasons for new version:The previous version was limited to bitmap image files. The new application was extended in order to work with objects stored in comma separated values (csv) files. The main advantages are: Easier integration with other applications (csv is a widely used, simple text file format); Less resources consumed and improved performance (only the information of interest, the "black points", are stored); Higher resolution (the points coordinates are loaded into Visual Basic double variables [2]); Possibility of storing three-dimensional objects (e.g. the 3D Sierpinski gasket). In this version the optimized box-counting algorithm [1] was extended to the three-dimensional case. Summary of revisions:The application interface was changed from SDI (single document interface) to MDI (multi-document interface). One form was added in order to provide a graphical user interface for the new functionalities (fractal analysis of 2D and 3D images stored in csv files). Additional comments: User friendly graphical interface; Easy deployment mechanism. Running time: In the first approximation, the algorithm is linear. References:[1] I.V. Grossu, C. Besliu, M.V. Rusu, Al. Jipa, C.C. Bordeianu, D. Felea, Comput. Phys. Comm. 180 (2009) 1999-2001.[2] F. Balena, Programming Microsoft Visual Basic 6.0, Microsoft Press, US, 1999.

An Example-Based Brain MRI Simulation Framework.

PubMed

He, Qing; Roy, Snehashis; Jog, Amod; Pham, Dzung L

2015-02-21

The simulation of magnetic resonance (MR) images plays an important role in the validation of image analysis algorithms such as image segmentation, due to lack of sufficient ground truth in real MR images. Previous work on MRI simulation has focused on explicitly modeling the MR image formation process. However, because of the overwhelming complexity of MR acquisition these simulations must involve simplifications and approximations that can result in visually unrealistic simulated images. In this work, we describe an example-based simulation framework, which uses an "atlas" consisting of an MR image and its anatomical models derived from the hard segmentation. The relationships between the MR image intensities and its anatomical models are learned using a patch-based regression that implicitly models the physics of the MR image formation. Given the anatomical models of a new brain, a new MR image can be simulated using the learned regression. This approach has been extended to also simulate intensity inhomogeneity artifacts based on the statistical model of training data. Results show that the example based MRI simulation method is capable of simulating different image contrasts and is robust to different choices of atlas. The simulated images resemble real MR images more than simulations produced by a physics-based model.

Forming Circumbinary Planets: N-body Simulations of Kepler-34

NASA Astrophysics Data System (ADS)

Lines, S.; Leinhardt, Z. M.; Paardekooper, S.; Baruteau, C.; Thebault, P.

2014-02-01

Observations of circumbinary planets orbiting very close to the central stars have shown that planet formation may occur in a very hostile environment, where the gravitational pull from the binary should be very strong on the primordial protoplanetary disk. Elevated impact velocities and orbit crossings from eccentricity oscillations are the primary contributors to high energy, potentially destructive collisions that inhibit the growth of aspiring planets. In this work, we conduct high-resolution, inter-particle gravity enabled N-body simulations to investigate the feasibility of planetesimal growth in the Kepler-34 system. We improve upon previous work by including planetesimal disk self-gravity and an extensive collision model to accurately handle inter-planetesimal interactions. We find that super-catastrophic erosion events are the dominant mechanism up to and including the orbital radius of Kepler-34(AB)b, making in situ growth unlikely. It is more plausible that Kepler-34(AB)b migrated from a region beyond 1.5 AU. Based on the conclusions that we have made for Kepler-34, it seems likely that all of the currently known circumbinary planets have also migrated significantly from their formation location with the possible exception of Kepler-47(AB)c.

Rapid disappearance of a warm, dusty circumstellar disk.

PubMed

Melis, Carl; Zuckerman, B; Rhee, Joseph H; Song, Inseok; Murphy, Simon J; Bessell, Michael S

2012-07-04

Stars form with gaseous and dusty circumstellar envelopes, which rapidly settle into disks that eventually give rise to planetary systems. Understanding the process by which these disks evolve is paramount in developing an accurate theory of planet formation that can account for the variety of planetary systems discovered so far. The formation of Earth-like planets through collisional accumulation of rocky objects within a disk has mainly been explored in theoretical and computational work in which post-collision ejecta evolution typically is ignored, although recent work has considered the fate of such material. Here we report observations of a young, Sun-like star (TYC 8241 2652 1) where infrared flux from post-collisional ejecta has decreased drastically, by a factor of about 30, over a period of less than two years. The star seems to have gone from hosting substantial quantities of dusty ejecta, in a region analogous to where the rocky planets orbit in the Solar System, to retaining at most a meagre amount of cooler dust. Such a phase of rapid ejecta evolution has not been previously predicted or observed, and no currently available physical model satisfactorily explains the observations.

DOE Office of Scientific and Technical Information (OSTI.GOV)

Lui, E.; Moya, Monica L.

This study seeks to validate the reproducibility of previous bioprinting work at Lawrence Livermore National Laboratory (LLNL) on a new Aerotech motion controller system and to modify an existing bioink, fibrin, by adding varying percent volumes of hyaluronic acid (HA). Endothelial and fibroblast cells bioprinted in fibrin gels using the Aerotech system were confirmed to be more than 77 percent viable after one day, and all bioprinted samples retained sterility after one week of culture. To characterize cell behavior in fibrin with HA addition, static co-­culture gels with varying percent volumes of HA were cultured in vitro for one week.more » Resulting confocal microscope images showed increased cell network formation in all concentrations of HA compared to the control (no HA), and rheological tests mimicking static gel compositions displayed positive correlations between gelation time, gel stiffness (G’), and hyaluronic acid concentration. Although the current data is insufficient to quantitatively associate HA concentration with the level of cell vascularization, future work will aim to develop a targeted HA concentration in fibrin for maximum cell network formation, to optimize the printing process parameters for this new bioink composition, and to analyze cell viability in bioprinted fibrin-­HA structures.« less

Abiotic formation of RNA-like oligomers by montmorillonite catalysis: part II

NASA Astrophysics Data System (ADS)

Ertem, Gözen; Snellinger-O'Brien, Ann M.; Ertem, M. C.; Rogoff, D. A.; Dworkin, Jason P.; Johnston, Murray V.; Hazen, Robert M.

2008-01-01

This work is an extension of our previous studies carried out to investigate the possible catalytic role of minerals in the abiotic synthesis of biologically important molecules. In the presence of montmorillonite, a member of the phyllosilicate group minerals that are abundant on Earth and identified on Mars, activated RNA monomers, namely 5‧-phosphorimidazolides of nucleosides (ImpNs), undergo condensation reactions in aqueous electrolyte solution producing oligomers with similar structures to short RNA fragments. Analysis of the linear trimer isomers formed in the reaction of a mixture of activated adenosine and cytidine monomers (ImpA and ImpC, respectively) employing high-performance liquid chromatography, selective enzymatic hydrolysis and matrix-assisted laser desorption/ionization mass spectroscopy molecular weight measurements demonstrate that montmorillonite catalysis facilitates the formation of hetero-isomers containing 56% A- and 44% C-monomer incorporated in their structure. The results also show that 56% of the monomer units are linked together by RNA-like 3‧, 5‧-phosphodiester bonds. These results follow the same trend observed in our most recent work studying the reaction of activated adenosine and uridine monomers, and support Bernal's hypothesis proposing the possible catalytic role of minerals in the abiotic processes in the course of chemical evolution.

Defect quasi Fermi level control-based CN reduction in GaN: Evidence for the role of minority carriers

NASA Astrophysics Data System (ADS)

Reddy, Pramod; Kaess, Felix; Tweedie, James; Kirste, Ronny; Mita, Seiji; Collazo, Ramon; Sitar, Zlatko

2017-10-01

Compensating point defect reduction in wide bandgap semiconductors is possible by above bandgap illumination based defect quasi Fermi level (dQFL) control. The point defect control technique employs excess minority carriers that influence the dQFL of the compensator, increase the corresponding defect formation energy, and consequently are responsible for point defect reduction. Previous studies on various defects in GaN and AlGaN have shown good agreement with the theoretical model, but no direct evidence for the role of minority carriers was provided. In this work, we provide direct evidence for the role of minority carriers in reducing point defects by studying the predicted increase in work done against defect (CN-1) formation with the decrease in the Fermi level (free carrier concentration) in Si doped GaN at a constant illumination intensity. Comparative defect photoluminescence measurements on illuminated and dark regions of GaN show an excellent quantitative agreement with the theory by exhibiting a greater reduction in yellow luminescence attributed to CN-1 at lower doping, thereby providing conclusive evidence for the role of the minority carriers in Fermi level control-based point defect reduction.

Star formation quenching in green valley galaxies at 0.5 ≲ z ≲ 1.0 and constraints with galaxy morphologies

NASA Astrophysics Data System (ADS)

Nogueira-Cavalcante, J. P.; Gonçalves, T. S.; Menéndez-Delmestre, K.; Sheth, K.

2018-01-01

We calculate the star formation quenching time-scales in green valley galaxies at intermediate redshifts (z ∼ 0.5-1) using stacked zCOSMOS spectra of different galaxy morphological types: spheroidal, disc-like, irregular and merger, dividing disc-like galaxies further into unbarred, weakly barred and strongly barred, assuming a simple exponentially decaying star formation history model and based on the H δ absorption feature and the 4000 Å break. We find that different morphological types present different star formation quenching time-scales, reinforcing the idea that the galaxy morphology is strongly correlated with the physical processes responsible for quenching star formation. Our quantification of the star formation quenching time-scale indicates that discs have typical time-scales 60 per cent to five times longer than that of galaxies presenting spheroidal, irregular or merger morphologies. Barred galaxies, in particular, present the slowest transition time-scales through the green valley. This suggests that although secular evolution may ultimately lead to gas exhaustion in the host galaxy via bar-induced gas inflows that trigger star formation activity, secular agents are not major contributors in the rapid quenching of galaxies at these redshifts. Galaxy interaction, associated with the elliptical, irregular and merger morphologies, contributes, to a more significant degree, to the fast transition through the green valley at these redshifts. In light of previous works suggesting that both secular and merger processes are responsible for the star formation quenching at low redshifts, our results provide an explanation to the recent findings that star formation quenching happened at a faster pace at z ∼ 0.8.

DOE Office of Scientific and Technical Information (OSTI.GOV)

Nashold, B.; Rosenblatt, D.; Hau, J.

This summary describes a Supplemental Site Inspection (SSI) conducted by Argonne National Laboratory (ANL) at Air Force Plant 59 (AFP 59) in Johnson City, New York. All required data pertaining to this project were entered by ANL into the Air Force-wide Installation Restoration Program Information System (IRPIMS) computer format and submitted to an appropriate authority. The work was sponsored by the United States Air Force as part of its Installation Restoration Program (IRP). Previous studies had revealed the presence of contaminants at the site and identified several potential contaminant sources. Argonne`s study was conducted to answer questions raised by earliermore » investigations.« less

Novel decomposition products of chlorophyll- a in continental shelf (Louisiana shelf) sediments: formation and transformation of carotenol chlorin esters

NASA Astrophysics Data System (ADS)

Chen, Nianhong; Bianchi, Thomas S.; Bland, John M.

2003-06-01

In April 2000, we collected box cores from five stations along a cross-shelf transect on the Louisiana (LA) continental shelf. Novel esters of carotenols and chlorins (carotenoid chlorin esters, CCEs), which are highly specific grazing markers, were identified in surface and deep sediments (>10 cm) from the LA shelf. Chlorophyll- a inventory indicated that CCEs are one of the major decay products of chlorophyll- a in shelf sediments. Abundances of total CCEs (9-18%) in surface sediments along the cross-shelf transect were comparable to the abundance of pheophytin- a, pyropheophytin- a, and total steryl chlorin esters (SCEs). Prior work has identified four CCEs which have dehydrated fucoxanthin/fucoxanthinol as a substitute alcohol of phytol. We report on four newly identified CCEs associated with nondehydrated fuxocanthin/fucoxanthinol esterified to (pyro)pheophorbide- a. These nondehydrated CCEs were generally present in lower concentrations than their dehydrated counterparts, but were detectable by atmospheric pressure chemical ionization (APCI) mass spectrometry coupled with high-performance liquid chromatography (HPLC). We attributed differences between this study and previous work to the time allowed for predepositional decay and grazing processes to occur. The rapid sedimentation of CCEs in the shallow water column (ca. 10 m) on the LA shelf allowed for effective burial of all CCEs compared to the deeper water column regions sampled by previous work. This speculation is supported by the fact that the concentrations of CCEs with nondehydrated fucoxanthin/fucoxanthinol were extremely low in sediments from the site on the outer LA shelf with a deeper (253 m) water column. We also tentatively identified an additional CCE and its isomer as fucoxanthinol didehydrate pyropheophorbide- a ester. We suggest that the formation and transformation of CCEs are primarily controlled by the following three biologically mediated reactions: demethoxycarbonylation, dehydration, and deacetylation. Our laboratory copepod grazing experiment also confirmed that CCEs can be excellent class-specific biomarkers of zooplankton grazing on phytoplankton.

SHOC1 is a ERCC4-(HhH)2-like protein, integral to the formation of crossover recombination intermediates during mammalian meiosis

PubMed Central

Almeida, Luciana P.; Parikh, Aniruddha; de Castro, Rodrigo O.

2018-01-01

Chromosome segregation errors during meiosis result in the formation of aneuploid gametes and are the leading cause of pregnancy loss and birth defects in humans. Proper chromosome segregation requires pairwise associations of maternal and paternal homologous chromosomes. Chiasmata, which are the cytological manifestations of crossovers (COs), provide a physical link that holds the homologs together as a pair, facilitating their orientation on the spindle at meiosis I. Although CO-promoting activities ensure a balanced number and position of COs, their identity and mechanism of action in mammals remain understudied. Previous work in yeast and Arabidopsis has shown that Zip2 and Shoc1 are ortholog proteins with an important role in promoting the formation of COs. Our work is the first study in mammals showing the in vivo and in vitro function of mouse and human SHOC1. We show that purified recombinant human SHOC1, an XPF/MUS81 family member, preferentially binds branched DNA molecules but apparently lacks in vitro endonuclease activity, despite its conserved ERCC4-(HhH)2 core structure. Cytological observations suggest that initial steps of recombination are normal in a majority of spermatocytes from SHOC1 hypomorphic mice. However, late stages of recombination appear abnormal, as chromosomal localization of MLH1 is reduced. In agreement, chiasma formation is reduced, and cells arrest at metaphase I with a few lagging chromosomes and subsequent apoptosis. This analysis of SHOC1-deficient mice and the selective localization of SHOC1 to a subset of recombination sites show that SHOC1 acts at key mid-stage steps of the CO formation process. The formation of chromosome axial elements and homologous pairing are apparently normal, but synapsis is altered with SYCP1 frequently failing to extend the full length of the chromosome axes. Finally, we describe that SHOC1 interacts with TEX11, another protein important for the formation of COs, connecting SHOC1 to chromosome axis and structure. PMID:29742103

Identification of discrete sites in Yip1A necessary for regulation of endoplasmic reticulum structure.

PubMed

Dykstra, Kaitlyn M; Ulengin, Idil; Delrose, Nicholas; Lee, Tina H

2013-01-01

The endoplasmic reticulum (ER) of specialized cells can undergo dramatic changes in structural organization, including formation of concentric whorls. We previously reported that depletion of Yip1A, an integral membrane protein conserved between yeast and mammals, caused ER whorl formation reminiscent of that seen in specialized cells. Yip1A and its yeast homologue Yip1p cycle between the ER and early Golgi, have been implicated in a number of distinct trafficking steps, and interact with a conserved set of binding partners including Yif1p/Yif1A and the Ypt1/Ypt31 Rab GTPases. Here, we carried out a mutational analysis of Yip1A to obtain insight into how it regulates ER whorl formation. Most of the Yip1A cytoplasmic domain was dispensable, whereas the transmembrane (TM) domain, especially residues within predicted TM helices 3 and 4, were sensitive to mutagenesis. Comprehensive analysis revealed two discrete functionally required determinants. One was E95 and flanking residues L92 and L96 within the cytoplasmic domain; the other was K146 and nearby residue V152 within the TM domain. Notably, the identified determinants correspond closely to two sites previously found to be essential for yeast viability (E76 and K130 in Yip1p corresponding to E95 and K146 in Yip1A, respectively). In contrast, a third site (E89) also essential for yeast viability (E70 in Yip1p) was dispensable for regulation of whorl formation. Earlier work showed that E76 (E95) was dispensable for binding Yif1p or Ypt1p/Ypt31p, whereas E70 (E89) was required. Collectively, these findings suggest that the ability of Yip1A to bind its established binding partners may be uncoupled from its ability to control ER whorl formation. In support, Yif1A knockdown did not cause ER whorl formation. Thus Yip1A may use the sites identified herein to interact with a novel binding partner to regulate ER membrane organization.

Enzyme-Mediated Conversion of Flavin Adenine Dinucleotide (FAD) to 8-Formyl FAD in Formate Oxidase Results in a Modified Cofactor with Enhanced Catalytic Properties.

PubMed

Robbins, John M; Souffrant, Michael G; Hamelberg, Donald; Gadda, Giovanni; Bommarius, Andreas S

2017-07-25

Flavins, including flavin adenine dinucleotide (FAD), are fundamental catalytic cofactors that are responsible for the redox functionality of a diverse set of proteins. Alternatively, modified flavin analogues are rarely found in nature as their incorporation typically results in inactivation of flavoproteins, thus leading to the disruption of important cellular pathways. Here, we report that the fungal flavoenzyme formate oxidase (FOX) catalyzes the slow conversion of noncovalently bound FAD to 8-formyl FAD and that this conversion results in a nearly 10-fold increase in formate oxidase activity. Although the presence of an enzyme-bound 8-formyl FMN has been reported previously as a result of site-directed mutagenesis studies of lactate oxidase, FOX is the first reported case of 8-formyl FAD in a wild-type enzyme. Therefore, the formation of the 8-formyl FAD cofactor in formate oxidase was investigated using steady-state kinetics, site-directed mutagenesis, ultraviolet-visible, circular dichroism, and fluorescence spectroscopy, liquid chromatography with mass spectrometry, and computational analysis. Surprisingly, the results from these studies indicate not only that 8-formyl FAD forms spontaneously and results in the active form of FOX but also that its autocatalytic formation is dependent on a nearby arginine residue, R87. Thus, this work describes a new enzyme cofactor and provides insight into the little-understood mechanism of enzyme-mediated 8α-flavin modifications.

Cytoskeletal actin dynamics shape a ramifying actin network underpinning immunological synapse formation

PubMed Central

Fritzsche, Marco; Fernandes, Ricardo A.; Chang, Veronica T.; Colin-York, Huw; Clausen, Mathias P.; Felce, James H.; Galiani, Silvia; Erlenkämper, Christoph; Santos, Ana M.; Heddleston, John M.; Pedroza-Pacheco, Isabela; Waithe, Dominic; de la Serna, Jorge Bernardino; Lagerholm, B. Christoffer; Liu, Tsung-li; Chew, Teng-Leong; Betzig, Eric; Davis, Simon J.; Eggeling, Christian

2017-01-01

T cell activation and especially trafficking of T cell receptor microclusters during immunological synapse formation are widely thought to rely on cytoskeletal remodeling. However, important details on the involvement of actin in the latter transport processes are missing. Using a suite of advanced optical microscopes to analyze resting and activated T cells, we show that, following contact formation with activating surfaces, these cells sequentially rearrange their cortical actin across the entire cell, creating a previously unreported ramifying actin network above the immunological synapse. This network shows all the characteristics of an inward-growing transportation network and its dynamics correlating with T cell receptor rearrangements. This actin reorganization is accompanied by an increase in the nanoscale actin meshwork size and the dynamic adjustment of the turnover times and filament lengths of two differently sized filamentous actin populations, wherein formin-mediated long actin filaments support a very flat and stiff contact at the immunological synapse interface. The initiation of immunological synapse formation, as highlighted by calcium release, requires markedly little contact with activating surfaces and no cytoskeletal rearrangements. Our work suggests that incipient signaling in T cells initiates global cytoskeletal rearrangements across the whole cell, including a stiffening process for possibly mechanically supporting contact formation at the immunological synapse interface as well as a central ramified transportation network apparently directed at the consolidation of the contact and the delivery of effector functions. PMID:28691087

Preferential amino acid sequences in alumina-catalyzed peptide bond formation.

PubMed

Bujdák, J; Rode, B M

2002-05-21

The catalytic effect of activated alumina on amino acid condensation was investigated. The readiness of amino acids to form peptide sequences was estimated on the basis of the yield of dipeptides and was found to decrease in the order glycine (Gly), alanine (Ala), leucine (Leu), valine (Val), proline (Pro). For example, approximately 15% Gly was converted to the dipeptide (Gly(2)), 5% to cyclic anhydride (cyc(Gly(2))) and small amounts of tri- (Gly(3)) and tetrapeptide (Gly(4)) were formed after 28 days. On the other hand, only trace amounts of Pro(2) were formed from proline under the same conditions. Preferential formation of certain sequences was observed in the mixed reaction systems containing two amino acids. For example, almost ten times more Gly-Val than Val-Gly was formed in the Gly+Val reaction system. The preferred sequences can be explained on the basis of an inductive effect that side groups have on the nucleophilicity and electrophilicity, respectively, of the amino and carboxyl groups. A comparison with published data of amino acid reactions in other reaction systems revealed that the main trends of preferential sequence formation were the same as those described for the salt-induced peptide formation (SIPF) reaction. The results of this work and other previously published papers show that alumina and related mineral surfaces might have played a crucial role in the prebiotic formation of the first peptides on the primitive earth.

Post-Formation Sodium Loss on the Moon: A Bulk Estimate

NASA Technical Reports Server (NTRS)

Saxena, P.; Killen, R. M.; Airapetian, V.; Petro, N. E.; Mandell, A. M.

2018-01-01

The Moon and Earth are generally similar in terms of composition, but there exist variations in the abundance of certain elements among the two bodies. These differences are a likely consequence of differing physical evolution of the two bodies over the solar system's history. While previous works have assumed this may be due to conditions during the Moonâ€"TM"s formation, we explore the likelihood that the observed depletion in Sodium in lunar samples may be partially due to post-formation mechanisms. Solar effects, loss from a primordial atmosphere and impacts are some of the dominant post-formation mechanisms that we examine. We describe how our past and current modeling efforts indicate that a significant fraction of the observed depletion of sodium in lunar samples relative to a bulk silicate earth composition may have been due to solar activity, atmospheric loss and impacts. Using profiles of sodium abundances from lunar crustal samples may thus serve as a powerful tool towards exploring conditions on the Moon's surface throughout solar system history. Conditions on the Moon immediately after formation may still be recorded in the lunar crust and may provide a window towards interpreting observations from some of the first rocky exoplanets that will be most amenable to characterization. Potential spatial variation of sodium in the lunar crust may be a relevant consideration for future sample return efforts. Sodium Depletion in the Lunar Crust: Lunar

A Vertex Model of Drosophila Ventral Furrow Formation

PubMed Central

Spahn, Philipp; Reuter, Rolf

2013-01-01

Ventral furrow formation in Drosophila is an outstanding model system to study the mechanisms involved in large-scale tissue rearrangements. Ventral cells accumulate myosin at their apical sides and, while being tightly coupled to each other via apical adherens junctions, execute actomyosin contractions that lead to reduction of their apical cell surface. Thereby, a band of constricted cells along the ventral epithelium emerges which will form a tissue indentation along the ventral midline (the ventral furrow). Here we adopt a 2D vertex model to simulate ventral furrow formation in a surface view allowing easy comparison with confocal live-recordings. We show that in order to reproduce furrow morphology seen in vivo, a gradient of contractility must be assumed in the ventral epithelium which renders cells more contractile the closer they lie to the ventral midline. The model predicts previous experimental findings, such as the gain of eccentric morphology of constricting cells and an incremental fashion of apical cell area reduction. Analysis of the model suggests that this incremental area reduction is caused by the dynamical interplay of cell elasticity and stochastic contractility as well as by the opposing forces from contracting neighbour cells. We underpin results from the model through in vivo analysis of ventral furrow formation in wildtype and twi mutant embryos. Our results show that ventral furrow formation can be accomplished as a “tug-of-war” between stochastically contracting, mechanically coupled cells and may require less rigorous regulation than previously thought. Summary For the developmental biologist it is a fascinating question how cells can coordinate major tissue movements during embryonic development. The so-called ventral furrow of the Drosophila embryo is a well-studied example of such a process when cells from a ventral band, spanning nearly the entire length of the embryo, undergo dramatic shape change by contracting their tips and then fold inwards into the interior of the embryo. Although numerous genes have been identified that are critical for ventral furrow formation, it is an open question how cells work together to elicit this tissue rearrangement. We use a computational model to mimic the physical properties of cells in the ventral epithelium and simulate the formation of the furrow. We find that the ventral furrow can form through stochastic self-organisation and that previous experimental observations can be readily explained in our model by considering forces that arise when cells execute contractions while being coupled to each other in a mechanically coherent epithelium. The model highlights the importance of a physical perspective when studying tissue morphogenesis and shows that only a minimal genetic regulation may be required to drive complex processes in embryonic development. PMID:24066163

Marine redox structure at the culmination of the Great Oxidation Event: Insights from the Zaonega Formation, Karelia, Russia

NASA Astrophysics Data System (ADS)

Kipp, M.; Lepland, A.; Buick, R.

2017-12-01

The availability of dissolved oxygen is thought to have been the dominant throttle on the evolution and diversification of eukaryotic life during the Proterozoic Eon [1]. In the mid-Proterozoic, during the interval that presaged the rise of eukaryotes to ecological dominance, oxygen scarcity is thought to have relegated eukaryotic organisms to slivers of oxygenated shallow oceans [2]. However, recent work has suggested that oxygen levels rose dramatically during the early Paleoproterozoic Great Oxidation Event before crashing to the low levels of the mid-Proterozoic [3]. Evidence from selenium isotopes in shales [4] and iodate concentrations in carbonates [5] has even suggested that wide swathes of continental shelves were oxic enough to support eukaryotic organisms at this time. How oxic though, and for how long, remain poorly constrained. Here we present new selenium geochemical data from the Zaonega Formation of Karelia, Russia that can help resolve those questions. Previous work has proposed that the Zaonega Formation, and correlative Francevillian Series of Gabon, record the establishment of an oxygen-rich atmosphere at the culmination of the GOE [6]. Our selenium isotope dataset provides a test for this hypothesis, and can also be used to assess the preservation of the geochemical signatures in the Zaonega Formation. These data point to regional redox fluctuations, but due to the short marine residence time of selenium, extrapolating these results to global phenomena remains difficult. 1. Reinhard, et al (2016) PNAS 2. Planavsky, et al (2014) Science 3. Bekker and Holland (2012) EPSL 4. Kipp, et al (2017) PNAS 5. Hardisty, et al (2014) Geology 6. Kump, et al (2011) Science

Dynamin1 is a novel target for IRSp53 protein and works with mammalian enabled (Mena) protein and Eps8 to regulate filopodial dynamics.

PubMed

Chou, Ai Mei; Sem, Kai Ping; Wright, Graham Daniel; Sudhaharan, Thankiah; Ahmed, Sohail

2014-08-29

Filopodia are dynamic actin-based structures that play roles in processes such as cell migration, wound healing, and axonal guidance. Cdc42 induces filopodial formation through IRSp53, an Inverse-Bin-Amphiphysins-Rvs (I-BAR) domain protein. Previous work from a number of laboratories has shown that IRSp53 generates filopodia by coupling membrane protrusion with actin dynamics through its Src homology 3 domain binding partners. Here, we show that dynamin1 (Dyn1), the large guanosine triphosphatase, is an interacting partner of IRSp53 through pulldown and Förster resonance energy transfer analysis, and we explore its role in filopodial formation. In neuroblastoma cells, Dyn1 localizes to filopodia, associated tip complexes, and the leading edge just behind the anti-capping protein mammalian enabled (Mena). Dyn1 knockdown reduces filopodial formation, which can be rescued by overexpressing wild-type Dyn1 but not the GTPase mutant Dyn1-K44A and the loss-of-function actin binding domain mutant Dyn1-K/E. Interestingly, dynasore, an inhibitor of Dyn GTPase, also reduced filopodial number and increased their lifetime. Using rapid time-lapse total internal reflection fluorescence microscopy, we show that Dyn1 and Mena localize to filopodia only during initiation and assembly. Dyn1 actin binding domain mutant inhibits filopodial formation, suggesting a role in actin elongation. In contrast, Eps8, an actin capping protein, is seen most strongly at filopodial tips during disassembly. Taken together, the results suggest IRSp53 partners with Dyn1, Mena, and Eps8 to regulate filopodial dynamics. © 2014 by The American Society for Biochemistry and Molecular Biology, Inc.

Including crystal structure attributes in machine learning models of formation energies via Voronoi tessellations

NASA Astrophysics Data System (ADS)

Ward, Logan; Liu, Ruoqian; Krishna, Amar; Hegde, Vinay I.; Agrawal, Ankit; Choudhary, Alok; Wolverton, Chris

2017-07-01

While high-throughput density functional theory (DFT) has become a prevalent tool for materials discovery, it is limited by the relatively large computational cost. In this paper, we explore using DFT data from high-throughput calculations to create faster, surrogate models with machine learning (ML) that can be used to guide new searches. Our method works by using decision tree models to map DFT-calculated formation enthalpies to a set of attributes consisting of two distinct types: (i) composition-dependent attributes of elemental properties (as have been used in previous ML models of DFT formation energies), combined with (ii) attributes derived from the Voronoi tessellation of the compound's crystal structure. The ML models created using this method have half the cross-validation error and similar training and evaluation speeds to models created with the Coulomb matrix and partial radial distribution function methods. For a dataset of 435 000 formation energies taken from the Open Quantum Materials Database (OQMD), our model achieves a mean absolute error of 80 meV/atom in cross validation, which is lower than the approximate error between DFT-computed and experimentally measured formation enthalpies and below 15% of the mean absolute deviation of the training set. We also demonstrate that our method can accurately estimate the formation energy of materials outside of the training set and be used to identify materials with especially large formation enthalpies. We propose that our models can be used to accelerate the discovery of new materials by identifying the most promising materials to study with DFT at little additional computational cost.

Adaptive Comparative Judgment: A Tool to Support Students' Assessment Literacy.

PubMed

Rhind, Susan M; Hughes, Kirsty J; Yool, Donald; Shaw, Darren; Kerr, Wesley; Reed, Nicki

Comparative judgment in assessment is a process whereby repeated comparison of two items (e.g., assessment answers) can allow an accurate ranking of all the submissions to be achieved. In adaptive comparative judgment (ACJ), technology is used to automate the process and present pairs of pieces of work over iterative cycles. An online ACJ system was used to present students with work prepared by a previous cohort at the same stage of their studies. Objective marks given to the work by experienced faculty were compared to the rankings given to the work by a cohort of veterinary students (n=154). Each student was required to review and judge 20 answers provided by the previous cohort to a free-text short answer question. The time that students spent on the judgment tasks was recorded, and students were asked to reflect on their experiences after engaging with the task. There was a strong positive correlation between student ranking and faculty marking. A weak positive correlation was found between the time students spent on the judgments and their performance on the part of their own examination that contained questions in the same format. Slightly less than half of the students agreed that the exercise was a good use of their time, but 78% agreed that they had learned from the process. Qualitative data highlighted different levels of benefit from the simplest aspect of learning more about the topic to an appreciation of the more generic lessons to be learned.

Global tropospheric hydroxyl distribution, budget and reactivity

NASA Astrophysics Data System (ADS)

Lelieveld, Jos; Gromov, Sergey; Pozzer, Andrea; Taraborrelli, Domenico

2016-10-01

The self-cleaning or oxidation capacity of the atmosphere is principally controlled by hydroxyl (OH) radicals in the troposphere. Hydroxyl has primary (P) and secondary (S) sources, the former mainly through the photodissociation of ozone, the latter through OH recycling in radical reaction chains. We used the recent Mainz Organics Mechanism (MOM) to advance volatile organic carbon (VOC) chemistry in the general circulation model EMAC (ECHAM/MESSy Atmospheric Chemistry) and show that S is larger than previously assumed. By including emissions of a large number of primary VOC, and accounting for their complete breakdown and intermediate products, MOM is mass-conserving and calculates substantially higher OH reactivity from VOC oxidation compared to predecessor models. Whereas previously P and S were found to be of similar magnitude, the present work indicates that S may be twice as large, mostly due to OH recycling in the free troposphere. Further, we find that nighttime OH formation may be significant in the polluted subtropical boundary layer in summer. With a mean OH recycling probability of about 67 %, global OH is buffered and not sensitive to perturbations by natural or anthropogenic emission changes. Complementary primary and secondary OH formation mechanisms in pristine and polluted environments in the continental and marine troposphere, connected through long-range transport of O3, can maintain stable global OH levels.

The trehalose-specific transporter LpqY-SugABC is required for antimicrobial and anti-biofilm activity of trehalose analogues in Mycobacterium smegmatis.

PubMed

Wolber, Jeffrey M; Urbanek, Bailey L; Meints, Lisa M; Piligian, Brent F; Lopez-Casillas, Irene C; Zochowski, Kailey M; Woodruff, Peter J; Swarts, Benjamin M

2017-10-10

Mycobacteria, including the bacterial pathogen that causes human tuberculosis, possess distinctive pathways for synthesizing and utilizing the non-mammalian disaccharide trehalose. Trehalose metabolism is essential for mycobacterial viability and has been linked to in vitro biofilm formation, which may bear relevance to in vivo drug tolerance. Previous research has shown that some trehalose analogues bearing modifications at the 6-position inhibit growth of various mycobacterial species. In this work, 2-, 5-, and 6-position-modified trehalose analogues were synthesized using our previously reported one-step chemoenzymatic method and shown to inhibit growth and biofilm formation in the two-to three-digit micromolar range in Mycobacterium smegmatis. The trehalose-specific ABC transporter LpqY-SugABC was essential for antimicrobial and anti-biofilm activity, suggesting that inhibition by monosubstituted trehalose analogues requires cellular uptake and does not proceed via direct action on extracellular targets such as antigen 85 acyltransferases or trehalose dimycolate hydrolase. Although the potency of the described compounds in in vitro growth and biofilm assays is moderate, this study reports the first trehalose-based mycobacterial biofilm inhibitors and reinforces the concept of exploiting unique sugar uptake pathways to deliver inhibitors and other chemical cargo to mycobacteria. Copyright © 2017 Elsevier Ltd. All rights reserved.

Applying Item Response Theory Methods to Examine the Impact of Different Response Formats

ERIC Educational Resources Information Center

Hohensinn, Christine; Kubinger, Klaus D.

2011-01-01

In aptitude and achievement tests, different response formats are usually used. A fundamental distinction must be made between the class of multiple-choice formats and the constructed response formats. Previous studies have examined the impact of different response formats applying traditional statistical approaches, but these influences can also…

Madumycin II inhibits peptide bond formation by forcing the peptidyl transferase center into an inactive state

DOE Office of Scientific and Technical Information (OSTI.GOV)

Osterman, Ilya A.; Khabibullina, Nelli F.; Komarova, Ekaterina S.

The emergence of multi-drug resistant bacteria is limiting the effectiveness of commonly used antibiotics, which spurs a renewed interest in revisiting older and poorly studied drugs. Streptogramins A is a class of protein synthesis inhibitors that target the peptidyl transferase center (PTC) on the large subunit of the ribosome. In this work, we have revealed the mode of action of the PTC inhibitor madumycin II, an alanine-containing streptogramin A antibiotic, in the context of a functional 70S ribosome containing tRNA substrates. Madumycin II inhibits the ribosome prior to the first cycle of peptide bond formation. It allows binding of themore » tRNAs to the ribosomal A and P sites, but prevents correct positioning of their CCA-ends into the PTC thus making peptide bond formation impossible. We also revealed a previously unseen drug-induced rearrangement of nucleotides U2506 and U2585 of the 23S rRNA resulting in the formation of the U2506•G2583 wobble pair that was attributed to a catalytically inactive state of the PTC. The structural and biochemical data reported here expand our knowledge on the fundamental mechanisms by which peptidyl transferase inhibitors modulate the catalytic activity of the ribosome.« less

Rutile (β-)MnO2 surfaces and vacancy formation for high electrochemical and catalytic performance.

PubMed

Tompsett, David A; Parker, Stephen C; Islam, M Saiful

2014-01-29

MnO2 is a technologically important material for energy storage and catalysis. Recent investigations have demonstrated the success of nanostructuring for improving the performance of rutile MnO2 in Li-ion batteries and supercapacitors and as a catalyst. Motivated by this we have investigated the stability and electronic structure of rutile (β-)MnO2 surfaces using density functional theory. A Wulff construction from relaxed surface energies indicates a rod-like equilibrium morphology that is elongated along the c-axis, and is consistent with the large number of nanowire-type structures that are obtainable experimentally. The (110) surface dominates the crystallite surface area. Moreover, higher index surfaces than considered in previous work, for instance the (211) and (311) surfaces, are also expressed to cap the rod-like morphology. Broken coordinations at the surface result in enhanced magnetic moments at Mn sites that may play a role in catalytic activity. The calculated formation energies of oxygen vacancy defects and Mn reduction at key surfaces indicate facile formation at surfaces expressed in the equilibrium morphology. The formation energies are considerably lower than for comparable structures such as rutile TiO2 and are likely to be important to the high catalytic activity of rutile MnO2.

The Red Spiral Galaxy UGC11680: Clues for the Inside-Out Quenching.

NASA Astrophysics Data System (ADS)

Bárcenas, J.; Sanchez, S. F.

2016-06-01

Broadly, galaxies can be divided in two groups, thanks to the Color-Magnitude Diagram: the lively star formation ones, ``The blue Cloud'' and galaxies which halted their star formation, ``The Red Sequence''. It is a currently accepted that the galaxies start their lifespan as a blue objects, turning red when they stop to assembly more mass and thus more stars. Nevertheless, This change need to be quick (˜ 1 Gyr), due to the dearth of galaxies between this two populations (the so called ``green valley'').Previous works have found two distinct stellar mass assembly modes, they are termed as ``the inside-out'' and ``the outside-in'' growth scenarios in the literature. In the ``inside-out'' scenario, mass assembly is finished in the galactic central region. In some cases, the inflow gas can fuel the central SuperMassive BlackHole. The subsequent AGN feedback will then shut-off the central star formation. One possible case of this scenario is the galaxy UGC11680, an unusual face-on red spiral galaxy with an AGN type 2, at the red sequence belonging to the CALIFA survey. We used the so called fossil method to study its star formation history and try to understand what happened to its stellar populations.

Insights on dramatic radial fluctuations in track formation by energetic ions

DOE PAGES

Sachan, Ritesh; Lang, Maik; Trautmann, Christina; ...

2016-06-02

We discuss the insights on the unexpected dramatic radial variations in the ion tracks formed by energetic ion (2.3 GeV 208Pb) irradiation at a constant electronic energy-loss (~42 keV/nm) in pyrochlore structured Gd 2TiZrO 7. Though previous studies have shown track formation and average track diameter measurements, this work brings further clarity on why quantitative analysis of ion track formation in Gd 2Ti xZr (1-x)O 7 systems can be more complicated than the currently accepted behavior for ion tracks. The ion track profile is usually considered to be diametrically uniform at constant values of the electronic energy-loss. This study showsmore » the diameter variations to be as large as ~40% within an extremely short incremental track length of ~20 nm. Our molecular dynamics simulations show that these fluctuations in diameter of amorphous core and overall track diameter are attributed to (i) the stochastic nature of inelastic energy loss along the track and (ii) the random substitution of Ti atoms by Zr atoms on the B-site in the pyrochlore lattice. Furthermore, the partial substitution of Ti by Zr increases the favorability of the defect-fluorite structure formation over amorphous phase stochastically, by introducing localized inhomogeneity in atomic structure, density and strain.« less

Insights on dramatic radial fluctuations in track formation by energetic ions

DOE Office of Scientific and Technical Information (OSTI.GOV)

Sachan, Ritesh; Lang, Maik; Trautmann, Christina

We discuss the insights on the unexpected dramatic radial variations in the ion tracks formed by energetic ion (2.3 GeV 208Pb) irradiation at a constant electronic energy-loss (~42 keV/nm) in pyrochlore structured Gd 2TiZrO 7. Though previous studies have shown track formation and average track diameter measurements, this work brings further clarity on why quantitative analysis of ion track formation in Gd 2Ti xZr (1-x)O 7 systems can be more complicated than the currently accepted behavior for ion tracks. The ion track profile is usually considered to be diametrically uniform at constant values of the electronic energy-loss. This study showsmore » the diameter variations to be as large as ~40% within an extremely short incremental track length of ~20 nm. Our molecular dynamics simulations show that these fluctuations in diameter of amorphous core and overall track diameter are attributed to (i) the stochastic nature of inelastic energy loss along the track and (ii) the random substitution of Ti atoms by Zr atoms on the B-site in the pyrochlore lattice. Furthermore, the partial substitution of Ti by Zr increases the favorability of the defect-fluorite structure formation over amorphous phase stochastically, by introducing localized inhomogeneity in atomic structure, density and strain.« less

Conodont biostratigraphy from the upper San Juan Formation (Middle Ordovician) at Niquivil, Argentine Precordillera

NASA Astrophysics Data System (ADS)

Mango, M. J.; Albanesi, G. L.

2018-07-01

The present work deals with the conodont biostratigraphy from the upper San Juan Formation in the section of Niquivil, Central Precodillera of San Juan, Argentina. We study the upper 129.45 m of the San Juan Formation, starting from the upper strata of the second reef horizon up to the top of the formation. Digested limestone samples yielded 20 conodont species. The presence of Tripodus laevis Bradshaw not associated to Baltoniodus navis (Lindström) allows the recognition of the Baltoniodus triangularis-Tripodus laevis Zone, which is interpreted as correlative with the "Parapanderodus" nogamii/Parapanderodus gracilis/Ansella jemtlandica Association of Lehnert (1993, 1995; Lehnert and Keller, 1993), conversely to previous interpretations that suggested the latter as correlative to the Baltoniodus navis Zone. The zonal identification is supported by the associated conodonts Protopanderodus rectus (Lindström), Juanognathus jaanussoni Serpagli, Juanognathus n. sp., Protopanderodus gradatus (Serpagli), Rossodus barnesi Albanesi, Paltodus subaequalis Pander, Drepanodus arcuatus (Pander), Cornuodus longibasis (Lindström), Protopanderodus elongatus Serpagli, Oistodus lanceolatus Pander, Periodon flabellum (Lindström), Semiacontiodus potrerillensis Albanesi, Triangulodus brevibasis (Sergeeva), Paroistodus originalis (Sergeeva), Drepanoistodus forceps (Lindström), Oistodus multicorrugatus Harris, Parapanderodus paracornuformis (Ethington and Clark), Anodontus longus Stouge and Bagnoli, and Pteracontiodus cryptodens Mound. The petrographic microscope analysis of carbonate rocks thin sections refer to proximal middle ramp deposits.

DOE Office of Scientific and Technical Information (OSTI.GOV)

Gould, Benjamin; Greco, Aaron

White etching cracks (WECs) have been identified as a dominant mode of premature failure within wind turbine gearbox bearings. Though WECs have been reported in the field for over a decade, the conditions leading to WECs, and the process by which this failure culminates, are both highly debated. In previously published work, the generation of WECs on a benchtop scale was linked to sliding at the surface of the test sample, it was also postulated that the generation of WECs was dependent on the cumulative energy that had been applied to the sample over the entirety of the test. Inmore » this paper, a three ring on roller bench top test rig is used to systematically alter the cumulative energy that a sample experiences through changes in normal load, sliding, and run time, in an attempt to correlate cumulative energy with the formation of WECs. It was determined that, in the current test setup, the presence of WECs can be predicted by this energy criterion. The authors then used this information to study the process by which WECs initiate. Lastly, it was found that, under the current testing conditions, the formation of a dark etching microstructure precedes the formation of a crack, and a crack precedes the formation of white etching microstructure.« less

Radiative Hydrodynamic Simulations of In Situ Star Formation in the Galactic Center

NASA Astrophysics Data System (ADS)

Frazer, Chris; Heitsch, Fabian

2018-01-01

Many stars observed in the Galactic Center (GC) orbit the supermassive black hole (SMBH), Sagittarius A*, in a region where the extreme gravitational field is expected to inhibit star formation. Yet, many of these stars are young which favors an in situ formation scenario. Previous numerical work on this topic has focused on two possible solutions. First, the tidal capture of a > 10^4 Msun infalling molecular cloud by an SMBH may result in the formation of a surrounding gas disk which then rapidly cools and forms stars. This process results in stellar populations that are consistent with the observed stellar disk in the GC. Second, dense gas clumps of approximately 100 Msun on highly eccentric orbits about an SMBH can experience sparks of star formation via orbital compressions occurring during pericenter passage. In my dissertation, I build upon these models using a series of grid-based radiative hydrodynamic simulations, including the effects of both ionizing ultraviolet light from existing stars as well as X-ray radiation emanating from the central black hole. Radiation is treated with an adaptive ray-tracing routine, including appropriate heating and cooling for both neutral and ionized gas. These models show that ultraviolet radiation is sufficiently strong to heat low mass gas clouds, thus suppressing star formation from clump compression. Gas disks that form from cloud capture become sufficiently dense to provide shielding from the radiation of existing central stars, thus allowing star formation to continue. Conversely, X-rays easily penetrate and heat the potentially star forming gas. For sufficiently high radiation fields, this provides a mechanism to disrupt star formation for both scenarios considered above.

Health Professionals Prefer to Communicate Risk-Related Numerical Information Using "1-in-X" Ratios.

PubMed

Sirota, Miroslav; Juanchich, Marie; Petrova, Dafina; Garcia-Retamero, Rocio; Walasek, Lukasz; Bhatia, Sudeep

2018-04-01

Previous research has shown that format effects, such as the "1-in-X" effect-whereby "1-in-X" ratios lead to a higher perceived probability than "N-in-N*X" ratios-alter perceptions of medical probabilities. We do not know, however, how prevalent this effect is in practice; i.e., how often health professionals use the "1-in-X" ratio. We assembled 4 different sources of evidence, involving experimental work and corpus studies, to examine the use of "1-in-X" and other numerical formats quantifying probability. Our results revealed that the use of the "1-in-X" ratio is prevalent and that health professionals prefer this format compared with other numerical formats (i.e., the "N-in-N*X", %, and decimal formats). In Study 1, UK family physicians preferred to communicate prenatal risk using a "1-in-X" ratio (80.4%, n = 131) across different risk levels and regardless of patients' numeracy levels. In Study 2, a sample from the UK adult population ( n = 203) reported that most GPs (60.6%) preferred to use "1-in-X" ratios compared with other formats. In Study 3, "1-in-X" ratios were the most commonly used format in a set of randomly sampled drug leaflets describing the risk of side effects (100%, n = 94). In Study 4, the "1-in-X" format was the most commonly used numerical expression of medical probabilities or frequencies on the UK's NHS website (45.7%, n = 2,469 sentences). The prevalent use of "1-in-X" ratios magnifies the chances of increased subjective probability. Further research should establish clinical significance of the "1-in-X" effect.

Toward Homosuccinate Fermentation: Metabolic Engineering of Corynebacterium glutamicum for Anaerobic Production of Succinate from Glucose and Formate

PubMed Central

Litsanov, Boris; Brocker, Melanie

2012-01-01

Previous studies have demonstrated the capability of Corynebacterium glutamicum for anaerobic succinate production from glucose under nongrowing conditions. In this work, we have addressed two shortfalls of this process, the formation of significant amounts of by-products and the limitation of the yield by the redox balance. To eliminate acetate formation, a derivative of the type strain ATCC 13032 (strain BOL-1), which lacked all known pathways for acetate and lactate synthesis (Δcat Δpqo Δpta-ackA ΔldhA), was constructed. Chromosomal integration of the pyruvate carboxylase gene pycP458S into BOL-1 resulted in strain BOL-2, which catalyzed fast succinate production from glucose with a yield of 1 mol/mol and showed only little acetate formation. In order to provide additional reducing equivalents derived from the cosubstrate formate, the fdh gene from Mycobacterium vaccae, coding for an NAD+-coupled formate dehydrogenase (FDH), was chromosomally integrated into BOL-2, leading to strain BOL-3. In an anaerobic batch process with strain BOL-3, a 20% higher succinate yield from glucose was obtained in the presence of formate. A temporary metabolic blockage of strain BOL-3 was prevented by plasmid-borne overexpression of the glyceraldehyde 3-phosphate dehydrogenase gene gapA. In an anaerobic fed-batch process with glucose and formate, strain BOL-3/pAN6-gap accumulated 1,134 mM succinate in 53 h with an average succinate production rate of 1.59 mmol per g cells (dry weight) (cdw) per h. The succinate yield of 1.67 mol/mol glucose is one of the highest currently described for anaerobic succinate producers and was accompanied by a very low level of by-products (0.10 mol/mol glucose). PMID:22389371

The diversity of atomic hydrogen in slow rotator early-type galaxies

NASA Astrophysics Data System (ADS)

Young, Lisa M.; Serra, Paolo; Krajnović, Davor; Duc, Pierre-Alain

2018-06-01

We present interferometric observations of H I in nine slow rotator early-type galaxies of the Atlas3D sample. With these data, we now have sensitive H I searches in 34 of the 36 slow rotators. The aggregate detection rate is 32 per cent ± 8 per cent, consistent with the previous work; however, we find two detections with extremely high H I masses, whose gas kinematics are substantially different from what was previously known about H I in slow rotators. These two cases (NGC 1222 and NGC 4191) broaden the known diversity of H I properties in slow rotators. NGC 1222 is a merger remnant with prolate-like rotation and, if it is indeed prolate in shape, an equatorial gas disc; NGC 4191 has two counter-rotating stellar discs and an unusually large H I disc. We comment on the implications of this disc for the formation of 2σ galaxies. In general, the H I detection rate, the incidence of relaxed H I discs, and the H I/stellar mass ratios of slow rotators are indistinguishable from those of fast rotators. These broad similarities suggest that the H I we are detecting now is unrelated to the galaxies' formation processes and was often acquired after their stars were mostly in place. We also discuss the H I non-detections; some of these galaxies that are undetected in H I or CO are detected in other tracers (e.g. FIR fine structure lines and dust). The question of whether there is cold gas in massive galaxies' scoured nuclear cores still needs work. Finally, we discuss an unusual isolated H I cloud with a surprisingly faint (undetected) optical counterpart.

Increase of rotation angle of soil layers during plow operation

NASA Astrophysics Data System (ADS)

Vasilenko, VV; Afonichev, D. N.; Vasilenko, S. V.; Khakhulin, A. N.

2018-03-01

One of the advantages of plowing is the ability of the plow to hide the weed seeds deep into the soil. The depth of the embankment exceeds 10-12 cm, from there the weeds can not rise to the surface of the soil. They perish halfway. But for this, it is necessary to wrap the soil layers at an angle close to 180 °. Modern ploughs can not turn the layers of soil at an angle of more than 135 °, therefore the plow is required to be equipped with additional working elements. The aim of the study is to create an adaptation to the plow to expand the furrow before laying the next soil layer. In a wide furrow, the formation will completely tip, the previous layer will not interfere with it. The device is a set of vertical shields. Each shield is fixed behind the working body of the plow. It is installed with an angle of attack of 20-25 ° to move the previous layer to expand the furrow by 10-12 cm. The model and industrial samples of the plow have shown improved agrotechnical indicators. The average angle of the formation rotation was 177 °, the burial of plant residues in the soil increased from 61 to 99%. The field surface with blocks more than 5 cm decreased from 36.3 to 13.4%, the height of the ridges decreased from 7 to 4 cm. The force of soil pressure on the shield was measured by a strain gage. It is 130-330 N depending on the depth of processing and the speed of movement. The increase in power costs for the four-hull plow was 190-750 W. The coulters on the plow are unnecessary, and this saves energy more than its increase for shields.

Annotated checklist of Georgia birds

USGS Publications Warehouse

Beaton, G.; Sykes, P.W.; Parrish, J.W.

2003-01-01

This edition of the checklist includes 446 species, of which 407 are on the Regular Species List, 8 on the Provisional, and 31 on the Hypothetical. This new publication has been greatly expanded and much revised over the previous checklist (GOS Occasional Publ. No. 10, 1986, 48 pp., 6x9 inches) to a 7x10-inch format with an extensive Literature Cited section added, 22 species added to the Regular List, 2 to the Provisional List, and 9 to the Hypothetical List. Each species account is much more comprehensive over all previous editions of the checklist. Among some of the new features are citations for sources of most information used, high counts of individuals for each species on the Regular List, extreme dates of occurrence within physiographic regions, a list of abbreviations and acronyms, and for each species the highest form of verifiable documentation given with its repository institution with a catalog number. This checklist is helpful for anyone working with birds in the Southeastern United States or birding in that region. Sykes' contribution to this fifth edition of the Annotated Checklist of Georgia Birds includes: suggestion of the large format and spiral binding, use of Richard A. Parks' painting of the Barn Owl on the front cover, use of literature citations throughout, and inclusion of high counts for each species. Sykes helped plan all phases of the publication, wrote about 90% of the Introduction and 84 species accounts (Osprey through Red Phalarope), designed the four maps in the introduction section and format for the Literature Cited, and with Giff Beaton designed the layout of the title page.

The glabra1 Mutation Affects Cuticle Formation and Plant Responses to Microbes1[C][W][OA

PubMed Central

Xia, Ye; Yu, Keshun; Navarre, Duroy; Seebold, Kenneth; Kachroo, Aardra; Kachroo, Pradeep

2010-01-01

Systemic acquired resistance (SAR) is a form of defense that provides resistance against a broad spectrum of pathogens in plants. Previous work indicates a role for plastidial glycerolipid biosynthesis in SAR. Specifically, mutations in FATTY ACID DESATURASE7 (FAD7), which lead to reduced trienoic fatty acid levels and compromised plastidial lipid biosynthesis, have been associated with defective SAR. We show that the defective SAR in Arabidopsis (Arabidopsis thaliana) fad7-1 plants is not associated with a mutation in FAD7 but rather with a second-site mutation in GLABRA1 (GL1), a gene well known for its role in trichome formation. The compromised SAR in gl1 plants is associated with impairment in their cuticles. Furthermore, mutations in two other components of trichome development, GL3 and TRANSPARENT TESTA GLABRA1, also impaired cuticle development and SAR. This suggests an overlap in the biochemical pathways leading to cuticle and trichome development. Interestingly, exogenous application of gibberellic acid (GA) not only enhanced SAR in wild-type plants but also restored SAR in gl1 plants. In contrast to GA, the defense phytohoromes salicylic acid and jasmonic acid were unable to restore SAR in gl1 plants. GA application increased levels of cuticular components but not trichome formation on gl1 plants, thus implicating cuticle, but not trichomes, as an important component of SAR. Our findings question the prudence of using mutant backgrounds for genetic screens and underscore a need to reevaluate phenotypes previously studied in the gl1 background. PMID:20699396

Preliminary geologic map of the Black Mountain area northeast of Victorville, San Bernardino County, California

USGS Publications Warehouse

Stone, Paul

2006-01-01

The Black Mountain area is in the Mojave Desert about 20 km northeast of Victorville, California. The geology of this area is of interest primarily for its excellent exposures of the early Mesozoic Fairview Valley Formation, a sequence of weakly metamorphosed sedimentary rocks including a thick, commercially important unit of limestone conglomerate that has been mined for cement at Black Mountain Quarry for several decades. Recent geochronologic work has shown that the Fairview Valley Formation is probably of Early Jurassic age. This preliminary geologic map of the Black Mountain area depicts the stratigraphic and structural relations of the Fairview Valley Formation and the associated rocks, most notably the overlying Sidewinder Volcanics of Early(?), Middle, and Late(?) Jurassic age. The map is based on new field studies by the author designed to clarify details of the stratigraphy and structure unresolved by previous investigations. The map is considered preliminary because the ages of some geologic units critical for a satisfactory understanding of the stratigraphic and structural framework remain unknown. The map area also includes a segment of the Helendale Fault, one of several faults of known or inferred late Cenozoic right-lateral displacement that make up the Eastern California Shear Zone. The fault is marked by aligned northeast-facing scarps in Pleistocene or older alluvial deposits and the underlying bedrock units. Relations in the map area suggest that right-lateral displacement on the Helendale Fault probably does not exceed 2 km, a conclusion compatible with previous estimates of displacement on this fault based on relations both within and outside the Black Mountain area.

The role of sedimentology, oceanography, and alteration on the δ56Fe value of the Sokoman Iron Formation, Labrador Trough, Canada

NASA Astrophysics Data System (ADS)

Raye, Urmidola; Pufahl, Peir K.; Kyser, T. Kurtis; Ricard, Estelle; Hiatt, Eric E.

2015-09-01

The Sokoman Formation is a ca. 100-m-thick succession of interbedded iron formation and fine-grained siliciclastics deposited at 1.88 Ga. Accumulation occurred on a dynamic paleoshelf where oxygen stratification, coastal upwelling of hydrothermally derived Fe and Si, microbial processes, tide and storm currents, diagenesis, and low-grade prehnite-pumpellyite metamorphism controlled lithofacies character and produced complex associations of multigenerational chert, hematite, magnetite, greenalite, stilpnomelane and Fe carbonate. Hematite-rich facies were deposited along suboxic segments of the coastline where photosynthetic oxygen oases impinged on the seafloor. Hematitic, cross-stratified grainstones were formed by winnowing and reworking of freshly precipitated Fe-(oxyhydr)oxide and opal-A by waves and currents into subaqueous dunes. Magnetite-rich facies contain varying proportions of greenalite and stilpnomelane and record deposition in anoxic middle shelf environments beneath an oxygen chemocline. Minor negative Ce anomalies in hematitic facies, but prominent positive Ce and Eu anomalies and high LREE/HREE ratios in magnetite-rich facies imply the existence of a weakly oxygenated surface ocean above anoxic bottom waters. The Fe isotopic composition of 31 whole rock (-0.46 ⩽ δ56Fe ⩽ 0.47‰) and 21 magnetite samples (-0.29 ⩽ δ56Fe ⩽ 0.22‰) from suboxic and anoxic lithofacies was controlled primarily by the physical oceanography of the paleoshelf. Despite low-grade metamorphism recorded by the δ18O values of paragenetically related quartz and magnetite, the Sokoman Formation preserves a robust primary Fe isotopic signal. Coastal upwelling is interpreted to have affected the isotopic equilibria between Fe2+aq and Fe-(oxyhydr)oxide in open marine versus coastal environments, which controlled the Fe isotopic composition of lithofacies. Unlike previous work that focuses on microbial and abiotic fractionation processes with little regard for paleoenvironment, our work demonstrates that depositional setting is paramount in governing the Fe isotopic composition of iron formations irrespective of what Fe-bearing minerals precipitated.

Stratigraphy, sedimentology, and geothermal reservoir potential of the volcaniclastic Cura-Mallín succession at Lonquimay, Chile

NASA Astrophysics Data System (ADS)

Pedroza, Viviana; Le Roux, Jacobus P.; Gutiérrez, Néstor M.; Vicencio, Vladimir E.

2017-08-01

The Tolhuaca Volcano near Lonquimay in south-central Chile has been the subject of several studies due to its geothermal manifestations, but little is known about the stratigraphy and reservoir potential of the Cura-Mallín Formation forming its basement. Field work and U-Pb dating of detrital zircons allow us to redefine this succession as the Cura-Mallín Group, consisting of the volcano-sedimentary Guapitrío Formation, sedimentary Río Pedregoso Formation, and volcano-sedimentary Mitrauquén Formation. The Río Pedregoso Formation can be subdivided into three formal units, namely the Quilmahue Member, Rucañanco Member, and Bío-Bío Member. The base of the Quilmahue Member interfingers laterally with the base of the Guapitrío Formation, for which a previous K/Ar date of 22.0 ± 0.9 Ma was apparently discarded by the original authors. However, this date is consistent with the stratigraphic position of the Quilmahue Member and new zircon dates from the overlying units, also coinciding with the initiation of an extensional phase in the Bíobío-Aluminé Basin. Deposition of the Quilmahue Member continued throughout the early Miocene, as confirmed by dates of 17.5 Ma reported by previous authors and 16.5 Ma obtained in this study. The Rucañanco Member was deposited during the Serravalian around 12.6 Ma, whereas the Bío-Bío Member was dated at the Serravalian-Tortonian limit (11.6 Ma). Although all three members were deposited in a fluvio-lacustrine environment, they were dominated respectively by flood plains with crevasse splays, lake margins with distributary mouth bars and Gilbert-type deltas, and distal braided and meandering rivers. Whereas the Quilmahue Member was deposited during basin extension, the Rucañanco Member was formed during a period of basin inversion and compression. Temporary tectonic quiescence during deposition of the Bío-Bío Member allowed denudation of the landscape, but around 9.5 Ma tectonism was renewed again during deposition of the Mitrauquén Formation. From a geothermal point of view, the Guapitrío Formation has a low potential to host significant reservoirs due to extensive hydrothermal alteration that produced secondary minerals clogging pore spaces and fractures. In the Río Pedregoso Formation, on the other hand, the Rucañanco Member seems to have the best reservoir potential, as it has relatively thick, semi-permeable sandstones and conglomerates deposited in a lake-margin environment.

Band structure dynamics in indium wires

NASA Astrophysics Data System (ADS)

Chávez-Cervantes, M.; Krause, R.; Aeschlimann, S.; Gierz, I.

2018-05-01

One-dimensional indium wires grown on Si(111) substrates, which are metallic at high temperatures, become insulating below ˜100 K due to the formation of a charge density wave (CDW). The physics of this transition is not conventional and involves a multiband Peierls instability with strong interband coupling. This CDW ground state is readily destroyed with femtosecond laser pulses resulting in a light-induced insulator-to-metal phase transition. The current understanding of this transition remains incomplete, requiring measurements of the transient electronic structure to complement previous investigations of the lattice dynamics. Time- and angle-resolved photoemission spectroscopy with extreme ultraviolet radiation is applied to this end. We find that the transition from the insulating to the metallic band structure occurs within ˜660 fs, which is a fraction of the amplitude mode period. The long lifetime of the transient state (>100 ps) is attributed to trapping in a metastable state in accordance with previous work.

Exploring the hidden interior of the Earth with directional neutrino measurements.

PubMed

Leyton, Michael; Dye, Stephen; Monroe, Jocelyn

2017-07-10

Roughly 40% of the Earth's total heat flow is powered by radioactive decays in the crust and mantle. Geo-neutrinos produced by these decays provide important clues about the origin, formation and thermal evolution of our planet, as well as the composition of its interior. Previous measurements of geo-neutrinos have all relied on the detection of inverse beta decay reactions, which are insensitive to the contribution from potassium and do not provide model-independent information about the spatial distribution of geo-neutrino sources within the Earth. Here we present a method for measuring previously unresolved components of Earth's radiogenic heating using neutrino-electron elastic scattering and low-background, direction-sensitive tracking detectors. We calculate the exposures needed to probe various contributions to the total geo-neutrino flux, specifically those associated to potassium, the mantle and the core. The measurements proposed here chart a course for pioneering exploration of the veiled inner workings of the Earth.

Conformationally controlled ultrafast intersystem crossing in bithiophene systems.

PubMed

Skov, Anders B; Larsen, Martin A B; Liisberg, Mikkel B; Hansen, Thorsten; Sølling, Theis I

2018-05-16

Bithiophenes serve as model systems for larger polythiophenes used in solar cell applications and molecular electronics. We report a study of ultrafast dynamics of two bithiophene systems measured with femtosecond time-resolved photoelectron spectroscopy, and show that their intersystem crossing takes place within the first few picoseconds after excitation, in line with previous studies. We show that the intersystem crossing rate can be explained in terms of arguments based on symmetry of the S1 minimum energy geometry, which depends on the specific conformation of bithiophene. Furthermore, this work shows that the minor cis-conformer contributes to an even higher intersystem crossing rate than the major trans conformer. The work presented here can provide guiding principles towards the design of solar cell components with even faster formation of long-lived excited states for solar energy harvesting.

Theoretical analysis of the axial growth of nanowires starting with a binary eutectic droplet via vapor-liquid-solid mechanism

NASA Astrophysics Data System (ADS)

Liu, Qing; Li, Hejun; Zhang, Yulei; Zhao, Zhigang

2018-06-01

A series of theoretical analysis is carried out for the axial vapor-liquid-solid (VLS) growth of nanowires starting with a binary eutectic droplet. The growth model considering the entire process of axial VLS growth is a development of the approaches already developed by previous studies. In this model, the steady and unsteady state growth are considered both. The amount of solute species in a variable liquid droplet, the nanowire length, radius, growth rate and all other parameters during the entire axial growth process are treated as functions of growth time. The model provides theoretical predictions for the formation of nanowire shape, the length-radius and growth rate-radius dependences. It is also suggested by the model that the initial growth of single nanowire is significantly affected by Gibbs-Thompson effect due to the shape change. The model was applied on predictions of available experimental data of Si and Ge nanowires grown from Au-Si and Au-Ge systems respectively reported by other works. The calculations with the proposed model are in satisfactory agreement with the experimental results of the previous works.

DOE Office of Scientific and Technical Information (OSTI.GOV)

Nersisyan, Henrik; Cid, Adrian Fernandez; Amendola, Luca, E-mail: h.nersisyan@thphys.uni-heidelberg.de, E-mail: fernandez@thphys.uni-heidelberg.de, E-mail: l.amendola@thphys.uni-heidelberg.de

In this work, we extend previous analyses of the structure formation in the f (□{sup −1} R ) model of nonlocal gravity proposed by Deser and Woodard (DW), which reproduces the background expansion of ΛCDM with no need of a cosmological constant nor of any dimensional constant beside Newton's one. A previous analysis based on redshift-space distortions (RSD) data concluded that the model was ruled out. In this work we revisit the issue and find that, when recast in a localized model, the DW model is not ruled out and actually gives a better fit to RSD data than ΛCDM.more » In fact, the DW model presents a suppressed growth of matter perturbations with respect to ΛCDM and a slightly lower value of σ{sub 8}, as favored by observations. We also produce analytical approximations of the two modified gravity functions, i.e. the anisotropic stress η and the relative change of Newton's constant Y , and of f σ{sub 8}( z ) as a function of redshift. Finally, we also show how much the fit depends on initial conditions when these are generalized with respect to a standard matter-dominated era.« less

RX J0848.6+4453: The evolution of galaxy sizes and stellar populations in A z = 1.27 cluster

DOE Office of Scientific and Technical Information (OSTI.GOV)

Jørgensen, Inger; Chiboucas, Kristin; Schiavon, Ricardo P.

2014-12-01

RX J0848.6+4453 (Lynx W) at redshift 1.27 is part of the Lynx Supercluster of galaxies. We present an analysis of the stellar populations and star formation history for a sample of 24 members of the cluster. Our study is based on deep optical spectroscopy obtained with Gemini North combined with imaging data from Hubble Space Telescope. Focusing on the 13 bulge-dominated galaxies for which we can determine central velocity dispersions, we find that these show a smaller evolution with redshift of sizes and velocity dispersions than reported for field galaxies and galaxies in poorer clusters. Our data show that themore » galaxies in RX J0848.6+4453 populate the fundamental plane (FP) similar to that found for lower-redshift clusters. The zero-point offset for the FP is smaller than expected if the cluster's galaxies are to evolve passively through the location of the FP we established in our previous work for z = 0.8-0.9 cluster galaxies and then to the present-day FP. The FP zero point for RX J0848.6+4453 corresponds to an epoch of last star formation at z{sub form}=1.95{sub −0.15}{sup +0.22}. Further, we find that the spectra of the galaxies in RX J0848.6+4453 are dominated by young stellar populations at all galaxy masses and in many cases show emission indicating low-level ongoing star formation. The average age of the young stellar populations as estimated from the strength of the high-order Balmer line Hζ is consistent with a major star formation episode 1-2 Gyr prior, which in turn agrees with z {sub form} = 1.95. These galaxies dominated by young stellar populations are distributed throughout the cluster. We speculate that low-level star formation has not yet been fully quenched in the center of this cluster, possibly because the cluster is significantly poorer than other clusters previously studied at similar redshifts, which appear to have very little ongoing star formation in their centers. The mixture in RX J0848.6+4453 of passive galaxies with young stellar populations and massive galaxies still experiencing some star formation appears similar to the galaxy populations recently identified in two z ≈ 2 clusters.« less

Continued Development of Python-Based Thomson Data Analysis and Associated Visualization Tool for NSTX-U

NASA Astrophysics Data System (ADS)

Wallace, William; Miller, Jared; Diallo, Ahmed

2015-11-01

MultiPoint Thomson Scattering (MPTS) is an established, accurate method of finding the temperature, density, and pressure of a magnetically confined plasma. Two Nd:YAG (1064 nm) lasers are fired into the plasma with a effective frequency of 60 Hz, and the light is Doppler shifted by Thomson scattering. Polychromators on the NSTX-U midplane collect the scattered photons at various radii/scattering angles, and the avalanche photodiode voltages are saved to an MDSplus tree for later analysis. IDL code is then used to determine plasma temperature, pressure, and density from the captured polychromator measurements via Selden formulas. [1] Previous work [2] converted the single-processor IDL code into Python code, and prepared a new architecture for multiprocessing MPTS in parallel. However, that work was not completed to the generation of output data and curve fits that match with the previous IDL. This project refactored the Python code into a object-oriented architecture, and created a software test suite for the new architecture which allowed identification of the code which generated the difference in output. Another effort currently underway is to display the Thomson data in an intuitive, interactive format. This work was supported in part by the U.S. Department of Energy, Office of Science, Office of Workforce Development for Teachers and Scientists (WDTS) under the Community College Internship (CCI) program.

Demonstrating ultrafast polarization dynamics in spin-VCSELs

NASA Astrophysics Data System (ADS)

Lindemann, Markus; Pusch, Tobias; Michalzik, Rainer; Gerhardt, Nils C.; Hofmann, Martin R.

2018-02-01

Vertical-cavity surface-emitting lasers (VCSELs) are used for short-haul optical data transmission with increasing bit rates. The optimization involves both enhanced device designs and the use of higher-order modulation formats. In order to improve the modulation bandwidth substantially, the presented work employs spin-pumped VCSELs (spin-VCSELs) and their polarization dynamics instead of relying on intensity-modulated devices. In spin-VCSELs, the polarization state of the emitted light is controllable via spin injection. By optical spin pumping a single-mode VCSEL is forced to emit light composed of both orthogonal linearly polarized fundamental modes. The frequencies of these two modes differ slightly by a value determined by the cavity birefringence. As a result, the circular polarization degree oscillates with their beat frequency, i.e., with the birefringence-induced mode splitting. We used this phenomenon to show so-called polarization oscillations, which are generated by pulsed spin injection. Their frequency represents the polarization dynamics resonance frequency and can be tuned over a wide range via the birefringence, nearly independent from any other laser parameter. In previous work we demonstrated a maximum birefringence-induced mode splitting of more than 250 GHz. In this work, compared to previous publications, we show an almost doubled polarization oscillation frequency of more than 80 GHz. Furthermore, we discuss concepts to achieve even higher values far above 100 GHz.

Systems and methods for multi-fluid geothermal energy systems

DOEpatents

Buscheck, Thomas A.

2017-09-19

A method for extracting geothermal energy from a geothermal reservoir formation. A production well is used to extract brine from the reservoir formation. At least one of nitrogen (N.sub.2) and carbon dioxide (CO.sub.2) may be used to form a supplemental working fluid which may be injected into a supplemental working fluid injection well. The supplemental working fluid may be used to augment a pressure of the reservoir formation, to thus drive a flow of the brine out from the reservoir formation.

Walking the line: Understanding pedestrian behaviour and risk at rail level crossings with cognitive work analysis.

PubMed

Read, Gemma J M; Salmon, Paul M; Lenné, Michael G; Stanton, Neville A

2016-03-01

Pedestrian fatalities at rail level crossings (RLXs) are a public safety concern for governments worldwide. There is little literature examining pedestrian behaviour at RLXs and no previous studies have adopted a formative approach to understanding behaviour in this context. In this article, cognitive work analysis is applied to understand the constraints that shape pedestrian behaviour at RLXs in Melbourne, Australia. The five phases of cognitive work analysis were developed using data gathered via document analysis, behavioural observation, walk-throughs and critical decision method interviews. The analysis demonstrates the complex nature of pedestrian decision making at RLXs and the findings are synthesised to provide a model illustrating the influences on pedestrian decision making in this context (i.e. time, effort and social pressures). Further, the CWA outputs are used to inform an analysis of the risks to safety associated with pedestrian behaviour at RLXs and the identification of potential interventions to reduce risk. Copyright © 2015 Elsevier Ltd and The Ergonomics Society. All rights reserved.

Searching for Partners of Cool Senior Citizens

NASA Astrophysics Data System (ADS)

Jao, Wei-Chun; Henry, T. J.

2012-01-01

Mass is one of the most fundamental parameters in stellar astronomy. In order to measure dynamical masses, one needs to find nearby binary systems that can be resolved and monitored, ideally with orbital periods that completely wrap in a reasonable amount of time. Many surveys have been made of nearby main sequence dwarfs, and their mass-luminosity relation is well established. As part of our Cool Subdwarf Investigations (CSI) program, we are searching for subdwarf binaries of spectral types K and M within 60 parsecs to measure their multiplicity rate and to reveal binaries appropriate for mass determinations. Here we present results of our CSI work using HST's Fine Guidance Sensors. When combined with previous CSI work and results in the literature, we find the multiplicity rate of subdwarfs, 21%, to be surprisingly low compared to that of similar main sequence K and M stars, 37%. This work has several implications, including that the star formation and/or evolution history of subdwarfs is different than for dwarfs, and that ideal systems for subdwarf mass determinations are difficult to find. This work is supported by HST grant GO-11943.

Palynology and age of some Cretaceous nonmarine deposits in Mongolia and China

USGS Publications Warehouse

Nichols, D.J.; Matsukawa, M.; Ito, M.

2006-01-01

To provide biostratigraphic and paleoecologic data for a major international project studying dinosaur trackways in eastern Asia, samples were collected for palynological analysis from the Choyr Basin of southeastern Mongolia and the Yanji Basin, Jilin Province, northeastern China. Palynologically productive samples from the Choyr Basin are from strata previously identified as either the Shinekhudag Formation or the Zuunbayan Formation but recently renamed the Khuren Dukh Formation; productive samples from the Yanji Basin are from the Tongfosi Formation. The biostratigraphically most important palynomorphs from both units are angiosperm pollen. The Khuren Dukh Formation is determined to be middle to late Albian in age. The Tongfosi Formation is determined to be early Cenomanian in age. These results conflict with some previously published interpretations of the ages of these units. Lacustrine depositional environments are indicated for both units by the presence of freshwater algae in both deposits. ?? 2006 Elsevier Ltd. All rights reserved.

Modeling the formation and aging of secondary organic aerosols in the Los Angeles metropolitan region during the CalNex 2010 field campaign

NASA Astrophysics Data System (ADS)

Hayes, P. L.; Ma, P. K.; Jimenez, J. L.; Zhao, Y.; Robinson, A. L.; Carlton, A. M. G.; Baker, K. R.; Ahmadov, R.; Washenfelder, R. A.; Alvarez, S. L.; Rappenglück, B.; Gilman, J.; Kuster, W.; De Gouw, J. A.; Prevot, A. S.; Zotter, P.; Szidat, S.; Kleindienst, T. E.; Offenberg, J. H.

2015-12-01

Several different literature parameterizations for the formation and evolution of urban secondary organic aerosol (SOA) are evaluated using a box model representing the Los Angeles Region during CalNex. The model SOA formed only from the oxidation of VOCs (V-SOA) is insufficient to explain the observed SOA concentrations, even when using SOA parameterizations with multi-generation oxidation that produce much higher yields than have been observed in chamber experiments, or when increasing yields to their upper limit estimates accounting for recently reported losses of vapors to chamber walls. Including SOA from primary semi-volatile and intermediate volatility organic compounds (P-S/IVOCs) following the parameterizations of Robinson et al. (2007), Grieshop et al. (2009), or Pye and Seinfeld (2010) improves model/measurement agreement for mass concentration at shorter photochemical ages (0.5 days). Our results strongly suggest that other precursors besides VOCs are needed to explain the observed SOA concentrations. In contrast, all of the literature P-S/IVOC parameterizations over-predict urban SOA formation at long photochemical ages (3 days) compared to observations from multiple sites, which can lead to problems in regional and global modeling. Sensitivity studies that reduce the IVOC emissions by one-half in the model improve SOA predictions at these long ages. In addition, when IVOC emissions in the Robinson et al. parameterization are constrained using recently reported measurements of these species model/measurement agreement is achieved. The amounts of SOA mass from diesel vehicles, gasoline vehicles, and cooking emissions are estimated to be 16 - 27%, 35 - 61%, and 19 - 35%, respectively, depending on the parameterization used, which is consistent with the observed fossil fraction of urban SOA, 71(±3)%. The percentage of SOA from diesel vehicle emissions is the same, within the estimated uncertainty, as reported in previous work that analyzed the weekly cycles in SOA concentrations (Bahreini et al., 2012; Hayes et al., 2013). However, the modeling work presented here suggests a strong anthropogenic source of modern carbon in urban SOA, possibly cooking emissions, that was not accounted for in those previous studies, and which is higher on weekends.

Heating hydrocarbon containing formations in a spiral startup staged sequence

DOEpatents

Vinegar, Harold J [Bellaire, TX; Miller, David Scott [Katy, TX

2009-12-15

Methods for treating a hydrocarbon containing formation are described herein. Methods may include treating a first zone of the formation. Treatment of a plurality of zones of the formation may be begun at selected times after the treatment of the first zone begins. The treatment of at least two successively treated zones may begin at a selected time after treatment of the previous zone begins. At least two of the successively treated zones may be adjacent to the zone treated previously. The successive treatment of the zones proceeds in an outward, substantially spiral sequence from the first zone so that the treatment of the zones may move substantially spirally outwards towards a boundary of the treatment area.

Generic Safety Requirements for Developing Safe Insulin Pump Software

PubMed Central

Zhang, Yi; Jetley, Raoul; Jones, Paul L; Ray, Arnab

2011-01-01

Background The authors previously introduced a highly abstract generic insulin infusion pump (GIIP) model that identified common features and hazards shared by most insulin pumps on the market. The aim of this article is to extend our previous work on the GIIP model by articulating safety requirements that address the identified GIIP hazards. These safety requirements can be validated by manufacturers, and may ultimately serve as a safety reference for insulin pump software. Together, these two publications can serve as a basis for discussing insulin pump safety in the diabetes community. Methods In our previous work, we established a generic insulin pump architecture that abstracts functions common to many insulin pumps currently on the market and near-future pump designs. We then carried out a preliminary hazard analysis based on this architecture that included consultations with many domain experts. Further consultation with domain experts resulted in the safety requirements used in the modeling work presented in this article. Results Generic safety requirements for the GIIP model are presented, as appropriate, in parameterized format to accommodate clinical practices or specific insulin pump criteria important to safe device performance. Conclusions We believe that there is considerable value in having the diabetes, academic, and manufacturing communities consider and discuss these generic safety requirements. We hope that the communities will extend and revise them, make them more representative and comprehensive, experiment with them, and use them as a means for assessing the safety of insulin pump software designs. One potential use of these requirements is to integrate them into model-based engineering (MBE) software development methods. We believe, based on our experiences, that implementing safety requirements using MBE methods holds promise in reducing design/implementation flaws in insulin pump development and evolutionary processes, therefore improving overall safety of insulin pump software. PMID:22226258

Reconstructing the history of water ice formation from HDO/H2O and D2O/HDO ratios in protostellar cores

NASA Astrophysics Data System (ADS)

Furuya, K.; van Dishoeck, E. F.; Aikawa, Y.

2016-02-01

Recent interferometer observations have found that the D2O/HDO abundance ratio is higher than that of HDO/H2O by about one order of magnitude in the vicinity of low-mass protostar NGC 1333-IRAS 2A, where water ice has sublimated. Previous laboratory and theoretical studies show that the D2O/HDO ice ratio should be lower than the HDO/H2O ice ratio, if HDO and D2O ices are formed simultaneously with H2O ice. In this work, we propose that the observed feature, D2O/HDO > HDO/H2O, is a natural consequence of chemical evolution in the early cold stages of low-mass star formation as follows: 1) majority of oxygen is locked up in water ice and other molecules in molecular clouds, where water deuteration is not efficient; and 2) water ice formation continues with much reduced efficiency in cold prestellar/protostellar cores, where deuteration processes are highly enhanced as a result of the drop of the ortho-para ratio of H2, the weaker UV radiation field, etc. Using a simple analytical model and gas-ice astrochemical simulations, which traces the evolution from the formation of molecular clouds to protostellar cores, we show that the proposed scenario can quantitatively explain the observed HDO/H2O and D2O/HDO ratios. We also find that the majority of HDO and D2O ices are likely formed in cold prestellar/protostellar cores rather than in molecular clouds, where the majority of H2O ice is formed. This work demonstrates the power of the combination of the HDO/H2O and D2O/HDO ratios as a tool to reveal the past history of water ice formation in the early cold stages of star formation, and when the enrichment of deuterium in the bulk of water occurred. Further observations are needed to explore if the relation, D2O/HDO > HDO/H2O, is common in low-mass protostellar sources.

Spatial-Sequential Working Memory in Younger and Older Adults: Age Predicts Backward Recall Performance within Both Age Groups

PubMed Central

Brown, Louise A.

2016-01-01

Working memory is vulnerable to age-related decline, but there is debate regarding the age-sensitivity of different forms of spatial-sequential working memory task, depending on their passive or active nature. The functional architecture of spatial working memory was therefore explored in younger (18–40 years) and older (64–85 years) adults, using passive and active recall tasks. Spatial working memory was assessed using a modified version of the Spatial Span subtest of the Wechsler Memory Scale – Third Edition (WMS-III; Wechsler, 1998). Across both age groups, the effects of interference (control, visual, or spatial), and recall type (forward and backward), were investigated. There was a clear effect of age group, with younger adults demonstrating a larger spatial working memory capacity than the older adults overall. There was also a specific effect of interference, with the spatial interference task (spatial tapping) reliably reducing performance relative to both the control and visual interference (dynamic visual noise) conditions in both age groups and both recall types. This suggests that younger and older adults have similar dependence upon active spatial rehearsal, and that both forward and backward recall require this processing capacity. Linear regression analyses were then carried out within each age group, to assess the predictors of performance in each recall format (forward and backward). Specifically the backward recall task was significantly predicted by age, within both the younger and older adult groups. This finding supports previous literature showing lifespan linear declines in spatial-sequential working memory, and in working memory tasks from other domains, but contrasts with previous evidence that backward spatial span is no more sensitive to aging than forward span. The study suggests that backward spatial span is indeed more processing-intensive than forward span, even when both tasks include a retention period, and that age predicts backward spatial span performance across the adult lifespan, within both younger and older adulthood. PMID:27757096

Spatial-Sequential Working Memory in Younger and Older Adults: Age Predicts Backward Recall Performance within Both Age Groups.

PubMed

Brown, Louise A

2016-01-01

Working memory is vulnerable to age-related decline, but there is debate regarding the age-sensitivity of different forms of spatial-sequential working memory task, depending on their passive or active nature. The functional architecture of spatial working memory was therefore explored in younger (18-40 years) and older (64-85 years) adults, using passive and active recall tasks. Spatial working memory was assessed using a modified version of the Spatial Span subtest of the Wechsler Memory Scale - Third Edition (WMS-III; Wechsler, 1998). Across both age groups, the effects of interference (control, visual, or spatial), and recall type (forward and backward), were investigated. There was a clear effect of age group, with younger adults demonstrating a larger spatial working memory capacity than the older adults overall. There was also a specific effect of interference, with the spatial interference task (spatial tapping) reliably reducing performance relative to both the control and visual interference (dynamic visual noise) conditions in both age groups and both recall types. This suggests that younger and older adults have similar dependence upon active spatial rehearsal, and that both forward and backward recall require this processing capacity. Linear regression analyses were then carried out within each age group, to assess the predictors of performance in each recall format (forward and backward). Specifically the backward recall task was significantly predicted by age, within both the younger and older adult groups. This finding supports previous literature showing lifespan linear declines in spatial-sequential working memory, and in working memory tasks from other domains, but contrasts with previous evidence that backward spatial span is no more sensitive to aging than forward span. The study suggests that backward spatial span is indeed more processing-intensive than forward span, even when both tasks include a retention period, and that age predicts backward spatial span performance across the adult lifespan, within both younger and older adulthood.

Heat stress enhances LTM formation in Lymnaea: role of HSPs and DNA methylation.

PubMed

Sunada, Hiroshi; Riaz, Hamza; de Freitas, Emily; Lukowiak, Kai; Swinton, Cayley; Swinton, Erin; Protheroe, Amy; Shymansky, Tamila; Komatsuzaki, Yoshimasa; Lukowiak, Ken

2016-05-01

Environmentally relevant stressors alter the memory-forming process in Lymnaea following operant conditioning of aerial respiration. One such stressor is heat. Previously, we found that following a 1 h heat shock, long-term memory (LTM) formation was enhanced. We also had shown that the heat stressor activates at least two heat shock proteins (HSPs): HSP40 and HSP70. Here, we tested two hypotheses: (1) the production of HSPs is necessary for enhanced LTM formation; and (2) blocking DNA methylation prevents the heat stressor-induced enhancement of LTM formation. We show here that the enhancing effect of the heat stressor on LTM formation occurs even if snails experienced the stressor 3 days previously. We further show that a flavonoid, quercetin, which inhibits HSP activation, blocks the enhancing effect of the heat stressor on LTM formation. Finally, we show that injection of a DNA methylation blocker, 5-AZA, before snails experience the heat stressor prevents enhancement of memory formation. © 2016. Published by The Company of Biologists Ltd.

Computational Investigation of Amine–Oxygen Exciplex Formation

PubMed Central

Haupert, Levi M.; Simpson, Garth J.; Slipchenko, Lyudmila V.

2012-01-01

It has been suggested that fluorescence from amine-containing dendrimer compounds could be the result of a charge transfer between amine groups and molecular oxygen [Chu, C.-C.; Imae, T. Macromol. Rapid Commun. 2009, 30, 89.]. In this paper we employ equation-of-motion coupled cluster computational methods to study the electronic structure of an ammonia–oxygen model complex to examine this possibility. The results reveal several bound electronic states with charge transfer character with emission energies generally consistent with previous observations. However, further work involving confinement, solvent, and amine structure effects will be necessary for more rigorous examination of the charge transfer fluorescence hypothesis. PMID:21812447

Oxidized forms of polyene antibiotic amphotericin B

NASA Astrophysics Data System (ADS)

Gagoś, Mariusz; Czernel, Grzegorz

2014-04-01

Amphotericin B (AmB) is one of the most important drug for the medical treatment of internal fungal infections. In this work we study electronic absorption and fluorescence properties of AmB in aqueous solution upon adding strong oxidizing agent. Particularly, we focus on the origin of the emission band ˜470 nm, which has been previously assigned to either formation of AmB dimers or to tetraene and pentaenes impurities. We find clear correlation between appearance of this band and oxidation of AmB, therefore, we conclude that the emission with maximum ˜470 nm is mainly related to the oxidation of AmB chromophore.

Importance of tie strengths in the prisoner's dilemma game on social networks

NASA Astrophysics Data System (ADS)

Xu, Bo; Liu, Lu; You, Weijia

2011-06-01

Though numerous researches have shown that tie strengths play a key role in the formation of collective behavior in social networks, little work has been done to explore their impact on the outcome of evolutionary games. In this Letter, we studied the effect of tie strength in the dynamics of evolutionary prisoner's dilemma games by using online social network datasets. The results show that the fraction of cooperators has a non-trivial dependence on tie strength. Weak ties, just like previous researches on epidemics and information diffusion have shown, play a key role by the maintenance of cooperators in evolutionary prisoner's dilemma games.

Software engineering and data management for automated payload experiment tool

NASA Technical Reports Server (NTRS)

Maddux, Gary A.; Provancha, Anna; Chattam, David

1994-01-01

The Microgravity Projects Office identified a need to develop a software package that will lead experiment developers through the development planning process, obtain necessary information, establish an electronic data exchange avenue, and allow easier manipulation/reformatting of the collected information. An MS-DOS compatible software package called the Automated Payload Experiment Tool (APET) has been developed and delivered. The objective of this task is to expand on the results of the APET work previously performed by University of Alabama in Huntsville (UAH) and provide versions of the software in a Macintosh and Windows compatible format. Appendix 1 science requirements document (SRD) Users Manual is attached.

X-Ray Computed Tomography of Tranquility Base Moon Rock

NASA Technical Reports Server (NTRS)

Jones, Justin S.; Garvin, Jim; Viens, Mike; Kent, Ryan; Munoz, Bruno

2016-01-01

X-ray Computed Tomography (CT) was used for the first time on the Apollo 11 Lunar Sample number 10057.30, which had been previously maintained by the White House, then transferred back to NASA under the care of Goddard Space Flight Center. Results from this analysis show detailed images of the internal structure of the moon rock, including vesicles (pores), crystal needles, and crystal bundles. These crystals, possibly the common mineral ilmenite, are found in abundance and with random orientation. Future work, in particular a greater understanding of these crystals and their formation, may lead to a more in-depth understanding of the lunar surface evolution and mineral content.

A novel application of the MIRC repository in medical education.

PubMed

Roth, Christopher J; Weadock, William J; Dipietro, Michael A

2005-06-01

Medical students on the radiology elective in our institution create electronic presentations to present to each other as part of the requirements for the rotation. Access was given to previous students' presentations via the web-based system, Medical Imaging Resource Center (MIRC) project, created and supported by the Radiological Society of North America (RSNA). RadPix Power 2 MIRC (Weadock Software, LLC, Ann Arbor, MI) software converted the Microsoft PowerPoint (Redmond, WA) presentations to a MIRC-compatible format. The textual information on each slide is searchable across the entire MIRC database. Future students will be able to benefit from the work of their predecessors.

Different Epidermal Growth Factor (EGF) Receptor Ligands Show Distinct Kinetics and Biased or Partial Agonism for Homodimer and Heterodimer Formation*

PubMed Central

Macdonald-Obermann, Jennifer L.; Pike, Linda J.

2014-01-01

The EGF receptor has seven different cognate ligands. Previous work has shown that these different ligands are capable of inducing different biological effects, even in the same cell. To begin to understand the molecular basis for this variation, we used luciferase fragment complementation to measure ligand-induced dimer formation and radioligand binding to study the effect of the ligands on subunit-subunit interactions in EGF receptor (EGFR) homodimers and EGFR/ErbB2 heterodimers. In luciferase fragment complementation imaging studies, amphiregulin (AREG) functioned as a partial agonist, inducing only about half as much total dimerization as the other three ligands. However, unlike the other ligands, AREG showed biphasic kinetics for dimer formation, suggesting that its path for EGF receptor activation involves binding to both monomers and preformed dimers. EGF, TGFα, and betacellulin (BTC) appear to mainly stimulate receptor activation through binding to and dimerization of receptor monomers. In radioligand binding assays, EGF and TGFα exhibited increased affinity for EGFR/ErbB2 heterodimers compared with EGFR homodimers. By contrast, BTC and AREG showed a similar affinity for both dimers. Thus, EGF and TGFα are biased agonists, whereas BTC and AREG are balanced agonists with respect to selectivity of dimer formation. These data suggest that the differences in biological response to different EGF receptor ligands may result from partial agonism for dimer formation, differences in the kinetic pathway utilized to generate activated receptor dimers, and biases in the formation of heterodimers versus homodimers. PMID:25086039

Evolving ONe WD+He star systems to intermediate-mass binary pulsars

NASA Astrophysics Data System (ADS)

Liu, D.; Wang, B.; Chen, W.; Zuo, Z.; Han, Z.

2018-06-01

It has been suggested that accretion-induced collapse (AIC) is a non-negligible path for the formation of the observed neutron stars (NSs). An ONe white dwarf (WD) that accretes material from a He star may experience AIC process and eventually produce intermediate-mass binary pulsars (IMBPs), named as the ONe WD+He star scenario. Note that previous studies can only account for part of the observed IMBPs with short orbital periods. In this work, we investigate the evolution of about 900 ONe WD+He star binaries to explore the distribution of IMBPs. We found that the ONe WD+He star scenario could form IMBPs including pulsars with 5-340 ms spin periods and 0.75-1.38 M_{⊙} WD companions, in which the orbital periods range from 0.04 to 900 d. Compared with the 20 observed IMBPs, this scenario can cover the parameters of 13 sources in the final orbital period-WD mass plane and the Corbet diagram, most of which have short orbital periods. We found that the ONe WD+He star scenario can explain almost all the observed IMBPs with short orbital periods. This work can well match the observed parameters of PSR J1802-2124 (one of the two precisely observed IMBPs), providing a possible evolutional path for its formation. We also speculate that the compact companion of HD 49798 (a hydrogen depleted sdO6 star) may be not a NS based on this work.

When feedback fails: the scaling and saturation of star formation efficiency

NASA Astrophysics Data System (ADS)

Grudić, Michael Y.; Hopkins, Philip F.; Faucher-Giguère, Claude-André; Quataert, Eliot; Murray, Norman; Kereš, Dušan

2018-04-01

We present a suite of 3D multiphysics MHD simulations following star formation in isolated turbulent molecular gas discs ranging from 5 to 500 parsecs in radius. These simulations are designed to survey the range of surface densities between those typical of Milky Way giant molecular clouds (GMCs) ({˜ } 10^2 {M_{\\odot } pc^{-2}}) and extreme ultraluminous infrared galaxy environments ({˜ } 10^4 {M_{\\odot } pc^{-2}}) so as to map out the scaling of the cloud-scale star formation efficiency (SFE) between these two regimes. The simulations include prescriptions for supernova, stellar wind, and radiative feedback, which we find to be essential in determining both the instantaneous per-freefall (ɛff) and integrated (ɛint) star formation efficiencies. In all simulations, the gas discs form stars until a critical stellar surface density has been reached and the remaining gas is blown out by stellar feedback. We find that surface density is a good predictor of ɛint, as suggested by analytic force balance arguments from previous works. SFE eventually saturates to ˜1 at high surface density. We also find a proportional relationship between ɛff and ɛint, implying that star formation is feedback-moderated even over very short time-scales in isolated clouds. These results have implications for star formation in galactic discs, the nature and fate of nuclear starbursts, and the formation of bound star clusters. The scaling of ɛff with surface density is not consistent with the notion that ɛff is always ˜ 1 per cent on the scale of GMCs, but our predictions recover the ˜ 1 per cent value for GMC parameters similar to those found in spiral galaxies, including our own.

Impact of Type III Secretion Effectors and of Phenoxyacetamide Inhibitors of Type III Secretion on Abscess Formation in a Mouse Model of Pseudomonas aeruginosa Infection

PubMed Central

Berube, Bryan J.; Murphy, Katherine R.; Torhan, Matthew C.; Bowlin, Nicholas O.; Williams, John D.; Bowlin, Terry L.; Moir, Donald T.

2017-01-01

ABSTRACT Pseudomonas aeruginosa is a leading cause of intra-abdominal infections, wound infections, and community-acquired folliculitis, each of which may involve macro- or microabscess formation. The rising incidence of multidrug resistance among P. aeruginosa isolates has increased both the economic burden and the morbidity and mortality associated with P. aeruginosa disease and necessitates a search for novel therapeutics. Previous work from our group detailed novel phenoxyacetamide inhibitors that block type III secretion and injection into host cells in vitro. In this study, we used a mouse model of P. aeruginosa abscess formation to test the in vivo efficacy of these compounds against the P. aeruginosa type III secretion system (T3SS). Bacteria used the T3SS to intoxicate infiltrating neutrophils to establish abscesses. Despite this antagonism, sufficient numbers of functioning neutrophils remained for proper containment of the abscesses, as neutrophil depletion resulted in an increased abscess size, the formation of dermonecrotic lesions on the skin, and the dissemination of P. aeruginosa to internal organs. Consistent with the specificity of the T3SS-neutrophil interaction, P. aeruginosa bacteria lacking a functional T3SS were fully capable of causing abscesses in a neutropenic host. Phenoxyacetamide inhibitors attenuated abscess formation and aided in the immune clearance of the bacteria. Finally, a P. aeruginosa strain resistant to the phenoxyacetamide compound was fully capable of causing abscess formation even in the presence of the T3SS inhibitors. Together, our results further define the role of type III secretion in murine abscess formation and demonstrate the in vivo efficacy of phenoxyacetamide inhibitors in P. aeruginosa infection. PMID:28807906

Gold particle formation via photoenhanced deposition on lithium niobate

NASA Astrophysics Data System (ADS)

Zaniewski, A. M.; Meeks, V.; Nemanich, R. J.

2017-05-01

In this work, we report on a technique to reduce gold chloride into sub-micron particles and nanoparticles. We use photoelectron transfer from periodically polarized lithium niobate (PPLN) illuminated with above band gap light to drive the surface reactions required for the reduction and particle formation. The particle sizes and distributions on the PPLN surface are sensitive to the solution concentration, with inhibited nucleation and large particles (>150 nm) for both low (2E-8M to 9E-7M) and high (1E-5M to 1E-3M) concentrations of gold chloride. At midrange values of the concentration, nucleation is more frequent, resulting in smaller sized particles (<150 nm). We compare the deposition process to that for silver, which has been previously studied. We find that the reduction of gold chloride into nanoparticles is inhibited compared to silver ion reduction, due to the multi-step reaction required for gold particle formation. This also has consequences for the resulting deposition patterns: while silver deposits into nanowires along boundaries between areas with opposite signed polarizations, such patterning of the deposition is not observed for gold, for a wide range of concentrations studied (2E-8 to 1E-3M).

Formation of electrophilic oxidation products from mitochondrial cardiolipin in vitro and in vivo in the context of apoptosis and atherosclerosis.

PubMed

Zhong, Huiqin; Lu, Jianhong; Xia, Lin; Zhu, Mingjiang; Yin, Huiyong

2014-01-01

Emerging evidence indicates that mitochondrial cardiolipins (CL) are prone to free radical oxidation and this process appears to be intimately associated with multiple biological functions of mitochondria. Our previous work demonstrated that a significant amount of potent lipid electrophiles including 4-hydroxy-nonenal (4-HNE) was generated from CL oxidation through a novel chemical mechanism. Here we provide further evidence that a characteristic class of CL oxidation products, epoxyalcohol-aldehyde-CL (EAA-CL), is formed through this novel mechanism in isolated mice liver mitochondria when treated with the pro-apoptotic protein t-Bid to induce cyt c release. Generation of these oxidation products are dose-dependently attenuated by a peroxidase inhibitor acetaminophen (ApAP). Using a mouse model of atherosclerosis, we detected significant amount of these CL oxidation products in liver tissue of low density lipoprotein receptor knockout (LDLR -/-) mice after Western diet feeding. Our studies highlight the importance of lipid electrophiles formation from CL oxidation in the settings of apoptosis and atherosclerosis as inhibition of CL oxidation and lipid electrophiles formation may have potential therapeutic value in diseases linked to oxidant stress and mitochondrial dysfunctions.

Theoretical studies on a new furazan compound bis[4-nitramino-furazanyl-3-azoxy]azofurazan (ADNAAF).

PubMed

Zheng, Chunmei; Chu, Yuting; Xu, Liwen; Wang, Fengyun; Lei, Wu; Xia, Mingzhu; Gong, Xuedong

2016-06-01

Bis[4-nitraminofurazanyl-3-azoxy]azofurazan (ADNAAF), synthesized in our previous work [1], contains four furazan units connected to the linkage of the azo-group and azoxy-group. For further research, some theoretical characters were studied by the density functional theoretical (DFT) method. The optimized structures and the energy gaps between the HOMO and LUMO were studied at the B3LYP/6-311++G** level. The isodesmic reaction method was used for estimating the enthalpy of formation. The detonation performances were estimated with Kamlet-Jacobs equations based on the predicted density and enthalpy of formation in the solid state. ADAAF was also calculated by the same method for comparison. It was found that the nitramino group of ADNAAF can elongate the length of adjacent C-N bonds than the amino group of ADAAF. The gas-phase and solid-phase enthalpies of formation of ADNAAF are larger than those of ADAAF. The detonation performances of ADNAAF are better than ADAAF and RDX, and similar to HMX. The trigger bond of ADNAAF is the N-N bonds in the nitramino groups, and the nitramino group is more active than the amino group (-NH2).

The role of non-ionizing radiation pressure in star formation: the stability of cores and filaments

NASA Astrophysics Data System (ADS)

Seo, Young Min; Youdin, Andrew N.

2016-09-01

Stars form when filaments and dense cores in molecular clouds fragment and collapse due to self-gravity. In the most basic analyses of gravitational stability, the competition between self-gravity and thermal pressure sets the critical (I.e. maximum stable) mass of spheres and the critical line density of cylinders. Previous work has considered additional support from magnetic fields and turbulence. Here, we consider the effects of non-ionizing radiation, specifically the inward radiation pressure force that acts on dense structures embedded in an isotropic radiation field. Using hydrostatic, isothermal models, we find that irradiation lowers the critical mass and line density for gravitational collapse, and can thus act as a trigger for star formation. For structures with moderate central densities, ˜103 cm-3, the interstellar radiation field in the Solar vicinity has an order unity effect on stability thresholds. For more evolved objects with higher central densities, a significant lowering of stability thresholds requires stronger irradiation, as can be found closer to the Galactic centre or near stellar associations. Even when strong sources of ionizing radiation are absent or extincted, our study shows that interstellar irradiation can significantly influence the star formation process.

Energetics of the formation of Cu-Ag core–shell nanoparticles

DOE PAGES

Chandross, Michael

2014-10-06

Our work presents molecular dynamics and Monte Carlo simulations aimed at developing an understanding of the formation of core–shell Cu-Ag nanoparticles. The effects of surface and interfacial energies were considered and used to form a phenomenological model that calculates the energy gained upon the formation of a core–shell structure from two previously distinct, non-interacting nanoparticles. In most cases, the core–shell structure was found to be energetically favored. Specifically, the difference in energy as a function of the radii of the individual Cu and Ag particles was examined, with the assumption that a core–shell structure forms. In general, it was foundmore » that the energetic gain from forming such a structure increased with increasing size of the initial Ag particle. This result was interpreted as a result of the reduction in surface energy. Moreover, for two separate particles, both Cu and Ag contribute to the surface energy; however, for a core–shell structure, the only contribution to the surface energy is from the Ag shell and the Cu contribution is changed to a Cu–Ag interfacial energy, which is always smaller.« less

Effects of a Single Water Molecule on the Reaction Barrier of Interstellar CO2 Formation Reaction.

PubMed

Tachikawa, Hiroto; Kawabata, Hiroshi

2016-08-25

The mechanism by which CO2 is formed in the interstellar space remains a mystery. The most likely reaction is collision between CO and OH; however, previous theoretical works have shown that the activation barrier for CO2 formation is high enough to prevent the reaction at the low thermal conditions of space (∼10 K). The effects of single water molecule on the reaction barrier of CO2 formation from reaction between CO and OH have been investigated here by means of ab initio calculation. The barrier height along the lowest-energy pathway in the reaction between CO and OH in the absence of the H2O molecule was calculated to be 2.3 kcal/mol when CCSD(T) energy corrections are combined with the MP2 basis set limit. In the case of the hydrated (H2O-CO-OH) system, the inclusion of a single H2O molecule into the system significantly decreased the barrier height to 0.2 kcal/mol. This suggests that CO2 can be formed when CO and OH react in the presence of H2O, even under thermal conditions as low as 10 K.

Forming the wide asynchronous binary asteroid population

NASA Astrophysics Data System (ADS)

Jacobson, S.; Scheeres, D.; McMahon, J.

2014-07-01

We propose and analyze a new mechanism for the formation of the wide asynchronous binary population. These binary asteroids have wide semi-major axes relative to most near-Earth-asteroid and main-belt-asteroid systems as shown in the attached table. Confirmed members have rapidly rotating primaries and satellites that are not tidally locked. Previously suggested formation mechanisms from impact ejecta, from planetary flybys, and directly from rotational-fission events cannot satisfy all of the observations. The newly hypothesized mechanism works as follows: (1) these systems are formed from rotational fission, (2) their satellites are tidally locked, (3) their orbits are expanded by the binary Yarkovsky-O'Keefe-Radzievskii-Paddack (BYORP) effect, (4) their satellites desynchronize as a result of the adiabatic invariance between the libration of the secondary and the mutual orbit, and (5) the secondary avoids resynchronization because of the YORP effect. This seemingly complex chain of events is a natural pathway for binaries with satellites that have particular shapes, which define the BYORP effect torque that acts on the system. After detailing the theory, we analyze each of the wide-asynchronous-binary members and candidates to assess their most likely formation mechanism. Finally, we suggest possible future observations to check and constrain our hypothesis.

Improved TDEM formation using fused ladar/digital imagery from a low-cost small UAV

NASA Astrophysics Data System (ADS)

Khatiwada, Bikalpa; Budge, Scott E.

2017-05-01

Formation of a Textured Digital Elevation Model (TDEM) has been useful in many applications in the fields of agriculture, disaster response, terrain analysis and more. Use of a low-cost small UAV system with a texel camera (fused lidar/digital imagery) can significantly reduce the cost compared to conventional aircraft-based methods. This paper reports continued work on this problem reported in a previous paper by Bybee and Budge, and reports improvements in performance. A UAV fitted with a texel camera is flown at a fixed height above the terrain and swaths of texel image data of the terrain below is taken continuously. Each texel swath has one or more lines of lidar data surrounded by a narrow strip of EO data. Texel swaths are taken such that there is some overlap from one swath to its adjacent swath. The GPS/IMU fitted on the camera also give coarse knowledge of attitude and position. Using this coarse knowledge and the information from the texel image, the error in the camera position and attitude is reduced which helps in producing an accurate TDEM. This paper reports improvements in the original work by using multiple lines of lidar data per swath. The final results are shown and analyzed for numerical accuracy.

DOE Office of Scientific and Technical Information (OSTI.GOV)

Ren, Wei, E-mail: wei.ren@helsinki.fi; Avchaciov, Konstantin; Nordlund, Kai

Carbon nanotubes are of wide interest due to their excellent properties such as tensile strength and electrical and thermal conductivity, but are not, when placed alone on a substrate, well resistant to mechanical wear. Diamond-like carbon (DLC), on the other hand, is widely used in applications due to its very good wear resistance. Combining the two materials could provide a very durable pure carbon nanomaterial enabling to benefit from the best properties of both carbon allotropes. However, the synthesis of high-quality diamond-like carbon uses energetic plasmas, which can damage the nanotubes. From previous works it is neither clear whether themore » quality of the tubes remains good after DLC deposition, nor whether the DLC above the tubes retains the high sp{sup 3} bonding fraction. In this work, we use experiments and classical molecular dynamics simulations to study the mechanisms of DLC formation on various carbon nanotube compositions. The results show that high-sp{sup 3}-content DLC can be formed provided the deposition conditions allow for sidewards pressure to form from a substrate close beneath the tubes. Under optimal DLC formation energies of around 40–70 eV, the top two nanotube atom layers are fully destroyed by the plasma deposition, but layers below this can retain their structural integrity.« less

Understanding protein lids: kinetic analysis of active hinge mutants in triosephosphate isomerase.

PubMed

Sun, J; Sampson, N S

1999-08-31

In previous work we tested what three amino acid sequences could serve as a protein hinge in triosephosphate isomerase [Sun, J., and Sampson, N. S. (1998) Protein Sci. 7, 1495-1505]. We generated a genetic library encoding all 8000 possible 3 amino acid combinations at the C-terminal hinge and selected for those combinations of amino acids that formed active mutants. These mutants were classified into six phylogenetic families. Two families resembled wild-type hinges, and four families represented new types of hinges. In this work, the kinetic characteristics and thermal stabilities of mutants representing each of these families were determined in order to understand what properties make an efficient protein hinge, and why all of the families are not observed in nature. From a steady-state kinetic analysis of our mutants, it is clear that the partitioning between protonation of intermediate to form product and intermediate release from the enzyme surface to form methylglyoxal (a decomposition product) is not affected. The two most impaired mutants undergo a change in rate-limiting step from enediol formation to dihydroxyacetone phosphate binding. Thus, it appears that k(cat)/K(m)'s are reduced relative to wild type as a result of slower Michaelis complex formation and dissociation, rather than increased loop opening speed.

Effects of secular evolution on the star formation history of galaxies

NASA Astrophysics Data System (ADS)

Lorenzo, M. Fernández; Sulentic, J.; Verdes-Montenegro, L.; Argudo-Fernández, M.; Ruiz, J. E.; Sabater, J.; Sánchez-Expósito, S.

2015-03-01

We report the study performed as part of the AMIGA (Analysis of the interstellar Medium of Isolated GAlaxies; http://www.amiga.iaa.es) project, focused on the SDSS (g-r) colors of the sample. Assuming that color is an indicator of star formation history, this work better records the signature of passive star formation via pure secular evolution. Median values for each morphological type in AMIGA were compared with equivalent measures for galaxies in denser environments. We found a tendency for AMIGA spiral galaxies to be redder than galaxies in close pairs, but no clear difference when we compare with galaxies in other (e.g. group) environments. The (g-r) color of isolated galaxies presents a Gaussian distribution, as indicative of pure secular evolution, and a smaller median absolute deviation (almost half) compared to both wide and close pairs. This redder color and lower color dispersion of AMIGA spirals compared with close pairs is likely due to a more passive star formation in very isolated galaxies. In Fig. 1, we represent the size versus stellar mass for early and late-type galaxies of our sample, compared with the local relations of Shen et al. (2003). The late-type isolated galaxies are ~1.2 times larger or have less stellar mass than local spirals in other environments. The latter would be in agreement with the passive star formation found in the previous part. We acknowledge Grant AYA2011-30491-C02-01, P08-FQM-4205 and TIC-114.

Clumpy Disks as a Testbed for Feedback-regulated Galaxy Formation

NASA Astrophysics Data System (ADS)

Mayer, Lucio; Tamburello, Valentina; Lupi, Alessandro; Keller, Ben; Wadsley, James; Madau, Piero

2016-10-01

We study the dependence of fragmentation in massive gas-rich galaxy disks at z > 1 on stellar feedback schemes and hydrodynamical solvers, employing the GASOLINE2 SPH code and the lagrangian mesh-less code GIZMO in finite mass mode. Non-cosmological galaxy disk runs with the standard delayed-cooling blastwave feedback are compared with runs adopting a new superbubble feedback, which produces winds by modeling the detailed physics of supernova-driven bubbles and leads to efficient self-regulation of star formation. We find that, with blastwave feedback, massive star-forming clumps form in comparable number and with very similar masses in GASOLINE2 and GIZMO. Typical clump masses are in the range 107-108 M ⊙, lower than in most previous works, while giant clumps with masses above 109 M ⊙ are exceedingly rare. By contrast, superbubble feedback does not produce massive star-forming bound clumps as galaxies never undergo a phase of violent disk instability. In this scheme, only sporadic, unbound star-forming overdensities lasting a few tens of Myr can arise, triggered by non-linear perturbations from massive satellite companions. We conclude that there is severe tension between explaining massive star-forming clumps observed at z > 1 primarily as the result of disk fragmentation driven by gravitational instability and the prevailing view of feedback-regulated galaxy formation. The link between disk stability and star formation efficiency should thus be regarded as a key testing ground for galaxy formation theory.

Satellitesimal Formation via Collisional Dust Growth in Steady Circumplanetary Disks

NASA Astrophysics Data System (ADS)

Shibaike, Yuhito; Okuzumi, Satoshi; Sasaki, Takanori; Ida, Shigeru

2017-09-01

The icy satellites around Jupiter are considered to have formed in a circumplanetary disk. While previous models have focused on the formation of the satellites starting from satellitesimals, the question of how satellitesimals themselves form from smaller dust particles has not yet been addressed. In this work, we study the possibility that satellitesimals form in situ in a circumplanetary disk. We calculate the radial distribution of the surface density and representative size of icy dust particles that grow by colliding with each other and drift toward the central planet in a steady circumplanetary disk with a continuous supply of gas and dust from the parent protoplanetary disk. The radial drift barrier is overcome if the ratio of the dust-to-gas accretion rates onto the circumplanetary disk, {\\dot{M}}{{d}}/{\\dot{M}}{{g}}, is high and the strength of turbulence, α, is not too low. The collision velocity is lower than the critical velocity of fragmentation when α is low. Taken together, we find that the conditions for satellitesimal formation via dust coagulation are given by {\\dot{M}}{{d}}/{\\dot{M}}{{g}}≥slant 1 and {10}-4≤slant α < {10}-2. The former condition is generally difficult to achieve, suggesting that the in situ satellitesimal formation via particle sticking is viable only under extreme conditions. We also show that neither satellitesimal formation via the collisional growth of porous aggregates nor via streaming instability is viable as long as {\\dot{M}}{{d}}/{\\dot{M}}{{g}} is low.

Deprotonated Dicarboxylic Acid Homodimers: Hydrogen Bonds and Atmospheric Implications

DOE Office of Scientific and Technical Information (OSTI.GOV)

Hou, Gao-Lei; Valiev, Marat; Wang, Xue-Bin

Dicarboxylic acids represent an important class of water-soluble organic compounds found in the atmosphere. In this work we are studying properties of dicarboxylic acid homodimer complexes (HO 2(CH 2) nCO 2 -[HO 2(CH 2) nCO 2H], n = 0-12), as potentially important intermediates in aerosol formation processes. Our approach is based on experimental data from negative ion photoelectron spectra of the dimer complexes combined with updated measurements of the corresponding monomer species. These results are analyzed with quantum-mechanical calculations, which provide further information about equilibrium structures, thermochemical parameters associated with the complex formation, and evaporation rates. We find that uponmore » formation of the dimer complexes the electron binding energies increase by 1.3–1.7 eV (30.0–39.2 kcal/mol), indicating increased stability of the dimerized complexes. Calculations indicate that these dimer complexes are characterized by the presence of strong intermolecular hydrogen bonds with high binding energies and are thermodynamically favorable to form with low evaporation rates. Comparison with previously studied HSO 4 -[HO 2(CH 2) 2CO 2H] complex (J. Phys. Chem. Lett. 2013, 4, 779-785) shows that HO 2(CH 2) 2CO 2 -[HO 2(CH 2) 2CO 2H] has very similar thermochemical properties. These results imply that dicarboxylic acids not only can contribute to the heterogeneous complexes formation involving sulfuric acid and dicarboxylic acids, but also can promote the formation of homogenous complexes by involving dicarboxylic acids themselves.« less

Formative Assessment of Writing in English as a Foreign Language

ERIC Educational Resources Information Center

Burner, Tony

2016-01-01

Recognizing the importance of formative assessment, this mixed-methods study investigates how four teachers and 100 students respond to the new emphasis on formative assessment in English as a foreign language (EFL) writing classes in Norway. While previous studies have examined formative assessment in oral classroom interactions and focused on…

Identification of a novel Lymantria dispar nucleopolyhedrovirus mutant that exhibits abnormal polyhedron formation and virion occlusion

Treesearch

James M. Slavicek; Melissa J. Mercer; Dana Pohlman; Mary Ellen Kelly; David S. Bischoff

1998-01-01

In previous studies on the formation of Lymantria dispar nuclear polyhedrosis virus (LdMNPV) few polyhedra (FP) mutants, several polyhedron formation mutants (PFM) were identified that appeared to be unique. These viral mutants are being characterized to investigate the processes of polyhedron formation and virion occlusion. Ld

Influence of the order of reagent addition on NDMA formation during chloramination.

PubMed

Schreiber, I Marie; Mitch, William A

2005-05-15

The formation of the potent carcinogen, N-nitrosodimethylamine (NDMA), during chlorine disinfection has caused significant concern among drinking water and wastewater recycling utilities practicing intentional or unintentional chloramination. Previous research modeled NDMA formation as arising from a reaction between monochloramine and organic nitrogen precursors, such as dimethylamine, via an unsymmetrical dimethylhydrazine (UDMH) intermediate. Contrary to the importance of monochloramine indicated by previous studies, hypochlorite formed an order of magnitude more NDMA than monochloramine when applied to a secondary municipal wastewater effluent containing excess ammonia. Experiments involving variation of the order that each reagent (i.e., hypochlorite, ammonium chloride, and dimethylamine) was added to solution suggest two factors that may be more important for NDMA formation than the presence of monochloramine: (i) the chlorination state of organic nitrogen precursors and (ii) the partial formation of dichloramine. Although dichloramine formation was most influenced by the pH conditions under which inorganic chloramine formation was performed, mixing effects related to the order of reagent addition may be important at full-scale plants. Chloramination strategies are suggested that may reduce NDMA formation by nearly an order of magnitude.

New Insights Into Valley Formation and Preservation: Geophysical Imaging of the Offshore Trinity River Paleovalley

NASA Astrophysics Data System (ADS)

Speed, C. M.; Swartz, J. M.; Gulick, S. P. S.; Goff, J.

2017-12-01

The Trinity River paleovalley is an offshore stratigraphic structure located on the inner continental shelf of the Gulf of Mexico offshore Galveston, Texas. Its formation is linked to the paleo-Trinity system as it existed across the continental shelf during the last glacial period. Newly acquired high-resolution geophysical data have imaged more complexity to the valley morphology and shelf stratigraphy than was previously captured. Significantly, the paleo-Trinity River valley appears to change in the degree of confinement and relief relative to the surrounding strata. Proximal to the modern shoreline, the interpreted time-transgressive erosive surface formed by the paleo-river system is broad and rugose with no single valley, but just 5 km farther offshore the system appears to become confined to a 10 km wide valley structure before again becoming unconfined once again 30 km offshore. Fluvial stratigraphy in this region has a similar degree of complexity in morphology and preservation. A dense geophysical survey of several hundred km is planned for Fall 2017, which will provide unprecedented imaging of the paleovalley morphology and associated stratigraphy. Our analysis leverages robust chirp processing techniques that allow for imaging of strata on the decimeter scale. We will integrate our geophysical results with a wide array of both newly collected and previously published sediment cores. This approach will allow us to address several key questions regarding incised valley formation and preservation on glacial-interglacial timescales including: to what extent do paleo-rivers remain confined within a single broad valley structure, what is the fluvial systems response to transgression, and what stratigraphy is created and preserved at the transition from fluvial to estuarine environments? Our work illustrates that traditional models of incised valley formation and subsequent infilling potentially fail to capture the full breadth of dynamics of past river systems.

Proton affinity and enthalpy of formation of formaldehyde

NASA Astrophysics Data System (ADS)

Czakó, Gábor; Nagy, Balázs; Tasi, Gyula; Somogyi, Árpád; Šimunek, Ján; Noga, Jozef; Braams, Bastiaan J.; Bowman, Joel M.; Császár; , Attila G.

The proton affinity and the enthalpy of formation of the prototypical carbonyl, formaldehyde, have been determined by the first-principles composite focal-point analysis (FPA) approach. The electronic structure computations employed the all-electron coupled-cluster method with up to single, double, triple, quadruple, and even pentuple excitations. In these computations the aug-cc-p(C)VXZ [X = 2(D), 3(T), 4(Q), 5, and 6] correlation-consistent Gaussian basis sets for C and O were used in conjunction with the corresponding aug-cc-pVXZ (X = 2-6) sets for H. The basis set limit values have been confirmed via explicitly correlated computations. Our FPA study supersedes previous computational work for the proton affinity and to some extent the enthalpy of formation of formaldehyde by accounting for (a) electron correlation beyond the "gold standard" CCSD(T) level; (b) the non-additivity of core electron correlation effects; (c) scalar relativity; (d) diagonal Born-Oppenheimer corrections computed at a correlated level; (e) anharmonicity of zero-point vibrational energies, based on global potential energy surfaces and variational vibrational computations; and (f) thermal corrections to enthalpies by direct summation over rovibrational energy levels. Our final proton affinities at 298.15 (0.0) K are ΔpaHo (H2CO) = 711.02 (704.98) ± 0.39 kJ mol-1. Our final enthalpies of formation at 298.15 (0.0) K are ΔfHo (H2CO) = -109.23 (-105.42) ± 0.33 kJ mol-1. The latter values are based on the enthalpy of the H2 + CO → H2CO reaction but supported by two further reaction schemes, H2O + C → H2CO and 2H + C + O → H2CO. These values, especially ΔpaHo (H2CO), have better accuracy and considerably lower uncertainty than the best previous recommendations and thus should be employed in future studies.

An Analytical Solution and Numerical Modeling Study of Gas Hydrate Saturation Effects on Porosity and Permeability of Porous Media

NASA Astrophysics Data System (ADS)

Zerpa, L.; Gao, F.; Wang, S.

2017-12-01

There are two major types of natural gas hydrate distributions in porous media: pore filling and contact cementing. The difference between these two distribution types is related to hydrate nucleation and growth processes. In the pore filling distribution, hydrate nucleates from a gas-dissolved aqueous phase at the grain boundary and grows away from grain contacts and surfaces into the pore space. In the contact cementing distribution, hydrate nucleates and grows at the gas-water interface and at intergranular contacts. Previous attempts to correlate changes on porosity and permeability during hydrate formation/dissociation were based on the length difference between the pore body and pore throat, and only considered contact cementing hydrate distribution. This work consists of a study of mathematical models of permeability and porosity as a function of gas hydrate saturation during formation and dissociation of gas hydrates in porous media. In this work, first we derive the permeability equation for the pore filling hydrate deposition as a function of hydrate saturation. Then, a more comprehensive model considering both types of gas hydrate deposition is developed to represent changes in permeability and porosity during hydrate formation and dissociation. This resulted in a model that combines pore filling and contact cementing deposition types in the same reservoir. Finally, the TOUGH+Hydrate numerical reservoir simulator was modified to include these models to analyze the response of production and saturation during a depressurization process, considering different combinations of pore filling and contact cementing hydrate distributions. The empirical exponent used in the permeability adjustment factor model influences both production profile and saturation results. This empirical factor describes the permeability dependence to changes in porosity caused by solid phase formation in the porous medium. The use of the permeability exponent decreases the permeability of the system for a given hydrate saturation, which affects the hydraulic performance of the system. However, from published experimental work, there is only a rough estimation of this permeability exponent. This factor could be represented with an empirical equation if more laboratory and field data becomes available.

DETERMINATION OF APPARENT QUANTUM YIELD SPECTRA FOR THE FORMATION OF BIOLOGICALLY LABILE PHOTOPRODUCTS

EPA Science Inventory

Quantum yield spectra for the photochemical formation of biologically labile photoproducts from dissolved organic matter (DOM) have not been available previously, although they would greatly facilitate attempts to model photoproduct formation rates across latitudinal, seasonal, a...

The effect of volume exclusion on the formation of DNA minicircle networks: implications to kinetoplast DNA

NASA Astrophysics Data System (ADS)

Diao, Y.; Hinson, K.; Sun, Y.; Arsuaga, J.

2015-10-01

Kinetoplast DNA (kDNA) is the mitochondrial of DNA of disease causing organisms such as Trypanosoma Brucei (T. Brucei) and Trypanosoma Cruzi (T. Cruzi). In most organisms, KDNA is made of thousands of small circular DNA molecules that are highly condensed and topologically linked forming a gigantic planar network. In our previous work we have developed mathematical and computational models to test the confinement hypothesis, that is that the formation of kDNA minicircle networks is a product of the high DNA condensation achieved in the mitochondrion of these organisms. In these studies we studied three parameters that characterize the growth of the network topology upon confinement: the critical percolation density, the mean saturation density and the mean valence (i.e. the number of mini circles topologically linked to any chosen minicircle). Experimental results on insect-infecting organisms showed that the mean valence is equal to three, forming a structure similar to those found in medieval chain-mails. These same studies hypothesized that this value of the mean valence was driven by the DNA excluded volume. Here we extend our previous work on kDNA by characterizing the effects of DNA excluded volume on the three descriptive parameters. Using computer simulations of polymer swelling we found that (1) in agreement with previous studies the linking probability of two minicircles does not decrease linearly with the distance between the two minicircles, (2) the mean valence grows linearly with the density of minicircles and decreases with the thickness of the excluded volume, (3) the critical percolation and mean saturation densities grow linearly with the thickness of the excluded volume. Our results therefore suggest that the swelling of the DNA molecule, due to electrostatic interactions, has relatively mild implications on the overall topology of the network. Our results also validate our topological descriptors since they appear to reflect the changes in the physical properties of the polymeric chains and at the same time remain faithful to their description of kDNA.

Using Mauna Loa Atmospheric CO2 Data in Large General Education Geoscience Courses

NASA Astrophysics Data System (ADS)

Richardson, R. M.; Kapp, J. L.

2007-12-01

We have been using the Mauna Loa atmospheric CO2 dataset (http://scrippsco2.ucsd.edu/data/in_situ_co2/monthly_mlo.csv) in a large (up to 300) General Education Geoscience course, primarily in small breakout groups (30 students). The exercise is designed to address quantitative literacy including percentages, slopes and linear trends, issues of data completeness and bias, quality of extrapolations, as well as implications for climate change. We are significantly revising the course, which serves 600 students a semester, with help from a curriculum grant. A major goal is to improve student learning by incorporating inquiry based activities in the large lecture setting. Lectures now incorporate several activities throughout a given class period, in which students are asked to use critical thinking skills such as interpreting patterns in data and graphs, analyzing a scientific hypothesis for its coherence with the scientific method, and answering higher order synthesis questions in both verbal and written form. This differs from our past format where class periods were dominated by lecture, with a single short activity done individually about every other lecture. To test the effectiveness of the new course format we will give students the same atmospheric CO2 exercise in the lecture setting that they were given previously in breakout groups. Students will work in small groups in lecture after receiving a short introduction to the exercise by the instructor. They will plot CO2 concentrations, make extrapolations, and interpret patterns in the data. We will compare scores on the exercise with previous semesters. We expect that students will do better having had more experience with interpreting scientific data and practicing higher order thinking skills. We also expect working in small groups will foster better learning through peer teaching and discussion. We will incorporate responses from students who took part in the exercises from current and previous semesters. We administer a greenhouse effect concept inventory both before and after the CO2 exercise and other in-class greenhouse gas activities, and will present those results as well.

Age differences and format effects in working memory.

PubMed

Foos, Paul W; Goolkasian, Paula

2010-07-01

Format effects refer to lower recall of printed words from working memory when compared to spoken words or pictures. These effects have been attributed to an attenuation of attention to printed words. The present experiment compares younger and older adults' recall of three or six items presented as pictures, spoken words, printed words, and alternating case WoRdS. The latter stimuli have been shown to increase attention to printed words and, thus, reduce format effects. The question of interest was whether these stimuli would also reduce format effects for older adults whose working memory capacity has fewer attentional resources to allocate. Results showed that older adults performed as well as younger adults with three items but less well with six and that format effects were reduced for both age groups, but more for young, when alternating case words were used. Other findings regarding executive control of working memory are discussed. The obtained differences support models of reduced capacity in older adult working memory.

Chemotaxis in P. Aeruginosa Biofilm Formation

NASA Astrophysics Data System (ADS)

Bienvenu, Samuel; Strain, Shinji; Thatcher, Travis; Gordon, Vernita

2010-10-01

Pseudomonas biofilms form infections in the lungs of Cystic Fibrosis (CF) patients that damage lung tissue and lead to death. Previous work shows chemotaxis is important for Pseudomonas in CF lungs. The work studied swimming bacteria at high concentrations. In contrast, medically relevant biofilms initiate from sparse populations of surface-bound bacteria. The recent development of software techniques for automated, high-throughput bacteria tracking leaves us well-poised to quantitatively study these chemotactic conditions. We will develop experimental systems for such studies, focusing on L-Arginine (an amino acid), D-Galactose (a sugar present in lungs), and succinate and glucose (carbon sources for bacteria). This suite of chemoattractants will allow us to study how chemoattractant characteristics--size and diffusion behavior--change bacterial response; the interaction of competing chemoattractants; and, differences in bacterial behaviors, like motility modes, in response to different types of chemoattractions and varying neighbor cell density.

Higher Order Chemistry Models in the CFD Simulation of Laser-Ablated Carbon Plumes

NASA Technical Reports Server (NTRS)

Greendyke, R. B.; Creel, J. R.; Payne, B. T.; Scott, C. D.

2005-01-01

Production of single-walled carbon nanotubes (SWNT) has taken place for a number of years and by a variety of methods such as laser ablation, chemical vapor deposition, and arc-jet ablation. Yet, little is actually understood about the exact chemical kinetics and processes that occur in SWNT formation. In recent time, NASA Johnson Space Center has devoted a considerable effort to the experimental evaluation of the laser ablation production process for SWNT originally developed at Rice University. To fully understand the nature of the laser ablation process it is necessary to understand the development of the carbon plume dynamics within the laser ablation oven. The present work is a continuation of previous studies into the efforts to model plume dynamics using computational fluid dynamics (CFD). The ultimate goal of the work is to improve understanding of the laser ablation process, and through that improved understanding, refine the laser ablation production of SWNT.

A Highly Resolved Large-Eddy Simulation of a Wind Turbine using an Actuator Line Model with Optimal Body Force Projection

DOE PAGES

Martinez-Tossas, Luis A.; Churchfield, Matthew J.; Meneveau, Charles

2016-10-03

When representing the blade aerodynamics with rotating actuator lines, the computed forces have to be projected back to the CFD flow field as a volumetric body force. That has been done in the past with a geometrically simple uniform three-dimensional Gaussian at each point along the blade. Here, we argue that the body force can be shaped in a way that better predicts the blade local flow field, the blade load distribution, and the formation of the tip/root vortices. In previous work, we have determined the optimal scales of circular and elliptical Gaussian kernels that best reproduce the local flowmore » field in two-dimensions. Lastly, in this work we extend the analysis and applications by considering the full three-dimensional blade to test our hypothesis in a highly resolved Large Eddy Simulation.« less

Update on Recovering Lead From Scrap Batteries

NASA Astrophysics Data System (ADS)

Cole, E. R.; Lee, A. Y.; Paulson, D. L.

1985-02-01

Previous work at the Bureau of Mines Rolla Research Center, U.S. Department of the Interior, resulted in successful development of a bench-scale, combination electrorefining-electrowinning method for recycling lead from scrap batteries by using waste fluosilicic acid (H2SiF6) as electrolyte.1,2 This paper describes larger scale experiments. Prior attempts to electrowin lead failed because large quantities of insoluble lead dioxide were deposited on the anodes at the expense of lead deposition on the cathodes. A major breakthrough was achieved with the discovery that lead dioxide formation at the anodes is prevented by adding a small amount of phosphorus to the electrolyte. The amount of PbO2 formed on the anodes during lead electrowinning was less than 1% of the total lead deposited on the cathodes. This work recently won the prestigious IR·100 award as one of the 100 most significant technological advances of 1984.

The impact of absorption coefficient on polarimetric determination of Berry phase based depth resolved characterization of biomedical scattering samples: a polarized Monte Carlo investigation

DOE Office of Scientific and Technical Information (OSTI.GOV)

Baba, Justin S; Koju, Vijay; John, Dwayne O

2016-01-01

The modulation of the state of polarization of photons due to scatter generates associated geometric phase that is being investigated as a means for decreasing the degree of uncertainty in back-projecting the paths traversed by photons detected in backscattered geometry. In our previous work, we established that polarimetrically detected Berry phase correlates with the mean photon penetration depth of the backscattered photons collected for image formation. In this work, we report on the impact of state-of-linear-polarization (SOLP) filtering on both the magnitude and population distributions of image forming detected photons as a function of the absorption coefficient of the scatteringmore » sample. The results, based on Berry phase tracking implemented Polarized Monte Carlo Code, indicate that sample absorption plays a significant role in the mean depth attained by the image forming backscattered detected photons.« less

A Highly Resolved Large-Eddy Simulation of a Wind Turbine using an Actuator Line Model with Optimal Body Force Projection

DOE Office of Scientific and Technical Information (OSTI.GOV)

Martinez-Tossas, Luis A.; Churchfield, Matthew J.; Meneveau, Charles

When representing the blade aerodynamics with rotating actuator lines, the computed forces have to be projected back to the CFD flow field as a volumetric body force. That has been done in the past with a geometrically simple uniform three-dimensional Gaussian at each point along the blade. Here, we argue that the body force can be shaped in a way that better predicts the blade local flow field, the blade load distribution, and the formation of the tip/root vortices. In previous work, we have determined the optimal scales of circular and elliptical Gaussian kernels that best reproduce the local flowmore » field in two-dimensions. Lastly, in this work we extend the analysis and applications by considering the full three-dimensional blade to test our hypothesis in a highly resolved Large Eddy Simulation.« less

DOE Office of Scientific and Technical Information (OSTI.GOV)

Halambage Upul Deepthike; Robin Tecon; Gerry van Kooten

In the wake of the 1989 Exxon Valdez oil spill, spatially and temporally spill-correlated biological effects consistent with polycyclic aromatic hydrocarbon (PAH) exposure were observed. Some works have proposed that confounding sources from local source rocks, prominently coals, are the provenance of the PAHs. Representative coal deposits along the southeast Alaskan coast (Kulthieth Formation) were sampled and fully characterized chemically and geologically. The coals have variable but high total organic carbon content, technically classifying as coals and coaly shale, and highly varying PAH contents. Even for coals with high PAH content (4000 ppm total PAHs), a PAH-sensitive bacterial biosensor demonstratesmore » nondetectable bioavailability as quantified, based on naphthalene as a test calibrant. These results are consistent with studies indicating that materials such as coals strongly diminish the bioavailability of hydrophobic organic compounds and support previous work suggesting that hydrocarbons associated with the regional background in northern Gulf of Alaska marine sediments are not appreciably bioavailable. 44 refs., 4 figs., 2 tabs.« less

Efficient n-type doping of zinc-blende III-V semiconductor nanowires

NASA Astrophysics Data System (ADS)

Besteiro, Lucas V.; Tortajada, Luis; Souto, J.; Gallego, L. J.; Chelikowsky, James R.; Alemany, M. M. G.

2014-03-01

We demonstrate that it is preferable to dope III-V semiconductor nanowires by n-type anion substitution as opposed to cation substitution. Specifically, we show the dopability of zinc-blende nanowires is more efficient when the dopants are placed at the anion site as quantified by formation energies and the stabilization of DX-like defect centers. The comparison with previous work on n - type III-V semiconductor nanocrystals also allows to determine the role of dimensionality and quantum confinement on doping characteristics of materials. Our results are based on first-principles calculations of InP nanowires by using the PARSEC code. Work supported by the Spanish MICINN (FIS2012-33126) and Xunta de Galicia (GPC2013-043) in conjunction with FEDER. JRC acknowledges support from DoE (DE-FG02-06ER46286 and DESC0008877). Computational support was provided in part by CESGA.

Overpressure and Fluid Diffusion Causing Non-hydrological Transient GNSS Displacements

NASA Astrophysics Data System (ADS)

Rossi, Giuliana; Fabris, Paolo; Zuliani, David

2017-11-01

In this work, global navigation satellite system (GNSS) observations from the northern tip of the Adria microplate are analysed to differentiate non-periodic (transient) tectonic signals from other deviations from the linear trends primarily due to hydrological loading effects. We tested a recently proposed hypothesis that a porosity wave generated by fault-valve mechanisms in a seismogenic fault in the Bovec basin (western Slovenia) propagated throughout the surrounding region. After excluding potential spatially correlated common-mode errors in the considered time series, we investigated the relationship between the GNSS observations and periodic hydrological loading variations. The tests demonstrated that subtracting the hydrological term was effective at the global scale and that the frequency band of the transient signal (1.5 < T < 3.5 years) was not correlated with hydrological effects at the local scale (within a few kilometres of the station). Next, the results of previous works are used to calculate the permeability values and pore-pressure state at the source of the transient signal. The permeability values for the four main rock formations in the region are consistent with independent observations for similar lithotypes. The ratio between the effective stress and lithostatic load for different vertical profiles in the Bovec area indicated a state of overpressure, with pore-pressure close to the value of the lithostatic load. Thus, our results help define a scenario in which the porosity wave could have originated. Indeed, the formation of the domains of interconnected fractures, such as during the formation of a porosity wave, increases the permeability values, thereby relieving overpressure and restoring a state of equilibrium.

Bering Sea Nd isotope records of North Pacific Intermediate Water circulation

NASA Astrophysics Data System (ADS)

Rabbat, C.; Knudson, K. P.; Goldstein, S. L.

2017-12-01

North Pacific Intermediate Water (NPIW) is the primary water mass associated with Pacific meridional overturning circulation. While the relationship between Atlantic meridional overturning circulation and climate has been extensively studied, a lack of suitable sediment cores has limited past investigations of North Pacific climate and NPIW variability. Integrated Ocean Drilling Program Site U1342 (818 m water depth) on Bower's Ridge in the Bering Sea is located at a sensitive depth for detecting changes in NPIW, and it is the only available sub-arctic North Pacific site that offers long, continuous core recovery, relatively high sedimentation rates, excellent foraminifera preservation, and a well-constrained age model over multiple glacial-interglacial cycles. Previous work at Site U1342 from Knudson and Ravelo (2015), using non-quantitative circulation proxies, provides evidence for enhanced NPIW formation during extreme glacials associated with the closure of the Bering Strait and suggest that NPIW was formed locally within the Bering Sea. Our work builds on the potential importance of these results and applies more robust and potentially quantitative circulation proxies to constrain NPIW variability. Here, we present new records of NPIW circulation from Site U1342 based on Nd isotope analyses on fish debris and Fe-Mn encrusted foraminifera, which serve as semi-quantitative "water mass tracers." Weak Bering Sea NPIW formation and ventilation are reflected by relatively lower eNd values indicative of open subarctic North Pacific waters, which are presently predominant, whereas enhanced Bering Sea NPIW formation and ventilation are be reflected by relatively higher eNd values due to the input of Nd from regional volcanic rocks.

Overpressure and Fluid Diffusion Causing Non-hydrological Transient GNSS Displacements

NASA Astrophysics Data System (ADS)

Rossi, Giuliana; Fabris, Paolo; Zuliani, David

2018-05-01

In this work, global navigation satellite system (GNSS) observations from the northern tip of the Adria microplate are analysed to differentiate non-periodic (transient) tectonic signals from other deviations from the linear trends primarily due to hydrological loading effects. We tested a recently proposed hypothesis that a porosity wave generated by fault-valve mechanisms in a seismogenic fault in the Bovec basin (western Slovenia) propagated throughout the surrounding region. After excluding potential spatially correlated common-mode errors in the considered time series, we investigated the relationship between the GNSS observations and periodic hydrological loading variations. The tests demonstrated that subtracting the hydrological term was effective at the global scale and that the frequency band of the transient signal (1.5 < T < 3.5 years) was not correlated with hydrological effects at the local scale (within a few kilometres of the station). Next, the results of previous works are used to calculate the permeability values and pore-pressure state at the source of the transient signal. The permeability values for the four main rock formations in the region are consistent with independent observations for similar lithotypes. The ratio between the effective stress and lithostatic load for different vertical profiles in the Bovec area indicated a state of overpressure, with pore-pressure close to the value of the lithostatic load. Thus, our results help define a scenario in which the porosity wave could have originated. Indeed, the formation of the domains of interconnected fractures, such as during the formation of a porosity wave, increases the permeability values, thereby relieving overpressure and restoring a state of equilibrium.

Visualization of extracellular matrix components within sectioned Salmonella biofilms on the surface of human gallstones.

PubMed

Marshall, Joanna M; Flechtner, Alan D; La Perle, Krista M; Gunn, John S

2014-01-01

Chronic carriage of Salmonella Typhi is mediated primarily through the formation of bacterial biofilms on the surface of cholesterol gallstones. Biofilms, by definition, involve the formation of a bacterial community encased within a protective macromolecular matrix. Previous work has demonstrated the composition of the biofilm matrix to be complex and highly variable in response to altered environmental conditions. Although known to play an important role in bacterial persistence in a variety of contexts, the Salmonella biofilm matrix remains largely uncharacterized under physiological conditions. Initial attempts to study matrix components and architecture of the biofilm matrix on gallstone surfaces were hindered by the auto-fluorescence of cholesterol. In this work we describe a method for sectioning and direct visualization of extracellular matrix components of the Salmonella biofilm on the surface of human cholesterol gallstones and provide a description of the major matrix components observed therein. Confocal micrographs revealed robust biofilm formation, characterized by abundant but highly heterogeneous expression of polysaccharides such as LPS, Vi and O-antigen capsule. CsgA was not observed in the biofilm matrix and flagellar expression was tightly restricted to the biofilm-cholesterol interface. Images also revealed the presence of preexisting Enterobacteriaceae encased within the structure of the gallstone. These results demonstrate the use and feasibility of this method while highlighting the importance of studying the native architecture of the gallstone biofilm. A better understanding of the contribution of individual matrix components to the overall biofilm structure will facilitate the development of more effective and specific methods to disrupt these bacterial communities.

Laboratory experiments of crater formation on ice-rock mixture targets

NASA Astrophysics Data System (ADS)

Hiraoka, K.; Arakawa, M.; Yoshikawa, K.; Nakamura, A. M.

Surfaces of ice-rock mixture are common among planetary bodies in outer solar system, such as the satellites of the giant planets, comet nuclei, and so on. In order to study the effect of the presence of volatiles in crater formation on these bodies, we performed impact experiments using a two-stage light-gas gun and a gas gun at Hokkaido University. The targets were ice-rock mixtures (diameter = 10 or 30cm, height = 5cm) with 0 wt.% to 50 wt.% rock. Projectiles were ice cylinders (diameter = 15mm, height = 10mm) or corn-shaped nylon ones and the impact velocities were varied from about 300m/s to 3500m/s. We will show an anti-correlation between the crater volume and the rock content, and will make a comparison with previous works (Lange and Ahrens 1982; Koschny and Grun 2001). Ejecta size and velocity measured on high-speed video images will be presented and will be discussed by a comparison with a spallation model (Melosh 1984).

Frog virus 3 ORF 53R, a putative myristoylated membrane protein, is essential for virus replication in vitro

DOE Office of Scientific and Technical Information (OSTI.GOV)

Whitley, Dexter S.; Yu, Kwang; Sample, Robert C.

2010-09-30

Although previous work identified 12 complementation groups with possible roles in virus assembly, currently only one frog virus 3 protein, the major capsid protein (MCP), has been linked with virion formation. To identify other proteins required for assembly, we used an antisense morpholino oligonucleotide to target 53R, a putative myristoylated membrane protein, and showed that treatment resulted in marked reductions in 53R levels and a 60% drop in virus titers. Immunofluorescence assays confirmed knock down and showed that 53R was found primarily within viral assembly sites, whereas transmission electron microscopy detected fewer mature virions and, in some cells, dense granularmore » bodies that may represent unencapsidated DNA-protein complexes. Treatment with a myristoylation inhibitor (2-hydroxymyristic acid) resulted in an 80% reduction in viral titers. Collectively, these data indicate that 53R is an essential viral protein that is required for replication in vitro and suggest it plays a critical role in virion formation.« less

Polarographic determination of lead hydroxide formation constants at low ionic strength

USGS Publications Warehouse

Lind, Carol J.

1978-01-01

Values of formation constants for lead hydroxide at 25 ??C were calculated from normal pulse polarographic measurements of 10-6 M lead in 0.01 M sodium perchlorate. The low concentrations simulate those found in many freshwaters, permitting direct application of the values when considering distributions of lead species. The precise evaluation of species distribution in waters at other ionic strengths requires activity coefficient corrections. As opposed to much of the previously published work done at high ionic strength, the values reported here were obtained at low ionic strength, permitting use of smaller and better defined activity coefficient corrections. These values were further confirmed by differential-pulse polarography and differential-pulse anodic stripping voltammetry data. The logs of the values for ??1??? ??2???, and ??3??? were calculated to be 6.59, 10.80, and 13.63, respectively. When corrected to zero ionic strength these values were calculated to be 6.77, 11.07, and 13.89, respectively.

Synthesis of rigid polyurethane foams from phosphorylated biopolyols.

PubMed

de Haro, Juan Carlos; López-Pedrajas, Daniel; Pérez, Ángel; Rodríguez, Juan Francisco; Carmona, Manuel

2017-08-18

Renewable resources are playing a key role on the synthesis of biodegradable polyols. Moreover, the incorporation of covalently linked additives is increasing in importance in the polyurethane (PU) market. In this work, previously epoxidized grape seed oil and methyl oleate were transformed into phosphorylated biopolyols through an acid-catalyzed ring-opening hydrolysis in the presence of H 3 PO 4 . The formation of phosphate polyesters was confirmed by FT-IR and 31 P-NMR. However, the synthesis of a high-quality PU rigid foam was not possible using exclusively these polyols attending to their low hydroxyl value. In that way, different rigid PU foams were prepared from the phosphorylated biopolyols and the commercial polyol Alcupol R4520. It was observed that phosphorylated biopolyols can be incorporated up to a 57 wt.% in the PU synthesis without significant structural changes with respect to the commercial foam. Finally, thermogravimetric and EDAX analyses revealed an improvement of thermal stability by the formation of a protective phosphorocarbonaceous char layer.

Catalytic actions of alkaline salts in reactions between 1,2,3,4-butanetetracarboxylic acid and cellulose: II. Esterification.

PubMed

Ji, Bolin; Tang, Peixin; Yan, Kelu; Sun, Gang

2015-11-05

1,2,3,4-Butanetetracarboxylic acid (BTCA) reacts with cellulose in two steps with catalysis of alkaline salts such as sodium hypophosphite: anhydride formation and esterification of anhydride with cellulose. The alkali metal ions were found effective in catalyzing formation of BTCA anhydride in a previous report. In this work, catalytic functions of the alkaline salts in the esterification reaction between BTCA anhydride and cellulose were investigated. Results revealed that acid anions play an important role in the esterification reaction by assisting removal of protons on intermediates and completion of the esterification between cellulose and BTCA. Besides, alkaline salts with lower pKa1 values of the corresponding acids are more effective ones for the reaction since addition of these salts could lead to lower pH values and higher acid anion concentrations in finishing baths. The mechanism explains the results of FTIR and wrinkle recovery angles of the fabrics cured under different temperatures and times. Copyright © 2015 Elsevier Ltd. All rights reserved.

Mobile multiwave lidar

NASA Astrophysics Data System (ADS)

Gritsuta, A. N.; Klimkin, A. V.; Kokhanenko, G. P.; Kuryak, A. N.; Osipov, K. Y.; Ponomarev, Yu. N.; Simonova, G. V.

2018-04-01

The task that faced the authors was construction of a mobile lidar complex for detection and investigation of aerosol-gas formations in the atmosphere. The complex must be constructed of commercial industrially produced components as much as possible. Many of engineering solutions had been previously worked out by the authors when the first lidar of such type was developed. The complex is designed for study of capabilities of lidar sensing for remote investigation of aerosol-gas formations by their fluorescence and Raman scattering spectra, as well as topographyc objects by fluorescence spectra of their surfaces. The complex has been tested in 2016, and may be applied for atmospheric sensing, for detection of potentially hazardous and dangerous admixtures above the cities, industrial and agricultural emissions, including emissions after disclosures of agricultural animal burial sites. The complex is mounted on a motor vehicle chassis and is energy-independent, and that allow using it for remote sensing of different objects in different natural conditions. Probing distance: 30 000 meters in elastic scattering channel and 5 000 meters in fluorescence channel.

EXPERIMENTAL INVESTIGATION OF THE ORTHO/PARA RATIO OF NEWLY FORMED MOLECULAR HYDROGEN ON AMORPHOUS SOLID WATER

DOE Office of Scientific and Technical Information (OSTI.GOV)

Gavilan, L.; Lemaire, J. L.; Dulieu, F.

2012-11-20

Several astronomical observations have shown that the ortho/para ratio (OPR) of H{sub 2} can differ from the expected statistical value of 3 or the local thermodynamic equilibrium (LTE) value at the gas or dust temperature. It is thus important to know the OPR of H{sub 2} newly formed on dust grain surfaces, in order to clarify the dependence of the observed OPR in space on the formation process. Using an experimental setup designed to mimic interstellar medium environments, we measured the OPR of H{sub 2} and D{sub 2} formed on the surface of porous amorphous water ice held at 10more » K. We report for the first time the OPR value for newly formed D{sub 2}, consistent with the expected LTE value at the high-temperature limit found by previous theoretical and experimental works on the determination of the OPR upon H{sub 2} formation on surfaces at low temperature.« less

On the Chemistry of Hydrides of N Atoms and O+ Ions

NASA Astrophysics Data System (ADS)

Awad, Zainab; Viti, Serena; Williams, David A.

2016-08-01

Previous work by various authors has suggested that the detection by Herschel/HIFI of nitrogen hydrides along the low-density lines of sight toward G10.6-0.4 (W31C) cannot be accounted for by gas-phase chemical models. In this paper we investigate the role of surface reactions on dust grains in diffuse regions, and we find that formation of the hydrides by surface reactions on dust grains with efficiency comparable to that for H2 formation reconciles models with observations of nitrogen hydrides. However, similar surface reactions do not contribute significantly to the hydrides of O+ ions detected by Herschel/HIFI that are present along many sight lines in the Galaxy. The O+ hydrides can be accounted for by conventional gas-phase chemistry either in diffuse clouds of very low density with normal cosmic-ray fluxes or in somewhat denser diffuse clouds with high cosmic-ray fluxes. Hydride chemistry in dense dark clouds appears to be dominated by gas-phase ion-molecule reactions.

Digital outcrop model of stratigraphy and breccias of the southern Franklin Mountains, El Paso, Texas

USGS Publications Warehouse

Bellian, Jerome A.; Kerans, Charles; Repetski, John E.; Derby, James R.; Fritz, R.D.; Longacre, S.A.; Morgan, W.A.; Sternbach, C.A.

2012-01-01

The breccias of the SFM were previously described as the result of collapsed paleocaves that formed during subaerial exposure related to the Sauk-Tippecanoe unconformity. A new approach in this work uses traditional field mapping combined with high-resolution (1-m [3.3-ft] point spacing) airborne light detection and ranging (LIDAR) data over 24 km2 (9 mi2) to map breccia and relevant stratal surfaces. Airborne LIDAR data were used to create a digital outcrop model of the SFM from which a detailed (1:2000 scale) geologic map was created. The geologic map includes formation, fault, and breccia contacts. The digital outcrop model was used to interpret three-dimensional spatial relationships of breccia bodies with respect to the current understanding of the tectonic and stratigraphic evolution of the SFM. The data presented here are used to discuss potential stratigraphic, temporal, and tectonic controls on the formation of caves within the study area that eventually collapsed to form the breccias currently exposed in outcrop.

NIMROD Modeling of HIT-SI and HIT-SI3

NASA Astrophysics Data System (ADS)

Morgan, Kyle; Jarboe, Tom; Hossack, Aaron

2016-10-01

The HIT-SI and HIT-SI3 devices are spheromaks formed and sustained via a set of Steady Inductive Helicity Injectors (SIHI) that are operated in AC. The experiment explores the formation and sustain of stable spheromaks with a variety of perturbation mode structures. The HIT-SI device consisted of two injectors with primarily n = 1 toroidal symmetry while the HIT-SI3 device has three injectors capable of a mixture of n = 1 and n = 2 perturbations or a primarily n = 3 perturbation, depending on the relative phase of the injectors. Using the NIMROD code to model these devices, we are able to validate with experimental results (previously only done on HIT-SI) and examine the interaction between the injectors and the spheromak. Simulations are performed with both finite and zero- β models to gain an understanding of the thermal properties of the device. Additionally, a set of extrapolation simulations has been performed illustrating the spontaneous formation of closed flux surfaces at high current amplification. Work supported by the US DOE.

Modeling the formation and aging of secondary organic aerosols in Los Angeles during CalNex 2010

NASA Astrophysics Data System (ADS)

Hayes, P. L.; Carlton, A. G.; Baker, K. R.; Ahmadov, R.; Washenfelder, R. A.; Alvarez, S.; Rappenglück, B.; Gilman, J. B.; Kuster, W. C.; de Gouw, J. A.; Zotter, P.; Prévôt, A. S. H.; Szidat, S.; Kleindienst, T. E.; Offenberg, J. H.; Jimenez, J. L.

2014-12-01

Four different parameterizations for the formation and evolution of secondary organic aerosol (SOA) are evaluated using a 0-D box model representing the Los Angeles Metropolitan Region during the CalNex 2010 field campaign. We constrain the model predictions with measurements from several platforms and compare predictions with particle and gas-phase observations from the CalNex Pasadena ground site. That site provides a unique opportunity to study aerosol formation close to anthropogenic emission sources with limited recirculation. The model SOA formed only from the oxidation of VOCs (V-SOA) is insufficient to explain the observed SOA concentrations, even when using SOA parameterizations with multi-generation oxidation that produce much higher yields than have been observed in chamber experiments, or when increasing yields to their upper limit estimates accounting for recently reported losses of vapors to chamber walls. The Community Multiscale Air Quality (WRF-CMAQ) model (version 5.0.1) provides excellent predictions of secondary inorganic particle species but underestimates the observed SOA mass by a factor of 25 when an older VOC-only parameterization is used, which is consistent with many previous model-measurement comparisons for pre-2007 anthropogenic SOA modules in urban areas. Including SOA from primary semi-volatile and intermediate volatility organic compounds (P-S/IVOCs) following the parameterizations of Robinson et al. (2007), Grieshop et al. (2009), or Pye and Seinfeld (2010) improves model/measurement agreement for mass concentration. When comparing the three parameterizations, the Grieshop et al. (2009) parameterization more accurately reproduces both the SOA mass concentration and oxygen-to-carbon ratio inside the urban area. Our results strongly suggest that other precursors besides VOCs, such as P-S/IVOCs, are needed to explain the observed SOA concentrations in Pasadena. All the parameterizations over-predict urban SOA formation at long photochemical ages (≈ 3 days) compared to observations from multiple sites, which can lead to problems in regional and global modeling. Among the explicitly modeled VOCs, the precursor compounds that contribute the greatest SOA mass are methylbenzenes. Polycyclic aromatic hydrocarbons (PAHs) are less important precursors and contribute less than 4% of the SOA mass. The amounts of SOA mass from diesel vehicles, gasoline vehicles, and cooking emissions are estimated to be 16-27, 35-61, and 19-35%, respectively, depending on the parameterization used, which is consistent with the observed fossil fraction of urban SOA, 71 (±3) %. In-basin biogenic VOCs are predicted to contribute only a few percent to SOA. A regional SOA background of approximately 2.1 μg m-3 is also present due to the long distance transport of highly aged OA. The percentage of SOA from diesel vehicle emissions is the same, within the estimated uncertainty, as reported in previous work that analyzed the weekly cycles in OA concentrations (Bahreini et al., 2012; Hayes et al., 2013). However, the modeling work presented here suggests a strong anthropogenic source of modern carbon in SOA, due to cooking emissions, which was not accounted for in those previous studies. Lastly, this work adapts a simple two-parameter model to predict SOA concentration and O/C from urban emissions. This model successfully predicts SOA concentration, and the optimal parameter combination is very similar to that found for Mexico City. This approach provides a computationally inexpensive method for predicting urban SOA in global and climate models. We estimate pollution SOA to account for 26 Tg yr-1 of SOA globally, or 17% of global SOA, 1/3 of which is likely to be non-fossil.

Dark Influences at the Threshold of Galaxy Formation

NASA Astrophysics Data System (ADS)

Boylan-Kolchin, Michael

As the faintest, lowest-luminosity, and most dark-matter-dominated extremes of the galaxy population, dwarf galaxies present unique opportunities for studying galaxy formation and the properties of dark matter. Accordingly, they have been observed in detail from the ground and (by NASA missions) from space with the hopes of unraveling how dwarf galaxies form, the effects of reionization on galaxy formation, and whether signatures of the particle nature of dark matter (DM) interactions can be observed. Such work has gained in importance as efforts to directly detect DM have so far yielded only upper limits to the interaction between DM and normal matter, leaving astrophysical tests as the primary means of investigating the nature of DM. We propose to undertake an extensive yet focused program of cosmological hydrodynamic simulations aimed at understanding the formation of dwarf galaxies. We will focus on the interplay between galaxy formation and dark matter in these galaxies, pointing toward specific observables to disentangle the effects of galaxy formation physics from the effects of DM physics. Our simulation suite will explore collisionless Cold Dark Matter (CDM) and broad classes of alternatives, where DM has a nonnegligible free-streaming length and / or self-scattering cross section. The novel aspects of the proposed work will include: (1) a modern treatment of baryonic physics using GIZMO, a new code that uses accurate meshless methods for hydrodynamics; (2) Feedback In Realistic Environments (FIRE), a suite of galaxy formation parametrizations with well-tested, explicit implementations of stellar feedback; (3) an exploration of realistic models of DM beyond CDM based on an effective theory of structure formation, with full baryonic physics; and (4) detailed mock observations of the simulations in order to identify specific, distinguishing tests for CDM and its alternatives. Our research will provide a framework within which astrophysical inferences about the nature of DM can be fairly and self-consistently tested. Crucially, we will explore uncertain aspects of galaxy formation and DM physics in a controlled manner, focusing on the halo mass range - 9.5 < log10(M/M_sun) < 10.5 - where current models are most uncertain. This will mark a major effort to systematically study different DM models combined with realistic treatments of galaxy formation physics that are implemented in an identical way for the various DM models. The results of the proposed research will be dramatic improvements in the understanding of how baryonic versus DM physics affect astrophysical observables. Such a study is very timely, as observations of dwarf galaxies in and beyond the Local Group have progressed substantially in recent years, with new revelations about dwarfs' DM content, star formation histories, and stellar metallicities challenging previous interpretations.

The role of phase separation for self-organized surface pattern formation by ion beam erosion and metal atom co-deposition

NASA Astrophysics Data System (ADS)

Hofsäss, H.; Zhang, K.; Pape, A.; Bobes, O.; Brötzmann, M.

2013-05-01

We investigate the ripple pattern formation on Si surfaces at room temperature during normal incidence ion beam erosion under simultaneous deposition of different metallic co-deposited surfactant atoms. The co-deposition of small amounts of metallic atoms, in particular Fe and Mo, is known to have a tremendous impact on the evolution of nanoscale surface patterns on Si. In previous work on ion erosion of Si during co-deposition of Fe atoms, we proposed that chemical interactions between Fe and Si atoms of the steady-state mixed Fe x Si surface layer formed during ion beam erosion is a dominant driving force for self-organized pattern formation. In particular, we provided experimental evidence for the formation of amorphous iron disilicide. To confirm and generalize such chemical effects on the pattern formation, in particular the tendency for phase separation, we have now irradiated Si surfaces with normal incidence 5 keV Xe ions under simultaneous gracing incidence co-deposition of Fe, Ni, Cu, Mo, W, Pt, and Au surfactant atoms. The selected metals in the two groups (Fe, Ni, Cu) and (W, Pt, Au) are very similar regarding their collision cascade behavior, but strongly differ regarding their tendency to silicide formation. We find pronounced ripple pattern formation only for those co deposited metals (Fe, Mo, Ni, W, and Pt), which are prone to the formation of mono and disilicides. In contrast, for Cu and Au co-deposition the surface remains very flat, even after irradiation at high ion fluence. Because of the very different behavior of Cu compared to Fe, Ni and Au compared to W, Pt, phase separation toward amorphous metal silicide phases is seen as the relevant process for the pattern formation on Si in the case of Fe, Mo, Ni, W, and Pt co-deposition.

Star formation across galactic environments

NASA Astrophysics Data System (ADS)

Young, Jason

I present here parallel investigations of star formation in typical and extreme galaxies. The typical galaxies are selected to be free of active galactic nuclei (AGN), while the extreme galaxies host quasars (the most luminous class of AGN). These two environments are each insightful in their own way; quasars are among the most violent objects in the universe, literally reshaping their host galaxies, while my sample of AGN-free star-forming galaxies ranges from systems larger than the Milky Way to small galaxies which are forming stars at unsustainably high rates. The current paradigm of galaxy formation and evolution suggests that extreme circumstances are key stepping stones in the assembly of galaxies like our Milky Way. To test this paradigm and fully explore its ramifications, this dual approach is needed. My sample of AGN-free galaxies is drawn from the KPNO International Spectroscopic Survey. This Halpha-selected, volume-limited survey was designed to detect star-forming galaxies without a bias toward continuum luminosity. This type of selection ensures that this sample is not biased toward galaxies that are large or nearby. My work studies the KISS galaxies in the mid- and far-infrared using photometry from the IRAC and MIPS instruments aboard the Spitzer Space Telescope. These infrared bands are particularly interesting for star formation studies because the ultraviolet light from young stars is reprocessed into thermal emission in the far-infrared (24mum MIPS) by dust and into vibrational transitions features in the mid-infrared (8.0mum IRAC) by polycyclic aromatic hydrocarbons (PAHs). The work I present here examines the efficiencies of PAH and thermal dust emission as tracers of star-formation rates over a wide range of galactic stellar masses. I find that the efficiency of PAH as a star-formation tracer varies with galactic stellar mass, while thermal dust has a highly variable efficiency that does not systematically depend on galactic stellar mass. Complementing this study of normal star-forming galaxies, my study of quasar host galaxies utilizes narrow- and medium-band images of eight Palomar-Green (PG) quasars from the WFPC2 and NICMOS instruments aboard the Hubble Space Telescope. Using images of a point-spread function (PSF) star in the same filters, I subtract the PSF of the quasar from each of the target images. The residual light images clearly show the host galaxies of the respective quasars. The narrow-band images were chosen to be centered on the Hbeta, [O II ], [O III], and Paalpha emission lines, allowing the use of line ratios and luminosities to create extinction and star formation maps. Additionally, I utilize the line-ratio maps to distinguish AGN-powered line emission from star formation powered line emission with line-diagnostic diagrams. I find star formation in each of the eight quasar host galaxies in my study. The bulk star-formation rates are lower than expected, suggesting that quasar host galaxies may be dynamically more advanced than previously believed. Seven of the eight quasar host galaxies in this study have higher-than-typical mass-specific star-formation rates. Additionally, I see evidence of shocked gas, supporting the hypotheses presented in earlier works that suggest that AGN activity quenches star formation in its host galaxy by disrupting its gas reservoir.

Assessing the Sensitivity of Different Life Stages for Sexual Disruption in Roach (Rutilus rutilus) Exposed to Effluents from Wastewater Treatment Works

PubMed Central

Liney, Katherine E.; Jobling, Susan; Shears, Jan A.; Simpson, Peter; Tyler, Charles R.

2005-01-01

Surveys of U.K. rivers have shown a high incidence of sexual disruption in populations of wild roach (Rutilus rutilus) living downstream from wastewater treatment works (WwTW), and the degree of intersex (gonads containing both male and female structural characteristics) has been correlated with the concentration of effluent in those rivers. In this study, we investigated feminized responses to two estrogenic WwTWs in roach exposed for periods during life stages of germ cell division (early life and the postspawning period). Roach were exposed as embryos from fertilization up to 300 days posthatch (dph; to include the period of gonadal sex differentiation) or as postspawning adult males, and including fish that had received previous estrogen exposure, for either 60 or 120 days when the annual event of germ cell proliferation occurs. Both effluents induced vitellogenin synthesis in both life stages studied, and the magnitude of the vitellogenic responses paralleled the effluent content of steroid estrogens. Feminization of the reproductive ducts occurred in male fish in a concentration-dependent manner when the exposure occurred during early life, but we found no effects on the reproductive ducts in adult males. Depuration studies (maintenance of fish in clean water after exposure to WwTW effluent) confirmed that the feminization of the reproductive duct was permanent. We found no evidence of ovotestis development in fish that had no previous estrogen exposure for any of the treatments. In wild adult roach that had previously received exposure to estrogen and were intersex, the degree of intersex increased during the study period, but this was not related to the immediate effluent exposure, suggesting a previously determined programming of ovotestis formation. PMID:16203238

Magnetite solubility and phase stability in alkaline media at elevated temperatures

DOE Office of Scientific and Technical Information (OSTI.GOV)

Ziemniak, S.E.; Jones, M.E.; Combs, K.E.S.

Magnetite, Fe{sub 3}O{sub 4}, is the dominant oxide constituent of the indigenous corrosion layers that form on iron base alloys in high purity, high temperature water. The apparent simultaneous stability of two distinct oxidation states of iron in this metal oxide is responsible for its unique solubility behavior. The present work was undertaken to extend the experimental and theoretical bases for estimating solubilities of an iron corrosion product (Fe{sub 3}O{sub 4}/Fe(OH){sub 2}) over a broader temperature range and in the presence of complexing, pH-controlling reagents. These results indicate that a surface layer of ferrous hydroxide controls magnetite solubility behavior atmore » low temperatures in much the same manner as a surface layer of nickel(II) hydroxide was previously reported to control the low temperature solubility behavior of NiO. The importance of Fe(III) ion complexes implies not only that most previously-derived thermodynamic properties of the Fe(OH){sub 3}{sup {minus}} ion are incorrect, but that magnetite phase stability probably shifts to favor a sodium ferric hydroxyphosphate compound in alkaline sodium phosphate solutions at elevated temperatures. The test methodology involved pumping alkaline solutions of known composition through a bed of Fe{sub 3}O{sub 4} granules and analyzing the emerging solution for Fe. Two pH-controlling reagents were tested: sodium phosphate and ammonia. Equilibria for the following reactions were described in thermodynamic terms: (a) Fe(OH){sub 2}/Fe{sub 3}O{sub 4} dissolution and transformation, (b) Fe(II) and Fe(III) ion hydroxocomplex formation (hydrolysis), (c) Fe(II) ion amminocomplex formation, and (d) Fe(II) and Fe(III) ion phosphatocomplex formation. 36 refs.« less

Characterization of the methemoglobin forming metabolites of benzocaine and lidocaine.

PubMed

Hartman, Neil; Zhou, Hongfei; Mao, Jinzhe; Mans, Daniel; Boyne, Michael; Patel, Vikram; Colatsky, Thomas

2017-05-01

1. Topical anesthesia with benzocaine or lidocaine occasionally causes methemoglobinemia, an uncommon but potentially fatal disorder where the blood has a reduced ability to transport oxygen. Previous in vitro studies using human whole blood have shown that benzocaine causes more methemoglobin (MetHb) formation than lidocaine, and that both compounds require metabolic transformation to form the MetHb producing species. In the current investigation, the active species of benzocaine forming the MetHb was investigated. 2. HPLC analysis of benzocaine samples incubated with human hepatic S9 showed the formation of a peak with the same UV spectrum and retention time as benzocaine hydroxylamine (BenzNOH). To confirm the activity of BenzNOH, MetHb production following exposure to the compound was determined in whole human blood using an Avoximeter 4000 CO-oximeter. 3. BenzNOH produced MetHb in a concentration dependent manner without the need for metabolic activation. Benzocaine in the presence of metabolic activation required a concentration of 500 μM to produce a similar degree of MetHb formation as 20 μM BenzNOH without activation. Previous work suggested that two metabolites of lidocaine may also form MetHb; N-hydroxyxylidine and 4-hydroxyxylidine. Of these two metabolites 4-hydroxyxylidine produced the most MetHb in whole blood in vitro in the absence of metabolic activation, however BenzNOH produced up to 14.2 times more MetHb than 4-hydroxyxylidine at a similar concentration. 4. These results suggest that the ability of benzocaine to form MetHb is likely to be mediated through its hydroxylamine metabolite and that this metabolite is inherently more active than the potentially MetHb-forming metabolites of lidocaine.

An air pollution episode and its formation mechanism during the tropical cyclone Nuri's landfall in a coastal city of south China

NASA Astrophysics Data System (ADS)

Yang, John Xun; Lau, Alexis Kai Hon; Fung, Jimmy Chi Hung; Zhou, Wen; Wenig, Mark

2012-07-01

In this work we investigated an air pollution episode during the landfall process of a tropical cyclone (TC) in Hong Kong. TCs affect air condition and account for most air pollution episodes in summer of this region. In August 2008, TC Nuri made direct landfall in Hong Kong. Before its landfall, an air pollution episode occurred, where major pollutants like SO2 and PM10 increased eight and six times higher respectively. Rather than using single measurement method, we combined ground air sampling, lidar, sunphotometer and satellite lidar CALIPSO with focus on aerosol to study the episode mechanism, and some new phenomena were found. During the episode, it was found that heavy inland aerosol plumes existed in areas larger than urbanized regions and were elevated vertically and transported southward. During episode, planetary boundary layer (PBL) expansion and height increase were observed, which is different from previous reported PBL compression and height decrease. While vertical subsidence and horizontal stagnation and consequently local aerosol accumulation were attributed as the main episode cause in previous cases, our observation showed that transported aerosols dominated in this TC landfall event. This can be further confirmed by examining aerosol chemical composition, size distribution and single scattering albedo, where transported related species showed significantly change and local indicators remained relatively stable. Invigorated cloud droplets were found on the boundary layer top upon aerosol elevation. The results indicate that site difference and TC tracks should be considered for analyzing episode formation mechanism. They can cause difference in the strength of vertical subsidence and horizontal advection and affect pollution flow direction, which subsequently results in different pollution formation processes.

Physiotherapy students' perspectives of online e-learning for interdisciplinary management of chronic health conditions: a qualitative study.

PubMed

Gardner, Peter; Slater, Helen; Jordan, Joanne E; Fary, Robyn E; Chua, Jason; Briggs, Andrew M

2016-02-16

To qualitatively explore physiotherapy students' perceptions of online e-learning for chronic disease management using a previously developed, innovative and interactive, evidence-based, e-learning package: Rheumatoid Arthritis for Physiotherapists e-Learning (RAP-eL). Physiotherapy students participated in three focus groups in Perth, Western Australia. Purposive sampling was employed to ensure maximum heterogeneity across age, gender and educational background. To explore students' perspectives on the advantages and disadvantages of online e-learning, ways to enhance e-learning, and information/learning gaps in relation to interdisciplinary management of chronic health conditions, a semi-structured interview schedule was developed. Verbatim transcripts were analysed using inductive methods within a grounded theory approach to derive key themes. Twenty-three students (78 % female; 39 % with previous tertiary qualification) of mean (SD) age 23 (3.6) years participated. Students expressed a preference for a combination of both online e-learning and lecture-style learning formats for chronic disease management, citing flexibility to work at one's own pace and time, and access to comprehensive information as advantages of e-learning learning. Personal interaction and ability to clarify information immediately were considered advantages of lecture-style formats. Perceived knowledge gaps included practical application of interdisciplinary approaches to chronic disease management and developing and implementing physiotherapy management plans for people with chronic health conditions. Physiotherapy students preferred multi-modal and blended formats for learning about chronic disease management. This study highlights the need for further development of practically-oriented knowledge and skills related to interdisciplinary care for people with chronic conditions among physiotherapy students. While RAP-eL focuses on rheumatoid arthritis, the principles of learning apply to the broader context of chronic disease management.

Combining physical galaxy models with radio observations to constrain the SFRs of high-z dusty star-forming galaxies

NASA Astrophysics Data System (ADS)

Lo Faro, B.; Silva, L.; Franceschini, A.; Miller, N.; Efstathiou, A.

2015-03-01

We complement our previous analysis of a sample of z ˜ 1-2 luminous and ultraluminous infrared galaxies [(U)LIRGs], by adding deep Very Large Array radio observations at 1.4 GHz to a large data set from the far-UV to the submillimetre, including Spitzer and Herschel data. Given the relatively small number of (U)LIRGs in our sample with high signal-to-noise (S/N) radio data, and to extend our study to a different family of galaxies, we also include six well-sampled near-infrared (near-IR)-selected BzK galaxies at z ˜ 1.5. From our analysis based on the radtran spectral synthesis code GRASIL, we find that, while the IR luminosity may be a biased tracer of the star formation rate (SFR) depending on the age of stars dominating the dust heating, the inclusion of the radio flux offers significantly tighter constraints on SFR. Our predicted SFRs are in good agreement with the estimates based on rest-frame radio luminosity and the Bell calibration. The extensive spectrophotometric coverage of our sample allows us to set important constraints on the star formation (SF) history of individual objects. For essentially all galaxies, we find evidence for a rather continuous SFR and a peak epoch of SF preceding that of the observation by a few Gyr. This seems to correspond to a formation redshift of z ˜ 5-6. We finally show that our physical analysis may affect the interpretation of the SFR-M⋆ diagram, by possibly shifting, with respect to previous works, the position of the most dust obscured objects to higher M⋆ and lower SFRs.

Galaxy And Mass Assembly (GAMA): galaxy environments and star formation rate variations

NASA Astrophysics Data System (ADS)

Wijesinghe, D. B.; Hopkins, A. M.; Brough, S.; Taylor, E. N.; Norberg, P.; Bauer, A.; Brown, M. J. I.; Cameron, E.; Conselice, C. J.; Croom, S.; Driver, S.; Grootes, M. W.; Jones, D. H.; Kelvin, L.; Loveday, J.; Pimbblet, K. A.; Popescu, C. C.; Prescott, M.; Sharp, R.; Baldry, I.; Sadler, E. M.; Liske, J.; Robotham, A. S. G.; Bamford, S.; Bland-Hawthorn, J.; Gunawardhana, M.; Meyer, M.; Parkinson, H.; Drinkwater, M. J.; Peacock, J.; Tuffs, R.

2012-07-01

We present a detailed investigation into the effects of galaxy environment on their star formation rates (SFRs) using galaxies observed in the Galaxy And Mass Assembly (GAMA) survey. We use three independent volume-limited samples of galaxies within z < 0.2 and Mr < -17.8. We investigate the known SFR-density relationship and explore in detail the dependence of SFR on stellar mass and density. We show that the SFR-density trend is only visible when we include the passive galaxy population along with the star-forming population. This SFR-density relation is absent when we consider only the star-forming population of galaxies, consistent with previous work. While there is a strong dependence of the EWHα on density we find, as in previous studies, that these trends are largely due to the passive galaxy population and this relationship is absent when considering a 'star-forming' sample of galaxies. We find that stellar mass has the strongest influence on SFR and EWHα with the environment having no significant effect on the star formation properties of the star-forming population. We also show that the SFR-density relationship is absent for both early- and late-type star-forming galaxies. We conclude that the stellar mass has the largest impact on the current SFR of a galaxy, and any environmental effect is not detectable. The observation that the trends with density are due to the changing morphology fraction with density implies that the time-scales must be very short for any quenching of the SFR in infalling galaxies. Alternatively, galaxies may in fact undergo predominantly in situ evolution where the infall and quenching of galaxies from the field into dense environments is not the dominant evolutionary mode.

Systematic investigation of the barrier discharge operation in helium, nitrogen, and mixtures: discharge development, formation and decay of surface charges

NASA Astrophysics Data System (ADS)

Tschiersch, R.; Bogaczyk, M.; Wagner, H.-E.

2014-09-01

As a logical extension to previous investigations of the barrier discharge (BD) in helium and nitrogen, the present work reports on the operation in any mixtures of both pure gases. Using a well-established plane-parallel discharge cell configuration allows to study the influence of the He/N2 mixing ratio on the formation of different discharge modes. Their characterization was made by measuring the discharge emission development together with the formation and decay of surface charges on a bismuth silicon oxide (Bi12SiO20, BSO) crystal. This was realized by the simultaneous application of the spatio-temporally resolved optical emission spectroscopy, and the electro-optic Pockels effect in combination with a CCD high speed camera. The existence diagram for diffuse and filamentary BDs was determined by varying the amplitude and shape of the applied voltage. Over the entire range of the He/N2 ratio, the diffuse mode can be operated at moderate voltage amplitudes whereas filamentation occurs at significant overvoltage and is favoured by a high voltage slew rate. Irrespective of the discharge mode, the overall charge transfer during a discharge breakdown is found to be in excellent agreement with the amount of accumulated surface charges. An exponential decay of the surface charge deposited on the BSO crystal is induced by LED illumination beyond a typical discharge cycle. During the decay process, a broadening of the radial profiles of positive as well as negative surface charge spots originating from previous microdischarges is observed. The investigations contribute to a better understanding of the charge accumulation at a dielectric.

Filament Channel Formation, Eruption, and Jet Generation

NASA Astrophysics Data System (ADS)

DeVore, C. Richard; Antiochos, Spiro K.; Karpen, Judith T.

2017-08-01

The mechanism behind filament-channel formation is a longstanding mystery, while that underlying the initiation of coronal mass ejections and jets has been studied intensively but is not yet firmly established. In previous work, we and collaborators have investigated separately the consequences of magnetic-helicity condensation (Antiochos 2013) for forming filament channels (Zhao et al. 2015; Knizhnik et al. 2015, 2017a,b) and of the embedded-bipole model (Antiochos 1996) for generating reconnection-driven jets (Pariat et al. 2009, 2010, 2015, 2016; Wyper et al. 2016, 2017). Now we have taken a first step toward synthesizing these two lines of investigation. Our recent study (Karpen et al. 2017) of coronal-hole jets with gravity and wind employed an ad hoc, large-scale shear flow at the surface to introduce magnetic free energy and form the filament channel. In this effort, we replace the shear flow with an ensemble of local rotation cells, to emulate the Sun’s ever-changing granules and supergranules. As in our previous studies, we find that reconnection between twisted flux tubes within the closed-field region concentrates magnetic shear and free energy near the polarity inversion line, forming the filament channel. Onset of reconnection between this field and the external, unsheared, open field releases stored energy to drive the impulsive jet. We discuss the results of our new simulations with implications for understanding solar activity and space weather.

Planetesimal formation by an axisymmetric radial bump of the column density of the gas in a protoplanetary disk

NASA Astrophysics Data System (ADS)

Onishi, Isamu K.; Sekiya, Minoru

2017-04-01

We investigate the effect of a radial pressure bump in a protoplanetary disk on planetesimal formation. We performed the two-dimensional numerical simulation of the dynamical interaction of solid particles and gas with an initially defined pressure bump under the assumption of axisymmetry. The aim of this work is to elucidate the effects of the stellar vertical gravity that were omitted in a previous study. Our results are very different from the previous study, which omitted the vertical gravity. Because dust particles settle toward the midplane because of the vertical gravity to form a thin dust layer, the regions outside of the dust layer are scarcely affected by the back-reaction of the dust. Hence, the gas column density keeps its initial profile with a bump, and dust particles migrate toward the bump. In addition, the turbulence due to the Kelvin-Helmholtz instability caused by the difference of the azimuthal velocities between the inside and outside of the dust layer is suppressed where the radial pressure gradient is reduced by the pressure bump. The dust settling proceeds further where the turbulence is weak, and a number of dust clumps are formed. The dust density in some clumps exceeds the Roche density. Planetesimals are considered to be formed from these clumps owing to the self-gravity.[Figure not available: see fulltext.

Formation of PCDD/Fs from Oxidation of 2-Monochlorophenol over an Fe2O3/Silica Surface

PubMed Central

Nganai, Shadrack; Lomnicki, Slawo; Dellinger, Barry

2012-01-01

The role of iron in surface-mediated formation of polychlorinated dibenzo-p-dioxins and dibenzofurans (PCDD/Fs) from 2-chlorophenol (2-MCP) was investigated over the temperature range of 200 to 550°C under oxidative conditions. In order to compare and contrast with previous work on copper and ferric oxide-mediated pyrolysis of 2-MCP, identical reaction conditions were maintained (50 ppm 2-MCP, model fly-ash particles containing 5% Fe2O3 on silica). Observed products included dibenzo-p-dioxin (DD), 1-monochlorodibenzo-p-dioxin (1-MCDD), dibenzofuran (DF), 4,6-dichlorodibenzofuran (4,6-DCDF), 2,4– and 2,6-dichlorophenol, 2,4,6-trichlorophenol, quinone, catechol, chloro-o-quinone, chlorocatechol and polychlorinated benzenes. Yields of DD and 1-MCDD were 2 and 5 times higher than under pyolysis conditions, respectively. Although 4,6-DCDF was the major PCDD/F product formed with a yield that was 2.5x greater than under pyrolysis, the yield of non-chlorinated DF, which was the dominant PCDD/F product under pyrolysis, decreased by a factor of 3. Furthermore, the ~2x higher yield of PCDDs under oxidative conditions resulted in a PCDD to PCDF ratio of 0.75 compared to a relatively low ratio of 0.39 previously observed under pyrolytic conditions. PMID:22525510

Early formation of preferential flow in a homogeneous snowpack observed by micro-CT

NASA Astrophysics Data System (ADS)

Avanzi, Francesco; Petrucci, Giacomo; Matzl, Margret; Schneebeli, Martin; De Michele, Carlo

2017-05-01

We performed X-ray microtomographic observations of wet-snow metamorphism during controlled continuous melting and melt-freeze events in the laboratory. Three blocks of snow were sieved into boxes and subjected to cyclic, superficial heating or heating-cooling to reproduce vertical water infiltration patterns in snow similarly to natural conditions. Periodically, samples were taken at different heights and scanned. Results suggest that wet-snow metamorphism dynamics are highly heterogeneous even in an initially homogeneous snowpack. Consistent with previous work, we observed an increase with time in the thickness of the ice structure, which is a measure of grain size. However, this was coupled with large temporal scatter between consecutive measurements of the specific surface area and of the statistical moments of grain thickness distributions. Because of marked differences in the right tail, grain thickness distributions did not show shape invariance with time, contrary to previous analyses. In our experiments, wet-snow metamorphism showed two strikingly different patterns: homogeneous coarsening superimposed by faster heterogeneous coarsening in areas that were affected by preferential percolation of water. Liquid water movement in snow and fast structural evolution may be thus intrinsically coupled by early formation of preferential flow at local scale. These observations suggest that further experiments are highly needed to fully understand wet-snow metamorphism and infiltration patterns in a natural snowpack.

Xanthomonas citri ssp. citri requires the outer membrane porin OprB for maximal virulence and biofilm formation.

PubMed

Ficarra, Florencia A; Grandellis, Carolina; Galván, Estela M; Ielpi, Luis; Feil, Regina; Lunn, John E; Gottig, Natalia; Ottado, Jorgelina

2017-06-01

Xanthomonas citri ssp. citri (Xcc) causes canker disease in citrus, and biofilm formation is critical for the disease cycle. OprB (Outer membrane protein B) has been shown previously to be more abundant in Xcc biofilms compared with the planktonic state. In this work, we showed that the loss of OprB in an oprB mutant abolishes bacterial biofilm formation and adherence to the host, and also compromises virulence and efficient epiphytic survival of the bacteria. Moreover, the oprB mutant is impaired in bacterial stress resistance. OprB belongs to a family of carbohydrate transport proteins, and the uptake of glucose is decreased in the mutant strain, indicating that OprB transports glucose. Loss of OprB leads to increased production of xanthan exopolysaccharide, and the carbohydrate intermediates of xanthan biosynthesis are also elevated in the mutant. The xanthan produced by the mutant has a higher viscosity and, unlike wild-type xanthan, completely lacks pyruvylation. Overall, these results suggest that Xcc reprogrammes its carbon metabolism when it senses a shortage of glucose input. The participation of OprB in the process of biofilm formation and virulence, as well as in metabolic changes to redirect the carbon flux, is discussed. Our results demonstrate the importance of environmental nutrient supply and glucose uptake via OprB for Xcc virulence. © 2016 BSPP AND JOHN WILEY & SONS LTD.

Advanced Horizontal Well Recirculation Systems for Geothermal Energy Recovery in Sedimentary and Crystalline Formations

DOE Office of Scientific and Technical Information (OSTI.GOV)

Bruno, Mike S.; Detwiler, Russell L.; Lao, Kang

2012-12-13

There is increased recognition that geothermal energy resources are more widespread than previously thought, with potential for providing a significant amount of sustainable clean energy worldwide. Recent advances in drilling, completion, and production technology from the oil and gas industry can now be applied to unlock vast new geothermal resources, with some estimates for potential electricity generation from geothermal energy now on the order of 2 million megawatts. The primary objectives of this DOE research effort are to develop and document optimum design configurations and operating practices to produce geothermal power from hot permeable sedimentary and crystalline formations using advancedmore » horizontal well recirculation systems. During Phase I of this research project Terralog Technologies USA and The University of California, Irvine (UCI), have completed preliminary investigations and documentation of advanced design concepts for paired horizontal well recirculation systems, optimally configured for geothermal energy recovery in permeable sedimentary and crystalline formations of varying structure and material properties. We have also identified significant geologic resources appropriate for application of such technology. The main challenge for such recirculation systems is to optimize both the design configuration and the operating practices for cost-effective geothermal energy recovery. These will be strongly influenced by sedimentary formation properties, including thickness and dip, temperature, thermal conductivity, heat capacity, permeability, and porosity; and by working fluid properties.« less

The Photochemistry of Pyrimidine in Pure H2O Ice Subjected to Different Radiation Environments and the Formation of Uracil

NASA Technical Reports Server (NTRS)

Nuevo, M.; Chen, Y.-J.; Materese. C. K..; Hu, W.-J.; Qiu, J.-M.; Wu, S.-R.; Fung, H.-S.; Sandford, S. A.; Chu, C.-C.; Yih, T.-S.;

N-body simulations of terrestrial planet formation under the influence of a hot Jupiter

DOE Office of Scientific and Technical Information (OSTI.GOV)

Ogihara, Masahiro; Kobayashi, Hiroshi; Inutsuka, Shu-ichiro, E-mail: omasahiro@oca.eu, E-mail: ogihara@nagoya-u.jp

We investigate the formation of multiple-planet systems in the presence of a hot Jupiter (HJ) using extended N-body simulations that are performed simultaneously with semianalytic calculations. Our primary aims are to describe the planet formation process starting from planetesimals using high-resolution simulations, and to examine the dependences of the architecture of planetary systems on input parameters (e.g., disk mass, disk viscosity). We observe that protoplanets that arise from oligarchic growth and undergo type I migration stop migrating when they join a chain of resonant planets outside the orbit of an HJ. The formation of a resonant chain is almost independentmore » of our model parameters, and is thus a robust process. At the end of our simulations, several terrestrial planets remain at around 0.1 AU. The formed planets are not equal mass; the largest planet constitutes more than 50% of the total mass in the close-in region, which is also less dependent on parameters. In the previous work of this paper, we have found a new physical mechanism of induced migration of the HJ, which is called a crowding-out. If the HJ opens up a wide gap in the disk (e.g., owing to low disk viscosity), crowding-out becomes less efficient and the HJ remains. We also discuss angular momentum transfer between the planets and disk.« less

A Thermal Model for the Differentiation of Asteroid 4 Vesta, Based on Radiogenic and Collisional Heating

NASA Astrophysics Data System (ADS)

Ghosh, Amitabha

A finite element code has been developed to study the thermal history of asteroid 4 Vesta. This is the first attempt to model the thermal history of a differentiated asteroid, from accretion through core and crust formation and subsequent cooling until geochemical closure is attained. Previous thermal models were simpler formulations aimed at explaining metamorphism and aqueous alteration in unmelted asteroids. The results of the simulation are consistent with chronological measurements of cumulate and noncumulate eucrites, meteorites belonging to the HED suite, believed to have been derived from 4 Vesta. The work solves major problems with the hypothesis of heating by decay of 26Al, an extinct radionuclide, believed to be a plausible heat source in the early solar system. The simulation draws a model chronology of Vesta and predicts the time interval of accretion at 2.85 Myrs, the absolute times (with respect to CAI formation) of core formation at 4.58 Myrs, crust formation at 6.58 Myrs and geochemical closure on Vesta at ~100 Myrs. It is concluded that neither collisional heating nor heating due to the radioactive decay of 60Fe caused any perceptible difference in the whole-body thermal history of Vesta. Further, the thermal model suggested that the olivine-rich spot observed on Vesta may not be excavated mantle material, but may be unmelted near-surface material that escaped the asteroid's differentiation history.

Functionalization of PCL-3D Electrospun Nanofibrous Scaffolds for Improved BMP2-Induced Bone Formation.

PubMed

Miszuk, Jacob M; Xu, Tao; Yao, Qingqing; Fang, Fang; Childs, Josh D; Hong, Zhongkui; Tao, Jianning; Fong, Hao; Sun, Hongli

2018-03-01

Bone morphogenic protein 2 (BMP2) is a key growth factor for bone regeneration, possessing FDA approval for orthopedic applications. BMP2 is often required in supratherapeutic doses clinically, yielding adverse side effects and substantial treatment costs. Considering the crucial role of materials for BMPs delivery and cell osteogenic differentiation, we devote to engineering an innovative bone-matrix mimicking niche to improve low dose of BMP2-induced bone formation. Our previous work describes a novel technique, named thermally induced nanofiber self-agglomeration (TISA), for generating 3D electrospun nanofibrous (NF) polycaprolactone (PCL) scaffolds. TISA process could readily blend PCL with PLA, leading to increased osteogenic capabilities in vitro , however, these bio-inert synthetic polymers produced limited BMP2-induced bone formation in vivo. We therefore hypothesize that functionalization of NF 3D PCL scaffolds with bone-like hydroxyapatite (HA) and BMP2 signaling activator phenamil will provide a favorable osteogenic niche for bone formation at low doses of BMP2. Compared to PCL-3D scaffolds, PCL/HA-3D scaffolds demonstrated synergistically enhanced osteogenic differentiation capabilities of C2C12 cells with phenamil. Importantly, in vivo studies showed this synergism was able to generate significantly increased new bone in an ectopic mouse model, suggesting PCL/HA-3D scaffolds act as a favorable synthetic extracellular matrix for bone regeneration.

Primary damage formation in bcc iron

NASA Astrophysics Data System (ADS)

Stoller, R. E.; Odette, G. R.; Wirth, B. D.

1997-11-01

Primary defect formation in bee iron has been extensively investigated using the methods of molecular dynamics (MD) and Monte Carlo (MC) simulation. This research has employed a modified version of the Finnis-Sinclair interatomic potential. MD was used in the simulation of displacement cascades with energies up to 40 keV and to examine the migration of the interstitial clusters that were observed to form in the cascade simulations. Interstitial cluster binding energies and the stable cluster configurations were determined by structural relaxation and energy minimization using a MC method with simulated annealing. Clusters containing up to 19 interstitials were examined. Taken together with the previous work, these new simulations provide a reasonably complete description of primary defect formation in iron. The results of the displacement cascade simulations have been used to characterize the energy and temperature dependence of primary defect formation in terms of two parameters: (1) the number of surviving point defects and (2) the fraction of the surviving defects that are contained in clusters. The number of surviving point defects is expressed as a fraction of the atomic displacements calculated using the secondary displacement model of Norgett-Robinson-Torrens (NRT). Although the results of the high energy simulations are generally consistent with those obtained at lower energies, two notable exceptions were observed. The first is that extensive subcascade formation at 40 keV leads to a higher defect survival fraction than would be predicted from extrapolation of the results obtained for energies up to 20 keV. The stable defect fraction obtained from the MD simulations is a smoothly decreasing function up to 20 keV. Subcascade formation leads to a slight increase in this ratio at 40 keV, where the value is about the same as at 10 keV. Secondly, the potential for a significant level of in-cascade vacancy clustering was observed. Previous cascade studies employing this potential have reported extensive interstitial clustering, but little evidence of vacancy clustering. Interstitial clusters were found to be strongly bound, with binding energies in excess of 1 eV. The larger clusters exhibited a complex, 3D structure and were composed of <111> crowdions. These clusters were observed to migrate by collective <111> translations with an activation energy on the order of 0.1 eV.

On the road to DSM-V and ICD-11.

PubMed

Kupfer, David J; Regier, Darrel A; Kuhl, Emily A

2008-11-01

Development of the fifth edition of the Diagnostic and Statistical Manual of Mental Disorders (DSM-V) has been ongoing since 1994, though official release will not occur for another 4 years. Potential revisions are being derived from multiple sources, including building on perceived limitations of DSM-IV; broad-based literature reviews; secondary and primary data analyses; and discussions between global members of the mental health community. The current focus on aligning DSM with the International Classification of Diseases-11 (ICD-11) speaks to the importance of creating a unified text that embraces cross-cutting issues of diagnostics, such as developmental, age-related, and cultural phenomena. International discourse is vital to this process and has been fostered by a National Institutes of Health-sponsored conference series on diagnosis-specific topics. From this series, the DSM-V Task Force developed the following set of revision principals to guide the efforts of the DSM-V Work Groups: grounding recommendations in empirical evidence; maintaining continuity with previous editions of DSM; removing a priori limitations on the amount of changes DSM-V may incur; and maintaining DSM's status as a living document. With work group formation complete, members are currently carrying out the research and revision recommendations proposed during the conference series. Ongoing activities include adding specialized advisors to each work group; completing literature reviews and planning data analyses; and forming study groups to discuss integration of cross-cutting issues (e.g., developmental lifespan factors; formation of diagnostic spectra). The road to DSM-V and ICD-11 has been challenging, but members continue to work diligently in their goal of constructing the most harmonious, scientifically sound, and clinically relevant DSM to date.

The Late Integrated Sachs-Wolfe Effect and its detectability in galaxy-redshift surveys

NASA Astrophysics Data System (ADS)

Valencia-Díaz, D. R.; Muñoz-Cuartas, J. C.

2017-07-01

The late Integrated Sachs-Wolfe (ISW) effect is underwent by the Cosmic Microwave Background (CMB) photons due to the presence of the Large-Scale Structures (LSS) in an expanding Universe and can be measured through the temperature fluctuations of the CMB. In this work we use numerical simulations of structure formation to study the detectability of the ISW effect. Our method comprises the estimation of the density field through a Cloud-In-Cell mass assignment scheme. With the help of Fourier transforms we estimate the time derivative of the gravitational potential field in Fourier and in coordinate's space. Finally, this field is integrated numerically to know the ISW contribution. We study the time derivative of the potential in two approaches. First, an exact solution that makes use of the full velocity field. Second, a linear approximation related with the linear theory for the formation of LSS. We apply the method to three cosmological simulations. First, a box of 400 h-1 Mpc; second, the MultiDark1 simulation; third, the MultiDark-Plank simulation. For all cases we obtain coherent results with the expected in the literature for a ΛCDM cosmology: with the exact solution the temperature fluctuation is near the ± 30 μ K; the linear approximation shows a signal in the expected range of ± 20 μ K. This positive detection on simulations is important in order to know an expectation for the results we should obtain when working with observational data and will have important implications due to the lack of consensus about the detection of the ISW effect in previous works. Acknowledgements: This work was supported by Colciencias and Universidad de Antioquia, Convenio Beca-Pasantía Joven Investigador Convocatoria 645 de 2014.

Search for companions in visual binary systems using precise radial-velocity measurements

NASA Astrophysics Data System (ADS)

Katoh, Noriyuki; Itoh, Yoichi; Sato, Bun'ei

2018-05-01

The frequency of triple and quadruple systems is considered to be high in the early phase of star formation. Some multiple systems decay in the pre-main-sequence phase. The multiplicity of main-sequence stars provides clues about the evolution of binary systems. This work searched for companions of five components of visual binary systems using precise radial-velocity measurements. Their radial velocities were monitored from 2007 to 2012 using the HIgh Dispersion Echelle Spectrograph (HIDES) installed on the Okayama Astrophysical Observatory (OAO) 1.88 m reflector. In combination with previous work, this work searched for companions with an orbital period of less than 9 yr for the five bodies. We found periodic variations in the radial velocities for ADS 6190 A and BDS 10966A. The radial velocities of ADS 7311 A, 31 Dra A, and 31 Dra B show significant trends. ADS 6190 A is an SB1 binary with an orbital period of 366.2 d. The minimum mass of the secondary star is 0.5^{+0.7}_{-0.2} M_{⊙}. The radial velocity of ADS 7311 A was monitored for an observational span of 3200 d. We rejected a planetary-mass companion as the cause of a decreasing trend in the radial velocity of ADS 7311 A. This work confirmed that the periodic variation in the radial velocity of BDS 10966 A is 771.1 d. Bisector analysis did not reveal a correlation between the asymmetry of a spectral line and the radial velocity of BDS 10966 A. We rejected nonradial oscillation of the photosphere as the source of the radial velocity variation. The variation may be caused by the rotational modulation owing to surface inhomogeneity. The orbital elements of 31 Dra A derived in this paper are consistent with those in a previous paper. 31 Dra A system is an SB1 binary with a minimum mass ratio of 0.30 ± 0.08. 31 Dra B exhibits a periodic variation in radial velocity. The orbital elements derived in this work are consistent with those reported previously by others. The variation is caused by a circumstellar planet.

Developing a model of adolescent friendship formation on the internet.

PubMed

Peter, Jochen; Valkenburg, Patti M; Schouten, Alexander P

2005-10-01

Previous research has been largely silent about what precisely influences online friendship formation and has ignored motives for online communication as potential explanations. Drawing on a sample of 493 adolescents, this study tested a path model of adolescent friendship formation including as predictors introversion/extraversion, online self-disclosure, motive for social compensation, and frequency of online communication. Our path analysis showed that extraverted adolescents self-disclosed and communicated online more frequently, which, in turn, facilitated the formation of online friendships. Introverted adolescents, by contrast, were more strongly motivated to communicate online to compensate for lacking social skills. This increased their chances of making friends online. Among introverted adolescents, a stronger motive for social compensation also led to more frequent online communication and online self-disclosure, resulting in more online friendships. The model suggests that the antecedents of online friendship formation are more complex than previously assumed and that motives for online communication should be studied more closely.

Nuclear Reactions in the Crusts of Accreting Neutron Stars

NASA Astrophysics Data System (ADS)

Lau, R.; Beard, M.; Gupta, S. S.; Schatz, H.; Afanasjev, A. V.; Brown, E. F.; Deibel, A.; Gasques, L. R.; Hitt, G. W.; Hix, W. R.; Keek, L.; Möller, P.; Shternin, P. S.; Steiner, A. W.; Wiescher, M.; Xu, Y.

2018-05-01

X-ray observations of transiently accreting neutron stars during quiescence provide information about the structure of neutron star crusts and the properties of dense matter. Interpretation of the observational data requires an understanding of the nuclear reactions that heat and cool the crust during accretion and define its nonequilibrium composition. We identify here in detail the typical nuclear reaction sequences down to a depth in the inner crust where the mass density is ρ =2× {10}12 {{g}} {cm}}-3 using a full nuclear reaction network for a range of initial compositions. The reaction sequences differ substantially from previous work. We find a robust reduction of crust impurity at the transition to the inner crust regardless of initial composition, though shell effects can delay the formation of a pure crust somewhat to densities beyond ρ =2× {10}12 {{g}} {cm}}-3. This naturally explains the small inner crust impurity inferred from observations of a broad range of systems. The exception are initial compositions with A ≥ 102 nuclei, where the inner crust remains impure with an impurity parameter of Q imp ≈ 20 owing to the N = 82 shell closure. In agreement with previous work, we find that nuclear heating is relatively robust and independent of initial composition, while cooling via nuclear Urca cycles in the outer crust depends strongly on initial composition. This work forms a basis for future studies of the sensitivity of crust models to nuclear physics and provides profiles of composition for realistic crust models.

Comparisons of Anvil Cirrus Spatial Characteristics between Airborne Observations in DC3 Campaign and WRF Simulations

NASA Astrophysics Data System (ADS)

D'Alessandro, J.; Diao, M.; Chen, M.

2015-12-01

John D'Alessandro1, Minghui Diao1, Ming Chen2, George Bryan2, Hugh Morrison21. Department of Meteorology and Climate Science, San Jose State University2. Mesoscale & Microscale Meteorology Division, National Center for Atmospheric Research, Boulder, CO, 80301 Ice crystal formation requires the prerequisite condition of ice supersaturation, i.e., relative humidity with respect to ice (RHi) greater than 100%. The formation and evolution of ice supersaturated regions (ISSRs) has large impact on the subsequent formation of ice clouds. To examine the characteristics of simulated ice supersaturated regions at various model spatial resolutions, case studies between airborne in-situ measurements in the NSF Deep Convective, Clouds and Chemistry (DC3) campaign (May - June 2012) and WRF simulations are conducted in this work. Recent studies using ~200 m in-situ observations showed that ice supersaturated regions are mostly around 1 km in horizontal scale (Diao et al. 2014). Yet it is still unclear if such observed characteristics can be represented by WRF simulations at various spatial resolutions. In this work, we compare the WRF simulated anvil cirrus spatial characteristics with those observed in the DC3 campaign over the southern great plains in US. The WRF model is run at 1 km and 3 km horizontal grid spacing with a recent update of Thompson microphysics scheme. Our comparisons focus on the spatial characteristics of ISSRs and cirrus clouds, including the distributions of their horizontal scales, the maximum relative humidity with respect to ice (RHi) and the relationship between RHi and temperature. Our previous work on the NCAR CM1 cloud-resolving model shows that the higher resolution runs (i.e., 250m and 1km) generally have better agreement with observations than the coarser resolution (4km) runs. We will examine if similar trend exists for WRF simulations in deep convection cases. In addition, we will compare the simulation results between WRF and CM1, particularly for spatial correlations between ISSRs and cirrus and their evolution (based on the method of Diao et al. 2013). Overall, our work will help to assess the representation of ISSRs and cirrus in WRF simulation based on comparisons with in-situ observations.

Chemistry and Mineralogy of Antarctica Dry Valley Soils: Implications for Mars

NASA Technical Reports Server (NTRS)

Quinn, J. E.; Golden, D. C.; Graff, T. G.; Ming, D. W.; Morris, R. V.; Douglas, S.; Kounaves, S. P.; McKay, C. P.; Tamppari, L, K.; Smith, P. H.;

Copernicus observations of C I and CO in diffuse interstellar clouds

NASA Technical Reports Server (NTRS)

Jenkins, E. B.; Jura, M.; Loewenstein, M.

1980-01-01

Copernicus was used to observe absorption lines of C I in its ground state and excited fine structure levels and CO toward 29 stars. We use the C I data to infer densities and pressures within the observed clouds, and because our results are of higher precision than previous work, much more precise estimates of the physical conditions in clouds are obtained. In agreement with previous work, the interstellar thermal pressure appears to be variable, with most clouds having values of p/k between 1000/cu cm K and 10,000/cu cm K, but there are some clouds with p/k as high as 100,000/cu cm K. Our results are consistent with the view that the interstellar thermal pressure is so variable that the gas undergoes continuous dynamic evolution. Our observations provide useful constraints on the physical processes on the surfaces of grains. In particular, we find that grains are efficient catalysts of interstellar H2 in the sense that at least half of the hydrogen atoms that strike grains come off as part of H2. Results place strong constraints on models for the formation and destruction of interstellar CO. In many clouds, an order of magnitude less CO than predicted in some models was found.

A comparative analysis of dynamic grids vs. virtual grids using the A3pviGrid framework.

PubMed

Shankaranarayanan, Avinas; Amaldas, Christine

2010-11-01

With the proliferation of Quad/Multi-core micro-processors in mainstream platforms such as desktops and workstations; a large number of unused CPU cycles can be utilized for running virtual machines (VMs) as dynamic nodes in distributed environments. Grid services and its service oriented business broker now termed cloud computing could deploy image based virtualization platforms enabling agent based resource management and dynamic fault management. In this paper we present an efficient way of utilizing heterogeneous virtual machines on idle desktops as an environment for consumption of high performance grid services. Spurious and exponential increases in the size of the datasets are constant concerns in medical and pharmaceutical industries due to the constant discovery and publication of large sequence databases. Traditional algorithms are not modeled at handing large data sizes under sudden and dynamic changes in the execution environment as previously discussed. This research was undertaken to compare our previous results with running the same test dataset with that of a virtual Grid platform using virtual machines (Virtualization). The implemented architecture, A3pviGrid utilizes game theoretic optimization and agent based team formation (Coalition) algorithms to improve upon scalability with respect to team formation. Due to the dynamic nature of distributed systems (as discussed in our previous work) all interactions were made local within a team transparently. This paper is a proof of concept of an experimental mini-Grid test-bed compared to running the platform on local virtual machines on a local test cluster. This was done to give every agent its own execution platform enabling anonymity and better control of the dynamic environmental parameters. We also analyze performance and scalability of Blast in a multiple virtual node setup and present our findings. This paper is an extension of our previous research on improving the BLAST application framework using dynamic Grids on virtualization platforms such as the virtual box.

Hot gas, cold gas and sub-haloes in a Lyman α blob at redshift 2.38

NASA Astrophysics Data System (ADS)

Francis, Paul. J.; Dopita, Michael A.; Colbert, James W.; Palunas, Povilas; Scarlata, Claudia; Teplitz, Harry; Williger, Gerard M.; Woodgate, Bruce E.

2013-01-01

We present integral field spectroscopy of a Lyman α blob at redshift 2.38, with a spectral resolution three times better than previous published work. As with previous observations, the blob has a chaotic velocity structure, much of which breaks up into multiple components. Our spectroscopy shows, however, that some of these multiple components are extremely narrow: they have velocity widths of less than 100 km s- 1. Combining these new data with previous observations, we argue that this Lyman α blob resides in a dark matter halo of around 1013 M⊙. At the centre of this halo are two compact red massive galaxies. They are surrounded by hot gas, probably a superwind from merger-induced nuclear starbursts. This hot gas has shut down star formation in the non-nuclear region of these galaxies, leading to their red-and-dead colours. A filament or lump of infalling cold gas is colliding with the hot gas phase and being shocked to high temperatures, while still around 30 kpc from the red galaxies. The shock region is self-absorbed in Lyman α but produces C iv emission. Further out still, the cold gas in a number of sub-haloes is being lit up, most likely by a combination of tidally triggered star formation, bow shocks as they plough through the hot halo medium, resonant scattering of Lyman α from the filament collision and tidal stripping of gas which enhances the Lyman α escape fraction. The observed Lyman α emission from the blob is dominated by the sum of the emission from these sub-haloes. On statistical grounds, we argue that Lyman α blobs are not greatly elongated in shape and that most are not powered by ionization or scattering from a central active galactic nucleus or starburst.

Rapid magnetosome formation shown by real-time x-ray magnetic circular dichroism.

PubMed

Staniland, Sarah; Ward, Bruce; Harrison, Andrew; van der Laan, Gerrit; Telling, Neil

2007-12-04

Magnetosomes are magnetite nanoparticles formed by biomineralization within magnetotactic bacteria. Although there have been numerous genetic and proteomic studies of the magnetosome-formation process, there have been only limited and inconclusive studies of mineral-phase evolution during the formation process, and no real-time studies of such processes have yet been performed. Thus, suggested formation mechanisms still need substantiating with data. Here we report the examination of the magnetosome material throughout the formation process in a real-time in vivo study of Magnetospirillum gryphiswaldense, strain MSR-1. Transmission EM and x-ray absorption spectroscopy studies reveal that full-sized magnetosomes are seen 15 min after formation is initiated. These immature magnetosomes contain a surface layer of the nonmagnetic iron oxide-phase hematite. Mature magnetite is found after another 15 min, concurrent with a dramatic increase in magnetization. This rapid formation result is contrary to previously reported studies and discounts the previously proposed slow, multistep formation mechanisms. Thus, we conclude that the biomineralization of magnetite occurs rapidly in magnetotactic bacteria on a similar time scale to high-temperature chemical precipitation reactions, and we suggest that this finding is caused by a biological catalysis of the process.

The Comparison of Detrital Zircon Ages to Point Count Provenance Analysis for the Pottsville Sandstone in the Northern Appalachian Foreland Basin Venango County, Pennsylvania

NASA Astrophysics Data System (ADS)

Loveday, S.; Harris, D. B.; Schiappa, T.; Pecha, M.

2017-12-01

The specific sources of sediments deposited in the Appalachian basin prior to and immediately following the Alleghenian orogeny has long been a topic of debate. Recent advances in U-Pb dating of detrital zircons have greatly helped to determine some of the sources of these sediments. For this study, sandstone samples were collected from the Pottsville Formation in the northern Appalachian Foreland Basin, Venango County, Pennsylvania to provide supplementary data for previous work that sought to describe the provenance of the same sediments by point counts of thin sections of the same units. Results of this previous work established that the provenance for these units was transitional recycled orogenic, including multiple recycled sediments, and that a cratonic contribution was not able to be determined clearly. The previous results suggested that the paleoenvironment was a fluvial dominated delta prograding in the northern direction. However, no geochronologic data was found during this study to confirm this interpretation. We sought to verify these results by U-Pb analysis of detrital zircons. Samples were collected from the areas where the previous research took place. U-Pb ages were found from sample at the highest elevation and lowest elevation. In the first sample, sample 17SL01 (younger sample stratigraphically), the zircons yield U-Pb age range peaks at 442-468 ma and 1037-1081 ma. The probability density plot for this specific sample displays a complete age gap from 500 ma to 811 ma. In the second sample, sample 17SL03 (older rock stratigraphically), the zircons yield U-Pb ages range peaks of 424-616 ma and 975-1057 ma. This sample doesn't show any ages younger than 424 ma and it doesn't display the sample age gap as sample 17SL01 does. The ages of zircons are consistent with thin section point counting provenance results from previous research suggesting zircon transport from the northern direction.

Ubiquilin/Dsk2 promotes inclusion body formation and vacuole (lysosome)-mediated disposal of mutated huntingtin.

PubMed

Chuang, Kun-Han; Liang, Fengshan; Higgins, Ryan; Wang, Yanchang

2016-07-01

Ubiquilin proteins contain a ubiquitin-like domain (UBL) and ubiquitin-associated domain(s) that interact with the proteasome and ubiquitinated substrates, respectively. Previous work established the link between ubiquilin mutations and neurodegenerative diseases, but the function of ubiquilin proteins remains elusive. Here we used a misfolded huntingtin exon I containing a 103-polyglutamine expansion (Htt103QP) as a model substrate for the functional study of ubiquilin proteins. We found that yeast ubiquilin mutant (dsk2Δ) is sensitive to Htt103QP overexpression and has a defect in the formation of Htt103QP inclusion bodies. Our evidence further suggests that the UBL domain of Dsk2 is critical for inclusion body formation. Of interest, Dsk2 is dispensable for Htt103QP degradation when Htt103QP is induced for a short time before noticeable inclusion body formation. However, when the inclusion body forms after a long Htt103QP induction, Dsk2 is required for efficient Htt103QP clearance, as well as for autophagy-dependent delivery of Htt103QP into vacuoles (lysosomes). Therefore our data indicate that Dsk2 facilitates vacuole-mediated clearance of misfolded proteins by promoting inclusion body formation. Of importance, the defect of inclusion body formation in dsk2 mutants can be rescued by human ubiquilin 1 or 2, suggesting functional conservation of ubiquilin proteins. © 2016 Chuang et al. This article is distributed by The American Society for Cell Biology under license from the author(s). Two months after publication it is available to the public under an Attribution–Noncommercial–Share Alike 3.0 Unported Creative Commons License (http://creativecommons.org/licenses/by-nc-sa/3.0).

Phase, composition, and growth mechanism for secondary organic aerosol from the ozonolysis of α-cedrene

NASA Astrophysics Data System (ADS)

Zhao, Yue; Wingen, Lisa M.; Perraud, Véronique; Finlayson-Pitts, Barbara J.

2016-03-01

Sesquiterpenes are an important class of biogenic volatile organic compounds (BVOCs) and have a high secondary organic aerosol (SOA) forming potential. However, SOA formation from sesquiterpene oxidation has received less attention compared to other BVOCs such as monoterpenes, and the underlying mechanisms remain poorly understood. In this work, we present a comprehensive experimental investigation of the ozonolysis of α-cedrene both in a glass flow reactor (27-44 s reaction times) and in static Teflon chambers (30-60 min reaction times). The SOA was collected by impaction or filters, followed by analysis using attenuated total reflectance Fourier transform infrared (ATR-FTIR) spectroscopy and electrospray ionization mass spectrometry (ESI-MS), or measured online using direct analysis in real-time mass spectrometry (DART-MS) and aerosol mass spectrometry (AMS). The slow evaporation of 2-ethylhexyl nitrate that was incorporated into the SOA during its formation and growth gives an estimated diffusion coefficient of 3 × 10-15 cm2 s-1 and shows that SOA is a highly viscous semisolid. Possible structures of four newly observed low molecular weight (MW ≤ 300 Da) reaction products with higher oxygen content than those previously reported were identified. High molecular weight (HMW) products formed in the early stages of the oxidation have structures consistent with aldol condensation products, peroxyhemiacetals, and esters. The size-dependent distributions of HMW products in the SOA, as well as the effects of stabilized Criegee intermediate (SCI) scavengers on HMW products and particle formation, confirm that HMW products and reactions of SCI play a crucial role in early stages of particle formation. Our studies provide new insights into mechanisms of SOA formation and growth in α-cedrene ozonolysis and the important role of sesquiterpenes in new particle formation as suggested by field measurements.

Phase, composition and growth mechanism for secondary organic aerosol from the ozonolysis of α-cedrene

NASA Astrophysics Data System (ADS)

Zhao, Y.; Wingen, L. M.; Perraud, V.; Finlayson-Pitts, B. J.

2015-12-01

Sesquiterpenes are an important class of biogenic volatile organic compounds (BVOCs) and have a high secondary organic aerosol (SOA) forming potential. However, SOA formation from sesquiterpene oxidation has received less attention compared to other BVOCs such as monoterpenes, and the underlying mechanisms remain poorly understood. In this work, we present a comprehensive experimental investigation of the ozonolysis of α-cedrene both in a glass flow reactor (27-44 s reaction times) and in static Teflon chambers (30-60 min reaction times). The SOA was collected by impaction or filters, followed by analysis using attenuated total reflectance-Fourier transform infrared spectroscopy (ATR-FTIR) and electrospray ionization mass spectrometry (ESI-MS), or measured on line using direct analysis in real time (DART-MS) and aerosol mass spectrometry (AMS). The slow evaporation of 2-ethylhexyl nitrate that was incorporated into the SOA during its formation and growth gives an estimated diffusion coefficient of 3 × 10-15 cm2 s-1 and shows that SOA is a highly viscous semi-solid. Possible structures of four newly observed low molecular weight (MW ≤ 300 Da) reaction products with higher oxygen content than those previously reported were identified. High molecular weight (HMW) products formed in the early stages of the oxidation have structures consistent with aldol condensation products, peroxyhemiacetals, and esters. The size-dependent distributions of HMW products in the SOA, as well as the effects of stabilized Criegee intermediate (SCI) scavengers on HMW products and particle formation, confirm that HMW products and reactions of Criegee intermediates play a crucial role in early stages of particle formation. Our studies provide new insights into mechanisms of SOA formation and growth in α-cedrene ozonolysis and the important role of sesquiterpenes in new particle formation as suggested by field measurements.

The effects of salt, particle and pore size on the process of carbon dioxide hydrate formation: A critical review

NASA Astrophysics Data System (ADS)

Ghaedi, Hosein; Ayoub, Muhammad; Bhat, A. H.; Mahmood, Syed Mohammad; Akbari, Saeed; Murshid, Ghulam

2016-11-01

Hydration is an alternative method for CO2 capture. In doing so, some researchers use porous media on an experimental scale. This paper tries to gather the researches on the formation of CO2 hydrate in different types of porous media such as silica sand, quartz sand, Toyoura, pumice, and fire hardened red clay. This review has attempted to examine the effects of salt and particle sizes as two major factors on the induction time, water to hydrate conversion, gas uptake (or gas consumption), and the rate of CO2 hydrate formation. By performing a critical assessment of previous research works, it was observed that the figure for the gas uptake (or gas consumption) and water to hydrate conversion in porous media was decreased by increasing the particle size provided that the pore size was constant. Although, salt can play a role in hydrate formation as the thermodynamic inhibitor, the results show that salt can be regarded as the kinetic growth inhibitor and kinetic promoter. Because of the fact that the gas uptake in seawater is lower than pure water at the end of experiment, the salt can act as a kinetic growth inhibitor. However, since gas uptake (after the nucleation period and for a short period) and the initial rate of hydrate formation in saline water were more than that of pure water, salt can play a promoter role in the kinetic reaction, too. Besides these, in the case of pure water and within a certain particle size, the amount of the hydrate formation rate has been seen to be greater in smaller particles (provided that the pore size is constant), however this has not been observed for seawater.

Detection in vivo of a Novel Endogenous Etheno DNA Adduct Derived from Arachidonic Acid and the Effects of Antioxidants on Its Formation

PubMed Central

Cruz, Idalia M.; Pondicherry, Sharanya R.; Fernandez, Aileen; Schultz, Casey L.; Yang, Peiying; Pan, Jishen; Desai, Dhimant; Krzeminski, Jacek; Amin, Shantu; Christov, Plamen P.; Hara, Yukihiko; Chung, Fung-Lung

2014-01-01

Previous studies showed that the 7-(1′,2′-dihydroxyheptyl) substituted etheno DNA adducts are products from reactions with epoxide of (E)-4-hydroxy-2-nonenal (HNE), an oxidation product of ω-6 polyunsaturated fatty acids (PUFAs). In this work, we report the detection of 7-(1′,2′-dihydroxyheptyl)-1,N6-ethenodeoxyadenosine (DHHedA) in rodent and human tissues by two independent methods: a 32P-postlabeling/HPLC method and an isotope dilution liquid chromatography electrospray ionization tandem mass spectrometry method (ID-LC-ESI-MS/MS), demonstrating for the first time that DHHedA is a background DNA lesion in vivo. We showed that DHHedA can be formed upon incubation of arachidonic acid (AA) with deoxyadenosine (dA), supporting the notion that ω-6 PUFAs are the endogenous source of DHHedA formation. Because cyclic adducts are derived from the oxidation of PUFAs, we subsequently examined the effects of antioxidants, α-lipoic acid, Polyphenon E and vitamin E, on the formation of DHHedA and γ-hydroxy-1,N2-propanodeoxyguanosine (γ-OHPdG), a widely studied acrolein-derived adduct arising from oxidized PUFAs, in the livers of Long Evans Cinnamon (LEC) rats. LEC rats are inflicted with elevated lipid peroxidation and prone to the development of hepatocellular carcinomas. The results showed that while the survival of LEC rats increased significantly by α-lipoic acid, none of the antioxidants inhibited the formation of DHHedA and only Polyphenon E decreased the formation of γ-OHPdG. In contrast, vitamin E caused a significant increase in the formation of both γ-OHPdG and DHHedA in the livers of LEC rats. PMID:24816294

The Average Star Formation Histories of Galaxies in Dark Matter Halos from z = 0-8

NASA Astrophysics Data System (ADS)

Behroozi, Peter S.; Wechsler, Risa H.; Conroy, Charlie

2013-06-01

We present a robust method to constrain average galaxy star formation rates (SFRs), star formation histories (SFHs), and the intracluster light (ICL) as a function of halo mass. Our results are consistent with observed galaxy stellar mass functions, specific star formation rates (SSFRs), and cosmic star formation rates (CSFRs) from z = 0 to z = 8. We consider the effects of a wide range of uncertainties on our results, including those affecting stellar masses, SFRs, and the halo mass function at the heart of our analysis. As they are relevant to our method, we also present new calibrations of the dark matter halo mass function, halo mass accretion histories, and halo-subhalo merger rates out to z = 8. We also provide new compilations of CSFRs and SSFRs; more recent measurements are now consistent with the buildup of the cosmic stellar mass density at all redshifts. Implications of our work include: halos near 1012 M ⊙ are the most efficient at forming stars at all redshifts, the baryon conversion efficiency of massive halos drops markedly after z ~ 2.5 (consistent with theories of cold-mode accretion), the ICL for massive galaxies is expected to be significant out to at least z ~ 1-1.5, and dwarf galaxies at low redshifts have higher stellar mass to halo mass ratios than previous expectations and form later than in most theoretical models. Finally, we provide new fitting formulae for SFHs that are more accurate than the standard declining tau model. Our approach places a wide variety of observations relating to the SFH of galaxies into a self-consistent framework based on the modern understanding of structure formation in ΛCDM. Constraints on the stellar mass-halo mass relationship and SFRs are available for download online.

Formation of the Thiol Conjugates and Active Metabolite of Clopidogrel by Human Liver Microsomes

PubMed Central

Lau, Wei C.; Hollenberg, Paul F.

2012-01-01

We reported previously the formation of a glutathionyl conjugate of the active metabolite (AM) of clopidogrel and the covalent modification of a cysteinyl residue of human cytochrome P450 2B6 in a reconstituted system (Mol Pharmacol 80:839–847, 2011). In this work, we extended our studies of the metabolism of clopidogrel to human liver microsomes in the presence of four reductants, namely, GSH, l-Cys, N-acetyl-l-cysteine (NAC), and ascorbic acid. Our results demonstrated that formation of the AM was greatly affected by the reductant used and the relative amounts of the AM formed were increased in the following order: NAC (17%) < l-Cys (53%) < ascorbic acid (61%) < GSH (100%). AM-thiol conjugates were observed in the presence of NAC, l-Cys, and GSH. In the case of GSH, the formation of both the AM and the glutathionyl conjugate was dependent on the GSH concentrations, with similar Km values of ∼0.5 mM, which indicates that formation of the thiol conjugates constitutes an integral part of the bioactivation processes for clopidogrel. It was observed that the AM was slowly converted to the thiol conjugate, with a half-life of ∼10 h. Addition of dithiothreitol to the reaction mixture reversed the conversion, which resulted in a decrease in AM-thiol conjugate levels and a concomitant increase in AM levels, whereas addition of NAC led to the formation of AM-NAC and a concomitant decrease in AM-GSH levels. These results not only confirm that the AM is formed through oxidative opening of the thiolactone ring but also suggest the existence of an equilibrium between the AM, the thiol conjugates, and the reductants. These factors may affect the effective concentrations of the AM in vivo. PMID:22584220

The Role of Amodal Surface Completion in Stereoscopic Transparency

PubMed Central

Anderson, Barton L.; Schmid, Alexandra C.

2012-01-01

Previous work has shown that the visual system can decompose stereoscopic textures into percepts of inhomogeneous transparency. We investigate whether this form of layered image decomposition is shaped by constraints on amodal surface completion. We report a series of experiments that demonstrate that stereoscopic depth differences are easier to discriminate when the stereo images generate a coherent percept of surface color, than when images require amodally integrating a series of color changes into a coherent surface. Our results provide further evidence for the intimate link between the segmentation processes that occur in conditions of transparency and occlusion, and the interpolation processes involved in the formation of amodally completed surfaces. PMID:23060829

Blow-up solutions for L 2 supercritical gKdV equations with exactly k blow-up points

NASA Astrophysics Data System (ADS)

Lan, Yang

2017-08-01

In this paper we consider the slightly L 2-supercritical gKdV equations \\partialt u+(uxx+u\\vert u\\vert p-1)_x=0 , with the nonlinearity 5 and 0<\\varepsilon\\ll 1 . In the previous work of the author, we know that there exists a stable self-similar blow-up dynamics for slightly L 2-supercritical gKdV equations. Such solutions can be viewed as solutions with a single blow-up point. In this paper we will prove the existence of solutions with multiple blow-up points, and give a description of the formation of the singularity near the blow-up time.

Effect of the nano-oxide layer as a Mn diffusion barrier in specular spin valves

NASA Astrophysics Data System (ADS)

Jang, S. H.; Kang, T.; Kim, H. J.; Kim, K. Y.

2002-07-01

In previous work an enhanced giant magnetoresistance (GMR) effect in spin valves (SVs) with a nano-oxide layer (NOL) after annealing at about 250-300 degC has been reported. We have shown that SVs with a NOL also have higher thermal stability of the MR ratio at 300 degC. From secondary-ion-mass spectroscopy and x-ray photoelectron spectroscopy depth profile analysis, the mechanism of the improved thermal stability of the SVs with a NOL is shown to be related to MnO formation within the NOL. Thus, Mn atoms from the FeMn layer are trapped, and Mn diffusion is inhibited by the NOL during annealing.

Miniature whirlwinds produced in the laboratory by high-voltage electrical discharges.

PubMed

Ryan, R T; Vonnegut, B

1970-06-12

Laboratory experiments showed that under certain conditions of vorticity the electrical heatinig produced by a high-voltage discharge at atmospheric pressure can cause the formation of a miniature tornado-like vortex. Once it forms, this vortex stabilizes the electrical discharge along its axis and changes its character from that of a spark to high-pressure variety of a glow discharge. Electrical and dynamic parameters were measured. By relating observations and measurements made in these experiments to previous work and to analogous situations in nature, it is concluded that the heating produced by electrical discharges in a large storm may play a significant role in forming and maintaining natural tornadoes.

A CO2-rich coma model applied to the neutral coma of Comet West

NASA Technical Reports Server (NTRS)

Mitchell, G. F.; Swift, M. B.; Huntress, W. T.

1982-01-01

Models of the cometary coma in which the dominant volatile is CO2 have been constructed for a range of heliocentric distances. Model coma abundances of C2, C3, and CN are compared with the abundances observed in Comet West and are found to be in good agreement. Furthermore, the variation with heliocentric distance of C2, C3, and CN model abundances agree well with the observed variation in Comet West. The present work lends detailed support to a previous suggestion that a substance more volatile than water, such as CO2, controls the evaporation of the nucleus of Comet West. The implications for cometary formation are briefly discussed.

The Size Frequency Distribution of Small Main-Belt Asteroids

NASA Technical Reports Server (NTRS)

Burt, Brian J.; Trilling, David E.; Hines, Dean C.; Stapelfeldt, Karl R.; Rebull, Luisa M.; Fuentes, Cesar I.; Hulsebus, Alan

2012-01-01

The asteroid size distribution informs us about the formation and composition of the Solar System. We build on our previous work in which we harvest serendipitously observed data of the Taurus region and measure the brightness and size distributions of Main-belt asteroids. This is accomplished with the highly sensitive MIPS 24 micron channel. We expect to catalog 104 asteroids, giving us a statistically significant data set. Results from this investigation will allow us to characterize the total population of small, Main-belt asteroids. Here we will present new results on the completeness of our study; on the presence of size distribution variations with inclination and radial distance in the belt; and early result on other archival fields.

THE ROLE OF GAS-PHASE CL2 IN THE FORMATION OF PCDD/PCDF DURING WASTE COMBUSTION

EPA Science Inventory

Results of previous experiments investigating formation of polychlorinated dibenzo-p-dioxins/dibenzofurans (PCDD/PCDF) through low-temperature (300°C), fly-ash-catalyzed reactions are demonstrated to have occurred through intermediate formation of gas-phase Cl₂ by deco...

Modeling Well Sampled Composite Spectral Energy Distributions of Distant Galaxies via an MCMC-driven Inference Framework

NASA Astrophysics Data System (ADS)

Pasha, Imad; Kriek, Mariska; Johnson, Benjamin; Conroy, Charlie

2018-01-01

Using a novel, MCMC-driven inference framework, we have modeled the stellar and dust emission of 32 composite spectral energy distributions (SEDs), which span from the near-ultraviolet (NUV) to far infrared (FIR). The composite SEDs were originally constructed in a previous work from the photometric catalogs of the NEWFIRM Medium-Band Survey, in which SEDs of individual galaxies at 0.5 < z < 2.0 were iteratively matched and sorted into types based on their rest-frame UV-to-NIR photometry. In a subsequent work, MIPS 24 μm was added for each SED type, and in this work, PACS 100 μm, PACS160 μm, SPIRE 25 μm, and SPIRE 350 μm photometry have been added to extend the range of the composite SEDs into the FIR. We fit the composite SEDs with the Prospector code, which utilizes an MCMC sampling to explore the parameter space for models created by the Flexible Stellar Population Synthesis (FSPS) code, in order to investigate how specific star formation rate (sSFR), dust temperature, and other galaxy properties vary with SED type.This work is also being used to better constrain the SPS models within FSPS.

Pressure effect on dissimilatory sulfate reduction

NASA Astrophysics Data System (ADS)

Williamson, A. J.; Carlson, H. K.; Coates, J. D.

2015-12-01

Biosouring is the production of H2S by sulfate reducing microorganisms (SRM) in-situ or in the produced fluids of oil reservoirs. Sulfide is explosive, toxic and corrosive which can trigger equipment and transportation failure, leading to environmental catastrophe. As oil exploration and reservoir development continue, subsequent enhanced recovery is occurring in progressively deeper formations and typical oil reservoir pressures range from 10-50 MPa. Therefore, an understanding of souring control effects will require an accurate understanding of the influence of pressure on SRM metabolism and the efficacy of souring control treatments at high pressure. Considerable work to date has focussed on souring control at ambient pressure; however, the influence of pressure on biogeochemical processes and souring treatments in oil reservoirs is poorly understood. To explore the impact of pressure on SRM, wild type Desulfovibrio alaskensis G20 (isolated from a producing oil well in Ventura County, California) was grown under a range of pressures (0.1-14 MPa) at 30 °C. Complete sulfate reduction occurred in all pressures tested within 3 days, but microbial growth was inhibited with increasing pressure. Bar-seq identified several genes associated with flagella biosynthesis (including FlhB) and assembly as important for survival at elevated pressure and fitness was confirmed using individual transposon mutants. Flagellar genes have previously been implicated with biofilm formation and confocal microscopy on glass slides incubated with wild type D. alaskensis G20 showed more biomass associated with surfaces under pressure, highlighting the link between pressure, flagellar and biofilm formation. To determine the effect of pressure on the efficacy of SRM inhibitors, IC50 experiments were conducted and D. alaskensis G20 showed a greater resistance to nitrate and the antibiotic chloramphenicol, but a lower resistance to perchlorate. These results will be discussed in the context of deep subsurface microbiology and oil reservoir biosouring. Overall, this work furthers our understanding of oil reservoir biogeochemistry and highlights the impact of pressure on biofilm formation and biosouring strategies.

Sugar Radical Formation by a Proton Coupled Hole Transfer in 2′-Deoxyguanosine Radical Cation (2′-dG•+): A Theoretical Treatment

PubMed Central

Kumar, Anil; Sevilla, Michael D.

2009-01-01

Previous experimental and theoretical work has established that electronic excitation of a guanine cation radical in nucleosides or in DNA itself leads to sugar radical formation by deprotonation from the dexoxyribose sugar. In this work we investigate a ground electronic state pathway for such sugar radical formation in a hydrated one electron oxidized 2′-deoxyguanosine (dG•+ + 7H2O), using density functional theory (DFT) with the B3LYP functional and the 6-31G* basis set. We follow the stretching of the C5′-H bond in dG•+ to gain an understanding of the energy requirements to transfer the hole from the base to sugar ring and then to deprotonate to proton acceptor sites in solution and on the guanine ring. The geometries of reactant (dG•+ + 7H2O), transition state (TS) for deprotonation of C5′ site and product (dG(•C5′, N7-H+) + 7 H2O) were fully optimized. The zero point energy (ZPE) corrected activation energy (TS) for the proton transfer (PT) from C5′ is calculated to be 9.0 kcal/mol and is achieved by stretching the C5′-H bond by 0.13 Å from its equilibrium bond distance (1.099 Å). Remarkably, this small bond stretch is sufficient to transfer the “hole” (positive charge and spin) from guanine to the C5′ site on the deoxyribose group. Beyond the TS, the proton (H+) spontaneously adds to water to form a hydronium ion (H3O+) as an intermediate. The proton subsequently transfers to the N7 site of the guanine (product). The 9 kcal/mol barrier suggests slow thermal conversion of the cation radical to the sugar radical but also suggests that localized vibrational excitations would be sufficient to induce rapid sugar radical formation in DNA base cation radicals. PMID:19754084

Introducing ADES: A New IAU Astrometry Data Exchange Standard

NASA Astrophysics Data System (ADS)

Chesley, Steven R.; Hockney, George M.; Holman, Matthew J.

2017-10-01

For several decades, small body astrometry has been exchanged, distributed and archived in the form of 80-column ASCII records. As a replacement for this obsolescent format, we have worked with a number of members of the community to develop the Astrometric Data Exchange Standard (ADES), which was formally adopted by IAU Commission 20 in August 2015 at the XXIX General Assembly in Honolulu, Hawaii.The purpose of ADES is to ensure that useful and available observational information is submitted, archived, and disseminated as needed. Availability of more complete information will allow orbit computers to process the data more correctly, leading to improved accuracy and reliability of orbital fits. In this way, it will be possible to fully exploit the improving accuracy and increasing number of both optical and radar observations. ADES overcomes several limitations of the previous format by allowing characterization of astrometric and photometric errors, adequate precision in time and angle fields, and flexibility and extensibility.To accommodate a diverse base of users, from automated surveys to hands-on follow-up observers, the ADES protocol allows for two file formats, eXtensible Markup Language (XML) and Pipe-Separated Values (PSV). Each format carries the same information and simple tools allow users to losslessly transform back and forth between XML and PSV.We have further developed and refined ADES since it was first announced in July 2015 [1]. The proposal at that time [2] has undergone several modest revisions to aid validation and avoid overloaded fields. We now have validation schema and file transformation utilities. Suitable example files, test suites, and input/output libraries in a number of modern programming languages are now available. Acknowledgements: Useful feedback during the development of ADES has been received from numerous colleagues in the community of observers and orbit specialists working on asteroids comets and planetary satellites. References: [1] Chesley, S.R. (2015) M.P.E.C. 2015-O06. [2] http://minorplanetcenter.net/iau/ info/IAU2015_ADES.pdf

Tracing the fate of sulfamethoxazole and its metabolites in subsurface: conceptualization and modelling

NASA Astrophysics Data System (ADS)

Rodriguez-Escales, Paula; Sanchez-Vila, Xavier

2016-04-01

The degradation of low adsorptive SMX in subsurface porous media is spatially and temporally variable. It depends on various environmental factors such as in situ redox potential, availability of nutrients, local soil characteristics, and temperature. Its degradation is better under anoxic conditions and by co-metabolism processes. In this work, we first develop a conceptual model of degradation of SMX under different redox conditions (denitrification and iron reducing conditions), characterizing the metabolite formation in each condition, and second, we construct a mathematical model that allows reproducing different experiments of SMX degradation reported in the literature. The model was validated using the experimental data from Barbieri et al. (2012), Nödler et al. (2012) and Mohatt et al. (2011). The model reproduces the reversible degradation of SMX under the presence of nitrous acid as an intermediate product of denitrification (it is the conjugate acid of nitrite), as well as, the metabolite formation (4-nitro-SMX and desamino SMX). In those experiments degradation was mediated by the transient formation of a diazonium cation, which was considered responsible of the substitution of the amine radical by a nitro radical, forming the 4-nitro-SMX. On the other hand, both the diazonium compound and the methanol present in the experiment produced a deamination in the SMX, producing desamino-SMX. The formation of these metabolites was unstable and they were retransformed to SMX. Concerning the iron conditions, SMX was degraded due to the oxidation of iron (Fe2+), which was previously oxidized from goethite due to the degradation of a pool of labile organic carbon. As the oxidation of iron occurred on the goethite surface, the best model to reproduce the SMX reduction was a power law rate. Our work is an attempt to properly formulate the degradation process of an emerging compound considering the real degradation mechanisms, rather than using an upscaled black-box approach based only on the reported concentrations in a given experiment. Acknowledgment: MARSOL FP7-ENV-2013-WATER-INNO-DEMO

Efficient and Extensible Quasi-Explicit Modular Nonlinear Multiscale Battery Model: GH-MSMD

DOE Office of Scientific and Technical Information (OSTI.GOV)

Kim, Gi-Heon; Smith, Kandler; Lawrence-Simon, Jake

Complex physics and long computation time hinder the adoption of computer aided engineering models in the design of large-format battery cells and systems. A modular, efficient battery simulation model -- the multiscale multidomain (MSMD) model -- was previously introduced to aid the scale-up of Li-ion material and electrode designs to complete cell and pack designs, capturing electrochemical interplay with 3-D electronic current pathways and thermal response. Here, this paper enhances the computational efficiency of the MSMD model using a separation of time-scales principle to decompose model field variables. The decomposition provides a quasi-explicit linkage between the multiple length-scale domains andmore » thus reduces time-consuming nested iteration when solving model equations across multiple domains. In addition to particle-, electrode- and cell-length scales treated in the previous work, the present formulation extends to bus bar- and multi-cell module-length scales. We provide example simulations for several variants of GH electrode-domain models.« less

Efficient and Extensible Quasi-Explicit Modular Nonlinear Multiscale Battery Model: GH-MSMD

DOE PAGES

Kim, Gi-Heon; Smith, Kandler; Lawrence-Simon, Jake; ...

2017-03-24

Complex physics and long computation time hinder the adoption of computer aided engineering models in the design of large-format battery cells and systems. A modular, efficient battery simulation model -- the multiscale multidomain (MSMD) model -- was previously introduced to aid the scale-up of Li-ion material and electrode designs to complete cell and pack designs, capturing electrochemical interplay with 3-D electronic current pathways and thermal response. Here, this paper enhances the computational efficiency of the MSMD model using a separation of time-scales principle to decompose model field variables. The decomposition provides a quasi-explicit linkage between the multiple length-scale domains andmore » thus reduces time-consuming nested iteration when solving model equations across multiple domains. In addition to particle-, electrode- and cell-length scales treated in the previous work, the present formulation extends to bus bar- and multi-cell module-length scales. We provide example simulations for several variants of GH electrode-domain models.« less

A new Miocene baleen whale from the Peruvian desert

NASA Astrophysics Data System (ADS)

Marx, Felix G.; Kohno, Naoki

2016-10-01

The Pisco-Ica and Sacaco basins of southern Peru are renowned for their abundance of exceptionally preserved fossil cetaceans, several of which retain traces of soft tissue and occasionally even stomach contents. Previous work has mostly focused on odontocetes, with baleen whales currently being restricted to just three described taxa. Here, we report a new Late Miocene rorqual (family Balaenopteridae), Incakujira anillodefuego gen. et sp. nov., based on two exceptionally preserved specimens from the Pisco Formation exposed at Aguada de Lomas, Sacaco Basin, southern Peru. Incakujira overall closely resembles modern balaenopterids, but stands out for its unusually gracile ascending process of the maxilla, as well as a markedly twisted postglenoid process of the squamosal. The latter likely impeded lateral (omega) rotation of the mandible, in stark contrast with the highly flexible craniomandibular joint of extant lunge-feeding rorquals. Overall, Incakujira expands the still meagre Miocene record of balaenopterids and reveals a previously underappreciated degree of complexity in the evolution of their iconic lunge-feeding strategy.

The Eccentric Satellites Problem: Comparing Milky Way Satellite Orbital Properties to Simulation Results

NASA Astrophysics Data System (ADS)

Haji, Umran; Pryor, Carlton; Applebaum, Elaad; Brooks, Alyson

2018-01-01

We compare the orbital properties of the satellite galaxies of the Milky Way to those of satellites found in simulated Milky Way-like systems as a means of testing cosmological simulations of galaxy formation. The particular problem that we are investigating is a discrepancy in the distribution of orbital eccentricities. Previous studies of Milky Way-mass systems analyzed in a semi-analytic ΛCDM cosmological model have found that the satellites tend to have significantly larger fractions of their kinetic energy invested in radial motion with respect to their central galaxy than do the real-world Milky Way satellites. We analyze several high-resolution ("zoom-in") hydrodynamical simulations of Milky Way-mass galaxies and their associated satellite systems to investigate why previous works found Milky Way-like systems to be rare. We find a possible relationship between a quiescent galactic assembly history and a distribution of satellite kinematics resembling that of the Milky Way. This project has been supported by funding from National Science Foundation grant PHY-1560077.

Exploring the hidden interior of the Earth with directional neutrino measurements

DOE PAGES

Leyton, Michael; Dye, Stephen; Monroe, Jocelyn

2017-07-10

Roughly 40% of the Earth’s total heat flow is powered by radioactive decays in the crust and mantle. Geo-neutrinos produced by these decays provide important clues about the origin, formation and thermal evolution of our planet, as well as the composition of its interior. Previous measurements of geo-neutrinos have all relied on the detection of inverse beta decay reactions, which are insensitive to the contribution from potassium and do not provide model-independent information about the spatial distribution of geo-neutrino sources within the Earth. Here in this paper we present a method for measuring previously unresolved components of Earth’s radiogenic heatingmore » using neutrino-electron elastic scattering and low-background, direction-sensitive tracking detectors.We calculate the exposures needed to probe various contributions to the total geo-neutrino flux, specifically those associated to potassium, the mantle and the core. The measurements proposed here chart a course for pioneering exploration of the veiled inner workings of the Earth.« less

Exploring the hidden interior of the Earth with directional neutrino measurements

DOE Office of Scientific and Technical Information (OSTI.GOV)

Leyton, Michael; Dye, Stephen; Monroe, Jocelyn

Roughly 40% of the Earth’s total heat flow is powered by radioactive decays in the crust and mantle. Geo-neutrinos produced by these decays provide important clues about the origin, formation and thermal evolution of our planet, as well as the composition of its interior. Previous measurements of geo-neutrinos have all relied on the detection of inverse beta decay reactions, which are insensitive to the contribution from potassium and do not provide model-independent information about the spatial distribution of geo-neutrino sources within the Earth. Here in this paper we present a method for measuring previously unresolved components of Earth’s radiogenic heatingmore » using neutrino-electron elastic scattering and low-background, direction-sensitive tracking detectors.We calculate the exposures needed to probe various contributions to the total geo-neutrino flux, specifically those associated to potassium, the mantle and the core. The measurements proposed here chart a course for pioneering exploration of the veiled inner workings of the Earth.« less

Exploring the hidden interior of the Earth with directional neutrino measurements

PubMed Central

Leyton, Michael; Dye, Stephen; Monroe, Jocelyn

2017-01-01

Roughly 40% of the Earth’s total heat flow is powered by radioactive decays in the crust and mantle. Geo-neutrinos produced by these decays provide important clues about the origin, formation and thermal evolution of our planet, as well as the composition of its interior. Previous measurements of geo-neutrinos have all relied on the detection of inverse beta decay reactions, which are insensitive to the contribution from potassium and do not provide model-independent information about the spatial distribution of geo-neutrino sources within the Earth. Here we present a method for measuring previously unresolved components of Earth’s radiogenic heating using neutrino-electron elastic scattering and low-background, direction-sensitive tracking detectors. We calculate the exposures needed to probe various contributions to the total geo-neutrino flux, specifically those associated to potassium, the mantle and the core. The measurements proposed here chart a course for pioneering exploration of the veiled inner workings of the Earth. PMID:28691700

Size effects resolve discrepancies in 40 years of work on low-temperature plasticity in olivine

PubMed Central

Kumamoto, Kathryn M.; Thom, Christopher A.; Wallis, David; Hansen, Lars N.; Armstrong, David E. J.; Warren, Jessica M.; Goldsby, David L.; Wilkinson, Angus J.

2017-01-01

The strength of olivine at low temperatures and high stresses in Earth’s lithospheric mantle exerts a critical control on many geodynamic processes, including lithospheric flexure and the formation of plate boundaries. Unfortunately, laboratory-derived values of the strength of olivine at lithospheric conditions are highly variable and significantly disagree with those inferred from geophysical observations. We demonstrate via nanoindentation that the strength of olivine depends on the length scale of deformation, with experiments on smaller volumes of material exhibiting larger yield stresses. This “size effect” resolves discrepancies among previous measurements of olivine strength using other techniques. It also corroborates the most recent flow law for olivine, which proposes a much weaker lithospheric mantle than previously estimated, thus bringing experimental measurements into closer alignment with geophysical constraints. Further implications include an increased difficulty of activating plasticity in cold, fine-grained shear zones and an impact on the evolution of fault surface roughness due to the size-dependent deformation of nanometer- to micrometer-sized asperities. PMID:28924611

Synergistic toughening of composite fibres by self-alignment of reduced graphene oxide and carbon nanotubes.

PubMed

Shin, Min Kyoon; Lee, Bommy; Kim, Shi Hyeong; Lee, Jae Ah; Spinks, Geoffrey M; Gambhir, Sanjeev; Wallace, Gordon G; Kozlov, Mikhail E; Baughman, Ray H; Kim, Seon Jeong

2012-01-31

The extraordinary properties of graphene and carbon nanotubes motivate the development of methods for their use in producing continuous, strong, tough fibres. Previous work has shown that the toughness of the carbon nanotube-reinforced polymer fibres exceeds that of previously known materials. Here we show that further increased toughness results from combining carbon nanotubes and reduced graphene oxide flakes in solution-spun polymer fibres. The gravimetric toughness approaches 1,000 J g(-1), far exceeding spider dragline silk (165 J g(-1)) and Kevlar (78 J g(-1)). This toughness enhancement is consistent with the observed formation of an interconnected network of partially aligned reduced graphene oxide flakes and carbon nanotubes during solution spinning, which act to deflect cracks and allow energy-consuming polymer deformation. Toughness is sensitive to the volume ratio of the reduced graphene oxide flakes to the carbon nanotubes in the spinning solution and the degree of graphene oxidation. The hybrid fibres were sewable and weavable, and could be shaped into high-modulus helical springs.

Elasto-capillarity in insect fibrillar adhesion.

PubMed

Gernay, Sophie; Federle, Walter; Lambert, Pierre; Gilet, Tristan

2016-08-01

The manipulation of microscopic objects is challenging because of high adhesion forces, which render macroscopic gripping strategies unsuitable. Adhesive footpads of climbing insects could reveal principles relevant for micro-grippers, as they are able to attach and detach rapidly during locomotion. However, the underlying mechanisms are still not fully understood. In this work, we characterize the geometry and contact formation of the adhesive setae of dock beetles (Gastrophysa viridula) by interference reflection microscopy. We compare our experimental results to the model of an elastic beam loaded with capillary forces. Fitting the model to experimental data yielded not only estimates for seta adhesion and compliance in agreement with previous direct measurements, but also previously unknown parameters such as the volume of the fluid meniscus and the bending stiffness of the tip. In addition to confirming the primary role of surface tension for insect adhesion, our investigation reveals marked differences in geometry and compliance between the three main kinds of seta tips in leaf beetles. © 2016 The Author(s).

Evolutionary Models of Cold, Magnetized, Interstellar Clouds

NASA Technical Reports Server (NTRS)

Gammie, Charles F.; Ostriker, Eve; Stone, James M.

2004-01-01

We modeled the long-term and small-scale evolution of molecular clouds using direct 2D and 3D magnetohydrodynamic (MHD) simulations. This work followed up on previous research by our group under auspices of the ATP in which we studied the energetics of turbulent, magnetized clouds and their internal structure on intermediate scales. Our new work focused on both global and smallscale aspects of the evolution of turbulent, magnetized clouds, and in particular studied the response of turbulent proto-cloud material to passage through the Galactic spiral potential, and the dynamical collapse of turbulent, magnetized (supercritical) clouds into fragments to initiate the formation of a stellar cluster. Technical advances under this program include developing an adaptive-mesh MHD code as a successor to ZEUS (ATHENA) in order to follow cloud fragmentation, developing a shearing-sheet MHD code which includes self-gravity and externally-imposed gravity to follow the evolution of clouds in the Galactic potential, and developing radiative transfer models to evaluate the internal ionization of clumpy clouds exposed to external photoionizing UV and CR radiation. Gammie's work at UIUC focused on the radiative transfer aspects of this program.

Structuring of Functional Spider Silk Wires, Coatings, and Sheets by Self-Assembly on Superhydrophobic Pillar Surfaces.

PubMed

Gustafsson, Linnea; Jansson, Ronnie; Hedhammar, My; van der Wijngaart, Wouter

2018-01-01

Spider silk has recently become a material of high interest for a large number of biomedical applications. Previous work on structuring of silk has resulted in particles (0D), fibers (1D), films (2D), and foams, gels, capsules, or microspheres (3D). However, the manufacturing process of these structures is complex and involves posttreatment of chemicals unsuitable for biological applications. In this work, the self-assembly of recombinant spider silk on micropatterned superhydrophobic surfaces is studied. For the first time, structuring of recombinant spider silk is achieved using superhydrophobic surfaces under conditions that retain the bioactivity of the functionalized silk. By tuning the superhydrophobic surface geometry and the silk solution handling parameters, this approach allows controlled generation of silk coatings, nanowires, and sheets. The underlying mechanisms and governing parameters are discussed. It is believed that the results of this work pave the way for fabrication of silk formations for applications including vehicles for drug delivery, optical sensing, antimicrobial coatings, and cell culture scaffolds. © 2017 WILEY-VCH Verlag GmbH & Co. KGaA, Weinheim.

Turbulent Collapse of Gravitationally Bound Clouds

NASA Astrophysics Data System (ADS)

Murray, Daniel W.

In this dissertation, I explore the time-variable rate of star formation, using both numerical and analytic techniques. I discuss the dynamics of collapsing regions, the effect of protostellar jets, and development of software for use in the hydrodynamic code RAMSES. I perform high-resolution adaptive mesh refinement simulations of star formation in self-gravitating turbulently driven gas. I have run simulations including hydrodynamics (HD), and HD with protostellar jet feedback. Accretion begins when the turbulent fluctuations on largescales, near the driving scale, produce a converging flow. I find that the character of the collapse changes at two radii, the disk radius rd, and the radius r* where the enclosed gas mass exceeds the stellar mass. This is the first numerical work to show that the density evolves to a fixed attractor, rho(r, t) → rho( r), for rd < r < r*; mass flows through this structure onto a sporadically gravitationally unstable disk, and from thence onto the star. The total stellar mass M*(t) (t - t*)2, where (t - t *)2 is the time elapsed since the formation of the first star. This is in agreement with previous numerical and analytic work that suggests a linear rate of star formation. I show that protostellar jets change the normalization of the stellar mass accretion rate, but do not strongly affect the dynamics of star formation in hydrodynamics runs. In particular, M*(t) infinity (1 - f jet)2(t - t*) 2 is the fraction of mass accreted onto the protostar, where fjet is the fraction ejected by the jet. For typical values of fjet 0.1 - 0.3 the accretion rate onto the star can be reduced by a factor of two or three. However, I find that jets have only a small effect (of order 25%) on the accretion rate onto the protostellar disk (the "raw" accretion rate). In other words, jets do not affect the dynamics of the infall, but rather simply eject mass before it reaches the star. Finally, I show that the small scale structure--the radial density, velocity, and mass accretion profiles--are very similar in the jet and no-jet cases.

New detections of embedded clusters in the Galactic halo

NASA Astrophysics Data System (ADS)

Camargo, D.; Bica, E.; Bonatto, C.

2016-09-01

Context. Until recently it was thought that high Galactic latitude clouds were a non-star-forming ensemble. However, in a previous study we reported the discovery of two embedded clusters (ECs) far away from the Galactic plane (~ 5 kpc). In our recent star cluster catalogue we provided additional high and intermediate latitude cluster candidates. Aims: This work aims to clarify whether our previous detection of star clusters far away from the disc represents just an episodic event or whether star cluster formation is currently a systematic phenomenon in the Galactic halo. We analyse the nature of four clusters found in our recent catalogue and report the discovery of three new ECs each with an unusually high latitude and distance from the Galactic disc midplane. Methods: The analysis is based on 2MASS and WISE colour-magnitude diagrams (CMDs), and stellar radial density profiles (RDPs). The CMDs are built by applying a field-star decontamination procedure, which uncovers the cluster's intrinsic CMD morphology. Results: All of these clusters are younger than 5 Myr. The high-latitude ECs C 932, C 934, and C 939 appear to be related to a cloud complex about 5 kpc below the Galactic disc, under the Local arm. The other clusters are above the disc, C 1074 and C 1100 with a vertical distance of ~3 kpc, C 1099 with ~ 2 kpc, and C 1101 with ~1.8 kpc. Conclusions: According to the derived parameters ECs located below and above the disc occur, which gives evidence of widespread star cluster formation throughout the Galactic halo. This study therefore represents a paradigm shift, by demonstrating that a sterile halo must now be understood as a host for ongoing star formation. The origin and fate of these ECs remain open. There are two possibilities for their origin, Galactic fountains or infall. The discovery of ECs far from the disc suggests that the Galactic halo is more actively forming stars than previously thought. Furthermore, since most ECs do not survive the infant mortality, stars may be raining from the halo into the disc, and/or the halo may be harbouring generations of stars formed in clusters like those detected in our survey.

An N-terminal Retention Module Anchors the Giant Adhesin LapA of Pseudomonas fluorescens at the Cell Surface: A Novel Sub-family of Type I Secretion Systems.

PubMed

Smith, T Jarrod; Font, Maria E; Kelly, Carolyn M; Sondermann, Holger; O'Toole, George A

2018-02-05

LapA of Pseudomonas fluorescens Pf0-1 belongs to a diverse family of cell surface associated bacterial adhesins that are secreted via the type-1 secretion system (T1SS). We previously reported that the periplasmic protease LapG cleaves the N-terminus of LapA at a canonical dialanine motif to release the adhesin from the cell surface under conditions unfavorable to biofilm formation, thus decreasing biofilm formation. Here, we characterize LapA as the first type 1 secreted substrate that does not follow the "one-step" rule of T1SS. Rather, a novel N-terminal element, called the retention module (RM), localizes LapA at the cell surface as a secretion intermediate. Our genetic, biochemical, and molecular modeling analysis support a model wherein LapA is tethered to the cell surface through its T1SS outer membrane TolC-like pore, LapE, until LapG cleaves LapA in the periplasm. We further demonstrate this unusual retention strategy is likely conserved among LapA-like proteins, and reveals a new subclass of T1SS ABC transporters involved in transporting this group of surface-associated, LapA-like adhesins. These studies demonstrate a novel cell surface retention strategy used throughout the Proteobacteria and highlight a previously unappreciated flexibility of function for T1SS. Importance. Bacteria have evolved multiple secretion strategies to interact with their environment. For many bacteria, the secretion of cell surface associated adhesins is key for initiating contact with a preferred substratum to facilitate biofilm formation. Our work demonstrates that P. fluorescens uses a previously unrecognized secretion strategy to retain the giant adhesin LapA at its cell surface. Further, we identify likely LapA-like adhesins in various pathogenic and commensal Proteobacteria and provide phylogenetic evidence that these adhesins are secreted by a new subclass of T1SS ABC transporters. Copyright © 2018 American Society for Microbiology.

RNAi screen of DAF-16/FOXO target genes in C. elegans links pathogenesis and dauer formation.

PubMed

Jensen, Victor L; Simonsen, Karina T; Lee, Yu-Hui; Park, Donha; Riddle, Donald L

2010-12-31

The DAF-16/FOXO transcription factor is the major downstream output of the insulin/IGF1R signaling pathway controlling C. elegans dauer larva development and aging. To identify novel downstream genes affecting dauer formation, we used RNAi to screen candidate genes previously identified to be regulated by DAF-16. We used a sensitized genetic background [eri-1(mg366); sdf-9(m708)], which enhances both RNAi efficiency and constitutive dauer formation (Daf-c). Among 513 RNAi clones screened, 21 displayed a synthetic Daf-c (SynDaf) phenotype with sdf-9. One of these genes, srh-100, was previously identified to be SynDaf, but twenty have not previously been associated with dauer formation. Two of the latter genes, lys-1 and cpr-1, are known to participate in innate immunity and six more are predicted to do so, suggesting that the immune response may contribute to the dauer decision. Indeed, we show that two of these genes, lys-1 and clc-1, are required for normal resistance to Staphylococcus aureus. clc-1 is predicted to function in epithelial cohesion. Dauer formation exhibited by daf-8(m85), sdf-9(m708), and the wild-type N2 (at 27°C) were all enhanced by exposure to pathogenic bacteria, while not enhanced in a daf-22(m130) background. We conclude that knockdown of the genes required for proper pathogen resistance increases pathogenic infection, leading to increased dauer formation in our screen. We propose that dauer larva formation is a behavioral response to pathogens mediated by increased dauer pheromone production.

CLUMPY DISKS AS A TESTBED FOR FEEDBACK-REGULATED GALAXY FORMATION

DOE Office of Scientific and Technical Information (OSTI.GOV)

Mayer, Lucio; Tamburello, Valentina; Lupi, Alessandro

2016-10-10

We study the dependence of fragmentation in massive gas-rich galaxy disks at z >1 on stellar feedback schemes and hydrodynamical solvers, employing the GASOLINE2 SPH code and the lagrangian mesh-less code GIZMO in finite mass mode. Non-cosmological galaxy disk runs with the standard delayed-cooling blastwave feedback are compared with runs adopting a new superbubble feedback, which produces winds by modeling the detailed physics of supernova-driven bubbles and leads to efficient self-regulation of star formation. We find that, with blastwave feedback, massive star-forming clumps form in comparable number and with very similar masses in GASOLINE2 and GIZMO. Typical clump masses aremore » in the range 10{sup 7}–10{sup 8} M {sub ⊙}, lower than in most previous works, while giant clumps with masses above 10{sup 9} M {sub ⊙} are exceedingly rare. By contrast, superbubble feedback does not produce massive star-forming bound clumps as galaxies never undergo a phase of violent disk instability. In this scheme, only sporadic, unbound star-forming overdensities lasting a few tens of Myr can arise, triggered by non-linear perturbations from massive satellite companions. We conclude that there is severe tension between explaining massive star-forming clumps observed at z >1 primarily as the result of disk fragmentation driven by gravitational instability and the prevailing view of feedback-regulated galaxy formation. The link between disk stability and star formation efficiency should thus be regarded as a key testing ground for galaxy formation theory.« less

New petrified forest in Maranhão, Permian (Cisuralian) of the Parnaíba Basin, Brazil

NASA Astrophysics Data System (ADS)

da Conceição, Domingas Maria; de Andrade, Luiz Saturnino; Cisneros, Juan Carlos; Iannuzzi, Roberto; Pereira, Agostinha Araújo; Machado, Francisco Carlos

2016-10-01

This work presents a new fossil plant-bearing area located in the municipalities of Duque Bacelar and Coelho Neto, Maranhão State, Brazil, recovered from lower Permian (Cisuralian) strata of the Pedra de Fogo Formation, northeastern portion of the Parnaíba Basin. The area comprises more than five exposures with assemblages formed mostly of large gymnosperm woods, a number of them in life-position (reaching up to ∼2.30 m in height and 1.15 m in diameter) and, in lesser degree, of horizontal tree-fern stems (up to 5 m in length), some of them being referable to Psaronius sp. The fossils are recorded in sedimentary beds of continental origin that accumulated in shallow, nearshore areas of large lakes, which eventually were affected by rapid burial episodes generated by non-channelized, high energy fluvial systems. The new fossil assemblages are included within lacustrine rocks placed at the base of the Pedra de Fogo Formation, i.e., Sílex Basal Member, near the contact with the underlying Piauí Formation (Pennsylvanian). This observation contrasts with previous studies at the southwestern portion of the basin, where the stratigraphic position of plant fossils is referred to the upper Pedra de Fogo Formation (Trisidela Member) or even to the overlying Motuca Formation. The new sites currently suffer damage from human activities and require urgent actions in order to protect them. Based on the current laws, some measures of protection for these sites are discussed and proposed herein. xml:lang="pt"

Mechanism of N[superscript 10]-formyltetrahydrofolate synthetase derived from complexes with intermediates and inhibitors

DOE Office of Scientific and Technical Information (OSTI.GOV)

Celeste, Lesa R.; Chai, Geqing; Bielak, Magdalena

N{sup 10}-formyltetrahydrofolate synthetase (FTHFS) is a folate enzyme that catalyzes the formylation of tetrahydrofolate (THF) in an ATP dependent manner. Structures of FTHFS from the thermophilic homoacetogen, Moorella thermoacetica, complexed with (1) a catalytic intermediate-formylphosphate (XPO) and product-ADP; (2) with an inhibitory substrate analog-folate; (3) with XPO and an inhibitory THF analog, ZD9331, were used to analyze the enzyme mechanism. Nucleophilic attack of the formate ion on the gamma phosphate of ATP leads to the formation of XPO and the first product ADP. A channel that leads to the putative formate binding pocket allows for the binding of ATP andmore » formate in random order. Formate binding is due to interactions with the gamma-phosphate moiety of ATP and additionally to two hydrogen bonds from the backbone nitrogen of Ala276 and the side chain of Arg97. Upon ADP dissociation, XPO reorients and moves to the position previously occupied by the beta-phosphate of ATP. Conformational changes that occur due to the XPO presence apparently allow for the recruitment of the third substrate, THF, with its pterin moiety positioned between Phe384 and Trp412. This position overlaps with that of the bound nucleoside, which is consistent with a catalytic mechanism hypothesis that FTHFS works via a sequential ping-pong mechanism. More specifically, a random bi uni uni bi ping-pong ter ter mechanism is proposed. Additionally, the native structure originally reported at a 2.5 {angstrom} resolution was redetermined at a 2.2 {angstrom} resolution.« less

Dependence of future mortality changes on global CO2 concentrations: A review.

PubMed

Lee, Jae Young; Choi, Hayoung; Kim, Ho

2018-05-01

The heterogeneity among previous studies of future mortality projections due to climate change has often hindered comparisons and syntheses of resulting impacts. To address this challenge, the present study introduced a novel method to normalize the results from projection studies according to different baseline and projection periods and climate scenarios, thereby facilitating comparison and synthesis. This study reviewed the 15 previous studies involving projected climate change-related mortality under Representative Concentration Pathways. To synthesize their results, we first reviewed the important study design elements that affected the reported results in previous studies. Then, we normalized the reported results by CO 2 concentration in order to eliminate the effects of the baseline period, projection period, and climate scenario choices. For twenty-five locations worldwide, the normalized percentage changes in temperature-attributable mortality per 100 ppm increase in global CO 2 concentrations ranged between 41.9% and 330%, whereas those of total mortality ranged between 0.3% and 4.8%. The normalization methods presented in this work will guide future studies to provide their results in a normalized format and facilitate research synthesis to reinforce our understanding on the risk of climate change. Copyright © 2018 Elsevier Ltd. All rights reserved.

Can anaerobes be acid fast? A novel, clinically relevant acid fast anaerobe.

PubMed

Navas, Maria E; Jump, Robin; Canaday, David H; Wnek, Maria D; SenGupta, Dhruba J; McQuiston, John R; Bell, Melissa

2016-08-01

Anaerobic acid fast bacilli (AFB) have not been previously reported in clinical microbiology. This is the second case report of a novel anaerobic AFB causing disease in humans. An anaerobic AFB was isolated from an abdominal wall abscess in a 64-year-old Caucasian diabetic male, who underwent distal pancreatectomy and splenectomy for resection of a pancreatic neuroendocrine tumour. The isolated bacteria were gram-variable and acid-fast, consisting of small irregular rods. The 16S rRNA gene sequence analysis showed that the isolate is a novel organism described in the literature only once before. The organism was studied at the CDC (Centers for Disease Control and Prevention) by the same group that worked with the isolates from the previous report; their findings suggest that the strain belongs to the suborder Corynebacterineae. This is the fifth reported case of an anaerobic AFB involved in clinical disease; its microbiological features and 16S RNA sequence are identical to previously reported cases. Clinical disease with this organism seems to be associated with recent history of surgery and abscess formation in deep soft tissues. Acquisition from surgical material is uncertain but seems unlikely.

Shame, internalized homophobia, identity formation, attachment style, and the connection to relationship status in gay men.

PubMed

Brown, Jac; Trevethan, Robert

2010-09-01

This study reports on a survey of 166 gay men in Sydney, Australia, that explores the links between internalized shame, internalized homophobia, and attachment style. These variables were linked to the age of coming out, family and peer acceptance of their sexuality, relationship status, and previous marriage. Findings suggest a strong relationship between shame, internalized homophobia, and anxious and avoidant attachment style. Shame was predicted by internalized homophobia and anxious and avoidant attachment style. A significant proportion of gay men reported that they were not easily accepted when they first came out. There was a significant relationship between coming out and internalized homophobia but not with shame and attachment style. Furthermore, men who had never come out to family and friends reported higher levels of internalized homophobia but not higher levels of shame and attachment style. Of particular significance was the connection between previous marriage and higher levels of shame and internalized homophobia. Finally, gay men who were not currently in a relationship reported higher levels of shame anxious and avoidant attachment style. These findings are related to therapeutic work with gay men who have previously been married and those who are concerned with their current single status.

The Pan-STARRS1 Medium-deep Survey: Star Formation Quenching in Group and Cluster Environments

DOE Office of Scientific and Technical Information (OSTI.GOV)

Jian, Hung-Yu; Lin, Lihwai; Lin, Kai-Yang

We make use of a catalog of 1600 Pan-STARRS1 groups produced by the probability friends-of-friends algorithm to explore how the galaxy properties, i.e., the specific star formation rate (SSFR) and quiescent fraction, depend on stellar mass and group-centric radius. The work is the extension of Lin et al. In this work, powered by a stacking technique plus a background subtraction for contamination removal, a finer correction and more precise results are obtained than in our previous work. We find that while the quiescent fraction increases with decreasing group-centric radius, the median SSFRs of star-forming galaxies in groups at fixed stellarmore » mass drop slightly from the field toward the group center. This suggests that the main quenching process in groups is likely a fast mechanism. On the other hand, a reduction in SSFRs by ∼0.2 dex is seen inside clusters as opposed to the field galaxies. If the reduction is attributed to the slow quenching effect, the slow quenching process acts dominantly in clusters. In addition, we also examine the density–color relation, where the density is defined by using a sixth-nearest-neighbor approach. Comparing the quiescent fractions contributed from the density and radial effect, we find that the density effect dominates the massive group or cluster galaxies, and the radial effect becomes more effective in less massive galaxies. The results support mergers and/or starvation as the main quenching mechanisms in the group environment, while harassment and/or starvation dominate in clusters.« less

Ploidy-Regulated Variation in Biofilm-Related Phenotypes in Natural Isolates of Saccharomyces cerevisiae

PubMed Central

Hope, Elyse A.; Dunham, Maitreya J.

2014-01-01

The ability of yeast to form biofilms contributes to better survival under stressful conditions. We see the impact of yeast biofilms and “flocs” (clumps) in human health and industry, where forming clumps enables yeast to act as a natural filter in brewing and forming biofilms enables yeast to remain virulent in cases of fungal infection. Despite the importance of biofilms in yeast natural isolates, the majority of our knowledge about yeast biofilm genetics comes from work with a few tractable laboratory strains. A new collection of sequenced natural isolates from the Saccharomyces Genome Resequencing Project enabled us to examine the breadth of biofilm-related phenotypes in geographically, ecologically, and genetically diverse strains of Saccharomyces cerevisiae. We present a panel of 31 haploid and 24 diploid strains for which we have characterized six biofilm-related phenotypes: complex colony morphology, complex mat formation, flocculation, agar invasion, polystyrene adhesion, and psuedohyphal growth. Our results show that there is extensive phenotypic variation between and within strains, and that these six phenotypes are primarily uncorrelated or weakly correlated, with the notable exception of complex colony and complex mat formation. We also show that the phenotypic strength of these strains varies significantly depending on ploidy, and the diploid strains demonstrate both decreased and increased phenotypic strength with respect to their haploid counterparts. This is a more complex view of the impact of ploidy on biofilm-related phenotypes than previous work with laboratory strains has suggested, demonstrating the importance and enormous potential of working with natural isolates of yeast. PMID:25060625

Ploidy-regulated variation in biofilm-related phenotypes in natural isolates of Saccharomyces cerevisiae.

PubMed

Hope, Elyse A; Dunham, Maitreya J

2014-07-24

The ability of yeast to form biofilms contributes to better survival under stressful conditions. We see the impact of yeast biofilms and "flocs" (clumps) in human health and industry, where forming clumps enables yeast to act as a natural filter in brewing and forming biofilms enables yeast to remain virulent in cases of fungal infection. Despite the importance of biofilms in yeast natural isolates, the majority of our knowledge about yeast biofilm genetics comes from work with a few tractable laboratory strains. A new collection of sequenced natural isolates from the Saccharomyces Genome Resequencing Project enabled us to examine the breadth of biofilm-related phenotypes in geographically, ecologically, and genetically diverse strains of Saccharomyces cerevisiae. We present a panel of 31 haploid and 24 diploid strains for which we have characterized six biofilm-related phenotypes: complex colony morphology, complex mat formation, flocculation, agar invasion, polystyrene adhesion, and psuedohyphal growth. Our results show that there is extensive phenotypic variation between and within strains, and that these six phenotypes are primarily uncorrelated or weakly correlated, with the notable exception of complex colony and complex mat formation. We also show that the phenotypic strength of these strains varies significantly depending on ploidy, and the diploid strains demonstrate both decreased and increased phenotypic strength with respect to their haploid counterparts. This is a more complex view of the impact of ploidy on biofilm-related phenotypes than previous work with laboratory strains has suggested, demonstrating the importance and enormous potential of working with natural isolates of yeast. Copyright © 2014 Hope and Dunham.

The Pan-STARRS1 Medium-deep Survey: Star Formation Quenching in Group and Cluster Environments

NASA Astrophysics Data System (ADS)

Jian, Hung-Yu; Lin, Lihwai; Lin, Kai-Yang; Foucaud, Sebastien; Chen, Chin-Wei; Chiueh, Tzihong; Bower, R. G.; Cole, Shaun; Chen, Wen-Ping; Burgett, W. S.; Draper, P. W.; Flewelling, H.; Huber, M. E.; Kaiser, N.; Kudritzki, R.-P.; Magnier, E. A.; Metcalfe, N.; Wainscoat, R. J.; Waters, C.

2017-08-01

We make use of a catalog of 1600 Pan-STARRS1 groups produced by the probability friends-of-friends algorithm to explore how the galaxy properties, I.e., the specific star formation rate (SSFR) and quiescent fraction, depend on stellar mass and group-centric radius. The work is the extension of Lin et al. In this work, powered by a stacking technique plus a background subtraction for contamination removal, a finer correction and more precise results are obtained than in our previous work. We find that while the quiescent fraction increases with decreasing group-centric radius, the median SSFRs of star-forming galaxies in groups at fixed stellar mass drop slightly from the field toward the group center. This suggests that the main quenching process in groups is likely a fast mechanism. On the other hand, a reduction in SSFRs by ˜0.2 dex is seen inside clusters as opposed to the field galaxies. If the reduction is attributed to the slow quenching effect, the slow quenching process acts dominantly in clusters. In addition, we also examine the density-color relation, where the density is defined by using a sixth-nearest-neighbor approach. Comparing the quiescent fractions contributed from the density and radial effect, we find that the density effect dominates the massive group or cluster galaxies, and the radial effect becomes more effective in less massive galaxies. The results support mergers and/or starvation as the main quenching mechanisms in the group environment, while harassment and/or starvation dominate in clusters.

The Collins Creek and Pleasant Creek Formations: Two new upper cretaceous subsurface units in the Carolina/Georgia Coastal Plain

USGS Publications Warehouse

,; Prowell, D.C.; Christopher, R.A.

2004-01-01

This paper formally defines two new Upper Cretaceous subsurface units in the southern Atlantic Coastal Plain of North Carolina, South Carolina and Georgia: the Collins Creek Formation and the Pleasant Creek Formation. These units are confined to the subsurface of the outer Coastal Plain, and their type sections are established in corehole CHN-820 from Charleston County, S.C. The Collins Creek Formation consists of greenish-gray lignitic sand and dark-greenish-gray sandy clay and is documented in cores from Allendale, Beaufort, Berkeley, Dorchester, Jasper and Marion Counties, South Carolina, and from Screven County, Georgia. Previously, Collins Creek strata had been incorrectly assigned to the Middendorf Formation. These sediments occupy a stratigraphic position between the Turonian/Coniacian Cape Fear Formation (?) below and the proposed upper Coniacian to middle Santonian Pleasant Creek Formation above. The Collins Creek Formation is middle and late Coniacian in age on the basis of calcareous nannofossil and palynomorph analyses. The Pleasant Creek Formation consists of olive-gray sand and dark-greenish-gray silty to sandy clay and is documented in cores from New Hanover County, North Carolina, and Berkeley, Charleston, Dorchester, Horry and Marion Counties, South Carolina. The strata of this unit previously were assigned incorrectly to the Middendorf Formation and (or) the Cape Fear Formation. These sediments occupy a stratigraphic position between the proposed Collins Creek Formation below and the Shepherd Grove Formation above. The Pleasant Creek Formation is late Coniacian and middle Santonian in age, on the basis of its calcareous nannofossil and palynomorph assemblages.

Numerical Simulation of Protoplanetary Vortices

NASA Technical Reports Server (NTRS)

Lin, H.; Barranco, J. A.; Marcus, P. S.

2003-01-01

The fluid dynamics within a protoplanetary disk has been attracting the attention of many researchers for a few decades. Previous works include, to list only a few among many others, the well-known prescription of Shakura & Sunyaev, the convective and instability study of Stone & Balbus and Hawley et al., the Rossby wave approach of Lovelace et al., as well as a recent work by Klahr & Bodenheimer, which attempted to identify turbulent flow within the disk. The disk is commonly understood to be a thin gas disk rotating around a central star with differential rotation (the Keplerian velocity), and the central quest remains as how the flow behavior deviates (albeit by a small amount) from a strong balance established between gravitational and centrifugal forces, transfers mass and momentum inward, and eventually forms planetesimals and planets. In earlier works we have briefly described the possible physical processes involved in the disk; we have proposed the existence of long-lasting, coherent vortices as an efficient agent for mass and momentum transport. In particular, Barranco et al. provided a general mathematical framework that is suitable for the asymptotic regime of the disk; Barranco & Marcus (2000) addressed a proposed vortex-dust interaction mechanism which might lead to planetesimal formation; and Lin et al. (2002), as inspired by general geophysical vortex dynamics, proposed basic mechanisms by which vortices can transport mass and angular momentum. The current work follows up on our previous effort. We shall focus on the detailed numerical implementation of our problem. We have developed a parallel, pseudo-spectral code to simulate the full three-dimensional vortex dynamics in a stably-stratified, differentially rotating frame, which represents the environment of the disk. Our simulation is validated with full diagnostics and comparisons, and we present our results on a family of three-dimensional, coherent equilibrium vortices.

A GAS-PHASE FORMATION ROUTE TO INTERSTELLAR TRANS-METHYL FORMATE

DOE Office of Scientific and Technical Information (OSTI.GOV)

Cole, Callie A.; Wehres, Nadine; Yang Zhibo

2012-07-20

The abundance of methyl formate in the interstellar medium has previously been underpredicted by chemical models. Additionally, grain surface chemistry cannot account for the relative abundance of the cis- and trans-conformers of methyl formate, and the trans-conformer is not even formed at detectable abundance on these surfaces. This highlights the importance of studying formation pathways to methyl formate in the gas phase. The rate constant and branching fractions are reported for the gas-phase reaction between protonated methanol and formic acid to form protonated trans-methyl formate and water as well as adduct ion: Rate constants were experimentally determined using a flowingmore » afterglow-selected ion flow tube apparatus at 300 K and a pressure of 530 mTorr helium. The results indicate a moderate overall rate constant of (3.19 {+-} 0.39) Multiplication-Sign 10{sup -10} cm{sup 3} s{sup -1} ({+-} 1{sigma}) and an average branching fraction of 0.05 {+-} 0.04 for protonated trans-methyl formate and 0.95 {+-} 0.04 for the adduct ion. These experimental results are reinforced by ab initio calculations at the MP2(full)/aug-cc-pVTZ level of theory to examine the reaction coordinate and complement previous density functional theory calculations. This study underscores the need for continued observational studies of trans-methyl formate and for the exploration of other gas-phase formation routes to complex organic molecules.« less

Analysis of Shigella flexneri Resistance, Biofilm Formation, and Transcriptional Profile in Response to Bile Salts

PubMed Central

Nickerson, Kourtney P.; Chanin, Rachael B.; Sistrunk, Jeticia R.; Fink, Peter J.; Barry, Eileen M.; Nataro, James P.

2017-01-01

ABSTRACT The Shigella species cause millions of cases of watery or bloody diarrhea each year, mostly in children in developing countries. While many aspects of Shigella colonic cell invasion are known, crucial gaps in knowledge regarding how the bacteria survive, transit, and regulate gene expression prior to infection remain. In this study, we define mechanisms of resistance to bile salts and build on previous research highlighting induced virulence in Shigella flexneri strain 2457T following exposure to bile salts. Typical growth patterns were observed within the physiological range of bile salts; however, growth was inhibited at higher concentrations. Interestingly, extended periods of exposure to bile salts led to biofilm formation, a conserved phenotype that we observed among members of the Enterobacteriaceae. Characterization of S. flexneri 2457T biofilms determined that both bile salts and glucose were required for formation, dispersion was dependent upon bile salts depletion, and recovered bacteria displayed induced adherence to HT-29 cells. RNA-sequencing analysis verified an important bile salt transcriptional profile in S. flexneri 2457T, including induced drug resistance and virulence gene expression. Finally, functional mutagenesis identified the importance of the AcrAB efflux pump and lipopolysaccharide O-antigen synthesis for bile salt resistance. Our data demonstrate that S. flexneri 2457T employs multiple mechanisms to survive exposure to bile salts, which may have important implications for multidrug resistance. Furthermore, our work confirms that bile salts are important physiological signals to activate S. flexneri 2457T virulence. This work provides insights into how exposure to bile likely regulates Shigella survival and virulence during host transit and subsequent colonic infection. PMID:28348056

Preliminary characterization of wild lactic acid bacteria and their abilities to produce flavour compounds in ripened model cheese system.

PubMed

Randazzo, C L; De Luca, S; Todaro, A; Restuccia, C; Lanza, C M; Spagna, G; Caggia, C

2007-08-01

The aim of this work was to preliminary characterize wild lactic acid bacteria (LAB), previously isolated during artisanal Pecorino Siciliano (PS) cheese-making for technological and flavour formation abilities in a model cheese system. Twelve LAB were studied for the ability to grow at 10 and 45 degrees C, to coagulate and acidify both reconstituted skim milk and ewe's milk. Moreover, the capacity of the strains to generate aroma compounds was evaluated in a model cheese system at 30- and 60-day ripening. Flavour compounds were screened by sensory analysis and throughout gas chromatography (GC)-mass spectrometry (MS). Most of the strains were able to grow both at 10 and 45 degrees C and exhibited high ability to acidify and coagulate ewes' milk. Sensory evaluation revealed that the wild strains produced more significant flavour attributes than commercial strains in the 60-day-old model cheese system. GC-MS data confirmed the results of sensory evaluations and showed the ability of wild lactobacilli to generate key volatile compounds. Particularly, three wild lactobacilli strains, belonging to Lactobacillus casei, Lb. rhamnosus and Lb. plantarum species, generated both in 60- and 30-day-old model cheeses system, the 3-methyl butan(al)(ol) compound, which is associated with fruity taste. The present work preliminarily demonstrated that the technological and flavour formation abilities of the wild strains are strain-specific and that wild lactobacilli, which produced key flavour compounds during ripening, could be used as tailor-made starters. This study reports the technological characterization and flavour formation ability of wild LAB strains isolated from artisanal Pecorino cheese and highlights that the catabolic activities were highly strain dependent. Hence, wild lactobacilli could be selected as tailor-made starter cultures for the PS cheese manufacture.

Oligomerization of the E. coli Core RNA Polymerase: Formation of (α2ββ'ω)2–DNA Complexes and Regulation of the Oligomerization by Auxiliary Subunits

PubMed Central

Kansara, Seema G.; Sukhodolets, Maxim V.

2011-01-01

In this work, using multiple, dissimilar physico-chemical techniques, we demonstrate that the Escherichia coli RNA polymerase core enzyme obtained through a classic purification procedure forms stable (α2ββ'ω)2 complexes in the presence or absence of short DNA probes. Multiple control experiments indicate that this self-association is unlikely to be mediated by RNA polymerase-associated non-protein molecules. We show that the formation of (α2ββ'ω)2 complexes is subject to regulation by known RNA polymerase interactors, such as the auxiliary SWI/SNF subunit of RNA polymerase RapA, as well as NusA and σ70. We also demonstrate that the separation of the core RNA polymerase and RNA polymerase holoenzyme species during Mono Q chromatography is likely due to oligomerization of the core enzyme. We have analyzed the oligomeric state of the polymerase in the presence or absence of DNA, an aspect that was missing from previous studies. Importantly, our work demonstrates that RNA polymerase oligomerization is compatible with DNA binding. Through in vitro transcription and in vivo experiments (utilizing a RapAR599/Q602 mutant lacking transcription-stimulatory function), we demonstrate that the formation of tandem (α2ββ'ω)2–DNA complexes is likely functionally significant and beneficial for the transcriptional activity of the polymerase. Taken together, our findings suggest a novel structural aspect of the E. coli elongation complex. We hypothesize that transcription by tandem RNA polymerase complexes initiated at hypothetical bidirectional “origins of transcription” may explain recurring switches of the direction of transcription in bacterial genomes. PMID:21533049

Representational task formats and problem solving strategies in kinematics and work

NASA Astrophysics Data System (ADS)

Ibrahim, Bashirah; Rebello, N. Sanjay

2012-06-01

Previous studies have reported that students employed different problem solving approaches when presented with the same task structured with different representations. In this study, we explored and compared students’ strategies as they attempted tasks from two topical areas, kinematics and work. Our participants were 19 engineering students taking a calculus-based physics course. The tasks were presented in linguistic, graphical, and symbolic forms and requested either a qualitative solution or a value. The analysis was both qualitative and quantitative in nature focusing principally on the characteristics of the strategies employed as well as the underlying reasoning for their applications. A comparison was also made for the same student’s approach with the same kind of representation across the two topics. Additionally, the participants’ overall strategies across the different tasks, in each topic, were considered. On the whole, we found that the students prefer manipulating equations irrespective of the representational format of the task. They rarely recognized the applicability of a “qualitative” approach to solve the problem although they were aware of the concepts involved. Even when the students included visual representations in their solutions, they seldom used these representations in conjunction with the mathematical part of the problem. Additionally, the students were not consistent in their approach for interpreting and solving problems with the same kind of representation across the two topical areas. The representational format, level of prior knowledge, and familiarity with a topic appeared to influence their strategies, their written responses, and their ability to recognize qualitative ways to attempt a problem. The nature of the solution does not seem to impact the strategies employed to handle the problem.

Development of implants composed of bioactive materials for bone repair

NASA Astrophysics Data System (ADS)

Xiao, Wei

The purpose of this Ph.D. research was to address the clinical need for synthetic bioactive materials to heal defects in non-loaded and loaded bone. Hollow hydroxyapatite (HA) microspheres created in a previous study were evaluated as a carrier for controlled release of bone morphogenetic protein-2 (BMP2) in bone regeneration. New bone formation in rat calvarial defects implanted with BMP2-loaded microspheres (43%) was significantly higher than microspheres without BMP2 (17%) at 6 weeks postimplantation. Then hollow HA microspheres with a carbonate-substituted composition were prepared to improve their resorption rate. Hollow HA microspheres with 12 wt. % of carbonate showed significantly higher new bone formation (73 +/- 8%) and lower residual HA (7 +/- 2%) than stoichiometric HA microspheres (59 +/- 2% new bone formation; 21 +/- 3% residual HA). The combination of carbonate-substituted hollow HA microspheres and clinically-safe doses of BMP2 could provide promising implants for healing non-loaded bone defects. Strong porous scaffolds of bioactive silicate (13-93) glass were designed with the aid of finite-element modeling, created by robocasting and evaluated for loaded bone repair. Scaffolds with a porosity gradient to mimic human cortical bone showed a compressive strength of 88 +/- 20 MPa, a flexural strength of 34 +/- 5 MPa and the ability to support bone infiltration in vivo. The addition of a biodegradable polylactic acid (PLA) layer to the external surface of these scaffolds increased their load-bearing capacity in four-point bending by 50% and dramatically enhanced their work of fracture, resulting in a "ductile" mechanical response. These bioactive glass-PLA composites, combining bioactivity, high strength, high work of fracture and an internal architecture conducive to bone infiltration, could provide optimal implants for structural bone repair.

Feeling stretched or compressed? The multiple mechanosensitive responses of wood formation to bending.

PubMed

Roignant, Jeanne; Badel, Éric; Leblanc-Fournier, Nathalie; Brunel-Michac, Nicole; Ruelle, Julien; Moulia, Bruno; Decourteix, Mélanie

2018-05-11

Trees constantly experience wind, perceive resulting mechanical cues, and modify their growth and development accordingly. Previous studies have demonstrated that multiple bending treatments trigger ovalization of the stem and the formation of flexure wood in gymnosperms, but ovalization and flexure wood have rarely been studied in angiosperms, and none of the experiments conducted so far has used multidirectional bending treatments at controlled intensities. Assuming that bending involves tensile and compressive strain, we hypothesized that different local strains may generate specific growth and wood differentiation responses. Basal parts of young poplar stems were subjected to multiple transient controlled unidirectional bending treatments during 8 weeks, which enabled a distinction to be made between the wood formed under tensile or compressive flexural strains. This set-up enabled a local analysis of poplar stem responses to multiple stem bending treatments at growth, anatomical, biochemical and molecular levels. In response to multiple unidirectional bending treatments, poplar stems developed significant cross-sectional ovalization. At the tissue level, some aspects of wood differentiation were similarly modulated in the compressed and stretched zones (vessel frequency and diameter of fibres without a G-layer), whereas other anatomical traits (vessel diameter, G-layer formation, diameter of fibres with a G-layer and microfibril angle) and the expression of fasciclin-encoding genes were differentially modulated in the two zones. This work leads us to propose new terminologies to distinguish the 'flexure wood' produced in response to multiple bidirectional bending treatments from wood produced under transient tensile strain (tensile flexure wood; TFW) or under transient compressive strain (compressive flexure wood; CFW). By highlighting similarities and differences between tension wood and TFW and by demonstrating that plants could have the ability to discriminate positive strains from negative strains, this work provides new insight into the mechanisms of mechanosensitivity in plants.

An Infrared Spectroscopic Study Toward the Formation of Alkylphosphonic Acids and Their Precursors in Extraterrestrial Environments

NASA Astrophysics Data System (ADS)

Turner, Andrew M.; Abplanalp, Matthew J.; Blair, Tyler J.; Dayuha, Remwilyn; Kaiser, Ralf I.

2018-01-01

The only known phosphorus-containing organic compounds of extraterrestrial origin, alkylphosphonic acids, were discovered in the Murchison meteorite and have accelerated the hypothesis that reduced oxidation states of phosphorus were delivered to early Earth and served as a prebiotic source of phosphorus. While previous studies looking into the formation of these alkylphosphonic acids have focused on the iron–nickel phosphide mineral schreibersite and phosphorous acid as a source of phosphorus, this work utilizes phosphine (PH3), which has been discovered in the circumstellar envelope of IRC +10216, in the atmosphere of Jupiter and Saturn, and believed to be the phosphorus carrier in comet 67P/Churyumov–Gerasimenko. Phosphine ices prepared with interstellar molecules such as carbon dioxide, water, and methane were subjected to electron irradiation, which simulates the secondary electrons produced from galactic cosmic rays penetrating the ice, and probed using infrared spectroscopy to understand the possible formation of alkylphosphonic acids and their precursors on interstellar icy grains that could become incorporated into meteorites such as Murchison. We present the first study and results on the possible synthesis of alkylphosphonic acids produced from phosphine-mixed ices under interstellar conditions. All functional groups of alkylphosphonic acids were detected through infrared spectroscopically, suggesting that this class of molecules can be formed in interstellar ices.

The indication of Martian gully formation processes by slope-area analysis

USGS Publications Warehouse

Conway, S.J.; Balme, M.R.; Murray, J.B.; Towner, M.C.; Okubo, C.H.; Grindrod, P.M.

2011-01-01

The formation process of recent gullies on Mars is currently under debate. This study aims to discriminate between the proposed formation processes - pure water flow, debris flow and dry mass wasting - through the application of geomorphological indices commonly used in terrestrial geomorphology. High-resolution digital elevation models (DEMs) of Earth and Mars were used to evaluate the drainage characteristics of small slope sections. Data from Earth were used to validate the hillslope, debris-flow and alluvial process domains previously found for large fluvial catchments on Earth, and these domains were applied to gullied and ungullied slopes on Mars. In accordance with other studies, our results indicate that debris flow is one of the main processes forming the Martian gullies that were being examined. The source of the water is predominantly distributed surface melting, not an underground aquifer. Evidence is also presented indicating that other processes may have shaped Martian crater slopes, such as ice-assisted creep and solifluction, in agreement with the proposed recent Martian glacial and periglacial climate. Our results suggest that, within impact craters, different processes are acting on differently oriented slopes, but further work is needed to investigate the potential link between these observations and changes in Martian climate. ?? The Geological Society of London 2011.

Glycidyl esters in refined palm (Elaeis guineensis) oil and related fractions. Part II: practical recommendations for effective mitigation.

PubMed

Craft, Brian D; Nagy, Kornél; Seefelder, Walburga; Dubois, Mathieu; Destaillats, Frédéric

2012-05-01

In a previous work, it was shown that at high temperatures (up to 280°C) glycidyl esters (GE) are formed from diacylglycerols (DAG) via elimination of free fatty acid (FFA). In the present study, the impact of DAG content and temperature on the formation of GE using a model vacuum system mimicking industrial edible oil deodorization is investigated. These deodorization experiments confirmed that the formation of GE from DAG is extensive at temperatures above 230-240°C, and therefore, this value should be considered as an upper limit for refining operations. Furthermore, experimental data suggest that the formation of GE accelerates in particular when the DAG levels in refined oils exceed 3-4% of total lipids. Analysis of the lipid composition of crude palm oil (CPO) samples allowed the estimation that this critical DAG content corresponds to about 1.9-2.5% of FFA, which is the conventional quality marker of CPO. Moreover, high levels (>100ppm) of GE were also found in palm fatty acid distillate samples, which may indicate that the level of GE in fully refined palm oils also depends on the elimination rate of GE into the fatty acid distillate. Copyright © 2011 Elsevier Ltd. All rights reserved.

Molecular Gas Excitation and the Evolutionary Connection Between Submillimeter Galaxies and AGN at z~2-3

NASA Astrophysics Data System (ADS)

Sharon, Chelsea; Riechers, Dominik Alexander; Carilli, Christopher; Hodge, Jacqueline; Walter, Fabian

2015-08-01

Theoretical work has suggested that active galactic nuclei (AGN) may play an important role in quenching star formation in massive galaxies. Due to sensitivity demands, direct evidence for AGN affecting the molecular ISM (the gas phase that fuels star formation) has so far been limited to detections of molecular outflows in low-redshift systems. Indirect evidence for an interplay between AGN and their host galaxies' cold gas phase may be provided by measurements of the gas excitation (and dynamics). At z~2-3, the peak epoch of star formation and AGN activity, previous observations of the CO(1-0) line revealed that submillimeter galaxies have substantial reservoirs of cold molecular gas. However, the molecular gas in AGN-host galaxies appears highly excited, potentially supporting an evolutionary connection between these two populations. We will present a new larger Karl G. Jansky Very Large Array sample that nearly doubles the number of CO(1-0) detections in z~2-3 submillimeter galaxies and AGN-host galaxies with existing CO(3-2) detections (from 13 to 23, plus four new upper limits) that allows us to better compare the low-excitation molecular gas properties of these systems and further investigate potential evidence for gas excitation due to active black holes.

Surfactin triggers biofilm formation of Bacillus subtilis in melon phylloplane and contributes to the biocontrol activity.

PubMed

Zeriouh, Houda; de Vicente, Antonio; Pérez-García, Alejandro; Romero, Diego

2014-07-01

The biocontrol activity of many Bacillus species has been traditionally related to the direct antagonism of pathogens. In previous works, we reported that B. subtilis strain UMAF6614 was an efficient biocontrol agent that produced bacillomycin, fengycin and surfactin lipopeptides. Bacillomycins and fengycins were shown to have antagonistic activity towards fungal and bacterial pathogens of cucurbits; however, the functionality of surfactin remained unclear. In this study, the role of surfactin in the biocontrol activity of this strain was investigated. We observed that a deficiency in surfactin production led to a partial reduction of disease suppression by this biocontrol agent, which coincided with a defect in biofilm formation and the colonization of the melon phylloplane. These effects were due to a dramatic reduction in the production of exopolysaccharide and the TasA protein, which are the two major components of the extracellular matrix. We propose that the biocontrol activity of this strain is the result of the coordinated action of the three families of lipopeptides. B. subtilis UMAF6614 produces surfactin to trigger biofilm formation on melon phylloplane, which ensures the long-term persistence and the adequate secretion of suppressive lipopeptides, bacillomycins and fengycins, which efficiently target pathogens. © 2013 Society for Applied Microbiology and John Wiley & Sons Ltd.

Mechanical force antagonizes the inhibitory effects of RecX on RecA filament formation in Mycobacterium tuberculosis

PubMed Central

Le, Shimin; Chen, Hu; Zhang, Xinghua; Chen, Jin; Patil, K. Neelakanteshwar; Muniyappa, Kalappa; Yan, Jie

2014-01-01

Efficient bacterial recombinational DNA repair involves rapid cycles of RecA filament assembly and disassembly. The RecX protein plays a crucial inhibitory role in RecA filament formation and stability. As the broken ends of DNA are tethered during homologous search, RecA filaments assembled at the ends are likely subject to force. In this work, we investigated the interplay between RecX and force on RecA filament formation and stability. Using magnetic tweezers, at single molecular level, we found that Mycobacterium tuberculosis (Mt) RecX could catalyze stepwise de-polymerization of preformed MtRecA filament in the presence of ATP hydrolysis at low forces (<7 pN). However, applying larger forces antagonized the inhibitory effects of MtRecX, and a partially de-polymerized MtRecA filament could re-polymerize in the presence of MtRecX, which cannot be explained by previous models. Theoretical analysis of force-dependent conformational free energies of naked ssDNA and RecA nucleoprotein filament suggests that mechanical force stabilizes RecA filament, which provides a possible mechanism for the observation. As the antagonizing effect of force on the inhibitory function of RecX takes place in a physiological range; these findings broadly suggest a potential mechanosensitive regulation during homologous recombination. PMID:25294832

A local leaky-box model for the local stellar surface density-gas surface density-gas phase metallicity relation

NASA Astrophysics Data System (ADS)

Zhu, Guangtun Ben; Barrera-Ballesteros, Jorge K.; Heckman, Timothy M.; Zakamska, Nadia L.; Sánchez, Sebastian F.; Yan, Renbin; Brinkmann, Jonathan

2017-07-01

We revisit the relation between the stellar surface density, the gas surface density and the gas-phase metallicity of typical disc galaxies in the local Universe with the SDSS-IV/MaNGA survey, using the star formation rate surface density as an indicator for the gas surface density. We show that these three local parameters form a tight relationship, confirming previous works (e.g. by the PINGS and CALIFA surveys), but with a larger sample. We present a new local leaky-box model, assuming star-formation history and chemical evolution is localized except for outflowing materials. We derive closed-form solutions for the evolution of stellar surface density, gas surface density and gas-phase metallicity, and show that these parameters form a tight relation independent of initial gas density and time. We show that, with canonical values of model parameters, this predicted relation match the observed one well. In addition, we briefly describe a pathway to improving the current semi-analytic models of galaxy formation by incorporating the local leaky-box model in the cosmological context, which can potentially explain simultaneously multiple properties of Milky Way-type disc galaxies, such as the size growth and the global stellar mass-gas metallicity relation.

Corneal haze following PRK with mitomycin C as a retreatment versus prophylactic use in the contralateral eye.

PubMed

Netto, Marcelo V; Chalita, Maria Regina; Krueger, Ronald R

2007-01-01

To report photorefractive keratectomy (PRK) treated with mitomycin C (MMC) for previous corneal haze in one eye and PRK with MMC to prevent corneal haze formation in the fellow eye. A 40-year-old woman underwent PRK with MMC to treat previous corneal haze (secondary to previous PRK without MMC) for residual refractive error of +0.50 +0.25 x 165 in the left eye and PRK with MMC to prevent corneal haze in the right eye. Postoperative slit-lamp examination revealed no haze in the right eye, but continued mild haze in the left eye. Treatment with PRK and MMC for previous corneal haze is not as effective as primary PRK with MMC in preventing postoperative corneal haze formation.

Key issues of ultraviolet radiation of OH at high altitudes

NASA Astrophysics Data System (ADS)

Zhang, Yuhuai; Wan, Tian; Jiang, Jianzheng; Fan, Jing

2014-12-01

Ultraviolet (UV) emissions radiated by hydroxyl (OH) is one of the fundamental elements in the prediction of radiation signature of high-altitude and high-speed vehicle. In this work, the OH A2Σ+→ X2Π ultraviolet emission band behind the bow shock is computed under the experimental condition of the second bow-shock ultraviolet flight (BSUV-2). Four related key issues are discussed, namely, the source of hydrogen element in the high-altitude atmosphere, the formation mechanism of OH species, efficient computational algorithm of trace species in rarefied flows, and accurate calculation of OH emission spectra. Firstly, by analyzing the typical atmospheric model, the vertical distributions of the number densities of different species containing hydrogen element are given. According to the different dominating species containing hydrogen element, the atmosphere is divided into three zones, and the formation mechanism of OH species is analyzed in the different zones. The direct simulation Monte Carlo (DSMC) method and the Navier-Stokes equations are employed to compute the number densities of the different OH electronically and vibrationally excited states. Different to the previous work, the trace species separation (TSS) algorithm is applied twice in order to accurately calculate the densities of OH species and its excited states. Using a non-equilibrium radiation model, the OH ultraviolet emission spectra and intensity at different altitudes are computed, and good agreement is obtained with the flight measured data.

The Higher Learning and High Technology: Dynamics of Higher Education Policy Formation.

ERIC Educational Resources Information Center

Slaughter, Sheila

An examination of national higher education policy formation focuses on the shift in relationships of the central actors in the policy formation process. It is argued that whereas the federal government, together with the scientific community and foundations, previously had the dominant voice, the corporate community, in partnership with leaders…

Lymphogranuloma venereum: a rare and forgotten cause of rectal stricture formation.

PubMed

Craxford, Leia; Fox, Ashini

2018-01-01

Lymphogranuloma venereum (LGV) is caused by L1, L2 and L3 serovars of Chlamydia trachomatis. The anorectal syndrome caused by LGV is often misdiagnosed as inflammatory bowel disease and may rarely lead to stricture formation. Recurrent stricture formation, despite adequate LGV treatment, has not to our knowledge, previously been reported.

Increasing Learning: Classroom Assessment Techniques in the Online Classroom

ERIC Educational Resources Information Center

Cross, Ted; Palese, Kelly

2015-01-01

Five full-time online mathematics instructors participated in a study to test the impact of using discussion forums as a space for formative assessments. Mean student posting activity and student quiz scores for sections in which the instructors used formative assessments were compared with previous sections in which formative assessments were not…

12 CFR 335.801 - Inapplicable SEC regulations; FDIC substituted regulations; additional information.

Code of Federal Regulations, 2013 CFR

2013-01-01

... a continuing hardship exemption under these rules may file the forms with the FDIC in paper format... these rules may file the appropriate forms with the FDIC in paper format. Instructions for continuing...) Previously filed exhibits, whether in paper or electronic format, may be incorporated by reference into an...

12 CFR 335.801 - Inapplicable SEC regulations; FDIC substituted regulations; additional information.

Code of Federal Regulations, 2014 CFR

2014-01-01

... a continuing hardship exemption under these rules may file the forms with the FDIC in paper format... these rules may file the appropriate forms with the FDIC in paper format. Instructions for continuing...) Previously filed exhibits, whether in paper or electronic format, may be incorporated by reference into an...

12 CFR 335.801 - Inapplicable SEC regulations; FDIC substituted regulations; additional information.

Code of Federal Regulations, 2012 CFR

2012-01-01

... a continuing hardship exemption under these rules may file the forms with the FDIC in paper format... these rules may file the appropriate forms with the FDIC in paper format. Instructions for continuing...) Previously filed exhibits, whether in paper or electronic format, may be incorporated by reference into an...

12 CFR 335.801 - Inapplicable SEC regulations; FDIC substituted regulations; additional information.

Code of Federal Regulations, 2011 CFR

2011-01-01

... a continuing hardship exemption under these rules may file the forms with the FDIC in paper format... these rules may file the appropriate forms with the FDIC in paper format. Instructions for continuing...) Previously filed exhibits, whether in paper or electronic format, may be incorporated by reference into an...

Understanding Educational Policy Formation: The Case of School Violence Policies in Israel

ERIC Educational Resources Information Center

Fast, Idit

2016-01-01

This study explores mechanisms underlying processes of educational policy formation. Previous studies have given much attention to processes of diffusion when accounting for educational policy formation. Less account has been given to the day-to-day institutional dynamics through which educational policies develop and change. Building on extensive…

Stratigraphic sections of the Phosphoria formation in Idaho, 1947-48, Part I

USGS Publications Warehouse

McKelvey, Vincent Ellis; Davidson, D.F.; O'Malley, F. W.; Smith, L.E.; Armstrong, F.C.; Sheldon, R.P.

1952-01-01

The Permian Phosphoria formation of the western states contains one of the world's largest reserves of phosphate. Although previous investigations (see especially Mansfield, 1927), including reconnaissance geologic mapping and sampling, established the location of most of the important deposits and their quality of scattered localities, they were not sufficiently detailed to permit a comparison of the merits of individual deposits or an appraisal of the reserves of phosphate rock that might be available under present economic conditions. Because the growing importance of the western phosphate deposits requires a better, more detailed understanding of their distribution and quality, the Geological Survey began in 1947 a comprehensive investigation, including (1) reconnaissance geologic mapping, mostly in Montana, of areas in which the Phosphoria formation could occur but where it had not previously been looked for or found; (2) geologic mapping, mostly in Montana, at a scale no smaller than 1:62,500, of several areas known to contain the Phosphoria formation but not previously mapped except in reconnaissance fashion; (3) geologic and topographic mapping, at a scale of 1:12,000, of some of the richest, thickest, and most accessible deposits; (4) measuring, describing, and sampling all beds of the phosphatic and shaly parts, and in some places the full thickness, of the Phosphoria formation and its stratigraphic equivalents at one or two localities per township over the entire field; (5) chemical and spectrographic analysis of the samples for phosphate, fluorine, minor metals, oil, and rock-forming constituents; and (6) petrologic and geochemical studies of the rocks and minerals of the formation. These studies are designed to define the regional and local geologic structures in which the phosphate bed lie, to provide a basis for the estimation of reserves of the inferred class over the entire region, and to determine the origin of the rocks and the elements contained in them. The data collected are not of the detail required to plan actual mining operations, but it is hoped they will guide industry in the selection of individual deposits worthy of further exploration. Most of the field work contemplated as a part of this investigation is now completed. Although the data will not be compiled or published in final form for some years to come, segments of the data, accompanied by little or no interpretation, will be published as preliminary maps or reports as they are assembled. The present report is the first of a series presenting in abbreviated form the description and analyses of the beds measured and sampled at various localities in southeastern Idaho (pl. 1). Companion reports presenting segments of the data from Montana, Wyoming, and Utah (Swanson and others, 1952, and McKelvey and others, 1952a and 1952b) are being released at the same time as this report, and others are in preparation.

Talking Physics: Two Case Studies on Short Answers and Self-explanation in Learning Physics

NASA Astrophysics Data System (ADS)

Badeau, Ryan C.

This thesis explores two case studies into the use of short answers and self-explanation to improve student learning in physics. The first set of experiments focuses on the role of short answer questions in the context of computer-based instruction. Through a series of six experiments, we compare and evaluate the performance of computer-assessed short answer questions versus multiple choice for training conceptual topics in physics, controlling for feedback between the two formats. In addition to finding overall similar improvements on subsequent student performance and retention, we identify unique differences in how students interact with the treatments in terms of time spent on feedback and performance on follow-up short answer assessment. In addition, we identify interactions between the level of interactivity of the training, question format, and student attitudinal ratings of each respective training. The second case study focuses on the use of worked examples in the context of multi-concept physics problems - which we call "synthesis problems." For this part of the thesis, four experiments were designed to evaluate the effectiveness of two instructional methods employing worked examples on student performance with synthesis problems; these instructional techniques, analogical comparison and self-explanation, have previously been studied primarily in the context of single-concept problems. As such, the work presented here represents a novel focus on extending these two techniques to this class of more complicated physics problem. Across the four experiments, both self-explanation and certain kinds of analogical comparison of worked examples significantly improved student performance on a target synthesis problem, with distinct improvements in recognition of the relevant concepts. More specifically, analogical comparison significantly improved student performance when the comparisons were invoked between worked synthesis examples. In contrast, similar comparisons between corresponding pairs of worked single-concept examples did not significantly improve performance. On a more complicated synthesis problem, self-explanation was significantly more effective than analogical comparison, potentially due to differences in how successfully students encoded the full structure of the worked examples. Finally, we find that the two techniques can be combined for additional benefit, with the trade-off of slightly more time-on-task.

Protein oxidative modifications during electrospray ionization: solution phase electrochemistry or corona discharge-induced radical attack?

PubMed

Boys, Brian L; Kuprowski, Mark C; Noël, James J; Konermann, Lars

2009-05-15

The exposure of solution-phase proteins to reactive oxygen species (ROS) causes oxidative modifications, giving rise to the formation of covalent +16 Da adducts. Electrospray ionization (ESI) mass spectrometry (MS) is the most widely used method for monitoring the extent of these modifications. Unfortunately, protein oxidation can also take place as an experimental artifact during ESI, such that it may be difficult to assess the actual level of oxidation in bulk solution. Previous work has demonstrated that ESI-induced oxidation is highly prevalent when operating at strongly elevated capillary voltage V(0) (e.g., +8 kV) and with oxygen nebulizer gas in the presence of a clearly visible corona discharge. Protein oxidation under these conditions is commonly attributed to OH radicals generated in the plasma of the discharge. On the other hand, charge balancing oxidation reactions are known to take place at the metal/liquid interface of the emitter. Previous studies have not systematically explored whether such electrochemical processes could be responsible for the formation of oxidative +16 Da adducts instead of (or in combination with) plasma-generated ROS. Using hemoglobin as a model system, this work illustrates the occurrence of extensive protein oxidation even under typical operating conditions (e.g., V(0) = 3.5 kV, N(2) nebulizer gas). Surprisingly, measurements of the current flowing in the ESI circuit demonstrate that a weak corona discharge persists for these relatively gentle settings. On the basis of comparative experiments with nebulizer gases of different dielectric strength, it is concluded that ROS generated under discharge conditions are solely responsible for ESI-induced protein oxidation. This result is corroborated through off-line electrolysis experiments designed to mimic the electrochemical processes taking place during ESI. Our findings highlight the necessity of using easily oxidizable internal standards in biophysical or biomedical ESI-MS studies where knowledge of protein oxidation in bulk solution is desired. Strategies for eliminating ESI-induced oxidation artifacts are discussed.

Suggested Format and Content of a Work Sample Manual: [With Examples].

ERIC Educational Resources Information Center

Wisconsin Univ. - Stout, Menomonie. Dept. of Rehabilitation and Manpower Services. Materials Development Center.

Work samples are job tasks used as a diagnostic tool in the evaluation of vocational rehabilitation clients. The manual was developed to provide a standardized format for the construction, administration, and interpretation of necessary information from work sample assessment techniques used by vocational evaluators. The outline is divided into…

Emerging Adults in Sweden: Identity Formation in the Light of Love, Work, and Family

ERIC Educational Resources Information Center

Frisen, Ann; Wangqvist, Maria

2011-01-01

In this study, the identity formation of emerging adults in Sweden was investigated in order to discover how identity issues concerning love, work and family are handled. The study group comprised 136 24- to 26-year-olds. The results revealed differences between men and women with regard to their position in the identity formation process. While…

Ionothermal Synthesis and Magnetic Studies of Novel Two-Dimensional Metal-Formate Frameworks

DOE Office of Scientific and Technical Information (OSTI.GOV)

Calderone, P.; Feygenson, M.; Forster, P.M.

2011-03-21

Five novel two-dimensional frameworks containing formate-bridged metal-centered octahedra are synthesized ionothermally from two ionic liquids previously unused as solvents in hybrid synthesis, 2-hydroxyethylammonium (HEA) formate, and 1-hydroxy-3-proplyammonium (HPA) formate. Templating effects of the cation from each ionic liquid drive the formation of different structures. [NH{sub 3}C{sub 2}H{sub 4}OH]{sub 2}[M(CHO{sub 2}){sub 4}] (1: M = Co, 2: M = Ni) exhibit the same stoichiometry and connectivity as their manganese analogue (3: M = Mn), but the manganese form exhibits a different topology from 1 and 2. [NH{sub 3}C{sub 3}H6OH][M(CHO{sub 2}){sub 3}(H{sub 2}O)] (4: M = Co, 5: M = Mn) weremore » synthesized using the HPA formate ionic liquid with a metal-formate connectivity related to those of 1-3. Canted antiferromagnetic ordering occurs at low temperatures (1: T{sub N} = 7.0 K, 2: T{sub N} = 4.6 K, 3: T{sub N} = 8.0 K, 4: T{sub N} = 7.0 K, 5: T{sub N} = 9.2 K), similar to the magnetic properties previously reported for other metal-formate hybrid materials.« less

Detergent-Mediated Formation of β-Hematin: Heme Crystallization Promoted by Detergents Implicates Nanostructure Formation for Use as a Biological Mimic

PubMed Central

2016-01-01

Hemozoin is a unique biomineral that results from the sequestration of toxic free heme liberated as a consequence of hemoglobin degradation in the malaria parasite. Synthetic neutral lipid droplets (SNLDs) and phospholipids were previously shown to support the rapid formation of β-hematin, abiological hemozoin, under physiologically relevant pH and temperature, though the mechanism by which heme crystallization occurs remains unclear. Detergents are particularly interesting as a template because they are amphiphilic molecules that spontaneously organize into nanostructures and have been previously shown to mediate β-hematin formation. Here, 11 detergents were investigated to elucidate the physicochemical properties that best recapitulate crystal formation in the parasite. A strong correlation between the detergent’s molecular structure and the corresponding kinetics of β-hematin formation was observed, where higher molecular weight polar chains promoted faster reactions. The larger hydrophilic chains correlated to the detergent’s ability to rapidly sequester heme into the lipophilic core, allowing for crystal nucleation to occur. The data presented here suggest that detergent nanostructures promote β-hematin formation in a similar manner to SNLDs and phospholipids. Through understanding mediator properties that promote optimal crystal formation, we are able to establish an in vitro assay to probe this drug target pathway. PMID:27175104

Current Experimental Basis for Modeling Ice Accretions on Swept Wings

NASA Technical Reports Server (NTRS)

Vargas, Mario

2005-01-01

This work presents a review of the experimental basis for modeling ice accretions on swept wings. Experimental work related to ice accretion physics on swept wings conducted between 1954 and 2004 is reviewed. Proposed models or explanations of scallop formations are singled out and discussed. Special emphasis is placed on reviewing the work done to determine the basic macroscopic mechanisms of scallop formation. The role of feather growth and its connection to scallop growth is discussed. Conceptual steps in modeling scallop formations are presented. Research elements needed for modeling are discussed.

Biglycan potentially regulates angiogenesis during fracture repair by altering expression and function of endostatin

PubMed Central

Myren, Maja; Kirby, David J.; Noonan, Megan L.; Maeda, Azusa; Owens, Rick T.; Ricard-Blum, Sylvie; Kram, Vardit; Kilts, Tina M.; Young, Marian F.

2016-01-01

The small proteoglycan biglycan (Bgn) is highly expressed in the organic matrix of bone and plays a role in bone formation. Previous work implicated Bgn in vessel growth during bone healing (1). By infusing barium sulfate (BaSO4) into WT and Bgn-deficient mice we discovered the positive effect of Bgn in modulating angiogenesis during fracture healing. Using micro-computed tomography angiography we found significant differences in the vessel size and volume among other parameters. To further understand the mechanistic basis for this, we explored the relationship between Bgn and the anti-angiogenic protein endostatin. Immunohistochemistry (IHC) showed co-localization of Bgn and endostatin in regions of bone formation, with increased endostatin staining in Bgn-KO compared to WT at 14 days post-fracture. To further elucidate the relationship between Bgn and endostatin, an endothelial cell tube formation assay was used. This study showed that endothelial cells treated with endostatin had significantly decreased vessel length and vessel branches compared to untreated cells, while cells treated with endostatin and Bgn at a 1:1 molar ratio had vessel length and vessel branches comparable to untreated cells. This indicated that Bgn was able to mitigate the inhibitory effect of endostatin on endothelial cell growth. In summary, these results suggest that Bgn is needed for proper blood vessel formation during fracture healing, and one mechanism by which Bgn impacts angiogenesis is through inhibition of endostatin. PMID:27072616

First-principles study of strain effect on the formation and electronic structures of oxygen vacancy in SrFeO2

NASA Astrophysics Data System (ADS)

Wei, Zhang; Jie, Huang

2016-05-01

Motivated by recent experimental observations of metallic conduction in the quasi-two-dimensional SrFeO2, we study the epitaxial strain effect on the formation and electronic structures of oxygen vacancy (Vo) by first-principles calculations. The bulk SrFeO2 is found to have the G-type antiferromagnetic ordering (G-AFM) at zero strain, which agrees with the experiment. Under compressive strain the bulk SrFeO2 keeps the G-AFM and has the trend of Mott insulator-metal transition. Different from most of the previous similar work about the strain effect on Vo, both the tensile strain and the compressive strain enhance the Vo formation. It is found that the competitions between the band energies and the electrostatic interactions are the dominant mechanisms in determining the Vo formation. We confirm that the Vo in SrFeO2 would induce the n-type conductivity where the donor levels are occupied by the delocalized d x 2-y 2 electrons. It is suggested that the vanishing of n-type conductivity observed by the Hall measurement on the strained films are caused by the shift of donor levels into the conduction band. These results would provide insightful information for the realization of metallic conduction in SrFeO2. Project supported by the Creative Plan Project of Nanjing Forest Police College, China (Grant Nos. 201512213045xy and 201512213007x).

Initial formation of calcite crystals in the thin prismatic layer with the periostracum of Pinctada fucata.

PubMed

Suzuki, Michio; Nakayama, Seiji; Nagasawa, Hiromichi; Kogure, Toshihiro

2013-02-01

Although the formation mechanism of calcite crystals in the prismatic layer has been studied well in many previous works, the initial state of calcite formation has not been observed in detail using electron microscopes. In this study, we report that the soft prismatic layer with transparent color (the thin prismatic layer) in the tip of the fresh shell of Pinctada fucata was picked up to observe the early calcification phase. A scanning electron microscope (SEM) image showed that the growth tip of the thin prismatic layer was covered by the periostracum, which was also where the initial formation of calcite crystals began. A cross-section containing the thin calcite crystals in the thin prismatic layer with the periostracum was made using a focused ion beam (FIB) system. In a transmission electron microscope (TEM) observation, the thin calcite crystal (thickness is about 1μm) on the periostracum was found to be a single crystal with the c-axis oriented perpendicular to the shell surface. On the other hand, many aggregated small particles consisting of bassanite crystals were observed in the periostracum suggesting the possibility that not only organic sulfate but also inorganic sulfates exist in the prismatic layer. These discoveries in the early calcification phase of the thin prismatic layer may help to clarify the mechanism of regulating the nucleation and orientation of the calcite crystal in the shell. Copyright © 2012 Elsevier Ltd. All rights reserved.

Ultra-thin multilayer capacitors.

DOE Office of Scientific and Technical Information (OSTI.GOV)

Renk, Timothy Jerome; Monson, Todd C.

2009-06-01

The fabrication of ultra-thin lanthanum-doped lead zirconium titanate (PLZT) multilayer ceramic capacitors (MLCCs) using a high-power pulsed ion beam was studied. The deposition experiments were conducted on the RHEPP-1 facility at Sandia National Laboratories. The goal of this work was to increase the energy density of ceramic capacitors through the formation of a multilayer device with excellent materials properties, dielectric constant, and standoff voltage. For successful device construction, there are a number of challenging requirements including achieving correct stoichiometric and crystallographic composition of the deposited PLZT, as well as the creation of a defect free homogenous film. This report detailsmore » some success in satisfying these requirements, although 900 C temperatures were necessary for PLZT perovskite phase formation. These temperatures were applied to a previously deposited multi-layer film which was then post-annealed to this temperature. The film exhibited mechanical distress attributable to differences in the coefficient of thermal expansion (CTE) of the various layers. This caused significant defects in the deposited films that led to shorts across devices. A follow-on single layer deposition without post-anneal produced smooth layers with good interface behavior, but without the perovskite phase formation. These issues will need to be addressed in order for ion beam deposited MLCCs to become a viable technology. It is possible that future in-situ heating during deposition may address both the CTE issue, and result in lowered processing temperatures, which in turn could raise the probability of successful MLCC formation.« less

The pronociceptive dorsal reticular nucleus contains mostly tonic neurons and shows a high prevalence of spontaneous activity in block preparation.

PubMed

Sousa, Mafalda; Szucs, Peter; Lima, Deolinda; Aguiar, Paulo

2014-04-01

Despite the importance and significant clinical impact of understanding information processing in the nociceptive system, the functional properties of neurons in many parts of this system are still unknown. In this work we performed whole cell patch-clamp recording in rat brain stem blocks to characterize the electrophysiological properties of neurons in the dorsal reticular nucleus (DRt), a region known to be involved in pronociceptive modulation. We also compared properties of DRt neurons with those in the adjacent parvicellular reticular nucleus and in neighboring regions outside the reticular formation. We found that neurons in the DRt and parvicellular reticular nucleus had similar electrophysiological properties and exhibited mostly toniclike firing patterns, whereas neurons outside the reticular formation showed a larger diversity of firing patterns. Interestingly, more than one-half of the neurons also showed spontaneous activity. While the general view of the reticular formation, being a loosely associated mesh of groups of neurons with diverse function, and earlier reports suggests more electrophysiological heterogeneity, we showed that this is indeed not the case. Our results indicate that functional difference of neurons in the reticular formation may mostly be determined by their connectivity profiles and not by their intrinsic electrophysiological properties. The dominance of tonic neurons in the DRt supports previous conclusions that these neurons encode stimulus intensity through their firing frequency, while the high prevalence of spontaneous activity most likely shapes nociceptive modulation by this brain stem region.

Resonant structure, formation and stability of the planetary system HD155358

NASA Astrophysics Data System (ADS)

Silburt, Ari; Rein, Hanno

2017-08-01

Two Jovian-sized planets are orbiting the star HD155358 near exact mean motion resonance (MMR) commensurability. In this work, we re-analyse the radial velocity (RV) data previously collected by Robertson et al. Using a Bayesian framework, we construct two models - one that includes and the other that excludes gravitational planet-planet interactions (PPIs). We find that the orbital parameters from our PPI and no planet-planet interaction (noPPI) models differ by up to 2σ, with our noPPI model being statistically consistent with previous results. In addition, our new PPI model strongly favours the planets being in MMR, while our noPPI model strongly disfavours MMR. We conduct a stability analysis by drawing samples from our PPI model's posterior distribution and simulating them for 109 yr, finding that our best-fitting values land firmly in a stable region of parameter space. We explore a series of formation models that migrate the planets into their observed MMR. We then use these models to directly fit to the observed RV data, where each model is uniquely parametrized by only three constants describing its migration history. Using a Bayesian framework, we find that a number of migration models fit the RV data surprisingly well, with some migration parameters being ruled out. Our analysis shows that PPIs are important to take into account when modelling observations of multiplanetary systems. The additional information that one can gain from interacting models can help constrain planet migration parameters.

Oxidative elimination of cyanotoxins: comparison of ozone, chlorine, chlorine dioxide and permanganate.

PubMed

Rodríguez, Eva; Onstad, Gretchen D; Kull, Tomas P J; Metcalf, James S; Acero, Juan L; von Gunten, Urs

2007-08-01

As the World Health Organization (WHO) progresses with provisional Drinking Water Guidelines of 1 microg/L for microcystin-LR and a proposed Guideline of 1 microg/L for cylindrospermopsin, efficient treatment strategies are needed to prevent cyanotoxins such as these from reaching consumers. A kinetic database has been compiled for the oxidative treatment of three cyanotoxins: microcystin-LR (MC-LR), cylindrospermopsin (CYN), and anatoxin-a (ANTX) with ozone, chlorine, chlorine dioxide and permanganate. This kinetic database contains rate constants not previously reported and determined in the present work (e.g. for permanganate oxidation of ANTX and chlorine dioxide oxidation of CYN and ANTX), together with previously published rate constants for the remaining oxidation processes. Second-order rate constants measured in pure aqueous solutions of these toxins could be used in a kinetic model to predict the toxin oxidation efficiency of ozone, chlorine, chlorine dioxide and permanganate when applied to natural waters. Oxidants were applied to water from a eutrophic Swiss lake (Lake Greifensee) in static-dose testing and dynamic time-resolved experiments to confirm predictions from the kinetic database, and to investigate the effects of a natural matrix on toxin oxidation and by-product formation. Overall, permanganate can effectively oxidize ANTX and MC-LR, while chlorine will oxidize CYN and MC-LR and ozone is capable of oxidizing all three toxins with the highest rate. The formation of trihalomethanes (THMs) in the treated water may be a restriction to the application of sufficiently high-chlorine doses.

Do supercontinents introvert or extrovert?: Sm-Nd isotope evidence

NASA Astrophysics Data System (ADS)

Brendan Murphy, J.; Damian Nance, R.

2003-10-01

In recent years, two end-member models for the formation of supercontinents have emerged. In the classical Wilson cycle, oceanic crust generated during supercontinent breakup (the interior ocean) is consumed during subsequent amalgamation so that the supercontinent turns “inside in” (introversion). Alternatively, following supercontinent breakup, the exterior margins of the dispersing continental fragments collide during reassembly so that the supercontinent turns “outside in” (extroversion). These end-member models can be distinguished by comparing the Sm-Nd crust-formation ages of accreted mafic complexes (e.g., ophiolites) in the collisional orogens formed during supercontinent assembly with the breakup age of the previous supercontinent. For supercontinents generated by introversion, these crust-formation ages postdate rifting of the previous supercontinent. For supercontinents generated by extroversion, the oceanic lithosphere consumed during reassembly predates breakup of the previous supercontinent, so that crust-formation ages of accreted mafic complexes are older than the age of rifting. In the Paleozoic Appalachian-Caledonide-Variscan orogen, a key collisional orogen in the assembly of Pangea, crust-formation ages of accretionary mafic complexes postdate the formation of the Iapetus Ocean (i.e., are younger than ca. 0.6 Ga), suggesting supercontinent reassembly by introversion. By contrast, the Neoproterozoic East African and Brasiliano orogens, which formed during the amalgamation of Gondwana, are characterized by mafic complexes with crust-formation ages (ca. 0.75 1.2 Ga) that predate the ca. 750 Ma breakup of Rodinia. Hence, these complexes must have formed from lithosphere in the exterior ocean that surrounded Rodinia, implying that this ocean was consumed during the amalgamation of Gondwana. These data indicate that Pangea and Gondwana were formed by introversion and extroversion, respectively, implying that supercontinents can be assembled by fundamentally distinct geodynamic processes.

Transcriptome Sequencing Reveals Wide Expression Reprogramming of Basal and Unknown Genes in Leptospira biflexa Biofilms

PubMed Central

Spangenberg, Lucía; Lopes Bastos, Bruno; Graña, Martín; Vasconcelos, Larissa; Almeida, Áurea; Greif, Gonzalo; Robello, Carlos; Ristow, Paula

2016-01-01

ABSTRACT The genus Leptospira is composed of pathogenic and saprophytic spirochetes. Pathogenic Leptospira is the etiological agent of leptospirosis, a globally spread neglected disease. A key ecological feature of some pathogenic species is their ability to survive both within and outside the host. For most leptospires, the ability to persist outside the host is associated with biofilm formation, a most important bacterial strategy to face and overcome hostile environmental conditions. The architecture and biochemistry of leptospiral biofilms are rather well understood; however, the genetic program underpinning biofilm formation remains mostly unknown. In this work, we used the saprophyte Leptospira biflexa as a model organism to assess over- and underrepresented transcripts during the biofilm state, using transcriptome sequencing (RNA-seq) technology. Our results showed that some basal biological processes like DNA replication and cell division are downregulated in the mature biofilm. Additionally, we identified significant expression reprogramming for genes involved in motility, sugar/lipid metabolism, and iron scavenging, as well as for outer membrane-encoding genes. A careful manual annotation process allowed us to assign molecular functions to many previously uncharacterized genes that are probably involved in biofilm metabolism. We also provided evidence for the presence of small regulatory RNAs in this species. Finally, coexpression networks were reconstructed to pinpoint functionally related gene clusters that may explain how biofilm maintenance is regulated. Beyond elucidating some genetic aspects of biofilm formation, this work reveals a number of pathways whose functional dissection may impact our understanding of leptospiral biology, in particular how these organisms adapt to environmental changes. IMPORTANCE In this work, we describe the first transcriptome based on RNA-seq technology focused on studying transcriptional changes associated with biofilm growth in a member of the genus Leptospira. As many pathogenic species of this genus can survive inside the host but also persist in environmental water, mostly forming biofilms, identifying the molecular basis of this capacity can impact the understanding of how leptospires are able to fulfill a complete life cycle that alternates between adaptation to the host and adaptation to hostile external environmental conditions. We identified several genes and regulatory networks that can be the kickoff for deepening understanding of the molecular mechanisms involving bacterial persistence via biofilm formation; understanding this is important for the future development of tools for controlling leptospirosis. PMID:27303713

Transcriptome Sequencing Reveals Wide Expression Reprogramming of Basal and Unknown Genes in Leptospira biflexa Biofilms.

PubMed

Iraola, Gregorio; Spangenberg, Lucía; Lopes Bastos, Bruno; Graña, Martín; Vasconcelos, Larissa; Almeida, Áurea; Greif, Gonzalo; Robello, Carlos; Ristow, Paula; Naya, Hugo

2016-01-01

The genus Leptospira is composed of pathogenic and saprophytic spirochetes. Pathogenic Leptospira is the etiological agent of leptospirosis, a globally spread neglected disease. A key ecological feature of some pathogenic species is their ability to survive both within and outside the host. For most leptospires, the ability to persist outside the host is associated with biofilm formation, a most important bacterial strategy to face and overcome hostile environmental conditions. The architecture and biochemistry of leptospiral biofilms are rather well understood; however, the genetic program underpinning biofilm formation remains mostly unknown. In this work, we used the saprophyte Leptospira biflexa as a model organism to assess over- and underrepresented transcripts during the biofilm state, using transcriptome sequencing (RNA-seq) technology. Our results showed that some basal biological processes like DNA replication and cell division are downregulated in the mature biofilm. Additionally, we identified significant expression reprogramming for genes involved in motility, sugar/lipid metabolism, and iron scavenging, as well as for outer membrane-encoding genes. A careful manual annotation process allowed us to assign molecular functions to many previously uncharacterized genes that are probably involved in biofilm metabolism. We also provided evidence for the presence of small regulatory RNAs in this species. Finally, coexpression networks were reconstructed to pinpoint functionally related gene clusters that may explain how biofilm maintenance is regulated. Beyond elucidating some genetic aspects of biofilm formation, this work reveals a number of pathways whose functional dissection may impact our understanding of leptospiral biology, in particular how these organisms adapt to environmental changes. IMPORTANCE In this work, we describe the first transcriptome based on RNA-seq technology focused on studying transcriptional changes associated with biofilm growth in a member of the genus Leptospira. As many pathogenic species of this genus can survive inside the host but also persist in environmental water, mostly forming biofilms, identifying the molecular basis of this capacity can impact the understanding of how leptospires are able to fulfill a complete life cycle that alternates between adaptation to the host and adaptation to hostile external environmental conditions. We identified several genes and regulatory networks that can be the kickoff for deepening understanding of the molecular mechanisms involving bacterial persistence via biofilm formation; understanding this is important for the future development of tools for controlling leptospirosis.

Formation of Ice Giant Satellites During Thommes Model Mirgration

NASA Astrophysics Data System (ADS)

Fuse, Christopher; Spiegelberg, Josephine

2018-01-01

Inconsistencies between ice giant planet characteristics and classic planet formation theories have led to a re-evaluation of the formation of the outer Solar system. Thommes model migration delivers proto-Uranus and Neptune from orbits interior to Saturn to their current locations. The Thommes model has also been able to reproduce the large Galilean and Saturnian moons via interactions between the proto-ice giants and the gas giant moon disks.As part of a series of investigations examining the effects of Thommes model migration on the formation of moons, N-body simulations of the formation of the Uranian and Neptunian satellite systems were performed. Previous research has yielded conflicting results as to whether satellite systems are stable during planetary migration. Some studies, such as Beaugé (2002) concluded that the system was not stable over the proposed duration of migration. Conversely, Fuse and Neville (2011) and Yokoyama et al. (2011) found that moons were retained, though the nature of the resulting system was heavily influenced by interactions with planetesimals and other large objects. The results of the current study indicate that in situ simulations of the Uranus and Neptune systems can produce stable moons. Whether with current orbital parameters or located at pre-migration, inner Solar system semi-major axes, the simulations end with 5.8 ± 0.15 or 5.9 ± 0.7 regular satellites around Uranus and Neptune, respectively. Preliminary simulations of a proto-moon disk around a single planet migrating via the Thommes model have failed to retain moons. Furthermore, simulations of ejection of the current Uranian satellite system retained at most one moon. Thus, for the Thommes model to be valid, it is likely that moon formation did not begin until after migration ended. Future work will examine the formation of gas and ice giant moons through other migration theories, such as the Nice model (Tsiganis et al. 2006).

Formative Self-Assessment College Classes Improves Self-Regulation and Retention in First/Second Year Community College Students

ERIC Educational Resources Information Center

Mahlberg, Jamie

2015-01-01

This research examined the influence formative self-assessment had on first/second year community college student self-regulatory practices. Previous research has shown that the ability to regulate one's learning activities can improve performance in college classes, and it has long been known that the use of formative assessment improves…

The Effect of Question Format and Task Difficulty on Reasoning Strategies and Diagnostic Performance in Internal Medicine Residents

ERIC Educational Resources Information Center

Heemskerk, Laura; Norman, Geoff; Chou, Sophia; Mintz, Marcy; Mandin, Henry; McLaughlin, Kevin

2008-01-01

Background: Previous studies have suggested an association between reasoning strategies and diagnostic success, but the influence on this relationship of variables such as question format and task difficulty, has not been studied. Our objective was to study the association between question format, task difficulty, reasoning strategies and…

Investigating a method of producing "red and dead" galaxies

NASA Astrophysics Data System (ADS)

Skory, Stephen

2010-08-01

In optical wavelengths, galaxies are observed to be either red or blue. The overall color of a galaxy is due to the distribution of the ages of its stellar population. Galaxies with currently active star formation appear blue, while those with no recent star formation at all (greater than about a Gyr) have only old, red stars. This strong bimodality has lead to the idea of star formation quenching, and various proposed physical mechanisms. In this dissertation, I attempt to reproduce with Enzo the results of Naab et al. (2007), in which red and dead galaxies are formed using gravitational quenching, rather than with one of the more typical methods of quenching. My initial attempts are unsuccessful, and I explore the reasons why I think they failed. Then using simpler methods better suited to Enzo + AMR, I am successful in producing a galaxy that appears to be similar in color and formation history to those in Naab et al. However, quenching is achieved using unphysically high star formation efficiencies, which is a different mechanism than Naab et al. suggests. Preliminary results of a much higher resolution, follow-on simulation of the above show some possible contradiction with the results of Naab et al. Cold gas is streaming into the galaxy to fuel starbursts, while at a similar epoch the galaxies in Naab et al. have largely already ceased forming stars in the galaxy. On the other hand, the results of the high resolution simulation are qualitatively similar to other works in the literature that show a somewhat different gravitational quenching mechanism than Naab et al. I also discuss my work using halo finders to analyze simulated cosmological data, and my work improving the Enzo/AMR analysis tool "yt". This includes two parallelizations of the halo finder HOP (Eisenstein and Hut, 1998) which allows analysis of very large cosmological datasets on parallel machines. The first version is "yt-HOP," which works well for datasets between about 2563 and 5123 particles, but has memory bottlenecks as the datasets get larger. These bottlenecks inspired the second version, "Parallel HOP," which is a fully parallelized method and implementation of HOP that has worked on datasets with more than 20483 particles on hundreds of processing cores. Both methods are described in detail, as are the various effects of performance-related runtime options. Additionally, both halo finders are subjected to a full suite of performance benchmarks varying both dataset sizes and computational resources used. I conclude with descriptions of four new tools I added to yt. A Parallel Structure Function Generator allows analysis of two-point functions, such as correlation functions, using memory- and workload-parallelism. A Parallel Merger Tree Generator leverages the parallel halo finders in yt, such as Parallel HOP, to build the merger tree of halos in a cosmological simulation, and outputs the result to a SQLite database for simple and powerful data extraction. A Star Particle Analysis toolkit takes a group of star particles and can output the rate of formation as a function of time, and/or a synthetic Spectral Energy Distribution (S.E.D.) using the Bruzual and Charlot (2003) data tables. Finally, a Halo Mass Function toolkit takes as input a list of halo masses and can output the halo mass function for the halos, as well as an analytical fit for those halos using several previously published fits.

Biosynthesis of Jasmine Lactone in Tea ( Camellia sinensis) Leaves and Its Formation in Response to Multiple Stresses.

PubMed

Zeng, Lanting; Zhou, Ying; Fu, Xiumin; Liao, Yinyin; Yuan, Yunfei; Jia, Yongxia; Dong, Fang; Yang, Ziyin

2018-04-18

Jasmine lactone has a potent odor that contributes to the fruity, sweet floral aroma of tea ( Camellia sinensis). Our previous study demonstrated that jasmine lactone was mostly accumulated at the turnover stage of the oolong tea manufacturing process. This study investigates the previously unknown mechanism of formation of jasmine lactone in tea leaves exposed to multiple stresses occurring during the growth and manufacturing processes. Both continuous mechanical damage and the dual stress of low temperature and mechanical damage enhanced jasmine lactone accumulation in tea leaves. In addition, only one pathway, via hydroperoxy fatty acids from unsaturated fatty acid, including linoleic acid and α-linolenic acid, under the action of lipoxygenases (LOXs), especially CsLOX1, was significantly affected by these stresses. This is the first evidence of the mechanism of jasmine lactone formation in tea leaves and is a characteristic example of plant volatile formation in response to dual stress.

Nuclear Reactions in the Crusts of Accreting Neutron Stars

DOE Office of Scientific and Technical Information (OSTI.GOV)

Lau, Rita; Beard, Mary; Gupta, Sanjib S.

X-ray observations of transiently accreting neutron stars during quiescence provide information about the structure of neutron star crusts and the properties of dense matter. Interpretation of the observational data requires an understanding of the nuclear reactions that heat and cool the crust during accretion and define its nonequilibrium composition. We identify here in detail the typical nuclear reaction sequences down to a depth in the inner crust where the mass density ismore » $$\\rho =2\\times {10}^{12}\\,{\\rm{g}}\\,{\\mathrm{cm}}^{-3}$$ using a full nuclear reaction network for a range of initial compositions. The reaction sequences differ substantially from previous work. We find a robust reduction of crust impurity at the transition to the inner crust regardless of initial composition, though shell effects can delay the formation of a pure crust somewhat to densities beyond $$\\rho =2\\times {10}^{12}\\,{\\rm{g}}\\,{\\mathrm{cm}}^{-3}$$. This naturally explains the small inner crust impurity inferred from observations of a broad range of systems. The exception are initial compositions with A ≥ 102 nuclei, where the inner crust remains impure with an impurity parameter of Q imp ≈ 20 owing to the N = 82 shell closure. In agreement with previous work, we find that nuclear heating is relatively robust and independent of initial composition, while cooling via nuclear Urca cycles in the outer crust depends strongly on initial composition. As a result, this work forms a basis for future studies of the sensitivity of crust models to nuclear physics and provides profiles of composition for realistic crust models.« less

Mining Claim Activity on Federal Land for the Period 1976 through 2003

USGS Publications Warehouse

Causey, J. Douglas

2005-01-01

Previous reports on mining claim records provided information and statistics (number of claims) using data from the U.S. Bureau of Land Management's (BLM) Mining Claim Recordation System. Since that time, BLM converted their mining claim data to the Legacy Repost 2000 system (LR2000). This report describes a process to extract similar statistical data about mining claims from LR2000 data using different software and procedures than were used in the earlier work. A major difference between this process and the previous work is that every section that has a mining claim record is assigned a value. This is done by proportioning a claim between each section in which it is recorded. Also, the mining claim data in this report includes all BLM records, not just the western states. LR2000 mining claim database tables for the United States were provided by BLM in text format and imported into a Microsoft? Access2000 database in January, 2004. Data from two tables in the BLM LR2000 database were summarized through a series of database queries to determine a number that represents active mining claims in each Public Land Survey (PLS) section for each of the years from 1976 to 2002. For most of the area, spatial databases are also provided. The spatial databases are only configured to work with the statistics provided in the non-spatial data files. They are suitable for geographic information system (GIS)-based regional assessments at a scale of 1:100,000 or smaller (for example, 1:250,000).

CDGPS-Based Relative Navigation for Multiple Spacecraft

NASA Technical Reports Server (NTRS)

Mitchell, Megan Leigh

2004-01-01

This thesis investigates the use of Carrier-phase Differential GPS (CDGPS) in relative navigation filters for formation flying spacecraft. This work analyzes the relationship between the Extended Kalman Filter (EKF) design parameters and the resulting estimation accuracies, and in particular, the effect of the process and measurement noises on the semimajor axis error. This analysis clearly demonstrates that CDGPS-based relative navigation Kalman filters yield good estimation performance without satisfying the strong correlation property that previous work had associated with "good" navigation filters. Several examples are presented to show that the Kalman filter can be forced to create solutions with stronger correlations, but these always result in larger semimajor axis errors. These linear and nonlinear simulations also demonstrated the crucial role of the process noise in determining the semimajor axis knowledge. More sophisticated nonlinear models were included to reduce the propagation error in the estimator, but for long time steps and large separations, the EKF, which only uses a linearized covariance propagation, yielded very poor performance. In contrast, the CDGPS-based Unscented Kalman relative navigation Filter (UKF) handled the dynamic and measurement nonlinearities much better and yielded far superior performance than the EKF. The UKF produced good estimates for scenarios with long baselines and time steps for which the EKF would diverge rapidly. A hardware-in-the-loop testbed that is compatible with the Spirent Simulator at NASA GSFC was developed to provide a very flexible and robust capability for demonstrating CDGPS technologies in closed-loop. This extended previous work to implement the decentralized relative navigation algorithms in real time.

Nuclear Reactions in the Crusts of Accreting Neutron Stars

DOE PAGES

Lau, Rita; Beard, Mary; Gupta, Sanjib S.; ...

2018-05-24

X-ray observations of transiently accreting neutron stars during quiescence provide information about the structure of neutron star crusts and the properties of dense matter. Interpretation of the observational data requires an understanding of the nuclear reactions that heat and cool the crust during accretion and define its nonequilibrium composition. We identify here in detail the typical nuclear reaction sequences down to a depth in the inner crust where the mass density ismore » $$\\rho =2\\times {10}^{12}\\,{\\rm{g}}\\,{\\mathrm{cm}}^{-3}$$ using a full nuclear reaction network for a range of initial compositions. The reaction sequences differ substantially from previous work. We find a robust reduction of crust impurity at the transition to the inner crust regardless of initial composition, though shell effects can delay the formation of a pure crust somewhat to densities beyond $$\\rho =2\\times {10}^{12}\\,{\\rm{g}}\\,{\\mathrm{cm}}^{-3}$$. This naturally explains the small inner crust impurity inferred from observations of a broad range of systems. The exception are initial compositions with A ≥ 102 nuclei, where the inner crust remains impure with an impurity parameter of Q imp ≈ 20 owing to the N = 82 shell closure. In agreement with previous work, we find that nuclear heating is relatively robust and independent of initial composition, while cooling via nuclear Urca cycles in the outer crust depends strongly on initial composition. As a result, this work forms a basis for future studies of the sensitivity of crust models to nuclear physics and provides profiles of composition for realistic crust models.« less

SDSS-IV MaNGA: modelling the metallicity gradients of gas and stars - radially dependent metal outflow versus IMF

NASA Astrophysics Data System (ADS)

Lian, Jianhui; Thomas, Daniel; Maraston, Claudia; Goddard, Daniel; Parikh, Taniya; Fernández-Trincado, J. G.; Roman-Lopes, Alexandre; Rong, Yu; Tang, Baitian; Yan, Renbin

2018-05-01

In our previous work, we found that only two scenarios are capable of reproducing the observed integrated mass-metallicity relations for the gas and stellar components of local star-forming galaxies simultaneously. One scenario invokes a time-dependent metal outflow loading factor with stronger outflows at early times. The other scenario uses a time-dependent initial mass function (IMF) slope with a steeper IMF at early times. In this work, we extend our study to investigate the radial profile of gas and stellar metallicity in local star-forming galaxies using spatially resolved spectroscopic data from the SDSS-IV MaNGA survey. We find that most galaxies show negative gradients in both gas and stellar metallicity with steeper gradients in stellar metallicity. The stellar metallicity gradients tend to be mass dependent with steeper gradients in more massive galaxies while no clear mass dependence is found for the gas metallicity gradient. Then we compare the observations with the predictions from a chemical evolution model of the radial profiles of gas and stellar metallicities. We confirm that the two scenarios proposed in our previous work are also required to explain the metallicity gradients. Based on these two scenarios, we successfully reproduce the radial profiles of gas metallicity, stellar metallicity, stellar mass surface density, and star formation rate surface density simultaneously. The origin of the negative gradient in stellar metallicity turns out to be driven by either radially dependent metal outflow or IMF slope. In contrast, the radial dependence of the gas metallicity is less constrained because of the degeneracy in model parameters.

Fire-scar formation in Jeffrey pine - mixed conifer forests in the Sierra San Pedro Martir, Mexico

Treesearch

Scott L. Stephens; Danny L. Fry; Brandon M. Collins; Carl N. Skinner; Ernesto Franco-Vizcaino; Travis J. Freed

2010-01-01

Little is known about the probability of fire-scar formation. In this study, we examined all mixed conifer trees for fire-scar formation in a 16 ha watershed that burned as part of a 2003 wildfire in Sierra San Pedro Ma´rtir National Park (SSPM), Mexico. In addition, we examine the probability of fire-scar formation in relation to the previous fire interval in forests...

In situ photoacoustic characterization for porous silicon growing: Detection principles

NASA Astrophysics Data System (ADS)

Ramirez-Gutierrez, C. F.; Castaño-Yepes, J. D.; Rodriguez-García, M. E.

2016-05-01

There are a few methodologies for monitoring the in-situ formation of Porous Silicon (PS). One of the methodologies is photoacoustic. Previous works that reported the use of photoacoustic to study the PS formation do not provide the physical explanation of the origin of the signal. In this paper, a physical explanation of the origin of the photoacoustic signal during the PS etching is provided. The incident modulated radiation and changes in the reflectance are taken as thermal sources. In this paper, a useful methodology is proposed to determine the etching rate, porosity, and refractive index of a PS film by the determination of the sample thickness, using scanning electron microscopy images. This method was developed by carrying out two different experiments using the same anodization conditions. The first experiment consisted of growth of the samples with different etching times to prove the periodicity of the photoacoustic signal, while the second one considered the growth samples using three different wavelengths that are correlated with the period of the photoacoustic signal. The last experiment showed that the period of the photoacoustic signal is proportional to the laser wavelength.

Modifying ceria (111) with a TiO2 nanocluster for enhanced reactivity.

PubMed

Nolan, Michael

2013-11-14

Modification of ceria catalysts is of great interest for oxidation reactions such as oxidative dehydrogenation of alcohols. Improving the reactivity of ceria based catalysts for these reactions means that they can be run at lower temperatures and density functional theory (DFT) simulations of new structures and compositions are proving valuable in the development of these catalysts. In this paper, we have used DFT+U (DFT corrected for on-site Coulomb interactions) to examine the reactivity of a novel modification of ceria, namely, modifying with TiO2, using the example of a Ti2O4 species adsorbed on the ceria (111) surface. The oxygen vacancy formation energy in the Ti2O4-CeO2 system is significantly reduced over the bare ceria surfaces, which together with previous work on ceria-titania indicates that the presence of the interface favours oxygen vacancy formation. The energy gain upon hydrogenation of the catalyst, which is the rate determining step in oxidative dehydrogenation, further points to the improved oxidation power of this catalyst structure.

Blastema induction in aneurogenic state and Prrx-1 regulation by MMPs and FGFs in Ambystoma mexicanum limb regeneration.

PubMed

Satoh, Akira; makanae, Aki; Hirata, Ayako; Satou, Yutaka

2011-07-15

Urodele amphibians can regenerate amputated limbs. It has been considered that differentiated dermal tissues generate multipotent and undifferentiated cells called blastema cells during limb regeneration. In early phases of limb regeneration, blastema cells are induced by nerves and the apical epithelial cap (AEC). We had previously investigated the role of neurotrophic factors in blastema or blastema-like formation consisting of Prrx-1 positive cells. A new system suitable for investigating early phases of limb regeneration, called the accessory limb model (ALM), was recently developed. In this study, we performed a comparative transcriptome analysis between a blastema and wound using ALM. Matrix metalloproteinase (MMP) and fibroblast growth factor (FGF) signaling components were observed to be predominantly expressed in ALM blastema cells. Furthermore, we found that MMP activity induced a blastema marker gene, Prrx-1, in vitro, and FGF signaling pathways worked in coordination to maintain Prrx-1 expression and ALM blastema formation. Furthermore, we demonstrated that these two activities were sufficient to induce an ALM blastema in the absence of a nerve in vivo. Copyright © 2011 Elsevier Inc. All rights reserved.

An in vivo study of Cdh1/APC in breast cancer formation

PubMed Central

Fujita, Takeo; Liu, Weijun; Doihara, Hiroyoshi; Wan, Yong

2017-01-01

Dysregulation of the ubiquitin-proteasome system (UPS) has been implicated in several types of tumorigenesis. Our previous studies have shown the potential role of Cdh1/APC in regulating tumor formation via governing the Skp2-p27-cyclinE/CDK2 axis. In this work, we utilized a xenograft mouse breast cancer model to identify the mechanism by which Cdh1/APC potentially suppresses tumor growth in vivo. Here, we report that depletion of Cdh1 results in a significant enhancement of the breast tumor proliferation, while elevated Cdh1 leads to suppression of breast tumor growth. Analysis of breast tissue arrays has indicated that higher levels of Cdh1 are associated with normal breast epithelial tissues whereas lower Skp2 expression and elevated p27 levels are detected. Conversely, the percentage of breast cancer tissues stained positive for Cdh1 and p27 are significantly lower with higher Skp2 levels. Thus, the E3 ligase, Cdh1/APC, may inhibit breast tumor growth via regulating Skp2-p27 mediated cell cycle progression. PMID:19350629

Cux1 and Cux2 regulate dendritic branching, spine morphology and synapses of the upper layer neurons of the cortex

PubMed Central

Cubelos, Beatriz; Sebastián-Serrano, Alvaro; Beccari, Leonardo; Calcagnotto, Maria Elisa; Cisneros, Elsa; Kim, Seonhee; Dopazo, Ana; Alvarez-Dolado, Manuel; Redondo, Juan Miguel; Bovolenta, Paola; Walsh, Christopher A.; Nieto, Marta

2010-01-01

Summary Dendrite branching and spine formation determines the function of morphologically distinct and specialized neuronal subclasses. However, little is known about the programs instructing specific branching patterns in vertebrate neurons and whether such programs influence dendritic spines and synapses. Using knockout and knockdown studies combined with morphological, molecular and electrophysiological analysis we show that the homeobox Cux1 and Cux2 are intrinsic and complementary regulators of dendrite branching, spine development and synapse formation in layer II–III neurons of the cerebral cortex. Cux genes control the number and maturation of dendritic spines partly through direct regulation of the expression of Xlr3b and Xlr4b, chromatin remodeling genes previously implicated in cognitive defects. Accordingly, abnormal dendrites and synapses in Cux2−/− mice correlate with reduced synaptic function and defects in working memory. These demonstrate critical roles of Cux in dendritogenesis and highlight novel subclass-specific mechanisms of synapse regulation that contribute to the establishment of cognitive circuits. PMID:20510857

TEFM is a potent stimulator of mitochondrial transcription elongation in vitro

PubMed Central

Posse, Viktor; Shahzad, Saba; Falkenberg, Maria; Hällberg, B. Martin; Gustafsson, Claes M.

2015-01-01

A single-subunit RNA polymerase, POLRMT, transcribes the mitochondrial genome in human cells. Recently, a factor termed as the mitochondrial transcription elongation factor, TEFM, was shown to stimulate transcription elongation in vivo, but its effect in vitro was relatively modest. In the current work, we have isolated active TEFM in recombinant form and used a reconstituted in vitro transcription system to characterize its activities. We show that TEFM strongly promotes POLRMT processivity as it dramatically stimulates the formation of longer transcripts. TEFM also abolishes premature transcription termination at conserved sequence block II, an event that has been linked to primer formation during initiation of mtDNA synthesis. We show that POLRMT pauses at a wide range of sites in a given DNA sequence. In the absence of TEFM, this leads to termination; however, the presence of TEFM abolishes this effect and aids POLRMT in continuation of transcription. Further, we show that TEFM substantially increases the POLRMT affinity to an elongation-like DNA:RNA template. In combination with previously published in vivo observations, our data establish TEFM as an essential component of the mitochondrial transcription machinery. PMID:25690892

The Extratropical Tropopause Inversion Layer

NASA Astrophysics Data System (ADS)

Ming, Alison; Haynes, Peter

2013-04-01

The extratropical tropopause inversion layer (TIL) is studied by analyzing numerical simulations with a dry idealized global circulation model. The model temperature field is relaxed towards different restoration profiles. We demonstrate that in simulations with the Held and Suarez restoration profile, a TIL is present in the steady state, whereas for a different restoration profile no TIL arises. Neither restoration profile includes a TIL-like structure and if an enhancement in the static stability occurs, it is a result of the model dynamics. We consider the mechanisms by which the TIL forms following previous work in attributing the formation to the structure of the residual circulation, but by further examining the relation of the residual circulation to the structure of the Eliassen-Palm flux convergence using the downward control principle. The presence of two separate regions of convergence of the Eliassen-Palm flux, one in the troposphere and the other in the stratosphere, is found to be necessary to the formation of the TIL. We also discuss the relations to other theories that emphasize the role of vertical gradients in radiatively active species.

Interaction of Vortex Ring with Cutting Plate

NASA Astrophysics Data System (ADS)

Musta, Mustafa

2015-11-01

The interaction of a vortex ring impinging on a thin cutting plate was made experimentally using Volumetric 3-component Velocitmetry (v3v) technique. The vortex rings were generated with piston-cylinder vortex ring generator using piston stroke-to-diameter ratios and Re at 2-3 and 1500 - 3000, respectively. The cutting of vortex rings below center line leads to the formation of secondary vortices on each side of the plate which is look like two vortex rings, and a third vortex ring propagates further downstream in the direction of the initial vortex ring, which is previously showed by flow visualization study of Weigand (1993) and called ``trifurcation''. Trifurcation is very sensitive to the initial Reynolds number and the position of the plate with respect to the vortex ring generator pipe. The present work seeks more detailed investigation on the trifurcation using V3V technique. Conditions for the formation of trifurcation is analyzed and compared with Weigand (1993). The formed secondary vortex rings and the propagation of initial vortex ring in the downstream of the plate are analyzed by calculating their circulation, energy and trajectories.

Generalization of Filament Braiding Model for Amyloid Fibril Assembly

NASA Astrophysics Data System (ADS)

Pope, Maighdlin; Ionescu-Zanetti, Cristian; Khurana, Ritu; Carter, Sue

2001-03-01

Research into the formation of amyloid fibrils is motivated by their association with several prominent diseases, among these Alzheimer's Disease, Parkinson's Disease and amyloidosis. Previous work in monitering the aggregation of immunoglobulin light chains to form amyloid fibrils suggests a braided structure where filaments and protofibrils wind together to form Type I and Type II fibrils. Non-contact atomic force microscopy is used to image and explore the kinetics of several other amyloid fibril forming proteins in an effort to generalize the filament braiding model. Included in this study are insulin and the B1 domain of G. Both of these have been shown to form fibrils in vitro. Alpha-synuclein is also included in this study. It is involved in the formation of Lewy bodies in Parkinson's Disease. The fourth protein used in this comparitive study is human amylin that is the cause of a systemic amyloidosis. Results from these four proteins and their associated fibrils are compared to the Ig light chain fibril structure in an effort to show the universality of the filament braiding model.

Reaction-diffusion systems and external morphogen gradients: the two-dimensional case, with an application to skeletal pattern formation.

PubMed

Glimm, Tilmann; Zhang, Jianying; Shen, Yun-Qiu; Newman, Stuart A

2012-03-01

We investigate a reaction-diffusion system consisting of an activator and an inhibitor in a two-dimensional domain. There is a morphogen gradient in the domain. The production of the activator depends on the concentration of the morphogen. Mathematically, this leads to reaction-diffusion equations with explicitly space-dependent terms. It is well known that in the absence of an external morphogen, the system can produce either spots or stripes via the Turing bifurcation. We derive first-order expansions for the possible patterns in the presence of an external morphogen and show how both stripes and spots are affected. This work generalizes previous one-dimensional results to two dimensions. Specifically, we consider the quasi-one-dimensional case of a thin rectangular domain and the case of a square domain. We apply the results to a model of skeletal pattern formation in vertebrate limbs. In the framework of reaction-diffusion models, our results suggest a simple explanation for some recent experimental findings in the mouse limb which are much harder to explain in positional-information-type models.

Ankaramite: A New Type of High-Magnesium and High-Calcium Primitive Melt in the Magnitogorsk Island-Arc Zone (Southern Urals)

NASA Astrophysics Data System (ADS)

Pushkarev, E. V.; Ryazancev, A. V.; Gottman, I. A.; Degtyarev, K. E.; Kamenetsky, V. S.

2018-04-01

This work describes the geological position, mineral and chemical composition of high-Mg effusive ankaramites occurring as dykes and lava flows. They were found in the mélange zone of the western margin of the Magnitogorsk island arc zone in the Southern Urals. Data on the liquidus association of phenocrysts and on the composition of the matrix of effusives are given. According to the data obtained, the conclusion was drawn that the ankaramites studied can be attributed to the primary island arc melts, which were not subject to essential differentiation. This type of effusives has not been distinguished previously among island arc volcanogenic formations of the Urals. It is shown that ankaramites can be considered to be primary melts parental for dunite-clinopyroxenites-gabbro complexes of Ural-Alaskan type. The occurrence of ankaramites in the Paleozoic island arc formations of the Urals indicates the wehrlite composition of the mantle as the reason for the extremely wide development of wehrlites and clinopyroxenites in different mafic-ultramafic complexes of the Urals.

WURCS 2.0 Update To Encapsulate Ambiguous Carbohydrate Structures.

PubMed

Matsubara, Masaaki; Aoki-Kinoshita, Kiyoko F; Aoki, Nobuyuki P; Yamada, Issaku; Narimatsu, Hisashi

2017-04-24

Accurate representation of structural ambiguity is important for storing carbohydrate structures containing varying levels of ambiguity in the literature and databases. Although many representations for carbohydrates have been developed in the past, a generalized but discrete representation format did not exist. We had previously developed the Web3 Unique Representation of Carbohydrate Structures (WURCS) in an attempt to define a generalizable and unique linear representation for carbohydrate structures. However, it lacked sufficient rules to uniquely describe ambiguous structures. In this work, we updated WURCS to handle such ambiguous monosaccharide structures. In particular, to handle structural ambiguity around (potential) carbonyl groups incidental to the carbohydrate analysis, we defined a representation of backbone carbons containing atomic-level ambiguity. As a result, we show that WURCS 2.0 can represent a wider variety of carbohydrate structures containing ambiguous monosaccharides, such as those whose ring closure is undefined or whose anomeric information is only known. This new format provides a representation of carbohydrates that was not possible before, and it is currently being used by the International Glycan Structure Repository GlyTouCan.

Pentahydroxyscirpene—Producing Strains, Formation In Planta, and Natural Occurrence

PubMed Central

Varga, Elisabeth; Wiesenberger, Gerlinde; Fruhmann, Philipp; Malachová, Alexandra; Svoboda, Thomas; Lemmens, Marc; Adam, Gerhard; Berthiller, Franz

2016-01-01

Trichothecenes are a class of structurally diverse mycotoxins with more than 200 naturally occurring compounds. Previously, a new compound, pentahydroxyscirpene (PHS), was reported as a byproduct of a nivalenol producing Fusarium strain, IFA189. PHS contains a hydroxy group at C-8 instead of the keto group of type B trichothecenes. In this work, we demonstrate that IFA189 belongs to the species Fusarium kyushuense using molecular tools. Production of PHS in vitro was also observed for several isolates of other Fusarium species producing nivalenol. Furthermore, we report the formation of 4-acetyl-PHS by F. kyushuense on inoculated rice. Wheat ears of the variety Remus were infected with IFA189 and the in planta production of PHS was confirmed. Natural occurrence of PHS was verified in barley samples from the Czech Republic using a liquid chromatographic-tandem mass spectrometric method validated for this purpose. Toxicity of PHS to wheat ribosomes was evaluated with a coupled in vitro transcription and translation assay, which showed that PHS inhibits protein biosynthesis slightly less than nivalenol and deoxynivalenol. PMID:27754401

UNDERSTANDING PCDD/F FORMATION AND SOURCES

EPA Science Inventory

Recent work at the U. S. EPA has examined fundamental concepts regarding formation and minimization of polychlorinated dibenzo-p-dioxins and dibenzofurans (PCDDs/Fs) in combustion scenarios. This paper summarizes some of these main findings, drawing on work from multiple studies....

Preliminary appraisal of gravity and magnetic data of Syncline Ridge, western Yucca Flat, Nevada Test Site, Nye County, Nevada

USGS Publications Warehouse

Ponce, David A.; Hanna, William F.

1982-01-01

A gravity and magnetic study of the Syncline Ridge area was conducted as part of an investigation of argillite rocks of the Eleana Formation under consideration as a medium for the possible storage of high-level radioactive waste. Bouguer gravity anomaly data, viewed in light of densities obtained by gamma-gamma logs and previous work of D. L. Healey (1968), delineate two regions of steep negative gradient where Cenozoic rocks and sediments are inferred to abruptly thicken: (1) the western third of the study area where Tertiary volcanic rocks are extensively exposed and (2) the northeast corner of the area where Quaternary alluvium is exposed and where volcanic rocks are inferred to occur at depth. In the remainder of the area, a region extending contiguously from Mine Mountain northwestward through Syncline Ridge to the Eleana Range, the gravity data indicate that the Eleana Formation, where not exposed, is buried at depths of less than about 200 m, except in a limited area of exposed older Paleozoic rocks on Mine Mountain. Quaternary alluvium and Tertiary volcanic rocks are inferred to occur in this region as veneers or shallow dishes of deposit on Tippipah Limestone or Eleana Formation. Low-level aeromagnetic anomaly data, covering the western two-thirds of the study area, delineate relatively magnetic tuff units within the Tertiary volcanic rocks and provide a very attractive means for distinguishing units of normal polarization from units of reversed polarization. If used in conjunction with results of previous magnetization studies of G. D. Bath (1968), the low-level survey may prove to be an effective tool for mapping specific tuff members in the volcanic terrane. The important question of the feasibility of discriminating high-quartz argillite from low-quartz argillite of the Eleana Formation using surface gravity data remains unresolved. If the more highly competent, denser, high-quartz phase should occur as stratigraphic units many tens of meters thick, closely spaced gravity data may reliably detect these units. If the high-quartz phase occurs only as relatively thin units, interbedded with low-quartz phase, borehole gravity surveying can be used much more effectively than equivalent surface gravity surveying.

CH3OCH3 in Orion-KL: a striking similarity with HCOOCH3

NASA Astrophysics Data System (ADS)

Brouillet, N.; Despois, D.; Baudry, A.; Peng, T.-C.; Favre, C.; Wootten, A.; Remijan, A. J.; Wilson, T. L.; Combes, F.; Wlodarczak, G.

2013-02-01

Context. Orion-KL is a remarkable, nearby star-forming region where a recent explosive event has generated shocks that could have released complex molecules from the grain mantles. Aims: A comparison of the distribution of the different complex molecules will help in understanding their formation and constraining the chemical models. Methods: We used several data sets from the Plateau de Bure Interferometer to map the dimethyl ether emission with different arcsec spatial resolutions and different energy levels (from Eup = 18 to 330 K) to compare with our previous methyl formate maps. Results: Our data show remarkable similarity between the dimethyl ether (CH3OCH3) and the methyl formate (HCOOCH3) distributions even on a small scale (1.8″ × 0.8″ or ~500 AU). This long suspected similarity, seen from both observational and theoretical arguments, is demonstrated with unprecedented confidence, with a correlation coefficient of maps ~0.8. Conclusions: A common precursor is the simplest explanation of our correlation. Comparisons with previous laboratory work and chemical models suggest the major role of grain surface chemistry and a recent release, probably with little processing, of mantle molecules by shocks. In this case the CH3O radical produced from methanol ice would be the common precursor (whereas ethanol, C2H5OH, is produced from the radical CH2OH). The alternative gas phase scheme, where protonated methanol CH3OH+2 is the common precursor to produce methyl formate and dimethyl ether through reactions with HCOOH and CH3OH, is also compatible with our data. Our observations cannot yet definitely allow a choice between the different chemical processes, but the tight correlation between the distributions of HCOOCH3 and CH3OCH3 strongly contrasts with the different behavior we observe for the distributions of ethanol and formic acid. This provides a very significant constraint on models. Based on observations carried out with the IRAM Plateau de Bure Interferometer. IRAM is supported by INSU/CNRS (France), MPG (Germany) and IGN (Spain).

Iron-mediated stabilization of soil carbon amplifies the benefits of ecological restoration in degraded lands.

PubMed

Silva, Lucas C R; Doane, Timothy A; Corrêa, Rodrigo S; Valverde, Vinicius; Pereira, Engil I P; Horwath, William R

2015-07-01

Recent observations across a 14-year restoration chronosequence have shown an unexpected accumulation of soil organic carbon in strip-mined areas of central Brazil. This was attributed to the rapid plant colonization that followed the incorporation of biosolids into exposed regoliths, but the specific mechanisms involved in the stabilization of carbon inputs from the vegetation remained unclear. Using isotopic and elemental analyses, we tested the hypothesis that plant-derived carbon accumulation was triggered by the formation of iron-coordinated complexes, stabilized into physically protected (occluded) soil fractions. Confirming this hypothesis, we identified a fast formation of microaggregates shortly after the application of iron-rich biosolids, which was characterized by a strong association between pyrophosphate-extractable iron and plant-derived organic matter. The formation of microaggregates preceded the development of macroaggregates, which drastically increased soil carbon content (-140 Mg C/ha) a few years after restoration. Consistent with previous theoretical work, iron-coordinated organic complexes served as nuclei for aggregate formation, reflecting the synergistic effect of biological, chemical, and physical mechanisms of carbon stabilization in developing soils. Nevertheless, iron was not the only factor affecting soil carbon content. The highest carbon accumulation was observed during the period of highest plant diversity (> 30 species; years 3-6), declining significantly with the exclusion of native species by invasive grasses (years 9-14). Furthermore, the increasing dominance of invasive grasses was associated with a steady decline in the concentration of soil nitrogen and phosphorus per unit of accumulated carbon. These results demonstrate the importance of interdependent ecological and biogeochemical processes, and the role of soil-plant interactions in determining the success of restoration efforts. In contrast with previous but unsuccessful attempts to restore mined areas through nutrient application alone, iron-mediated stabilization of vegetation inputs favored the regeneration of a barren stable state that had persisted for over five decades since disturbance. The effectiveness of coupled organic matter and iron "fertilization," combined with management of invasive species, has the possibility to enhance terrestrial carbon sequestration and accelerate the restoration of degraded lands, while addressing important challenges associated with urban waste disposal.

3D soil structure characterization of Biological Soil Crusts from Alpine Tarfala Valley

NASA Astrophysics Data System (ADS)

Mele, Giacomo; Gargiulo, Laura; Zucconi, Laura; D'Acqui, Luigi; Ventura, Stefano

2017-04-01

Cyanobacteria filaments, microfungal hyphae, lichen rhizinae and anchoring rhizoids of bryophytes all together contribute to induce formation of structure in the thin soil layer beneath the Biological Soil Crusts (BSCs). Quantitative assessment of the soil structure beneath the BSCs is primarily hindered by the fragile nature of the crusts. Therefore, the role of BSCs in affecting such soil physical property has been rarely addressed using direct measurements. In this work we applied non-destructive X-ray microtomography imaging on five different samples of BSCs collected in the Alpine Tarfala Valley (northern Sweden), which have already been characterized in terms of fungal biodiversity in a previous work. We obtained images of the 3D spatial organization of the soil underneath the BSCs and characterized its structure by applying procedures of image analysis allowing to determine pore size distribution, pore connectivity and aggregate size distribution. Results has then been correlated with the different fungal assemblages of the samples.

Subnetworks of percolation backbones to model karst systems around Tulum, Mexico

NASA Astrophysics Data System (ADS)

Hendrick, Martin; Renard, Philippe

2016-11-01

Karstic caves, which play a key role in groundwater transport, are often organized as complex connected networks resulting from the dissolution of carbonate rocks. In this work, we propose a new model to describe and study the structures of the two largest submersed karst networks in the world. Both of these networks are located in the area of Tulum (Quintana Roo, Mexico). In a previous work te{hendrick2016fractal} we showed that these networks behave as self-similar structures exhibiting well-defined scaling behaviours. In this paper, we suggest that these networks can be modeled using substructures of percolation clusters (θ-subnetworks) having similar structural behaviour (in terms of fractal dimension and conductivity exponent) to those observed in Tulum's karst networks. We show in addition that these θ-subnetworks correspond to structures that minimise a global function, where this global function includes energy dissipation by the viscous forces when water flows through the network, and the cost of network formation itself.

An immune-inspired swarm aggregation algorithm for self-healing swarm robotic systems.

PubMed

Timmis, J; Ismail, A R; Bjerknes, J D; Winfield, A F T

2016-08-01

Swarm robotics is concerned with the decentralised coordination of multiple robots having only limited communication and interaction abilities. Although fault tolerance and robustness to individual robot failures have often been used to justify the use of swarm robotic systems, recent studies have shown that swarm robotic systems are susceptible to certain types of failure. In this paper we propose an approach to self-healing swarm robotic systems and take inspiration from the process of granuloma formation, a process of containment and repair found in the immune system. We use a case study of a swarm performing team work where previous works have demonstrated that partially failed robots have the most detrimental effect on overall swarm behaviour. We have developed an immune inspired approach that permits the recovery from certain failure modes during operation of the swarm, overcoming issues that effect swarm behaviour associated with partially failed robots. Copyright © 2016 Elsevier Ireland Ltd. All rights reserved.

Stokes solitons in optical microcavities

NASA Astrophysics Data System (ADS)

Yang, Qi-Fan; Yi, Xu; Yang, Ki Youl; Vahala, Kerry

2017-01-01

Solitons are wave packets that resist dispersion through a self-induced potential well. They are studied in many fields, but are especially well known in optics on account of the relative ease of their formation and control in optical fibre waveguides. Besides their many interesting properties, solitons are important to optical continuum generation, in mode-locked lasers, and have been considered as a natural way to convey data over great distances. Recently, solitons have been realized in microcavities, thereby bringing the power of microfabrication methods to future applications. This work reports a soliton not previously observed in optical systems, the Stokes soliton. The Stokes soliton forms and regenerates by optimizing its Raman interaction in space and time within an optical potential well shared with another soliton. The Stokes and the initial soliton belong to distinct transverse mode families and benefit from a form of soliton trapping that is new to microcavities and soliton lasers in general. The discovery of a new optical soliton can impact work in other areas of photonics, including nonlinear optics and spectroscopy.

Factor structure of essential social skills to be salespersons in retail market: implications for psychiatric rehabilitation.

PubMed

Cheung, Leo C C; Tsang, Hector W H

2005-12-01

This study continued the effort to apply social skills training to increase vocational outcomes of people with severe mental illness. We planned to identify factor structure of essential social skills necessary for mental health consumers who have a vocational preference to work as salesperson in retail market. Exploratory factor analysis of the results of a 26-item questionnaire survey suggested a five-factor solution: social skills when interacting with customers, problem-solving skills, knowledge and attitudes, flexibility, and skills for conflict prevention, which accounted for 65.1% of the total variance. With the factor solution, we developed a job-specific social skills training program (JSST) to help consumers who want to be salespersons. The structure and session design followed the basic format of a typical social skills training program. The way this JSST is to be used with the work-related social skills training model previously developed by the corresponding author to produce better vocational outcomes of consumers is suggested.

Ensemble clustering in visual working memory biases location memories and reduces the Weber noise of relative positions.

PubMed

Lew, Timothy F; Vul, Edward

2015-01-01

People seem to compute the ensemble statistics of objects and use this information to support the recall of individual objects in visual working memory. However, there are many different ways that hierarchical structure might be encoded. We examined the format of structured memories by asking subjects to recall the locations of objects arranged in different spatial clustering structures. Consistent with previous investigations of structured visual memory, subjects recalled objects biased toward the center of their clusters. Subjects also recalled locations more accurately when they were arranged in fewer clusters containing more objects, suggesting that subjects used the clustering structure of objects to aid recall. Furthermore, subjects had more difficulty recalling larger relative distances, consistent with subjects encoding the positions of objects relative to clusters and recalling them with magnitude-proportional (Weber) noise. Our results suggest that clustering improved the fidelity of recall by biasing the recall of locations toward cluster centers to compensate for uncertainty and by reducing the magnitude of encoded relative distances.

The influence of topography on Titan’s atmospheric circulation and hydrologic cycle

NASA Astrophysics Data System (ADS)

Lora, Juan M.; Faulk, Sean; Mitchell, Jonathan

2017-10-01

Titan’s atmospheric circulation is a dominant driver of the global methane hydrologic cycle—producing weather and a seasonal climate cycle—while interactions between the surface and the troposphere strongly constrain regional climates, and contribute to the differentiation between Titan’s low latitude deserts and high latitude lake districts. Yet the influence of surface topography on the atmospheric circulation has only been studied in a few instances, and no published work has investigated the coupling between topographical forcing and Titan’s hydrologic cycle. In this work, we examine the impacts of global topography in the Titan Atmospheric Model (TAM), which includes a robust representation of the methane cycle. We focus in particular on the influence of large-scale topographical features on the atmospheric flow, atmospheric moisture transport, and cloud formation. High latitude transient weather systems have previously been identified as important contributors to global atmospheric methane transport, and here we examine whether topographically-forced stationary or quasi-permanent systems are also important, as they are in Earth’s hydrologic cycle.